Query 017311
Match_columns 373
No_of_seqs 205 out of 330
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 12:23:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 6E-44 2.1E-48 293.7 -1.9 88 179-266 4-91 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 1.5E-42 5.1E-47 282.6 -3.7 83 182-264 2-84 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 7.9E-33 2.7E-37 211.7 0.6 59 182-240 2-60 (60)
4 1vk6_A NADH pyrophosphatase; 1 23.5 13 0.00043 34.4 -0.9 37 198-235 100-136 (269)
5 2d8r_A THAP domain-containing 21.3 37 0.0013 26.8 1.6 13 182-194 8-20 (99)
6 2lau_A THAP domain-containing 19.9 45 0.0015 25.0 1.7 11 183-193 4-14 (81)
7 2dt7_A Splicing factor 3A subu 16.5 23 0.00078 24.6 -0.6 12 195-206 19-30 (38)
8 4a6q_A Histone deacetylase com 14.9 24 0.00084 30.9 -1.0 29 202-241 20-48 (143)
9 1loi_A Cyclic 3',5'-AMP specif 10.2 51 0.0017 21.4 -0.3 21 224-244 5-25 (26)
10 1gh9_A 8.3 kDa protein (gene M 10.0 66 0.0023 24.9 0.2 27 207-236 6-32 (71)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=6e-44 Score=293.72 Aligned_cols=88 Identities=58% Similarity=1.025 Sum_probs=80.5
Q ss_pred CCCCCcceeeCCCccccccChhhhcccccchhccCCCeEEECCchhhHHHHhhccCCCCccccccchHHHHHhHHHHhhc
Q 017311 179 QTTQAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRR 258 (373)
Q Consensus 179 ~~~~~~~CQVeGC~~dLs~~K~YhrRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH~L~EFDg~KRSCR~rLa~HN~RRR 258 (373)
.+.+.++||||||++||+.+|+||+||||||+|+|||+|+|+|+++||||||+|||+|+|||+.|||||+||++||+|||
T Consensus 4 ~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RRR 83 (94)
T 1ul4_A 4 GSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRR 83 (94)
T ss_dssp ----CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCC
T ss_pred CCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHhc
Confidence 35578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccc
Q 017311 259 KSQPEAVR 266 (373)
Q Consensus 259 k~~~~~~~ 266 (373)
|+++|+.+
T Consensus 84 k~~~~~~~ 91 (94)
T 1ul4_A 84 KSSGESGP 91 (94)
T ss_dssp SCCCC---
T ss_pred cCCCCcCC
Confidence 99999864
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=1.5e-42 Score=282.56 Aligned_cols=83 Identities=46% Similarity=0.919 Sum_probs=79.3
Q ss_pred CCcceeeCCCccccccChhhhcccccchhccCCCeEEECCchhhHHHHhhccCCCCccccccchHHHHHhHHHHhhccCC
Q 017311 182 QAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQ 261 (373)
Q Consensus 182 ~~~~CQVeGC~~dLs~~K~YhrRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH~L~EFDg~KRSCR~rLa~HN~RRRk~~ 261 (373)
..++||||||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||++|||||+||++||+||||++
T Consensus 2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~ 81 (88)
T 1ul5_A 2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP 81 (88)
T ss_dssp -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred ccc
Q 017311 262 PEA 264 (373)
Q Consensus 262 ~~~ 264 (373)
++.
T Consensus 82 ~~~ 84 (88)
T 1ul5_A 82 VDK 84 (88)
T ss_dssp CSS
T ss_pred ccC
Confidence 765
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.97 E-value=7.9e-33 Score=211.71 Aligned_cols=59 Identities=64% Similarity=1.203 Sum_probs=57.3
Q ss_pred CCcceeeCCCccccccChhhhcccccchhccCCCeEEECCchhhHHHHhhccCCCCccc
Q 017311 182 QAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFD 240 (373)
Q Consensus 182 ~~~~CQVeGC~~dLs~~K~YhrRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH~L~EFD 240 (373)
+.++||||||++||+.+|+|||||||||.|+|||+|+++|+++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 56899999999999999999999999999999999999999999999999999999998
No 4
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=23.46 E-value=13 Score=34.38 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=28.3
Q ss_pred ChhhhcccccchhccCCCeEEECCchhhHHHHhhccCC
Q 017311 198 AKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHG 235 (373)
Q Consensus 198 ~K~YhrRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH~ 235 (373)
+..++++++-|..+- ++.+..++...+.|..|+..|-
T Consensus 100 l~~w~~~~~fC~~CG-~~~~~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 100 LAEFYRSHKYCGYCG-HEMYPSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp HHHHHHTTSBCTTTC-CBEEECSSSSCEEESSSSCEEC
T ss_pred HHhhhhcCCccccCC-CcCccCCCceeeeCCCCCCEec
Confidence 346888999998865 4556677778899999987553
No 5
>2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16
Probab=21.32 E-value=37 Score=26.75 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=9.3
Q ss_pred CCcceeeCCCccc
Q 017311 182 QAALCQVEGCGLD 194 (373)
Q Consensus 182 ~~~~CQVeGC~~d 194 (373)
-+..|-|.||...
