Query 017312
Match_columns 373
No_of_seqs 251 out of 1445
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:27:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0182 Predicted translation 100.0 1E-107 2E-112 774.6 33.9 344 12-371 2-346 (346)
2 PRK08334 translation initiatio 100.0 6.5E-98 1E-102 730.0 36.1 342 13-371 14-355 (356)
3 PRK05720 mtnA methylthioribose 100.0 8.2E-98 2E-102 731.5 35.6 341 13-371 3-343 (344)
4 PRK05772 translation initiatio 100.0 1.8E-97 4E-102 730.2 36.8 344 13-370 16-362 (363)
5 TIGR00512 salvage_mtnA S-methy 100.0 2.6E-97 6E-102 723.4 35.8 327 14-356 1-331 (331)
6 PRK06036 translation initiatio 100.0 5.7E-96 1E-100 716.0 34.5 329 13-357 1-331 (339)
7 KOG1468 Predicted translation 100.0 6.6E-96 1E-100 677.5 25.9 343 11-358 1-344 (354)
8 PRK06371 translation initiatio 100.0 1.6E-93 3.4E-98 694.3 32.0 316 8-357 7-322 (329)
9 TIGR00524 eIF-2B_rel eIF-2B al 100.0 8E-84 1.7E-88 625.1 31.6 303 40-356 1-303 (303)
10 TIGR00511 ribulose_e2b2 ribose 100.0 1.1E-77 2.4E-82 582.6 29.8 299 42-369 1-299 (301)
11 PRK08535 translation initiatio 100.0 1.4E-76 3.1E-81 577.2 29.4 301 40-369 4-304 (310)
12 PRK08335 translation initiatio 100.0 6.5E-76 1.4E-80 560.0 28.5 269 41-357 4-272 (275)
13 COG1184 GCD2 Translation initi 100.0 3.9E-67 8.5E-72 500.6 28.1 295 41-367 4-298 (301)
14 PF01008 IF-2B: Initiation fac 100.0 3.5E-66 7.5E-71 498.2 26.1 281 54-356 1-282 (282)
15 KOG1467 Translation initiation 100.0 4.6E-56 1E-60 438.2 21.0 298 46-361 233-545 (556)
16 KOG1466 Translation initiation 100.0 2.9E-55 6.4E-60 404.1 22.0 273 61-358 29-303 (313)
17 KOG1465 Translation initiation 100.0 3.6E-52 7.8E-57 390.7 29.5 294 42-357 10-336 (353)
18 PRK06372 translation initiatio 100.0 9E-51 2E-55 382.5 22.5 247 48-358 4-250 (253)
19 TIGR00021 rpiA ribose 5-phosph 97.4 0.0022 4.8E-08 60.0 12.3 124 151-306 3-132 (218)
20 cd01398 RPI_A RPI_A: Ribose 5- 97.4 0.0017 3.8E-08 60.4 10.9 125 151-306 3-132 (213)
21 PRK00702 ribose-5-phosphate is 97.2 0.0062 1.3E-07 57.1 12.3 126 149-306 6-136 (220)
22 PRK10434 srlR DNA-bindng trans 96.8 0.07 1.5E-06 51.0 15.8 125 148-295 76-213 (256)
23 PRK13509 transcriptional repre 96.7 0.035 7.5E-07 52.9 13.1 123 148-295 78-212 (251)
24 PF00455 DeoRC: DeoR C termina 96.7 0.059 1.3E-06 47.8 13.6 124 149-295 5-141 (161)
25 PRK09802 DNA-binding transcrip 96.5 0.11 2.3E-06 50.1 15.0 125 148-295 91-228 (269)
26 PRK10906 DNA-binding transcrip 96.0 0.22 4.8E-06 47.5 14.5 125 148-295 76-213 (252)
27 PRK10411 DNA-binding transcrip 95.5 0.61 1.3E-05 44.2 15.2 124 148-295 78-214 (240)
28 COG1349 GlpR Transcriptional r 94.6 0.87 1.9E-05 43.5 13.4 125 149-296 77-214 (253)
29 PRK10681 DNA-binding transcrip 93.7 1.4 2.9E-05 42.0 12.8 124 149-295 78-214 (252)
30 PF02142 MGS: MGS-like domain 93.7 0.18 3.8E-06 40.7 5.8 80 190-285 3-94 (95)
31 cd00532 MGS-like MGS-like doma 93.6 0.69 1.5E-05 38.4 9.4 84 190-289 15-107 (112)
32 PLN02384 ribose-5-phosphate is 91.4 3.8 8.2E-05 39.5 12.4 126 153-307 39-170 (264)
33 cd01424 MGS_CPS_II Methylglyox 90.7 3.6 7.9E-05 33.7 10.3 81 190-287 16-101 (110)
34 smart00851 MGS MGS-like domain 90.7 2.4 5.3E-05 33.5 8.9 80 191-285 4-89 (90)
35 cd01423 MGS_CPS_I_III Methylgl 89.8 1.3 2.8E-05 36.8 6.9 78 189-285 15-105 (116)
36 PRK13978 ribose-5-phosphate is 89.3 6.8 0.00015 37.0 12.0 125 152-306 10-139 (228)
37 COG0120 RpiA Ribose 5-phosphat 88.3 9.8 0.00021 35.9 12.1 126 151-306 8-136 (227)
38 PRK05234 mgsA methylglyoxal sy 87.9 4.7 0.0001 35.2 9.3 89 189-289 19-114 (142)
39 COG2057 AtoA Acyl CoA:acetate/ 87.7 2.5 5.3E-05 39.7 7.7 100 224-358 69-185 (225)
40 PF01073 3Beta_HSD: 3-beta hyd 86.6 1.8 3.9E-05 41.8 6.5 106 182-293 2-119 (280)
41 TIGR02428 pcaJ_scoB_fam 3-oxoa 76.8 25 0.00054 32.6 10.0 98 150-265 3-112 (207)
42 PRK09932 glycerate kinase II; 76.0 4.1 8.8E-05 41.4 4.8 50 241-294 280-329 (381)
43 COG1929 Glycerate kinase [Carb 74.6 22 0.00047 35.9 9.3 51 240-294 279-329 (378)
44 TIGR00045 glycerate kinase. Th 73.0 5.4 0.00012 40.4 4.8 50 241-294 279-328 (375)
45 PRK10342 glycerate kinase I; P 70.6 6.6 0.00014 39.9 4.8 50 241-294 280-329 (381)
46 PF10087 DUF2325: Uncharacteri 67.9 22 0.00047 28.5 6.6 40 239-287 42-81 (97)
47 PLN02260 probable rhamnose bio 67.5 24 0.00052 38.1 8.7 91 201-293 379-485 (668)
48 PLN02331 phosphoribosylglycina 66.5 28 0.00061 32.3 7.8 71 185-259 8-91 (207)
49 cd01422 MGS Methylglyoxal synt 65.1 27 0.0006 29.1 6.8 74 202-287 27-107 (115)
50 PLN02778 3,5-epimerase/4-reduc 63.6 29 0.00062 33.5 7.6 25 265-289 86-110 (298)
51 COG4635 HemG Flavodoxin [Energ 63.3 7.2 0.00016 34.9 3.0 64 220-287 21-85 (175)
52 PRK00208 thiG thiazole synthas 61.4 49 0.0011 31.7 8.4 107 184-293 70-187 (250)
53 cd00293 USP_Like Usp: Universa 60.0 83 0.0018 24.7 10.3 58 226-287 67-130 (130)
54 PF05690 ThiG: Thiazole biosyn 58.8 31 0.00066 32.9 6.5 115 168-292 61-186 (247)
55 PRK03359 putative electron tra 58.3 1.2E+02 0.0025 29.2 10.6 88 170-289 57-147 (256)
56 PRK05973 replicative DNA helic 58.2 1.7E+02 0.0037 27.7 13.2 116 168-292 63-194 (237)
57 COG2873 MET17 O-acetylhomoseri 57.9 45 0.00097 34.0 7.8 65 218-287 116-183 (426)
58 PF02595 Gly_kinase: Glycerate 57.5 5.6 0.00012 40.3 1.5 52 239-294 278-329 (377)
59 PRK00414 gmhA phosphoheptose i 57.4 1.4E+02 0.0031 27.0 10.6 38 246-290 110-147 (192)
60 PRK08574 cystathionine gamma-s 56.8 1.4E+02 0.003 30.1 11.5 87 191-286 83-172 (385)
61 PRK13936 phosphoheptose isomer 56.4 1.6E+02 0.0034 26.8 12.6 37 246-289 110-146 (197)
62 cd01988 Na_H_Antiporter_C The 56.2 1.1E+02 0.0023 24.7 10.5 61 224-287 65-131 (132)
63 COG1091 RfbD dTDP-4-dehydrorha 55.6 43 0.00094 32.6 7.2 59 238-296 41-107 (281)
64 PF02254 TrkA_N: TrkA-N domain 54.1 33 0.00071 27.7 5.4 87 185-289 5-97 (116)
65 PRK10886 DnaA initiator-associ 54.0 1.8E+02 0.0038 26.7 13.5 37 246-289 108-144 (196)
66 TIGR00639 PurN phosphoribosylg 52.8 71 0.0015 29.1 7.8 70 186-259 10-92 (190)
67 PF01135 PCMT: Protein-L-isoas 52.7 14 0.0003 34.3 3.2 76 168-255 72-149 (209)
68 COG1737 RpiR Transcriptional r 52.5 2.2E+02 0.0048 27.3 16.5 63 221-290 149-213 (281)
69 TIGR01426 MGT glycosyltransfer 51.3 48 0.001 33.0 7.1 32 254-291 92-123 (392)
70 TIGR01470 cysG_Nterm siroheme 51.2 74 0.0016 29.2 7.8 94 168-289 8-102 (205)
71 KOG3075 Ribose 5-phosphate iso 50.1 2E+02 0.0043 27.7 10.4 95 188-296 53-151 (261)
72 cd04728 ThiG Thiazole synthase 50.0 96 0.0021 29.7 8.4 106 184-292 70-186 (248)
73 PF05368 NmrA: NmrA-like famil 48.1 82 0.0018 28.7 7.7 99 172-289 1-102 (233)
74 TIGR00474 selA seryl-tRNA(sec) 47.6 3.4E+02 0.0073 28.2 12.8 89 195-288 155-252 (454)
75 PF11814 DUF3335: Peptidase_C3 47.4 92 0.002 29.0 7.6 69 190-258 57-141 (207)
76 PRK05749 3-deoxy-D-manno-octul 47.2 1.2E+02 0.0026 30.5 9.3 102 168-288 49-154 (425)
77 PF03853 YjeF_N: YjeF-related 46.8 2.1E+02 0.0044 25.3 10.9 126 149-286 8-136 (169)
78 TIGR01369 CPSaseII_lrg carbamo 46.2 1.5E+02 0.0032 34.3 10.8 81 190-286 953-1038(1050)
79 PF06026 Rib_5-P_isom_A: Ribos 46.2 39 0.00084 30.5 4.9 78 220-307 10-89 (173)
80 CHL00194 ycf39 Ycf39; Provisio 45.5 1.1E+02 0.0025 29.4 8.5 90 191-290 15-110 (317)
81 PF03709 OKR_DC_1_N: Orn/Lys/A 45.1 31 0.00068 28.6 3.9 66 221-291 10-77 (115)
82 PF02844 GARS_N: Phosphoribosy 45.1 36 0.00079 28.0 4.2 88 171-285 2-90 (100)
83 PRK05294 carB carbamoyl phosph 44.5 89 0.0019 36.1 8.7 64 220-289 972-1040(1066)
84 TIGR01140 L_thr_O3P_dcar L-thr 44.4 1E+02 0.0022 29.9 8.1 87 189-286 76-163 (330)
85 COG0426 FpaA Uncharacterized f 44.3 2.3E+02 0.005 29.0 10.5 143 134-291 183-339 (388)
86 cd00287 ribokinase_pfkB_like r 44.2 69 0.0015 27.9 6.3 69 200-288 23-91 (196)
87 PRK02947 hypothetical protein; 44.0 2.8E+02 0.0061 26.1 12.5 33 220-254 125-168 (246)
88 PRK07812 O-acetylhomoserine am 43.4 2.5E+02 0.0054 29.0 11.0 90 190-288 98-192 (436)
89 PLN02735 carbamoyl-phosphate s 43.2 1.1E+02 0.0024 35.5 9.2 63 220-287 1007-1074(1102)
90 PF02441 Flavoprotein: Flavopr 42.9 22 0.00049 29.9 2.7 93 189-287 16-116 (129)
91 cd00614 CGS_like CGS_like: Cys 42.5 2E+02 0.0043 28.5 9.9 88 189-286 68-160 (369)
92 TIGR00273 iron-sulfur cluster- 42.4 2.7E+02 0.0059 28.8 11.0 52 246-298 180-232 (432)
93 PF00391 PEP-utilizers: PEP-ut 42.3 20 0.00043 27.8 2.2 33 246-289 29-61 (80)
94 PRK12320 hypothetical protein; 42.1 91 0.002 34.4 7.9 53 236-290 51-103 (699)
95 PRK13011 formyltetrahydrofolat 41.8 63 0.0014 31.5 6.0 63 186-254 99-172 (286)
96 PRK12815 carB carbamoyl phosph 41.7 1.2E+02 0.0026 35.1 9.1 61 220-286 972-1037(1068)
97 COG2242 CobL Precorrin-6B meth 41.1 66 0.0014 29.5 5.6 75 168-254 34-109 (187)
98 TIGR02429 pcaI_scoA_fam 3-oxoa 40.7 2.1E+02 0.0047 26.8 9.2 98 157-287 12-122 (222)
99 KOG0259 Tyrosine aminotransfer 40.6 2.1E+02 0.0045 29.4 9.4 119 149-286 108-237 (447)
100 PF00582 Usp: Universal stress 40.5 62 0.0013 25.7 5.0 44 241-287 96-139 (140)
101 PRK05647 purN phosphoribosylgl 39.3 1.6E+02 0.0036 26.9 8.1 71 186-260 11-94 (200)
102 PRK09191 two-component respons 39.2 2.3E+02 0.0049 25.9 9.2 95 187-289 119-218 (261)
103 PRK07582 cystathionine gamma-l 39.2 1.2E+02 0.0027 30.1 7.9 72 203-286 90-167 (366)
104 cd01989 STK_N The N-terminal d 38.7 2.3E+02 0.0049 23.5 9.7 61 225-288 75-144 (146)
105 COG2518 Pcm Protein-L-isoaspar 38.4 61 0.0013 30.3 5.0 87 168-269 72-170 (209)
106 COG0031 CysK Cysteine synthase 38.2 2.3E+02 0.005 27.9 9.3 118 67-210 77-204 (300)
107 PF00072 Response_reg: Respons 37.6 92 0.002 24.1 5.5 79 205-292 1-82 (112)
108 PRK13789 phosphoribosylamine-- 37.5 73 0.0016 32.7 6.0 78 170-262 5-83 (426)
109 PF04392 ABC_sub_bind: ABC tra 37.5 25 0.00053 33.8 2.4 37 246-289 183-219 (294)
110 PF03162 Y_phosphatase2: Tyros 37.4 34 0.00073 30.5 3.1 25 169-196 91-115 (164)
111 COG2086 FixA Electron transfer 37.3 2.2E+02 0.0047 27.5 8.8 88 170-289 58-146 (260)
112 TIGR00655 PurU formyltetrahydr 37.0 95 0.0021 30.1 6.4 64 185-254 93-167 (280)
113 PLN02828 formyltetrahydrofolat 36.8 1.4E+02 0.0029 29.0 7.4 67 185-254 79-154 (268)
114 cd05017 SIS_PGI_PMI_1 The memb 36.5 78 0.0017 26.0 5.1 54 228-290 26-79 (119)
115 PF13580 SIS_2: SIS domain; PD 36.4 68 0.0015 27.3 4.8 30 168-202 103-132 (138)
116 PRK01438 murD UDP-N-acetylmura 36.1 2E+02 0.0044 29.6 9.1 58 190-255 29-86 (480)
117 TIGR01437 selA_rel uncharacter 36.0 4.4E+02 0.0096 26.1 12.5 16 271-286 169-184 (363)
118 COG0451 WcaG Nucleoside-diphos 35.5 1.7E+02 0.0036 27.5 7.8 52 237-290 55-116 (314)
119 PRK04425 Maf-like protein; Rev 35.2 3E+02 0.0065 25.3 9.1 80 198-288 22-107 (196)
120 PF02310 B12-binding: B12 bind 35.1 1.8E+02 0.004 23.3 7.1 74 216-295 16-95 (121)
121 KOG1430 C-3 sterol dehydrogena 34.9 2.4E+02 0.0051 28.6 9.0 107 185-293 12-129 (361)
122 PRK14364 Maf-like protein; Pro 34.6 3.1E+02 0.0068 24.8 9.0 77 199-286 15-97 (181)
123 PRK12767 carbamoyl phosphate s 34.5 76 0.0016 30.6 5.4 61 191-256 14-78 (326)
124 PRK15118 universal stress glob 34.3 37 0.00081 28.4 2.8 41 241-287 97-137 (144)
125 cd06454 KBL_like KBL_like; thi 34.3 4E+02 0.0088 25.4 10.5 60 224-287 102-168 (349)
126 PRK07810 O-succinylhomoserine 34.0 4.7E+02 0.01 26.5 11.2 87 190-286 99-190 (403)
127 PRK13010 purU formyltetrahydro 33.9 1.2E+02 0.0026 29.6 6.6 64 185-254 102-176 (289)
128 cd05005 SIS_PHI Hexulose-6-pho 33.8 1.3E+02 0.0029 26.5 6.4 60 221-290 52-111 (179)
129 COG1104 NifS Cysteine sulfinat 33.7 5.4E+02 0.012 26.4 12.5 106 168-286 61-176 (386)
130 PRK05784 phosphoribosylamine-- 33.1 77 0.0017 33.3 5.4 67 192-259 15-81 (486)
131 PRK13566 anthranilate synthase 33.0 1.6E+02 0.0036 32.5 8.1 82 200-289 524-606 (720)
132 PRK05939 hypothetical protein; 32.7 5.2E+02 0.011 26.1 11.3 84 190-286 76-166 (397)
133 PRK08248 O-acetylhomoserine am 32.6 3.5E+02 0.0076 27.8 10.1 87 191-287 94-185 (431)
134 cd03466 Nitrogenase_NifN_2 Nit 32.6 5.6E+02 0.012 26.2 16.2 95 169-288 300-397 (429)
135 PRK08133 O-succinylhomoserine 32.3 5E+02 0.011 26.1 11.0 85 192-286 92-181 (390)
136 KOG3349 Predicted glycosyltran 32.0 80 0.0017 28.2 4.4 49 168-229 80-128 (170)
137 cd05013 SIS_RpiR RpiR-like pro 31.6 2.8E+02 0.006 22.4 8.5 62 223-291 34-97 (139)
138 PRK08462 biotin carboxylase; V 31.5 1.3E+02 0.0029 30.7 6.8 78 170-262 5-91 (445)
139 PF06849 DUF1246: Protein of u 31.2 55 0.0012 28.0 3.2 85 182-286 2-94 (124)
140 PRK15116 sulfur acceptor prote 30.9 4.9E+02 0.011 25.1 12.0 42 246-296 120-162 (268)
141 COG2022 ThiG Uncharacterized e 30.7 4.2E+02 0.0091 25.4 9.2 107 184-293 77-194 (262)
142 PRK12342 hypothetical protein; 30.6 4.2E+02 0.0091 25.4 9.5 92 170-293 54-148 (254)
143 cd05005 SIS_PHI Hexulose-6-pho 30.5 3.7E+02 0.0081 23.5 10.1 32 220-253 94-125 (179)
144 PRK15029 arginine decarboxylas 30.4 1.9E+02 0.0041 32.2 8.1 86 204-292 2-96 (755)
145 PRK09920 acetyl-CoA:acetoacety 30.4 2.1E+02 0.0045 26.8 7.3 98 156-287 10-119 (219)
146 cd03784 GT1_Gtf_like This fami 30.3 1.6E+02 0.0035 29.0 7.1 33 253-291 103-135 (401)
147 PRK06702 O-acetylhomoserine am 30.1 6.3E+02 0.014 26.0 11.7 83 192-287 92-183 (432)
148 COG0623 FabI Enoyl-[acyl-carri 29.9 5.1E+02 0.011 24.9 10.6 153 66-240 21-192 (259)
149 cd00578 L-fuc_L-ara-isomerases 29.9 6.1E+02 0.013 26.0 11.4 103 170-287 65-194 (452)
150 PRK09987 dTDP-4-dehydrorhamnos 29.8 1.3E+02 0.0027 28.9 6.0 55 239-293 46-108 (299)
151 TIGR01181 dTDP_gluc_dehyt dTDP 29.8 2.8E+02 0.006 25.9 8.3 97 191-288 14-124 (317)
152 PRK00648 Maf-like protein; Rev 29.7 3.8E+02 0.0083 24.4 8.8 42 247-288 63-107 (191)
153 PRK06027 purU formyltetrahydro 29.6 1.6E+02 0.0035 28.6 6.7 67 187-259 100-178 (286)
154 KOG1401 Acetylornithine aminot 29.5 6.3E+02 0.014 26.2 10.9 104 172-285 118-244 (433)
155 PRK01372 ddl D-alanine--D-alan 29.4 1.9E+02 0.0042 27.5 7.2 36 221-256 29-65 (304)
156 PRK08591 acetyl-CoA carboxylas 29.3 1.9E+02 0.0042 29.4 7.6 68 188-262 13-89 (451)
157 PRK13896 cobyrinic acid a,c-di 29.3 3E+02 0.0065 28.5 8.9 90 190-291 20-115 (433)
158 PRK05414 urocanate hydratase; 29.3 4E+02 0.0086 28.4 9.6 37 85-121 218-255 (556)
159 PRK14106 murD UDP-N-acetylmura 29.2 3.2E+02 0.007 27.7 9.2 60 190-256 18-77 (450)
160 PRK11557 putative DNA-binding 29.0 2.5E+02 0.0054 26.5 7.8 80 204-292 130-213 (278)
161 TIGR01214 rmlD dTDP-4-dehydror 29.0 1.6E+02 0.0034 27.5 6.4 26 265-290 76-101 (287)
162 TIGR00075 hypD hydrogenase exp 28.9 3.8E+02 0.0082 27.3 9.1 50 234-288 176-225 (369)
163 TIGR01228 hutU urocanate hydra 28.9 4.3E+02 0.0094 28.0 9.7 88 84-178 208-317 (545)
164 PRK05967 cystathionine beta-ly 28.9 2.7E+02 0.0058 28.4 8.4 82 192-286 95-184 (395)
165 PLN02206 UDP-glucuronate decar 28.8 2E+02 0.0043 29.7 7.5 109 168-290 118-234 (442)
166 cd03377 TPP_PFOR_PNO Thiamine 28.8 6.3E+02 0.014 25.6 12.0 40 171-214 153-192 (365)
167 TIGR01521 FruBisAldo_II_B fruc 28.4 1.3E+02 0.0028 30.3 5.8 102 185-293 25-144 (347)
168 PLN03209 translocon at the inn 28.2 2.3E+02 0.005 30.6 7.9 50 239-290 153-208 (576)
169 PF05159 Capsule_synth: Capsul 28.2 3.2E+02 0.0069 25.7 8.4 85 187-291 140-228 (269)
170 PRK05634 nucleosidase; Provisi 28.1 47 0.001 30.1 2.5 25 263-287 127-151 (185)
171 PF04321 RmlD_sub_bind: RmlD s 28.0 58 0.0013 31.2 3.3 98 171-295 2-107 (286)
172 PF13685 Fe-ADH_2: Iron-contai 28.0 19 0.00042 34.4 -0.0 83 201-292 20-110 (250)
173 PRK05839 hypothetical protein; 27.8 6E+02 0.013 25.0 10.7 70 205-286 111-193 (374)
174 cd01987 USP_OKCHK USP domain i 27.7 3.2E+02 0.0068 21.8 9.0 62 223-287 57-123 (124)
175 PRK09195 gatY tagatose-bisphos 27.6 1.4E+02 0.003 29.2 5.8 96 186-286 28-133 (284)
176 TIGR01777 yfcH conserved hypot 27.5 2.2E+02 0.0048 26.3 7.2 37 246-282 56-102 (292)
177 PRK10076 pyruvate formate lyas 27.4 91 0.002 29.0 4.3 82 175-258 6-100 (213)
178 cd00555 Maf Nucleotide binding 27.3 4.6E+02 0.01 23.6 8.8 79 199-287 17-101 (180)
179 PRK05443 polyphosphate kinase; 27.3 1.1E+02 0.0023 33.8 5.5 48 187-234 380-428 (691)
180 cd05006 SIS_GmhA Phosphoheptos 27.3 4.2E+02 0.0091 23.1 8.5 32 221-254 121-152 (177)
181 PF01175 Urocanase: Urocanase; 27.0 4.3E+02 0.0094 28.1 9.4 38 84-121 207-245 (546)
182 PRK15062 hydrogenase isoenzyme 27.0 4.4E+02 0.0096 26.7 9.3 49 235-288 171-219 (364)
183 PRK06084 O-acetylhomoserine am 27.0 5.9E+02 0.013 26.0 10.6 85 192-286 89-178 (425)
184 TIGR01326 OAH_OAS_sulfhy OAH/O 26.9 5.1E+02 0.011 26.3 10.1 89 189-287 85-178 (418)
185 PF02589 DUF162: Uncharacteris 26.9 49 0.0011 29.5 2.4 51 246-297 83-134 (189)
186 TIGR00853 pts-lac PTS system, 26.7 2.7E+02 0.0058 22.3 6.5 55 223-288 26-82 (95)
187 cd01523 RHOD_Lact_B Member of 26.7 1.6E+02 0.0035 22.9 5.2 13 168-180 60-72 (100)
188 TIGR03217 4OH_2_O_val_ald 4-hy 26.5 1.8E+02 0.0038 29.0 6.4 64 169-240 103-168 (333)
189 PF13090 PP_kinase_C: Polyphos 26.4 79 0.0017 31.8 3.9 50 185-235 48-99 (352)
190 PRK05613 O-acetylhomoserine am 26.4 6.4E+02 0.014 25.9 10.8 85 193-287 101-191 (437)
191 PRK15490 Vi polysaccharide bio 26.4 4.8E+02 0.01 28.2 9.9 34 202-236 205-238 (578)
192 PRK07178 pyruvate carboxylase 26.3 1.8E+02 0.0039 30.1 6.8 74 188-262 13-88 (472)
193 PF01975 SurE: Survival protei 26.1 64 0.0014 29.6 3.0 51 241-291 85-135 (196)
194 PRK00770 deoxyhypusine synthas 26.0 1.1E+02 0.0024 31.2 5.0 115 168-290 51-197 (384)
195 TIGR03127 RuMP_HxlB 6-phospho 25.8 2.1E+02 0.0046 25.0 6.3 79 204-292 32-110 (179)
196 COG0424 Maf Nucleotide-binding 25.6 2.8E+02 0.006 25.6 7.0 77 197-283 19-101 (193)
197 cd01972 Nitrogenase_VnfE_like 25.6 7.2E+02 0.016 25.3 15.7 86 187-287 303-399 (426)
198 PF04705 TSNR_N: Thiostrepton- 25.5 73 0.0016 26.4 2.8 51 191-244 38-89 (115)
199 PRK15005 universal stress prot 25.4 84 0.0018 26.0 3.5 39 244-287 104-143 (144)
200 cd05212 NAD_bind_m-THF_DH_Cycl 25.3 3.3E+02 0.0073 23.5 7.2 64 188-255 11-79 (140)
201 cd00757 ThiF_MoeB_HesA_family 25.2 5.4E+02 0.012 23.7 10.3 58 220-288 80-143 (228)
202 KOG1576 Predicted oxidoreducta 25.1 1.6E+02 0.0034 29.0 5.5 80 170-258 197-294 (342)
203 PRK02929 L-arabinose isomerase 24.9 7.7E+02 0.017 26.1 11.1 59 170-235 74-148 (499)
204 PF13336 AcetylCoA_hyd_C: Acet 24.9 38 0.00082 30.1 1.2 20 338-357 108-127 (154)
205 cd01491 Ube1_repeat1 Ubiquitin 24.6 5.4E+02 0.012 25.1 9.3 110 153-288 9-137 (286)
206 PF00670 AdoHcyase_NAD: S-aden 24.5 2.4E+02 0.0052 25.2 6.2 62 168-253 22-84 (162)
207 PRK13399 fructose-1,6-bisphosp 24.5 1.4E+02 0.0031 30.0 5.4 101 186-293 28-146 (347)
208 PRK10310 PTS system galactitol 24.5 3.1E+02 0.0066 21.8 6.4 31 224-256 27-59 (94)
209 COG0299 PurN Folate-dependent 24.3 3.5E+02 0.0076 25.1 7.4 65 185-253 9-85 (200)
210 PRK12475 thiamine/molybdopteri 24.3 7.1E+02 0.015 24.7 11.5 112 152-288 13-148 (338)
211 PF08032 SpoU_sub_bind: RNA 2' 24.2 2.3E+02 0.0051 20.8 5.4 51 192-243 7-58 (76)
212 TIGR01325 O_suc_HS_sulf O-succ 24.2 7.2E+02 0.016 24.7 11.2 88 190-286 83-174 (380)
213 COG0616 SppA Periplasmic serin 24.1 1.7E+02 0.0037 28.8 5.8 108 171-287 60-187 (317)
214 PF01113 DapB_N: Dihydrodipico 23.8 3.3E+02 0.0072 22.5 6.8 94 171-290 2-100 (124)
215 COG1440 CelA Phosphotransferas 23.6 2.2E+02 0.0049 23.5 5.4 39 238-287 41-79 (102)
216 COG5017 Uncharacterized conser 23.4 1.8E+02 0.0038 25.7 5.0 54 168-234 65-122 (161)
217 COG0771 MurD UDP-N-acetylmuram 23.3 4.5E+02 0.0098 27.4 8.9 78 190-285 20-97 (448)
218 PRK11173 two-component respons 23.3 3.3E+02 0.0072 24.3 7.3 80 203-291 4-84 (237)
219 PF02302 PTS_IIB: PTS system, 23.3 2.7E+02 0.0059 21.2 5.8 33 224-258 24-58 (90)
220 PRK05968 hypothetical protein; 23.2 7.6E+02 0.017 24.7 11.5 86 192-287 94-183 (389)
221 TIGR01324 cysta_beta_ly_B cyst 23.1 7.7E+02 0.017 24.7 11.3 85 189-286 78-170 (377)
222 PRK14362 Maf-like protein; Pro 22.9 5.9E+02 0.013 23.6 8.8 41 248-288 72-115 (207)
223 COG1088 RfbB dTDP-D-glucose 4, 22.9 3E+02 0.0066 27.4 7.0 99 183-282 6-117 (340)
224 PRK00148 Maf-like protein; Rev 22.9 5.7E+02 0.012 23.3 8.6 40 248-287 60-102 (194)
225 COG0074 SucD Succinyl-CoA synt 22.9 1.7E+02 0.0036 28.8 5.2 93 189-286 78-174 (293)
226 PRK15456 universal stress prot 22.8 1.2E+02 0.0026 25.2 4.0 40 244-287 102-141 (142)
227 PRK01710 murD UDP-N-acetylmura 22.8 6.1E+02 0.013 26.0 9.8 78 191-285 28-105 (458)
228 cd01748 GATase1_IGP_Synthase T 22.6 3E+02 0.0065 24.6 6.8 69 219-292 13-82 (198)
229 PF05728 UPF0227: Uncharacteri 22.5 4.2E+02 0.0092 23.9 7.7 28 267-294 67-94 (187)
230 PRK15482 transcriptional regul 22.3 4.6E+02 0.0099 24.9 8.3 63 221-290 154-218 (285)
231 cd05710 SIS_1 A subgroup of th 22.1 4.3E+02 0.0093 21.6 7.1 60 224-290 21-83 (120)
232 PRK09196 fructose-1,6-bisphosp 22.0 1.1E+02 0.0023 30.8 3.9 101 186-293 28-146 (347)
233 CHL00148 orf27 Ycf27; Reviewed 21.9 4.3E+02 0.0093 23.3 7.7 83 201-292 5-88 (240)
234 PRK00884 Maf-like protein; Rev 21.9 6.2E+02 0.013 23.1 8.9 40 248-287 61-103 (194)
235 PRK04056 Maf-like protein; Rev 21.9 5.9E+02 0.013 22.9 8.9 80 199-288 18-103 (180)
236 PRK04694 Maf-like protein; Rev 21.9 4.8E+02 0.01 23.7 7.9 82 199-287 18-105 (190)
237 PRK12738 kbaY tagatose-bisphos 21.8 1.5E+02 0.0032 29.0 4.7 98 186-286 28-133 (286)
238 TIGR00715 precor6x_red precorr 21.8 7E+02 0.015 23.7 9.6 89 181-287 133-229 (256)
239 PRK11070 ssDNA exonuclease Rec 21.7 8.3E+02 0.018 26.3 10.8 20 268-287 138-157 (575)
240 cd05017 SIS_PGI_PMI_1 The memb 21.7 3.9E+02 0.0084 21.7 6.8 58 168-238 43-100 (119)
241 PRK06234 methionine gamma-lyas 21.7 8.1E+02 0.017 24.6 10.3 87 191-286 94-186 (400)
242 PLN02166 dTDP-glucose 4,6-dehy 21.5 3.7E+02 0.008 27.6 7.9 107 169-289 120-234 (436)
243 PRK08114 cystathionine beta-ly 21.5 4.1E+02 0.0089 27.1 8.1 84 191-286 92-184 (395)
244 PRK12857 fructose-1,6-bisphosp 21.5 1.7E+02 0.0037 28.5 5.1 96 186-286 28-133 (284)
245 PRK14368 Maf-like protein; Pro 21.3 4E+02 0.0087 24.4 7.3 78 199-287 23-106 (193)
246 PRK09468 ompR osmolarity respo 21.2 4.2E+02 0.0091 23.5 7.5 81 202-291 5-87 (239)
247 cd01967 Nitrogenase_MoFe_alpha 21.1 8.3E+02 0.018 24.4 11.2 81 188-288 297-380 (406)
248 PRK13527 glutamine amidotransf 21.1 2.2E+02 0.0047 25.7 5.5 82 203-292 3-88 (200)
249 PRK11337 DNA-binding transcrip 21.1 7.2E+02 0.016 23.6 13.8 61 222-291 160-224 (292)
250 PRK07998 gatY putative fructos 21.1 2E+02 0.0043 28.1 5.5 106 168-284 16-131 (283)
251 TIGR00514 accC acetyl-CoA carb 21.0 2.6E+02 0.0055 28.7 6.6 68 188-262 13-89 (449)
252 TIGR01133 murG undecaprenyldip 20.9 6.1E+02 0.013 24.1 9.0 77 191-286 19-118 (348)
253 PRK13856 two-component respons 20.8 4E+02 0.0087 23.9 7.4 77 204-289 3-80 (241)
254 PF05706 CDKN3: Cyclin-depende 20.7 1.5E+02 0.0031 26.8 4.1 12 168-179 132-143 (168)
255 PLN02509 cystathionine beta-ly 20.6 9E+02 0.019 25.2 10.6 85 190-286 161-252 (464)
256 PRK13937 phosphoheptose isomer 20.4 6.2E+02 0.013 22.6 10.7 31 221-253 126-156 (188)
257 TIGR03705 poly_P_kin polyphosp 20.3 1.5E+02 0.0032 32.6 4.8 47 187-233 371-418 (672)
258 PF04413 Glycos_transf_N: 3-De 20.3 2.6E+02 0.0057 25.1 5.8 102 170-290 22-127 (186)
259 TIGR00393 kpsF KpsF/GutQ famil 20.2 4.2E+02 0.009 24.6 7.5 63 221-290 19-83 (268)
260 PRK05690 molybdopterin biosynt 20.2 7.2E+02 0.016 23.3 10.1 111 152-287 21-153 (245)
261 PRK12388 fructose-1,6-bisphosp 20.2 2E+02 0.0042 28.6 5.2 46 194-243 144-192 (321)
262 KOG3076 5'-phosphoribosylglyci 20.1 4.6E+02 0.01 24.3 7.2 81 185-293 15-99 (206)
263 COG1167 ARO8 Transcriptional r 20.1 6.3E+02 0.014 26.1 9.3 102 170-286 157-265 (459)
264 PRK00451 glycine dehydrogenase 20.1 5.1E+02 0.011 26.2 8.6 76 203-286 155-238 (447)
265 PRK09028 cystathionine beta-ly 20.0 9.2E+02 0.02 24.4 10.8 82 192-286 92-181 (394)
No 1
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.6e-108 Score=774.62 Aligned_cols=344 Identities=50% Similarity=0.738 Sum_probs=327.8
Q ss_pred CeeeEEEeCC-eEEEEecCCCCCeEEEEEecChHHHHHHHHhhHhcCcHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHH
Q 017312 12 SLQSICYRRG-SLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFL 90 (373)
Q Consensus 12 ~~~~i~~~~~-~l~ildq~~lP~~~~~~~~~~~~~~~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l 90 (373)
++++|+|+++ +|.|||||+||++.+|+.|++++|++.|||+|+|||||+||++||||+++++++.. ...+.+|+.+.|
T Consensus 2 ~~~~i~w~~~~~v~llDQr~LP~e~~~v~~~~~~dva~AIk~M~VRGAPAIgv~AayG~alaa~~~~-~~~~~~e~~~~l 80 (346)
T COG0182 2 KLRPIEWKDDGSVKLLDQRLLPFEEKYVECKTYEDVAEAIKDMVVRGAPAIGVAAAYGLALAARESK-NDSKGEEFIEAL 80 (346)
T ss_pred CceeEEEcCCCeEEEEecccCCceEEEEEeccHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHhcc-cccchHHHHHHH
Confidence 5789999988 79999999999999999999999999999999999999999999999999998862 133468999999
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCc
Q 017312 91 GNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKF 170 (373)
Q Consensus 91 ~~~~~~L~~~RPtav~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~g~~~i~~~~~~~~~ 170 (373)
.++.+.|.++|||++||+|++++|++...+.. +.++.++.+.+++.++.+|+++.|++|+++|+++|. +++
T Consensus 81 e~a~~~l~~tRPTAvNLfwal~rm~~~~~~~~----~v~~~~~~~~~eA~~i~~ED~e~n~~iG~~G~~ll~-----~~~ 151 (346)
T COG0182 81 EKAAETLKSTRPTAVNLFWALDRMLNAAKEAI----EVKEPKESILQEAEEIAEEDLEANRAIGENGAELLP-----DGD 151 (346)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHHHHHhhcc----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cCC
Confidence 99999999999999999999999999887652 478899999999999999999999999999999999 899
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCE
Q 017312 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSA 250 (373)
Q Consensus 171 ~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~ 250 (373)
+||||||+|+|||+||||+++++|.||++|+..+||++||||++||+|||+|||.+.|||+|+|+|||+|++|+++.||+
T Consensus 152 ~VLThCNaGaLAt~~~GTAlgviR~a~~~gk~i~v~a~ETRP~lQGARLTawEL~~~GIpvtLItD~aag~~M~~g~Id~ 231 (346)
T COG0182 152 TVLTHCNAGALATVGYGTALGVIRSAHEEGKDIRVFADETRPYLQGARLTAWELVQDGIPVTLITDNAAGHLMQQGMIDA 231 (346)
T ss_pred eEEeeecCCceeecCccchHHHHHHHHHCCCeeEEEeCCCccccccceeeHHHHhhcCCceEEEeccHHHHHHHhCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCce
Q 017312 251 VIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGIS 330 (373)
Q Consensus 251 VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~ 330 (373)
|+||||||++||+++||||||++|++||+|||||||++|.++||+...+|++|+||+|||+||+.++ |.+++|++++
T Consensus 232 viVGADRI~~nGdvaNKIGTY~lAvlAk~~gIPFyVaAP~sTiD~~~~~G~~I~IEER~p~Ev~~v~---g~riap~~v~ 308 (346)
T COG0182 232 VIVGADRIAANGDVANKIGTYQLAVLAKHHGIPFYVAAPLSTIDFELKSGEDIPIEERDPEEVLEVG---GVRIAPEGVE 308 (346)
T ss_pred EEEccceeecCCcchhhhhHHHHHHHHHHcCCCeEEEcccCccccccCCCCccceeecCHHHeEeec---cEEeCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 8899999999
Q ss_pred eecceeeecCCCCccEEEeCCCCcCCCCCCccccHHHHHhh
Q 017312 331 VWNPAFDVTPANLITGIITEKGVVTKAGADDAFDIKDFIQK 371 (373)
Q Consensus 331 v~np~fDvtP~~lIt~iITE~Gi~~p~~~~~~~~~~~~~~~ 371 (373)
++||+||+||++|||+||||+|++.|+ .. .+++.++++
T Consensus 309 ~yNPAFDvTP~~lItgIITEkGv~~p~-~~--~~~~~~~~~ 346 (346)
T COG0182 309 AYNPAFDVTPPELITGIITEKGVFTPP-FE--ENLKLLFER 346 (346)
T ss_pred ccCccccCChHHhcceeeeccceecCc-hh--hhHHHHhcC
Confidence 999999999999999999999999997 23 678887763
No 2
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=100.00 E-value=6.5e-98 Score=730.03 Aligned_cols=342 Identities=43% Similarity=0.654 Sum_probs=319.9
Q ss_pred eeeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhhHhcCcHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHH
Q 017312 13 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGN 92 (373)
Q Consensus 13 ~~~i~~~~~~l~ildq~~lP~~~~~~~~~~~~~~~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~ 92 (373)
+++|+|+++.|+|||||+||++++|+.|++++|+++||++|+|||||+||++||+||++++++.. ..+..++.+.|++
T Consensus 14 ~~~i~~~~~~l~ilDQ~~lP~~~~~~~~~~~~~v~~aI~~M~vRGApaIgvaAa~glal~~~~~~--~~~~~~~~~~l~~ 91 (356)
T PRK08334 14 PRSVEYEEGKVYMIDQRLLPREFKVIELRTVEEVAEAIKTMTVRGAPAIGAAAAFGLALYAETSK--AKTKDEFMDGFYK 91 (356)
T ss_pred CccEEEcCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCcccCcHHHHHHHHHHHHHHHHhcc--cCCHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999998752 2467889999999
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEE
Q 017312 93 KLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSV 172 (373)
Q Consensus 93 ~~~~L~~~RPtav~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~g~~~i~~~~~~~~~~I 172 (373)
..++|.++|||++||+|++++|++.+.... ..+.+++++.+++.++.|++++.+++++|+++|+++|. +|+ |
T Consensus 92 ~~~~L~~~RPTavnL~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~a~~i~~~d~~~~~~Ig~~g~~li~-----dg~-I 163 (356)
T PRK08334 92 AYETLKNTRPTAVNLFWALNRIKKLVEEHL--EDPLDEIKRLIVEEAQKIADEDVEANLRMGHYGAEVLP-----EGN-V 163 (356)
T ss_pred HHHHHHHcCCcHHhHHHHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCC-E
Confidence 999999999999999999999998876431 24688999999999999999999999999999999999 788 9
Q ss_pred EEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEE
Q 017312 173 LTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVI 252 (373)
Q Consensus 173 LT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~Vi 252 (373)
|||||+|+|||+|||||+++|+.|+++|+.++|||+||||++||.|||+|+|.+.|||||+|+|||++|+|++++||+||
T Consensus 164 LTHcnaG~LAt~~~gTal~vi~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsav~~~M~~~~Vd~Vi 243 (356)
T PRK08334 164 LTHCNAGSLATVHLGTVGAVLRVMHKDGTLKLLWVDETRPVLQGARLSAWEYHYDGIPLKLISDNMAGFVMQQGKVDAII 243 (356)
T ss_pred EEecCcchhhhcccchHHHHHHHHHHcCCeEEEEECCCCchhhHHHHHHHHHHHCCCCEEEEehhHHHHHhhhcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceee
Q 017312 253 VGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVW 332 (373)
Q Consensus 253 vGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~ 332 (373)
||||+|++||+++||+|||++|++||+|||||||+||++|||+..++|+++++|+|+|+|+..++ |.... ++++++
T Consensus 244 vGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPfyV~Ap~~t~d~~~~~~~~i~iE~r~~~ev~~~~---~~~~~-~~~~v~ 319 (356)
T PRK08334 244 VGADRIVANGDFANKIGTYTLAVLAKEHGIPFFTVAPLSTIDMSLKSGKEIPIEERSPEEVLTCG---GCRIA-PDVDVY 319 (356)
T ss_pred ECccEEecCCCEeehhhHHHHHHHHHHhCCCEEEEcccCccCCCCCCCcccccccCChHHheecc---CcccC-CCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999875 33333 489999
Q ss_pred cceeeecCCCCccEEEeCCCCcCCCCCCccccHHHHHhh
Q 017312 333 NPAFDVTPANLITGIITEKGVVTKAGADDAFDIKDFIQK 371 (373)
Q Consensus 333 np~fDvtP~~lIt~iITE~Gi~~p~~~~~~~~~~~~~~~ 371 (373)
||+||+|||+|||+||||+|+++|+ +. .++++++++
T Consensus 320 NPaFDvTPp~lIt~iITE~Gv~~P~-~~--~~~~~~~~~ 355 (356)
T PRK08334 320 NPAFDVTPHKYLTGIITDRGVVWPP-FE--RNLKKLFEE 355 (356)
T ss_pred cccccCCCHHHCCEEEcCCCccCCc-hH--HHHHHHhcc
Confidence 9999999999999999999999987 33 578887764
No 3
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=100.00 E-value=8.2e-98 Score=731.54 Aligned_cols=341 Identities=47% Similarity=0.707 Sum_probs=322.2
Q ss_pred eeeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhhHhcCcHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHH
Q 017312 13 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGN 92 (373)
Q Consensus 13 ~~~i~~~~~~l~ildq~~lP~~~~~~~~~~~~~~~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~ 92 (373)
+++|.|++++|+|||||+||++++|+.|++++|++++|++|+|||||+||++||+||+++++++. ..+..++.+.|++
T Consensus 3 ~~~~~~~~~~l~~ldq~~lP~~~~~~~~~~~~~v~~aI~~m~vrGApaig~aaa~~lal~~~~~~--~~~~~~~~~~l~~ 80 (344)
T PRK05720 3 PRPVAWKDGAVRILDQRKLPHEVEYVELTTAEEVADAIRDMVVRGAPAIGIAAAYGMALAAREDA--SDDGEEFLKKLEE 80 (344)
T ss_pred cceEEEeCCEEEEEecCCCCCeeEEEEeCCHHHHHHHHHhCeecCCcHHHHHHHHHHHHHHhhcc--CCCHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999998752 3467889999999
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEE
Q 017312 93 KLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSV 172 (373)
Q Consensus 93 ~~~~L~~~RPtav~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~g~~~i~~~~~~~~~~I 172 (373)
++++|.++|||++||+|+++++++.+... +.++.++.+++.+++|++|+.+++++|+++|+++|. +|++|
T Consensus 81 ~~~~L~~~RPtavnL~~ai~~~~~~i~~~-----~~~~~~~~l~~~a~~~~~e~~~~~~~I~~~g~~~I~-----~g~~I 150 (344)
T PRK05720 81 AAAYLAASRPTAVNLFWALDRMREVLAPL-----PGAERKAALEEEAIEIHEEDVEINRAIGEHGLTLIR-----KGQGI 150 (344)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CCCEE
Confidence 99999999999999999999999887542 578999999999999999999999999999999999 89999
Q ss_pred EEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEE
Q 017312 173 LTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVI 252 (373)
Q Consensus 173 LT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~Vi 252 (373)
|||||||+|+|+|||||+++|+.|+++|++|+|||+||||++||.|+|+|+|.+.|||||+|+|||++++|++++||+||
T Consensus 151 LThc~sg~lat~~~gTal~~i~~A~~~gk~~~V~v~EsRP~~qG~~lta~eL~~~GI~vtlI~Dsa~~~~M~~~~vd~Vi 230 (344)
T PRK05720 151 LTHCNAGWLATAGYGTALAPIYAAKEKGIDIHVYADETRPRLQGARLTAWELYQAGIDVTVITDNMAAHLMQTGKIDAVI 230 (344)
T ss_pred EEecCCCcceecchhHHHHHHHHHHHcCCceEEEEcCCCChhhhHHHHHHHHHHCCCCEEEEcccHHHHHhcccCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999777899999
Q ss_pred EcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceee
Q 017312 253 VGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVW 332 (373)
Q Consensus 253 vGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~ 332 (373)
+|||+|++||+++||+|||++|++||+|+|||||+||+||||+.++.|+++++|+|+|+|+..++ |.+..+++++++
T Consensus 231 vGAd~I~~nG~v~NkiGT~~lAl~Ak~~~vPfyV~a~~~kfd~~~~~g~~i~iE~r~~~ev~~~~---~~~~~~~~v~v~ 307 (344)
T PRK05720 231 VGADRIAANGDVANKIGTYQLAIAAKYHGVPFYVAAPSSTIDLTLADGKEIPIEERDPEEVTEVG---GVRIAPEGVKVY 307 (344)
T ss_pred EcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccccccCcCCCCCcccccccCCHHHhcccC---CcccCCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999876 556678899999
Q ss_pred cceeeecCCCCccEEEeCCCCcCCCCCCccccHHHHHhh
Q 017312 333 NPAFDVTPANLITGIITEKGVVTKAGADDAFDIKDFIQK 371 (373)
Q Consensus 333 np~fDvtP~~lIt~iITE~Gi~~p~~~~~~~~~~~~~~~ 371 (373)
||+||+|||+|||+||||+|+++|+ +. .+++++++.
