Query 017311
Match_columns 373
No_of_seqs 205 out of 330
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 07:27:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03110 SBP: SBP domain; Int 100.0 3E-40 6.5E-45 265.4 -2.7 78 185-262 1-78 (79)
2 PF14901 Jiv90: Cleavage induc 51.0 7.7 0.00017 33.2 1.1 19 223-241 26-44 (94)
3 PRK00241 nudC NADH pyrophospha 34.3 12 0.00025 36.0 -0.4 37 198-235 92-128 (256)
4 TIGR03831 YgiT_finger YgiT-typ 27.4 25 0.00055 24.2 0.5 20 213-232 21-40 (46)
5 PF14776 UNC-79: Cation-channe 25.8 45 0.00098 36.1 2.2 28 205-232 262-298 (525)
6 COG2502 AsnA Asparagine synthe 25.2 26 0.00056 35.5 0.2 16 14-29 116-131 (330)
7 PF12108 SF3a60_bindingd: Spli 24.7 18 0.00039 24.9 -0.7 11 195-205 16-26 (28)
8 PRK06424 transcription factor; 23.5 42 0.00091 30.2 1.2 21 215-235 14-34 (144)
9 KOG1112 Ribonucleotide reducta 21.7 32 0.00069 37.8 0.1 14 7-20 571-584 (796)
10 TIGR00270 conserved hypothetic 21.4 50 0.0011 29.9 1.3 23 213-235 13-35 (154)
11 COG2816 NPY1 NTP pyrophosphohy 20.7 29 0.00063 34.7 -0.4 35 199-234 105-139 (279)
No 1
>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []. Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.
Probab=100.00 E-value=3e-40 Score=265.38 Aligned_cols=78 Identities=67% Similarity=1.219 Sum_probs=63.3
Q ss_pred ceeeCCCccccccChhhhcccccchhccCCCeEEECCchhhHHHHhhccCCCCccccccchHHHHHhHHHHhhccCCc
Q 017311 185 LCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQP 262 (373)
Q Consensus 185 ~CQVeGC~~dLs~~K~YhrRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH~L~EFDg~KRSCR~rLa~HN~RRRk~~~ 262 (373)
+||||||++||+.+|.||+||||||.|++||+|+++|+++||||||+|||+|+|||++|||||++|++||+||||+++
T Consensus 1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~ 78 (79)
T PF03110_consen 1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ 78 (79)
T ss_dssp C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence 599999999999999999999999999999999999999999999999999999999999999999999999999876
No 2
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=50.96 E-value=7.7 Score=33.18 Aligned_cols=19 Identities=37% Similarity=0.597 Sum_probs=15.4
Q ss_pred hhhHHHHhhccCCCCcccc
Q 017311 223 ERRFCQQCSRFHGLSEFDE 241 (373)
Q Consensus 223 ~qRFCQQCsRFH~L~EFDg 241 (373)
.-|+||+|..+|+..|=|.
T Consensus 26 ~AR~C~~C~~~H~Ak~gDi 44 (94)
T PF14901_consen 26 AARYCQDCKIRHPAKEGDI 44 (94)
T ss_pred hhHhHHHhhhhcccccCCe
Confidence 4699999999998766543
No 3
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=34.34 E-value=12 Score=36.04 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=28.3
Q ss_pred ChhhhcccccchhccCCCeEEECCchhhHHHHhhccCC
Q 017311 198 AKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHG 235 (373)
Q Consensus 198 ~K~YhrRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH~ 235 (373)
+-.+|++||-|..+-....+. .+...|.|..|+..|-
T Consensus 92 l~~w~~~~~fC~~CG~~~~~~-~~~~~~~C~~c~~~~y 128 (256)
T PRK00241 92 LAEFYRSHRFCGYCGHPMHPS-KTEWAMLCPHCRERYY 128 (256)
T ss_pred HHHHhhcCccccccCCCCeec-CCceeEECCCCCCEEC
Confidence 347999999999888765554 4555788999997664
No 4
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=27.36 E-value=25 Score=24.16 Aligned_cols=20 Identities=15% Similarity=0.509 Sum_probs=17.5
Q ss_pred CCCeEEECCchhhHHHHhhc
Q 017311 213 KSPKVIVGGLERRFCQQCSR 232 (373)
Q Consensus 213 KAp~V~v~G~~qRFCQQCsR 232 (373)
+.-.+++.+++..+|++|+.
T Consensus 21 ~~~~~~i~~vp~~~C~~CGE 40 (46)
T TIGR03831 21 GGELIVIENVPALVCPQCGE 40 (46)
T ss_pred CCEEEEEeCCCccccccCCC
Confidence 66778899999999999985
No 5
>PF14776 UNC-79: Cation-channel complex subunit UNC-79
Probab=25.84 E-value=45 Score=36.11 Aligned_cols=28 Identities=36% Similarity=0.693 Sum_probs=20.3
Q ss_pred cccchhccCCCeEEE---------CCchhhHHHHhhc
Q 017311 205 HRVCENHSKSPKVIV---------GGLERRFCQQCSR 232 (373)
Q Consensus 205 hrVCe~HsKAp~V~v---------~G~~qRFCQQCsR 232 (373)
+|-|.-+.|..+|+- ++++.|+||||..
