Query 017309
Match_columns 373
No_of_seqs 140 out of 1525
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 12:21:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017309.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017309hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.7 4.3E-16 1.5E-20 149.5 25.9 242 42-290 6-253 (445)
2 3gia_A Uncharacterized protein 99.7 2E-14 7E-19 137.7 24.4 238 42-288 4-248 (444)
3 4djk_A Probable glutamate/gamm 99.4 8.5E-11 2.9E-15 114.5 27.5 240 41-290 8-263 (511)
4 2jln_A MHP1; hydantoin, transp 98.8 3E-06 1E-10 81.9 25.7 286 43-338 24-332 (501)
5 3dh4_A Sodium/glucose cotransp 98.3 0.0013 4.5E-08 63.9 28.8 153 38-203 14-169 (530)
6 2xq2_A Sodium/glucose cotransp 97.5 0.098 3.3E-06 51.4 27.2 151 40-203 45-198 (593)
7 2a65_A Leutaa, Na(+):neurotran 97.3 0.14 4.7E-06 49.2 28.3 157 180-336 180-371 (519)
8 4ain_A Glycine betaine transpo 62.8 1.1E+02 0.0037 29.2 13.7 23 43-65 93-115 (539)
9 3l1l_A Arginine/agmatine antip 56.6 1.2E+02 0.004 27.6 14.2 48 106-153 259-306 (445)
10 4djk_A Probable glutamate/gamm 20.5 5E+02 0.017 23.8 13.5 32 119-150 287-318 (511)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.75 E-value=4.3e-16 Score=149.47 Aligned_cols=242 Identities=10% Similarity=0.109 Sum_probs=177.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcch
Q 017309 42 IAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (373)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (373)
.+|+.|.++.++..+++++|+|++.+|...++.|..+++.+++.++........+.|...+.|+..+..+.+++.+||+.
T Consensus 6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~ 85 (445)
T 3l1l_A 6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFL 85 (445)
T ss_dssp -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHHH
T ss_pred CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCChH
Confidence 35689999999999999999999999999888887688888889999999999999998888888899999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHH
Q 017309 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVAT 201 (373)
Q Consensus 122 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 201 (373)
+++..+..++........+....++++..+++... ..+ ......+...+.+-....++.+...+++.+.....
T Consensus 86 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~ 158 (445)
T 3l1l_A 86 GYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-----DPW--VLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLA 158 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG-----SHH--HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc-----ccH--HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 99999999888877788888888888876654311 001 11122222222333344457777777776665554
Q ss_pred HHHHHhhheeccc--cCcccCCC---CccccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHHHHHHHHHHHHHH
Q 017309 202 ILIVLCVLFLGTI--EGIGFHPT---GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLI 275 (373)
Q Consensus 202 ~~~~~~i~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~i~~s~~~~~~~ 275 (373)
+...+.++..... ++....+. ....++.++..++....|+|.|.+......+|+|||+ +.+|++..+...+.++
T Consensus 159 i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~ 238 (445)
T 3l1l_A 159 LIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVC 238 (445)
T ss_dssp HHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHH
Confidence 4443333322211 11111111 1112355788899999999999999999999999996 6899999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 017309 276 YGGVAVMGFLMFGQG 290 (373)
Q Consensus 276 Y~~~g~~gy~~fg~~ 290 (373)
|+...+......+.+
T Consensus 239 y~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 239 YVLSTTAIMGMIPNA 253 (445)
T ss_dssp HHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHhcCCHH
Confidence 999998877777643
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.66 E-value=2e-14 Score=137.73 Aligned_cols=238 Identities=17% Similarity=0.138 Sum_probs=169.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhHhhhHHHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcc
Q 017309 42 IAHGCSFTQTIFNGINVMAGVGLLSTPYT-VKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKY 120 (373)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~Gil~lP~~-~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~ 120 (373)
.+|+.+.++.++..++.++|+|++..|.. ..++|...++.+++.+++.......+.|...+.|+.....+.+++.+||+
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~~ 83 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDN 83 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHCSS
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhCcc
Confidence 45689999999999999999999987654 45566557778888899999999999999888888888999999999996
Q ss_pred h-hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhH--HHHHHHHHHHhhhcccCCchhhHHHHHH
Q 017309 121 G-RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHL--FGILTALIVLPTIWLRDLRVISYLSATG 197 (373)
Q Consensus 121 ~-~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 197 (373)
. ...+.+..++........+....++++..+++... ..+. ...+...+++-....++.+...+++...