T Consensus 308 Np~FDvTP~~lIt~iITE~Gv~~p~-~~--~~~~~~~~~ 343 (344)
T PRK05720 308 NPAFDVTPAELITGIITEKGIVAPP-DT--ANLAALFPE 343 (344)
T ss_pred cccccCCCHHHCCEEEcCCCccCcc-HH--HHHHHHhcc
Confidence 9999999999999999999999997 23 578877754
No 4
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=1.8e-97 Score=730.22 Aligned_cols=344 Identities=37% Similarity=0.561 Sum_probs=322.6
Q ss_pred eeeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhhHhcCcHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHH
Q 017312 13 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGN 92 (373)
Q Consensus 13 ~~~i~~~~~~l~ildq~~lP~~~~~~~~~~~~~~~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~ 92 (373)
+++|+|+++.|+|||||+||++++|+.|++++|+++||++|+|||||+||++|||||++++++. ...+.+++.+.|++
T Consensus 16 ~~~i~~~~~~l~~lDq~~lP~~~~~~~~~~~~~v~~aI~~M~vRGApaigiaAa~glal~~~~~--~~~~~~~~~~~l~~ 93 (363)
T PRK05772 16 LLPIIWKDNTLTLLDQSLLPFETVYVDLKTVEEVALAIRNMQVRGAPAIGITAGYGMVLALIEN--NVKTLDDAIRELTR 93 (363)
T ss_pred CceEEecCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCcccCCcHHHHHHHHHHHHHHHhc--cCCCHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999875 23467889999999
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCc
Q 017312 93 KLEYLVSSRPTAVNLSDAAAKLKEIISKAAA--TASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKF 170 (373)
Q Consensus 93 ~~~~L~~~RPtav~l~nai~~~~~~i~~~~~--~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~g~~~i~~~~~~~~~ 170 (373)
..++|.++|||++||+|++++|++.+....+ ...+.+++++.+.+.++.|++++++++++|+++|+++|. +|+
T Consensus 94 ~~~~L~~aRPTaVnL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~~~~I~~~g~~~I~-----dg~ 168 (363)
T PRK05772 94 AKTILDSARPTAVNLVWATSRMLNKAKNTVESGNAKSVNELIELLKVEAKKIFEEEYDAEIQMGLYGLEKLN-----DGD 168 (363)
T ss_pred HHHHHHhcCCcHHhHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCC
Confidence 9999999999999999999999998875421 124788999999999999999999999999999999999 899
Q ss_pred EEEEecCCCcccc-cccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCC
Q 017312 171 SVLTHCNTGSLAT-AGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVS 249 (373)
Q Consensus 171 ~ILT~~~sgslat-~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd 249 (373)
+||||||||+||| +||||++++|+.|+++|++|+|||+||||++||.|||+|+|.+.|||||+|+|||++|+|++++||
T Consensus 169 ~ILThcnsg~Lat~~g~gtal~~i~~a~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GIpvtlI~Dsa~~~~m~~~~Vd 248 (363)
T PRK05772 169 TVLTQCNAGGLATGTGLGTALAPVKLAKALGMSVSVIAPETRPWLQGSRLTVYELMEEGIKVTLITDTAVGLVMYKDMVN 248 (363)
T ss_pred EEEEecCCcchhhccccccHHHHHHHHHHCCCeEEEEECCCCccchhHHHHHHHHHHCCCCEEEEehhHHHHHHhhcCCC
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCc
Q 017312 250 AVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGI 329 (373)
Q Consensus 250 ~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~ 329 (373)
+||+|||+|++||+++||+|||++|++||+|||||||+||++|||+.++. +++++|+|+|+|+.... |.+..++++
T Consensus 249 ~VivGAD~I~~NG~v~NKiGTy~lA~~Ak~~~vPfyV~ap~~k~d~~~~~-~~i~ieer~p~ev~~~~---~~~~~~~~~ 324 (363)
T PRK05772 249 NVMVGADRILRDGHVFNKIGTFKEAVIAHELGIPFYALAPTSTFDLKSDV-NDVKIEERDPNEVRTIR---GVPITPEDV 324 (363)
T ss_pred EEEECccEEecCCCEeehhhhHHHHHHHHHhCCCEEEEccccccCccccc-cccccccCCHHHhcccC---CceecCCCc
Confidence 99999999999999999999999999999999999999999999999877 78999999999998876 556778999
Q ss_pred eeecceeeecCCCCccEEEeCCCCcCCCCCCccccHHHHHh
Q 017312 330 SVWNPAFDVTPANLITGIITEKGVVTKAGADDAFDIKDFIQ 370 (373)
Q Consensus 330 ~v~np~fDvtP~~lIt~iITE~Gi~~p~~~~~~~~~~~~~~ 370 (373)
+++||+||+|||+|||+||||+|+++|+ +. .+++++++
T Consensus 325 ~v~Np~FDvTP~~lIt~iITE~Gv~~p~-~~--~~~~~~~~ 362 (363)
T PRK05772 325 NVYNPVFDVTPPKYITGIITEKGIIYPP-FH--KNIRKILE 362 (363)
T ss_pred eeeccCccCCCHHHCCEEEccCCccCCc-hH--HHHHHHhc
Confidence 9999999999999999999999999987 22 67877764
No 5
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=100.00 E-value=2.6e-97 Score=723.42 Aligned_cols=327 Identities=57% Similarity=0.841 Sum_probs=312.9
Q ss_pred eeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhhHhcCcHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHH
Q 017312 14 QSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNK 93 (373)
Q Consensus 14 ~~i~~~~~~l~ildq~~lP~~~~~~~~~~~~~~~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~ 93 (373)
++|+|++++|+|||||+||++++|+.|++++|++++||+|+|||||+||++|||||++++++. .+..++.+.|+++
T Consensus 1 ~~i~~~~~~l~~ldq~~lP~~~~~~~~~~~~~~~~aI~~m~vRGApaig~~aa~~~~l~~~~~----~~~~~~~~~l~~~ 76 (331)
T TIGR00512 1 RAIKWNRGSLELLDQRLLPHESEYIEVTTVEDVADAIRDMRVRGAPAIGIVAAYGLALAAREA----DEREEFKALLEEK 76 (331)
T ss_pred CCEEEeCCEEEEEecCCCCCeeEEEEeCCHHHHHHHHHhCcccCchHHHHHHHHHHHHHHhhc----CCHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999998874 3678999999999
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCc---
Q 017312 94 LEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKF--- 170 (373)
Q Consensus 94 ~~~L~~~RPtav~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~g~~~i~~~~~~~~~--- 170 (373)
+++|.++|||++||+||+++|++.+... .+.+++++.+++.+++|++|+.+++++|+++|+++|. +|+
T Consensus 77 ~~~L~~~RPtavnL~~A~~~~~~~i~~~----~~~~~~k~~l~e~a~~~~~e~~~~~~~I~~~g~~~I~-----dg~~~~ 147 (331)
T TIGR00512 77 LQYLVSSRPTAVNLSWALDRMRAALEAA----KTVADIKEALLAEAERILEEDLEDNRAIGENGAALIK-----KGVAAP 147 (331)
T ss_pred HHHHHHhCCcHhhHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCCC
Confidence 9999999999999999999999888652 4788999999999999999999999999999999999 899
Q ss_pred -EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCC
Q 017312 171 -SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVS 249 (373)
Q Consensus 171 -~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd 249 (373)
+||||||||+|||+|||||+++|+.|+++|++|+|||+||||++||.|+|+|+|.+.|||||+|+|||++|+|++++||
T Consensus 148 ~~ILThcnsg~lat~~~gtal~~l~~A~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsav~~~m~~~~vd 227 (331)
T TIGR00512 148 LRVLTHCNTGSLATAGYGTALGVIRSAHEKGRLEHVYADETRPRLQGARLTAWELVQEGIPATLITDSMAAHLMKHGEVD 227 (331)
T ss_pred ceEEeecCCccccccccchHHHHHHHHHHcCCceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEcccHHHHHhcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999666999
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCc
Q 017312 250 AVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGI 329 (373)
Q Consensus 250 ~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~ 329 (373)
+|++|||+|++||+++||+|||++|++||+|||||||+||+||||+.++.|+++++|+|+|+|+..+. |.+..++++
T Consensus 228 ~VivGAd~v~~nG~v~nkiGT~~lA~~Ak~~~vPfyV~a~~~kfd~~~~~~~~i~iE~r~p~ev~~~~---g~~~~~~~~ 304 (331)
T TIGR00512 228 AVIVGADRIAANGDTANKIGTYQLAVLAKHHGVPFYVAAPTSTIDLETKDGAEIPIEERPPEEVTHVG---GVRIAPPGI 304 (331)
T ss_pred EEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccccccccCCCCccccccccCCHHHhcccC---CcccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999998876 556678899
Q ss_pred eeecceeeecCCCCccEEEeCCCCcCC
Q 017312 330 SVWNPAFDVTPANLITGIITEKGVVTK 356 (373)
Q Consensus 330 ~v~np~fDvtP~~lIt~iITE~Gi~~p 356 (373)
+++||+||+|||+|||+||||+|+++|
T Consensus 305 ~v~Np~FD~TP~~lIt~iITe~Gv~~p 331 (331)
T TIGR00512 305 DVWNPAFDVTPAELITGIITEKGVITP 331 (331)
T ss_pred eeecccccCCCHHHCCEEEccCCccCC
Confidence 999999999999999999999999986
No 6
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=5.7e-96 Score=715.97 Aligned_cols=329 Identities=42% Similarity=0.589 Sum_probs=310.9
Q ss_pred eeeEEEeC--CeEEEEecCCCCCeEEEEEecChHHHHHHHHhhHhcCcHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHH
Q 017312 13 LQSICYRR--GSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFL 90 (373)
Q Consensus 13 ~~~i~~~~--~~l~ildq~~lP~~~~~~~~~~~~~~~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l 90 (373)
+++|+|++ ++|+|||||+||++++|+.|++++|+++|||+|+|||||+||++|||||++++++. ...+.+++.+.|
T Consensus 1 ~~~i~~~~~~~~l~~ldq~~lP~~~~~~~~~~~~~v~~aI~~m~vRGApaig~aaa~g~~l~~~~~--~~~~~~~~~~~l 78 (339)
T PRK06036 1 MRTIDWNDESNSVKLIDQTLLPEEYKVIECKTLESLCEAIKSLRVRGAPALGAAGGYGIALAARLS--KAKDVDELLKDL 78 (339)
T ss_pred CCcEEEcCCCCeEEEEEcCCCCCeEEEEEeCCHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhc--ccCCHHHHHHHH
Confidence 36899998 99999999999999999999999999999999999999999999999999999875 234778999999
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCc
Q 017312 91 GNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKF 170 (373)
Q Consensus 91 ~~~~~~L~~~RPtav~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~g~~~i~~~~~~~~~ 170 (373)
++++++|.++|||++||+|+++++++.+.. ..+.+++++.+++.+++|++++.+++++|+++|+++|. +|+
T Consensus 79 ~~~~~~L~~aRPTavnL~~a~~r~~~~~~~----~~~~~~~~~~~~e~a~~~~~e~~~~~~~I~~~g~~~I~-----~g~ 149 (339)
T PRK06036 79 KVAAETLKSTRPTAVNLSWGVDRVLKAALD----AEDVEEIRDIALREAERIAEEDVARNKLIGKHGAKLLE-----DGD 149 (339)
T ss_pred HHHHHHHHHhCCcHhhHHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CCC
Confidence 999999999999999999999998875543 24688999999999999999999999999999999999 899
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCE
Q 017312 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSA 250 (373)
Q Consensus 171 ~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~ 250 (373)
+||||||||+|||+|||||+++|+.|+++|++|+|||+||||++||.|||+|+|.+.|||||+|+|||++|+|++++||+
T Consensus 150 ~ILThc~sg~lat~~~gTal~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~ 229 (339)
T PRK06036 150 TVLTHCNAGRLACVDWGTALGVIRSAVEQGKEIKVIACETRPLNQGSRLTTWELMQDNIPVTLITDSMAGIVMRQGMVDK 229 (339)
T ss_pred EEEEecCCccccccccchHHHHHHHHHHcCCceEEEEcCCCchhhHHHHHHHHHHHcCCCEEEEehhHHHHHhccCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997777999
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCce
Q 017312 251 VIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGIS 330 (373)
Q Consensus 251 VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~ 330 (373)
||+|||+|++|| ++||+|||++|++||+|||||||+||++|||+....| ++++|+|+|+|+.... |....+++++
T Consensus 230 VivGAd~I~anG-v~NKiGT~~lA~~Ak~~~vPfyV~ap~s~~d~~~~~g-~i~iE~r~~~Ev~~~~---~~~~~~~~v~ 304 (339)
T PRK06036 230 VIVGADRITRDA-VFNKIGTYTHSVLAKEHEIPFYVAAPLSTFDFEGWEG-SVKIEERDPDELRYCG---KTQIAPKDVP 304 (339)
T ss_pred EEECccchhhcC-eehhhhHHHHHHHHHHhCCCEEEEeecCccCCCcCCC-CcccccCCHHHhcccc---CcccCCCCce
Confidence 999999999997 9999999999999999999999999999999988877 7999999999998876 4556788999
Q ss_pred eecceeeecCCCCccEEEeCCCCcCCC
Q 017312 331 VWNPAFDVTPANLITGIITEKGVVTKA 357 (373)
Q Consensus 331 v~np~fDvtP~~lIt~iITE~Gi~~p~ 357 (373)
++||+||+|||+|||+||||+|+++|+
T Consensus 305 v~Np~FDvTP~~lIt~iITE~Gv~~P~ 331 (339)
T PRK06036 305 VYNPAFDATPMENVTAIITEKGVFYPP 331 (339)
T ss_pred eeCcccccCCHHHCCEEEccCCcccCC
Confidence 999999999999999999999999987
No 7
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-96 Score=677.54 Aligned_cols=343 Identities=60% Similarity=0.888 Sum_probs=323.4
Q ss_pred CCeeeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhhHhcCcHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHH
Q 017312 11 NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFL 90 (373)
Q Consensus 11 ~~~~~i~~~~~~l~ildq~~lP~~~~~~~~~~~~~~~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l 90 (373)
++|++|+|++++|++|||++||+++.|+.+++++|.|.+|++|+|||||+||++++++++.+++.- ...+...+.+++
T Consensus 1 msL~aI~y~~~sl~vLDQllLP~e~kYi~v~~v~d~~~vIk~MqVRGAPaIAivg~Lslaveiq~~--~~~~~ds~~~~i 78 (354)
T KOG1468|consen 1 MSLEAIKYDRGSLEVLDQLLLPYETKYIPVRGVSDAWAVIKSMQVRGAPAIAIVGSLSLAVEIQKK--GFPGSDSLKEFI 78 (354)
T ss_pred CcceeEEecCchHhHHHHhhCcCceeEEEecchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHhhc--cCCchHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999862 234455678999
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCC-C
Q 017312 91 GNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNS-K 169 (373)
Q Consensus 91 ~~~~~~L~~~RPtav~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~g~~~i~~~~~~~-~ 169 (373)
....++|.++|||+|||.|+.+.++..+.+.. .+.+..++.+++..+++++++...|+.|+.+|+++|.+...++ +
T Consensus 79 ~~kl~fLvssRPTAVnl~~aa~~lk~i~~~~~---~~~~~~~~~~~~~~e~ml~~dl~~N~~ig~~g~~~Llq~~~~~~k 155 (354)
T KOG1468|consen 79 INKLNFLVSSRPTAVNLANAANELKPIAASED---KSEKAKREKCISYTEDMLEKDLADNRAIGDNGAKELLQAVKDKGK 155 (354)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999887763 3446778899999999999999999999999999998877654 4
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCC
Q 017312 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVS 249 (373)
Q Consensus 170 ~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd 249 (373)
.+||||||+|||||+||||++++||.+|+.|+..+|||+|||||+||.||||+||....||.|+|+|||+++.|+.++||
T Consensus 156 ltVlThCNTGSLATagyGTALGVIRsLh~~grLehvyctETRPyNQGsRLTA~ELvhekiPatLItDS~vA~~m~~~~vd 235 (354)
T KOG1468|consen 156 LTVLTHCNTGSLATAGYGTALGVIRSLHSLGRLEHVYCTETRPYNQGSRLTAFELVHEKIPATLITDSMVAAAMKNHQVD 235 (354)
T ss_pred eEEEEeecCCchhhcccchHHHHHHHHHhcCCcceEEecccccCCcccchhhHHHHhccCcchhhhhHHHHHHHhcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCc
Q 017312 250 AVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGI 329 (373)
Q Consensus 250 ~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~ 329 (373)
.|++|||||..|||++||||||++|++||||||||||++|..++|...++|++|.||+|+|.|++...|..|.+++++++
T Consensus 236 avvvGADrVarNGDTANKIGTy~LAv~aKhhgipFyvaaP~tsid~~l~tG~eIiIEERp~~Em~~v~gg~~v~Iaapgi 315 (354)
T KOG1468|consen 236 AVVVGADRVARNGDTANKIGTYQLAVLAKHHGIPFYVAAPFTSIDLSLATGDEIIIEERPPAEMTHVTGGEGVRIAAPGI 315 (354)
T ss_pred EEEEcccceeccCcchhhhhhhHHHHHHHhcCCceEEeccccccccccCCCCeeEEeecCchHheeecCCcceEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998755678999999
Q ss_pred eeecceeeecCCCCccEEEeCCCCcCCCC
Q 017312 330 SVWNPAFDVTPANLITGIITEKGVVTKAG 358 (373)
Q Consensus 330 ~v~np~fDvtP~~lIt~iITE~Gi~~p~~ 358 (373)
.||||+||+||++|||+||||+|+++|..
T Consensus 316 ~vwnPAFDvTPa~LItgIiTe~g~f~~~~ 344 (354)
T KOG1468|consen 316 NVWNPAFDVTPAELITGIITEKGVFTPEE 344 (354)
T ss_pred CccCccccCCHHHHHHHHhhhccccChHH
Confidence 99999999999999999999999999974
No 8
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=1.6e-93 Score=694.25 Aligned_cols=316 Identities=42% Similarity=0.626 Sum_probs=296.5
Q ss_pred CCCCCeeeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhhHhcCcHHHHHHHHHHHHHHHhhcccCCCCHHHHH
Q 017312 8 TDNNSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAA 87 (373)
Q Consensus 8 ~~~~~~~~i~~~~~~l~ildq~~lP~~~~~~~~~~~~~~~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~ 87 (373)
.+.+++++|+|++++|+|||||+||++++|+.|++++|++++|++|+|||||+||++|||||++++++.
T Consensus 7 ~~~~~~~~~~~~~~~l~~lDq~~lP~~~~~~~~~~~~~~~~aI~~m~vRGAp~ig~~aa~g~~l~~~~~----------- 75 (329)
T PRK06371 7 GETKTLKAVWYEDGEVKLIDQRKLPDKIEIFEAKNSDDVAYAIKNMVVRGAPAIGVTAAYGLAMASKNG----------- 75 (329)
T ss_pred CceeeEEEEEEeCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCeecChHHHHHHHHHHHHHHHHhH-----------
Confidence 456779999999999999999999999999999999999999999999999999999999999987642
Q ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcC
Q 017312 88 SFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKN 167 (373)
Q Consensus 88 ~~l~~~~~~L~~~RPtav~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~g~~~i~~~~~~ 167 (373)
+.+.++.++|.++|||++||+|++++|+... .+ .+.++++.+|+++++++|+++|+++|.
T Consensus 76 ~~~~~~~~~L~~~RPtavnL~~a~~~~~~~~-------~~--------~~~a~~~~~e~~~~~~~I~~~g~~~I~----- 135 (329)
T PRK06371 76 ENMDEAVEKIRSTRPTAYDLFKAIRYMNSNE-------FD--------MNAARRYAMEIIGRSKKIGEYGNELIK----- 135 (329)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHHHHhhc-------Cc--------HHHHHHHHHHHHHHHHHHHHHHHHHcC-----
Confidence 4478889999999999999999999987532 12 566777888999999999999999999
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCC
Q 017312 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGR 247 (373)
Q Consensus 168 ~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~ 247 (373)
+|++||||||||+++|+|||||+++|+.|+++|++|+|||+||||++||.|||+|+|.+.|||||+|+|||++|+|++++
T Consensus 136 ~g~~ILThcnsg~la~~~~gTal~~l~~A~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~ 215 (329)
T PRK06371 136 NGARILTHCNAGALAVVDWGTALAPIRIAHRNGKNIFVFVDETRPRLQGARLTAWELAQEGIDHAIIADNAAGYFMRKKE 215 (329)
T ss_pred CCCEEEEeCCCCcceeccchhHHHHHHHHHHcCCeeEEEECCCCCcchHHHHHHHHHHHCCCCEEEEcccHHHHHhhhcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998788
Q ss_pred CCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCC
Q 017312 248 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAAS 327 (373)
Q Consensus 248 vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~ 327 (373)
||+||+|||+|++||+++||+|||++|++||+||||||||||++|||+....|+++++|+|+|+|+..+. |....|+
T Consensus 216 Vd~VivGAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPfyV~a~~~t~d~~~~~g~~i~iEer~~~ev~~~~---g~~~~p~ 292 (329)
T PRK06371 216 IDLVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPFYVAAPGSTFDFSIKSGDEIPIEERDENEVLEIN---GCRIGPQ 292 (329)
T ss_pred CCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEeccccccCCCCCCcCccccccCCHHHeeccC---CeecCCC
Confidence 9999999999999999999999999999999999999999999999998888999999999999999875 5566788
Q ss_pred CceeecceeeecCCCCccEEEeCCCCcCCC
Q 017312 328 GISVWNPAFDVTPANLITGIITEKGVVTKA 357 (373)
Q Consensus 328 ~~~v~np~fDvtP~~lIt~iITE~Gi~~p~ 357 (373)
+++++||+||+|||+|||+||||+|+++|+
T Consensus 293 ~~~v~Np~FDvTP~elIt~iITE~Gv~~p~ 322 (329)
T PRK06371 293 ESHARNPAFDVTPNEYVTGFITEYGIFKPN 322 (329)
T ss_pred CccccCcCccCCCHHHCCEEEccCCccChH
Confidence 999999999999999999999999999987
No 9
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=100.00 E-value=8e-84 Score=625.09 Aligned_cols=303 Identities=47% Similarity=0.693 Sum_probs=286.9
Q ss_pred ecChHHHHHHHHhhHhcCcHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHH
Q 017312 40 IRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIIS 119 (373)
Q Consensus 40 ~~~~~~~~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPtav~l~nai~~~~~~i~ 119 (373)
|++++|++++||+|+|||||+||++|+++|+++++.. .+.+.+++.+.|+.++++|.++|||+++|+|+++++++.++
T Consensus 1 ~~~~~~~~~~I~~m~vrGa~~ia~aa~~~l~~~~~~~--~~~~~~e~~~~l~~~~~~L~~~RPt~v~l~na~~~~~~~i~ 78 (303)
T TIGR00524 1 CRTYEDVADAIKSMVVRGAPAIGVAAAYGLALAARKI--ETDNVEEFKEDLEKAADFLLSTRPTAVNLFWALERVLNSAE 78 (303)
T ss_pred CCCHHHHHHHHHhCeecChHHHHHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHh
Confidence 6789999999999999999999999999999998865 34578999999999999999999999999999999998885
Q ss_pred HHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC
Q 017312 120 KAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE 199 (373)
Q Consensus 120 ~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~ 199 (373)
+ ..+.++.++.+++.+++|++++.+++++|+++|+++|. +|++||||||||+|||+||+||+++|+.|+++
T Consensus 79 ~----~~~~~~~k~~l~~~~~~~~~e~~~~~~~Ia~~a~~~I~-----~g~~ILT~~~Sg~lat~~~~tv~~~l~~A~~~ 149 (303)
T TIGR00524 79 N----GESVEEAKESLLREAIEIIEEDLETNRKIGENGAKLIK-----DGDTVLTHCNAGALATSDYGTALGVIRSAWED 149 (303)
T ss_pred c----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CCCEEEEecCCccccccCcchHHHHHHHHHHc
Confidence 3 24788999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHh
Q 017312 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF 279 (373)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~ 279 (373)
|++|+|||+||||++||.++++|+|.+.|||||+|+|++++|+|++++||+||+|||+|++||+++||+|||++|++||+
T Consensus 150 g~~~~V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~Dsa~~~~m~~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak~ 229 (303)
T TIGR00524 150 GKRIRVIACETRPRNQGSRLTAWELMQDGIDVTLITDSMAAYFMQKGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKE 229 (303)
T ss_pred CCceEEEECCCCCccchHHHHHHHHHHCCCCEEEEChhHHHHHccccCCCEEEEcccEEecCCCEeEhhhHHHHHHHHHH
Confidence 99999999999999999899999999999999999999999999555999999999999999999999999999999999
Q ss_pred CCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcCC
Q 017312 280 HNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 356 (373)
Q Consensus 280 ~~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~p 356 (373)
|+|||||+||+|||++.++.|+++++|+|+|+|+.... |....+++++++||+||+|||+|||+||||.|+++|
T Consensus 230 ~~vPv~V~a~s~K~~~~~~~g~~i~~e~~~~~ev~~~~---~~~~~~~~~~v~np~fD~TP~~lIt~iiTe~Gv~~p 303 (303)
T TIGR00524 230 FRIPFFVAAPLSTFDTKTSCGEDIVIEERDPEEVAQVG---GVRIAPLGVKVYNPAFDITPHDLIDAIITEKGIITP 303 (303)
T ss_pred hCCCEEEecccccccCCCCCccccccccCCHHHhcccc---CcccCCCCceeecccccCCCHHHCCEEEcCCCccCc
Confidence 99999999999999999999999999999999998765 444567899999999999999999999999999987
No 10
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=100.00 E-value=1.1e-77 Score=582.63 Aligned_cols=299 Identities=36% Similarity=0.462 Sum_probs=277.7
Q ss_pred ChHHHHHHHHhhHhcCcHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHH
Q 017312 42 DSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKA 121 (373)
Q Consensus 42 ~~~~~~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPtav~l~nai~~~~~~i~~~ 121 (373)
+++|++++||+|+|||||+||++|+++|++++.+. ++.+..++.+.|+.++++|.++|||+++|+|+++++++.++.
T Consensus 1 ~~~~~~~~ik~~~vrGa~~ia~~aa~~l~~~~~~~--~~~~~~~~~~~l~~~~~~L~~arPt~v~l~nai~~~~~~i~~- 77 (301)
T TIGR00511 1 DVEETAEKIRSMEIRGAGRIARAAAAALMEQAAKA--ESASPEEFRAEMREAANILISTRPTAVSLPNAVRYVLKYMSG- 77 (301)
T ss_pred CHHHHHHHHHhCcccCcHHHHHHHHHHHHHHHHhc--ccCCHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHhcc-
Confidence 47899999999999999999999999999999875 356789999999999999999999999999999999988843
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC
Q 017312 122 AATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV 201 (373)
Q Consensus 122 ~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~ 201 (373)
.+.+++++.+++.+++|++++.+++++|+++|+++|. +|++||||||| +||+++|+.|+++|+
T Consensus 78 ----~~~~~~k~~l~~~~~~~~~e~~~a~~~I~~~a~~~i~-----~g~~ILT~~~S--------~tv~~~l~~a~~~~~ 140 (301)
T TIGR00511 78 ----EDVETLRETVIERADAFINQSDKAQERIGEIGAKRIR-----DGDVVMTHCNS--------EAALSVIKTAFEQGK 140 (301)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCEEEEECCc--------HHHHHHHHHHHHcCC
Confidence 4788999999999999999999999999999999999 89999999998 799999999999999
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCC
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN 281 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~ 281 (373)
+|+|||+||||.+|| ++++++|.+.|||||+|+|++++++| ++||+|++|||+|++||+++||+|||++|++||+|+
T Consensus 141 ~f~V~v~EsrP~~~G-~~~a~~L~~~gI~vtlI~Dsa~~~~m--~~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~ 217 (301)
T TIGR00511 141 DIEVIATETRPRKQG-HITAKELRDYGIPVTLIVDSAVRYFM--KEVDHVVVGADAITANGALINKIGTSQLALAAREAR 217 (301)
T ss_pred cEEEEEecCCCcchH-HHHHHHHHHCCCCEEEEehhHHHHHH--HhCCEEEECccEEecCCCEEEHHhHHHHHHHHHHhC
Confidence 999999999999999 78899999999999999999999999 889999999999999999999999999999999999
Q ss_pred CeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcCCCCCCc
Q 017312 282 ILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGADD 361 (373)
Q Consensus 282 vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~p~~~~~ 361 (373)
|||||+||+|||++.++.|+.+++|+|||+|+...++ . ..+++++++||+||+|||+|||+||||+|+++|+. .
T Consensus 218 vPv~V~a~~~K~~~~~~~~~~~~ie~~~~~ev~~~~~---~-~~~~~~~v~np~fD~tP~~lIt~iITe~Gi~~p~~-i- 291 (301)
T TIGR00511 218 VPFMVAAETYKFHPKTITGELVEIEERDPTEVLDEED---L-KQLGAVKVRNPAFDVTPAEYIDAIITEVGQIPPEM-A- 291 (301)
T ss_pred CCEEEEcccceecCCCCCCCcccccccCHHHhccccC---c-cCCCCccccCcceecCCHHHCCEEEeCCCcCCcHH-H-
Confidence 9999999999999999999999999999999987652 1 34678999999999999999999999999998862 3
Q ss_pred cccHHHHH
Q 017312 362 AFDIKDFI 369 (373)
Q Consensus 362 ~~~~~~~~ 369 (373)
+..+++++
T Consensus 292 ~~~l~~~~ 299 (301)
T TIGR00511 292 YTIIKELL 299 (301)
T ss_pred HHHHHHHc
Confidence 24566554
No 11
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=1.4e-76 Score=577.16 Aligned_cols=301 Identities=35% Similarity=0.450 Sum_probs=278.5
Q ss_pred ecChHHHHHHHHhhHhcCcHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHH
Q 017312 40 IRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIIS 119 (373)
Q Consensus 40 ~~~~~~~~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPtav~l~nai~~~~~~i~ 119 (373)
.+++++++.+|++|+|||||+||++++++|+++++++ .+.+..++++.|+.++++|.++|||++||+|+++++++...
T Consensus 4 ~~~v~~~~~~i~~~~v~Ga~~i~~~a~~~l~~~~~~~--~~~~~~~l~~~l~~~~~~L~~arPt~v~l~nair~v~~~~~ 81 (310)
T PRK08535 4 MPEVLETAEKIKTMEIRGAGRIARAAAEALKDQAEKS--DAESPEEFKAEMRAAANILISTRPTAVSLPNAVRYVMRYYS 81 (310)
T ss_pred chhHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHhhc
Confidence 5689999999999999999999999999999999886 45678899999999999999999999999999999987632
Q ss_pred HHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC
Q 017312 120 KAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE 199 (373)
Q Consensus 120 ~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~ 199 (373)
..+.+++++.+++.+++|++++.+++++|+++|+++|. +|++||||||| +||+++|+.|+++
T Consensus 82 -----~~~~~~~k~~l~e~~~~~~~e~~~~~~~I~~~a~~~i~-----~g~~ILT~~~S--------~tv~~~l~~A~~~ 143 (310)
T PRK08535 82 -----GETVEEARESVIERAEEFIESSENAVEKIGEIGAKRIR-----DGDVIMTHCNS--------SAALSVIKTAHEQ 143 (310)
T ss_pred -----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCEEEEeCCc--------HHHHHHHHHHHHC
Confidence 34789999999999999999999999999999999999 89999999998 7999999999999
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHh
Q 017312 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF 279 (373)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~ 279 (373)
|++|+|||+||||.+|| ++++++|.+.|||||+|+|++++++| ++||+||+|||+|++||+++||+|||++|++||+
T Consensus 144 ~k~~~V~v~EsrP~~~G-~~~a~~L~~~GI~vtlI~Dsav~~~m--~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~ 220 (310)
T PRK08535 144 GKDIEVIATETRPRNQG-HITAKELAEYGIPVTLIVDSAVRYFM--KDVDKVVVGADAITANGAVINKIGTSQIALAAHE 220 (310)
T ss_pred CCeEEEEEecCCchhhH-HHHHHHHHHCCCCEEEEehhHHHHHH--HhCCEEEECccEEecCCCEEeHHhHHHHHHHHHH
Confidence 99999999999999999 78899999999999999999999999 8899999999999999999999999999999999
Q ss_pred CCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcCCCCC
Q 017312 280 HNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGA 359 (373)
Q Consensus 280 ~~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~p~~~ 359 (373)
|+|||||+||+|||++.++.|+++++|+|+|+|+...+ ....+++++++||+||+|||+|||+||||.|+++|+.
T Consensus 221 ~~vPv~V~a~~~K~~~~~~~~~~~~ie~~~~~ev~~~~----~~~~~~~v~v~np~fD~tP~~lIt~iiTe~Gi~~ps~- 295 (310)
T PRK08535 221 ARVPFMVAAETYKFSPKTLLGELVEIEERDPTEVLPEE----ILAKLPGVKVRNPAFDVTPPEYIDAIITEIGAIPPEM- 295 (310)
T ss_pred hCCCEEEecccceecCCCCCCCcceecccCHHHhcccc----cccCCCCceeeccCcccCCHHHCCEEEeCCCcCChHH-
Confidence 99999999999999999999999999999999998653 2245678999999999999999999999999998863
Q ss_pred CccccHHHHH
Q 017312 360 DDAFDIKDFI 369 (373)
Q Consensus 360 ~~~~~~~~~~ 369 (373)
. +..+++++
T Consensus 296 v-~~~~~~~~ 304 (310)
T PRK08535 296 A-YTIIKEYL 304 (310)
T ss_pred H-HHHHHHHh
Confidence 3 24555544
No 12
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=100.00 E-value=6.5e-76 Score=559.99 Aligned_cols=269 Identities=26% Similarity=0.329 Sum_probs=250.5
Q ss_pred cChHHHHHHHHhhHhcCcHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH
Q 017312 41 RDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISK 120 (373)
Q Consensus 41 ~~~~~~~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPtav~l~nai~~~~~~i~~ 120 (373)
+++.++++.|++|+|||||+||++||++++++++.. +..++.+.|.+..++|.++||||+||.|++++|.
T Consensus 4 ~~~~~~~~~i~~m~vrGAp~i~~~aa~~l~~~a~~~-----~~~~~~~~l~~~~~~L~~aRPTavnL~~a~~~~~----- 73 (275)
T PRK08335 4 PEVREILEEMKAERIRGASWLAKKGAEAYLLLAEEL-----DGEELENALKELREEIPEVNPTMASLYNLARFIP----- 73 (275)
T ss_pred hHHHHHHHHHhhceecCHHHHHHHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHHHHcCCcHHhHHHHHHHhc-----
Confidence 467899999999999999999999999999888753 2367889999999999999999999999999872
Q ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCC
Q 017312 121 AAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEG 200 (373)
Q Consensus 121 ~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g 200 (373)
.++.++.+.+.+++|++++.+++++|+++|+++|. +|++||||||| +||+++|+.|+++|
T Consensus 74 -------~~~~~~~~~~~a~~~~~~~~~~~~~I~~~a~~~I~-----~g~~ILTh~~S--------~tv~~~l~~A~~~g 133 (275)
T PRK08335 74 -------ITNNPELVKSRAEEFLRLMEEAKREIGNIGSELID-----DGDVIITHSFS--------SAVLEILKTAKRKG 133 (275)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCEEEEECCc--------HHHHHHHHHHHHcC
Confidence 23466778999999999999999999999999999 89999999998 69999999999999
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhC
Q 017312 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFH 280 (373)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~ 280 (373)
++|+|||+||||++||.+| +|+|.+.|||||+|+||+++++| ++||+||+|||+|++||+++||+|||++|++||+|
T Consensus 134 k~~~V~v~EsrP~~qG~~l-a~eL~~~GI~vtlI~Dsa~~~~m--~~vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~~ 210 (275)
T PRK08335 134 KRFKVILTESAPDYEGLAL-ANELEFLGIEFEVITDAQLGLFA--KEATLALVGADNVTRDGYVVNKAGTYLLALACHDN 210 (275)
T ss_pred CceEEEEecCCCchhHHHH-HHHHHHCCCCEEEEeccHHHHHH--HhCCEEEECccEEecCCCEeehhhHHHHHHHHHHc
Confidence 9999999999999999998 99999999999999999999999 88999999999999999999999999999999999
Q ss_pred CCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcCCC
Q 017312 281 NILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKA 357 (373)
Q Consensus 281 ~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~p~ 357 (373)
||||||+||+|||++.++.+ ++++|+|++ .+++++++||+||+|||+|||+||||+|+++|+
T Consensus 211 ~vPfyV~a~~~k~~~~~~~~-~i~ieer~~--------------~~~~~~v~Np~FDvTP~~lIt~iITE~Gv~~p~ 272 (275)
T PRK08335 211 GVPFYVAAETFKFHPELKSE-EVELVERPY--------------ARQGHRVRNVLFDVTPWKYVRGIITELGILVPP 272 (275)
T ss_pred CCCEEEECccceecccCCCC-CccccccCC--------------CCCCceecCcCccCCCHHHCCEEEccCCccCCC
Confidence 99999999999999998888 789998864 246789999999999999999999999999875
No 13
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-67 Score=500.55 Aligned_cols=295 Identities=31% Similarity=0.389 Sum_probs=270.6
Q ss_pred cChHHHHHHHHhhHhcCcHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH
Q 017312 41 RDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISK 120 (373)
Q Consensus 41 ~~~~~~~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPtav~l~nai~~~~~~i~~ 120 (373)
..+.+..+-|++|+++||.++|++++.+|...++++ .+.+.++|.+.++...+.|.++||++++|+|++|++++..
T Consensus 4 ~~v~~~~~~lk~~~i~Ga~~ia~~a~eal~~~~~~~--~~~~~~~l~~~i~~~~~~L~~~~P~~~Sl~n~~r~v~~~~-- 79 (301)
T COG1184 4 PEVDETAEKLKSMEIRGASWIAIAAAEALEILASDS--QAPTVEELIDAIRELSETLVKARPTAVSLGNLIRFVLRDS-- 79 (301)
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhcc--ccccHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHhcc--
Confidence 456788999999999999999999999999888776 4667999999999999999999999999999999998711
Q ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCC
Q 017312 121 AAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEG 200 (373)
Q Consensus 121 ~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g 200 (373)
...+.++.++.+++.+++|+++...+.+.|++.|+++|. ||++||||||| ++|+.+|+.|++.|
T Consensus 80 ---~~~~~~~~~~~~~~~~~~~i~~~~~a~~~ia~~~a~~i~-----dg~~IlTh~~S--------~~v~~~l~~A~~~~ 143 (301)
T COG1184 80 ---SGGDKENRRQSLIKAAQEFIDRVEKAKERIAEIGAERIH-----DGDVILTHSFS--------KTVLEVLKTAADRG 143 (301)
T ss_pred ---cccchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc-----CCCEEEEecCc--------HHHHHHHHHhhhcC
Confidence 345788899999999999999999999999999999999 99999999998 79999999999999
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhC
Q 017312 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFH 280 (373)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~ 280 (373)
++|+|||+||||.+||. .++++|++.|||+++|+||+++++| .+||+|+||||+|++||.++||+||+++|++||++
T Consensus 144 k~~~V~VtESRP~~eG~-~~ak~L~~~gI~~~~I~Dsa~~~~~--~~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~ 220 (301)
T COG1184 144 KRFKVIVTESRPRGEGR-IMAKELRQSGIPVTVIVDSAVGAFM--SRVDKVLVGADAILANGALVNKIGTSPLALAAREL 220 (301)
T ss_pred CceEEEEEcCCCcchHH-HHHHHHHHcCCceEEEechHHHHHH--HhCCEEEECccceecCCcEEeccchHHHHHHHHHh
Confidence 99999999999999995 6799999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcCCCCCC
Q 017312 281 NILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGAD 360 (373)
Q Consensus 281 ~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~p~~~~ 360 (373)
++||||||++|||.+.++.+....+|++|+.|+.... ...+++++||+||+|||+|||+||||.|+++|+ +.
T Consensus 221 ~~Pf~v~aesyKf~p~~~~~~~~~~~~~~~~e~~~~~-------~~~~~~v~Np~fD~TP~~~Id~iITe~G~~pp~-~~ 292 (301)
T COG1184 221 RVPFYVVAESYKFVPKTLLDTLVEIELRDPLEVAREE-------PLGNLKVRNPAFDVTPPEYIDAIITELGIIPPS-SI 292 (301)
T ss_pred CCCEEEEeeeecccccccCCCcceeeccChhhccccC-------cccCccccccccCCCcHHHhheeeecCCCCCch-hH
Confidence 9999999999999999999999999999999987432 122689999999999999999999999998887 34
Q ss_pred ccccHHH
Q 017312 361 DAFDIKD 367 (373)
Q Consensus 361 ~~~~~~~ 367 (373)
+.-+++
T Consensus 293 -~~i~~e 298 (301)
T COG1184 293 -YRILRE 298 (301)
T ss_pred -HHHHHH
Confidence 244444
No 14
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=100.00 E-value=3.5e-66 Score=498.17 Aligned_cols=281 Identities=33% Similarity=0.448 Sum_probs=245.7
Q ss_pred HhcCcHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHH
Q 017312 54 VVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQ 133 (373)
Q Consensus 54 ~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPtav~l~nai~~~~~~i~~~~~~~~~~~e~~~ 133 (373)
+|||++++|++++.+|...++++ ++.+..+|++.|+.++++|.++||++++|+|+++++++.+.+.. ...+.++.++
T Consensus 1 qi~Gs~~~ai~al~~L~~~i~~~--~~~~~~el~~~L~~~~~~L~~arP~~~~l~n~v~~~~~~i~~~~-~~~~~~~~~~ 77 (282)
T PF01008_consen 1 QIRGSPAIAIAALEALRQVISDS--KATTVQELIEELRKAAKRLIKARPTSVSLGNAVRRILREIRKLD-ESEDFEEAKQ 77 (282)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHC--HCSSHHHHHHHHHHHHHHHHTSSTS-HHHHHHHHHHHHHHHHHH-TTSSHHHHHH
T ss_pred CccChHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhhhhh-cccchHHHHH
Confidence 58999999999999999999987 46789999999999999999999999999999999999776553 4567899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCC
Q 017312 134 AYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPF 213 (373)
Q Consensus 134 ~l~~~~~~~~~e~~~a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~ 213 (373)
.+++.+++|+++...+.++|++++.++|. ++++|||||+| ++|+.+|+.|+++|++|+|||+||||.
T Consensus 78 ~l~~~i~~~~~e~~~~~~~I~~~~~~~I~-----~~~~ILT~~~S--------~~v~~~l~~a~~~~~~~~V~v~es~P~ 144 (282)
T PF01008_consen 78 SLLEAIDEFLDEIEQAREKIADHASELIN-----DGDTILTHGYS--------STVERFLLSAKKKGKKFRVIVLESRPY 144 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC------TTEEEEEES----------SHHHHHHHHHHHTTEEEEEEEE--TTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcc-----CCeEEEEeCCc--------hHHHHHHHHHHHcCCeEEEEEccCCcc
Confidence 99999999999999999999999999999 89999999998 689999999999999999999999999
Q ss_pred CcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCC-CCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCcc
Q 017312 214 NQGSRLTAFELVHDRIPATLIADSAAAALMKDGR-VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTS 292 (373)
Q Consensus 214 ~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~-vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k 292 (373)
+|| +.+|++|.+.||+|++|+|++++++| ++ ||+|++|||+|++||+++||+||+++|++||+|+|||||+||+||
T Consensus 145 ~eG-~~~a~~L~~~gi~v~~i~d~~~~~~m--~~~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~~K 221 (282)
T PF01008_consen 145 NEG-RLMAKELAEAGIPVTLIPDSAVGYVM--PRDVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAESYK 221 (282)
T ss_dssp THH-HTHHHHHHHTT-EEEEE-GGGHHHHH--HCTESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--GGG
T ss_pred hhh-hhHHHHhhhcceeEEEEechHHHHHH--HHhCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEccccc
Confidence 999 56799999999999999999999999 66 999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcCC
Q 017312 293 IDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 356 (373)
Q Consensus 293 ~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~p 356 (373)
|++.++.+....+|.++|.|+...+ +....+++++++||.||+|||+|||+||||.|+++|
T Consensus 222 ~~~~~~~~~~~~~e~~~~~~v~~~~---~~~~~~~~v~~~~p~~D~tP~~~It~~iTe~G~~~P 282 (282)
T PF01008_consen 222 FSPRYPLDQDSFNELRDPQEVLPFD---GSSIVPENVDVINPLFDYTPPDLITLIITELGILPP 282 (282)
T ss_dssp BETTCSSGGGSSS-B--THHHHEET---TEEESTTTEEEE-BSEEEEEGGG-SEEEETTEEE-C
T ss_pred ccccccccchhhhhccccceeeccC---CcccccceeeccCccEeecCHHHCCEEEcCCCCCCc
Confidence 9999999998999999999999887 344456799999999999999999999999999998
No 15
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-56 Score=438.20 Aligned_cols=298 Identities=20% Similarity=0.248 Sum_probs=268.9
Q ss_pred HHHHHHh-------hHhcCcHHHHHHHHHHHHHHHhhcccC--CCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 017312 46 GWSAIRE-------MVVRGAPAIAMAAALSLAVEVFNLNAF--SGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKE 116 (373)
Q Consensus 46 ~~~aI~~-------m~vrGA~ai~~~aa~~l~~~~~~~~~~--~~~~~el~~~l~~~~~~L~~~RPtav~l~nai~~~~~ 116 (373)
++.+|-. ..|-|.+++||+...++..++++|.++ .+-.++|...|+.++++|.+|||.+++|+||||++++
T Consensus 233 IHPAv~~Lglq~a~~kI~GsnaRCIa~L~afqevi~Dy~TP~~ktlsrdLt~~i~~qv~~L~~cRPLs~SmgNAiRflK~ 312 (556)
T KOG1467|consen 233 IHPAVLRLGLQYALGKISGSNARCIAMLQAFQEVIKDYTTPPEKTLSRDLTAAISPQVSFLTQCRPLSISMGNAIRFLKN 312 (556)
T ss_pred ccHHHHHHHHHHhhcccCCccHHHHHHHHHHHHHHHhccCCCccccchhhHhhhhhHHHHHhhcCCccchhhHHHHHHHH
Confidence 6666654 479999999999999999999998433 3346899999999999999999999999999999999
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHH
Q 017312 117 IISKAAATASEANSVFQAYIEAAEIMLKDD-VATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRA 195 (373)
Q Consensus 117 ~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~-~~a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~ 195 (373)
.|..+. ...+..|.++.|.+.+++|+++. +.+.+.|.+++.+.|. ||++||||+.| +++..+|.+
T Consensus 313 eI~~L~-~s~~e~eaKe~L~~~I~~~i~eki~~A~qaI~q~a~~KI~-----dgdviltyg~s--------~vV~~ill~ 378 (556)
T KOG1467|consen 313 EISKLP-ISLSESEAKEELQSDIDRFIAEKIILADQAISQHAVTKIQ-----DGDVLLTYGSS--------SVVNMILLE 378 (556)
T ss_pred HHhhCC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCEEEEecch--------HHHHHHHHH
Confidence 999874 34566789999999999999875 5799999999999999 99999999765 567789999
Q ss_pred HHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHH
Q 017312 196 LHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLAL 275 (373)
Q Consensus 196 a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~ 275 (373)
|++.|++|+|+|++|||.+||.++ .+.|.+.||+|||+..++++|+| ..+++||+||++|++||.++.++||.++||
T Consensus 379 A~~~~k~frVvVVDSRP~~EG~~~-lr~Lv~~GinctYv~I~a~syim--~evtkvfLGahailsNG~vysR~GTa~val 455 (556)
T KOG1467|consen 379 AKELGKKFRVVVVDSRPNLEGRKL-LRRLVDRGINCTYVLINAASYIM--LEVTKVFLGAHAILSNGAVYSRVGTACVAL 455 (556)
T ss_pred HHHhCcceEEEEEeCCCCcchHHH-HHHHHHcCCCeEEEEehhHHHHH--HhcceeeechhhhhcCcchhhhcchHHHHH
Confidence 999999999999999999999876 77899999999999999999999 999999999999999999999999999999
Q ss_pred HHHhCCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCC-----CccccCCCceeecceeeecCCCCccEEEeC
Q 017312 276 CAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGL-----GEQVAASGISVWNPAFDVTPANLITGIITE 350 (373)
Q Consensus 276 ~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~-----g~~~~~~~~~v~np~fDvtP~~lIt~iITE 350 (373)
+|++|||||+||||+|||+.+.+.+.-..+|..||+.+....|.+ ..|....++.+.|..||+|||+||+++|||
T Consensus 456 vAna~nVPVlVCCE~yKF~eRvQlDsi~~NEL~dpn~l~~v~g~~~~~~L~~wqn~~~L~~lnl~YD~TPpelIs~vVTe 535 (556)
T KOG1467|consen 456 VANAFNVPVLVCCEAYKFHERVQLDSIVSNELGDPNALQEVRGREDKVALAGWQNNANLKFLNLMYDVTPPELISAVVTE 535 (556)
T ss_pred HhcccCCCEEEEechhhhhhhhhhhhhhhcccCChhhhhhccCcchhhhhhccccccccchhheeeccCcHHHHHHHHhh
Confidence 999999999999999999999999888889999999887666411 235667899999999999999999999999
Q ss_pred CCCcCCCCCCc
Q 017312 351 KGVVTKAGADD 361 (373)
Q Consensus 351 ~Gi~~p~~~~~ 361 (373)
+|++||+ +.+
T Consensus 536 ~g~lp~T-SVP 545 (556)
T KOG1467|consen 536 LGMLPPT-SVP 545 (556)
T ss_pred ccccCCc-cch
Confidence 9999998 564
No 16
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-55 Score=404.12 Aligned_cols=273 Identities=25% Similarity=0.328 Sum_probs=241.8
Q ss_pred HHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHh-hccCCHHHHHHHHHHHH
Q 017312 61 IAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAA-ATASEANSVFQAYIEAA 139 (373)
Q Consensus 61 i~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPtav~l~nai~~~~~~i~~~~-~~~~~~~e~~~~l~~~~ 139 (373)
-++||..+|+..++.. ..+|..||...|+++.+.|+++-++.++|..+++.+.+++.... ....++++.++.+++.+
T Consensus 29 ~~vAAIraL~~vL~~s--~a~Ti~el~~~l~~a~~tL~~~d~ss~Sl~agcdlF~Rfvtr~slld~~Df~~ck~~l~erg 106 (313)
T KOG1466|consen 29 MAVAAIRALLEVLRRS--QATTIAELENELKSASATLKKTDTSSISLRAGCDLFMRFVTRASLLDYEDFEQCKQHLLERG 106 (313)
T ss_pred hHHHHHHHHHHHHhhc--ccchHHHHHHHHHHHHHHHHccCccchhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 3466777777777765 56889999999999999999999999999999999999997763 35678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHH
Q 017312 140 EIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRL 219 (373)
Q Consensus 140 ~~~~~e~~~a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rl 219 (373)
+.|+++...++.+|++.+.+||. ||++||||++| ..|+.+|..|++++++|+|||+||||..+|..
