BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017312
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A0U|A Chain A, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
pdb|2A0U|B Chain B, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
Length = 383
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 163/371 (43%), Positives = 223/371 (60%), Gaps = 16/371 (4%)
Query: 12 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXV 71
+L+SI Y GSL+LLDQRKLPLET++ ++ D WSAI+E VRG V
Sbjct: 17 TLESIKYTPGSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEXRVRGAPAIAVSAALGIAV 76
Query: 72 EVFN--LNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEAN 129
N + + +FL +++ +SRPTAVNL + LK + K T + A
Sbjct: 77 ATQRKAANGELKSGREVQTFLLTSCDFVXTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAE 136
Query: 130 SVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLK---NSKFSVLTHCNTGSLATAGY 186
V QA++E AE + +DVA N+ I +GA+ + K K S+LT CNTG+LAT+ Y
Sbjct: 137 -VAQAFVELAEAVYTNDVAFNEGIXRHGAAHILAAAKAEGRDKVSILTICNTGALATSRY 195
Query: 187 GTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDG 246
GTALGV+R L +G LER Y ETRP+NQG+RLT +E V + IP L +
Sbjct: 196 GTALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAASSLXLNR 255
Query: 247 RVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIE 306
++ AV+VGADR+ NGDTANKIGTY+LA+ AKFH + YVAAP T++D+ +SG + IE
Sbjct: 256 KIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIE 315
Query: 307 ERSAKEL---LCSRGGLGEQVAASG--ISVWNPAFDVTPANLIT-GIITEKGVVTKAGAD 360
ER E+ L ++ ++V A G +S+WNP FD+TP+ LIT GIITEKGV A +
Sbjct: 316 EREPTEITTNLVTK----QRVVADGPHLSIWNPVFDITPSELITGGIITEKGVQAPAASA 371
Query: 361 DAFDIKDFIQK 371
+DI I +
Sbjct: 372 PYYDIASIIAQ 382
>pdb|1T9K|A Chain A, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|B Chain B, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|C Chain C, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|D Chain D, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
Length = 347
Score = 237 bits (604), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 150/335 (44%), Positives = 195/335 (58%), Gaps = 21/335 (6%)
Query: 22 SLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAF-S 80
SL+LLDQRKLP Y+E + + AI+E +VRG V L + +
Sbjct: 16 SLKLLDQRKLPFIEEYVECKTHEEVAHAIKEXIVRGAPAIGVAAAFGY---VLGLRDYKT 72
Query: 81 GTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAE 140
G+ D + E L +RPTAVNL A + +++ + A + ++F+ A
Sbjct: 73 GSLTD---WXKQVKETLARTRPTAVNLFWALNRXEKVFFENA----DRENLFEILENEAL 125
Query: 141 IMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEG 200
+D+ NKAIG GA QL ++LTHCN G+LAT YGTALGVIRA G
Sbjct: 126 KXAYEDIEVNKAIGKNGA-----QLIKDGSTILTHCNAGALATVDYGTALGVIRAAVESG 180
Query: 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAA 260
R + ETRP+ QG+RLTA+EL D I L K G + AV+VGADR+A
Sbjct: 181 KRIRVFADETRPYLQGARLTAWELXKDGIEVYVITDNXAGWLXKRGLIDAVVVGADRIAL 240
Query: 261 NGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELL-CSRGG 319
NGDTANKIGTYSLA+ AK +NI FYVAAP+++ID T+ SG+EI IEER +E+ C
Sbjct: 241 NGDTANKIGTYSLAVLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEERRPEEVTHCG--- 297
Query: 320 LGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 354
G ++A G+ V NPAFDVT LIT IITEKGV+
Sbjct: 298 -GNRIAPEGVKVLNPAFDVTENTLITAIITEKGVI 331
>pdb|2YRF|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YRF|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YVK|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|C Chain C, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|D Chain D, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
Length = 374