T Consensus 8 M~~~C~v~gC~n~ 20 (99)
T 2d8r_A 8 MPTNCAAAGCATT 20 (99)
T ss_dssp CCCCCCSSSCCCS
T ss_pred CCCeeEeCCCCCC
Confidence 3446889999864
No 6
>2lau_A THAP domain-containing protein 11; zinc finger, protein-DNA complex, DNA binding domain, transc factor, CCCH, transcription-DNA complex; NMR {Homo sapiens}
Probab=19.89 E-value=45 Score=24.99 Aligned_cols=11 Identities=36% Similarity=0.606 Sum_probs=7.7
Q ss_pred CcceeeCCCcc
Q 017311 183 AALCQVEGCGL 193 (373)
Q Consensus 183 ~~~CQVeGC~~ 193 (373)
...|-|.||..
T Consensus 4 G~~C~v~gC~n 14 (81)
T 2lau_A 4 GFTCCVPGCYN 14 (81)
T ss_dssp CCSCCCSSSSS
T ss_pred CCEEEeCCCcC
Confidence 34688888864
No 7
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=16.47 E-value=23 Score=24.60 Aligned_cols=12 Identities=50% Similarity=0.930 Sum_probs=7.6
Q ss_pred cccChhhhcccc
Q 017311 195 LSSAKDYHRKHR 206 (373)
Q Consensus 195 Ls~~K~YhrRhr 206 (373)
|..+|+||+||-
T Consensus 19 lk~Ike~Hrr~P 30 (38)
T 2dt7_A 19 LKQIKEFHRKHP 30 (38)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHHHhCC
Confidence 455677777763
No 8
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=14.86 E-value=24 Score=30.91 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=23.3
Q ss_pred hcccccchhccCCCeEEECCchhhHHHHhhccCCCCcccc
Q 017311 202 HRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDE 241 (373)
Q Consensus 202 hrRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH~L~EFDg 241 (373)
--|.++|+++.+ -||++=++||.|+||..
T Consensus 20 idRektcPfLLR-----------vF~~~ng~hh~~~eF~~ 48 (143)
T 4a6q_A 20 IDREKTCPLLLR-----------VFTTNNGRHHRMDEFSR 48 (143)
T ss_dssp CCGGGSCCEEEE-----------EEEESSSSCCCGGGGCT
T ss_pred ccccCCCCeEEE-----------EEecCCCCCCCHHHccC
Confidence 358999999764 48876679999999974
No 9
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=10.20 E-value=51 Score=21.36 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=15.1
Q ss_pred hhHHHHhhccCCCCccccccc
Q 017311 224 RRFCQQCSRFHGLSEFDEKKR 244 (373)
Q Consensus 224 qRFCQQCsRFH~L~EFDg~KR 244 (373)
--||.-|++=-.+.=+|.-||
T Consensus 5 dffcetcskpwlvgwwdqfkr 25 (26)
T 1loi_A 5 DFFCETCSKPWLVGWWDQFKR 25 (26)
T ss_dssp HHHHHTSSCTTGGGGHHHHTC
T ss_pred HHHHHhcCCchhhhhHHHhcc
Confidence 358999998777766665554
No 10
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=10.04 E-value=66 Score=24.94 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=20.2
Q ss_pred cchhccCCCeEEECCchhhHHHHhhccCCC
Q 017311 207 VCENHSKSPKVIVGGLERRFCQQCSRFHGL 236 (373)
Q Consensus 207 VCe~HsKAp~V~v~G~~qRFCQQCsRFH~L 236 (373)
.|+ ..+..++-+|....-|+ |++-|.+
T Consensus 6 ~C~--C~~~~~~~~~~kT~~C~-CG~~~~~ 32 (71)
T 1gh9_A 6 RCD--CGRALYSREGAKTRKCV-CGRTVNV 32 (71)
T ss_dssp EET--TSCCEEEETTCSEEEET-TTEEEEC
T ss_pred ECC--CCCEEEEcCCCcEEECC-CCCeeee
Confidence 477 55667788899999998 9975543
Done!