T Consensus 107 ~~F~~~~~~sR~~IA~l~~~Fi~-----dg~~ILtHg~S--------RvVl~~L~~Aa~~~~~F~V~vTEsrPd~sG~l- 172 (313)
T KOG1466|consen 107 ELFIERARKSRQKIAMLAQDFIT-----DGCTILTHGYS--------RVVLEVLLTAAQNKKRFRVYVTESRPDGSGKL- 172 (313)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhh-----CCCEEEEcchh--------HHHHHHHHHHHhcCceEEEEEecCCCCCchhH-
Confidence 99999999999999999999999 99999999765 45789999999999999999999999999975
Q ss_pred HHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCccccCCCCC
Q 017312 220 TAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSS 299 (373)
Q Consensus 220 ta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~~~~~~ 299 (373)
++++|.+.|||||++.||++||.| .+||+|+||||.|..||+++|++|||++|++||+.++||||+||++||.+.+|.
T Consensus 173 m~~~L~~~~IPvtlvlDSaVgyvM--e~vD~VlVGAEGVvEsGGIIN~iGTyq~~v~Ak~~~kPfYV~AES~KFvRlfPL 250 (313)
T KOG1466|consen 173 MAKELKKLGIPVTLVLDSAVGYVM--ERVDLVLVGAEGVVESGGIINKIGTYQVAVCAKSMNKPFYVVAESHKFVRLFPL 250 (313)
T ss_pred HHHHHHhcCCCeEEEehhhHHHHH--hhccEEEEccceeeecCceeeecccchhhhhHHhcCCCeEEEeeccceeeeccC
Confidence 588999999999999999999999 999999999999999999999999999999999999999999999999998885
Q ss_pred C-CccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcCCCC
Q 017312 300 G-QEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAG 358 (373)
Q Consensus 300 ~-~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~p~~ 358 (373)
. .++|.+.+ |-++.... ...+++...+|..|||||+|||++|||+|+++|++
T Consensus 251 nQ~Dlp~~~~-p~~f~~~~------~~~~~~~~e~p~vDYTpPeyiTlL~TDLGvltPSa 303 (313)
T KOG1466|consen 251 NQKDLPPALP-PFKFSRPV------PEREDVEREHPTVDYTPPEYLTLLFTDLGVLTPSA 303 (313)
T ss_pred cccccccccC-CcccCCCC------CcHHhhhhcCCCcccChHHHHHHHHhhccccChhh
Confidence 4 45665433 33332110 12247888999999999999999999999999985
No 17
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-52 Score=390.67 Aligned_cols=294 Identities=26% Similarity=0.322 Sum_probs=269.3
Q ss_pred ChHHHHHHHHhhHhcCcHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHH
Q 017312 42 DSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKA 121 (373)
Q Consensus 42 ~~~~~~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPtav~l~nai~~~~~~i~~~ 121 (373)
.+.+.+.++|...+||+.+||+..+.-|...+.+- .|.+..+|++.++..++.|..+.|+..+.+|.+||+++.+++.
T Consensus 10 ~i~~fI~~lk~r~v~gS~aiA~eTl~llr~iIs~~--rw~~~n~Li~~vr~~g~~L~~A~psE~~~gNiirrIlkliReE 87 (353)
T KOG1465|consen 10 EISEFIAALKKRLVRGSYAIAIETLNLLRQIISRE--RWSTANDLIESVRDVGKKLHAAQPSELSCGNIIRRILKLIREE 87 (353)
T ss_pred HHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHhhhcCCchhhhhHHHHHHHHHHHHH
Confidence 56788999999999999999998887777776653 6889999999999999999999999999999999999999877
Q ss_pred hhc-------c--------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCC
Q 017312 122 AAT-------A--------------------------SEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNS 168 (373)
Q Consensus 122 ~~~-------~--------------------------~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~g~~~i~~~~~~~ 168 (373)
... + .+..++++.+++.++++++|....++.|+..+.++|+ +
T Consensus 88 ~~~l~~~~~s~~s~~~~Sl~kLl~~~~e~~~~~~~S~~~~~~lr~~~i~~I~eli~Eie~~~E~Ia~Qa~ehih-----s 162 (353)
T KOG1465|consen 88 VLELTGGATSDESSPSESLHKLLQSTEESHTNKKLSSADAKKLRKDLIEGIKELITEIEGSRENIAVQAIEHIH-----S 162 (353)
T ss_pred HHHHhccCCCCCCchHHHHHHHHhCCCccccccccccccHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhc-----c
Confidence 421 0 1234689999999999999999999999999999999 8
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCC
Q 017312 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRV 248 (373)
Q Consensus 169 ~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~v 248 (373)
+++|||++.| .||+.+|+.|.++|++|+|+|.|..|.+||. .+|+.|.++||++|+|+|++++..| ++|
T Consensus 163 nEviLT~g~S--------rTV~~FL~~A~kk~Rkf~viVaE~~p~~qgH-~~Ak~la~~giettVI~daaVfA~M--srV 231 (353)
T KOG1465|consen 163 NEVILTLGSS--------RTVENFLKHAAKKGRKFRVIVAEGAPNNQGH-ELAKPLAQAGIETTVIPDAAVFAMM--SRV 231 (353)
T ss_pred CceEEecCcc--------HHHHHHHHHHHhccCceEEEEeecCCcccch-HhhHHHHHcCCeeEEeccHHHHHHh--hhc
Confidence 9999999854 7999999999999999999999999999995 5588999999999999999999999 999
Q ss_pred CEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCC
Q 017312 249 SAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASG 328 (373)
Q Consensus 249 d~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~ 328 (373)
+|||+|+++|++||++....|++++|++||+|.+|||||||.||++|.+|.+.+..++.|+|++++++.. | .....
T Consensus 232 nKVIigt~avl~NGgl~~~~G~~~vAlaAk~h~vPv~VlAp~yKLsPlyp~~~ds~~~f~s~~~il~~~e--~--~~~~~ 307 (353)
T KOG1465|consen 232 NKVIIGTHAVLANGGLRAPSGVHTVALAAKHHSVPVIVLAPMYKLSPLYPTNPDSFHEFRSPSEILPFSE--G--DPAGR 307 (353)
T ss_pred ceEEEEeeeEecCCCeeccchHHHHHHHHHhcCCcEEEecchhhcCCCCCCCHHHHHhcCCcccccCccc--c--Ccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998863 2 13456
Q ss_pred ceeecceeeecCCCCccEEEeCCCCcCCC
Q 017312 329 ISVWNPAFDVTPANLITGIITEKGVVTKA 357 (373)
Q Consensus 329 ~~v~np~fDvtP~~lIt~iITE~Gi~~p~ 357 (373)
+++.||+|||+||+|||.+||+.|.+.|+
T Consensus 308 ~~v~nP~fDyvppeLVtLFIsNtgg~~PS 336 (353)
T KOG1465|consen 308 VDVLNPAFDYVPPELVTLFISNTGGVAPS 336 (353)
T ss_pred eeecccccccCChhheeEEEecCCCCChH
Confidence 89999999999999999999999999998
No 18
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=9e-51 Score=382.50 Aligned_cols=247 Identities=21% Similarity=0.201 Sum_probs=193.3
Q ss_pred HHHHhhHhcCcHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCC
Q 017312 48 SAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASE 127 (373)
Q Consensus 48 ~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPtav~l~nai~~~~~~i~~~~~~~~~ 127 (373)
+.|.+.+.+|+.|++.-+.-- +++. . .+ ...++.|.++||.|..+.|.++++++-- ..+
T Consensus 4 ~~~~~d~~~Gs~~~~~~~l~~----l~~~---~---~~-----~~~~~~l~~~~~~Ma~~~n~~~~~~~~~------~~~ 62 (253)
T PRK06372 4 KDLLSDNASGSADVAFKIISF----FSHN---D---ID-----ENIIKDLKNYFFGMGLVRNVCDSIISGP------NLR 62 (253)
T ss_pred HHhhcCccccHHHHHHHHHHH----Hhcc---c---hh-----hhHHHHHHHhCcchHHHHHHHHHHHccC------cCC
Confidence 457788999999987654322 2221 1 11 2377788999999999999888776321 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEE
Q 017312 128 ANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYC 207 (373)
Q Consensus 128 ~~e~~~~l~~~~~~~~~e~~~a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v 207 (373)
+++++..+. .+.+.|++++.++|. +++||||++| +++..+|..+ ++.++|||
T Consensus 63 ~~~~~~~~~-----------~~~~~~~~~A~~~i~------~dvILT~s~S--------~~v~~~l~~~---~~~~~V~v 114 (253)
T PRK06372 63 PKNLKLGIE-----------KHEKMAIEHAKPLFN------DSVIGTISSS--------QVLKAFISSS---EKIKSVYI 114 (253)
T ss_pred HHHHHHHHH-----------HHHHHHHHHHHhhcC------CCEEEEeCCc--------HHHHHHHHhc---CCCCEEEE
Confidence 455444332 466778999999996 4799999865 4666676543 34489999
Q ss_pred ecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 208 SETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 208 ~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
+||||++|| ++++++|.+.||+||+|+|++++++| ++||+|++|||+|++||+++||+|||++|++||+|+|||||+
T Consensus 115 ~ESrP~~eG-~~~a~~L~~~GI~vtli~Dsa~~~~m--~~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~ 191 (253)
T PRK06372 115 LESRPMLEG-IDMAKLLVKSGIDVVLLTDASMCEAV--LNVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSL 191 (253)
T ss_pred ecCCCchHH-HHHHHHHHHCCCCEEEEehhHHHHHH--HhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEE
Confidence 999999999 57899999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred ccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcCCCC
Q 017312 288 APLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAG 358 (373)
Q Consensus 288 a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~p~~ 358 (373)
|++|||++.++.......+.. .. . ..+++++++||+||+|||+|||+||||.|+++|++
T Consensus 192 ~~s~Kf~~~~~~~~~~~~~~~------~~----~--~~~~~l~v~Np~FD~TPpelI~~iITE~Gi~~pss 250 (253)
T PRK06372 192 TISMKIERNFLYSTYPNFKNH------PC----S--EWNIDIPCINRYFDKTPPDLIDYYINENGFVKPSD 250 (253)
T ss_pred eeccccCCCCccccccccccc------cc----c--cCCCCCceeCcCcCCCCHHHCCEEEcCCCcccccc
Confidence 999999976543221101010 00 0 12467899999999999999999999999999983
No 19
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=97.43 E-value=0.0022 Score=59.99 Aligned_cols=124 Identities=22% Similarity=0.109 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC----eeEEEEecCCCCCcchHHHHHHHhh
Q 017312 151 KAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV----LERAYCSETRPFNQGSRLTAFELVH 226 (373)
Q Consensus 151 ~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~----~~~V~v~EsrP~~qG~rlta~~L~~ 226 (373)
++|++.++++|. +|++|.--+ | +|+..+++...+..+ +++|+ +=| ..++.+|.+
T Consensus 3 ~~IA~~A~~~I~-----~g~~I~lds--G-------ST~~~~~~~L~~~~~~~~l~itvV-t~S-------~~~a~~l~~ 60 (218)
T TIGR00021 3 RAAAEAAAEYVE-----DGMVVGLGT--G-------STVAYFIEALGERVKQEGLDIVGV-PTS-------KQTAELARE 60 (218)
T ss_pred HHHHHHHHHhCC-----CCCEEEECC--c-------HHHHHHHHHHHHhhhccCCCEEEE-eCC-------HHHHHHHHH
Confidence 568889999999 899987643 3 467666666544322 34444 211 235667778
Q ss_pred CCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHH--HHHHhCCCeEEEeccCccccCCCCCCCccc
Q 017312 227 DRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA--LCAKFHNILFYVAAPLTSIDLTLSSGQEIV 304 (373)
Q Consensus 227 ~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA--~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ 304 (373)
.|+++. .+-...++|..|.|||.|-.+++++ |-|.-.+. -+......-+++++.++||..... +..+|
T Consensus 61 ~gi~v~--------~l~~~~~iDiafdGaD~id~~~~~i-kg~g~a~~~eKiia~~A~~~i~l~D~sK~~~~lg-~~plP 130 (218)
T TIGR00021 61 LGIPLS--------SLDEVPELDLAIDGADEVDPNLQLI-KGGGGALLREKIVASASKRFIVIADESKLVDKLG-KFPLP 130 (218)
T ss_pred CCCCEE--------cHhHCCccCEEEECCCeECCCCCEe-cccHHHHHHHHHHHHhhCcEEEEEEchhhhcccC-CCCcc
Confidence 899985 1111258999999999999998874 54432221 122224457899999999986543 33566
Q ss_pred cc
Q 017312 305 IE 306 (373)
Q Consensus 305 ie 306 (373)
+|
T Consensus 131 vE 132 (218)
T TIGR00021 131 VE 132 (218)
T ss_pred EE
Confidence 66
No 20
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=97.37 E-value=0.0017 Score=60.44 Aligned_cols=125 Identities=18% Similarity=0.085 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCC----CeeEEEEecCCCCCcchHHHHHHHhh
Q 017312 151 KAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEG----VLERAYCSETRPFNQGSRLTAFELVH 226 (373)
Q Consensus 151 ~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g----~~~~V~v~EsrP~~qG~rlta~~L~~ 226 (373)
+.|++.++++|. +|++|.--+ | +|+..+++...+.. ++++|+ +=| . .++.+|.+
T Consensus 3 ~~IA~~A~~~I~-----~g~~I~lds--G-------ST~~~l~~~L~~~~~~~~~~itvV-TnS------~-~~a~~l~~ 60 (213)
T cd01398 3 RAAARAAVDYVE-----DGMVIGLGT--G-------STVAYFIEALGERVREEGLNIVGV-PTS------F-QTEELARE 60 (213)
T ss_pred HHHHHHHHHhCC-----CCCEEEECc--h-------HHHHHHHHHHHHhhhccCCCEEEE-eCc------H-HHHHHHHh
Confidence 568889999999 899887743 2 46776766664432 345554 221 1 23456666
Q ss_pred CCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHH-HHHhCCCeEEEeccCccccCCCCCCCcccc
Q 017312 227 DRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLAL-CAKFHNILFYVAAPLTSIDLTLSSGQEIVI 305 (373)
Q Consensus 227 ~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~-~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~i 305 (373)
.|+++..+- ++.++|+.|+|||.|-.++.+..--|-..+-- +......-+|++++.+||...... ..+|+
T Consensus 61 ~~i~vi~lg--------~~~~~D~af~Gad~id~~~~~~~~~~~a~~kek~i~~~a~~~illaD~sK~~~~l~~-~~lPv 131 (213)
T cd01398 61 LGIPLTDLD--------EVPRLDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESKLVERLGE-FPLPV 131 (213)
T ss_pred CCCeEEeCC--------CccccCEEEECCCcCCCCcCcccChHHHHHHHHHHHHhcCeEEEEEecchhcccCCC-CCeeE
Confidence 788876655 44689999999999988875543333333322 223456688999999999876542 44666
Q ss_pred c
Q 017312 306 E 306 (373)
Q Consensus 306 e 306 (373)
|
T Consensus 132 E 132 (213)
T cd01398 132 E 132 (213)
T ss_pred E
Confidence 6
No 21
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=97.17 E-value=0.0062 Score=57.08 Aligned_cols=126 Identities=17% Similarity=0.085 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC---eeEEEEecCCCCCcchHHHHHHHh
Q 017312 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV---LERAYCSETRPFNQGSRLTAFELV 225 (373)
Q Consensus 149 a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~---~~~V~v~EsrP~~qG~rlta~~L~ 225 (373)
..++|++.++++|. +|++|.--+ | +|+..+++...+..+ +++|+ =+ . ..++..|.
T Consensus 6 ~K~~IA~~Aa~lI~-----dg~~IgLgs--G-------ST~~~l~~~L~~~~~~~~~itvV--t~-----S-~~~a~~l~ 63 (220)
T PRK00702 6 LKKAAAEAAAEYVE-----DGMIVGLGT--G-------STAAYFIDALGERVKEGLIIGGV--PT-----S-EASTELAK 63 (220)
T ss_pred HHHHHHHHHHHhCC-----CCCEEEECC--c-------HHHHHHHHHHHhhhccCCCEEEE--CC-----c-HHHHHHHH
Confidence 35678899999999 899987643 3 467767766643221 34444 11 1 22455677
Q ss_pred hCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHH--HHHHHhCCCeEEEeccCccccCCCCCCCcc
Q 017312 226 HDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSL--ALCAKFHNILFYVAAPLTSIDLTLSSGQEI 303 (373)
Q Consensus 226 ~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~l--A~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i 303 (373)
+.||++.. +-+-.++|..|.|||.|-.++.++---|-..+ -++|+.-+ -+++++..+||..... ...+
T Consensus 64 ~~gi~v~~--------l~~~~~iD~afdGaD~vd~~~~~ikg~g~a~~~ekiva~~A~-~~vil~D~sK~v~~lg-~~~l 133 (220)
T PRK00702 64 ELGIPLFD--------LNEVDSLDLYVDGADEIDPHLNLIKGGGAALTREKIVAAAAK-RFICIVDESKLVDVLG-KFPL 133 (220)
T ss_pred hCCCeEEc--------HHHCCccCEEEECCCeECCCCCcEECcHHHHHHHHHHHHhcC-cEEEEEEcchhhhhcC-CCCc
Confidence 78998761 11115899999999999988876655443333 34444433 5889999999976543 2345
Q ss_pred ccc
Q 017312 304 VIE 306 (373)
Q Consensus 304 ~ie 306 (373)
|+|
T Consensus 134 PvE 136 (220)
T PRK00702 134 PVE 136 (220)
T ss_pred cEE
Confidence 555
No 22
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=96.76 E-value=0.07 Score=50.99 Aligned_cols=125 Identities=12% Similarity=0.094 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhh-
Q 017312 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH- 226 (373)
Q Consensus 148 ~a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~- 226 (373)
...++|++.++++|. +|++|+-=+ | +|+..+.+..... .+++|+.- +.. .+.+|.+
T Consensus 76 ~~K~~IA~~Aa~~I~-----~g~tIfld~--G-------tT~~~la~~L~~~-~~ltVvTn-------sl~-ia~~l~~~ 132 (256)
T PRK10434 76 HKKELIAEAAVSLIH-----DGDSIILDA--G-------STVLQMVPLLSRF-NNITVMTN-------SLH-IVNALSEL 132 (256)
T ss_pred HHHHHHHHHHHhhCC-----CCCEEEEcC--c-------HHHHHHHHHhccC-CCeEEEEC-------CHH-HHHHHhhC
Confidence 345789999999999 899998743 2 4666666665432 24555532 111 2445554
Q ss_pred CC-CCeEEE-----------cchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCcccc
Q 017312 227 DR-IPATLI-----------ADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (373)
Q Consensus 227 ~G-I~vtlI-----------~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~ 294 (373)
.+ +.+.++ ....+-..+++-.+|+.|+|+++|-.++++...--...+--++-....-+|++|.+.||.
T Consensus 133 ~~~~~v~l~GG~~~~~~~~~~G~~a~~~l~~~~~D~afi~~~gi~~~~G~t~~~~~~~~k~~~~~~a~~~illaD~sKf~ 212 (256)
T PRK10434 133 DNEQTILMPGGTFRKKSASFHGQLAENAFEHFTFDKLFIGTDGIDLNAGVTTFNEVYTVSKAMCNAAREIILMADSSKFG 212 (256)
T ss_pred CCCCEEEEECCEEeCCCCeEECHHHHHHHHhCcCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHcCcEEEEECCcccC
Confidence 22 444432 223334456788999999999999888766432223455555666788899999999996
Q ss_pred C
Q 017312 295 L 295 (373)
Q Consensus 295 ~ 295 (373)
.
T Consensus 213 ~ 213 (256)
T PRK10434 213 R 213 (256)
T ss_pred C
Confidence 4
No 23
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=96.68 E-value=0.035 Score=52.93 Aligned_cols=123 Identities=13% Similarity=-0.005 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhh-
Q 017312 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH- 226 (373)
Q Consensus 148 ~a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~- 226 (373)
..-+.|++.++++|. +|++|.--| | +|++.+.+.... ++++|+.. + .. .+..|.+
T Consensus 78 ~~K~~IA~~Aa~~I~-----~g~~Ifld~--G-------sT~~~la~~L~~--~~ltVvTn-s------l~-ia~~l~~~ 133 (251)
T PRK13509 78 DEKVRIAKAASQLCN-----PGESVVINC--G-------STAFLLGRELCG--KPVQIITN-Y------LP-LANYLIDQ 133 (251)
T ss_pred HHHHHHHHHHHHhCC-----CCCEEEECC--c-------HHHHHHHHHhCC--CCeEEEeC-C------HH-HHHHHHhC
Confidence 345689999999999 899998865 3 467766666532 24555531 1 11 1334442
Q ss_pred CCCCeEE-----------EcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCccccC
Q 017312 227 DRIPATL-----------IADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDL 295 (373)
Q Consensus 227 ~GI~vtl-----------I~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~~ 295 (373)
.++++.+ +.... ...+++-.+|+.|+||++|-.+|-.........+--++-.+..-+|++|++.||..
T Consensus 134 ~~~~v~l~GG~~~~~~~~~~G~~-~~~l~~~~~d~aFig~~gi~~~G~~~~~~~e~~~k~~~~~~s~~~illaDssKfg~ 212 (251)
T PRK13509 134 EHDSVIIMGGQYNKSQSITLSPQ-GSENSLYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGE 212 (251)
T ss_pred CCCEEEEECCeEcCCcceeECHH-HHHHHhCcCCEEEECCCcCCCCcCCCCCHHHHHHHHHHHHHhCcEEEEEcccccCc
Confidence 2333322 22333 36778889999999999998776444454455554455566778899999999964
No 24
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=96.66 E-value=0.059 Score=47.85 Aligned_cols=124 Identities=17% Similarity=0.183 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhC-
Q 017312 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHD- 227 (373)
Q Consensus 149 a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~- 227 (373)
.-++|++.++++|. +|++|.-=+ | +|+..+.+...+. ++++|+-- + .. .+.+|.+.
T Consensus 5 ~K~~IA~~A~~~I~-----~~~~Ifld~--G-------tT~~~la~~L~~~-~~ltVvTn-s------l~-ia~~l~~~~ 61 (161)
T PF00455_consen 5 EKRAIARKAASLIE-----DGDTIFLDS--G-------TTTLELAKYLPDK-KNLTVVTN-S------LP-IANELSENP 61 (161)
T ss_pred HHHHHHHHHHHhCC-----CCCEEEEEC--c-------hHHHHHHHHhhcC-CceEEEEC-C------HH-HHHHHHhcC
Confidence 45678999999999 888887643 2 3666666665432 25555421 1 11 23445544
Q ss_pred CCCeEEE-----------cchHHHHHHHcCCCCEEEEcceeEecC-CCeecccchHHHHHHHHhCCCeEEEeccCccccC
Q 017312 228 RIPATLI-----------ADSAAAALMKDGRVSAVIVGADRVAAN-GDTANKIGTYSLALCAKFHNILFYVAAPLTSIDL 295 (373)
Q Consensus 228 GI~vtlI-----------~Dsa~~~~m~~~~vd~VivGAd~I~~n-G~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~~ 295 (373)
++++.++ ....+-..|++-++|+.|+|+++|-.+ |-......-..+--+.-++..-+|+++++.||..
T Consensus 62 ~~~vi~~GG~~~~~~~~~~G~~a~~~l~~~~~d~afi~~~gi~~~~G~~~~~~~~a~vk~~~~~~s~~~ill~D~sKf~~ 141 (161)
T PF00455_consen 62 NIEVILLGGEVNPKSLSFVGPIALEALRQFRFDKAFIGADGISEEGGLTTSDEEEAEVKRAMIENSKQVILLADSSKFGR 141 (161)
T ss_pred ceEEEEeCCEEEcCCCcEECchHHHHHHhhccceEEecccEecCCCccccchHHHHHHHHHHHHhcCeEEEEeChhhcCC
Confidence 3333222 122334556778999999999999985 4445677777777777778889999999999964
No 25
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=96.46 E-value=0.11 Score=50.12 Aligned_cols=125 Identities=11% Similarity=0.123 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhh-
Q 017312 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH- 226 (373)
Q Consensus 148 ~a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~- 226 (373)
+.-+.|++.++++|. +|++|+--+ | +|+..+.+.... .++++|+.-- .. .+.+|.+
T Consensus 91 ~~K~~IA~~Aa~~I~-----dgd~Ifld~--G-------tT~~~la~~L~~-~~~ltVvTns-------l~-ia~~l~~~ 147 (269)
T PRK09802 91 AMKRSVAKAAVELIQ-----PGHRVILDS--G-------TTTFEIARLMRK-HTDVIAMTNG-------MN-VANALLEA 147 (269)
T ss_pred HHHHHHHHHHHhhCC-----CCCEEEECC--c-------hHHHHHHHhcCc-CCCeEEEeCC-------HH-HHHHHHhC
Confidence 345689999999999 899998753 2 356666665532 3356666421 11 2445553
Q ss_pred CCCCeEEE-----------cchHHHHHHHcCCCCEEEEcceeEecCCCee-cccchHHHHHHHHhCCCeEEEeccCcccc
Q 017312 227 DRIPATLI-----------ADSAAAALMKDGRVSAVIVGADRVAANGDTA-NKIGTYSLALCAKFHNILFYVAAPLTSID 294 (373)
Q Consensus 227 ~GI~vtlI-----------~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~-nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~ 294 (373)
.++++.++ ....+-..+++-.+|+.|+||++|-.++++. ...--..+--++-....-+|++|++.||.
T Consensus 148 ~~~~v~llGG~~~~~~~~~~G~~a~~~l~~~~~d~afig~~gi~~~~G~t~~~~~ea~~kr~~i~~s~~~ill~D~sKf~ 227 (269)
T PRK09802 148 EGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFN 227 (269)
T ss_pred CCCEEEEECCEEecCCCceECHHHHHHHHhccCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHHcCcEEEEEeccccC
Confidence 35555433 2333445677789999999999998776654 44455666666666677779999999986
Q ss_pred C
Q 017312 295 L 295 (373)
Q Consensus 295 ~ 295 (373)
.
T Consensus 228 ~ 228 (269)
T PRK09802 228 R 228 (269)
T ss_pred C
Confidence 3
No 26
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=96.03 E-value=0.22 Score=47.53 Aligned_cols=125 Identities=14% Similarity=0.082 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhh-
Q 017312 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH- 226 (373)
Q Consensus 148 ~a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~- 226 (373)
..-++|++.++++|. +|++|+--+ | +|++.+.+.... .++++|+- -| .. .+.+|..
T Consensus 76 ~~K~~IA~~Aa~~I~-----~g~tIflD~--G-------tT~~~la~~L~~-~~~ltVvT-Ns------l~-ia~~l~~~ 132 (252)
T PRK10906 76 EEKERIARKVASQIP-----NGATLFIDI--G-------TTPEAVAHALLN-HSNLRIVT-NN------LN-VANTLMAK 132 (252)
T ss_pred HHHHHHHHHHHhhCC-----CCCEEEEcC--c-------HHHHHHHHHhcC-CCCcEEEE-Cc------HH-HHHHHhhC
Confidence 345689999999999 899998764 2 366666666532 23455542 21 11 2334442
Q ss_pred CCCCeEEE-----------cchHHHHHHHcCCCCEEEEcceeEecCCCe-ecccchHHHHHHHHhCCCeEEEeccCcccc
Q 017312 227 DRIPATLI-----------ADSAAAALMKDGRVSAVIVGADRVAANGDT-ANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (373)
Q Consensus 227 ~GI~vtlI-----------~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v-~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~ 294 (373)
.++.+.++ ....+-..+++-.+|+.|+|+++|-.+|++ .+...-..+--++-....-+|++|+++||.
T Consensus 133 ~~~~villGG~~~~~~~~~~G~~a~~~l~~~~~d~afi~~~Gi~~~~G~t~~~~~ea~~k~~~~~~a~~~illaD~sKf~ 212 (252)
T PRK10906 133 EDFRIILAGGELRSRDGGIIGEATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFG 212 (252)
T ss_pred CCCEEEEECCEEecCCCccCCHHHHHHHHhccCCEEEEcCCEECCCCCcCCCCHHHHHHHHHHHHhcCcEEEEEccchhC
Confidence 34443322 223344456778999999999999876554 555566666666666677889999999996
Q ss_pred C
Q 017312 295 L 295 (373)
Q Consensus 295 ~ 295 (373)
.
T Consensus 213 ~ 213 (252)
T PRK10906 213 R 213 (252)
T ss_pred C
Confidence 3
No 27
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=95.53 E-value=0.61 Score=44.15 Aligned_cols=124 Identities=10% Similarity=0.092 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHh-h
Q 017312 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELV-H 226 (373)
Q Consensus 148 ~a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~-~ 226 (373)
..-+.|++.++++|. +|++|.--+ | +|+..+.+.... +.++|+.- ... .+.+|. .
T Consensus 78 ~~K~~IA~~Aa~lI~-----~gd~Ifld~--G-------tT~~~l~~~L~~--~~ltVvTN-------s~~-ia~~l~~~ 133 (240)
T PRK10411 78 AHKADIAREALAWIE-----EGMVIALDA--S-------STCWYLARQLPD--INIQVFTN-------SHP-ICQELGKR 133 (240)
T ss_pred HHHHHHHHHHHHhCC-----CCCEEEEcC--c-------HHHHHHHHhhCC--CCeEEEeC-------CHH-HHHHHhcC
Confidence 355789999999999 899998754 2 366666665542 24555531 111 233444 2
Q ss_pred CCCCeEE-----------EcchHHHHHHHcCCCCEEEEcceeEecCCCee-cccchHHHHHHHHhCCCeEEEeccCcccc
Q 017312 227 DRIPATL-----------IADSAAAALMKDGRVSAVIVGADRVAANGDTA-NKIGTYSLALCAKFHNILFYVAAPLTSID 294 (373)
Q Consensus 227 ~GI~vtl-----------I~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~-nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~ 294 (373)
.++.+.+ +....+-..+++-.+|++|+|+++|..+|++. ...=...+--.+-....-+|+++++.||+
T Consensus 134 ~~~~vil~GG~~~~~~~~~~G~~a~~~l~~~~~d~afis~~gi~~~~G~~~~~~~ea~~k~~~~~~a~~~ill~D~sKf~ 213 (240)
T PRK10411 134 ERIQLISSGGTLERKYGCYVNPSLISQLKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFN 213 (240)
T ss_pred CCCEEEEECCEEeCCCCceECHHHHHHHHhcCCCEEEEeceeECCCCCcccCCHHHHHHHHHHHHHhCcEEEEEeccccC
Confidence 3444322 22333444567789999999999998766654 44444555556666777789999999996
Q ss_pred C
Q 017312 295 L 295 (373)
Q Consensus 295 ~ 295 (373)
.
T Consensus 214 ~ 214 (240)
T PRK10411 214 R 214 (240)
T ss_pred C
Confidence 4
No 28
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=94.56 E-value=0.87 Score=43.46 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhC-
Q 017312 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHD- 227 (373)
Q Consensus 149 a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~- 227 (373)
.-+.|++.++++|. +|++|+--| | +|.+.+.+.... .++++|+.- +... +..|...
T Consensus 77 eK~~IA~~Aa~lI~-----~g~~ifld~--G-------TT~~~la~~L~~-~~~ltviTN-------sl~i-a~~l~~~~ 133 (253)
T COG1349 77 EKRAIAKAAATLIE-----DGDTIFLDA--G-------TTTLALARALPD-DNNLTVITN-------SLNI-AAALLEKP 133 (253)
T ss_pred HHHHHHHHHHhhCC-----CCCEEEECC--C-------cHHHHHHHHhCc-CCCeEEEeC-------CHHH-HHHHHhCC
Confidence 45679999999999 899988765 3 366666655542 233666532 2222 3345543
Q ss_pred CCCe-----------EEEcchHHHHHHHcCCCCEEEEcceeEecCCCeeccc-chHHHHHHHHhCCCeEEEeccCccccC
Q 017312 228 RIPA-----------TLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKI-GTYSLALCAKFHNILFYVAAPLTSIDL 295 (373)
Q Consensus 228 GI~v-----------tlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nki-GT~~lA~~Ak~~~vPvyV~a~~~k~~~ 295 (373)
++.+ --+....+-..+++-.+|+.|+|+++|-.++++...- .-..+.-.+-....-+|+++.++||..
T Consensus 134 ~~~vi~~GG~~~~~~~~~~G~~a~~~l~~~~~d~aFig~~gi~~~~g~~~~~~~ea~~k~~~~~~a~~~~ll~D~sKf~~ 213 (253)
T COG1349 134 NIEVILLGGTVRKKSGSFVGPLAEEFLRQFNFDKAFIGADGIDLEGGLTTFNEEEAEVKRAMIEAAREVILLADSSKFGR 213 (253)
T ss_pred CCeEEEeCcEEEcCCCeEEcHHHHHHHHhCcccEEEEeccccCCCCCcCcCCHHHHHHHHHHHHhhCcEEEEEcCCccCC
Confidence 3333 1233455566778899999999999999887765443 445555566667788888999999864
Q ss_pred C
Q 017312 296 T 296 (373)
Q Consensus 296 ~ 296 (373)
.
T Consensus 214 ~ 214 (253)
T COG1349 214 V 214 (253)
T ss_pred c
Confidence 3
No 29
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=93.72 E-value=1.4 Score=42.04 Aligned_cols=124 Identities=12% Similarity=0.110 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhh-C
Q 017312 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH-D 227 (373)
Q Consensus 149 a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~-~ 227 (373)
.-++|++.++++|. +|++|+.-+ | +|++.+.+.... .++++|+-- | .. .+.+|.+ .
T Consensus 78 ~K~~IA~~Aa~lI~-----~g~tIflD~--G-------tT~~~la~~L~~-~~~ltvvTn-s------l~-i~~~l~~~~ 134 (252)
T PRK10681 78 EKRRAAQLAATLVE-----PNQTLFFDC--G-------TTTPWIIEAIDN-ELPFTAVCY-S------LN-TFLALQEKP 134 (252)
T ss_pred HHHHHHHHHHhhcC-----CCCEEEEEC--C-------ccHHHHHHhcCC-CCCeEEEEC-C------HH-HHHHHhhCC
Confidence 45789999999999 899998864 2 467766666532 224555531 1 11 2334543 3
Q ss_pred CCCeEEE-----------cchHHHHHHHcCCCCEEEEcceeEecCCCe-ecccchHHHHHHHHhCCCeEEEeccCccccC
Q 017312 228 RIPATLI-----------ADSAAAALMKDGRVSAVIVGADRVAANGDT-ANKIGTYSLALCAKFHNILFYVAAPLTSIDL 295 (373)
Q Consensus 228 GI~vtlI-----------~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v-~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~~ 295 (373)
++.+.++ .....-..+++-.+|+.|+|+++|-..+++ ....--..+.-+.-....-+|++|.+.||..
T Consensus 135 ~~~villGG~~~~~~~~~~G~~~~~~l~~~~~D~afig~~gi~~~~G~~~~~~~ea~vk~~~~~~a~~~illaD~sKf~~ 214 (252)
T PRK10681 135 HCRAILCGGEFHASNAIFKPLDFQQTLDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGK 214 (252)
T ss_pred CCEEEEECcEEecCcceeeCHHHHHHHHhhCCCEEEEeCceecCCCCcCCCCHHHHHHHHHHHHhhCcEEEEEcccccCc
Confidence 4443322 222333456778999999999999876554 4455555555555556777899999999963
No 30
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=93.70 E-value=0.18 Score=40.65 Aligned_cols=80 Identities=23% Similarity=0.260 Sum_probs=55.5
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCC----eEEEcch---H----HHHHHHcCCCCEEEEcceeE
Q 017312 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP----ATLIADS---A----AAALMKDGRVSAVIVGADRV 258 (373)
Q Consensus 190 l~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~----vtlI~Ds---a----~~~~m~~~~vd~VivGAd~I 258 (373)
+.+.+...+.| |++|.+++ |++.|.+.||+ +.++... . +...|+++++|.||.=.+
T Consensus 3 ~~~a~~l~~lG--~~i~AT~g---------Ta~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~-- 69 (95)
T PF02142_consen 3 VPLAKRLAELG--FEIYATEG---------TAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPY-- 69 (95)
T ss_dssp HHHHHHHHHTT--SEEEEEHH---------HHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE----
T ss_pred HHHHHHHHHCC--CEEEEChH---------HHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCC--
Confidence 34556666666 89998873 78889999999 4444444 2 778899999999975332
Q ss_pred ecCCCeecc-cchHHHHHHHHhCCCeEE
Q 017312 259 AANGDTANK-IGTYSLALCAKFHNILFY 285 (373)
Q Consensus 259 ~~nG~v~nk-iGT~~lA~~Ak~~~vPvy 285 (373)
+.--.. ...|.+--+|-.++||.+
T Consensus 70 ---~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 70 ---PFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp ---THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred ---CCcccccCCcHHHHHHHHHcCCCCc
Confidence 222222 378999999999999975
No 31
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=93.62 E-value=0.69 Score=38.38 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=59.6
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEc------chHHHHHHHc-CCCCEEEEcceeEecCC
Q 017312 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA------DSAAAALMKD-GRVSAVIVGADRVAANG 262 (373)
Q Consensus 190 l~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~------Dsa~~~~m~~-~~vd~VivGAd~I~~nG 262 (373)
+.+.+...+ ..|++|.+++ |++.|.+.||+|+.+. +..+...+++ +++|.||-=. +|
T Consensus 15 ~~~a~~l~~--~G~~i~AT~g---------Ta~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~-----~~ 78 (112)
T cd00532 15 VDLAPKLSS--DGFPLFATGG---------TSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLR-----DP 78 (112)
T ss_pred HHHHHHHHH--CCCEEEECcH---------HHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcC-----CC
Confidence 344455443 4588888863 6778999999998862 3557778888 9999997643 33
Q ss_pred Cee--cccchHHHHHHHHhCCCeEEEecc
Q 017312 263 DTA--NKIGTYSLALCAKFHNILFYVAAP 289 (373)
Q Consensus 263 ~v~--nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (373)
.-. -....|.+=.+|-.++||++--..
T Consensus 79 ~~~~~~~~dg~~iRR~A~~~~Ip~~T~~~ 107 (112)
T cd00532 79 RRDRCTDEDGTALLRLARLYKIPVTTPNA 107 (112)
T ss_pred CcccccCCChHHHHHHHHHcCCCEEECHH
Confidence 331 255678888899999999986433
No 32
>PLN02384 ribose-5-phosphate isomerase
Probab=91.44 E-value=3.8 Score=39.53 Aligned_cols=126 Identities=19% Similarity=0.116 Sum_probs=75.2
Q ss_pred HHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCe--eE-EEEecCCCCCcchHHHHHHHhhCCC
Q 017312 153 IGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVL--ER-AYCSETRPFNQGSRLTAFELVHDRI 229 (373)
Q Consensus 153 I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~--~~-V~v~EsrP~~qG~rlta~~L~~~GI 229 (373)
.+..++++++ +|.+|=-- || +|+.-+++...+..+. ++ +.++-|. ..|+..+.+.||
T Consensus 39 aA~~A~~~V~-----~gmvVGLG--TG-------STv~~~I~~La~r~~~~~l~~I~~VpTS------~~T~~~a~~~GI 98 (264)
T PLN02384 39 AAYKAVEFVE-----SGMVLGLG--TG-------STAKHAVDRIGELLRQGKLKNIIGIPTS------KKTHEQAVSLGI 98 (264)
T ss_pred HHHHHHHhcc-----CCCEEEec--ch-------HHHHHHHHHHHHhhhhccccceEEEcCc------HHHHHHHHHcCC
Confidence 4455677888 78775432 23 3666566554433221 22 4443332 335656678899
Q ss_pred CeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHH--HHHHhCCCeEEEeccCccccCCCCC-CCccccc
Q 017312 230 PATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA--LCAKFHNILFYVAAPLTSIDLTLSS-GQEIVIE 306 (373)
Q Consensus 230 ~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA--~~Ak~~~vPvyV~a~~~k~~~~~~~-~~~i~ie 306 (373)
|+.-+.+ . .++|..|=|||-|-+|+.++=-=|...+- ++|. ...-|++++...|+...... ...+|+|
T Consensus 99 pl~~l~~------v--~~iDiaiDGADEId~~lnlIKGGGgallrEKivA~-~A~~~IiI~DesK~V~~Lg~~~~plPVE 169 (264)
T PLN02384 99 PLSDLDS------H--PVVDLAIDGADEVDPNLNLVKGRGGSLLREKMIEG-ACKKFVVIVDESKLVKHIGGSGLAMPVE 169 (264)
T ss_pred cEecccc------C--CcccEEEECCceeCCCCCEEEeCcHHHHHHHHHHH-hcCeEEEEEeCcceecccCCCCCCEEEE
Confidence 9776544 2 78999999999999887665444432211 2222 33478999999999765432 2346666
Q ss_pred c
Q 017312 307 E 307 (373)
Q Consensus 307 ~ 307 (373)
-
T Consensus 170 V 170 (264)
T PLN02384 170 V 170 (264)
T ss_pred E
Confidence 3
No 33
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=90.73 E-value=3.6 Score=33.67 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=57.7
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEc-----chHHHHHHHcCCCCEEEEcceeEecCCCe
Q 017312 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA-----DSAAAALMKDGRVSAVIVGADRVAANGDT 264 (373)
Q Consensus 190 l~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~-----Dsa~~~~m~~~~vd~VivGAd~I~~nG~v 264 (373)
+.+.+..++. .+++|.+++ |++.|.+.||+|+.+. +..+...++++++|.||--.+ +.-
T Consensus 16 ~~~~~~l~~~--G~~l~aT~g---------T~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vIn~~~-----~~~ 79 (110)
T cd01424 16 VEIAKRLAEL--GFKLVATEG---------TAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPS-----GKR 79 (110)
T ss_pred HHHHHHHHHC--CCEEEEchH---------HHHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEEEECCC-----CCc
Confidence 3445555544 588887763 5777999999988763 356777788999999987643 221
Q ss_pred ecccchHHHHHHHHhCCCeEEEe
Q 017312 265 ANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
..-..|.+=.+|-.||||++-.
T Consensus 80 -~~~~~~~iRR~Av~~~ipl~T~ 101 (110)
T cd01424 80 -AIRDGFSIRRAALEYKVPYFTT 101 (110)
T ss_pred -cCccHHHHHHHHHHhCCCEEec
Confidence 1234588889999999999854
No 34
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=90.72 E-value=2.4 Score=33.47 Aligned_cols=80 Identities=20% Similarity=0.100 Sum_probs=53.9
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeE-EEc---c--hHHHHHHHcCCCCEEEEcceeEecCCCe
Q 017312 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPAT-LIA---D--SAAAALMKDGRVSAVIVGADRVAANGDT 264 (373)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vt-lI~---D--sa~~~~m~~~~vd~VivGAd~I~~nG~v 264 (373)
.+.+..++. .|++|.+++ |++.|.+.||+|. ++. + ..+...++++++|.||.=.+. .+..
T Consensus 4 ~~~~~l~~l--G~~i~AT~g---------Ta~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~---~~~~ 69 (90)
T smart00851 4 ELAKRLAEL--GFELVATGG---------TAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYP---LGAQ 69 (90)
T ss_pred HHHHHHHHC--CCEEEEccH---------HHHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCc---Ccce
Confidence 344555544 488888773 5677889999985 431 1 236667788999999875432 2333
Q ss_pred ecccchHHHHHHHHhCCCeEE
Q 017312 265 ANKIGTYSLALCAKFHNILFY 285 (373)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~vPvy 285 (373)
..+ -.+.+=-+|-.++||.+
T Consensus 70 ~~~-d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 70 PHE-DGKALRRAAENIDIPGA 89 (90)
T ss_pred ecc-CcHHHHHHHHHcCCCee
Confidence 333 56788888999999975
No 35
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=89.83 E-value=1.3 Score=36.82 Aligned_cols=78 Identities=27% Similarity=0.329 Sum_probs=54.1
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcc---------hHHHHHHHcCCCCEEEE----cc
Q 017312 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD---------SAAAALMKDGRVSAVIV----GA 255 (373)
Q Consensus 189 al~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~D---------sa~~~~m~~~~vd~Viv----GA 255 (373)
...+.+..++. .|++|.++ | |++.|.+.|++|+.+.. ..+--+++++++|.||- |.