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 136/349 (38%), Positives = 191/349 (54%), Gaps = 28/349 (8%)
Query: 14 QSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXX-----XX 68
+S+ ++ ++ +L+Q+KLP ET YLE+ D + AI + VRG
Sbjct: 30 RSVEWKETAITILNQQKLPDETEYLELTTKEDVFDAIVTLKVRGAPAIGITAAFGLALAA 89
Query: 69 XXVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEA 128
+E N+ F D +YL SSRPTA+NLS A +L + A +
Sbjct: 90 KDIETDNVTEFRRRLEDIK-------QYLNSSRPTAINLSWALERLSHSVENAISVNEAK 142
Query: 129 NSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQN--QLKNSKFSVLTHCNTGSLATAGY 186
++ EA +I ++D+ T + IG QN QL ++T CN GS+AT+ Y
Sbjct: 143 TNLVH---EAIQIQVEDE-ETCRLIG-------QNALQLFKKGDRIMTICNAGSIATSRY 191
Query: 187 GTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDG 246
GTAL + + Y ETRP QGSRLTA+EL+ I MK+
Sbjct: 192 GTALAPFYLAKQKDLGLHIYACETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTMKEK 251
Query: 247 RVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIE 306
++SAVIVGADR+A NGDTANKIGTY LA+ A +I F+VAAPL++ D + G +I IE
Sbjct: 252 QISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAPLSTFDTKVKCGADIPIE 311
Query: 307 ERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVT 355
ER +E+ R G + A S + V+NPAFD+TP +LI+GIITEKG++T
Sbjct: 312 ERDPEEV---RQISGVRTAPSNVPVFNPAFDITPHDLISGIITEKGIMT 357
>pdb|1T5O|A Chain A, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|B Chain B, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|C Chain C, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|D Chain D, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
Length = 351
Score = 197 bits (501), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 132/347 (38%), Positives = 184/347 (53%), Gaps = 25/347 (7%)
Query: 12 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXV 71
SL+SI + G L+L+DQ KLP + +E R+ + AI+++ VRG
Sbjct: 2 SLRSIFWDDG-LKLIDQTKLPEKLEVIECRNVEELADAIKKLAVRGAPALEAAGAYG--- 57
Query: 72 EVFNLNAFSGTAADAASF---LGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEA 128
L A AD L ++L S+RPTAVNL E AA
Sbjct: 58 --IALAAREREFADVDELKEHLKKAADFLASTRPTAVNLFVGI----ERALNAALKGESV 111
Query: 129 NSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGT 188
V + + AE + ++DV N+ +G YGA L++ VLT+CN G LAT +GT
Sbjct: 112 EEVKELALREAEKLAEEDVERNRKMGEYGAELLEDG-----DVVLTYCNAGRLATVDWGT 166
Query: 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRV 248
ALGV+R+ +G R ETRP NQGSRLT +EL+ D I +M+ G V
Sbjct: 167 ALGVVRSAVEQGKEIRVIACETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGMV 226
Query: 249 SAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEER 308
VIVGADR+ + NKIGTY++++ AK HNI FYVAAP + D + +++VIEER
Sbjct: 227 DKVIVGADRIVRDA-VFNKIGTYTVSVVAKHHNIPFYVAAPKATFDWE-RTAKDVVIEER 284
Query: 309 SAKELL-CSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 354
+EL+ C + Q+A + V+NPAFD TP +T +ITE GV+
Sbjct: 285 PREELIFCGK----RQIAPLNVKVYNPAFDPTPLENVTALITEYGVI 327
>pdb|1W2W|B Chain B, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
pdb|1W2W|F Chain F, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
pdb|1W2W|J Chain J, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
pdb|1W2W|N Chain N, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
Length = 191
Score = 137 bits (345), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 99/174 (56%), Gaps = 21/174 (12%)
Query: 204 RAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVS--AVIVGADRVAAN 261
+ ETRP+NQGSRLTA+ELV+D+IP ++ + A VGADR+ N
Sbjct: 6 HVFPLETRPYNQGSRLTAYELVYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRIVRN 65
Query: 262 GDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGL- 320