T Consensus 262 nK~C~S~~k~AvvtCFS~eCt~~~gn~PiRlC~~Ch~ 298 (525)
T PF14776_consen 262 NKNCRSSDKSAVVTCFSTECTSYNGNRPIRLCQQCHS 298 (525)
T ss_pred CCCCcCCCCCeEEEEechhhccccCCCcchhHHHHhh
Confidence 455666666666663 7889999999953
No 6
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=25.19 E-value=26 Score=35.50 Aligned_cols=16 Identities=38% Similarity=0.781 Sum_probs=12.7
Q ss_pred ccccccccccCccccc
Q 017311 14 QWDWENLIMFNATAAE 29 (373)
Q Consensus 14 ~WdWEnl~~~~~~~~e 29 (373)
|||||.+++-+.+..+
T Consensus 116 QWDWEkvi~~g~rNl~ 131 (330)
T COG2502 116 QWDWEKVIPDGDRNLA 131 (330)
T ss_pred ccchhhhcCCccccHH
Confidence 8999999987765443
No 7
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=24.72 E-value=18 Score=24.89 Aligned_cols=11 Identities=45% Similarity=0.860 Sum_probs=7.4
Q ss_pred cccChhhhccc
Q 017311 195 LSSAKDYHRKH 205 (373)
Q Consensus 195 Ls~~K~YhrRh 205 (373)
|..+|+||+||
T Consensus 16 lk~Ike~Hrr~ 26 (28)
T PF12108_consen 16 LKEIKEYHRRY 26 (28)
T ss_dssp HHHHHHHHHS-
T ss_pred HHHHHHHHHhC
Confidence 55677888876
No 8
>PRK06424 transcription factor; Provisional
Probab=23.51 E-value=42 Score=30.21 Aligned_cols=21 Identities=29% Similarity=0.736 Sum_probs=18.6
Q ss_pred CeEEECCchhhHHHHhhccCC
Q 017311 215 PKVIVGGLERRFCQQCSRFHG 235 (373)
Q Consensus 215 p~V~v~G~~qRFCQQCsRFH~ 235 (373)
-.|+|+|.+.+-|..|.+|=.
T Consensus 14 ~~v~ieg~~l~vC~~Ca~~G~ 34 (144)
T PRK06424 14 TKVMIDGAILNVCDDCAKFGT 34 (144)
T ss_pred eEEEEcCeeeehhHHHHHcCC
Confidence 468999999999999998854
No 9
>KOG1112 consensus Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]
Probab=21.70 E-value=32 Score=37.78 Aligned_cols=14 Identities=50% Similarity=1.192 Sum_probs=13.0
Q ss_pred cCCCCCCccccccc
Q 017311 7 WNGKTPLQWDWENL 20 (373)
Q Consensus 7 wN~k~~~~WdWEnl 20 (373)
||.|+.-.|||+.|
T Consensus 571 w~~~pt~~wDW~~L 584 (796)
T KOG1112|consen 571 WNVKPTDLWDWATL 584 (796)
T ss_pred cCCCCCcccCHHHH
Confidence 99999999999866
No 10
>TIGR00270 conserved hypothetical protein TIGR00270.
Probab=21.39 E-value=50 Score=29.89 Aligned_cols=23 Identities=30% Similarity=0.703 Sum_probs=19.5
Q ss_pred CCCeEEECCchhhHHHHhhccCC
Q 017311 213 KSPKVIVGGLERRFCQQCSRFHG 235 (373)
Q Consensus 213 KAp~V~v~G~~qRFCQQCsRFH~ 235 (373)
+.-.|.|+|.+..-|..|.+|=.
T Consensus 13 ~~~~v~iega~l~vC~~C~k~G~ 35 (154)
T TIGR00270 13 KGFKIVIEGSEMTVCGECRKFGK 35 (154)
T ss_pred CCeEEEEcCeEEehhhhHHhcCC
Confidence 34578999999999999998844
No 11
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=20.69 E-value=29 Score=34.73 Aligned_cols=35 Identities=26% Similarity=0.484 Sum_probs=28.1
Q ss_pred hhhhcccccchhccCCCeEEECCchhhHHHHhhccC
Q 017311 199 KDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFH 234 (373)
Q Consensus 199 K~YhrRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH 234 (373)
-.+|++||.|..+ -+++...+|...|-|++|+.-|
T Consensus 105 ~~w~~~~RFCg~C-G~~~~~~~~g~~~~C~~cg~~~ 139 (279)
T COG2816 105 LEWYRSHRFCGRC-GTKTYPREGGWARVCPKCGHEH 139 (279)
T ss_pred HHHHhhCcCCCCC-CCcCccccCceeeeCCCCCCcc
Confidence 4689999999854 5677777777899999998655
Done!