T Consensus 15 ~~~~a~~l~~~--G~~i~aT~------g---Ta~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn~~~~~~ 83 (116)
T cd01423 15 LLPTAQKLSKL--GYKLYATE------G---TADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLPSNRG 83 (116)
T ss_pred HHHHHHHHHHC--CCEEEEcc------H---HHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEECCCCCC
Confidence 34455666554 48888766 2 67789999999988732 44666777899999987 33
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCeEE
Q 017312 256 DRVAANGDTANKIGTYSLALCAKFHNILFY 285 (373)
Q Consensus 256 d~I~~nG~v~nkiGT~~lA~~Ak~~~vPvy 285 (373)
+....+| |.+=..|-+++||++
T Consensus 84 ~~~~~~~--------~~iRr~Av~~~ip~i 105 (116)
T cd01423 84 KRVLDND--------YVMRRAADDFAVPLI 105 (116)
T ss_pred CccccCc--------EeeehhhHhhCCccc
Confidence 3222333 566677899999996
No 36
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=89.34 E-value=6.8 Score=36.99 Aligned_cols=125 Identities=19% Similarity=0.054 Sum_probs=74.5
Q ss_pred HHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC--eeEEEEecCCCCCcchHHHHHHHhhCCC
Q 017312 152 AIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV--LERAYCSETRPFNQGSRLTAFELVHDRI 229 (373)
Q Consensus 152 ~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~--~~~V~v~EsrP~~qG~rlta~~L~~~GI 229 (373)
..++.++++++ +|.+|=-- || ||+.-+++...+..+ .+++.++=| . .-|+..+.+.||
T Consensus 10 ~aa~~A~~~V~-----~gmvvGLG--TG-------STv~~~i~~L~~~~~~~~l~i~~Vpt---S---~~t~~~a~~~Gi 69 (228)
T PRK13978 10 MTLNDVLSQIN-----GDMTLGIG--TG-------STMELLLPQMAQLIKERGYNITGVCT---S---NKIAFLAKELGI 69 (228)
T ss_pred HHHHHHHHhCC-----CCCEEEeC--ch-------HHHHHHHHHHHHHhhccCccEEEEeC---c---HHHHHHHHHcCC
Confidence 45666788888 78765432 23 366656654433221 234444322 2 234555668899
Q ss_pred CeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHH---HHHHhCCCeEEEeccCccccCCCCCCCccccc
Q 017312 230 PATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA---LCAKFHNILFYVAAPLTSIDLTLSSGQEIVIE 306 (373)
Q Consensus 230 ~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA---~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ie 306 (373)
|+.-+.+ . .++|..|=|||-|-+|+.++ |=|-..+- ++|. ...-|++++..+|+.........+|+|
T Consensus 70 pl~~l~~------~--~~iDiaiDGADevd~~lnlI-KGgGgal~rEKiva~-~A~~~iii~D~sK~v~~Lg~~~plPVE 139 (228)
T PRK13978 70 KICEIND------V--DHIDLAIDGADEVDPSLNII-KGGGGALFREKVIDE-MASRFVVVVDETKIVQYLGETFKLPVE 139 (228)
T ss_pred cEechhh------C--CceeEEEecCceecCCccEE-ecCcHHHHHHHHHHH-hcCcEEEEEeCcceecccCCCCCeEEE
Confidence 9766543 2 68999999999999998776 44432221 2222 334788888989997654322346665
No 37
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=88.32 E-value=9.8 Score=35.88 Aligned_cols=126 Identities=21% Similarity=0.116 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHH--CCCeeEEEEecCCCCCcchHHHHHHHhhCC
Q 017312 151 KAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHS--EGVLERAYCSETRPFNQGSRLTAFELVHDR 228 (373)
Q Consensus 151 ~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~--~g~~~~V~v~EsrP~~qG~rlta~~L~~~G 228 (373)
+..+..+++++. +|.+|=.- || ||+..+++.+.+ ++. +.+..+-|. .-|+..+.+.|
T Consensus 8 ~~aa~~A~~~v~-----~gmviGlG--TG-------ST~~~fI~~Lg~~~~~e-~~i~~V~TS------~~t~~l~~~~G 66 (227)
T COG0120 8 KAAAKAALEYVK-----DGMVIGLG--TG-------STAAYFIEALGRRVKGE-LDIGGVPTS------FQTEELARELG 66 (227)
T ss_pred HHHHHHHHHHhc-----CCCEEEEc--Cc-------HHHHHHHHHHHHhhccC-ccEEEEeCC------HHHHHHHHHcC
Confidence 345566788888 76665442 23 588888887753 222 344433332 23566788999
Q ss_pred CCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHH-HHHHhCCCeEEEeccCccccCCCCCCCccccc
Q 017312 229 IPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA-LCAKFHNILFYVAAPLTSIDLTLSSGQEIVIE 306 (373)
Q Consensus 229 I~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA-~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ie 306 (373)
||+.-+.+ . ..+|..|=|||-|-.++..+=-=|...+= =+-.+...-|+|++..+|+....- ...+|+|
T Consensus 67 I~v~~l~~------~--~~lDl~iDGADEvd~~~~lIKGGGgAl~rEKIva~~ak~~IvIvDesKlV~~LG-~fplPVE 136 (227)
T COG0120 67 IPVSSLNE------V--DSLDLAIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVIVDESKLVEVLG-KFPLPVE 136 (227)
T ss_pred CeecCccc------c--CccceEeecccccCCCCCEEccChHHHHHHHHHHHhcCeEEEEEeCccchhhcC-CCCcCEE
Confidence 98876654 2 67999999999999998666444443321 133345678899999999965432 2345554
No 38
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=87.86 E-value=4.7 Score=35.16 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=59.2
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhC-CCCeEEEc------chHHHHHHHcCCCCEEEEcceeEecC
Q 017312 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHD-RIPATLIA------DSAAAALMKDGRVSAVIVGADRVAAN 261 (373)
Q Consensus 189 al~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~-GI~vtlI~------Dsa~~~~m~~~~vd~VivGAd~I~~n 261 (373)
++.+.+...+.=..|+++.+++ |++.|.+. ||+|+.+. +..+...++++++|.||-=.|-.
T Consensus 19 l~~~a~~l~~ll~Gf~l~AT~g---------Ta~~L~~~~Gi~v~~vi~~~~gg~~~i~~~I~~g~i~lVInt~dp~--- 86 (142)
T PRK05234 19 LVAWVKAHKDLLEQHELYATGT---------TGGLIQEATGLDVTRLLSGPLGGDQQIGALIAEGKIDMLIFFRDPL--- 86 (142)
T ss_pred HHHHHHHHHHHhcCCEEEEeCh---------HHHHHHhccCCeeEEEEcCCCCCchhHHHHHHcCceeEEEEecCCC---
Confidence 4455555555411377887774 57789999 99998763 23477778899999997644322
Q ss_pred CCeecccchHHHHHHHHhCCCeEEEecc
Q 017312 262 GDTANKIGTYSLALCAKFHNILFYVAAP 289 (373)
Q Consensus 262 G~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (373)
|.-...-..+.+=-+|-.||||++---.
T Consensus 87 ~~~~~~~D~~~IRR~Av~~~IP~~T~l~ 114 (142)
T PRK05234 87 TAQPHDPDVKALLRLADVWNIPVATNRA 114 (142)
T ss_pred CCCcccchHHHHHHHHHHcCCCEEcCHH
Confidence 2222133456788889999999986433
No 39
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=87.69 E-value=2.5 Score=39.72 Aligned_cols=100 Identities=26% Similarity=0.362 Sum_probs=63.2
Q ss_pred HhhCC-CCeEE-----EcchHH-HHHHHcCCCCEEEEcceeEecCCCeeccc----------chHHHHHHHHhCCCeEEE
Q 017312 224 LVHDR-IPATL-----IADSAA-AALMKDGRVSAVIVGADRVAANGDTANKI----------GTYSLALCAKFHNILFYV 286 (373)
Q Consensus 224 L~~~G-I~vtl-----I~Dsa~-~~~m~~~~vd~VivGAd~I~~nG~v~nki----------GT~~lA~~Ak~~~vPvyV 286 (373)
|...| -+++. ..|++. .++++-+++|.-++||=-|-.+|++.|-+ |+--++.-|| . +||
T Consensus 69 linaG~~~vt~~pg~~~f~sa~sf~~irGGhidv~vLGa~QVd~~Gnlanw~Ipgk~vpGmGGAmdl~~gak---k-vii 144 (225)
T COG2057 69 LINAGKQPVTALPGASVFDSADSFAMIRGGHIDVAVLGAAQVDEYGNLANWMIPGKMVPGMGGAMDLVTGAK---K-VIV 144 (225)
T ss_pred hhhCCCceeEecCCceEEchHHHHHHHhCCceEEEEecceeecccCceeeeeECCccccCCccchhhhcCCc---E-EEE
Confidence 44444 56666 557765 45567789999999999999999999864 3333333222 2 666
Q ss_pred eccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcCCCC
Q 017312 287 AAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAG 358 (373)
Q Consensus 287 ~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~p~~ 358 (373)
.-+..|=+ |. + ++...+ .+=.|....++.||||+|++.+.+
T Consensus 145 ~m~H~~k~-----g~--------~-ki~~~c-----------------tlplt~~~~v~~iiTdl~V~~~~~ 185 (225)
T COG2057 145 VMEHTKKS-----GV--------G-KILKEC-----------------TLPLTGNGCVDRVITDLAVFEFDP 185 (225)
T ss_pred Eeeeeccc-----CC--------C-cccCcc-----------------cccccCCCCceEEEeccEEEEecC
Confidence 65443321 11 1 111111 133567888999999999998874
No 40
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=86.57 E-value=1.8 Score=41.75 Aligned_cols=106 Identities=19% Similarity=0.177 Sum_probs=71.5
Q ss_pred cccccccH-HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCC----eEEEcchHHHHHHHcCCCCEEEEcce
Q 017312 182 ATAGYGTA-LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP----ATLIADSAAAALMKDGRVSAVIVGAD 256 (373)
Q Consensus 182 at~g~~ta-l~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~----vtlI~Dsa~~~~m~~~~vd~VivGAd 256 (373)
.|+|.|.+ ..+++.+.++|...+|.+.+.+|...-. ..+...++. .-+.....+...| ..+|.||--|.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~----~~~~~~~~~~~~~~Di~d~~~l~~a~--~g~d~V~H~Aa 75 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFL----KDLQKSGVKEYIQGDITDPESLEEAL--EGVDVVFHTAA 75 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccc----hhhhcccceeEEEeccccHHHHHHHh--cCCceEEEeCc
Confidence 45566665 4577888888865666666655543221 123333432 3333345667788 89999998887
Q ss_pred eEecCCC-------eecccchHHHHHHHHhCCCeEEEeccCccc
Q 017312 257 RVAANGD-------TANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (373)
Q Consensus 257 ~I~~nG~-------v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~ 293 (373)
-+-..|. -+|--||-.+--+|++++|+-+|.+.+...
T Consensus 76 ~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~v 119 (280)
T PF01073_consen 76 PVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISV 119 (280)
T ss_pred cccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcce
Confidence 7766662 257799999999999999999988776653
No 41
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.
Probab=76.83 E-value=25 Score=32.56 Aligned_cols=98 Identities=24% Similarity=0.297 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCC-----cchHHHHHHH
Q 017312 150 NKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFN-----QGSRLTAFEL 224 (373)
Q Consensus 150 ~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~-----qG~rlta~~L 224 (373)
.+.|+.++++.|. ||++|-. |.|.-..+...+.+ ++.+. +..|+-... .+..... .|
T Consensus 3 ~~~Ia~~aA~~i~-----dg~~v~l----------GiGiP~~va~~l~~-~~~l~-l~~E~G~~g~~p~p~~~~~~~-~l 64 (207)
T TIGR02428 3 RDQIAARAAQELK-----DGDYVNL----------GIGIPTLVANYLPE-GIEVF-LQSENGILGMGPAPEPGEEDP-DL 64 (207)
T ss_pred HHHHHHHHHHhcC-----CCCEEEE----------eecHHHHHHHHHhc-CCeEE-EEEeCceecCccCCCCCCcCH-HH
Confidence 5679999999999 8887653 33433334444443 44433 335543221 0000111 35
Q ss_pred hhCCC-CeE------EEcchHHHHHHHcCCCCEEEEcceeEecCCCee
Q 017312 225 VHDRI-PAT------LIADSAAAALMKDGRVSAVIVGADRVAANGDTA 265 (373)
Q Consensus 225 ~~~GI-~vt------lI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~ 265 (373)
.+.|. +++ ++..+....+++.+.+|..++||--|=..|.+-
T Consensus 65 ~~~g~~~~~~~~g~~~~~~~~~f~~~~~G~~dv~~lga~qvD~~GnvN 112 (207)
T TIGR02428 65 INAGKQPVTLLPGASYFDSADSFAMIRGGHVDVAVLGALQVSENGDLA 112 (207)
T ss_pred HhCCCCceeeccCcEEecChhheeeEcCCceeEEEechHHhCCCCccc
Confidence 55543 322 333333444567788999999998888888654
No 42
>PRK09932 glycerate kinase II; Provisional
Probab=76.03 E-value=4.1 Score=41.37 Aligned_cols=50 Identities=22% Similarity=0.199 Sum_probs=39.3
Q ss_pred HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCcccc
Q 017312 241 ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (373)
Q Consensus 241 ~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~ 294 (373)
..| ...|.||.|=-++ |.....--..+.+|-.|+.|+|||+++|.+...+
T Consensus 280 ~~l--~~ADlVITGEG~~--D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~~~~~ 329 (381)
T PRK09932 280 QAV--QGAALVITGEGRI--DSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDG 329 (381)
T ss_pred HHh--ccCCEEEECCCcc--cccccCCccHHHHHHHHHHcCCCEEEEecccCCC
Confidence 556 8999999998777 3344444567888999999999999999986543
No 43
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=74.65 E-value=22 Score=35.86 Aligned_cols=51 Identities=20% Similarity=0.153 Sum_probs=38.5
Q ss_pred HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCcccc
Q 017312 240 AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (373)
Q Consensus 240 ~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~ 294 (373)
-..+ +.+|.||.|=-|+=+. ++..|+ ...+|-+||.|+|||+++|.+.+-+
T Consensus 279 e~~v--~daDLVITGEGr~D~Q-s~~GK~-pigVA~~Akk~~vPvIaiaGs~~~~ 329 (378)
T COG1929 279 EDAV--KDADLVITGEGRIDSQ-SLHGKT-PIGVAKLAKKYGVPVIAIAGSLGED 329 (378)
T ss_pred HHhh--ccCCEEEeCCCccccc-ccCCcc-chHHHHhhhhhCCCEEEEecccccC
Confidence 3456 8999999998887322 333333 4567889999999999999987654
No 44
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=73.01 E-value=5.4 Score=40.45 Aligned_cols=50 Identities=16% Similarity=0.067 Sum_probs=39.3
Q ss_pred HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCcccc
Q 017312 241 ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (373)
Q Consensus 241 ~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~ 294 (373)
..+ ...|.||.|=-++ |.....--....+|-.|+.|+||++++|.+...+
T Consensus 279 ~~l--~~ADlVITGEG~~--D~Qtl~GK~p~~Va~~A~~~~vPviai~G~v~~~ 328 (375)
T TIGR00045 279 QKI--KDADLVITGEGRL--DRQSLMGKAPVGVAKRAKKYGVPVIAIAGSLGDG 328 (375)
T ss_pred HHh--cCCCEEEECCCcc--cccccCCchHHHHHHHHHHhCCeEEEEecccCCC
Confidence 456 8999999998777 3444444467889999999999999999986543
No 45
>PRK10342 glycerate kinase I; Provisional
Probab=70.58 E-value=6.6 Score=39.89 Aligned_cols=50 Identities=18% Similarity=0.089 Sum_probs=39.4
Q ss_pred HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCcccc
Q 017312 241 ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (373)
Q Consensus 241 ~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~ 294 (373)
..| ..+|.||.|==++ |.....=-....+|-.||.|+||++++|.+...+
T Consensus 280 ~~l--~~ADLVITGEG~~--D~QTl~GK~p~gVa~~A~~~~vPviai~G~~~~~ 329 (381)
T PRK10342 280 EHI--HDCTLVITGEGRI--DSQSIHGKVPIGVANVAKKYHKPVIGIAGSLTDD 329 (381)
T ss_pred HHh--ccCCEEEECCCcC--cccccCCccHHHHHHHHHHhCCCEEEEecccCCC
Confidence 456 8999999998776 3445555567788999999999999999986554
No 46
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=67.95 E-value=22 Score=28.47 Aligned_cols=40 Identities=20% Similarity=0.152 Sum_probs=29.5
Q ss_pred HHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 239 AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 239 ~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
+...+ +++|.||+=.|.|-- --+..+--.||.+++||+.+
T Consensus 42 l~~~i--~~aD~VIv~t~~vsH-------~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 42 LPSKI--KKADLVIVFTDYVSH-------NAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHhc--CCCCEEEEEeCCcCh-------HHHHHHHHHHHHcCCcEEEE
Confidence 44445 788999887776633 33566677899999999986
No 47
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=67.49 E-value=24 Score=38.11 Aligned_cols=91 Identities=19% Similarity=0.090 Sum_probs=60.8
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEE----cch-HHHHHHHcCCCCEEEEcceeEec-CCC----------e
Q 017312 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLI----ADS-AAAALMKDGRVSAVIVGADRVAA-NGD----------T 264 (373)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI----~Ds-a~~~~m~~~~vd~VivGAd~I~~-nG~----------v 264 (373)
...+|.|+-..=+. |..| ++.|.+.|+++++. +|. .+...++..++|.||=-|--... +-+ -
T Consensus 379 ~~mkiLVtGa~G~i-G~~l-~~~L~~~g~~v~~~~~~l~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~ 456 (668)
T PLN02260 379 PSLKFLIYGRTGWI-GGLL-GKLCEKQGIAYEYGKGRLEDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIR 456 (668)
T ss_pred CCceEEEECCCchH-HHHH-HHHHHhCCCeEEeeccccccHHHHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHH
Confidence 34567777655333 7676 56788889888532 332 45566766689998877643210 111 2
Q ss_pred ecccchHHHHHHHHhCCCeEEEeccCccc
Q 017312 265 ANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (373)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~ 293 (373)
+|-.||..++-+|+++|+++++....+-|
T Consensus 457 ~N~~gt~~l~~a~~~~g~~~v~~Ss~~v~ 485 (668)
T PLN02260 457 ANVVGTLTLADVCRENGLLMMNFATGCIF 485 (668)
T ss_pred HHhHHHHHHHHHHHHcCCeEEEEccccee
Confidence 78999999999999999998877544434
No 48
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=66.51 E-value=28 Score=32.28 Aligned_cols=71 Identities=15% Similarity=0.234 Sum_probs=46.0
Q ss_pred ccccHHHHHHHHHHCCC-eeE-EEEecCCCCCcchHHHHHHHhhCCCCeEEEc----------chHHHHHHHcCCCCEEE
Q 017312 185 GYGTALGVIRALHSEGV-LER-AYCSETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVI 252 (373)
Q Consensus 185 g~~tal~~l~~a~~~g~-~~~-V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~----------Dsa~~~~m~~~~vd~Vi 252 (373)
|-|+.+..|..+.++|. +.+ +.|.=++|..++.+. ..+.|||+..+. |..+...+++.++|.++
T Consensus 8 g~Gsn~~al~~~~~~~~l~~~i~~visn~~~~~~~~~----A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv 83 (207)
T PLN02331 8 GGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEY----ARENGIPVLVYPKTKGEPDGLSPDELVDALRGAGVDFVL 83 (207)
T ss_pred CCChhHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHH----HHHhCCCEEEeccccCCCcccchHHHHHHHHhcCCCEEE
Confidence 45777776666666664 333 455566787766432 456799997754 44555667888999988
Q ss_pred E-cceeEe
Q 017312 253 V-GADRVA 259 (373)
Q Consensus 253 v-GAd~I~ 259 (373)
+ |-.+++
T Consensus 84 ~agy~~il 91 (207)
T PLN02331 84 LAGYLKLI 91 (207)
T ss_pred EeCcchhC
Confidence 8 444543
No 49
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=65.10 E-value=27 Score=29.06 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=49.7
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhh-CCCCeEEEcc------hHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHH
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVH-DRIPATLIAD------SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA 274 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~-~GI~vtlI~D------sa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA 274 (373)
.|+++.+++ |+..|.+ .||+|+.+.- ..+...++++++|.||-=.+.. |.-....=.+.+=
T Consensus 27 Gf~i~AT~g---------Ta~~L~~~~Gi~v~~vk~~~~~g~~~i~~~i~~g~i~~VInt~~~~---~~~~~~~dg~~iR 94 (115)
T cd01422 27 RHRLVATGT---------TGLLIQEATGLTVNRMKSGPLGGDQQIGALIAEGEIDAVIFFRDPL---TAQPHEPDVKALL 94 (115)
T ss_pred CCEEEEech---------HHHHHHHhhCCcEEEEecCCCCchhHHHHHHHcCceeEEEEcCCCC---CCCcccccHHHHH
Confidence 466776663 5667887 8888886621 2366777889999997544322 3222133357888
Q ss_pred HHHHhCCCeEEEe
Q 017312 275 LCAKFHNILFYVA 287 (373)
Q Consensus 275 ~~Ak~~~vPvyV~ 287 (373)
.+|-.|+||++-.
T Consensus 95 r~a~~~~Ip~~Tt 107 (115)
T cd01422 95 RLCDVYNIPLATN 107 (115)
T ss_pred HHHHHcCCCEEEc
Confidence 8999999999853
No 50
>PLN02778 3,5-epimerase/4-reductase
Probab=63.58 E-value=29 Score=33.51 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.7
Q ss_pred ecccchHHHHHHHHhCCCeEEEecc
Q 017312 265 ANKIGTYSLALCAKFHNILFYVAAP 289 (373)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (373)
.|-.||..++-+|+++|+++++...
T Consensus 86 ~Nv~gt~~ll~aa~~~gv~~v~~sS 110 (298)
T PLN02778 86 ANVVGTLTLADVCRERGLVLTNYAT 110 (298)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEec
Confidence 6889999999999999999877643
No 51
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=63.32 E-value=7.2 Score=34.92 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=50.3
Q ss_pred HHHHHhhCCCCeEEEcchHHHH-HHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 220 TAFELVHDRIPATLIADSAAAA-LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 220 ta~~L~~~GI~vtlI~Dsa~~~-~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
+|..|.+.|++|.+..-+++.. -+ .+.|+|++||.--+ |..--..+.+.-.-...-.+.|+=+.
T Consensus 21 iA~~L~e~g~qvdi~dl~~~~~~~l--~~ydavVIgAsI~~--~h~~~~~~~Fv~k~~e~L~~kP~A~f 85 (175)
T COG4635 21 IASHLRESGIQVDIQDLHAVEEPAL--EDYDAVVIGASIRY--GHFHEAVQSFVKKHAEALSTKPSAFF 85 (175)
T ss_pred HHHHhhhcCCeeeeeehhhhhccCh--hhCceEEEecchhh--hhhHHHHHHHHHHHHHHHhcCCceEE
Confidence 4678999999999999999875 34 89999999996543 66667777777777777778886543
No 52
>PRK00208 thiG thiazole synthase; Reviewed
Probab=61.41 E-value=49 Score=31.69 Aligned_cols=107 Identities=17% Similarity=0.139 Sum_probs=64.9
Q ss_pred cccccHHHHHHHH---HHCC----CeeEEEEecC--CCCCcchHHHHHHHhhCCCCeE-EEcchHH-HHHHHcCCCCEEE
Q 017312 184 AGYGTALGVIRAL---HSEG----VLERAYCSET--RPFNQGSRLTAFELVHDRIPAT-LIADSAA-AALMKDGRVSAVI 252 (373)
Q Consensus 184 ~g~~tal~~l~~a---~~~g----~~~~V~v~Es--rP~~qG~rlta~~L~~~GI~vt-lI~Dsa~-~~~m~~~~vd~Vi 252 (373)
+|-.|+...++.| .+.+ .+..|+-++- -|...+.--.+++|.+.|..|- |++|+-. +.-+..-.++.|.
T Consensus 70 aG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vm 149 (250)
T PRK00208 70 AGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVM 149 (250)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeC
Confidence 3446777666544 3322 2556665543 2222222224678999999999 8887754 4445445666665
Q ss_pred EcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCccc
Q 017312 253 VGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (373)
Q Consensus 253 vGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~ 293 (373)
.-+.-|-+|-++.| -+.+..+.+..++||++-+.-.+.
T Consensus 150 Plg~pIGsg~gi~~---~~~i~~i~e~~~vpVIveaGI~tp 187 (250)
T PRK00208 150 PLGAPIGSGLGLLN---PYNLRIIIEQADVPVIVDAGIGTP 187 (250)
T ss_pred CCCcCCCCCCCCCC---HHHHHHHHHhcCCeEEEeCCCCCH
Confidence 55555555544555 556777777789999998765553
No 53
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=59.96 E-value=83 Score=24.67 Aligned_cols=58 Identities=7% Similarity=0.088 Sum_probs=35.3
Q ss_pred hCCCCeEEE--cc---hHHHHHHHcCCCCEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCeEEEe
Q 017312 226 HDRIPATLI--AD---SAAAALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 226 ~~GI~vtlI--~D---sa~~~~m~~~~vd~VivGAd~I~~nG~v~n-kiGT~~lA~~Ak~~~vPvyV~ 287 (373)
..|++++.. .. ..+....+..++|.|++|+.+- +.... ..|+..- -+.+..++|++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~dlvvig~~~~---~~~~~~~~~~~~~-~ll~~~~~pvliv 130 (130)
T cd00293 67 EAGVKVETVVLEGDPAEAILEAAEELGADLIVMGSRGR---SGLRRLLLGSVAE-RVLRHAPCPVLVV 130 (130)
T ss_pred cCCCceEEEEecCCCHHHHHHHHHHcCCCEEEEcCCCC---CccceeeeccHHH-HHHhCCCCCEEeC
Confidence 468877543 22 3455556678999999998653 22322 2344333 3446688888864
No 54
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=58.81 E-value=31 Score=32.89 Aligned_cols=115 Identities=19% Similarity=0.186 Sum_probs=67.7
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHH---HHCCC----eeEEEEecCC--CCCcchHHHHHHHhhCCCCeE-EEc-c
Q 017312 168 SKFSVLTHCNTGSLATAGYGTALGVIRAL---HSEGV----LERAYCSETR--PFNQGSRLTAFELVHDRIPAT-LIA-D 236 (373)
Q Consensus 168 ~~~~ILT~~~sgslat~g~~tal~~l~~a---~~~g~----~~~V~v~Esr--P~~qG~rlta~~L~~~GI~vt-lI~-D 236 (373)
.+.++|-- |+|-.|+...++.| .+.+. +..|+-++-. |...+.--.+++|.+.|..|- |++ |
T Consensus 61 ~~~~lLPN-------TaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D 133 (247)
T PF05690_consen 61 SGYTLLPN-------TAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDD 133 (247)
T ss_dssp CTSEEEEE--------TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-
T ss_pred cCCEECCc-------CCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCC
Confidence 46777742 23456777666544 44332 4455544432 444443335778999998875 444 6
Q ss_pred hHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCcc
Q 017312 237 SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTS 292 (373)
Q Consensus 237 sa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k 292 (373)
-.++.-+..-.+..|.-.+.=|-+|=++.|+ +.+-++-.+.+|||+|=+..-+
T Consensus 134 ~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~---~~l~~i~~~~~vPvIvDAGiG~ 186 (247)
T PF05690_consen 134 PVLAKRLEDAGCAAVMPLGSPIGSGRGIQNP---YNLRIIIERADVPVIVDAGIGT 186 (247)
T ss_dssp HHHHHHHHHTT-SEBEEBSSSTTT---SSTH---HHHHHHHHHGSSSBEEES---S
T ss_pred HHHHHHHHHCCCCEEEecccccccCcCCCCH---HHHHHHHHhcCCcEEEeCCCCC
Confidence 6677777777788888777777777777776 8899999999999999776554
No 55
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=58.28 E-value=1.2e+02 Score=29.19 Aligned_cols=88 Identities=15% Similarity=0.074 Sum_probs=55.3
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcch--HHHHHHHhhCCCCeEEEcchHHHHHHHcCC
Q 017312 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGS--RLTAFELVHDRIPATLIADSAAAALMKDGR 247 (373)
Q Consensus 170 ~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~--rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~ 247 (373)
.+++|.++..+ .....||.|...|-.--|.+.+ +- +.|. .-||+-|+ ..+++..
T Consensus 57 Vtvvs~Gp~~a-------~~~~~lr~aLAmGaD~avli~d-~~-~~g~D~~~tA~~La---------------~ai~~~~ 112 (256)
T PRK03359 57 VTALSVGGKAL-------TNAKGRKDVLSRGPDELIVVID-DQ-FEQALPQQTASALA---------------AAAQKAG 112 (256)
T ss_pred EEEEEECCcch-------hhHHHHHHHHHcCCCEEEEEec-Cc-ccCcCHHHHHHHHH---------------HHHHHhC
Confidence 67889886521 1235789998889876666543 32 2232 23455443 3445557
Q ss_pred CCEEEEcceeEecCCCeecccchHHH-HHHHHhCCCeEEEecc
Q 017312 248 VSAVIVGADRVAANGDTANKIGTYSL-ALCAKFHNILFYVAAP 289 (373)
Q Consensus 248 vd~VivGAd~I~~nG~v~nkiGT~~l-A~~Ak~~~vPvyV~a~ 289 (373)
+|.||.|-.++ || +|.++ +++|...|+|++-.+.
T Consensus 113 ~DLVl~G~~s~--D~------~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 113 FDLILCGDGSS--DL------YAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred CCEEEEcCccc--cC------CCCcHHHHHHHHhCCCceeeEE
Confidence 99999997665 44 33343 5889999999885544
No 56
>PRK05973 replicative DNA helicase; Provisional
Probab=58.15 E-value=1.7e+02 Score=27.71 Aligned_cols=116 Identities=14% Similarity=0.067 Sum_probs=60.8
Q ss_pred CCcEEEEecCCCccccccccc-HHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeE-------EE-----
Q 017312 168 SKFSVLTHCNTGSLATAGYGT-ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPAT-------LI----- 234 (373)
Q Consensus 168 ~~~~ILT~~~sgslat~g~~t-al~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vt-------lI----- 234 (373)
.|+.+|..+.+|+ |=++ ++.++..+.++|.+.-.|-.|-.|. ++. ..+...|++.. +.
T Consensus 63 ~Gsl~LIaG~PG~----GKT~lalqfa~~~a~~Ge~vlyfSlEes~~----~i~-~R~~s~g~d~~~~~~~~~~d~~d~~ 133 (237)
T PRK05973 63 PGDLVLLGARPGH----GKTLLGLELAVEAMKSGRTGVFFTLEYTEQ----DVR-DRLRALGADRAQFADLFEFDTSDAI 133 (237)
T ss_pred CCCEEEEEeCCCC----CHHHHHHHHHHHHHhcCCeEEEEEEeCCHH----HHH-HHHHHcCCChHHhccceEeecCCCC
Confidence 5777888777754 2222 3556777767777655666665542 222 23444455421 11
Q ss_pred -cchHHHHHHHcCCCCEEEEcceeEecCCCeecccch--HHHHHHHHhCCCeEEEeccCcc
Q 017312 235 -ADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGT--YSLALCAKFHNILFYVAAPLTS 292 (373)
Q Consensus 235 -~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT--~~lA~~Ak~~~vPvyV~a~~~k 292 (373)
.|..+..+.++.+.+.||+--=..+..+.--...+. ..+-..||++|+|++++++...
T Consensus 134 ~~~~ii~~l~~~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r 194 (237)
T PRK05973 134 CADYIIARLASAPRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDR 194 (237)
T ss_pred CHHHHHHHHHHhhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 122233444334567666533122211100012222 3356789999999999987654
No 57
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=57.88 E-value=45 Score=33.98 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=40.9
Q ss_pred HHHHHHHhhCCCCeEEEcchHH---HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 218 RLTAFELVHDRIPATLIADSAA---AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 218 rlta~~L~~~GI~vtlI~Dsa~---~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
.|...-|.+.||+|+.+-.... ...| +.+--+|+ ++.|..=+.-+ .---.+|-+||+||+|++|=
T Consensus 116 ~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI-~~nTkavf--~EtigNP~~~v--~Die~ia~iAh~~gvpliVD 183 (426)
T COG2873 116 NLFSHTLKRLGIEVRFVDPDDPENFEAAI-DENTKAVF--AETIGNPGLDV--LDIEAIAEIAHRHGVPLIVD 183 (426)
T ss_pred HHHHHHHHhcCcEEEEeCCCCHHHHHHHh-CcccceEE--EEeccCCCccc--cCHHHHHHHHHHcCCcEEEe
Confidence 4556668899999999875443 3334 13333443 35564333222 33446889999999999983
No 58
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=57.52 E-value=5.6 Score=40.33 Aligned_cols=52 Identities=21% Similarity=0.189 Sum_probs=33.3
Q ss_pred HHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCcccc
Q 017312 239 AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (373)
Q Consensus 239 ~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~ 294 (373)
.--.+ .++|.||.|=-++ |.....--....+|-+|+.|+|||+++|.....+
T Consensus 278 l~~~l--~~aDlVITGEG~~--D~Qtl~GK~p~~Va~~A~~~~vPviav~G~~~~~ 329 (377)
T PF02595_consen 278 LEERL--EDADLVITGEGRL--DAQTLAGKVPGGVARLAKKHGVPVIAVAGSVDLD 329 (377)
T ss_dssp HHHHC--CC-SEEEE--CEC--STTTTTTCHHHHHHCCHCCTT--EEEEECEC-TT
T ss_pred HHHHh--cCCCEEEECcccc--ccccCCCcHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 34556 8999999998775 3333333456777889999999999999876544
No 59
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=57.36 E-value=1.4e+02 Score=27.00 Aligned_cols=38 Identities=5% Similarity=0.023 Sum_probs=26.2
Q ss_pred CCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccC
Q 017312 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 246 ~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
.+=|.+|+ |..+|. .--+..++-.||++|+|++.++..
T Consensus 110 ~~~Dv~I~----iS~SG~---t~~~i~~~~~ak~~g~~iI~iT~~ 147 (192)
T PRK00414 110 REGDVLLG----ISTSGN---SGNIIKAIEAARAKGMKVITLTGK 147 (192)
T ss_pred CCCCEEEE----EeCCCC---CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45566654 445563 334566788999999999998754
No 60
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=56.76 E-value=1.4e+02 Score=30.11 Aligned_cols=87 Identities=15% Similarity=0.099 Sum_probs=46.4
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEc-c-hHHHHHHHcCCCCEEEEcceeEe-cCCCeecc
Q 017312 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA-D-SAAAALMKDGRVSAVIVGADRVA-ANGDTANK 267 (373)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~-D-sa~~~~m~~~~vd~VivGAd~I~-~nG~v~nk 267 (373)
.++....+.|. +|++. .|.+.+..-....+...|++++.+. | ..+...++..+...|++ +... .+|.++.
T Consensus 83 ~~l~~ll~~GD--~Vlv~--~~~y~~~~~~~~~~~~~g~~v~~~~~d~~~l~~~i~~~~tklV~i--e~p~NPtG~v~d- 155 (385)
T PRK08574 83 TLFFSLLKAGD--RVVLP--MEAYGTTLRLLKSLEKFGVKVVLAYPSTEDIIEAIKEGRTKLVFI--ETMTNPTLKVID- 155 (385)
T ss_pred HHHHHHhCCCC--EEEEc--CCCchhHHHHHHHhhccCcEEEEECCCHHHHHHhcCccCceEEEE--ECCCCCCCEecC-
Confidence 34444444453 45544 4555443222233466788887642 2 33444442225555554 3332 2454444
Q ss_pred cchHHHHHHHHhCCCeEEE
Q 017312 268 IGTYSLALCAKFHNILFYV 286 (373)
Q Consensus 268 iGT~~lA~~Ak~~~vPvyV 286 (373)
--.++-+||++|++++|
T Consensus 156 --l~~I~~la~~~gi~liv 172 (385)
T PRK08574 156 --VPEVAKAAKELGAILVV 172 (385)
T ss_pred --HHHHHHHHHHcCCEEEE
Confidence 23677889999999987
No 61
>PRK13936 phosphoheptose isomerase; Provisional
Probab=56.42 E-value=1.6e+02 Score=26.77 Aligned_cols=37 Identities=8% Similarity=0.123 Sum_probs=25.7
Q ss_pred CCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEecc
Q 017312 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (373)
Q Consensus 246 ~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (373)
++=|.+|+ |...|..- =+..++-.||+.|+|++.++.
T Consensus 110 ~~~Dv~i~----iS~sG~t~---~~~~~~~~ak~~g~~iI~IT~ 146 (197)
T PRK13936 110 QPGDVLLA----ISTSGNSA---NVIQAIQAAHEREMHVVALTG 146 (197)
T ss_pred CCCCEEEE----EeCCCCcH---HHHHHHHHHHHCCCeEEEEEC
Confidence 45576664 44556322 256678899999999999865
No 62
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=56.16 E-value=1.1e+02 Score=24.69 Aligned_cols=61 Identities=15% Similarity=0.066 Sum_probs=38.7
Q ss_pred HhhCCCCeEEEc--c----hHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 224 LVHDRIPATLIA--D----SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 224 L~~~GI~vtlI~--D----sa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
+.+.|+++..+. . ..+..+.++.++|.|++|...=...+ ---.|+-.-. +.++-+.||.++
T Consensus 65 ~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~--~~~lGs~~~~-v~~~~~~pvlvv 131 (132)
T cd01988 65 AASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLR--DRLFGGVIDQ-VLESAPCDVAVV 131 (132)
T ss_pred hhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCcc--ceecCchHHH-HHhcCCCCEEEe
Confidence 446788877554 2 24555566778999999998532211 1224664444 467788999875
No 63
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=55.62 E-value=43 Score=32.64 Aligned_cols=59 Identities=20% Similarity=0.134 Sum_probs=44.5
Q ss_pred HHHHHHHcCCCCEEEEcceeEecCCC--------eecccchHHHHHHHHhCCCeEEEeccCccccCC
Q 017312 238 AAAALMKDGRVSAVIVGADRVAANGD--------TANKIGTYSLALCAKFHNILFYVAAPLTSIDLT 296 (373)
Q Consensus 238 a~~~~m~~~~vd~VivGAd~I~~nG~--------v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~~~ 296 (373)
.+..++++.+.|.||--|--..-|+. .+|-.|+..+|.+|++.|.|++=+..-|-||-.
T Consensus 41 ~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~ 107 (281)
T COG1091 41 AVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGE 107 (281)
T ss_pred HHHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCC
Confidence 35556666677877776654444443 378999999999999999999999888888744
No 64
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=54.11 E-value=33 Score=27.67 Aligned_cols=87 Identities=18% Similarity=0.277 Sum_probs=54.1
Q ss_pred ccccH-HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHc---CCCCEEEEcceeEec
Q 017312 185 GYGTA-LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKD---GRVSAVIVGADRVAA 260 (373)
Q Consensus 185 g~~ta-l~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~---~~vd~VivGAd~I~~ 260 (373)
|||.. ..+++.+.+.+ ..|++.|..|.. ..++.+.|+++.+ -|..=...+++ .+++.|++..+
T Consensus 5 G~g~~~~~i~~~L~~~~--~~vvvid~d~~~------~~~~~~~~~~~i~-gd~~~~~~l~~a~i~~a~~vv~~~~---- 71 (116)
T PF02254_consen 5 GYGRIGREIAEQLKEGG--IDVVVIDRDPER------VEELREEGVEVIY-GDATDPEVLERAGIEKADAVVILTD---- 71 (116)
T ss_dssp S-SHHHHHHHHHHHHTT--SEEEEEESSHHH------HHHHHHTTSEEEE-S-TTSHHHHHHTTGGCESEEEEESS----
T ss_pred cCCHHHHHHHHHHHhCC--CEEEEEECCcHH------HHHHHhccccccc-ccchhhhHHhhcCccccCEEEEccC----
Confidence 56664 45667776644 678888876542 4568888977555 44443344433 45566665554
Q ss_pred CCCeecccchHHHHHHHHh-CC-CeEEEecc
Q 017312 261 NGDTANKIGTYSLALCAKF-HN-ILFYVAAP 289 (373)
Q Consensus 261 nG~v~nkiGT~~lA~~Ak~-~~-vPvyV~a~ 289 (373)
+...+..+++.||. ++ +++++.+.
T Consensus 72 -----~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 72 -----DDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp -----SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred -----CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 67788899999998 43 56666544
No 65
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=53.99 E-value=1.8e+02 Score=26.67 Aligned_cols=37 Identities=5% Similarity=0.113 Sum_probs=24.6
Q ss_pred CCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEecc
Q 017312 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (373)
Q Consensus 246 ~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (373)
.+=|.+|+ |..+|..-| ...++-.||++|.|+++++.
T Consensus 108 ~~gDvli~----iS~SG~s~~---v~~a~~~Ak~~G~~vI~IT~ 144 (196)
T PRK10886 108 HAGDVLLA----ISTRGNSRD---IVKAVEAAVTRDMTIVALTG 144 (196)
T ss_pred CCCCEEEE----EeCCCCCHH---HHHHHHHHHHCCCEEEEEeC
Confidence 44466554 444554332 45667799999999999865
No 66
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=52.80 E-value=71 Score=29.12 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=39.5
Q ss_pred cccHHH-HHHHHHHCCCeeEEEE-ecCCCCCcchHHHHHHHhhCCCCeEEEc----------chHHHHHHHcCCCCEEEE
Q 017312 186 YGTALG-VIRALHSEGVLERAYC-SETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVIV 253 (373)
Q Consensus 186 ~~tal~-~l~~a~~~g~~~~V~v-~EsrP~~qG~rlta~~L~~~GI~vtlI~----------Dsa~~~~m~~~~vd~Viv 253 (373)
-|+.+. ++....+.+....|.+ .=.||..++. ....+.|||+..+. |..+...++..++|.+++
T Consensus 10 ~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~----~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~ 85 (190)
T TIGR00639 10 NGSNLQAIIDACKEGKIPASVVLVISNKPDAYGL----ERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEVDLVVL 85 (190)
T ss_pred CChhHHHHHHHHHcCCCCceEEEEEECCccchHH----HHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEE
Confidence 355554 4444444444444443 3344554332 23567899998755 345566677788998876
Q ss_pred c-ceeEe
Q 017312 254 G-ADRVA 259 (373)
Q Consensus 254 G-Ad~I~ 259 (373)
- -..++
T Consensus 86 ~~~~~il 92 (190)
T TIGR00639 86 AGFMRIL 92 (190)
T ss_pred eCcchhC
Confidence 4 33444
No 67
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=52.67 E-value=14 Score=34.29 Aligned_cols=76 Identities=25% Similarity=0.250 Sum_probs=45.2
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCC-CeEEEc-chHHHHHHHc
Q 017312 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI-PATLIA-DSAAAALMKD 245 (373)
Q Consensus 168 ~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI-~vtlI~-Dsa~~~~m~~ 245 (373)
.|++||=.+ || +||.|++- ... -|+..+|+-+|-.|.+- ....+.|...|+ +++++. |...++ -..
T Consensus 72 pg~~VLeIG-tG----sGY~aAll--a~l--vg~~g~Vv~vE~~~~l~--~~A~~~l~~~~~~nv~~~~gdg~~g~-~~~ 139 (209)
T PF01135_consen 72 PGDRVLEIG-TG----SGYQAALL--AHL--VGPVGRVVSVERDPELA--ERARRNLARLGIDNVEVVVGDGSEGW-PEE 139 (209)
T ss_dssp TT-EEEEES--T----TSHHHHHH--HHH--HSTTEEEEEEESBHHHH--HHHHHHHHHHTTHSEEEEES-GGGTT-GGG
T ss_pred CCCEEEEec-CC----CcHHHHHH--HHh--cCccceEEEECccHHHH--HHHHHHHHHhccCceeEEEcchhhcc-ccC
Confidence 789999775 23 37877642 221 26677899999877652 223446777788 577666 544443 233
Q ss_pred CCCCEEEEcc
Q 017312 246 GRVSAVIVGA 255 (373)
Q Consensus 246 ~~vd~VivGA 255 (373)
...|.+++++
T Consensus 140 apfD~I~v~~ 149 (209)
T PF01135_consen 140 APFDRIIVTA 149 (209)
T ss_dssp -SEEEEEESS
T ss_pred CCcCEEEEee
Confidence 5667776665
No 68
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=52.46 E-value=2.2e+02 Score=27.32 Aligned_cols=63 Identities=16% Similarity=0.079 Sum_probs=43.7
Q ss_pred HHHHhhCCCCeEEEcchHHHH--HHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccC
Q 017312 221 AFELVHDRIPATLIADSAAAA--LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 221 a~~L~~~GI~vtlI~Dsa~~~--~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
++.|...|++|.++.|....+ +..-..=|.||+ |.-.|. .-=+..++-.||++|+|++.++..
T Consensus 149 ~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~----iS~sG~---t~e~i~~a~~ak~~ga~vIaiT~~ 213 (281)
T COG1737 149 AYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIA----ISFSGY---TREIVEAAELAKERGAKVIAITDS 213 (281)
T ss_pred HHHHHHcCCceeEecchHHHHHHHHhCCCCCEEEE----EeCCCC---cHHHHHHHHHHHHCCCcEEEEcCC
Confidence 567889999999999998775 111244455543 333442 233567788999999999998764
No 69
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=51.29 E-value=48 Score=32.97 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=22.7
Q ss_pred cceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCc
Q 017312 254 GADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (373)
Q Consensus 254 GAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (373)
+.|.|..|. .++..+++|+.+|||++..++.+
T Consensus 92 ~pDlVi~d~------~~~~~~~~A~~~giP~v~~~~~~ 123 (392)
T TIGR01426 92 RPDLIVYDI------ASWTGRLLARKWDVPVISSFPTF 123 (392)
T ss_pred CCCEEEECC------ccHHHHHHHHHhCCCEEEEehhh
Confidence 456665554 34556788999999999887654
No 70
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=51.24 E-value=74 Score=29.23 Aligned_cols=94 Identities=24% Similarity=0.208 Sum_probs=56.5
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCC
Q 017312 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGR 247 (373)
Q Consensus 168 ~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~ 247 (373)
.|..||..+- | ..+..-++.+.+.|-.++|+-.+..| .+ .+|.+.| .++++.-.--...+ ..
T Consensus 8 ~gk~vlVvGg-G-------~va~rk~~~Ll~~ga~VtVvsp~~~~-----~l--~~l~~~~-~i~~~~~~~~~~dl--~~ 69 (205)
T TIGR01470 8 EGRAVLVVGG-G-------DVALRKARLLLKAGAQLRVIAEELES-----EL--TLLAEQG-GITWLARCFDADIL--EG 69 (205)
T ss_pred CCCeEEEECc-C-------HHHHHHHHHHHHCCCEEEEEcCCCCH-----HH--HHHHHcC-CEEEEeCCCCHHHh--CC
Confidence 3456776642 1 23466667777788877776544322 22 2566666 77777643323334 56
Q ss_pred CCEEEEcceeEecCCCe-ecccchHHHHHHHHhCCCeEEEecc
Q 017312 248 VSAVIVGADRVAANGDT-ANKIGTYSLALCAKFHNILFYVAAP 289 (373)
Q Consensus 248 vd~VivGAd~I~~nG~v-~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (373)
.+.|+. +-|+- .| ..++..|+..|+||.++-.
T Consensus 70 ~~lVi~------at~d~~ln----~~i~~~a~~~~ilvn~~d~ 102 (205)
T TIGR01470 70 AFLVIA------ATDDEELN----RRVAHAARARGVPVNVVDD 102 (205)
T ss_pred cEEEEE------CCCCHHHH----HHHHHHHHHcCCEEEECCC
Confidence 666643 33443 44 3788899999999998753
No 71
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=50.14 E-value=2e+02 Score=27.74 Aligned_cols=95 Identities=19% Similarity=0.065 Sum_probs=61.1
Q ss_pred cHHHHHHHH---HHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCe
Q 017312 188 TALGVIRAL---HSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDT 264 (373)
Q Consensus 188 tal~~l~~a---~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v 264 (373)
|+...+... +.+|..-+|++.-| +.+ ++..+.+.|||+....+ .+.+|+.|=|||-+-+|...