GDTANKIGT LA+ K I F+V AP T+ID +G +I++EER+ +E G +
Sbjct: 66 GDTANKIGTLQLAVICKQFGIKFFVVAPKTTIDNVTETGDDIIVEERNPEEFKVVTGTVI 125
Query: 321 ------------GEQ------VAASGISVWNPAFDVTPANLITGIITEKGVVTK 356
GE +A I+VWNPAFD+TP LI GIITE+GV TK
Sbjct: 126 NPENGSLILNESGEPITGKVGIAPLEINVWNPAFDITPHELIDGIITEEGVFTK 179
>pdb|1W2W|A Chain A, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
pdb|1W2W|E Chain E, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
pdb|1W2W|I Chain I, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
pdb|1W2W|M Chain M, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
Length = 211
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 23/209 (11%)
Query: 12 SLQSICYRRG-----SLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXX 66
SL++I + R S+++LDQ LP T Y+ I DG+S I+ VRG
Sbjct: 2 SLEAIVFDRSEPENVSVKVLDQLLLPYTTKYVPIHTIDDGYSVIKSXQVRGAPAIAIVGS 61
Query: 67 XXXXVEV--FNLNAFSGTAA--------DAASFLGNKLEYLVSSRPTAVNLSDAAAKLKE 116
EV N S A + L +L++L+SSRPTAVNLS++ ++K
Sbjct: 62 LSVLTEVQLIKHNPTSDVATLYSLVNWESTKTVLNKRLDFLLSSRPTAVNLSNSLVEIKN 121
Query: 117 IISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNS----KFSV 172
I+ ++ + S++ E ++ +D+A N G GA +L + L+ +F+V
Sbjct: 122 ILKSSSDLKAFDGSLYNYVCE----LIDEDLANNXKXGDNGAKYLIDVLQKDGFKDEFAV 177
Query: 173 LTHCNTGSLATAGYGTALGVIRALHSEGV 201
LT CNTGSLAT+GYGTALGVIR+L + +
Sbjct: 178 LTICNTGSLATSGYGTALGVIRSLWKDSL 206
>pdb|3A11|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
Length = 338
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 129/290 (44%), Gaps = 32/290 (11%)
Query: 75 NLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQ- 133
N++ F AA L +RPTAV+L +A L+ ++ + S + Q
Sbjct: 60 NVDEFWKEMKQAAKIL-------FETRPTAVSLPNA---LRYVMHRGKIAYSSGADLEQL 109
Query: 134 --AYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALG 191
I AA+ + + + IG +GA +++ ++THC++ + A+
Sbjct: 110 RFVIINAAKEFIHNSEKALERIGEFGAKRIEDG-----DVIMTHCHSKA--------AIS 156
Query: 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAV 251
V++ +G + +ETRP QG ++TA EL IP MK V
Sbjct: 157 VMKTAWEQGKDIKVIVTETRPKWQG-KITAKELASYGIPVIYVVDSAARHYMK--MTDKV 213
Query: 252 IVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAK 311
++GAD + NG NKIGT +AL AK H + +AA GQ + IE R
Sbjct: 214 VMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPT 273
Query: 312 ELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGADD 361
E++ + I VWNPAFDVTP + IITE+G++ A D
Sbjct: 274 EVIPEDEL---KTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAID 320
>pdb|3VM6|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
Length = 338
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 128/290 (44%), Gaps = 32/290 (11%)
Query: 75 NLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQ- 133
N++ F AA L +RPTAV+L +A L+ ++ + S + Q
Sbjct: 60 NVDEFWKEMKQAAKIL-------FETRPTAVSLPNA---LRYVMHRGKIAYSSGADLEQL 109
Query: 134 --AYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALG 191
I AA+ + + + IG +GA +++ ++TH ++ + A+
Sbjct: 110 RFVIINAAKEFIHNSEKALERIGEFGAKRIEDG-----DVIMTHSHSKA--------AIS 156
Query: 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAV 251
V++ +G + +ETRP QG ++TA EL IP MK V
Sbjct: 157 VMKTAWEQGKDIKVIVTETRPKWQG-KITAKELASYGIPVIYVVDSAARHYMK--MTDKV 213
Query: 252 IVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAK 311
++GAD + NG NKIGT +AL AK H + +AA GQ + IE R
Sbjct: 214 VMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPT 273
Query: 312 ELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGADD 361
E++ + I VWNPAFDVTP + IITE+G++ A D
Sbjct: 274 EVIPEDEL---KTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAID 320
>pdb|3A9C|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 322