T Consensus 84 ~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~ 154 (444)
T 3gia_A 84 IITGALSILLWMSYVISIALFAKGFAGYFLPLINAPI---------NTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFI 154 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC---------CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---------chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2 22335666666667778888888898888765421 1111 1222222333334445677777777665
Q ss_pred HHHHHHHHHhhheecc--ccCcccCCCCccccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHHHHHHHHHHHHH
Q 017309 198 VVATILIVLCVLFLGT--IEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVL 274 (373)
Q Consensus 198 ~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~i~~s~~~~~~ 274 (373)
....+...+.++.... .+..++.+...+.++.++..++....|+|.|.+......+|+|||+ +.+|++..+...+.+
T Consensus 155 ~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~ 234 (444)
T 3gia_A 155 VLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMF 234 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHH
Confidence 5544443333222221 1211222222333455688888999999999999999999999997 599999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 017309 275 IYGGVAVMGFLMFG 288 (373)
Q Consensus 275 ~Y~~~g~~gy~~fg 288 (373)
+|+...+......+
T Consensus 235 ~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 235 VYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhCCC
Confidence 99998887665554
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.43 E-value=8.5e-11 Score=114.55 Aligned_cols=240 Identities=10% Similarity=0.063 Sum_probs=151.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHHHHHHHHHHHHHHH-HHHHHHHHhhh--hCCCCCChHHHHHHhc
Q 017309 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCC-YTASLMRYCFE--SKEGITTYPDIGEAAF 117 (373)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~i~~~~~~~~~~-~~~~~l~~~~~--~~~~~~~y~~l~~~~~ 117 (373)
+.+|+.+.++.++..++.++| +.++|. ....|...++..++.+++.. .....+.|... +.| .......+++.+
T Consensus 8 ~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~~~~~~ 83 (511)
T 4djk_A 8 GKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAWVSNTL 83 (511)
T ss_dssp ----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHHHHHHH
T ss_pred ccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhhHHhhc
Confidence 446789999999999999996 567775 45666555555555444443 36778888887 888 899999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhc--CCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHH
Q 017309 118 GKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLF--PGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSA 195 (373)
Q Consensus 118 G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~ 195 (373)
||+.+++..+..++.......++....++.+..++ +... ...+ ......+..++++-+...+..+...+++.