T Consensus 53 tv~~~v~~i~q~l~~~~l~~vvgVPt-----s~~-s~q~~~~~gi~l~~~d~--------hp~iDlaidgADEvd~nln~ 118 (261)
T KOG3075|consen 53 TVVYAVDRIGQLLFDGDLGNVVGVPT-----SFR-SAQLALEYGIPLSDLDS--------HPVIDLAIDGADEVDENLNL 118 (261)
T ss_pred HHHHHHHHHHHHhcCCCcCceEeccc-----chh-hHHHHHhcCCccccCCC--------CceeEEEecCchhhCcCcce
Confidence 555444333 55566555554433 223 45567899999876654 48999999999999999877
Q ss_pred ecccchHH-HHHHHHhCCCeEEEeccCccccCC
Q 017312 265 ANKIGTYS-LALCAKFHNILFYVAAPLTSIDLT 296 (373)
Q Consensus 265 ~nkiGT~~-lA~~Ak~~~vPvyV~a~~~k~~~~ 296 (373)
+---|-.. =-..---..+-|+|++...|+...
T Consensus 119 ikggGg~l~qEk~v~~~akkfiviad~~k~~~~ 151 (261)
T KOG3075|consen 119 IKGGGGCLLQEKDVEGAAKKFIVIADSRKGSKG 151 (261)
T ss_pred EEeccchhhHHHHHHHhhhceEEEeeccccchh
Confidence 64333322 112222345678999999998844
No 72
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=50.03 E-value=96 Score=29.71 Aligned_cols=106 Identities=18% Similarity=0.148 Sum_probs=61.7
Q ss_pred cccccHHHHHHHH---HHCCC----eeEEEEecC--CCCCcchHHHHHHHhhCCCCeE-EEcchH-HHHHHHcCCCCEEE
Q 017312 184 AGYGTALGVIRAL---HSEGV----LERAYCSET--RPFNQGSRLTAFELVHDRIPAT-LIADSA-AAALMKDGRVSAVI 252 (373)
Q Consensus 184 ~g~~tal~~l~~a---~~~g~----~~~V~v~Es--rP~~qG~rlta~~L~~~GI~vt-lI~Dsa-~~~~m~~~~vd~Vi 252 (373)
+|-.|+...++.| .+.+. +..|+-++- -|.....--.+++|.+.|..|- |+.|+- .+.-+..-.++.|.
T Consensus 70 aG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vm 149 (248)
T cd04728 70 AGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVM 149 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeC
Confidence 3445776655443 44322 444554322 1222222124678999999998 888765 34445445666665
Q ss_pred EcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCcc
Q 017312 253 VGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTS 292 (373)
Q Consensus 253 vGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k 292 (373)
..+.-|-+|-++.| -+.+..+.+..++||++=+.-.+
T Consensus 150 Plg~pIGsg~Gi~~---~~~I~~I~e~~~vpVI~egGI~t 186 (248)
T cd04728 150 PLGSPIGSGQGLLN---PYNLRIIIERADVPVIVDAGIGT 186 (248)
T ss_pred CCCcCCCCCCCCCC---HHHHHHHHHhCCCcEEEeCCCCC
Confidence 55555544544545 56667777778999999776554
No 73
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=48.14 E-value=82 Score=28.67 Aligned_cols=99 Identities=24% Similarity=0.188 Sum_probs=53.5
Q ss_pred EEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEc---chHHHHHHHcCCC
Q 017312 172 VLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA---DSAAAALMKDGRV 248 (373)
Q Consensus 172 ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~---Dsa~~~~m~~~~v 248 (373)
|+..+-+|.+ | ..+++.+.+.+...++++ |+.. .. .+.+|...|+.+.... ..++...+ +.+
T Consensus 1 I~V~GatG~~---G----~~v~~~L~~~~~~V~~l~---R~~~--~~-~~~~l~~~g~~vv~~d~~~~~~l~~al--~g~ 65 (233)
T PF05368_consen 1 ILVTGATGNQ---G----RSVVRALLSAGFSVRALV---RDPS--SD-RAQQLQALGAEVVEADYDDPESLVAAL--KGV 65 (233)
T ss_dssp EEEETTTSHH---H----HHHHHHHHHTTGCEEEEE---SSSH--HH-HHHHHHHTTTEEEES-TT-HHHHHHHH--TTC
T ss_pred CEEECCccHH---H----HHHHHHHHhCCCCcEEEE---eccc--hh-hhhhhhcccceEeecccCCHHHHHHHH--cCC
Confidence 4555555544 1 234455544554444443 3331 12 2557888898765333 24556667 778
Q ss_pred CEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEecc
Q 017312 249 SAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (373)
Q Consensus 249 d~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (373)
|.|++--.... ---.-....++-+|++.||+.||...
T Consensus 66 d~v~~~~~~~~----~~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 66 DAVFSVTPPSH----PSELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp SEEEEESSCSC----CCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred ceEEeecCcch----hhhhhhhhhHHHhhhccccceEEEEE
Confidence 87764332221 11122345678889999999999644
No 74
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=47.61 E-value=3.4e+02 Score=28.24 Aligned_cols=89 Identities=9% Similarity=0.032 Sum_probs=47.5
Q ss_pred HHHHCCCeeEEEEecCC-CCCcch-HHHHHHHhhCCCCeEEEc-----c-hHHHHHHHcCCCCEEEEcceeEec-CCCee
Q 017312 195 ALHSEGVLERAYCSETR-PFNQGS-RLTAFELVHDRIPATLIA-----D-SAAAALMKDGRVSAVIVGADRVAA-NGDTA 265 (373)
Q Consensus 195 ~a~~~g~~~~V~v~Esr-P~~qG~-rlta~~L~~~GI~vtlI~-----D-sa~~~~m~~~~vd~VivGAd~I~~-nG~v~ 265 (373)
.+...|. +|++.... +-..|. ++ .+.+...|+.+..+. | ......+ .++...|++-...-+. +| .-
T Consensus 155 ~~l~~Gd--eVIvs~~e~v~~ggs~~i-~~~~~~~G~~~~~v~~~~~~~l~dle~aI-~~~T~lv~~~h~sN~~~~G-~~ 229 (454)
T TIGR00474 155 NTLAKGK--EVIVSRGELVEIGGSFRI-PDVMEQSGAKLVEVGTTNRTHLKDYEDAI-TENTALLLKVHTSNYRIVG-FT 229 (454)
T ss_pred HHhCCcC--EEEECCChhhhhcchhhH-HHHHHHcCCEEEEeCCCCCCCHHHHHHhc-CcCCEEEEEEccCcccccC-CC
Confidence 4444444 67776543 322232 44 455677899888773 2 1222233 2344444433322221 23 11
Q ss_pred cccchHHHHHHHHhCCCeEEEec
Q 017312 266 NKIGTYSLALCAKFHNILFYVAA 288 (373)
Q Consensus 266 nkiGT~~lA~~Ak~~~vPvyV~a 288 (373)
...-.-.++-+||+||+|++|=+
T Consensus 230 ~~~dl~~I~~la~~~g~~vivD~ 252 (454)
T TIGR00474 230 EEVSIAELVALGREHGLPVMEDL 252 (454)
T ss_pred CCCCHHHHHHHHHHcCCeEEEEC
Confidence 23445678899999999999954
No 75
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=47.40 E-value=92 Score=29.03 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=49.0
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCC-cchH-------------HHHHHHhhCCCCeEEEc--chHHHHHHHcCCCCEEEE
Q 017312 190 LGVIRALHSEGVLERAYCSETRPFN-QGSR-------------LTAFELVHDRIPATLIA--DSAAAALMKDGRVSAVIV 253 (373)
Q Consensus 190 l~~l~~a~~~g~~~~V~v~EsrP~~-qG~r-------------lta~~L~~~GI~vtlI~--Dsa~~~~m~~~~vd~Viv 253 (373)
.++=..|+++|-+.+|++....|.+ +|.| -+..++.+.|||+.+-. -+.+...++++.+=.|++
T Consensus 57 ~GLAlAA~rrG~~vev~~~~~~plfld~vr~~~kk~v~~~v~~~f~~~a~~~gv~~~~~~~~~~~l~~~l~~G~~~lvLI 136 (207)
T PF11814_consen 57 FGLALAAARRGFKVEVWVSTDGPLFLDSVRSEEKKEVMELVHEDFREEAEQAGVPVHYRPLSLADLRAALAAGAIVLVLI 136 (207)
T ss_pred HHHHHHHHHcCCceEEEECCCCCceeccCCCHHHHHHHHHHHHHHHHHHHHCCCceecCCCCHHHHHHHHHCCCEEEEEE
Confidence 3444567888999999999998875 3322 13446778999999854 466778887788777777
Q ss_pred cceeE
Q 017312 254 GADRV 258 (373)
Q Consensus 254 GAd~I 258 (373)
..-++
T Consensus 137 S~y~~ 141 (207)
T PF11814_consen 137 STYRM 141 (207)
T ss_pred eeccc
Confidence 55444
No 76
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=47.18 E-value=1.2e+02 Score=30.46 Aligned_cols=102 Identities=22% Similarity=0.140 Sum_probs=62.3
Q ss_pred CCcEEEEecCCCcccccccc-cHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEc-ch--HHHHHH
Q 017312 168 SKFSVLTHCNTGSLATAGYG-TALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA-DS--AAAALM 243 (373)
Q Consensus 168 ~~~~ILT~~~sgslat~g~~-tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~-Ds--a~~~~m 243 (373)
.+..|-.||-|. |-- .+..+++...+++...+|.++=+-|- |.++ +..+...++++.+.+ |. .+..++
T Consensus 49 ~~~~iW~Ha~s~-----Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~--~~~~-~~~~~~~~~~~~~~P~d~~~~~~~~l 120 (425)
T PRK05749 49 KGPLIWFHAVSV-----GETRAAIPLIRALRKRYPDLPILVTTMTPT--GSER-AQALFGDDVEHRYLPYDLPGAVRRFL 120 (425)
T ss_pred CCCeEEEEeCCH-----HHHHHHHHHHHHHHHhCCCCcEEEeCCCcc--HHHH-HHHhcCCCceEEEecCCcHHHHHHHH
Confidence 456799998652 211 23445667777777778877655433 4455 334545578888777 43 566677
Q ss_pred HcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEec
Q 017312 244 KDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (373)
Q Consensus 244 ~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (373)
++-+.|.|++.- +++ . ..+...|+..|+|+++..
T Consensus 121 ~~~~Pd~v~~~~------~~~----~-~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 121 RFWRPKLVIIME------TEL----W-PNLIAELKRRGIPLVLAN 154 (425)
T ss_pred HhhCCCEEEEEe------cch----h-HHHHHHHHHCCCCEEEEe
Confidence 778889886431 111 1 112345788999999864
No 77
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=46.80 E-value=2.1e+02 Score=25.30 Aligned_cols=126 Identities=16% Similarity=0.119 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcc-hHHHHHHHhhC
Q 017312 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQG-SRLTAFELVHD 227 (373)
Q Consensus 149 a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG-~rlta~~L~~~ 227 (373)
+.+.+++....++. ...+..|+..|-.|-=. |-.+.+-|.+++.|.+..|++....+.... .+.-...+.+.
T Consensus 8 Ag~~~a~~i~~~~~---~~~~~~v~il~G~GnNG----gDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF03853_consen 8 AGRAIAELIRKLFG---SPKGPRVLILCGPGNNG----GDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKM 80 (169)
T ss_dssp HHHHHHHHHHHHST---CCTT-EEEEEE-SSHHH----HHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc---ccCCCeEEEEECCCCCh----HHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhc
Confidence 34445444444451 11457888887554211 224455688888999988877755443332 22222346678
Q ss_pred CCCeEEE-cchHHHHHHHcCCCCEEEEcceeEecCCCeecccc-hHHHHHHHHhCCCeEEE
Q 017312 228 RIPATLI-ADSAAAALMKDGRVSAVIVGADRVAANGDTANKIG-TYSLALCAKFHNILFYV 286 (373)
Q Consensus 228 GI~vtlI-~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiG-T~~lA~~Ak~~~vPvyV 286 (373)
|+++... .+......+ ..+|.|| |+++-.|--=.--| ...+.-.+++++.|++.
T Consensus 81 g~~~~~~~~~~~~~~~~--~~~dlII---Dal~G~G~~~~l~~~~~~~i~~iN~~~~~viA 136 (169)
T PF03853_consen 81 GIKIIELDSDEDLSEAL--EPADLII---DALFGTGFSGPLRGPIAELIDWINASRAPVIA 136 (169)
T ss_dssp T-EEESSCCGSGGGHHG--SCESEEE---EES-STTGGSCGSTCHHHHHHHHHHHCSEEEE
T ss_pred CCcEeeccccchhhccc--ccccEEE---EecccCCCCCCcCHHHHHHHHHHhccCCcEEE
Confidence 8877643 344444555 5788886 67776663323333 33334456777777554
No 78
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=46.21 E-value=1.5e+02 Score=34.26 Aligned_cols=81 Identities=23% Similarity=0.270 Sum_probs=55.6
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEc---c--hHHHHHHHcCCCCEEEEcceeEecCCCe
Q 017312 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA---D--SAAAALMKDGRVSAVIVGADRVAANGDT 264 (373)
Q Consensus 190 l~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~---D--sa~~~~m~~~~vd~VivGAd~I~~nG~v 264 (373)
+.+.+..++ ..|++|.++ | ||+.|.+.||+|+.+. + ..+--+++++++|.||-=. ..|.-
T Consensus 953 ~~~~~~l~~--~g~~~~at~------g---ta~~l~~~gi~~~~~~~~~~~~~~~~~~i~~~~i~lvin~~----~~~~~ 1017 (1050)
T TIGR01369 953 LDLARKLAE--KGYKLYATE------G---TAKFLGEAGIKPELVLKVSEGRPNILDLIKNGEIELVINTT----SKGAG 1017 (1050)
T ss_pred HHHHHHHHH--CCCEEEEec------h---HHHHHHHCCCceEEEeecCCCCccHHHHHHcCCeEEEEECC----CCCcc
Confidence 334455543 357788776 3 6788999999998763 1 2355677889999997632 11222
Q ss_pred ecccchHHHHHHHHhCCCeEEE
Q 017312 265 ANKIGTYSLALCAKFHNILFYV 286 (373)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~vPvyV 286 (373)
.....|.+=.+|-.+|||++-
T Consensus 1018 -~~~~g~~iRr~Ai~~~ip~~t 1038 (1050)
T TIGR01369 1018 -TATDGYKIRREALDYGVPLIT 1038 (1050)
T ss_pred -cccccHHHHHHHHHcCCCEEe
Confidence 244568888999999999984
No 79
>PF06026 Rib_5-P_isom_A: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); InterPro: IPR004788 Ribose 5-phosphate isomerase, also known as phosphoriboisomerase, catalyses the reversible conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate, the first step in the non-oxidative branch of the pentose phosphate pathway []. This reaction enables ribose to be synthesized from sugars, as well as the recycling of sugars during the degradation of nucleotides. There are two unrelated types of ribose 5-phosphate isomerases: type A (RpiA) is the most common and is found in most organisms, while type B (RpiB) is restricted to specific eukaryotic and prokaryotic species. Escherichia coli produces both RpiA and RpiB (also known as AlsB), although RpiA accounts for 99% of total RPI enzymes []. This entry represents type A (RpiA) enzymes found in eukaryotes (plants, Metazoa and fungi), bacteria and archaea.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt, non-oxidative branch; PDB: 1M0S_B 3HHE_B 1LKZ_B 1KS2_A 1O8B_A 3UW1_A 3U7J_A 3L7O_A 1XTZ_A 1UJ6_A ....
Probab=46.20 E-value=39 Score=30.52 Aligned_cols=78 Identities=19% Similarity=0.139 Sum_probs=49.9
Q ss_pred HHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHH--HHHHHhCCCeEEEeccCccccCCC
Q 017312 220 TAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSL--ALCAKFHNILFYVAAPLTSIDLTL 297 (373)
Q Consensus 220 ta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~l--A~~Ak~~~vPvyV~a~~~k~~~~~ 297 (373)
|+..+.+.|||++-+.+- .++|..|=|||-|-.|..++ |-|...+ ==+......-|+++++..|+....
T Consensus 10 T~~~a~~~Gi~l~~~~~~--------~~iDl~iDGaDevd~~l~lI-KGgGgallrEKiva~~a~~~I~i~DesK~v~~L 80 (173)
T PF06026_consen 10 TELLARKLGIPLVDLDEV--------DRIDLAIDGADEVDPDLNLI-KGGGGALLREKIVASAAKRFIIIVDESKLVEKL 80 (173)
T ss_dssp HHHHHHHTT-EBE-GGGS--------SSEEEEEEE-SEEETTSEEE---TTS-HHHHHHHHHTEEEEEEEEEGGGBESSB
T ss_pred HHHHHHHcCCcEEccccC--------CcceEEEECchhhcCCCCEE-ECCCccchhhhhHHHhhceEEEEECCCcEeeEc
Confidence 455678899988766542 79999999999999998777 4443322 123334566788999999998765
Q ss_pred CCCCcccccc
Q 017312 298 SSGQEIVIEE 307 (373)
Q Consensus 298 ~~~~~i~ie~ 307 (373)
. ...+|+|-
T Consensus 81 g-~~plPvEV 89 (173)
T PF06026_consen 81 G-KFPLPVEV 89 (173)
T ss_dssp T-SS-EEEEE
T ss_pred C-CCceeEEE
Confidence 4 33455553
No 80
>CHL00194 ycf39 Ycf39; Provisional
Probab=45.50 E-value=1.1e+02 Score=29.38 Aligned_cols=90 Identities=17% Similarity=0.104 Sum_probs=51.0
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEE--cc-hHHHHHHHcCCCCEEEEcceeEecCCC---e
Q 017312 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--AD-SAAAALMKDGRVSAVIVGADRVAANGD---T 264 (373)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI--~D-sa~~~~m~~~~vd~VivGAd~I~~nG~---v 264 (373)
.+++.+.++|.. |.+.- |.. .+ +..|...|+.+... .| ..+...+ ..+|.|+--+.....+.. -
T Consensus 15 ~lv~~Ll~~g~~--V~~l~-R~~---~~--~~~l~~~~v~~v~~Dl~d~~~l~~al--~g~d~Vi~~~~~~~~~~~~~~~ 84 (317)
T CHL00194 15 QIVRQALDEGYQ--VRCLV-RNL---RK--ASFLKEWGAELVYGDLSLPETLPPSF--KGVTAIIDASTSRPSDLYNAKQ 84 (317)
T ss_pred HHHHHHHHCCCe--EEEEE-cCh---HH--hhhHhhcCCEEEECCCCCHHHHHHHH--CCCCEEEECCCCCCCCccchhh
Confidence 355667777754 44442 321 11 12344556655431 23 3455667 789988865432222211 1
Q ss_pred ecccchHHHHHHHHhCCCeEEEeccC
Q 017312 265 ANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
+|..|+..+.-+|++.|+.-+|...+
T Consensus 85 ~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 85 IDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 46678999999999999876665443
No 81
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=45.11 E-value=31 Score=28.59 Aligned_cols=66 Identities=15% Similarity=0.113 Sum_probs=42.5
Q ss_pred HHHHhhCCCCeEEEcch--HHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCc
Q 017312 221 AFELVHDRIPATLIADS--AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (373)
Q Consensus 221 a~~L~~~GI~vtlI~Ds--a~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (373)
+.+|.+.|..+..+.+. +...+....++..|++..| +.--....-..-.+-.+.+++||+++++..
T Consensus 10 ~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-----~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 10 AEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-----GEEEDEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp HHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-----HHHHHHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred HHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-----cccchhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 45788888888877644 4666666689999999988 111111112222345566899999998855
No 82
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=45.06 E-value=36 Score=27.96 Aligned_cols=88 Identities=22% Similarity=0.302 Sum_probs=49.6
Q ss_pred EEEEecCCCcccccccccHHHHHHH-HHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCC
Q 017312 171 SVLTHCNTGSLATAGYGTALGVIRA-LHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVS 249 (373)
Q Consensus 171 ~ILT~~~sgslat~g~~tal~~l~~-a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd 249 (373)
.||..++ |-=++.|-. ..+..+.-+||+.-..|..+. +.+ .+++..-.-..+..+.++.++|
T Consensus 2 kVLviGs---------GgREHAia~~l~~s~~v~~v~~aPGN~G~~~-------~~~-~~~~~~~d~~~l~~~a~~~~id 64 (100)
T PF02844_consen 2 KVLVIGS---------GGREHAIAWKLSQSPSVEEVYVAPGNPGTAE-------LGK-NVPIDITDPEELADFAKENKID 64 (100)
T ss_dssp EEEEEES---------SHHHHHHHHHHTTCTTEEEEEEEE--TTGGG-------TSE-EE-S-TT-HHHHHHHHHHTTES
T ss_pred EEEEECC---------CHHHHHHHHHHhcCCCCCEEEEeCCCHHHHh-------hce-ecCCCCCCHHHHHHHHHHcCCC
Confidence 5777753 322444543 344445678999877654321 111 1222111123456666789999
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHHhCCCeEE
Q 017312 250 AVIVGADRVAANGDTANKIGTYSLALCAKFHNILFY 285 (373)
Q Consensus 250 ~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvy 285 (373)
+||+|-+.-+.+| ++=.-+..|+|++
T Consensus 65 lvvvGPE~pL~~G----------l~D~l~~~gi~vf 90 (100)
T PF02844_consen 65 LVVVGPEAPLVAG----------LADALRAAGIPVF 90 (100)
T ss_dssp EEEESSHHHHHTT----------HHHHHHHTT-CEE
T ss_pred EEEECChHHHHHH----------HHHHHHHCCCcEE
Confidence 9999999999988 3444556777765
No 83
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=44.54 E-value=89 Score=36.07 Aligned_cols=64 Identities=22% Similarity=0.263 Sum_probs=47.3
Q ss_pred HHHHHhhCCCCeEEEcc-----hHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEecc
Q 017312 220 TAFELVHDRIPATLIAD-----SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (373)
Q Consensus 220 ta~~L~~~GI~vtlI~D-----sa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (373)
|++.|.+.||+|+.+.. ..+--+++++++|.||--.. |.- .....|.+=.+|-++|||++--..
T Consensus 972 T~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~idlvIn~~~-----~~~-~~~~g~~iRr~Av~~~ip~~T~~~ 1040 (1066)
T PRK05294 972 TAKFLREAGIPVELVNKVHEGRPHIVDLIKNGEIDLVINTPT-----GRQ-AIRDGFSIRRAALEYKVPYITTLA 1040 (1066)
T ss_pred HHHHHHHCCCeeEEEeeccCcCccHHHHHHcCCeEEEEECCC-----Ccc-cccccHHHHHHHHHcCCCEEecHH
Confidence 67788999999988763 34666778899999986543 321 234568888999999999995443
No 84
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=44.44 E-value=1e+02 Score=29.93 Aligned_cols=87 Identities=13% Similarity=0.088 Sum_probs=48.5
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchH-HHHHHHcCCCCEEEEcceeEecCCCeecc
Q 017312 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA-AAALMKDGRVSAVIVGADRVAANGDTANK 267 (373)
Q Consensus 189 al~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa-~~~~m~~~~vd~VivGAd~I~~nG~v~nk 267 (373)
++..+..+...| +|++. .|.+.+... .+...|+++..++|.. +-..+ .+.+.|++ ..-=-.-|.+...
T Consensus 76 ~i~~~~~~l~~g---~vl~~--~p~y~~~~~---~~~~~g~~~~~~~d~~~l~~~~--~~~~~v~i-~~p~NPtG~~~~~ 144 (330)
T TIGR01140 76 AIYLLPRLLAPG---RVLVL--APTYSEYAR---AWRAAGHEVVELPDLDRLPAAL--EELDVLVL-CNPNNPTGRLIPP 144 (330)
T ss_pred HHHHHHHHhCCC---eEEEe--CCCcHHHHH---HHHHcCCEEEEeCCHHHHHhhc--ccCCEEEE-eCCCCCCCCCCCH
Confidence 444444444333 45553 577765432 3667899999988532 33334 45555544 1111233444444
Q ss_pred cchHHHHHHHHhCCCeEEE
Q 017312 268 IGTYSLALCAKFHNILFYV 286 (373)
Q Consensus 268 iGT~~lA~~Ak~~~vPvyV 286 (373)
-.=..++-.|+.|++++++
T Consensus 145 ~~~~~l~~~a~~~~~~ii~ 163 (330)
T TIGR01140 145 ETLLALAARLRARGGWLVV 163 (330)
T ss_pred HHHHHHHHHhHhcCCEEEE
Confidence 4444567788899998876
No 85
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=44.25 E-value=2.3e+02 Score=28.99 Aligned_cols=143 Identities=11% Similarity=0.062 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHH-----HHH--HHHHCCC--eeE
Q 017312 134 AYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALG-----VIR--ALHSEGV--LER 204 (373)
Q Consensus 134 ~l~~~~~~~~~e~~~a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~-----~l~--~a~~~g~--~~~ 204 (373)
.++...+.|+++....+.+....+.+.+. + ..|=.+|++ +|.+.. ++. .-|.++. ..-
T Consensus 183 ~~~~~~~~Y~~~lm~p~~~~v~~~l~~~~-----~-l~i~~IaP~-------HG~i~~~~~~~i~~~Y~~W~~~~~~~~V 249 (388)
T COG0426 183 ELLPDMRKYYANLMAPNARLVLWALKKIK-----L-LKIEMIAPS-------HGPIWRGNPKEIVEAYRDWAEGQPKGKV 249 (388)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHhhhc-----c-cCccEEEcC-------CCceeeCCHHHHHHHHHHHHccCCcceE
Confidence 67888888888888888777777777776 3 334445543 444322 332 2233333 322
Q ss_pred EEEecCCCCCcc--hHHHHHHHhhCCCCeEEEcchH--HHHHHHc-CCCCEEEEcceeEecCCCeecccchHHHHHHHHh
Q 017312 205 AYCSETRPFNQG--SRLTAFELVHDRIPATLIADSA--AAALMKD-GRVSAVIVGADRVAANGDTANKIGTYSLALCAKF 279 (373)
Q Consensus 205 V~v~EsrP~~qG--~rlta~~L~~~GI~vtlI~Dsa--~~~~m~~-~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~ 279 (373)
+++-.|-=.+-+ ++-.+..|.+.|+.|.++-++. ...+++. .+++.+++|.-.+ |++..-++++..--+.+..
T Consensus 250 ~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vvGsPT~--~~~~~p~i~~~l~~v~~~~ 327 (388)
T COG0426 250 DLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVVGSPTI--NGGAHPPIQTALGYVLALA 327 (388)
T ss_pred EEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEEecCcc--cCCCCchHHHHHHHHHhcc
Confidence 333333323322 1223556788999988776544 4444421 5789999999887 6789999999999988887
Q ss_pred CCCeEEEeccCc
Q 017312 280 HNILFYVAAPLT 291 (373)
Q Consensus 280 ~~vPvyV~a~~~ 291 (373)
+..-..++.++|
T Consensus 328 ~~~k~~~vfgS~ 339 (388)
T COG0426 328 PKNKLAGVFGSY 339 (388)
T ss_pred CcCceEEEEecc
Confidence 655445555555
No 86
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=44.19 E-value=69 Score=27.90 Aligned_cols=69 Identities=20% Similarity=0.163 Sum_probs=41.8
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHh
Q 017312 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF 279 (373)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~ 279 (373)
+...++--.+.+|...|.. .|.-|++.|+++.++. +|.+.-+|....+--...++-.|++
T Consensus 23 ~~~~~~~~~~~~~GG~~~n-~a~~l~~LG~~~~~~~-------------------~~~v~i~~~~~~~~~~~~~~~~~~~ 82 (196)
T cd00287 23 GGLVRPGDTEERAGGGAAN-VAVALARLGVSVTLVG-------------------ADAVVISGLSPAPEAVLDALEEARR 82 (196)
T ss_pred CCeEEeceeeecCCCcHHH-HHHHHHHCCCcEEEEE-------------------ccEEEEecccCcHHHHHHHHHHHHH
Confidence 3333333445566665655 4678999999999888 4555554433221223445557888
Q ss_pred CCCeEEEec
Q 017312 280 HNILFYVAA 288 (373)
Q Consensus 280 ~~vPvyV~a 288 (373)
+++|+++=.
T Consensus 83 ~~~~v~~D~ 91 (196)
T cd00287 83 RGVPVVLDP 91 (196)
T ss_pred cCCeEEEeC
Confidence 999987643
No 87
>PRK02947 hypothetical protein; Provisional
Probab=43.99 E-value=2.8e+02 Score=26.10 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=24.8
Q ss_pred HHHHHhhCCCCeEEEcchHH-----------HHHHHcCCCCEEEEc
Q 017312 220 TAFELVHDRIPATLIADSAA-----------AALMKDGRVSAVIVG 254 (373)
Q Consensus 220 ta~~L~~~GI~vtlI~Dsa~-----------~~~m~~~~vd~VivG 254 (373)
.++.+.+.|+++..|+++.- ..+. ..+|.||.-
T Consensus 125 ~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~--~~ad~~l~~ 168 (246)
T PRK02947 125 MALEAKERGAKVIAVTSLAYSASVASRHSSGKRLA--EVADVVLDN 168 (246)
T ss_pred HHHHHHHCCCEEEEEcCCcccccccccCCCcCchh--HhCCEEEEc
Confidence 36678899999999999763 4555 678888743
No 88
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=43.43 E-value=2.5e+02 Score=28.95 Aligned_cols=90 Identities=18% Similarity=0.156 Sum_probs=46.0
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchH-HHHHHHhhCCCCeEEEcch-HHHHHHH--cCCCCEEEEcceeEec-CCCe
Q 017312 190 LGVIRALHSEGVLERAYCSETRPFNQGSR-LTAFELVHDRIPATLIADS-AAAALMK--DGRVSAVIVGADRVAA-NGDT 264 (373)
Q Consensus 190 l~~l~~a~~~g~~~~V~v~EsrP~~qG~r-lta~~L~~~GI~vtlI~Ds-a~~~~m~--~~~vd~VivGAd~I~~-nG~v 264 (373)
...|....+.|. +|++..+ .+.|.. +..+.|.+.|+.++++.|. ....+.+ +++. ++|+ .+.+.. .|.+
T Consensus 98 ~~al~all~~Gd--~Vv~~~~--~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai~~~t-klV~-ie~~sNp~G~v 171 (436)
T PRK07812 98 TFAILNLAGAGD--HIVSSPR--LYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVRPNT-KAFF-AETISNPQIDV 171 (436)
T ss_pred HHHHHHHhCCCC--EEEEeCC--cchHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhCCCCC-eEEE-EECCCCCCCee
Confidence 334554444454 5666653 333432 3333467789999988531 1222221 1233 3332 222221 2333
Q ss_pred ecccchHHHHHHHHhCCCeEEEec
Q 017312 265 ANKIGTYSLALCAKFHNILFYVAA 288 (373)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~vPvyV~a 288 (373)
.. + -.++-+||++|++++|=+
T Consensus 172 ~D-l--~~I~~la~~~gi~liVD~ 192 (436)
T PRK07812 172 LD-I--PGVAEVAHEAGVPLIVDN 192 (436)
T ss_pred cC-H--HHHHHHHHHcCCEEEEEC
Confidence 22 1 358889999999998843
No 89
>PLN02735 carbamoyl-phosphate synthase
Probab=43.22 E-value=1.1e+02 Score=35.51 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=45.6
Q ss_pred HHHHHhhCCCCeEEEc---c--hHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 220 TAFELVHDRIPATLIA---D--SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 220 ta~~L~~~GI~vtlI~---D--sa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
|++.|.+.||+|+.+. + ..+--+++++++|.||-- ++|.-.-..-.|.+=..|-.+|||++--
T Consensus 1007 Ta~~L~~~Gi~~~~v~~~~~~~~~~~~~i~~~~i~~vin~-----~~~~~~~~~d~~~iRr~a~~~~ip~~t~ 1074 (1102)
T PLN02735 1007 TAHFLELAGIPVERVLKLHEGRPHAGDMLANGQIQLMVIT-----SSGDALDQKDGRQLRRMALAYKVPIITT 1074 (1102)
T ss_pred HHHHHHHCCCceEEEeeccCCCccHHHHHHcCCeEEEEEC-----CCCccccccccHHHHHHHHHcCCCEEec
Confidence 6778999999988763 2 235566788999999853 3444321345688999999999999843
No 90
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=42.90 E-value=22 Score=29.89 Aligned_cols=93 Identities=19% Similarity=0.107 Sum_probs=47.1
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEE-----cchHHHHHHHcCCCCEEEEcceeEecCCC
Q 017312 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI-----ADSAAAALMKDGRVSAVIVGADRVAANGD 263 (373)
Q Consensus 189 al~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI-----~Dsa~~~~m~~~~vd~VivGAd~I~~nG~ 263 (373)
+..+++.+.+.|..++|+++++. .++...+. ..+-++..- .+....++-..+..|.++|..-..-.=+.
T Consensus 16 ~~~~l~~L~~~g~~v~vv~S~~A-----~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~D~~vVaPaT~NtlaK 89 (129)
T PF02441_consen 16 APDLLRRLKRAGWEVRVVLSPSA-----ERFVTPEG-LTGEPVYTDWDTWDRGDPAEHIELSRWADAMVVAPATANTLAK 89 (129)
T ss_dssp HHHHHHHHHTTTSEEEEEESHHH-----HHHSHHHG-HCCSCEECTHCTCSTTTTTCHHHHHHTESEEEEEEEEHHHHHH
T ss_pred HHHHHHHHhhCCCEEEEEECCcH-----HHHhhhhc-cccchhhhccccCCCCCCcCcccccccCCEEEEcccCHHHHHH
Confidence 66788888888999999988863 34333333 222232221 11111111112679999886533211111
Q ss_pred eecccchHHHHHHHHhC---CCeEEEe
Q 017312 264 TANKIGTYSLALCAKFH---NILFYVA 287 (373)
Q Consensus 264 v~nkiGT~~lA~~Ak~~---~vPvyV~ 287 (373)
++|=+.--.+..++... ++|++++
T Consensus 90 iA~GiaD~l~~~~~~~~l~~~~pvvi~ 116 (129)
T PF02441_consen 90 IANGIADNLLTRVALAALKEGKPVVIA 116 (129)
T ss_dssp HHTT--SSHHHHHHHHHHHTTCGEEEE
T ss_pred HHhCCcchHHHHHHHHHccCCCCeEEE
Confidence 22222222344444444 9998865
No 91
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=42.53 E-value=2e+02 Score=28.54 Aligned_cols=88 Identities=23% Similarity=0.177 Sum_probs=45.9
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchH-HHHHHHhhCCCCeEEEcch---HHHHHHHcCCCCEEEEcceeEec-CCC
Q 017312 189 ALGVIRALHSEGVLERAYCSETRPFNQGSR-LTAFELVHDRIPATLIADS---AAAALMKDGRVSAVIVGADRVAA-NGD 263 (373)
Q Consensus 189 al~~l~~a~~~g~~~~V~v~EsrP~~qG~r-lta~~L~~~GI~vtlI~Ds---a~~~~m~~~~vd~VivGAd~I~~-nG~ 263 (373)
...++..+.+.|. +|++.. |.+.+.. +....+...|+.+.++.-. .+...++ ++...|++ +.+.. .|.
T Consensus 68 i~~~l~~l~~~gd--~Vl~~~--~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~-~~~~~v~~--e~~~np~g~ 140 (369)
T cd00614 68 ISTVLLALLKAGD--HVVASD--DLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIK-PETKLVYV--ESPTNPTLK 140 (369)
T ss_pred HHHHHHHHcCCCC--EEEECC--CCcchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhcC-CCCeEEEE--ECCCCCCCe
Confidence 3445555444443 455443 5554432 2222355789988887533 2333331 34445543 23322 233
Q ss_pred eecccchHHHHHHHHhCCCeEEE
Q 017312 264 TANKIGTYSLALCAKFHNILFYV 286 (373)
Q Consensus 264 v~nkiGT~~lA~~Ak~~~vPvyV 286 (373)
+.. --.++-+||+||++++|
T Consensus 141 ~~d---l~~i~~la~~~g~~liv 160 (369)
T cd00614 141 VVD---IEAIAELAHEHGALLVV 160 (369)
T ss_pred ecC---HHHHHHHHHHcCCEEEE
Confidence 322 23577889999999987
No 92
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=42.36 E-value=2.7e+02 Score=28.79 Aligned_cols=52 Identities=13% Similarity=-0.006 Sum_probs=39.0
Q ss_pred CCCCEEEEcce-eEecCCCeecccchHHHHHHHHhCCCeEEEeccCccccCCCC
Q 017312 246 GRVSAVIVGAD-RVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLS 298 (373)
Q Consensus 246 ~~vd~VivGAd-~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~~~~~ 298 (373)
-.+|..|.||+ +|+.+|++++..|..+.-+++ ..-.-++++.+..|+.+...
T Consensus 180 ~~advgit~an~aiAetGtlv~~~~~gn~R~~~-~lP~~hI~vvg~~kivp~~~ 232 (432)
T TIGR00273 180 LSADIGISGCNFAIAETGSIFLVENEGNGRLST-TLPKTHIAVMGIEKIVPTFD 232 (432)
T ss_pred hcCCEEEeccchHhhcCceEEEecCCCCchhhc-cCCCeEEEEEEHHHccCCHH
Confidence 48999999999 999999999988887744443 33344556778888876543
No 93
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=42.29 E-value=20 Score=27.76 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=24.6
Q ss_pred CCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEecc
Q 017312 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (373)
Q Consensus 246 ~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (373)
.++--+ |+..|+. |.-.|++|+++|||.++-++
T Consensus 29 ~~~~Gi------v~~~Gg~-----~SH~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 29 QRVAGI------VTEEGGP-----TSHAAILARELGIPAIVGVG 61 (80)
T ss_dssp TTSSEE------EESSSST-----TSHHHHHHHHTT-EEEESTT
T ss_pred hheEEE------EEEcCCc-----cchHHHHHHHcCCCEEEeec
Confidence 666666 4566654 46789999999999999876
No 94
>PRK12320 hypothetical protein; Provisional
Probab=42.11 E-value=91 Score=34.36 Aligned_cols=53 Identities=17% Similarity=0.071 Sum_probs=36.6
Q ss_pred chHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccC
Q 017312 236 DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 236 Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
|.....++ .++|.|+--|-....+..-.|-.||.+++-+|+++|+.++.+...
T Consensus 51 d~~l~~al--~~~D~VIHLAa~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~ 103 (699)
T PRK12320 51 NPVLQELA--GEADAVIHLAPVDTSAPGGVGITGLAHVANAAARAGARLLFVSQA 103 (699)
T ss_pred CHHHHHHh--cCCCEEEEcCccCccchhhHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 44444556 678988877643221222368899999999999999998776543
No 95
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=41.75 E-value=63 Score=31.49 Aligned_cols=63 Identities=11% Similarity=0.117 Sum_probs=38.2
Q ss_pred cccHHHHHHHHHHCCC-eeEEEEecC-CCCCcchHHHHHHHhhCCCCeEEEc---------chHHHHHHHcCCCCEEEEc
Q 017312 186 YGTALGVIRALHSEGV-LERAYCSET-RPFNQGSRLTAFELVHDRIPATLIA---------DSAAAALMKDGRVSAVIVG 254 (373)
Q Consensus 186 ~~tal~~l~~a~~~g~-~~~V~v~Es-rP~~qG~rlta~~L~~~GI~vtlI~---------Dsa~~~~m~~~~vd~VivG 254 (373)
.|+-+..|..+.+.|. ..+|.++=| +|..++ + ..+.|||+.+++ |..+...+++.++|.+++.
T Consensus 99 ~g~nl~al~~~~~~~~~~~~i~~visn~~~~~~--l----A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivla 172 (286)
T PRK13011 99 FDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEP--L----AAWHGIPFHHFPITPDTKPQQEAQVLDVVEESGAELVVLA 172 (286)
T ss_pred CcccHHHHHHHHHcCCCCcEEEEEEECCccHHH--H----HHHhCCCEEEeCCCcCchhhhHHHHHHHHHHhCcCEEEEe
Confidence 4666666666666665 455544433 664322 1 456799998863 2334555767789987664
No 96
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=41.66 E-value=1.2e+02 Score=35.15 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=44.1
Q ss_pred HHHHHhhCCCCeEEEcc-----hHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEE
Q 017312 220 TAFELVHDRIPATLIAD-----SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYV 286 (373)
Q Consensus 220 ta~~L~~~GI~vtlI~D-----sa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV 286 (373)
|+..|.+.||+|+.+.- ..+--+++++++|.||--. .|.-. ..-.|.+=-+|-.++||++-
T Consensus 972 t~~~l~~~gi~~~~v~~~~~~~~~~~~~~~~~~~~~vin~~-----~~~~~-~~~~~~irr~a~~~~ip~~t 1037 (1068)
T PRK12815 972 TANWLAEEGITTGVVEKVQEGSPSLLERIKQHRIVLVVNTS-----LSDSA-SEDAIKIRDEALSTHIPVFT 1037 (1068)
T ss_pred HHHHHHhCCCeEEEEeeccCCCccHHHHHHcCCeEEEEECC-----CCccc-ccccHHHHHHHHHcCCCEEe
Confidence 67889999999887532 2245677889999997632 23222 23467888899999999984
No 97
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=41.06 E-value=66 Score=29.51 Aligned_cols=75 Identities=15% Similarity=0.091 Sum_probs=49.1
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcC-
Q 017312 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDG- 246 (373)
Q Consensus 168 ~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~- 246 (373)
+|+.++..+- |.|++ .+..| ..+..-+||..|..|.. .+++.+.+.+.|++-..+.-..+..++..-
T Consensus 34 ~g~~l~DIGa-------GtGsi--~iE~a-~~~p~~~v~AIe~~~~a--~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~ 101 (187)
T COG2242 34 PGDRLWDIGA-------GTGSI--TIEWA-LAGPSGRVIAIERDEEA--LELIERNAARFGVDNLEVVEGDAPEALPDLP 101 (187)
T ss_pred CCCEEEEeCC-------CccHH--HHHHH-HhCCCceEEEEecCHHH--HHHHHHHHHHhCCCcEEEEeccchHhhcCCC
Confidence 7889988742 22332 12333 45788899999988764 467788899999986666666666666322
Q ss_pred CCCEEEEc
Q 017312 247 RVSAVIVG 254 (373)
Q Consensus 247 ~vd~VivG 254 (373)
+.|.+++|
T Consensus 102 ~~daiFIG 109 (187)
T COG2242 102 SPDAIFIG 109 (187)
T ss_pred CCCEEEEC
Confidence 45666555
No 98
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.
Probab=40.72 E-value=2.1e+02 Score=26.75 Aligned_cols=98 Identities=16% Similarity=0.145 Sum_probs=56.3
Q ss_pred HHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCC-CeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEc
Q 017312 157 GASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEG-VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA 235 (373)
Q Consensus 157 g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g-~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~ 235 (373)
++++|+ ||++|..-+.. +++....++++..++| ++++++-.-......|.. .|...
T Consensus 12 Av~~I~-----DG~ti~~gGf~------~~~~P~ali~~l~r~~~~~Ltlv~~~~g~~~~g~~----~L~~~-------- 68 (222)
T TIGR02429 12 AVSVIP-----DGATIMIGGFG------TAGQPFELIDALIDTGAKDLTIVSNNAGNGEIGLA----ALLKA-------- 68 (222)
T ss_pred HHhhCC-----CCCEEEECCcC------CccCcHHHHHHHHhcCCCCcEEEecCCCCCCccHH----HHHhC--------
Confidence 455677 99999876543 2356677777777776 457877643321112221 23333
Q ss_pred chHHHHHHHcCCCCEEEEcc---------eeEecCCCe---ecccchHHHHHHHHhCCCeEEEe
Q 017312 236 DSAAAALMKDGRVSAVIVGA---------DRVAANGDT---ANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 236 Dsa~~~~m~~~~vd~VivGA---------d~I~~nG~v---~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
+.|.+++.|- .+.+.+|.+ .-.-||..-.+-|-..|+|++..
T Consensus 69 ----------G~Vkr~i~s~~~~~~~~~~~~~~~~g~ie~~~~p~g~l~~~lrA~a~G~P~~~t 122 (222)
T TIGR02429 69 ----------GQVRKLICSFPRQSDSYVFDELYRAGKIELELVPQGTLAERIRAAGAGLGAFFT 122 (222)
T ss_pred ----------CCEeEEEccccCCCCCHHHHHHHHcCCeEEEECCHHHHHHHHHHHHCCCCceee
Confidence 4444444431 011123322 23678999999999999998864
No 99
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=40.59 E-value=2.1e+02 Score=29.43 Aligned_cols=119 Identities=19% Similarity=0.178 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHH-HHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhC
Q 017312 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGV-IRALHSEGVLERAYCSETRPFNQGSRLTAFELVHD 227 (373)
Q Consensus 149 a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~-l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~ 227 (373)
++++++++..+-+..++. .+|++||-+- +-++.+ |....+.|.+ ++=-||.+-=... .-.-.
T Consensus 108 AR~AVAeYl~~~l~~kl~-a~DV~ltsGC---------~qAIe~~i~~LA~p~aN----ILlPrPGfp~Y~~---~a~~~ 170 (447)
T KOG0259|consen 108 ARRAVAEYLNRDLPNKLT-ADDVVLTSGC---------SQAIELAISSLANPGAN----ILLPRPGFPLYDT---RAIYS 170 (447)
T ss_pred HHHHHHHHhhcCCCCccC-cCceEEeccc---------hHHHHHHHHHhcCCCCc----eecCCCCCchHHH---hhhhc
Confidence 556666664333332221 5689999532 345554 4444444444 3346787642211 12345
Q ss_pred CCCeEEE----------cchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEE
Q 017312 228 RIPATLI----------ADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYV 286 (373)
Q Consensus 228 GI~vtlI----------~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV 286 (373)
|+.|.+. --..+-++.-+..+-.||+--. -++|.|+.+-=--.+|-.||.+|+|++.
T Consensus 171 ~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~--NPcGnVys~~HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 171 GLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPN--NPCGNVYSEDHLKKIAETAKKLGIMVIA 237 (447)
T ss_pred CceeEeecccCcccceechHHHHHhhccCeeEEEEeCCC--CCCcccccHHHHHHHHHHHHHhCCeEEe
Confidence 7776653 2345566664444444444332 2578888888888999999999999874
No 100
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=40.55 E-value=62 Score=25.68 Aligned_cols=44 Identities=5% Similarity=0.016 Sum_probs=29.3
Q ss_pred HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 241 ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 241 ~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
-+.++.++|.|++|+..- |..-...-+...--++++..+||+|+
T Consensus 96 ~~~~~~~~dliv~G~~~~---~~~~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 96 EFAEEHNADLIVMGSRGR---SGLERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHHHTTCSEEEEESSST---TSTTTSSSHHHHHHHHHHTSSEEEEE
T ss_pred hccccccceeEEEeccCC---CCccCCCcCCHHHHHHHcCCCCEEEe
Confidence 344568999999999883 22222233444455677888999986
No 101
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=39.30 E-value=1.6e+02 Score=26.91 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=39.1
Q ss_pred cccHHH-HHHHHHHCCCeeEEEE-ecCCCCCcchHHHHHHHhhCCCCeEEEc----------chHHHHHHHcCCCCEEEE
Q 017312 186 YGTALG-VIRALHSEGVLERAYC-SETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVIV 253 (373)
Q Consensus 186 ~~tal~-~l~~a~~~g~~~~V~v-~EsrP~~qG~rlta~~L~~~GI~vtlI~----------Dsa~~~~m~~~~vd~Viv 253 (373)
.|+.+. ++...++.+....|.+ .-.+|...+ .....+.|||+..+. |..+...++..++|.+++
T Consensus 11 ~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~----~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~ 86 (200)
T PRK05647 11 NGSNLQAIIDACAAGQLPAEIVAVISDRPDAYG----LERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQPDLVVL 86 (200)
T ss_pred CChhHHHHHHHHHcCCCCcEEEEEEecCccchH----HHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCcCEEEh
Confidence 355544 4444444433444443 233344332 223567899998866 334555677788998877
Q ss_pred -cceeEec
Q 017312 254 -GADRVAA 260 (373)
Q Consensus 254 -GAd~I~~ 260 (373)
|-..++.