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 129/291 (44%), Gaps = 33/291 (11%)
Query: 75 NLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQ- 133
N++ F AA L +RPTAV+L +A L+ ++ + S + Q
Sbjct: 43 NVDEFWKEMKQAAKIL-------FETRPTAVSLPNA---LRYVMHRGKIAYSSGADLEQL 92
Query: 134 --AYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTH-CNTGSLATAGYGTAL 190
I AA+ + + + IG +GA +++ ++TH C++ + A+
Sbjct: 93 RFVIINAAKEFIHNSEKALERIGEFGAKRIEDG-----DVIMTHXCHSKA--------AI 139
Query: 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSA 250
V++ +G + +ETRP QG ++TA EL IP MK
Sbjct: 140 SVMKTAWEQGKDIKVIVTETRPKWQG-KITAKELASYGIPVIYVVDSAARHYMK--MTDK 196
Query: 251 VIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSA 310
V++GAD + NG NKIGT +AL AK H + +AA GQ + IE R
Sbjct: 197 VVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDP 256
Query: 311 KELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGADD 361
E++ + I VWNPAFDVTP + IITE+G++ A D
Sbjct: 257 TEVIPEDEL---KTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAID 304
>pdb|3A9C|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 323
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 129/291 (44%), Gaps = 33/291 (11%)
Query: 75 NLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQ- 133
N++ F AA L +RPTAV+L +A L+ ++ + S + Q
Sbjct: 44 NVDEFWKEMKQAAKIL-------FETRPTAVSLPNA---LRYVMHRGKIAYSSGADLEQL 93
Query: 134 --AYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTH-CNTGSLATAGYGTAL 190
I AA+ + + + IG +GA +++ ++TH C++ + A+
Sbjct: 94 RFVIINAAKEFIHNSEKALERIGEFGAKRIEDG-----DVIMTHXCHSKA--------AI 140
Query: 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSA 250
V++ +G + +ETRP QG ++TA EL IP MK
Sbjct: 141 SVMKTAWEQGKDIKVIVTETRPKWQG-KITAKELASYGIPVIYVVDSAARHYMK--MTDK 197
Query: 251 VIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSA 310
V++GAD + NG NKIGT +AL AK H + +AA GQ + IE R
Sbjct: 198 VVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDP 257
Query: 311 KELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGADD 361
E++ + I VWNPAFDVTP + IITE+G++ A D
Sbjct: 258 TEVIPEDEL---KTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAID 305
>pdb|3A9C|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 321
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 129/291 (44%), Gaps = 33/291 (11%)
Query: 75 NLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQ- 133
N++ F AA L +RPTAV+L +A L+ ++ + S + Q
Sbjct: 42 NVDEFWKEMKQAAKIL-------FETRPTAVSLPNA---LRYVMHRGKIAYSSGADLEQL 91
Query: 134 --AYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTH-CNTGSLATAGYGTAL 190
I AA+ + + + IG +GA +++ ++TH C++ + A+
Sbjct: 92 RFVIINAAKEFIHNSEKALERIGEFGAKRIEDG-----DVIMTHXCHSKA--------AI 138
Query: 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSA 250
V++ +G + +ETRP QG ++TA EL IP MK
Sbjct: 139 SVMKTAWEQGKDIKVIVTETRPKWQG-KITAKELASYGIPVIYVVDSAARHYMK--MTDK 195
Query: 251 VIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSA 310
V++GAD + NG NKIGT +AL AK H + +AA GQ + IE R
Sbjct: 196 VVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDP 255
Query: 311 KELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGADD 361
E++ + I VWNPAFDVTP + IITE+G++ A D
Sbjct: 256 TEVIPEDEL---KTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAID 303
>pdb|3A9C|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 326
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 133/298 (44%), Gaps = 50/298 (16%)
Query: 75 NLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQ- 133
N++ F AA L +RPTAV+L +A L+ ++ + S + Q
Sbjct: 50 NVDEFWKEMKQAAKIL-------FETRPTAVSLPNA---LRYVMHRGKIAYSSGADLEQL 99