T Consensus 84 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~--~~~~~~~~~~~~~~~in~~g~~~~~~~~~ 157 (511)
T 4djk_A 84 GPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALN----EDPI--TKTIAALIILWALALTQFGGTKYTARIAK 157 (511)
T ss_dssp CHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGT----SCSS--HHHHHHHHHHHHHHHHHHTCSSSHHHHTH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc----cCcH--HHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 99999999998888887777777777777776553 1111 0001 11222222233333344457777777776
Q ss_pred HHHHHH-HHHHHhhheec---cccCc------ccCCCCccccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHHH
Q 017309 196 TGVVAT-ILIVLCVLFLG---TIEGI------GFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKA 264 (373)
Q Consensus 196 ~~~~~~-~~~~~~i~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~ 264 (373)
+..... +...+.++..+ ...+. +.+...+.+...+...++...+|+|.|.+......+|+|||+ +.+|+
T Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~a 237 (511)
T 4djk_A 158 VGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLA 237 (511)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHH
Confidence 653331 11111111111 11110 111111112222455678889999999999999999999997 69999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Q 017309 265 LITCFALCVLIYGGVAVMGFLMFGQG 290 (373)
Q Consensus 265 i~~s~~~~~~~Y~~~g~~gy~~fg~~ 290 (373)
+..++.++.++|+...+......+++
T Consensus 238 i~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 238 MLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 99999999999999988777666543
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.78 E-value=3e-06 Score=81.94 Aligned_cols=286 Identities=10% Similarity=0.070 Sum_probs=163.2
Q ss_pred CCCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCc
Q 017309 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAG--WA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (373)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G--~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (373)
+|+.++++.+..-++..++.+-+.+...... | +. +++..++..++......+...... +.+. ++.++.+..||+
T Consensus 24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~-GLs~~~a~lai~lG~li~~~~~~l~~~~G~-~~Gl-~~~v~~R~~FG~ 100 (501)
T 2jln_A 24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQMTS-SFQVWQVIVAIAAGCTIAVILLFFTQSAAI-RWGI-NFTVAARMPFGI 100 (501)
T ss_dssp GCCBCHHHHHHHHHHHHCSTHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHHHHHTHHHH-HHCC-CHHHHTTTTSCT
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHHHHHHhHHHh-hcCC-ChhhhhHhhcch
Confidence 3456888888888888888777766665554 5 34 665555555555544444444433 3332 489999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHH
Q 017309 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (373)
Q Consensus 120 ~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 199 (373)
++..+..+...+...|-........++.+...+.... + .+......++..++.++.... .++.+++++.+...
T Consensus 101 ~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~----g--~~~~~v~~~i~~~l~~~~~~~-G~~~i~~~~~~~~p 173 (501)
T 2jln_A 101 RGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT----G--FTNLPLWIVIFGAIQVVTTFY-GITFIRWMNVFASP 173 (501)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----C--CCCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C--cchHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence 9999999999888888888888888888877653210 0 111334455566666666644 78888888877765
Q ss_pred HHHHHHHhhheecc-ccCc--c-cCCCCccccccchhhhhhh-HhhhcccceehhhHhhhccCchh------------hH
Q 017309 200 ATILIVLCVLFLGT-IEGI--G-FHPTGQVVKWSGMPFAIGI-YGFCYSGHSVFPNIYQSMADKTK------------FT 262 (373)
Q Consensus 200 ~~~~~~~~i~~~~~-~~~~--~-~~~~~~~~~~~~~~~~~~~-~~faf~~~~~~~~i~~~m~~p~~------------~~ 262 (373)
..++..+.+.+... ..+. + .....+......+..++.. ..+.-....+.+...+.+|++++ ..
T Consensus 174 ~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~~~~~~ 253 (501)
T 2jln_A 174 VLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKADARYA 253 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCccccccchhhccchHH
Confidence 55444433332221 1111 0 1111111222344444433 23323344678888999998876 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhc-CCCchHHHHHHH-HHHHHHHHHhhhh-hhchhHHHHHHHcCC
Q 017309 263 KALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLN-MPPHAFASKVAV-WTTVINPFTKYAL-LMNPLARSIEELLPA 338 (373)
Q Consensus 263 ~~i~~s~~~~~~~Y~~~g~~gy~~fg~~~~~~il~n-~~~~~~~~~i~~-~~~~i~~~~s~pl-~~~~~~~~~~~~~~~ 338 (373)
.....+..+...+..++|.......+......++.. +++......++- +..+++.+.+--. ++++....+.+.+++
T Consensus 254 ~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~~~ 332 (501)
T 2jln_A 254 TAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPR 332 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCcc
Confidence 233334445555555556544334443333344433 322222133344 4455555544443 788888888888754
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.26 E-value=0.0013 Score=63.88 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=89.0
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHhHh-hhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHH
Q 017309 38 GELPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEA 115 (373)
Q Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~ 115 (373)
|-.-..|+.+++...+.+..+.+++. ++++|....+.|+. ....+. .++........+....+ +.+..|..|+-++
T Consensus 14 dy~laGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~-~~~~~T~~e~l~~ 91 (530)
T 3dh4_A 14 XXXXAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFI-EKGIYTIPEFVEK 91 (530)
T ss_dssp HHHCCCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHH-HTTCCSHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHH-HcCCccHHHHHHH
Confidence 33445678999999999999999886 57899998888875 322111 11111122223333333 5678999999999
Q ss_pred hcCcchhhHHHHHHHHH-HHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHH
Q 017309 116 AFGKYGRLLISVLLYTE-LYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLS 194 (373)
Q Consensus 116 ~~G~~~~~~~~i~~~~~-~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 194 (373)
-||++.+.+..+...+. .+....+.+...+..++.+.+ ++ .+..+++..++..-.+..-.++...+..