T Consensus 87 ~~~~~ii~ 94 (200)
T PRK05647 87 AGFMRILG 94 (200)
T ss_pred HHhhhhCC
Confidence 4445554
No 102
>PRK09191 two-component response regulator; Provisional
Probab=39.24 E-value=2.3e+02 Score=25.92 Aligned_cols=95 Identities=17% Similarity=0.089 Sum_probs=53.7
Q ss_pred ccHHHHHHHHHH---CCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEE-EcchH-HHHHHHcCCCCEEEEcceeEecC
Q 017312 187 GTALGVIRALHS---EGVLERAYCSETRPFNQGSRLTAFELVHDRIPATL-IADSA-AAALMKDGRVSAVIVGADRVAAN 261 (373)
Q Consensus 187 ~tal~~l~~a~~---~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtl-I~Dsa-~~~~m~~~~vd~VivGAd~I~~n 261 (373)
+||..-+..|.+ .....+|++++..|.... .....|...|+.+.. ..+.. +-..+.+...|.|++..+ ..+
T Consensus 119 ~tV~~~l~ra~~~l~~~~~~~~liidd~~~~~~--~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~~~dlvi~d~~--~~~ 194 (261)
T PRK09191 119 AEAEALLDDARAEIARQVATRVLIIEDEPIIAM--DLEQLVESLGHRVTGIARTRAEAVALAKKTRPGLILADIQ--LAD 194 (261)
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEcCcHHHHH--HHHHHHhcCCCEEEEEECCHHHHHHHHhccCCCEEEEecC--CCC
Confidence 566655544443 234556777777665532 224567788888774 43323 223344567899988764 222
Q ss_pred CCeecccchHHHHHHHHhCCCeEEEecc
Q 017312 262 GDTANKIGTYSLALCAKFHNILFYVAAP 289 (373)
Q Consensus 262 G~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (373)
| .-|.-.+..+.+..++|++++++
T Consensus 195 ~----~~g~e~l~~l~~~~~~pii~ls~ 218 (261)
T PRK09191 195 G----SSGIDAVNDILKTFDVPVIFITA 218 (261)
T ss_pred C----CCHHHHHHHHHHhCCCCEEEEeC
Confidence 2 11333333444444899999865
No 103
>PRK07582 cystathionine gamma-lyase; Validated
Probab=39.23 E-value=1.2e+02 Score=30.11 Aligned_cols=72 Identities=17% Similarity=0.028 Sum_probs=42.6
Q ss_pred eEEEEecCCCCCcchHHHHH-HHhhCCCCeEEEcchHHH-HHHHcCCCCEEEEcceeEecCCCeecccc----hHHHHHH
Q 017312 203 ERAYCSETRPFNQGSRLTAF-ELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIG----TYSLALC 276 (373)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~-~L~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~I~~nG~v~nkiG----T~~lA~~ 276 (373)
-+|++.+ |.+.+.+..++ .|...|+++.++....-. ..+ ++.+.|++- . .-|..| --.++-+
T Consensus 90 d~Vl~~~--~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~~~~--~~t~lV~le--~------p~NPtg~v~di~~I~~~ 157 (366)
T PRK07582 90 DTVVVPA--DGYYQVRALAREYLAPLGVTVREAPTAGMAEAAL--AGADLVLAE--T------PSNPGLDVCDLAALAAA 157 (366)
T ss_pred CEEEEeC--CCcHhHHHHHHHHHhcCeEEEEEECCCChHHHhc--cCceEEEEE--C------CCCCCCCccCHHHHHHH
Confidence 3566653 55555443333 356789999988744222 333 566666652 1 223333 3567888
Q ss_pred HHhCCCeEEE
Q 017312 277 AKFHNILFYV 286 (373)
Q Consensus 277 Ak~~~vPvyV 286 (373)
||.+|++++|
T Consensus 158 a~~~g~~lvV 167 (366)
T PRK07582 158 AHAAGALLVV 167 (366)
T ss_pred HHHcCCEEEE
Confidence 9999998876
No 104
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=38.71 E-value=2.3e+02 Score=23.46 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=37.3
Q ss_pred hhCCCCeEEEc--c-hH---HHHHHHcCCCCEEEEcceeEecCCCeecc-cchHHHHHHHHhCC--CeEEEec
Q 017312 225 VHDRIPATLIA--D-SA---AAALMKDGRVSAVIVGADRVAANGDTANK-IGTYSLALCAKFHN--ILFYVAA 288 (373)
Q Consensus 225 ~~~GI~vtlI~--D-sa---~~~~m~~~~vd~VivGAd~I~~nG~v~nk-iGT~~lA~~Ak~~~--vPvyV~a 288 (373)
...|+++..+. . +. +-.+.++.++|.+++|+..- |.+.-. .|+.--..+.++-. +||+|+.
T Consensus 75 ~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~---~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~ 144 (146)
T cd01989 75 SRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSD---NHFSMKFKKSDVASSVLKEAPDFCTVYVVS 144 (146)
T ss_pred hhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCC---CceeecccCCchhHHHHhcCCCCceEEEEe
Confidence 34677654333 2 32 23334568899999999865 333322 35444455678888 9999974
No 105
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=38.45 E-value=61 Score=30.26 Aligned_cols=87 Identities=23% Similarity=0.200 Sum_probs=55.2
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCC-CeEEEc-chHHHHHHHc
Q 017312 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI-PATLIA-DSAAAALMKD 245 (373)
Q Consensus 168 ~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI-~vtlI~-Dsa~~~~m~~ 245 (373)
.++.||=.+ ||| ||-+|+ |-.. .+ +|+-+|.-+-+.- .+.+.|...|+ +|+++. |...+|- ..
T Consensus 72 ~g~~VLEIG-tGs----GY~aAv--la~l--~~---~V~siEr~~~L~~--~A~~~L~~lg~~nV~v~~gDG~~G~~-~~ 136 (209)
T COG2518 72 PGDRVLEIG-TGS----GYQAAV--LARL--VG---RVVSIERIEELAE--QARRNLETLGYENVTVRHGDGSKGWP-EE 136 (209)
T ss_pred CCCeEEEEC-CCc----hHHHHH--HHHH--hC---eEEEEEEcHHHHH--HHHHHHHHcCCCceEEEECCcccCCC-CC
Confidence 789999876 343 777653 3222 23 9999998766532 22335899999 677666 5555553 34
Q ss_pred CCCCEEEEccee----------EecCCCeecccc
Q 017312 246 GRVSAVIVGADR----------VAANGDTANKIG 269 (373)
Q Consensus 246 ~~vd~VivGAd~----------I~~nG~v~nkiG 269 (373)
...|.+++.|-+ .-.+|-++-.+|
T Consensus 137 aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCCHHHHHhcccCCEEEEEEc
Confidence 678998887632 334555666666
No 106
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=38.20 E-value=2.3e+02 Score=27.91 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=66.2
Q ss_pred HHHHHHHhhcc----cCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhh------ccCCHHHHHHHHH
Q 017312 67 LSLAVEVFNLN----AFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAA------TASEANSVFQAYI 136 (373)
Q Consensus 67 ~~l~~~~~~~~----~~~~~~~el~~~l~~~~~~L~~~RPtav~l~nai~~~~~~i~~~~~------~~~~~~e~~~~l~ 136 (373)
++++.+++.|+ -+.+.+.|-.+.|+.....+..+.+..-++..++++.++..++..+ +-.++.....+..
T Consensus 77 LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~ 156 (300)
T COG0031 77 LAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYE 156 (300)
T ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHh
Confidence 34444455542 2345667788888888888887777555688898888777765521 1111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecC
Q 017312 137 EAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSET 210 (373)
Q Consensus 137 ~~~~~~~~e~~~a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~Es 210 (373)
..+.+ |.++....-|.+..-+-|| ||.-++-+..+++...++++.+|.
T Consensus 157 tT~~E-------------------I~~~~~g~~d~fVagvGTG-------GTitGvar~Lk~~~p~i~iv~vdP 204 (300)
T COG0031 157 TTGPE-------------------IWQQTDGKVDAFVAGVGTG-------GTITGVARYLKERNPNVRIVAVDP 204 (300)
T ss_pred hhHHH-------------------HHHHhCCCCCEEEEeCCcc-------hhHHHHHHHHHhhCCCcEEEEECC
Confidence 11111 1111100114444443333 678888888888888899999874
No 107
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=37.60 E-value=92 Score=24.14 Aligned_cols=79 Identities=15% Similarity=0.100 Sum_probs=50.2
Q ss_pred EEEecCCCCCcchHHHHHHHhhCCC-CeEEEcchH-HHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHh-CC
Q 017312 205 AYCSETRPFNQGSRLTAFELVHDRI-PATLIADSA-AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF-HN 281 (373)
Q Consensus 205 V~v~EsrP~~qG~rlta~~L~~~GI-~vtlI~Dsa-~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~-~~ 281 (373)
|.++|..|... ++..+.|...|+ .|+...+.. +-..+++...|.+++..+ .-..-|-..+..+.+. ++
T Consensus 1 Ilivd~~~~~~--~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~-------~~~~~~~~~~~~i~~~~~~ 71 (112)
T PF00072_consen 1 ILIVDDDPEIR--ELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLE-------LPDGDGLELLEQIRQINPS 71 (112)
T ss_dssp EEEEESSHHHH--HHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESS-------SSSSBHHHHHHHHHHHTTT
T ss_pred cEEEECCHHHH--HHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEee-------ecccccccccccccccccc
Confidence 45666666654 234556788999 888777655 344567788888887742 2223455555555444 48
Q ss_pred CeEEEeccCcc
Q 017312 282 ILFYVAAPLTS 292 (373)
Q Consensus 282 vPvyV~a~~~k 292 (373)
+|+++++...+
T Consensus 72 ~~ii~~t~~~~ 82 (112)
T PF00072_consen 72 IPIIVVTDEDD 82 (112)
T ss_dssp SEEEEEESSTS
T ss_pred ccEEEecCCCC
Confidence 99999875443
No 108
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=37.53 E-value=73 Score=32.70 Aligned_cols=78 Identities=18% Similarity=0.232 Sum_probs=45.2
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhh-CCCCeEEEcchHHHHHHHcCCC
Q 017312 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH-DRIPATLIADSAAAALMKDGRV 248 (373)
Q Consensus 170 ~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~-~GI~vtlI~Dsa~~~~m~~~~v 248 (373)
..||..++. +.-..+...+++.+..-.||+ -|.+.|. + .+.. ..+++...--.++..+.++.++
T Consensus 5 ~kvLviG~g--------~rehal~~~~~~~~~~~~~~~---~pgn~g~---~-~~~~~~~~~~~~~d~~~l~~~a~~~~i 69 (426)
T PRK13789 5 LKVLLIGSG--------GRESAIAFALRKSNLLSELKV---FPGNGGF---P-DDELLPADSFSILDKSSVQSFLKSNPF 69 (426)
T ss_pred cEEEEECCC--------HHHHHHHHHHHhCCCCCEEEE---ECCchHH---h-ccccccccCcCcCCHHHHHHHHHHcCC
Confidence 578888754 233445566677776678888 4555552 1 1111 1122222233345556677889
Q ss_pred CEEEEcceeEecCC
Q 017312 249 SAVIVGADRVAANG 262 (373)
Q Consensus 249 d~VivGAd~I~~nG 262 (373)
|.|++|.+..+..|
T Consensus 70 D~Vv~g~E~~l~~g 83 (426)
T PRK13789 70 DLIVVGPEDPLVAG 83 (426)
T ss_pred CEEEECCchHHHHH
Confidence 99999987765443
No 109
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=37.52 E-value=25 Score=33.84 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=22.0
Q ss_pred CCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEecc
Q 017312 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (373)
Q Consensus 246 ~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (373)
+++|.+++..|....+. ...+...+.++++|+|...+
T Consensus 183 ~~~da~~~~~~~~~~~~-------~~~i~~~~~~~~iPv~~~~~ 219 (294)
T PF04392_consen 183 EKVDALYLLPDNLVDSN-------FEAILQLANEAKIPVFGSSD 219 (294)
T ss_dssp TT-SEEEE-S-HHHHHT-------HHHHHHHCCCTT--EEESSH
T ss_pred ccCCEEEEECCcchHhH-------HHHHHHHHHhcCCCEEECCH
Confidence 78899988876654322 22267788999999998654
No 110
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=37.41 E-value=34 Score=30.47 Aligned_cols=25 Identities=44% Similarity=0.848 Sum_probs=18.7
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHH
Q 017312 169 KFSVLTHCNTGSLATAGYGTALGVIRAL 196 (373)
Q Consensus 169 ~~~ILT~~~sgslat~g~~tal~~l~~a 196 (373)
.--||.||+.|+-=| |+|.+++|..
T Consensus 91 n~PvLiHC~~G~~rT---G~vvg~lRk~ 115 (164)
T PF03162_consen 91 NYPVLIHCNHGKDRT---GLVVGCLRKL 115 (164)
T ss_dssp G-SEEEE-SSSSSHH---HHHHHHHHHH
T ss_pred CCCEEEEeCCCCcch---hhHHHHHHHH
Confidence 357999999998766 6889999854
No 111
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=37.33 E-value=2.2e+02 Score=27.47 Aligned_cols=88 Identities=26% Similarity=0.262 Sum_probs=58.0
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHH-HHHHHhhCCCCeEEEcchHHHHHHHcCCC
Q 017312 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRL-TAFELVHDRIPATLIADSAAAALMKDGRV 248 (373)
Q Consensus 170 ~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rl-ta~~L~~~GI~vtlI~Dsa~~~~m~~~~v 248 (373)
.+++|.++. -+...|+.|...|-.. .|..+.|-+.+-.-+ |++ +++..++..+.
T Consensus 58 V~vlt~Gp~---------~a~~~lr~aLAmGaDr-aili~d~~~~~~d~~~ta~---------------~Laa~~~~~~~ 112 (260)
T COG2086 58 VTVLTMGPP---------QAEEALREALAMGADR-AILITDRAFAGADPLATAK---------------ALAAAVKKIGP 112 (260)
T ss_pred EEEEEecch---------hhHHHHHHHHhcCCCe-EEEEecccccCccHHHHHH---------------HHHHHHHhcCC
Confidence 678888764 4678889998888764 444444433322222 333 34556667788
Q ss_pred CEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEecc
Q 017312 249 SAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (373)
Q Consensus 249 d~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (373)
|.||.|-.++ ||+ .+-+| +++|...|.|.+--+.
T Consensus 113 ~LVl~G~qa~--D~~-t~qvg----~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 113 DLVLTGKQAI--DGD-TGQVG----PLLAELLGWPQVTYVS 146 (260)
T ss_pred CEEEEecccc--cCC-ccchH----HHHHHHhCCceeeeEE
Confidence 8999999888 553 33444 4789999999986543
No 112
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=36.97 E-value=95 Score=30.14 Aligned_cols=64 Identities=19% Similarity=0.124 Sum_probs=41.0
Q ss_pred ccccHHHHHHHHHHCCC-eeE-EEEecCCCCCcchHHHHHHHhhCCCCeEEEcc---------hHHHHHHHcCCCCEEEE
Q 017312 185 GYGTALGVIRALHSEGV-LER-AYCSETRPFNQGSRLTAFELVHDRIPATLIAD---------SAAAALMKDGRVSAVIV 253 (373)
Q Consensus 185 g~~tal~~l~~a~~~g~-~~~-V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~D---------sa~~~~m~~~~vd~Viv 253 (373)
|.|+-+.-|..+.+.|. +.. +.|.=.+|..++ + ..+.|||+.++.- ..+...|++.++|.+++
T Consensus 93 g~g~nl~~l~~~~~~g~l~~~i~~visn~~~~~~--~----A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~~~~~Dlivl 166 (280)
T TIGR00655 93 KEDHCLGDLLWRWYSGELDAEIALVISNHEDLRS--L----VERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVL 166 (280)
T ss_pred CCChhHHHHHHHHHcCCCCcEEEEEEEcChhHHH--H----HHHhCCCEEEcCCCCcchhhhHHHHHHHHHHhCCCEEEE
Confidence 45777766666677675 333 344455665543 1 4577999998764 34456677788998776
Q ss_pred c
Q 017312 254 G 254 (373)
Q Consensus 254 G 254 (373)
.
T Consensus 167 a 167 (280)
T TIGR00655 167 A 167 (280)
T ss_pred e
Confidence 5
No 113
>PLN02828 formyltetrahydrofolate deformylase
Probab=36.82 E-value=1.4e+02 Score=28.98 Aligned_cols=67 Identities=10% Similarity=0.076 Sum_probs=38.0
Q ss_pred ccccHHHHHHHHHHCCC-eeEEEEecCCC-CCcchHHHHHHHhhCCCCeEEEcc-------hHHHHHHHcCCCCEEEEc
Q 017312 185 GYGTALGVIRALHSEGV-LERAYCSETRP-FNQGSRLTAFELVHDRIPATLIAD-------SAAAALMKDGRVSAVIVG 254 (373)
Q Consensus 185 g~~tal~~l~~a~~~g~-~~~V~v~EsrP-~~qG~rlta~~L~~~GI~vtlI~D-------sa~~~~m~~~~vd~VivG 254 (373)
|.|+-+.-|..++++|. +..|.++=|.| ...+..+ .....+.|||+.+++. ..+...+ .++|.+++.
T Consensus 79 g~g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~-~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l--~~~DliVLA 154 (268)
T PLN02828 79 KQDHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHV-MRFLERHGIPYHYLPTTKENKREDEILELV--KGTDFLVLA 154 (268)
T ss_pred CCChhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchH-HHHHHHcCCCEEEeCCCCCCCHHHHHHHHH--hcCCEEEEe
Confidence 55777766666666665 34444443433 2122222 2234577999998763 2344556 368888765
No 114
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=36.52 E-value=78 Score=25.99 Aligned_cols=54 Identities=24% Similarity=0.242 Sum_probs=33.7
Q ss_pred CCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccC
Q 017312 228 RIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 228 GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
|+++....|......+ .+=|.+|+ +..+|. ..-+...+-.||++|+|+++++..
T Consensus 26 ~~~~~~~~~~~~~~~~--~~~dl~I~----iS~SG~---t~e~i~~~~~a~~~g~~iI~IT~~ 79 (119)
T cd05017 26 KIPVYVVKDYTLPAFV--DRKTLVIA----VSYSGN---TEETLSAVEQAKERGAKIVAITSG 79 (119)
T ss_pred CCCEEEecCccCcCCC--CCCCEEEE----EECCCC---CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 7787777775433233 44455543 334552 233556677899999999998753
No 115
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=36.40 E-value=68 Score=27.27 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=21.9
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCe
Q 017312 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVL 202 (373)
Q Consensus 168 ~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~ 202 (373)
+||+++.+++||.- ..+++.++.|+++|.+
T Consensus 103 ~gDvli~iS~SG~s-----~~vi~a~~~Ak~~G~~ 132 (138)
T PF13580_consen 103 PGDVLIVISNSGNS-----PNVIEAAEEAKERGMK 132 (138)
T ss_dssp TT-EEEEEESSS-S-----HHHHHHHHHHHHTT-E
T ss_pred CCCEEEEECCCCCC-----HHHHHHHHHHHHCCCE
Confidence 79999999998632 3468889999988754
No 116
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.07 E-value=2e+02 Score=29.57 Aligned_cols=58 Identities=16% Similarity=0.046 Sum_probs=34.9
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcc
Q 017312 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGA 255 (373)
Q Consensus 190 l~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGA 255 (373)
+.+.+.+.+.|. +|.+.|.++..... .....|.+.||++.+=.+.. .. ..+|.||++.
T Consensus 29 ~~~A~~L~~~G~--~V~~~d~~~~~~~~-~~~~~l~~~gv~~~~~~~~~---~~--~~~D~Vv~s~ 86 (480)
T PRK01438 29 FAAADALLELGA--RVTVVDDGDDERHR-ALAAILEALGATVRLGPGPT---LP--EDTDLVVTSP 86 (480)
T ss_pred HHHHHHHHHCCC--EEEEEeCCchhhhH-HHHHHHHHcCCEEEECCCcc---cc--CCCCEEEECC
Confidence 334455566665 58888877653322 23456888998875433222 22 5688888765
No 117
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=36.00 E-value=4.4e+02 Score=26.06 Aligned_cols=16 Identities=31% Similarity=0.260 Sum_probs=13.8
Q ss_pred HHHHHHHHhCCCeEEE
Q 017312 271 YSLALCAKFHNILFYV 286 (373)
Q Consensus 271 ~~lA~~Ak~~~vPvyV 286 (373)
-.++-+||+||+|+++
T Consensus 169 ~~i~~~a~~~gi~viv 184 (363)
T TIGR01437 169 EDAAQVAQEHNLPLIV 184 (363)
T ss_pred HHHHHHHHHcCCeEEE
Confidence 4578899999999987
No 118
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=35.47 E-value=1.7e+02 Score=27.49 Aligned_cols=52 Identities=25% Similarity=0.176 Sum_probs=36.8
Q ss_pred hHHHHHHHcCCC-CEEEEcceeEecCCC---------eecccchHHHHHHHHhCCCeEEEeccC
Q 017312 237 SAAAALMKDGRV-SAVIVGADRVAANGD---------TANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 237 sa~~~~m~~~~v-d~VivGAd~I~~nG~---------v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
......+ ..+ |.|+--|-.....+. -.|-.||..+.-+|+..+++-+|.+.+
T Consensus 55 ~~~~~~~--~~~~d~vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss 116 (314)
T COG0451 55 DLVDELA--KGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASS 116 (314)
T ss_pred HHHHHHH--hcCCCEEEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCC
Confidence 4555566 555 887776665544433 489999999999999988877776443
No 119
>PRK04425 Maf-like protein; Reviewed
Probab=35.24 E-value=3e+02 Score=25.26 Aligned_cols=80 Identities=24% Similarity=0.207 Sum_probs=49.2
Q ss_pred HCCCeeEEEEe---cCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEec-CCCeecccchHHH
Q 017312 198 SEGVLERAYCS---ETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAA-NGDTANKIGTYSL 273 (373)
Q Consensus 198 ~~g~~~~V~v~---EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~-nG~v~nkiGT~~l 273 (373)
+.|..|.|+.. |+-+..+..+-++..|++..-. .+. +..-+.+++|||.|+. ||.+..|=.+..-
T Consensus 22 ~~g~~f~v~~~~iDE~~~~~~~p~~~~~~lA~~KA~----------~v~-~~~~~~lvI~aDTvV~~~g~ilgKP~~~ee 90 (196)
T PRK04425 22 RLGIAFQAASPDFDETPMLGESAPQTALRLAEGKAR----------SLT-GRFPEALIVGADQVAWCDGRQWGKPMNLAN 90 (196)
T ss_pred HCCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHH----------HHH-hhCCCCEEEEeCeEEEECCEEecCCCCHHH
Confidence 34888987743 5433333223334455543211 111 1234789999999875 8889999999876
Q ss_pred H--HHHHhCCCeEEEec
Q 017312 274 A--LCAKFHNILFYVAA 288 (373)
Q Consensus 274 A--~~Ak~~~vPvyV~a 288 (373)
| ++-+..|.+..|.+
T Consensus 91 A~~~L~~lsg~~h~v~T 107 (196)
T PRK04425 91 AQKMLMHLSGREIEFYS 107 (196)
T ss_pred HHHHHHHhCCCcEEEEE
Confidence 6 56777777666643
No 120
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=35.10 E-value=1.8e+02 Score=23.34 Aligned_cols=74 Identities=20% Similarity=0.139 Sum_probs=46.1
Q ss_pred chHHHHHHHhhCCCCeEEEcc----hHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhC--CCeEEEecc
Q 017312 216 GSRLTAFELVHDRIPATLIAD----SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFH--NILFYVAAP 289 (373)
Q Consensus 216 G~rlta~~L~~~GI~vtlI~D----sa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~--~vPvyV~a~ 289 (373)
|....+..|.+.|.+|.++-- ..+-..+++.+.|.|.+.+- ..-|.-....++-.+|.. ++|+++-.+
T Consensus 16 Gl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~------~~~~~~~~~~l~~~~k~~~p~~~iv~GG~ 89 (121)
T PF02310_consen 16 GLLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVS------MTPNLPEAKRLARAIKERNPNIPIVVGGP 89 (121)
T ss_dssp HHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEES------SSTHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEcc------CcCcHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 666666678888888887711 22233445579998877442 222334456666667666 788888777
Q ss_pred CccccC
Q 017312 290 LTSIDL 295 (373)
Q Consensus 290 ~~k~~~ 295 (373)
..++.+
T Consensus 90 ~~t~~~ 95 (121)
T PF02310_consen 90 HATADP 95 (121)
T ss_dssp SSGHHH
T ss_pred chhcCh
Confidence 666553
No 121
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=34.91 E-value=2.4e+02 Score=28.60 Aligned_cols=107 Identities=17% Similarity=0.101 Sum_probs=60.1
Q ss_pred cccc-HHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEE-cchHHHHHHHc--CCCCEEEEcc---ee
Q 017312 185 GYGT-ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI-ADSAAAALMKD--GRVSAVIVGA---DR 257 (373)
Q Consensus 185 g~~t-al~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI-~Dsa~~~~m~~--~~vd~VivGA---d~ 257 (373)
|.|- ...+++...+.+...++.+.+-.|...- +-+.+.....-.++++ .|---...+.+ ..+..|...| +.
T Consensus 12 G~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~--~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~~~Vvh~aa~~~~~ 89 (361)
T KOG1430|consen 12 GSGFLGQHLVQALLENELKLEIRVVDKTPTQSN--LPAELTGFRSGRVTVILGDLLDANSISNAFQGAVVVHCAASPVPD 89 (361)
T ss_pred CccHHHHHHHHHHHhcccccEEEEeccCccccc--cchhhhcccCCceeEEecchhhhhhhhhhccCceEEEeccccCcc
Confidence 3344 3567888888887889999998887431 1111111133445555 22222222211 3332222222 22
Q ss_pred EecCC----CeecccchHHHHHHHHhCCCeEEEeccCccc
Q 017312 258 VAANG----DTANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (373)
Q Consensus 258 I~~nG----~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~ 293 (373)
+..|. .-+|--||..+--+|+..||+.+|-..+.-.
T Consensus 90 ~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~V 129 (361)
T KOG1430|consen 90 FVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYV 129 (361)
T ss_pred ccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceE
Confidence 22221 1368899999999999999999996655543
No 122
>PRK14364 Maf-like protein; Provisional
Probab=34.62 E-value=3.1e+02 Score=24.76 Aligned_cols=77 Identities=18% Similarity=0.156 Sum_probs=46.5
Q ss_pred CCCeeEEEE---ecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEec-CCCeecccchHHHH
Q 017312 199 EGVLERAYC---SETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAA-NGDTANKIGTYSLA 274 (373)
Q Consensus 199 ~g~~~~V~v---~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~-nG~v~nkiGT~~lA 274 (373)
.|..|.|+. .|+-+..+.-.-.+..|+... +-.+.+ ..-+.+++|||.|+. ||.+..|=.+..-|
T Consensus 15 ~g~~f~v~~~~~dE~~~~~~~p~~~~~~lA~~K----------A~~v~~-~~~~~~vI~aDTvV~~~g~ilgKP~~~eeA 83 (181)
T PRK14364 15 LGLNFEIYSPDIDESVHEGELVHQYVERLAREK----------AQAVLN-IFPDSVIIAADTSLGLDGQIIGKPDSKQHA 83 (181)
T ss_pred CCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHH----------HHHHHH-hCCCCEEEEeCeEEEECCEEecCCCCHHHH
Confidence 488888874 354333332222344444321 111221 234789999999775 99999999998776
Q ss_pred --HHHHhCCCeEEE
Q 017312 275 --LCAKFHNILFYV 286 (373)
Q Consensus 275 --~~Ak~~~vPvyV 286 (373)
++-+..|....|
T Consensus 84 ~~~L~~lsG~~h~V 97 (181)
T PRK14364 84 FDIWKQLSGRWHDV 97 (181)
T ss_pred HHHHHHhCCCCeEE
Confidence 566666765444
No 123
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=34.46 E-value=76 Score=30.60 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=39.7
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcc----hHHHHHHHcCCCCEEEEcce
Q 017312 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD----SAAAALMKDGRVSAVIVGAD 256 (373)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~D----sa~~~~m~~~~vd~VivGAd 256 (373)
++++.+++.|..++|+++++.|...|.+. .+.-..+-...| ..+..+.++.++|.++.+.|
T Consensus 14 ~~~~~l~~~~~g~~vi~~d~~~~~~~~~~-----~d~~~~~p~~~~~~~~~~l~~~~~~~~id~ii~~~d 78 (326)
T PRK12767 14 QLVKALKKSLLKGRVIGADISELAPALYF-----ADKFYVVPKVTDPNYIDRLLDICKKEKIDLLIPLID 78 (326)
T ss_pred HHHHHHHHhccCCEEEEECCCCcchhhHh-----ccCcEecCCCCChhHHHHHHHHHHHhCCCEEEECCc
Confidence 77888888877899999999988766542 111111101112 24555667788999998876
No 124
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=34.31 E-value=37 Score=28.41 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=30.7
Q ss_pred HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 241 ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 241 ~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
...++.++|.+++|.++ + ...+.| ....-+.++-.+||+|+
T Consensus 97 ~~a~~~~~DLIV~Gs~~----~-~~~~lg-Sva~~v~~~a~~pVLvv 137 (144)
T PRK15118 97 DAIKKYDMDLVVCGHHQ----D-FWSKLM-SSARQLINTVHVDMLIV 137 (144)
T ss_pred HHHHHhCCCEEEEeCcc----c-HHHHHH-HHHHHHHhhCCCCEEEe
Confidence 44456899999999985 2 334578 45556788899999997
No 125
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=34.25 E-value=4e+02 Score=25.39 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=31.7
Q ss_pred HhhCCCCeEEEcc---hHHHHHHHcC---CCCEEEEcceeEe-cCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 224 LVHDRIPATLIAD---SAAAALMKDG---RVSAVIVGADRVA-ANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 224 L~~~GI~vtlI~D---sa~~~~m~~~---~vd~VivGAd~I~-~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
+...|.++..+.. ..+-.++++. .-.++++ ...+. ..| +...+ -.++-+|++||+++++=
T Consensus 102 ~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~~~~v~-~~~~~~~tG-~~~~~--~~i~~~~~~~~~~livD 168 (349)
T cd06454 102 IRLSGAKKRIFKHNDMEDLEKLLREARRPYGKKLIV-TEGVYSMDG-DIAPL--PELVDLAKKYGAILFVD 168 (349)
T ss_pred HHHcCCceEEecCCCHHHHHHHHHHhhccCCCeEEE-EeccccCCC-CccCH--HHHHHHHHHcCCEEEEE
Confidence 3456888776532 2344444321 2223333 22232 234 33443 45778899999999873
No 126
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=34.02 E-value=4.7e+02 Score=26.46 Aligned_cols=87 Identities=9% Similarity=0.038 Sum_probs=45.5
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcch-HHHHHHHhhCCCCeEEEcch---HHHHHHHcCCCCEEEEcceeEe-cCCCe
Q 017312 190 LGVIRALHSEGVLERAYCSETRPFNQGS-RLTAFELVHDRIPATLIADS---AAAALMKDGRVSAVIVGADRVA-ANGDT 264 (373)
Q Consensus 190 l~~l~~a~~~g~~~~V~v~EsrP~~qG~-rlta~~L~~~GI~vtlI~Ds---a~~~~m~~~~vd~VivGAd~I~-~nG~v 264 (373)
..++......|. +|++... .+.+. .++...+...|+.++++... .+...++ ++...|++ +... ..|.+
T Consensus 99 ~~~l~all~~Gd--~Vl~~~~--~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~-~~tklV~~--esp~Nptg~v 171 (403)
T PRK07810 99 FTALGALLGAGD--RLVAARS--LFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALS-VPTQAVFF--ETPSNPMQSL 171 (403)
T ss_pred HHHHHHHhCCCC--EEEEccC--CcchHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcC-cCceEEEE--ECCCCCCCee
Confidence 344444444443 5666543 22222 33344567789999988532 2333331 34444433 1111 23333
Q ss_pred ecccchHHHHHHHHhCCCeEEE
Q 017312 265 ANKIGTYSLALCAKFHNILFYV 286 (373)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~vPvyV 286 (373)
.. --.++-+||++|++++|
T Consensus 172 ~d---l~~I~~la~~~g~~viv 190 (403)
T PRK07810 172 VD---IAAVSELAHAAGAKVVL 190 (403)
T ss_pred cC---HHHHHHHHHHcCCEEEE
Confidence 32 34577789999999887
No 127
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=33.89 E-value=1.2e+02 Score=29.60 Aligned_cols=64 Identities=13% Similarity=0.081 Sum_probs=39.2
Q ss_pred ccccHHHHHHHHHHCCC-eeE-EEEecCCCCCcchHHHHHHHhhCCCCeEEEc---------chHHHHHHHcCCCCEEEE
Q 017312 185 GYGTALGVIRALHSEGV-LER-AYCSETRPFNQGSRLTAFELVHDRIPATLIA---------DSAAAALMKDGRVSAVIV 253 (373)
Q Consensus 185 g~~tal~~l~~a~~~g~-~~~-V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~---------Dsa~~~~m~~~~vd~Viv 253 (373)
|.|+-+..|..+.++|. +.. +.|.=.+|.. .....+.|||+.+++ |..+...+++.++|.+++
T Consensus 102 g~g~nl~al~~~~~~~~l~~~i~~visn~~~~------~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivl 175 (289)
T PRK13010 102 KFDHCLNDLLYRWRMGELDMDIVGIISNHPDL------QPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVL 175 (289)
T ss_pred CCCccHHHHHHHHHCCCCCcEEEEEEECChhH------HHHHHHcCCCEEEeCCCcccccchHHHHHHHHHHhCCCEEEE
Confidence 44666666666666665 344 3444555532 122456799999864 345566677788998776
Q ss_pred c
Q 017312 254 G 254 (373)
Q Consensus 254 G 254 (373)
.
T Consensus 176 a 176 (289)
T PRK13010 176 A 176 (289)
T ss_pred e
Confidence 4
No 128
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=33.79 E-value=1.3e+02 Score=26.48 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=35.8
Q ss_pred HHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccC
Q 017312 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 221 a~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
+..|...|+++..+.|... ..+ .+=|.||+ |...|.. --+..++-.||++|+|++.++..
T Consensus 52 ~~~l~~~g~~~~~~~~~~~-~~~--~~~D~vI~----iS~sG~t---~~~i~~~~~ak~~g~~iI~IT~~ 111 (179)
T cd05005 52 AMRLMHLGLNVYVVGETTT-PAI--GPGDLLIA----ISGSGET---SSVVNAAEKAKKAGAKVVLITSN 111 (179)
T ss_pred HHHHHhCCCeEEEeCCCCC-CCC--CCCCEEEE----EcCCCCc---HHHHHHHHHHHHCCCeEEEEECC
Confidence 3445566777777666421 123 44455543 3334532 23456677899999999998754
No 129
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=33.74 E-value=5.4e+02 Score=26.36 Aligned_cols=106 Identities=18% Similarity=0.089 Sum_probs=58.1
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHH-CCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHH-----HH
Q 017312 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHS-EGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-----AA 241 (373)
Q Consensus 168 ~~~~ILT~~~sgslat~g~~tal~~l~~a~~-~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~-----~~ 241 (373)
+.+.|.|-|-+.+- ..++.-...+.. +.+.-++|++... .+...-+++.|...|.+|||++-..= ..
T Consensus 61 ~~eIiFTSG~TEsn-----NlaI~g~~~a~~~~~~~~HIIts~iE--H~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~ 133 (386)
T COG1104 61 PEEIIFTSGATESN-----NLAIKGAALAYRNAQKGKHIITSAIE--HPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQ 133 (386)
T ss_pred CCeEEEecCCcHHH-----HHHHHhhHHhhhcccCCCeEEEcccc--cHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHH
Confidence 44788997644321 112211112332 2345566655432 22222345678778999999985431 12
Q ss_pred HHHcCCCCEEEEcceeEecCCCeecccchHH----HHHHHHhCCCeEEE
Q 017312 242 LMKDGRVSAVIVGADRVAANGDTANKIGTYS----LALCAKFHNILFYV 286 (373)
Q Consensus 242 ~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~----lA~~Ak~~~vPvyV 286 (373)
+.+.=+-|.++|.- ..+=|-+||.+ ++-+||+++++|.|
T Consensus 134 L~~al~~~T~LVSi------m~aNnE~G~IQpI~ei~~i~k~~~i~fHv 176 (386)
T COG1104 134 LEEALRPDTILVSI------MHANNETGTIQPIAEIGEICKERGILFHV 176 (386)
T ss_pred HHHhcCCCceEEEE------EecccCeeecccHHHHHHHHHHcCCeEEE
Confidence 22212334444322 23447788864 78899999999998
No 130
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=33.06 E-value=77 Score=33.27 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=34.8
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEe
Q 017312 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVA 259 (373)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~ 259 (373)
+...+++..+..+||++-+.+ +-|...+++.....-+.........+..+.++.++|.|++|.+.-+
T Consensus 15 l~~~l~~s~~g~~v~~~~g~~-Npg~~~~~~~~~~~~~~~~~~d~~~l~~~a~~~~id~Vi~g~E~~l 81 (486)
T PRK05784 15 LAEALEKSTKGYKVYALSSYL-NPGINSVVKATGGEYFIGNINSPEEVKKVAKEVNPDLVVIGPEEPL 81 (486)
T ss_pred HHHHHHhCCCCCEEEEEECCC-ChhheeecccccCceEecCCCCHHHHHHHHHHhCCCEEEECCchHH
Confidence 334555554467899885533 4343222221111112111222234555667789999999987543
No 131
>PRK13566 anthranilate synthase; Provisional
Probab=32.95 E-value=1.6e+02 Score=32.52 Aligned_cols=82 Identities=11% Similarity=0.028 Sum_probs=51.2
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEc-ceeEecCCCeecccchHHHHHHHH
Q 017312 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVG-ADRVAANGDTANKIGTYSLALCAK 278 (373)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivG-Ad~I~~nG~v~nkiGT~~lA~~Ak 278 (373)
|+..+|.+.+-...+-+ ..++.|.+.|.+|+++........+...++|.||+. -- |+ .+..+...+--.|.
T Consensus 524 ~~g~~IlvID~~dsf~~--~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGp-----gs-p~d~~~~~lI~~a~ 595 (720)
T PRK13566 524 GEGKRVLLVDHEDSFVH--TLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGP-----GR-PSDFDCKATIDAAL 595 (720)
T ss_pred CCCCEEEEEECCCchHH--HHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCC-----CC-hhhCCcHHHHHHHH
Confidence 34557777776554433 447789999999999887654444444577887652 11 11 23344555555566
Q ss_pred hCCCeEEEecc
Q 017312 279 FHNILFYVAAP 289 (373)
Q Consensus 279 ~~~vPvyV~a~ 289 (373)
..++|++-+|=
T Consensus 596 ~~~iPILGICl 606 (720)
T PRK13566 596 ARNLPIFGVCL 606 (720)
T ss_pred HCCCcEEEEeh
Confidence 78999997663
No 132
>PRK05939 hypothetical protein; Provisional
Probab=32.69 E-value=5.2e+02 Score=26.10 Aligned_cols=84 Identities=17% Similarity=0.116 Sum_probs=45.6
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcch---HHHHHHHcCCCCEEEEcceeEecCCCeec
Q 017312 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS---AAAALMKDGRVSAVIVGADRVAANGDTAN 266 (373)
Q Consensus 190 l~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Ds---a~~~~m~~~~vd~VivGAd~I~~nG~v~n 266 (373)
..++....+.|. +|++.+ |.+-+.......+...|+.++++.-. .+...+ .++...|++ + ..-|
T Consensus 76 ~~~l~all~~Gd--~Vv~~~--~~y~~t~~~~~~l~~~G~~v~~v~~~d~e~l~~~l-~~~tklV~v-------e-sp~N 142 (397)
T PRK05939 76 AAVFLTLLRAGD--HLVSSQ--FLFGNTNSLFGTLRGLGVEVTMVDATDVQNVAAAI-RPNTRMVFV-------E-TIAN 142 (397)
T ss_pred HHHHHHHcCCCC--EEEECC--CccccHHHHHHHHHhcCCEEEEECCCCHHHHHHhC-CCCCeEEEE-------E-CCCC
Confidence 344444444454 566644 44433221123467789998887522 233334 244444443 1 2344
Q ss_pred ccchH----HHHHHHHhCCCeEEE
Q 017312 267 KIGTY----SLALCAKFHNILFYV 286 (373)
Q Consensus 267 kiGT~----~lA~~Ak~~~vPvyV 286 (373)
..|.. .++-+||++|++++|
T Consensus 143 ptG~v~dl~~I~~la~~~gi~liv 166 (397)
T PRK05939 143 PGTQVADLAGIGALCRERGLLYVV 166 (397)
T ss_pred CCCCHHhHHHHHHHHHHcCCEEEE
Confidence 44533 467788999999887
No 133
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=32.63 E-value=3.5e+02 Score=27.76 Aligned_cols=87 Identities=23% Similarity=0.249 Sum_probs=48.0
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchH-HHHHHHhhCCCCeEEEcch---HHHHHHHcCCCCEEEEcceeE-ecCCCee
Q 017312 191 GVIRALHSEGVLERAYCSETRPFNQGSR-LTAFELVHDRIPATLIADS---AAAALMKDGRVSAVIVGADRV-AANGDTA 265 (373)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~r-lta~~L~~~GI~vtlI~Ds---a~~~~m~~~~vd~VivGAd~I-~~nG~v~ 265 (373)
..+....+.|. +|++.+ |.+.|.. +....+...|+++..+.-. .+...++ +++..|++- .. -+.|.+.
T Consensus 94 ~al~~ll~~GD--~Vlv~~--~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~-~~tklV~l~--sp~NPtG~v~ 166 (431)
T PRK08248 94 YSILNIASAGD--EIVSSS--SLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAIT-DKTKALFAE--TIGNPKGDVL 166 (431)
T ss_pred HHHHHHhCCCC--EEEEcc--CchhhHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcC-CCCeEEEEE--CCCCCCCccc
Confidence 34444444454 465554 5554432 3334467789999888632 2333342 355566552 22 1235444
Q ss_pred cccchHHHHHHHHhCCCeEEEe
Q 017312 266 NKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 266 nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
. + -.++-+||++|++++|=
T Consensus 167 d-i--~~I~~la~~~gi~vIvD 185 (431)
T PRK08248 167 D-I--EAVAAIAHEHGIPLIVD 185 (431)
T ss_pred C-H--HHHHHHHHHcCCEEEEe
Confidence 3 2 46778899999998874
No 134
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=32.57 E-value=5.6e+02 Score=26.19 Aligned_cols=95 Identities=9% Similarity=0.044 Sum_probs=53.7
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcc---hHHHHHHHc
Q 017312 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD---SAAAALMKD 245 (373)
Q Consensus 169 ~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~D---sa~~~~m~~ 245 (373)
|.++...+.. ..+.++.+.+.+-|....++++.+.+..--.++ ...+...+.++.++.+ ..+...+++
T Consensus 300 gkrv~v~g~~--------~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l-~~~~~~~~~~~~v~~~~d~~e~~~~l~~ 370 (429)
T cd03466 300 GRKAAIYGEP--------DFVVAITRFVLENGMVPVLIATGSESKKLKEKL-EEDLKEYVEKCVILDGADFFDIESYAKE 370 (429)
T ss_pred CCEEEEEcCH--------HHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHH-HHHHHhcCCceEEEeCCCHHHHHHHHHh
Confidence 5566665532 345566666667787776666665443322222 2234555666555544 345556655
Q ss_pred CCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEec
Q 017312 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (373)
Q Consensus 246 ~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (373)
.++|.+| |+..-..+|++.++|++.+.
T Consensus 371 ~~~dlii----------------G~s~~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 371 LKIDVLI----------------GNSYGRRIAEKLGIPLIRIG 397 (429)
T ss_pred cCCCEEE----------------ECchhHHHHHHcCCCEEEec
Confidence 6666542 22233467899999998664
No 135
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=32.32 E-value=5e+02 Score=26.05 Aligned_cols=85 Identities=20% Similarity=0.118 Sum_probs=43.9
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcch-HHHHHHHhhCCCCeEEEcc---hHHHHHHHcCCCCEEEEcceeE-ecCCCeec
Q 017312 192 VIRALHSEGVLERAYCSETRPFNQGS-RLTAFELVHDRIPATLIAD---SAAAALMKDGRVSAVIVGADRV-AANGDTAN 266 (373)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~-rlta~~L~~~GI~vtlI~D---sa~~~~m~~~~vd~VivGAd~I-~~nG~v~n 266 (373)
++....+.|. +|++. +|.+.+. .+....+...|+.++.+.- ..+...+ +++...|++- .. -..|.+..
T Consensus 92 al~al~~~Gd--~Vi~~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i-~~~tklV~ie--~p~NptG~v~d 164 (390)
T PRK08133 92 VVMALLQAGD--HVVSS--RSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAV-RPNTKLFFLE--TPSNPLTELAD 164 (390)
T ss_pred HHHHHhCCCC--EEEEc--cCcchhHHHHHHHHHHHcCcEEEEECCCCHHHHHHhc-CcCCeEEEEE--CCCCCCCCcCC
Confidence 4444444454 56553 3444332 2222346678999888742 2333334 2444444431 11 12333321
Q ss_pred ccchHHHHHHHHhCCCeEEE
Q 017312 267 KIGTYSLALCAKFHNILFYV 286 (373)
Q Consensus 267 kiGT~~lA~~Ak~~~vPvyV 286 (373)
--.++-+||+||++++|
T Consensus 165 ---l~~I~~la~~~gi~liv 181 (390)
T PRK08133 165 ---IAALAEIAHAAGALLVV 181 (390)
T ss_pred ---HHHHHHHHHHcCCEEEE
Confidence 15677789999999887
No 136
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=32.03 E-value=80 Score=28.22 Aligned_cols=49 Identities=22% Similarity=0.200 Sum_probs=36.0
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCC
Q 017312 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 229 (373)
Q Consensus 168 ~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI 229 (373)
+-+-|+-|.- -|+.+..|+ .||++-|.+-|+-=.+.-.+| |+.|.+.|.
T Consensus 80 ~AdlVIsHAG--------aGS~letL~----l~KPlivVvNd~LMDNHQ~EL-A~qL~~egy 128 (170)
T KOG3349|consen 80 SADLVISHAG--------AGSCLETLR----LGKPLIVVVNDSLMDNHQLEL-AKQLAEEGY 128 (170)
T ss_pred hccEEEecCC--------cchHHHHHH----cCCCEEEEeChHhhhhHHHHH-HHHHHhcCc
Confidence 4466666753 366777665 589999999998777766677 778999885
No 137
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=31.64 E-value=2.8e+02 Score=22.36 Aligned_cols=62 Identities=19% Similarity=0.143 Sum_probs=35.2
Q ss_pred HHhhCCCCeEEEcchHHHHHH--HcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCc
Q 017312 223 ELVHDRIPATLIADSAAAALM--KDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (373)
Q Consensus 223 ~L~~~GI~vtlI~Dsa~~~~m--~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (373)
.|...|.++..+.|....... .-..-|.+|+ +...|.. .-+..++-.||.+|+|+++++...