Query: 134 --AYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTH-CNTGSLATAGYGTAL 190
I AA+ + + + IG +GA +++ ++TH C++ + A+
Sbjct: 100 RFVIINAAKEFIHNSEKALERIGEFGAKRIEDG-----DVIMTHXCHSKA--------AI 146
Query: 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSA 250
V++ +G + +ETRP QG ++TA EL IP MK
Sbjct: 147 SVMKTAWEQGKDIKVIVTETRPKWQG-KITAKELASYGIPVIYVVDSAARHYMK--MTDK 203
Query: 251 VIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA------PLTS-IDLTLSSGQEI 303
V++GAD + NG NKIGT +AL AK H + +AA P T +++ + E+
Sbjct: 204 VVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLVEIEMRDPTEV 263
Query: 304 VIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGADD 361
+ E+ EL + I VWNPAFDVTP + IITE+G++ A D
Sbjct: 264 IPED----EL---------KTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAID 308
>pdb|1VB5|A Chain A, Crystal Structure Analysis Of The Pyrococcus Horikoshii
Ot3 Translation Initiation Factor Eif-2b
pdb|1VB5|B Chain B, Crystal Structure Analysis Of The Pyrococcus Horikoshii
Ot3 Translation Initiation Factor Eif-2b
Length = 276
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 55/106 (51%), Gaps = 15/106 (14%)
Query: 249 SAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEER 308
S IVGAD + +G NK GTY LAL + I FYVAA TL SG +++E
Sbjct: 179 SIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAETYKFHPTLKSGDVMLME-- 236
Query: 309 SAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 354
++L+ RG + + N FDVTP + GIITE G+V
Sbjct: 237 --RDLI--RG---------NVRIRNVLFDVTPWKYVRGIITELGIV 269
>pdb|3ECS|A Chain A, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|B Chain B, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|C Chain C, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|D Chain D, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|E Chain E, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|F Chain F, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|G Chain G, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|H Chain H, Crystal Structure Of Human Eif2b Alpha
Length = 315
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 105/263 (39%), Gaps = 19/263 (7%)
Query: 106 NLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQN-Q 164
NL+ A L + S A S +F +I A + D K G FL+
Sbjct: 48 NLTSAIETLCGVDSSVAV--SSGGELFLRFISLASLEYSDYSKCKKIXIERGELFLRRIS 105
Query: 165 LKNSKFSVLTHC---NTGSLATAGYGTALGVIRALHSEGVLER---AYCSETRPFNQGSR 218
L +K + L H + ++ T Y V+R L + ++ Y +E++P G +
Sbjct: 106 LSRNKIADLCHTFIKDGATILTHAYSRV--VLRVLEAAVAAKKRFSVYVTESQPDLSGKK 163
Query: 219 LTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278
A L H +P + + + VIVGA+ V NG NKIGT A+CAK
Sbjct: 164 -XAKALCHLNVPVTVVLDAAVGYIXE--KADLVIVGAEGVVENGGIINKIGTNQXAVCAK 220
Query: 279 FHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDV 338
N FYV A Q+ V ++ K G+ + +P D
Sbjct: 221 AQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKADTLKVAQTGQDLKEE-----HPWVDY 275
Query: 339 TPANLITGIITEKGVVTKAGADD 361
T +LIT + T+ GV+T + D
Sbjct: 276 TAPSLITLLFTDLGVLTPSAVSD 298
>pdb|1VFE|A Chain A, Human Lactoferrin, N-terminal Lobe Mutant With Arg 121
Replaced By Ser (r121s)
Length = 333
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 152 AIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRAL 196
A+ G SF N+L+ L C+TG +TAG+ +G +R
Sbjct: 96 AVVKKGGSFQLNELQG-----LKSCHTGLRSTAGWNVPIGTLRPF 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,086,180
Number of Sequences: 62578
Number of extensions: 322863
Number of successful extensions: 760
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 17
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)