T Consensus 92 Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G----------i~-~~~~i~i~~~i~~~Yt~~GGl~aV~~TD 160 (530)
T 3dh4_A 92 RFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG----------IP-LMYSILGLALFALVYSIYGGLSAVVWTD 160 (530)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------CC-HHHHHHHHHHHHHHTTC------CCSHH
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CC-HHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 99999887776654432 222233333334455555542 11 3344555556656667777888888777
Q ss_pred HHHHHHHHH
Q 017309 195 ATGVVATIL 203 (373)
Q Consensus 195 ~~~~~~~~~ 203 (373)
.+-.+.++.
T Consensus 161 ~iQ~~im~~ 169 (530)
T 3dh4_A 161 VIQVFFLVL 169 (530)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766555444
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.47 E-value=0.098 Score=51.39 Aligned_cols=151 Identities=15% Similarity=0.114 Sum_probs=83.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhHh-hhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhc
Q 017309 40 LPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAF 117 (373)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~ 117 (373)
.-..|+.+++...+.+..+.+++. .++.|....+.|+. ....+. .++........+..-.+ +.+..|..|.-++-|
T Consensus 45 ~laGR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~-r~~~~T~~e~l~~Rf 122 (593)
T 2xq2_A 45 FLAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFI-EKGIYTIPEFVEKRF 122 (593)
T ss_dssp ------CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHH-HTTCCSHHHHHHHHT
T ss_pred hcCCCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHH-hCCCCCcHHHHHHHc
Confidence 334678899999999988888776 56899988888875 322211 11111111222333323 567899999999999
Q ss_pred CcchhhHHHHHHHH-HHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHH
Q 017309 118 GKYGRLLISVLLYT-ELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSAT 196 (373)
Q Consensus 118 G~~~~~~~~i~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 196 (373)
|++.+.+..++..+ +.+......+...+..++.+.+- + .+...++..++....+..-.++...+...+
T Consensus 123 g~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi----------~-~~~~i~i~~~i~~~Yt~~GGl~av~~TD~i 191 (593)
T 2xq2_A 123 NKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGI----------P-LMYSILGLALFALVYSIYGGLSAVVWTDVI 191 (593)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCC----------C-HHHHHHHHHHHHHHHHHTTC---CCHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----------c-HHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 99888777655443 22222333333345555555431 1 233444555555666677678877777666
Q ss_pred HHHHHHH
Q 017309 197 GVVATIL 203 (373)
Q Consensus 197 ~~~~~~~ 203 (373)
-.+.++.