T Consensus 34 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----iS~~g~~---~~~~~~~~~a~~~g~~iv~iT~~~ 97 (139)
T cd05013 34 KLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIA----ISFSGET---KETVEAAEIAKERGAKVIAITDSA 97 (139)
T ss_pred HHHHcCCceEEecCHHHHHHHHHcCCCCCEEEE----EeCCCCC---HHHHHHHHHHHHcCCeEEEEcCCC
Confidence 344455566665554432221 0134466654 3345543 234556778999999999987643
No 138
>PRK08462 biotin carboxylase; Validated
Probab=31.54 E-value=1.3e+02 Score=30.68 Aligned_cols=78 Identities=15% Similarity=0.072 Sum_probs=43.9
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCC--cchHHHHHHHhhCCCCe-------EEEcchHHH
Q 017312 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFN--QGSRLTAFELVHDRIPA-------TLIADSAAA 240 (373)
Q Consensus 170 ~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~--qG~rlta~~L~~~GI~v-------tlI~Dsa~~ 240 (373)
.+||..+.+ -.+..+++.|++.|.. |+++-+.|.. .+.+ +++..+.+ .|+--..+-
T Consensus 5 k~ili~~~g--------~~~~~~~~~~~~~G~~--~v~~~~~~d~~~~~~~-----~ad~~~~~~~~~~~~~y~~~~~l~ 69 (445)
T PRK08462 5 KRILIANRG--------EIALRAIRTIQEMGKE--AIAIYSTADKDALYLK-----YADAKICIGGAKSSESYLNIPAII 69 (445)
T ss_pred CEEEEECCc--------HHHHHHHHHHHHcCCC--EEEEechhhcCCchhh-----hCCEEEEeCCCchhcccCCHHHHH
Confidence 467776532 2367899999998854 5555444433 2222 22222211 333223445
Q ss_pred HHHHcCCCCEEEEcceeEecCC
Q 017312 241 ALMKDGRVSAVIVGADRVAANG 262 (373)
Q Consensus 241 ~~m~~~~vd~VivGAd~I~~nG 262 (373)
.+-++.++|.|+-|.+....|.
T Consensus 70 ~~~~~~~~D~i~pg~g~lse~~ 91 (445)
T PRK08462 70 SAAEIFEADAIFPGYGFLSENQ 91 (445)
T ss_pred HHHHHcCCCEEEECCCccccCH
Confidence 5556789999999986544444
No 139
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=31.18 E-value=55 Score=28.01 Aligned_cols=85 Identities=18% Similarity=0.228 Sum_probs=47.5
Q ss_pred cccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCC-CCeEEEcchH-------HHHHHHcCCCCEEEE
Q 017312 182 ATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDR-IPATLIADSA-------AAALMKDGRVSAVIV 253 (373)
Q Consensus 182 at~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~G-I~vtlI~Dsa-------~~~~m~~~~vd~Viv 253 (373)
+|.|+.++|.++.-|++.|-+--++|-..|+.. -.+.+ ++-.++.|+- +.--| .+=|.+
T Consensus 2 ~tlaSHSALqIl~GAk~EGFrT~~ic~~~r~~~---------Y~~f~~iDe~i~~d~f~di~~~~~q~~L--~~~N~I-- 68 (124)
T PF06849_consen 2 ATLASHSALQILDGAKDEGFRTIAICQKGREKF---------YRRFPFIDEVIVLDSFSDILSEEVQEKL--REMNAI-- 68 (124)
T ss_dssp EEESSTTHHHHHHHHHHTT--EEEEEETTCHHH---------HHTTTT-SEEEEESSCGHCCSHHHHHHH--HHTTEE--
T ss_pred eeeechHHHHHhhhHHHcCCcEEEEECCCCcch---------hhhcCcCcEEEEeCCHHHHHhHHHHHHH--HHCCeE--
Confidence 455668899999999999988888887766332 11222 3444555522 22223 244555
Q ss_pred cceeEecCCCeecccchHHHHHHHHhCCCeEEE
Q 017312 254 GADRVAANGDTANKIGTYSLALCAKFHNILFYV 286 (373)
Q Consensus 254 GAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV 286 (373)
+.+||+.+.=+|.-.+ -+.+.||++=
T Consensus 69 ----~VPhgSfv~Y~G~d~i---e~~~~vP~FG 94 (124)
T PF06849_consen 69 ----FVPHGSFVAYVGYDRI---ENEFKVPIFG 94 (124)
T ss_dssp ----E--BTTHHHHH-HHHH---HHT-SS-EES
T ss_pred ----EecCCCeeEeecHHHH---hhcCCCCeec
Confidence 4589988887776542 3557888763
No 140
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=30.88 E-value=4.9e+02 Score=25.07 Aligned_cols=42 Identities=26% Similarity=0.198 Sum_probs=29.0
Q ss_pred CCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccC-ccccCC
Q 017312 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL-TSIDLT 296 (373)
Q Consensus 246 ~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~-~k~~~~ 296 (373)
.+.|.||...|.+. .| ..+.-.|+.+++||+.+... -|+||.
T Consensus 120 ~~~D~VIdaiD~~~------~k---~~L~~~c~~~~ip~I~~gGag~k~dp~ 162 (268)
T PRK15116 120 AGFSYVIDAIDSVR------PK---AALIAYCRRNKIPLVTTGGAGGQIDPT 162 (268)
T ss_pred CCCCEEEEcCCCHH------HH---HHHHHHHHHcCCCEEEECCcccCCCCC
Confidence 46888877666542 22 35667889999999987665 456654
No 141
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=30.68 E-value=4.2e+02 Score=25.40 Aligned_cols=107 Identities=18% Similarity=0.150 Sum_probs=63.2
Q ss_pred cccccHHHHHHHH---HHCC----CeeEEEEecC--CCCCcchHHHHHHHhhCCCCeE-EEc-chHHHHHHHcCCCCEEE
Q 017312 184 AGYGTALGVIRAL---HSEG----VLERAYCSET--RPFNQGSRLTAFELVHDRIPAT-LIA-DSAAAALMKDGRVSAVI 252 (373)
Q Consensus 184 ~g~~tal~~l~~a---~~~g----~~~~V~v~Es--rP~~qG~rlta~~L~~~GI~vt-lI~-Dsa~~~~m~~~~vd~Vi 252 (373)
+|-.|+...++.| .+.+ .+..|+-++- -|..-+.--.++.|.++|..|- |+. |-.++.-+..-.|-.|+
T Consensus 77 aGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~GcaavM 156 (262)
T COG2022 77 AGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVM 156 (262)
T ss_pred cccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcCceEec
Confidence 4557777655443 4433 2566765553 2222233234667999998775 333 56667777444444554
Q ss_pred EcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCccc
Q 017312 253 VGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (373)
Q Consensus 253 vGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~ 293 (373)
=.+.=|-+|=++.|+ |.+=++-.+.+||++|=+..-+.
T Consensus 157 Pl~aPIGSg~G~~n~---~~l~iiie~a~VPviVDAGiG~p 194 (262)
T COG2022 157 PLGAPIGSGLGLQNP---YNLEIIIEEADVPVIVDAGIGTP 194 (262)
T ss_pred cccccccCCcCcCCH---HHHHHHHHhCCCCEEEeCCCCCh
Confidence 444444444444444 66777777779999998776553
No 142
>PRK12342 hypothetical protein; Provisional
Probab=30.57 E-value=4.2e+02 Score=25.37 Aligned_cols=92 Identities=13% Similarity=0.016 Sum_probs=56.1
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcch--HHHHHHHhhCCCCeEEEcchHHHHHHHcCC
Q 017312 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGS--RLTAFELVHDRIPATLIADSAAAALMKDGR 247 (373)
Q Consensus 170 ~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~--rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~ 247 (373)
.+++|.++... ....+++.|...|-.--|.+.+ |- +.|. .-|++-|+ ..+++..
T Consensus 54 Vtvls~Gp~~a-------~~~~l~r~alamGaD~avli~d-~~-~~g~D~~ata~~La---------------~~i~~~~ 109 (254)
T PRK12342 54 IAALTVGGSLL-------QNSKVRKDVLSRGPHSLYLVQD-AQ-LEHALPLDTAKALA---------------AAIEKIG 109 (254)
T ss_pred EEEEEeCCChH-------hHHHHHHHHHHcCCCEEEEEec-Cc-cCCCCHHHHHHHHH---------------HHHHHhC
Confidence 67789887410 1223558788888876666553 32 2233 23455443 4455556
Q ss_pred CCEEEEcceeEecCCCeecccchHHH-HHHHHhCCCeEEEeccCccc
Q 017312 248 VSAVIVGADRVAANGDTANKIGTYSL-ALCAKFHNILFYVAAPLTSI 293 (373)
Q Consensus 248 vd~VivGAd~I~~nG~v~nkiGT~~l-A~~Ak~~~vPvyV~a~~~k~ 293 (373)
+|.||.|-.++ ||+ |.++ +++|...|+|++-.+...++
T Consensus 110 ~DLVl~G~~s~--D~~------tgqvg~~lA~~Lg~P~vt~v~~~~~ 148 (254)
T PRK12342 110 FDLLLFGEGSG--DLY------AQQVGLLLGELLQLPVINAVSKIQR 148 (254)
T ss_pred CCEEEEcCCcc--cCC------CCCHHHHHHHHhCCCcEeeEEEEEE
Confidence 99999997665 442 2333 58899999999866544443
No 143
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=30.53 E-value=3.7e+02 Score=23.53 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=25.1
Q ss_pred HHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEE
Q 017312 220 TAFELVHDRIPATLIADSAAAALMKDGRVSAVIV 253 (373)
Q Consensus 220 ta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~Viv 253 (373)
+++.+.+.|+++..|+|+.-+.+- +..|.++.
T Consensus 94 ~~~~ak~~g~~iI~IT~~~~s~la--~~ad~~l~ 125 (179)
T cd05005 94 AAEKAKKAGAKVVLITSNPDSPLA--KLADVVVV 125 (179)
T ss_pred HHHHHHHCCCeEEEEECCCCCchH--HhCCEEEE
Confidence 355678899999999998877776 56777664
No 144
>PRK15029 arginine decarboxylase; Provisional
Probab=30.41 E-value=1.9e+02 Score=32.23 Aligned_cols=86 Identities=6% Similarity=0.030 Sum_probs=53.4
Q ss_pred EEEEecCCCCC------cchHHHHHHHhhCCCCeEEEcchHHHHH-HHc-CCCCEEEEcceeEecCCCeecccchHHHHH
Q 017312 204 RAYCSETRPFN------QGSRLTAFELVHDRIPATLIADSAAAAL-MKD-GRVSAVIVGADRVAANGDTANKIGTYSLAL 275 (373)
Q Consensus 204 ~V~v~EsrP~~------qG~rlta~~L~~~GI~vtlI~Dsa~~~~-m~~-~~vd~VivGAd~I~~nG~v~nkiGT~~lA~ 275 (373)
+|.++|..+.. +-.+.....|.+.|..|....+..-+.. +++ ..+|.||+ |.-+++++-.. -|.-.+--
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLL--D~~LPd~dG~~-~~~ell~~ 78 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMF--SYQMEHPDEHQ-NVRQLIGK 78 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEE--ECCCCCCccch-hHHHHHHH
Confidence 46777776642 2234456789999999999887654443 333 47999999 55667665222 11222222
Q ss_pred HHH-hCCCeEEEeccCcc
Q 017312 276 CAK-FHNILFYVAAPLTS 292 (373)
Q Consensus 276 ~Ak-~~~vPvyV~a~~~k 292 (373)
+-+ ..++|+++++...+
T Consensus 79 IR~~~~~iPIIlLTar~~ 96 (755)
T PRK15029 79 LHERQQNVPVFLLGDREK 96 (755)
T ss_pred HHhhCCCCCEEEEEcCCc
Confidence 322 35899999976654
No 145
>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional
Probab=30.37 E-value=2.1e+02 Score=26.83 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=55.6
Q ss_pred HHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCC-CeeEEEEecC-CCCCcchHHHHHHHhhCCCCeEE
Q 017312 156 YGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEG-VLERAYCSET-RPFNQGSRLTAFELVHDRIPATL 233 (373)
Q Consensus 156 ~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g-~~~~V~v~Es-rP~~qG~rlta~~L~~~GI~vtl 233 (373)
.++.+|+ ||++|..-+.. +++....+++...+++ ++++++-..+ .+.. |.. .|...|
T Consensus 10 eAv~~I~-----DG~ti~~gGf~------~~~~P~ali~al~r~~~~dLtli~~~~g~~~~-g~~----~L~~~G----- 68 (219)
T PRK09920 10 DATGFFR-----DGMTIMVGGFM------GIGTPSRLVEALLESGVRDLTLIANDTAFVDT-GIG----PLIVNG----- 68 (219)
T ss_pred HHHhcCC-----CCCEEEECccc------CcCCHHHHHHHHHhcCCCceEEEEeCCCCCCc-chh----hHhhCC-----
Confidence 4556788 99999886554 2356777788777777 5688886332 2222 211 233333
Q ss_pred EcchHHHHHHHcCCCCEEEEcce-------eEecCCCe---ecccchHHHHHHHHhCCCeEEEe
Q 017312 234 IADSAAAALMKDGRVSAVIVGAD-------RVAANGDT---ANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 234 I~Dsa~~~~m~~~~vd~VivGAd-------~I~~nG~v---~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
.|.+++.|-= +-+.+|.+ .-.-||..--+-|-..|+|++..
T Consensus 69 -------------~Vkr~i~s~~g~~p~~~~~~~~g~ie~~~~pqg~l~~~lRA~a~G~Pg~~t 119 (219)
T PRK09920 69 -------------RVKKVIASHIGTNPETGRRMISGEMDVELVPQGTLIEQIRCGGAGLGGFLT 119 (219)
T ss_pred -------------CEeEEEeccccCCHHHHHHHHcCCeEEEECCHHHHHHHHHHHHCCCCceee
Confidence 2222222210 01123332 13567888888888889988763
No 146
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=30.32 E-value=1.6e+02 Score=29.03 Aligned_cols=33 Identities=21% Similarity=0.034 Sum_probs=23.6
Q ss_pred EcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCc
Q 017312 253 VGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (373)
Q Consensus 253 vGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (373)
.++|.|..|- -.+..+++|+.+|||++..+.+.
T Consensus 103 ~~pDlvi~d~------~~~~~~~~A~~~giP~v~~~~~~ 135 (401)
T cd03784 103 WGPDLVVADP------LAFAGAVAAEALGIPAVRLLLGP 135 (401)
T ss_pred cCCCEEEeCc------HHHHHHHHHHHhCCCeEEeeccc
Confidence 3566666553 33556789999999999887654
No 147
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=30.07 E-value=6.3e+02 Score=26.04 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=48.8
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcch-HHHHHHHhhCCCCeEEEcc----hHHHHHHHcCCCCEEEEcceeEecCCCeec
Q 017312 192 VIRALHSEGVLERAYCSETRPFNQGS-RLTAFELVHDRIPATLIAD----SAAAALMKDGRVSAVIVGADRVAANGDTAN 266 (373)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~-rlta~~L~~~GI~vtlI~D----sa~~~~m~~~~vd~VivGAd~I~~nG~v~n 266 (373)
++..+.+.|. +|++ +.|.+.|. +++...+...|+.++++.- ..+...++ ++ +++|+ .+.. | |
T Consensus 92 al~all~~GD--~VI~--~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~-~~-Tk~I~-~e~p---g---n 158 (432)
T PRK06702 92 AVLNICSSGD--HLLC--SSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALAN-DK-TKLVY-AESL---G---N 158 (432)
T ss_pred HHHHhcCCCC--EEEE--CCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCC-cC-CeEEE-EEcC---C---C
Confidence 4444444454 5665 45666543 3434447889999998753 34555552 33 34444 3332 2 3
Q ss_pred cc----chHHHHHHHHhCCCeEEEe
Q 017312 267 KI----GTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 267 ki----GT~~lA~~Ak~~~vPvyV~ 287 (373)
.. ---.++-+||+||+++++=
T Consensus 159 P~~~v~Di~~I~~iA~~~gi~livD 183 (432)
T PRK06702 159 PAMNVLNFKEFSDAAKELEVPFIVD 183 (432)
T ss_pred ccccccCHHHHHHHHHHcCCEEEEE
Confidence 33 3567788999999999873
No 148
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=29.87 E-value=5.1e+02 Score=24.90 Aligned_cols=153 Identities=19% Similarity=0.196 Sum_probs=81.9
Q ss_pred HHHHHHHHhhcccC---CCCHHHHHHHHHHHHHHHHh--CCCCcc----cHHHHHHHHHHHHHHHhh-----ccCCHHHH
Q 017312 66 ALSLAVEVFNLNAF---SGTAADAASFLGNKLEYLVS--SRPTAV----NLSDAAAKLKEIISKAAA-----TASEANSV 131 (373)
Q Consensus 66 a~~l~~~~~~~~~~---~~~~~el~~~l~~~~~~L~~--~RPtav----~l~nai~~~~~~i~~~~~-----~~~~~~e~ 131 (373)
|+|++..+.+.... ..-.+.+...+++..+.+.+ .-|--| ++.+....+++.+.+..- .-.+-+++
T Consensus 21 AwGIAk~l~~~GAeL~fTy~~e~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~~g~lD~lVHsIaFa~k~el 100 (259)
T COG0623 21 AWGIAKALAEQGAELAFTYQGERLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKKWGKLDGLVHSIAFAPKEEL 100 (259)
T ss_pred HHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHhhCcccEEEEEeccCChHHh
Confidence 57777777653110 01124566777777777654 233334 355555555554433310 11344566
Q ss_pred HHHHHHHHH-HHHHH-HHH--HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCc-ccccccccHHHHHHHHHHCCCeeEEE
Q 017312 132 FQAYIEAAE-IMLKD-DVA--TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGS-LATAGYGTALGVIRALHSEGVLERAY 206 (373)
Q Consensus 132 ~~~l~~~~~-~~~~e-~~~--a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgs-lat~g~~tal~~l~~a~~~g~~~~V~ 206 (373)
.-.+++.-+ .|..- ++. .--.+++.+..++. +|..|+|..+-|+ -+--.|. +.++-+.+.+.
T Consensus 101 ~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~-----~ggSiltLtYlgs~r~vPnYN-vMGvAKAaLEa------- 167 (259)
T COG0623 101 KGDYLDTSREGFLIAMDISAYSFTALAKAARPLMN-----NGGSILTLTYLGSERVVPNYN-VMGVAKAALEA------- 167 (259)
T ss_pred CCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcC-----CCCcEEEEEeccceeecCCCc-hhHHHHHHHHH-------
Confidence 555555322 22211 222 22345555666666 7888988887776 4445565 55555655543
Q ss_pred EecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH
Q 017312 207 CSETRPFNQGSRLTAFELVHDRIPATLIADSAAA 240 (373)
Q Consensus 207 v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~ 240 (373)
..|-+|++|-..||.|--|+-.-+-
T Consensus 168 ---------svRyLA~dlG~~gIRVNaISAGPIr 192 (259)
T COG0623 168 ---------SVRYLAADLGKEGIRVNAISAGPIR 192 (259)
T ss_pred ---------HHHHHHHHhCccCeEEeeecccchH
Confidence 2355577787778877766654443
No 149
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=29.85 E-value=6.1e+02 Score=26.00 Aligned_cols=103 Identities=17% Similarity=0.055 Sum_probs=56.9
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEe-cC---------CCCCcchHHHHHHHhhCCCCeEEEcch--
Q 017312 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCS-ET---------RPFNQGSRLTAFELVHDRIPATLIADS-- 237 (373)
Q Consensus 170 ~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~-Es---------rP~~qG~rlta~~L~~~GI~vtlI~Ds-- 237 (373)
+.|+++..+ |++...++..+...++.+-++-. +. ++..-|.+.++..|.+.|||.+++.-.
T Consensus 65 d~ii~~~~t-------f~~~~~~~~~~~~~~~Pvll~a~~~~~~~~~~~~~~~s~~g~~~~~~~l~r~gi~~~~v~g~~~ 137 (452)
T cd00578 65 DGLIVWMHT-------FGPAKMWIAGLSELRKPVLLLATQFNREIPDFMNLNQSACGLREFGNILARLGIPFKVVYGHWK 137 (452)
T ss_pred cEEEEcccc-------cccHHHHHHHHHhcCCCEEEEeCCCCCCCCchhhhhcchhhhHHHHHHHHHcCCceeEEECCCC
Confidence 556655443 34555555656555666655544 32 334447777788899999999987422
Q ss_pred --H-------------HHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 238 --A-------------AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 238 --a-------------~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
. +-.-| ++....++|.- ..| ++...+. -..+-+.+|+.|--+
T Consensus 138 d~~~~~~i~~~~raa~~~~~l--r~~rig~iG~~---~~~-~~~~~~d--~~~~~~~fG~~v~~i 194 (452)
T cd00578 138 DEDVLRKIESWARAAAAVATL--RGLRVGRFGDR---MRG-MAVTEGD--KVLAQIKFGVSVEYL 194 (452)
T ss_pred CHHHHHHHHHHHHHHHHHHHh--hcCceEEECCC---cCC-cEEecCC--HHHHHHhhCeEEEEE
Confidence 0 12223 55667777742 223 3322222 223356678877543
No 150
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=29.85 E-value=1.3e+02 Score=28.88 Aligned_cols=55 Identities=13% Similarity=0.046 Sum_probs=33.9
Q ss_pred HHHHHHcCCCCEEEEcceeEecC---C-----CeecccchHHHHHHHHhCCCeEEEeccCccc
Q 017312 239 AAALMKDGRVSAVIVGADRVAAN---G-----DTANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (373)
Q Consensus 239 ~~~~m~~~~vd~VivGAd~I~~n---G-----~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~ 293 (373)
+..+++..++|.||=-|-....+ . .-+|-.||..++-+|+.+|++|+.+...+-|
T Consensus 46 ~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy 108 (299)
T PRK09987 46 VAETVRKIRPDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYSTDYVF 108 (299)
T ss_pred HHHHHHhcCCCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEccceEE
Confidence 33445334577776433222111 0 1368899999999999999987766554434
No 151
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=29.83 E-value=2.8e+02 Score=25.93 Aligned_cols=97 Identities=15% Similarity=0.130 Sum_probs=49.1
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhh-CCCCeEE---EcchHHHHHHHcCCCCEEEEcceeEecCCC---
Q 017312 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH-DRIPATL---IADSAAAALMKDGRVSAVIVGADRVAANGD--- 263 (373)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~-~GI~vtl---I~Dsa~~~~m~~~~vd~VivGAd~I~~nG~--- 263 (373)
.+++.+.++|...+|++.+..+......... .+.. .++.+.. -....+..+++..++|.||-.|-....+-.
T Consensus 14 ~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~ 92 (317)
T TIGR01181 14 NFVRYILNEHPDAEVIVLDKLTYAGNLENLA-DLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHFAAESHVDRSISG 92 (317)
T ss_pred HHHHHHHHhCCCCEEEEecCCCcchhhhhhh-hhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEcccccCchhhhhC
Confidence 3556565566556777765322111111111 2221 2333321 122345566743358988877743321111
Q ss_pred -----eecccchHHHHHHHHhC--CCeEEEec
Q 017312 264 -----TANKIGTYSLALCAKFH--NILFYVAA 288 (373)
Q Consensus 264 -----v~nkiGT~~lA~~Ak~~--~vPvyV~a 288 (373)
-.|-.|+..++-+|+++ +++++.+.
T Consensus 93 ~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~S 124 (317)
T TIGR01181 93 PAAFIETNVVGTYTLLEAVRKYWHEFRFHHIS 124 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence 24778899998888885 44655443
No 152
>PRK00648 Maf-like protein; Reviewed
Probab=29.68 E-value=3.8e+02 Score=24.38 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=32.4
Q ss_pred CCCEEEEcceeEec-CCCeecccchHHHH--HHHHhCCCeEEEec
Q 017312 247 RVSAVIVGADRVAA-NGDTANKIGTYSLA--LCAKFHNILFYVAA 288 (373)
Q Consensus 247 ~vd~VivGAd~I~~-nG~v~nkiGT~~lA--~~Ak~~~vPvyV~a 288 (373)
.-+.+++|||.|.. ||.+..|=.+..-| ++.+..|.+..|..
T Consensus 63 ~~~~~VI~aDTvV~~~g~ilgKP~~~~eA~~~L~~lsG~~h~v~T 107 (191)
T PRK00648 63 FPDELIITADTIVWYDGKVLGKPKDEEEAVEMLRTLSGKTHEVIT 107 (191)
T ss_pred CCCCEEEEeCeEEEECCEEeCCCCCHHHHHHHHHHhCCCCeEEEE
Confidence 35789999999775 99999999998766 56666777665543
No 153
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=29.58 E-value=1.6e+02 Score=28.56 Aligned_cols=67 Identities=12% Similarity=0.077 Sum_probs=38.9
Q ss_pred ccHHHHHHHHHHCCC-eeEEEEec-CCCCCcchHHHHHHHhhCCCCeEEEc---------chHHHHHHHcCCCCEEEEcc
Q 017312 187 GTALGVIRALHSEGV-LERAYCSE-TRPFNQGSRLTAFELVHDRIPATLIA---------DSAAAALMKDGRVSAVIVGA 255 (373)
Q Consensus 187 ~tal~~l~~a~~~g~-~~~V~v~E-srP~~qG~rlta~~L~~~GI~vtlI~---------Dsa~~~~m~~~~vd~VivGA 255 (373)
|+-+..|..+.+.|. +..|.++= .+|..++ + ..+.|||+.+++ |..+...+++.++|.+++..
T Consensus 100 gsnl~al~~~~~~~~~~~~i~~visn~~~~~~--l----A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlag 173 (286)
T PRK06027 100 DHCLGDLLWRWRSGELPVEIAAVISNHDDLRS--L----VERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLAR 173 (286)
T ss_pred CCCHHHHHHHHHcCCCCcEEEEEEEcChhHHH--H----HHHhCCCEEEeccCccccchhHHHHHHHHHHhCCCEEEEec
Confidence 666665655655554 34444333 3443221 1 456799999865 22445667778899887765
Q ss_pred -eeEe
Q 017312 256 -DRVA 259 (373)
Q Consensus 256 -d~I~ 259 (373)
-+|+
T Consensus 174 y~~il 178 (286)
T PRK06027 174 YMQIL 178 (286)
T ss_pred chhhc
Confidence 4444
No 154
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=29.49 E-value=6.3e+02 Score=26.16 Aligned_cols=104 Identities=19% Similarity=0.233 Sum_probs=61.3
Q ss_pred EEEecCCCcccccccccHHHHHHHHHHCCCe------eEEEEecCCCCCcchHHHHHH---HhhCCCCe-------EE--
Q 017312 172 VLTHCNTGSLATAGYGTALGVIRALHSEGVL------ERAYCSETRPFNQGSRLTAFE---LVHDRIPA-------TL-- 233 (373)
Q Consensus 172 ILT~~~sgslat~g~~tal~~l~~a~~~g~~------~~V~v~EsrP~~qG~rlta~~---L~~~GI~v-------tl-- 233 (373)
=.-+||||+-| .+..|+.|.+.... -.++..|.. +.|..|-+-. -...|+|. ..
T Consensus 118 rvff~nsGTeA------ne~ALK~Ark~~~~~~~~~~t~~Iaf~ns--yHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ 189 (433)
T KOG1401|consen 118 RVFFCNSGTEA------NETALKFARKFTGKKHPEKKTKFIAFENS--YHGRTLGALSVTGNSKYGLPFDPIAPDVVTAE 189 (433)
T ss_pred EEEEecCCcHH------HHHHHHHHHHhhcccCCccceeEEEEecC--cCCcchhHHHhhcccccCCCCCCCCCceeecc
Confidence 34589997432 35677777664332 247777753 4455443322 22455532 11
Q ss_pred Ecch-HHHHHHHcCC--CCEEEEcceeEecCCCeecccchHHHHH--HHHhCCCeEE
Q 017312 234 IADS-AAAALMKDGR--VSAVIVGADRVAANGDTANKIGTYSLAL--CAKFHNILFY 285 (373)
Q Consensus 234 I~Ds-a~~~~m~~~~--vd~VivGAd~I~~nG~v~nkiGT~~lA~--~Ak~~~vPvy 285 (373)
-.|+ ++--+++.++ |-+|||-. |.-+|++.---=-++..+ +|+.++|+|+
T Consensus 190 ynd~t~l~k~~~~h~~~IaAVIvEP--iqGaGG~~p~~peFl~~L~k~C~~~~vl~I 244 (433)
T KOG1401|consen 190 YNDSTALEKLFESHKGEIAAVIVEP--IQGAGGIIPADPEFLIGLRKECDDNGVLLI 244 (433)
T ss_pred cCCHHHHHHHHHhCCCceEEEEEec--ccCCCCcccCCHHHHHHHHHHHhhcCceEE
Confidence 1232 2344454444 88888865 667888876666666554 8999999998
No 155
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=29.41 E-value=1.9e+02 Score=27.53 Aligned_cols=36 Identities=19% Similarity=0.064 Sum_probs=22.7
Q ss_pred HHHHhhCCCCeEEEcch-HHHHHHHcCCCCEEEEcce
Q 017312 221 AFELVHDRIPATLIADS-AAAALMKDGRVSAVIVGAD 256 (373)
Q Consensus 221 a~~L~~~GI~vtlI~Ds-a~~~~m~~~~vd~VivGAd 256 (373)
.+.|.+.|+++.+|..+ -....++..++|.|+...+
T Consensus 29 ~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~ 65 (304)
T PRK01372 29 LAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALH 65 (304)
T ss_pred HHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecC
Confidence 55678888888777432 3333444567888887643
No 156
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=29.34 E-value=1.9e+02 Score=29.44 Aligned_cols=68 Identities=16% Similarity=0.145 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHCCCeeEEEEecCCCC--CcchHHHHHHHhhCCCCe-------EEEcchHHHHHHHcCCCCEEEEcceeE
Q 017312 188 TALGVIRALHSEGVLERAYCSETRPF--NQGSRLTAFELVHDRIPA-------TLIADSAAAALMKDGRVSAVIVGADRV 258 (373)
Q Consensus 188 tal~~l~~a~~~g~~~~V~v~EsrP~--~qG~rlta~~L~~~GI~v-------tlI~Dsa~~~~m~~~~vd~VivGAd~I 258 (373)
.+..+++.|++.|.+ |+++.+.|. ..+.+ +++.-+.+ .|..-..+-.+-++.++|.|+-|.+-.
T Consensus 13 ~a~~i~~aa~~~G~~--vv~~~~~~d~~a~~~~-----~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p~~~~~ 85 (451)
T PRK08591 13 IALRIIRACKELGIK--TVAVHSTADRDALHVQ-----LADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHPGYGFL 85 (451)
T ss_pred HHHHHHHHHHHcCCe--EEEEcChhhccCCCHh-----HCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEECCCcc
Confidence 367788999988754 444433332 22322 22211110 122212333344457899999887655
Q ss_pred ecCC
Q 017312 259 AANG 262 (373)
Q Consensus 259 ~~nG 262 (373)
..++
T Consensus 86 ~e~~ 89 (451)
T PRK08591 86 SENA 89 (451)
T ss_pred ccCH
Confidence 5554
No 157
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=29.33 E-value=3e+02 Score=28.51 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=48.8
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEE-----cchHHHHHHHcCCCCEEEE-cceeEecCCC
Q 017312 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI-----ADSAAAALMKDGRVSAVIV-GADRVAANGD 263 (373)
Q Consensus 190 l~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI-----~Dsa~~~~m~~~~vd~Viv-GAd~I~~nG~ 263 (373)
.++++.+.++|.+...+-+ -|..--. .+--.-.|.++..+ ....+-..+.+...|.+|| |+=.++ +|
T Consensus 20 ~gl~~~l~~~g~~v~~~K~--Gpd~iD~---~~~~~~~g~~~~nld~~~~~~~~i~~~~~~~~~d~~vIEG~gGl~-dg- 92 (433)
T PRK13896 20 LATIRALEDAGYAVQPAKA--GPDFIDP---SHHEAVAGRPSRTLDPWLSGEDGMRRNYYRGEGDICVVEGVMGLY-DG- 92 (433)
T ss_pred HHHHHHHHHCCCeeEEEee--CCCCCCH---HHHHHHhCCCcccCChhhCCHHHHHHHHHhhcCCEEEEECCCccc-cC-
Confidence 4566777777766555543 4432111 11112234554322 1222222233345777665 665554 33
Q ss_pred eecccchHHHHHHHHhCCCeEEEeccCc
Q 017312 264 TANKIGTYSLALCAKFHNILFYVAAPLT 291 (373)
Q Consensus 264 v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (373)
+.+..|-+||..+.||++++...
T Consensus 93 -----~~~s~adla~~l~~PviLVv~~~ 115 (433)
T PRK13896 93 -----DVSSTAMVAEALDLPVVLVVDAK 115 (433)
T ss_pred -----CCCCHHHHHHHHCCCEEEEEcCc
Confidence 23568899999999999987654
No 158
>PRK05414 urocanate hydratase; Provisional
Probab=29.29 E-value=4e+02 Score=28.40 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhCCCCccc-HHHHHHHHHHHHHHH
Q 017312 85 DAASFLGNKLEYLVSSRPTAVN-LSDAAAKLKEIISKA 121 (373)
Q Consensus 85 el~~~l~~~~~~L~~~RPtav~-l~nai~~~~~~i~~~ 121 (373)
+|.+.|..+.+...+-+|.++. ++|+.+.+.+.+++.
T Consensus 218 ~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~ 255 (556)
T PRK05414 218 DLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRG 255 (556)
T ss_pred CHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcC
Confidence 4556666666777888999986 899999988887765
No 159
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.19 E-value=3.2e+02 Score=27.66 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=31.7
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcce
Q 017312 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGAD 256 (373)
Q Consensus 190 l~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd 256 (373)
..+-+.+.+.|.. |.+.+..+...=.+. ..+|.+.|+.+ +........+ ++.|.|++++.
T Consensus 18 ~~~A~~l~~~G~~--V~~~d~~~~~~~~~~-~~~l~~~~~~~--~~~~~~~~~~--~~~d~vv~~~g 77 (450)
T PRK14106 18 LALAKFLKKLGAK--VILTDEKEEDQLKEA-LEELGELGIEL--VLGEYPEEFL--EGVDLVVVSPG 77 (450)
T ss_pred HHHHHHHHHCCCE--EEEEeCCchHHHHHH-HHHHHhcCCEE--EeCCcchhHh--hcCCEEEECCC
Confidence 3445666667764 555555432111111 34577778763 3222222345 78999988764
No 160
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=29.01 E-value=2.5e+02 Score=26.53 Aligned_cols=80 Identities=14% Similarity=0.031 Sum_probs=0.0
Q ss_pred EEEEecCCCCCcchHHHHHHHhhCCCCeEEEcch----HHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHh
Q 017312 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADS----AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF 279 (373)
Q Consensus 204 ~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Ds----a~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~ 279 (373)
+||+.=.+.-..=++.+++.|...|+++....|. .....| ++=|.+|+ +.-.|..-. +..++-.||.
T Consensus 130 ~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~--~~~Dv~I~----iS~sg~~~~---~~~~~~~ak~ 200 (278)
T PRK11557 130 RIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQAL--SPDDLLLA----ISYSGERRE---LNLAADEALR 200 (278)
T ss_pred eEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhC--CCCCEEEE----EcCCCCCHH---HHHHHHHHHH
Q ss_pred CCCeEEEeccCcc
Q 017312 280 HNILFYVAAPLTS 292 (373)
Q Consensus 280 ~~vPvyV~a~~~k 292 (373)
+|+|+++++....
T Consensus 201 ~ga~iI~IT~~~~ 213 (278)
T PRK11557 201 VGAKVLAITGFTP 213 (278)
T ss_pred cCCCEEEEcCCCC
No 161
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=28.97 E-value=1.6e+02 Score=27.49 Aligned_cols=26 Identities=19% Similarity=0.108 Sum_probs=20.5
Q ss_pred ecccchHHHHHHHHhCCCeEEEeccC
Q 017312 265 ANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
.|-.||..++-+|+.+++.|+.++..
T Consensus 76 ~n~~~~~~l~~~~~~~~~~~v~~Ss~ 101 (287)
T TIGR01214 76 VNALAPQNLARAAARHGARLVHISTD 101 (287)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEeee
Confidence 46678999999999988888776544
No 162
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=28.87 E-value=3.8e+02 Score=27.25 Aligned_cols=50 Identities=26% Similarity=0.289 Sum_probs=40.1
Q ss_pred EcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEec
Q 017312 234 IADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (373)
Q Consensus 234 I~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (373)
.+-.++.++|+.+++ .-|++..=|+|..-+|+-.---++++|++|++|..
T Consensus 176 l~PPa~~~ll~~~~~-----~idgfi~PGHVs~I~G~~~y~~l~~~y~~P~VVaG 225 (369)
T TIGR00075 176 LVPPAVEALLENPAV-----QIDAFLAPGHVSTIIGAKPYAPIAEKYKIPIVIAG 225 (369)
T ss_pred ccHHHHHHHHcCCCC-----CccEEEecCEEEEEeccchhHHHHHHcCCCeEEec
Confidence 345677888855532 23778888999999999999999999999999853
No 163
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=28.86 E-value=4.3e+02 Score=28.04 Aligned_cols=88 Identities=15% Similarity=0.167 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCccc-HHHHHHHHHHHHHHHhhc-------------------cCCHHHHHHHHHHHHHHHH
Q 017312 84 ADAASFLGNKLEYLVSSRPTAVN-LSDAAAKLKEIISKAAAT-------------------ASEANSVFQAYIEAAEIML 143 (373)
Q Consensus 84 ~el~~~l~~~~~~L~~~RPtav~-l~nai~~~~~~i~~~~~~-------------------~~~~~e~~~~l~~~~~~~~ 143 (373)
.++.+.|..+.+...+-+|.++. ++|+.+.+.+.+++.... ..+.+|..+...+.-+.|.
T Consensus 208 ~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ee~~~lr~~dp~~~~ 287 (545)
T TIGR01228 208 DSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVEDADKLRQEEPEAYV 287 (545)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHHHHHHHHHhCHHHHH
Confidence 34556667777778888999986 899999988888754211 1245555554444444443
Q ss_pred HHHHHHHHHHHHHHHH--HhHhhhcCCCcEEEEecCC
Q 017312 144 KDDVATNKAIGSYGAS--FLQNQLKNSKFSVLTHCNT 178 (373)
Q Consensus 144 ~e~~~a~~~I~~~g~~--~i~~~~~~~~~~ILT~~~s 178 (373)
+.. .+.+..|... .+++ .|..+.-|+|+
T Consensus 288 ~~~---~~Sm~rhv~Am~~~~~----~Ga~~fDYGN~ 317 (545)
T TIGR01228 288 KAA---KQSMAKHVRAMLAFQK----QGSVTFDYGNN 317 (545)
T ss_pred HHH---HHHHHHHHHHHHHHHH----CCCeeeeccHH
Confidence 332 3333333322 2222 67777777764
No 164
>PRK05967 cystathionine beta-lyase; Provisional
Probab=28.85 E-value=2.7e+02 Score=28.38 Aligned_cols=82 Identities=16% Similarity=0.084 Sum_probs=46.8
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHH-HHHHHhhCCCCeEEEcc---hHHHHHHHcCCCCEEEEcceeEecCCCeecc
Q 017312 192 VIRALHSEGVLERAYCSETRPFNQGSRL-TAFELVHDRIPATLIAD---SAAAALMKDGRVSAVIVGADRVAANGDTANK 267 (373)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rl-ta~~L~~~GI~vtlI~D---sa~~~~m~~~~vd~VivGAd~I~~nG~v~nk 267 (373)
++....+.|. +|++. .|.+.|.+. ....+...|+.++++.. ..+...++ ++...|++-. ..|.
T Consensus 95 ~l~all~~GD--~Vlv~--~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~-~~TklV~les--------PsNP 161 (395)
T PRK05967 95 PFLGFLSPGD--HALIV--DSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMR-PNTKVVHTEA--------PGSN 161 (395)
T ss_pred HHHHhcCCCC--EEEEc--cCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcC-cCceEEEEEC--------CCCC
Confidence 3444444554 56655 566766543 22346788999998853 23444442 3444443322 1133
Q ss_pred cch----HHHHHHHHhCCCeEEE
Q 017312 268 IGT----YSLALCAKFHNILFYV 286 (373)
Q Consensus 268 iGT----~~lA~~Ak~~~vPvyV 286 (373)
.|+ -.++-+||++|++++|
T Consensus 162 ~l~v~dl~~I~~la~~~g~~vvV 184 (395)
T PRK05967 162 TFEMQDIPAIAEAAHRHGAIVMM 184 (395)
T ss_pred CCcHHHHHHHHHHHHHhCCEEEE
Confidence 333 4577789999998887
No 165
>PLN02206 UDP-glucuronate decarboxylase
Probab=28.85 E-value=2e+02 Score=29.66 Aligned_cols=109 Identities=14% Similarity=0.116 Sum_probs=56.0
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCC
Q 017312 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGR 247 (373)
Q Consensus 168 ~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~ 247 (373)
.+.+||.-+-+|-+ | -.+++.+.++|. +|+++...+.....++. ..+. ...+.++.-...-..+ .+
T Consensus 118 ~~~kILVTGatGfI-----G--s~Lv~~Ll~~G~--~V~~ld~~~~~~~~~~~-~~~~--~~~~~~i~~D~~~~~l--~~ 183 (442)
T PLN02206 118 KGLRVVVTGGAGFV-----G--SHLVDRLMARGD--SVIVVDNFFTGRKENVM-HHFS--NPNFELIRHDVVEPIL--LE 183 (442)
T ss_pred CCCEEEEECcccHH-----H--HHHHHHHHHCcC--EEEEEeCCCccchhhhh-hhcc--CCceEEEECCccChhh--cC
Confidence 34667766655433 1 224455555664 56655432211111111 1111 2234444211122234 57
Q ss_pred CCEEEEcceeEecCCC--------eecccchHHHHHHHHhCCCeEEEeccC
Q 017312 248 VSAVIVGADRVAANGD--------TANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 248 vd~VivGAd~I~~nG~--------v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
+|.||=-|-....... -.|-.||..+.-+|+.++++|+.+...
T Consensus 184 ~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~ 234 (442)
T PLN02206 184 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 234 (442)
T ss_pred CCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCh
Confidence 8988876643211111 167889999999999999987766544
No 166
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=28.76 E-value=6.3e+02 Score=25.64 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=26.0
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCC
Q 017312 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFN 214 (373)
Q Consensus 171 ~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~ 214 (373)
.|..++-=|+..-.|++- |.++.+.|.++.++|.++.+|.
T Consensus 153 ~v~v~gGDG~~ydIG~~~----l~ha~~r~~ni~~iv~DNe~Y~ 192 (365)
T cd03377 153 SVWIIGGDGWAYDIGYGG----LDHVLASGENVNILVLDTEVYS 192 (365)
T ss_pred ceEEEecchhhhccchhh----HHHHHHcCCCeEEEEECCcccc
Confidence 444444345444444443 4455667999999999999985
No 167
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=28.40 E-value=1.3e+02 Score=30.35 Aligned_cols=102 Identities=14% Similarity=0.101 Sum_probs=68.9
Q ss_pred ccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHH---HHHHHh-hC-CCCeEEEcchH--HHHHHHcCCCCEEEEccee
Q 017312 185 GYGTALGVIRALHSEGVLERAYCSETRPFNQGSRL---TAFELV-HD-RIPATLIADSA--AAALMKDGRVSAVIVGADR 257 (373)
Q Consensus 185 g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rl---ta~~L~-~~-GI~vtlI~Dsa--~~~~m~~~~vd~VivGAd~ 257 (373)
.+-++.++++.|.+.+...-+=+.++.=.+-|... +.+.++ +. .+||.+-.|-+ ...++ .-++ .|-.+
T Consensus 25 n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~--~Ai~---~GFtS 99 (347)
T TIGR01521 25 NMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQ--RAIQ---LGFTS 99 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHH--HHHH---cCCCE
Confidence 34678889999988776655544443212224332 233344 34 39999999987 44444 3333 48899
Q ss_pred EecCCCee-----------cccchHHHHHHHHhCCCeEEEeccCccc
Q 017312 258 VAANGDTA-----------NKIGTYSLALCAKFHNILFYVAAPLTSI 293 (373)
Q Consensus 258 I~~nG~v~-----------nkiGT~~lA~~Ak~~~vPvyV~a~~~k~ 293 (373)
|+-||+-. |--=|-.++-.||.+|++|= +|.-.+
T Consensus 100 VMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVE--aELG~i 144 (347)
T TIGR01521 100 VMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVE--GELGCL 144 (347)
T ss_pred EeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE--EEeeec
Confidence 99999987 88889999999999999854 454444
No 168
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=28.16 E-value=2.3e+02 Score=30.58 Aligned_cols=50 Identities=16% Similarity=0.204 Sum_probs=30.4
Q ss_pred HHHHHHcCCCCEEEEcceeEecC-----C-CeecccchHHHHHHHHhCCCeEEEeccC
Q 017312 239 AAALMKDGRVSAVIVGADRVAAN-----G-DTANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 239 ~~~~m~~~~vd~VivGAd~I~~n-----G-~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
+...+ +++|.||..|-..-.+ + .-+|-.|+..+.-+|+.+|+.-+|...+
T Consensus 153 I~~aL--ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSS 208 (576)
T PLN03209 153 IGPAL--GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTS 208 (576)
T ss_pred HHHHh--cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 44456 7889887654221100 0 1136678999988888888765555443
No 169
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=28.15 E-value=3.2e+02 Score=25.68 Aligned_cols=85 Identities=18% Similarity=0.167 Sum_probs=52.8
Q ss_pred ccHHHHHHHHHHCCCeeEEEEecCCCCCcch---HHHHHHHhhCCCCeEE-EcchHHHHHHHcCCCCEEEEcceeEecCC
Q 017312 187 GTALGVIRALHSEGVLERAYCSETRPFNQGS---RLTAFELVHDRIPATL-IADSAAAALMKDGRVSAVIVGADRVAANG 262 (373)
Q Consensus 187 ~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~---rlta~~L~~~GI~vtl-I~Dsa~~~~m~~~~vd~VivGAd~I~~nG 262 (373)
...+.+|..+.+.....+++|-+ -|...+. ++.. ++.. ...+.+ ..+.....+| ..+|.|++ -|
T Consensus 140 ~~~~~~l~~~~~~~p~~~lvvK~-HP~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~Ll--~~s~~Vvt------in- 207 (269)
T PF05159_consen 140 ADFLDMLESFAKENPDAKLVVKP-HPDERGGNKYSYLE-ELPN-LPNVVIIDDDVNLYELL--EQSDAVVT------IN- 207 (269)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEE-CchhhCCCChhHhh-hhhc-CCCeEEECCCCCHHHHH--HhCCEEEE------EC-
Confidence 45677887777666567776655 5642221 2211 2222 344444 4566678888 88888853 23
Q ss_pred CeecccchHHHHHHHHhCCCeEEEeccCc
Q 017312 263 DTANKIGTYSLALCAKFHNILFYVAAPLT 291 (373)
Q Consensus 263 ~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (373)
.++++=|-.+|+||+++..++
T Consensus 208 --------StvGlEAll~gkpVi~~G~~~ 228 (269)
T PF05159_consen 208 --------STVGLEALLHGKPVIVFGRAF 228 (269)
T ss_pred --------CHHHHHHHHcCCceEEecCcc
Confidence 346678888999999987654
No 170
>PRK05634 nucleosidase; Provisional
Probab=28.12 E-value=47 Score=30.09 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=21.1
Q ss_pred CeecccchHHHHHHHHhCCCeEEEe
Q 017312 263 DTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 263 ~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
..+-..=++.+|.+|+.+||||+++
T Consensus 127 a~~vDME~aAva~va~~~~vPf~~i 151 (185)
T PRK05634 127 ADLVDMEGYAVAAVAAEFGVPCRLV 151 (185)
T ss_pred CeEEecHHHHHHHHHHHhCCCEEEE
Confidence 3455677899999999999999986
No 171
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=28.04 E-value=58 Score=31.25 Aligned_cols=98 Identities=17% Similarity=0.017 Sum_probs=53.7
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCE
Q 017312 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSA 250 (373)
Q Consensus 171 ~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~ 250 (373)
+||..+.+| .+-+.|..+.++ +.+.|+.+ +|+...-.. ...+..++++.+.|.