T Consensus 192 Q~iiml~ 198 (593)
T 2xq2_A 192 QVFFLVL 198 (593)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=97.29 E-value=0.14 Score=49.21 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=78.9
Q ss_pred hhhcccCC-chhhHHHHHHHHHHHHHHHhhheeccc-cCcc----------c-CCCCccccccchhhhhhhHhhhcc-cc
Q 017309 180 PTIWLRDL-RVISYLSATGVVATILIVLCVLFLGTI-EGIG----------F-HPTGQVVKWSGMPFAIGIYGFCYS-GH 245 (373)
Q Consensus 180 pl~~~~~l-~~l~~~s~~~~~~~~~~~~~i~~~~~~-~~~~----------~-~~~~~~~~~~~~~~~~~~~~faf~-~~ 245 (373)
-++..|.+ +...+++.+-.....++.+.+++.... +++. . ++.....+.+-+..+.+.++|+.. |.
T Consensus 180 ~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~~A~gQ~FFSLslG~ 259 (519)
T 2a65_A 180 VSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGF 259 (519)
T ss_dssp HHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHHHHHHHHHHHhHHHH
Confidence 35667787 667777776655555444444443332 2210 0 011111222346789999999998 55
Q ss_pred eehhhHhhhccCchhhHHHHHHHHHHHHHHH-----HHHHHHHHHHhcCC-ch---------------hhhhhcCCCchH
Q 017309 246 SVFPNIYQSMADKTKFTKALITCFALCVLIY-----GGVAVMGFLMFGQG-TL---------------SQITLNMPPHAF 304 (373)
Q Consensus 246 ~~~~~i~~~m~~p~~~~~~i~~s~~~~~~~Y-----~~~g~~gy~~fg~~-~~---------------~~il~n~~~~~~ 304 (373)
..+......+|+.++..|........-+..- .+++..+|.++|.+ .+ +.+..++|-...
T Consensus 260 G~~ity~SY~~~~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~~~~~~v~~~G~pgL~Fi~~P~af~~mp~g~~ 339 (519)
T 2a65_A 260 GAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTF 339 (519)
T ss_dssp SHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTHHH
T ss_pred hHHhhhhcccCCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHhcCCCCceeHHHHHHHHHhCCCccc
Confidence 5666666667766666654443333333322 22333455445533 21 123344554444
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchhHHHHHHHc
Q 017309 305 ASKVAVWTTVINPFTKYALLMNPLARSIEELL 336 (373)
Q Consensus 305 ~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~ 336 (373)
+..+--+++.+..+.|---.+-+....+.+.+
T Consensus 340 ~~~lFF~~l~~agltS~i~~~E~~vt~l~D~~ 371 (519)
T 2a65_A 340 LGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL 371 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhh
Confidence 44333333444444444444555555555544
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=62.84 E-value=1.1e+02 Score=29.24 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=19.2
Q ss_pred CCCCCHHHHHHHHHHHHHhHhhh
Q 017309 43 AHGCSFTQTIFNGINVMAGVGLL 65 (373)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil 65 (373)
+++-|.++=+.+++.+-+|+|++
T Consensus 93 kPefS~~sW~aMlF~AGmGiGl~ 115 (539)
T 4ain_A 93 APEFRTVSWISMMFAAGMGIGLM 115 (539)
T ss_dssp CCSSCHHHHHHHHHTTSCCTHHH
T ss_pred CCCCcchHHHHHHHHHhhcchhe
Confidence 44677777789999999999987
No 9
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=56.55 E-value=1.2e+02 Score=27.64 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=40.1
Q ss_pred CCChHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC
Q 017309 106 ITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFP 153 (373)
Q Consensus 106 ~~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~ 153 (373)
...+.++.+..+|+++..++.+...+..++...++....++.+..+-+
T Consensus 259 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~ 306 (445)
T 3l1l_A 259 ASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAAD 306 (445)
T ss_dssp TCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999988888888887766543
No 10
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=20.53 E-value=5e+02 Score=23.82 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=20.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 017309 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTS 150 (373)
Q Consensus 119 ~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~ 150 (373)
++...++.+...+..++...++....++.+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 318 (511)
T 4djk_A 287 EWTVRVISALLLLGVLAEIASWIVGPSRGMYV 318 (511)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777666666666666553
Done!