T Consensus 2 riLI~GasG--------~lG~~l~~~l~~-~~~~v~~~-~r~~~dl~d-----------------~~~~~~~~~~~~pd~ 54 (286)
T PF04321_consen 2 RILITGASG--------FLGSALARALKE-RGYEVIAT-SRSDLDLTD-----------------PEAVAKLLEAFKPDV 54 (286)
T ss_dssp EEEEETTTS--------HHHHHHHHHHTT-TSEEEEEE-STTCS-TTS-----------------HHHHHHHHHHH--SE
T ss_pred EEEEECCCC--------HHHHHHHHHHhh-CCCEEEEe-CchhcCCCC-----------------HHHHHHHHHHhCCCe
Confidence 466665554 443444443332 45778877 666332111 123445555567888
Q ss_pred EEEcceeEe-----cC---CCeecccchHHHHHHHHhCCCeEEEeccCccccC
Q 017312 251 VIVGADRVA-----AN---GDTANKIGTYSLALCAKFHNILFYVAAPLTSIDL 295 (373)
Q Consensus 251 VivGAd~I~-----~n---G~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~~ 295 (373)
||--|--.- .| -.-+|-.|+..+|-+|+.+|++++-++..+=|+-
T Consensus 55 Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG 107 (286)
T PF04321_consen 55 VINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDG 107 (286)
T ss_dssp EEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-S
T ss_pred EeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcC
Confidence 776652111 11 2247889999999999999999998877666654
No 172
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=27.96 E-value=19 Score=34.35 Aligned_cols=83 Identities=20% Similarity=0.175 Sum_probs=38.9
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEc----chH---HHHHHHcCCCCEEEEcceeEec-CCCeecccchHH
Q 017312 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA----DSA---AAALMKDGRVSAVIVGADRVAA-NGDTANKIGTYS 272 (373)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~----Dsa---~~~~m~~~~vd~VivGAd~I~~-nG~v~nkiGT~~ 272 (373)
++.-|+..+.--...|.++ ...|.+.|+++..+. +.. +..+. ..+. -.++|.|.. -|+.+|.+.=|
T Consensus 20 ~~~lvv~d~~t~~~~g~~v-~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~~~~--~~~~d~ii~vGgG~i~D~~K~- 93 (250)
T PF13685_consen 20 KKVLVVTDENTYKAAGEKV-EESLKSAGIEVAVIEEFVGDADEDEVEKLV--EALR--PKDADLIIGVGGGTIIDIAKY- 93 (250)
T ss_dssp SEEEEEEETTHHHHHHHHH-HHHHHTTT-EEEEEE-EE---BHHHHHHHH--TTS----TT--EEEEEESHHHHHHHHH-
T ss_pred CcEEEEEcCCHHHHHHHHH-HHHHHHcCCeEEEEecCCCCCCHHHHHHHH--HHhc--ccCCCEEEEeCCcHHHHHHHH-
Confidence 3333444443222235554 446778888887553 222 22223 1110 124444444 56677777664
Q ss_pred HHHHHHhCCCeEEEeccCcc
Q 017312 273 LALCAKFHNILFYVAAPLTS 292 (373)
Q Consensus 273 lA~~Ak~~~vPvyV~a~~~k 292 (373)
+|.+.++||+.+...-.
T Consensus 94 ---~A~~~~~p~isVPTa~S 110 (250)
T PF13685_consen 94 ---AAFELGIPFISVPTAAS 110 (250)
T ss_dssp ---HHHHHT--EEEEES--S
T ss_pred ---HHHhcCCCEEEeccccc
Confidence 58888999998854433
No 173
>PRK05839 hypothetical protein; Provisional
Probab=27.85 E-value=6e+02 Score=25.04 Aligned_cols=70 Identities=19% Similarity=0.144 Sum_probs=38.4
Q ss_pred EEEecCCCCCcchHHHHHHHhhCCCCeEEEcchH-HHHHH-----HcCCCCEEEEcceeEecCCCeecccch-------H
Q 017312 205 AYCSETRPFNQGSRLTAFELVHDRIPATLIADSA-AAALM-----KDGRVSAVIVGADRVAANGDTANKIGT-------Y 271 (373)
Q Consensus 205 V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa-~~~~m-----~~~~vd~VivGAd~I~~nG~v~nkiGT-------~ 271 (373)
.++++ .|.+.+... .+...|+++..++... -++.+ ...++..|++ + .--|..|+ .
T Consensus 111 ~vlv~-~P~y~~~~~---~~~~~g~~v~~v~~~~~~~~~~d~~~~~~~~~k~v~i-------~-nP~NPTG~~~s~~~l~ 178 (374)
T PRK05839 111 TIAYP-NPFYQIYEG---AAIASRAKVLLMPLTKENDFTPSLNEKELQEVDLVIL-------N-SPNNPTGRTLSLEELI 178 (374)
T ss_pred EEEEC-CCCchhhHH---HHHhcCCEEEEeecccccCCcCCcchhhhccccEEEE-------e-CCCCCcCcccCHHHHH
Confidence 44444 477766543 2456788877775431 11111 0133444433 3 33455555 4
Q ss_pred HHHHHHHhCCCeEEE
Q 017312 272 SLALCAKFHNILFYV 286 (373)
Q Consensus 272 ~lA~~Ak~~~vPvyV 286 (373)
.++-.|++||+++++
T Consensus 179 ~i~~~~~~~~~~ii~ 193 (374)
T PRK05839 179 EWVKLALKHDFILIN 193 (374)
T ss_pred HHHHHHHHcCCEEEe
Confidence 566778999998885
No 174
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=27.73 E-value=3.2e+02 Score=21.80 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=37.5
Q ss_pred HHhhCCCCeEEEcch----HHHHHHHcCCCCEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCeEEEe
Q 017312 223 ELVHDRIPATLIADS----AAAALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 223 ~L~~~GI~vtlI~Ds----a~~~~m~~~~vd~VivGAd~I~~nG~v~n-kiGT~~lA~~Ak~~~vPvyV~ 287 (373)
.+.+.|+++..+.+. ++..+.++.++|.+++|+++= |..-. -.|+-.--++-+.-++|+.|+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~dllviG~~~~---~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 57 LAEELGAEVVTLPGDDVAEAIVEFAREHNVTQIVVGKSRR---SRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred HHHHcCCEEEEEeCCcHHHHHHHHHHHcCCCEEEeCCCCC---chHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 345678877665442 344445568899999999864 22322 345444344333348998886
No 175
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=27.57 E-value=1.4e+02 Score=29.16 Aligned_cols=96 Identities=11% Similarity=-0.017 Sum_probs=66.6
Q ss_pred cccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHH---HHH-HhhCCCCeEEEcchH--HHHHHHcCCCCEEEEcceeEe
Q 017312 186 YGTALGVIRALHSEGVLERAYCSETRPFNQGSRLT---AFE-LVHDRIPATLIADSA--AAALMKDGRVSAVIVGADRVA 259 (373)
Q Consensus 186 ~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlt---a~~-L~~~GI~vtlI~Dsa--~~~~m~~~~vd~VivGAd~I~ 259 (373)
+-++.++++.|.+.+..+-+=+.++.=.+.|.... ++. ..+..+||.+-.|-+ .-.++ .-++ .|-.+|.
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~i~--~Ai~---~GftSVM 102 (284)
T PRK09195 28 LETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDHHEKFDDIA--QKVR---SGVRSVM 102 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH--HHHH---cCCCEEE
Confidence 46788999999888766555554433222343322 222 236789999999987 44444 3333 4888999
Q ss_pred cCCCee----cccchHHHHHHHHhCCCeEEE
Q 017312 260 ANGDTA----NKIGTYSLALCAKFHNILFYV 286 (373)
Q Consensus 260 ~nG~v~----nkiGT~~lA~~Ak~~~vPvyV 286 (373)
-||+-. |-.=|..++-.||.+|++|=.
T Consensus 103 ~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEa 133 (284)
T PRK09195 103 IDGSHLPFAQNISLVKEVVDFCHRFDVSVEA 133 (284)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999875 778899999999999998754
No 176
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=27.49 E-value=2.2e+02 Score=26.30 Aligned_cols=37 Identities=19% Similarity=-0.045 Sum_probs=26.6
Q ss_pred CCCCEEEEcceeEecCCCe----------ecccchHHHHHHHHhCCC
Q 017312 246 GRVSAVIVGADRVAANGDT----------ANKIGTYSLALCAKFHNI 282 (373)
Q Consensus 246 ~~vd~VivGAd~I~~nG~v----------~nkiGT~~lA~~Ak~~~v 282 (373)
.++|.|+--|-....+++. .|-.||..+.-+|+++++
T Consensus 56 ~~~D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~ 102 (292)
T TIGR01777 56 EGADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQ 102 (292)
T ss_pred CCCCEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCC
Confidence 6799888766433222321 378899999999999987
No 177
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=27.41 E-value=91 Score=28.95 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=56.9
Q ss_pred ecCCCccccccc-ccHHHHHHHHHHCCCe-----eEEEEecCCCCCcch--HHHHHHHhhCCCCeEEEcchHHH-----H
Q 017312 175 HCNTGSLATAGY-GTALGVIRALHSEGVL-----ERAYCSETRPFNQGS--RLTAFELVHDRIPATLIADSAAA-----A 241 (373)
Q Consensus 175 ~~~sgslat~g~-~tal~~l~~a~~~g~~-----~~V~v~EsrP~~qG~--rlta~~L~~~GI~vtlI~Dsa~~-----~ 241 (373)
.|+++++...|. -|+..++..+.+...- =-|.+.=+-|..|-. .-..+.+.+.||.+.+-|..... .
T Consensus 6 ~C~~~a~~~~g~~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~ 85 (213)
T PRK10076 6 ECPSGAFERIGRDITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLP 85 (213)
T ss_pred hchhhHHHhcCcccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHH
Confidence 377888877665 3578888877654211 258888899998853 11245677899999988876543 4
Q ss_pred HHHcCCCCEEEEcceeE
Q 017312 242 LMKDGRVSAVIVGADRV 258 (373)
Q Consensus 242 ~m~~~~vd~VivGAd~I 258 (373)
++ +-+|.|++--..+
T Consensus 86 l~--~~~D~~l~DiK~~ 100 (213)
T PRK10076 86 LA--KLCDEVLFDLKIM 100 (213)
T ss_pred HH--HhcCEEEEeeccC
Confidence 67 7899988766554
No 178
>cd00555 Maf Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins.
Probab=27.33 E-value=4.6e+02 Score=23.56 Aligned_cols=79 Identities=19% Similarity=0.157 Sum_probs=47.8
Q ss_pred CCCeeEEE---EecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEec-CCCeecccchHHHH
Q 017312 199 EGVLERAY---CSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAA-NGDTANKIGTYSLA 274 (373)
Q Consensus 199 ~g~~~~V~---v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~-nG~v~nkiGT~~lA 274 (373)
.|..|.++ +.|+.+..+...-.+..|+... +-.+.++..-+.+++|||.|+. ||.++.|=.+..-|
T Consensus 17 ~g~~f~~~~~~iDE~~~~~~~p~~~v~~lA~~K----------a~~v~~~~~~~~liI~aDtvv~~~g~il~KP~~~~eA 86 (180)
T cd00555 17 LGIPFEVVPSDIDETPIKGESPEDYVLRLAEAK----------AEAVAARLPPDALVIGADTVVVLDGRILGKPKDREEA 86 (180)
T ss_pred CCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHH----------HHHHHHhCCCCCEEEEecEEEEECCEEEcCCCCHHHH
Confidence 47888887 4465554433222344444321 1122211112679999999875 88899999998876
Q ss_pred --HHHHhCCCeEEEe
Q 017312 275 --LCAKFHNILFYVA 287 (373)
Q Consensus 275 --~~Ak~~~vPvyV~ 287 (373)
++-...|.+.-|.
T Consensus 87 ~~~L~~lsg~~h~v~ 101 (180)
T cd00555 87 REMLKRLSGRTHEVY 101 (180)
T ss_pred HHHHHHHcCCCcEEE
Confidence 4566667665554
No 179
>PRK05443 polyphosphate kinase; Provisional
Probab=27.33 E-value=1.1e+02 Score=33.76 Aligned_cols=48 Identities=8% Similarity=0.003 Sum_probs=33.6
Q ss_pred ccHHHHHHHHHHCCCeeEEEEecCCCCCcch-HHHHHHHhhCCCCeEEE
Q 017312 187 GTALGVIRALHSEGVLERAYCSETRPFNQGS-RLTAFELVHDRIPATLI 234 (373)
Q Consensus 187 ~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~-rlta~~L~~~GI~vtlI 234 (373)
+.+...|..|.++|+..+|++--..++.+-. .-.+++|.++|+.|.|-
T Consensus 380 s~iv~aL~~Aa~~Gk~V~vlve~karfde~~n~~~~~~L~~aGv~V~y~ 428 (691)
T PRK05443 380 SPIVDALIEAAENGKQVTVLVELKARFDEEANIRWARRLEEAGVHVVYG 428 (691)
T ss_pred HHHHHHHHHHHHcCCEEEEEEccCccccHHHHHHHHHHHHHcCCEEEEc
Confidence 5677778888888999888876655554422 22366788999998763
No 180
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=27.29 E-value=4.2e+02 Score=23.13 Aligned_cols=32 Identities=6% Similarity=-0.041 Sum_probs=23.1
Q ss_pred HHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEc
Q 017312 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIVG 254 (373)
Q Consensus 221 a~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivG 254 (373)
++.+++.|+++..|+++.-+.+- +.+|.+|.-
T Consensus 121 ~~~ak~~Ga~vI~IT~~~~s~La--~~aD~~l~~ 152 (177)
T cd05006 121 LEAAKERGMKTIALTGRDGGKLL--ELADIEIHV 152 (177)
T ss_pred HHHHHHCCCEEEEEeCCCCCchh--hhCCEEEEe
Confidence 55677889999999887666655 667766653
No 181
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=27.05 E-value=4.3e+02 Score=28.09 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCccc-HHHHHHHHHHHHHHH
Q 017312 84 ADAASFLGNKLEYLVSSRPTAVN-LSDAAAKLKEIISKA 121 (373)
Q Consensus 84 ~el~~~l~~~~~~L~~~RPtav~-l~nai~~~~~~i~~~ 121 (373)
.++.+.|+.+.+...+-+|.++. ++|+++.+.+.+++.
T Consensus 207 ~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~ 245 (546)
T PF01175_consen 207 DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERG 245 (546)
T ss_dssp SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcC
Confidence 34556677777778899999986 899999998887765
No 182
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=27.05 E-value=4.4e+02 Score=26.72 Aligned_cols=49 Identities=29% Similarity=0.287 Sum_probs=40.1
Q ss_pred cchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEec
Q 017312 235 ADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (373)
Q Consensus 235 ~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (373)
+-.++.++++.+.. .-|++..=|+|..-+|+-.-.-++++|++|+.|..
T Consensus 171 ~PPa~~~ll~~~~~-----~idgfi~PGHVstI~G~~~y~~l~~~y~~P~VVaG 219 (364)
T PRK15062 171 VPPAMRALLEDPEL-----RIDGFIAPGHVSTIIGTEPYEFLAEEYGIPVVVAG 219 (364)
T ss_pred cHHHHHHHHcCCCC-----CccEEEecCEeEEEeccchhHHHHHHcCCCeEEec
Confidence 45577888855543 55777888999999999999999999999999863
No 183
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=26.98 E-value=5.9e+02 Score=25.98 Aligned_cols=85 Identities=25% Similarity=0.318 Sum_probs=45.8
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchH-HHHHHHhhCCCCeEEEc--c-hHHHHHHHcCCCCEEEEcceeE-ecCCCeec
Q 017312 192 VIRALHSEGVLERAYCSETRPFNQGSR-LTAFELVHDRIPATLIA--D-SAAAALMKDGRVSAVIVGADRV-AANGDTAN 266 (373)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~r-lta~~L~~~GI~vtlI~--D-sa~~~~m~~~~vd~VivGAd~I-~~nG~v~n 266 (373)
++..+.+.|. +|++.+ |.+.|.. +....+...|+++.++. | ..+...++ ++...|++ +.+ -+.|.+..
T Consensus 89 al~al~~~Gd--~Vl~~~--~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le~ai~-~~tklV~l--esp~NPtG~v~d 161 (425)
T PRK06084 89 AIQTIAEAGD--NIVSVA--KLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALID-ERTKAVFC--ESIGNPAGNIID 161 (425)
T ss_pred HHHHHhCCCC--EEEEeC--CCcchHHHHHHHhcccceeEEEEECCCCHHHHHHHhc-cCCcEEEE--eCCCCCCCeecC
Confidence 4444444454 455543 4444432 22333445688887764 2 23334442 45666655 222 23454444
Q ss_pred ccchHHHHHHHHhCCCeEEE
Q 017312 267 KIGTYSLALCAKFHNILFYV 286 (373)
Q Consensus 267 kiGT~~lA~~Ak~~~vPvyV 286 (373)
-..++-+|++++++++|
T Consensus 162 ---l~~I~~la~~~~i~vVv 178 (425)
T PRK06084 162 ---IQALADAAHRHGVPLIV 178 (425)
T ss_pred ---HHHHHHHHHHcCCEEEE
Confidence 36677889999998886
No 184
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=26.92 E-value=5.1e+02 Score=26.28 Aligned_cols=89 Identities=17% Similarity=0.157 Sum_probs=47.7
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchH-HHHHHHhhCCCCeEEEcc---hHHHHHHHcCCCCEEEEcceeEe-cCCC
Q 017312 189 ALGVIRALHSEGVLERAYCSETRPFNQGSR-LTAFELVHDRIPATLIAD---SAAAALMKDGRVSAVIVGADRVA-ANGD 263 (373)
Q Consensus 189 al~~l~~a~~~g~~~~V~v~EsrP~~qG~r-lta~~L~~~GI~vtlI~D---sa~~~~m~~~~vd~VivGAd~I~-~nG~ 263 (373)
+..++..+.+.|. +|++. .|.+.|.. +....+...|++++.+.. ..+-..+ .++...|++ +... ++|.
T Consensus 85 i~~al~~l~~~Gd--~Vl~~--~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l-~~~t~~V~l--e~p~NPtg~ 157 (418)
T TIGR01326 85 ITYAILNLAQAGD--NIVSS--SYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAI-DENTKAVFA--ETIGNPAIN 157 (418)
T ss_pred HHHHHHHHhCCCC--EEEEE--CCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhc-CcCCeEEEE--ECCCCCCCe
Confidence 3345555544554 45554 35554432 223345678999888763 2233333 245556655 2221 1233
Q ss_pred eecccchHHHHHHHHhCCCeEEEe
Q 017312 264 TANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 264 v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
+.. --.++-+||++|++++|=
T Consensus 158 v~d---l~~I~~la~~~~i~livD 178 (418)
T TIGR01326 158 VPD---IEAIAEVAHAHGVPLIVD 178 (418)
T ss_pred ecC---HHHHHHHHHHcCCEEEEE
Confidence 332 245777899999999873
No 185
>PF02589 DUF162: Uncharacterised ACR, YkgG family COG1556; InterPro: IPR003741 This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterised proteins. Lactate utilization proteins B and C are involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source. LutB probably has a role as an electron transporter during oxidation of L-lactate.; PDB: 2G40_A.
Probab=26.86 E-value=49 Score=29.50 Aligned_cols=51 Identities=18% Similarity=0.138 Sum_probs=33.8
Q ss_pred CCCCEEEEcce-eEecCCCeecccchHHHHHHHHhCCCeEEEeccCccccCCC
Q 017312 246 GRVSAVIVGAD-RVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTL 297 (373)
Q Consensus 246 ~~vd~VivGAd-~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~~~~ 297 (373)
..+|..|.||+ +|+.+|.+++.-|...- -+....-.-++++.+..|+.+..
T Consensus 83 ~~ad~gIt~a~~aIAetGtlvl~~~~~~~-r~~s~lP~~hi~vv~~~kIv~~l 134 (189)
T PF02589_consen 83 EDADVGITGANYAIAETGTLVLSSGPGNR-RAVSLLPPVHIVVVGASKIVPNL 134 (189)
T ss_dssp HH-SEEEE--SEEETTTTEEEE---TTT--GGGGTSSSEEEEEEEGGGEESSH
T ss_pred hcCCEEEECccHHHHhCCeEEEeCCCCCh-hhhhhCCCeEEEEEcHHHcCCCH
Confidence 48899999999 99999999999988776 33344445567888888887654
No 186
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=26.74 E-value=2.7e+02 Score=22.29 Aligned_cols=55 Identities=13% Similarity=0.058 Sum_probs=33.4
Q ss_pred HHhhCCCCeEEEcchHH--HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEec
Q 017312 223 ELVHDRIPATLIADSAA--AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (373)
Q Consensus 223 ~L~~~GI~vtlI~Dsa~--~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (373)
.+.+.|+++.+..-+.. .... .+.|.|++|.+--+.- -.+--.+..+|+||.+.-
T Consensus 26 ~~~~~gi~~~v~a~~~~~~~~~~--~~~Dvill~pqi~~~~---------~~i~~~~~~~~ipv~~I~ 82 (95)
T TIGR00853 26 AAEEYGVPVKIAAGSYGAAGEKL--DDADVVLLAPQVAYML---------PDLKKETDKKGIPVEVIN 82 (95)
T ss_pred HHHHCCCcEEEEEecHHHHHhhc--CCCCEEEECchHHHHH---------HHHHHHhhhcCCCEEEeC
Confidence 35566776665554443 2344 7889888887654321 123344677889999863
No 187
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=26.71 E-value=1.6e+02 Score=22.89 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=9.8
Q ss_pred CCcEEEEecCCCc
Q 017312 168 SKFSVLTHCNTGS 180 (373)
Q Consensus 168 ~~~~ILT~~~sgs 180 (373)
.+..|++||.+|.
T Consensus 60 ~~~~ivv~C~~G~ 72 (100)
T cd01523 60 DDQEVTVICAKEG 72 (100)
T ss_pred CCCeEEEEcCCCC
Confidence 4567888999863
No 188
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=26.48 E-value=1.8e+02 Score=29.00 Aligned_cols=64 Identities=19% Similarity=0.115 Sum_probs=41.5
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcc--hHHHHHHHhhCCCCeEEEcchHHH
Q 017312 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQG--SRLTAFELVHDRIPATLIADSAAA 240 (373)
Q Consensus 169 ~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG--~rlta~~L~~~GI~vtlI~Dsa~~ 240 (373)
..+|-|||+- .-.+...++.+++.|....+.+..+-..... .++ ++.+.+.|.++.+|+|++-.
T Consensus 103 ~iri~~~~~e-------~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~-a~~~~~~Ga~~i~i~DT~G~ 168 (333)
T TIGR03217 103 TVRVATHCTE-------ADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQ-AKLMESYGADCVYIVDSAGA 168 (333)
T ss_pred EEEEEeccch-------HHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHH-HHHHHhcCCCEEEEccCCCC
Confidence 3557788752 1245667888888888777777666433222 122 44567789999999998644
No 189
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=26.42 E-value=79 Score=31.82 Aligned_cols=50 Identities=8% Similarity=0.003 Sum_probs=30.7
Q ss_pred ccccHHHHHHHHHHCCCeeEEEEecCCCCC-cchHH-HHHHHhhCCCCeEEEc
Q 017312 185 GYGTALGVIRALHSEGVLERAYCSETRPFN-QGSRL-TAFELVHDRIPATLIA 235 (373)
Q Consensus 185 g~~tal~~l~~a~~~g~~~~V~v~EsrP~~-qG~rl-ta~~L~~~GI~vtlI~ 235 (373)
+-|.+...|..|.++||+.+|+| |=+-.+ |...+ -|++|.++|+.|.|-.
T Consensus 48 ~~S~iv~aLi~AA~nGK~Vtv~v-ELkARFDEe~Ni~Wa~~Le~aGv~ViyG~ 99 (352)
T PF13090_consen 48 SNSPIVNALIEAAENGKQVTVLV-ELKARFDEENNIHWAKRLEEAGVHVIYGV 99 (352)
T ss_dssp TT-HHHHHHHHHHHTT-EEEEEE-STTSSSTTCCCCCCCHHHHHCT-EEEE--
T ss_pred CCCHHHHHHHHHHHcCCEEEEEE-EEeccccHHHHhHHHhhHHhcCeEEEcCC
Confidence 44677777888888999988875 544443 22221 2567999999988754
No 190
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=26.41 E-value=6.4e+02 Score=25.94 Aligned_cols=85 Identities=16% Similarity=0.165 Sum_probs=44.5
Q ss_pred HHHHHHCCCeeEEEEecCCCCCcch-HHHHHHHhhCCCCeEEEcc----hHHHHHHHcCCCCEEEEcceeEecC-CCeec
Q 017312 193 IRALHSEGVLERAYCSETRPFNQGS-RLTAFELVHDRIPATLIAD----SAAAALMKDGRVSAVIVGADRVAAN-GDTAN 266 (373)
Q Consensus 193 l~~a~~~g~~~~V~v~EsrP~~qG~-rlta~~L~~~GI~vtlI~D----sa~~~~m~~~~vd~VivGAd~I~~n-G~v~n 266 (373)
+....+.|. +|++.. ..+.|. .+....|...|+.++++.| ..+...+. ++. ++|+ .+..... | .+
T Consensus 101 l~~ll~~Gd--~VI~~~--~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~-~~t-k~V~-~e~~~Np~~-~v- 171 (437)
T PRK05613 101 ILNLAGAGD--HIVTSP--RLYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQ-PNT-KAFF-GETFANPQA-DV- 171 (437)
T ss_pred HHHhcCCCC--EEEECC--CccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCC-ccC-eEEE-EECCCCCCC-cc-
Confidence 433334443 666652 223232 2333456788999999863 22333442 333 3333 2332211 2 22
Q ss_pred ccchHHHHHHHHhCCCeEEEe
Q 017312 267 KIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 267 kiGT~~lA~~Ak~~~vPvyV~ 287 (373)
.---.++-+||++|++++|=
T Consensus 172 -~di~~I~~la~~~gi~livD 191 (437)
T PRK05613 172 -LDIPAVAEVAHRNQVPLIVD 191 (437)
T ss_pred -cCHHHHHHHHHHcCCeEEEE
Confidence 23456778899999999873
No 191
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=26.40 E-value=4.8e+02 Score=28.22 Aligned_cols=34 Identities=12% Similarity=0.054 Sum_probs=27.4
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcc
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD 236 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~D 236 (373)
++.++|---+|. +|..++..+|.+.+||++.|.+
T Consensus 205 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 238 (578)
T PRK15490 205 PVELIIRSLTPE-LRQDFFLKEVLEEQVEVLEIAK 238 (578)
T ss_pred ceeEEEeecCcc-cCcchhHHHHHhcCCceEEeec
Confidence 577777766775 4778889999999999998864
No 192
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=26.31 E-value=1.8e+02 Score=30.15 Aligned_cols=74 Identities=20% Similarity=0.139 Sum_probs=38.8
Q ss_pred cHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCC-CC-eEEEcchHHHHHHHcCCCCEEEEcceeEecCC
Q 017312 188 TALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDR-IP-ATLIADSAAAALMKDGRVSAVIVGADRVAANG 262 (373)
Q Consensus 188 tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~G-I~-vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG 262 (373)
.+..+++.+++.|....++..+..+...+.++ |.+....| .+ -.|.....+-.+.++.++|.|+-|..-...|.
T Consensus 13 ia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~-aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg~g~lse~~ 88 (472)
T PRK07178 13 IAVRIVRACAEMGIRSVAIYSEADRHALHVKR-ADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPGYGFLSENA 88 (472)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCccCCccHhh-CCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeCCCCcccCH
Confidence 46789999999887655554444333333322 11110011 01 12333334555566678999998864444443
No 193
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=26.07 E-value=64 Score=29.61 Aligned_cols=51 Identities=24% Similarity=0.203 Sum_probs=36.6
Q ss_pred HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCc
Q 017312 241 ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (373)
Q Consensus 241 ~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (373)
.++..++.|+||.|--.=..-|.-+.-.||...|+-|..+|||=+.+.-.+
T Consensus 85 ~~~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~ 135 (196)
T PF01975_consen 85 GLLPDKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDS 135 (196)
T ss_dssp CTSTTSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEES
T ss_pred hhhccCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccc
Confidence 344334699999998766556767899999999999999999999875433
No 194
>PRK00770 deoxyhypusine synthase-like protein; Provisional
Probab=26.04 E-value=1.1e+02 Score=31.17 Aligned_cols=115 Identities=18% Similarity=0.211 Sum_probs=60.7
Q ss_pred CCcEEEEecCCCcccccccc-cHHHHHHHHHHCCCeeEEEEe----------c--CCCCCcchH-HHHHHHhhCCCC---
Q 017312 168 SKFSVLTHCNTGSLATAGYG-TALGVIRALHSEGVLERAYCS----------E--TRPFNQGSR-LTAFELVHDRIP--- 230 (373)
Q Consensus 168 ~~~~ILT~~~sgslat~g~~-tal~~l~~a~~~g~~~~V~v~----------E--srP~~qG~r-lta~~L~~~GI~--- 230 (373)
+..++||+ +|.+.++|.+ -++ ..+.++ +.+.++|+ + .-|.+.|.- +--.+|.+.||.
T Consensus 51 ~~tvfLtl--tgamisaGLr~~ii---~~LIr~-g~VD~IVTTGAnl~hD~~~alg~~~y~G~~~~dd~~Lr~~GinRI~ 124 (384)
T PRK00770 51 GVTVGLTL--SGAMTPAGFGVSAL---APLIEA-GFIDWIISTGANLYHDLHYALGLPLFAGHPFVDDVKLREEGIIRIY 124 (384)
T ss_pred CCcEEEEe--ccchhhhhcChHHH---HHHHHc-CCccEEEcCCccHHHHHHHHhCCCcccCCCCCCHHHHHHcCCCccc
Confidence 44566666 5889888776 343 444443 45777776 2 247777752 334578999964
Q ss_pred eEEEcchHHHHHHHcCCCCEEEEcce--eEecCCCeecccchH-------------HHHHHHHhCCCeEEEeccC
Q 017312 231 ATLIADSAAAALMKDGRVSAVIVGAD--RVAANGDTANKIGTY-------------SLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 231 vtlI~Dsa~~~~m~~~~vd~VivGAd--~I~~nG~v~nkiGT~-------------~lA~~Ak~~~vPvyV~a~~ 290 (373)
=++|+......+- +-++.++=++. ....-+.++..+|-+ .+-..|.+++|||||=+.+
T Consensus 125 dv~ip~e~~~~~e--~~l~~il~~~~~~~~~s~~E~i~~LGk~i~~~~~~~~~~e~SiL~~Ayk~~IPVf~Pa~~ 197 (384)
T PRK00770 125 DIIFDYDVLLETD--AFIREILKAEPFQKRMGTAEFHYLLGKYVREVEKQLGVPHKSLLATAYEYGVPIYTSSPG 197 (384)
T ss_pred ccCcChHHHHHHH--HHHHHHHHhccccCCccHHHHHHHHHHHhhhhcccCCCCcccHHHHHHHcCCCEECCCch
Confidence 3455543332221 22333322221 111112222223332 3445688899999996654
No 195
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=25.77 E-value=2.1e+02 Score=25.03 Aligned_cols=79 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred EEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCe
Q 017312 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNIL 283 (373)
Q Consensus 204 ~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vP 283 (373)
+||+.=.+.-.--++.....|...|+++.++.|.. ...+ .+=|.+|+ +.-.| +.--+..++-.||++|+|
T Consensus 32 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~-~~~~--~~~Dv~I~----iS~sG---~t~~~i~~~~~ak~~g~~ 101 (179)
T TIGR03127 32 RIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETT-TPSI--KKGDLLIA----ISGSG---ETESLVTVAKKAKEIGAT 101 (179)
T ss_pred EEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcc-cCCC--CCCCEEEE----EeCCC---CcHHHHHHHHHHHHCCCe
Q ss_pred EEEeccCcc
Q 017312 284 FYVAAPLTS 292 (373)
Q Consensus 284 vyV~a~~~k 292 (373)
+++++....
T Consensus 102 ii~IT~~~~ 110 (179)
T TIGR03127 102 VAAITTNPE 110 (179)
T ss_pred EEEEECCCC
No 196
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=25.63 E-value=2.8e+02 Score=25.58 Aligned_cols=77 Identities=21% Similarity=0.229 Sum_probs=46.3
Q ss_pred HHCCCeeEEEEec--CCCCCcc-hHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEec-CCCeecccchHH
Q 017312 197 HSEGVLERAYCSE--TRPFNQG-SRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAA-NGDTANKIGTYS 272 (373)
Q Consensus 197 ~~~g~~~~V~v~E--srP~~qG-~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~-nG~v~nkiGT~~ 272 (373)
.+.|..|.|++.+ ..|...+ -+-.+.+|++.+- .+++... .-|.+|+|||.|+. ||-+..|-.+..
T Consensus 19 ~~~gi~f~~~~~~iDE~~~~~~~P~~~v~~LA~~KA-------~~va~~~---~~~~~VigaDtvv~ldgrilgKP~~~~ 88 (193)
T COG0424 19 EQLGIPFEVIPSDIDEPLLKAEEPREYVLRLAEEKA-------RAVAARL---PPDALVIGADTVVVLDGRILGKPKDEE 88 (193)
T ss_pred HHCCCCeEEecCCCCCCcccCCCHHHHHHHHHHHHH-------HHHHHhC---CCCCEEEecCeEEEECCEEecCCCCHH
Confidence 3458899999663 2232222 2223445554321 0122222 25999999999988 888999999987
Q ss_pred HH--HHHHhCCCe
Q 017312 273 LA--LCAKFHNIL 283 (373)
Q Consensus 273 lA--~~Ak~~~vP 283 (373)
-| ++.+-.|.-
T Consensus 89 eA~~~L~~lSG~~ 101 (193)
T COG0424 89 EAREMLRKLSGRT 101 (193)
T ss_pred HHHHHHHHhcCCe
Confidence 76 455555543
No 197
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=25.62 E-value=7.2e+02 Score=25.27 Aligned_cols=86 Identities=10% Similarity=0.017 Sum_probs=47.9
Q ss_pred ccHHHHHHHHHHCC-CeeEEEEe-cCCCCCcchHHHHHHHhhCCCCe--E---EEcch----HHHHHHHcCCCCEEEEcc
Q 017312 187 GTALGVIRALHSEG-VLERAYCS-ETRPFNQGSRLTAFELVHDRIPA--T---LIADS----AAAALMKDGRVSAVIVGA 255 (373)
Q Consensus 187 ~tal~~l~~a~~~g-~~~~V~v~-EsrP~~qG~rlta~~L~~~GI~v--t---lI~Ds----a~~~~m~~~~vd~VivGA 255 (373)
+.+..+.+.+.+.| ...-+..+ -..|..++... .+++.+.|++. . ++.|. .+..++++.+.|.+|.+.
T Consensus 303 ~~~~~~~~~l~elG~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~pDl~i~~~ 381 (426)
T cd01972 303 AYGHLLIAVLRELGFGEVPVVLVFHHDPTYDRGDS-EKDLLEHGVDPEIDITKYTVSNGQYYQFYNLLKRVKPDFIIFRH 381 (426)
T ss_pred ccHHHHHHHHHHcCCceEEEEEeccCchhhhcchh-HHHHhcCCcccccccceeeecCCCHHHHHHHHHHhCCCEEEEcC
Confidence 34666777777888 65443333 23334443222 23566667632 1 44554 466777788888775432
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 256 DRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 256 d~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
.. .. ...|++.|+|++-.
T Consensus 382 ~~-------------~~-~~~~~~~gip~~~~ 399 (426)
T cd01972 382 GG-------------LF-PDATVYLGIPVVPL 399 (426)
T ss_pred CC-------------cc-HHHHHhcCCCEEec
Confidence 11 11 12347799999865
No 198
>PF04705 TSNR_N: Thiostrepton-resistance methylase, N terminus; InterPro: IPR006795 This region is found in some members of the SpoU-type rRNA methylase family (IPR001537 from INTERPRO).; GO: 0008649 rRNA methyltransferase activity, 0046677 response to antibiotic; PDB: 3GYQ_B 3NK6_A 3NK7_A.
Probab=25.52 E-value=73 Score=26.39 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=30.5
Q ss_pred HHHHHHHHCCCe-eEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHH
Q 017312 191 GVIRALHSEGVL-ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMK 244 (373)
Q Consensus 191 ~~l~~a~~~g~~-~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~ 244 (373)
..|.++..+|.. +.||-.|+.|...+ |.+ ...+.|||+.++.-+-+--+++
T Consensus 38 EPL~~~i~AGvefieVYg~~~~p~~~~--ll~-~c~~r~Ipvrlv~~~v~N~lFk 89 (115)
T PF04705_consen 38 EPLTHSIRAGVEFIEVYGSDGSPVPPE--LLA-ACRQRGIPVRLVDSAVVNQLFK 89 (115)
T ss_dssp HHHHHHHCTT-EEEEEEEETTS---CC--CCH-HHHCTT--EEEE-HHHHCCCS-
T ss_pred hHHHHHHhcCcEEEEEeeecCCCCChH--HHH-HHHhcCCceEEecHHHHHHHHh
Confidence 466777778876 56999999999765 333 4678999999986555444443
No 199
>PRK15005 universal stress protein F; Provisional
Probab=25.39 E-value=84 Score=26.01 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=26.6
Q ss_pred HcCCCCEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCeEEEe
Q 017312 244 KDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 244 ~~~~vd~VivGAd~I~~nG~v~n-kiGT~~lA~~Ak~~~vPvyV~ 287 (373)
++.++|.|++|+.+ +| ... -.|+- ..-+.++-.+||+|+
T Consensus 104 ~~~~~DLIV~Gs~~---~~-~~~~llGS~-a~~vl~~a~cpVlvV 143 (144)
T PRK15005 104 KKIPADMIIIASHR---PD-ITTYLLGSN-AAAVVRHAECSVLVV 143 (144)
T ss_pred HHcCCCEEEEeCCC---CC-chheeecch-HHHHHHhCCCCEEEe
Confidence 45799999999874 23 322 24664 344577788999986
No 200
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=25.33 E-value=3.3e+02 Score=23.47 Aligned_cols=64 Identities=22% Similarity=0.167 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHCCC---eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcch--HHHHHHHcCCCCEEEEcc
Q 017312 188 TALGVIRALHSEGV---LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS--AAAALMKDGRVSAVIVGA 255 (373)
Q Consensus 188 tal~~l~~a~~~g~---~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Ds--a~~~~m~~~~vd~VivGA 255 (373)
|+.+++...++.|. ..+|.|. +|-..-|..| +..|.+.|..++...-. .+...+ ++.|.|+...
T Consensus 11 t~~a~~~ll~~~~~~~~gk~v~Vv-Grs~~vG~pl-a~lL~~~gatV~~~~~~t~~l~~~v--~~ADIVvsAt 79 (140)
T cd05212 11 VAKAVKELLNKEGVRLDGKKVLVV-GRSGIVGAPL-QCLLQRDGATVYSCDWKTIQLQSKV--HDADVVVVGS 79 (140)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEE-CCCchHHHHH-HHHHHHCCCEEEEeCCCCcCHHHHH--hhCCEEEEec
Confidence 56666655554332 2233333 3333346666 66788999988888611 133455 7888886543
No 201
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=25.22 E-value=5.4e+02 Score=23.66 Aligned_cols=58 Identities=16% Similarity=0.066 Sum_probs=37.6
Q ss_pred HHHHHhhCC--CCeEEEcc----hHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEec
Q 017312 220 TAFELVHDR--IPATLIAD----SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (373)
Q Consensus 220 ta~~L~~~G--I~vtlI~D----sa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (373)
+++.|.+.+ ++++.+.. .....++ .++|.||...|... .-..+.-.|+.+++|++.+.
T Consensus 80 ~~~~l~~~np~~~i~~~~~~i~~~~~~~~~--~~~DvVi~~~d~~~---------~r~~l~~~~~~~~ip~i~~g 143 (228)
T cd00757 80 AAERLRAINPDVEIEAYNERLDAENAEELI--AGYDLVLDCTDNFA---------TRYLINDACVKLGKPLVSGA 143 (228)
T ss_pred HHHHHHHhCCCCEEEEecceeCHHHHHHHH--hCCCEEEEcCCCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 355565543 44544432 2344567 78999988877552 23567788999999999864
No 202
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=25.14 E-value=1.6e+02 Score=28.98 Aligned_cols=80 Identities=21% Similarity=0.139 Sum_probs=53.1
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEe-----------cCCCCCcchH-------HHHHHHhhCCCCe
Q 017312 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCS-----------ETRPFNQGSR-------LTAFELVHDRIPA 231 (373)
Q Consensus 170 ~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~-----------EsrP~~qG~r-------lta~~L~~~GI~v 231 (373)
++||+||+=+... .|.+..+...+. +..-|++. +.+|+.-+.. -.+....+.|++
T Consensus 197 dvvlsY~ry~l~d----~tLl~~~~~~~s--k~vgVi~AsalsmgLLt~~gp~~wHPaS~Elk~~a~~aa~~Cq~rnv~- 269 (342)
T KOG1576|consen 197 DVVLSYCRYTLND----NTLLRYLKRLKS--KGVGVINASALSMGLLTNQGPPPWHPASDELKEAAKAAAEYCQSRNVE- 269 (342)
T ss_pred eeehhhhhhcccc----HHHHHHHHHHHh--cCceEEehhhHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHcCcc-
Confidence 8999999753322 356666655554 44566665 5666665432 123345566765
Q ss_pred EEEcchHHHHHHHcCCCCEEEEcceeE
Q 017312 232 TLIADSAAAALMKDGRVSAVIVGADRV 258 (373)
Q Consensus 232 tlI~Dsa~~~~m~~~~vd~VivGAd~I 258 (373)
+.+-|+.|.|+-+.+.-|++|-+.+
T Consensus 270 --l~kLA~~Yam~~~~~~~~lvGm~s~ 294 (342)
T KOG1576|consen 270 --LGKLAMYYAMSLPGVSTVLVGMSSR 294 (342)
T ss_pred --HHHHHHHHHHccCCcceEEecCchH
Confidence 5677899999989999999998765
No 203
>PRK02929 L-arabinose isomerase; Provisional
Probab=24.89 E-value=7.7e+02 Score=26.07 Aligned_cols=59 Identities=24% Similarity=0.201 Sum_probs=43.5
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEe---cCCCC----------Cc---chHHHHHHHhhCCCCeEE
Q 017312 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCS---ETRPF----------NQ---GSRLTAFELVHDRIPATL 233 (373)
Q Consensus 170 ~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~---EsrP~----------~q---G~rlta~~L~~~GI~vtl 233 (373)
+-|+++..+ ||++..+++.+.+-++++-++-+ ..-|+ +| |.+.++.-|.+.|||.++
T Consensus 74 dgvi~~m~T-------Fs~a~~~i~~~~~l~~PvL~~~~Q~~~e~p~~~id~d~m~lnqs~~G~~e~~~il~R~gi~~~~ 146 (499)
T PRK02929 74 AGVITWMHT-------FSPAKMWIRGLSALQKPLLHLHTQFNAEIPWDTIDMDFMNLNQSAHGDREFGFIGARLRKQRKV 146 (499)
T ss_pred cEEEEccCC-------CchHHHHHHHHHHcCCCEEEEecCCCccCCCCCCCcchhhhhhcccChHHHHHHHHHcCCCeeE
Confidence 667776655 67887788888877888888877 44333 22 777888889999999888
Q ss_pred Ec
Q 017312 234 IA 235 (373)
Q Consensus 234 I~ 235 (373)
|.
T Consensus 147 v~ 148 (499)
T PRK02929 147 VV 148 (499)
T ss_pred EE
Confidence 76
No 204
>PF13336 AcetylCoA_hyd_C: Acetyl-CoA hydrolase/transferase C-terminal domain; PDB: 3EH7_A 3D3U_A 2OAS_A 3GK7_B 3QDQ_A 2G39_A 2NVV_C 3S8D_B 3QLI_B 3QLK_B ....
Probab=24.88 E-value=38 Score=30.09 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=14.6
Q ss_pred ecCCCCccEEEeCCCCcCCC
Q 017312 338 VTPANLITGIITEKGVVTKA 357 (373)
Q Consensus 338 vtP~~lIt~iITE~Gi~~p~ 357 (373)
.+|...++.||||.|+..-.
T Consensus 108 t~~r~dvd~VVTEyGvA~Lr 127 (154)
T PF13336_consen 108 TTPRHDVDYVVTEYGVADLR 127 (154)
T ss_dssp SB-TTT-SEEEETTEEEE-T
T ss_pred ccCcccCCEEEcCCEEEEeC
Confidence 47889999999999997544
No 205
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=24.58 E-value=5.4e+02 Score=25.06 Aligned_cols=110 Identities=19% Similarity=0.244 Sum_probs=58.9
Q ss_pred HHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCc--------------ch-
Q 017312 153 IGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQ--------------GS- 217 (373)
Q Consensus 153 I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~q--------------G~- 217 (373)
++..+.+.|. +.+||..+- |.| -..+++.....|.. ++.+.+..+.-. |.
T Consensus 9 ~G~eaq~kL~------~s~VLIvG~-gGL-------G~EiaKnLalaGVg-~itI~D~d~ve~snL~rqf~~~~~dIGk~ 73 (286)
T cd01491 9 LGHEAMKKLQ------KSNVLISGL-GGL-------GVEIAKNLILAGVK-SVTLHDTKPCSWSDLSSQFYLREEDIGKN 73 (286)
T ss_pred cCHHHHHHHh------cCcEEEEcC-CHH-------HHHHHHHHHHcCCC-eEEEEcCCccchhhcccCccCChHHhCHH
Confidence 4555666776 356666542 322 23345555556765 333334333210 21
Q ss_pred --HHHHHHHhhCC--CCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEec
Q 017312 218 --RLTAFELVHDR--IPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (373)
Q Consensus 218 --rlta~~L~~~G--I~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (373)
..++..|++.+ ++++.....--...+ .+.|.||...|.+. =-..+.-+|+.++|||+.+.
T Consensus 74 Kaea~~~~L~eLNp~V~V~~~~~~~~~~~l--~~fdvVV~~~~~~~---------~~~~in~~c~~~~ipfI~a~ 137 (286)
T cd01491 74 RAEASQARLAELNPYVPVTVSTGPLTTDEL--LKFQVVVLTDASLE---------DQLKINEFCHSPGIKFISAD 137 (286)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccCCHHHH--hcCCEEEEecCCHH---------HHHHHHHHHHHcCCEEEEEe
Confidence 22344565544 666666544223455 68898877655221 11235567899999999865
No 206
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=24.49 E-value=2.4e+02 Score=25.24 Aligned_cols=62 Identities=23% Similarity=0.381 Sum_probs=34.5
Q ss_pred CCcEEEEecCCCcccccccccH-HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcC
Q 017312 168 SKFSVLTHCNTGSLATAGYGTA-LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDG 246 (373)
Q Consensus 168 ~~~~ILT~~~sgslat~g~~ta-l~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~ 246 (373)
.|.+++.. |||-+ .++-+.++..| -+|+|+|..|.. .+ +-...|.++.-+. ... +
T Consensus 22 ~Gk~vvV~---------GYG~vG~g~A~~lr~~G--a~V~V~e~DPi~---al---qA~~dGf~v~~~~-----~a~--~ 77 (162)
T PF00670_consen 22 AGKRVVVI---------GYGKVGKGIARALRGLG--ARVTVTEIDPIR---AL---QAAMDGFEVMTLE-----EAL--R 77 (162)
T ss_dssp TTSEEEEE-----------SHHHHHHHHHHHHTT---EEEEE-SSHHH---HH---HHHHTT-EEE-HH-----HHT--T
T ss_pred CCCEEEEe---------CCCcccHHHHHHHhhCC--CEEEEEECChHH---HH---HhhhcCcEecCHH-----HHH--h
Confidence 46666665 56666 44556666544 789999999963 12 3455799877432 234 7
Q ss_pred CCCEEEE
Q 017312 247 RVSAVIV 253 (373)
Q Consensus 247 ~vd~Viv 253 (373)
..|.++.
T Consensus 78 ~adi~vt 84 (162)
T PF00670_consen 78 DADIFVT 84 (162)
T ss_dssp T-SEEEE
T ss_pred hCCEEEE
Confidence 8887753
No 207
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=24.49 E-value=1.4e+02 Score=29.97 Aligned_cols=101 Identities=16% Similarity=0.102 Sum_probs=69.0
Q ss_pred cccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHH---HHHHh-hC-CCCeEEEcchHH--HHHHHcCCCCEEEEcceeE
Q 017312 186 YGTALGVIRALHSEGVLERAYCSETRPFNQGSRLT---AFELV-HD-RIPATLIADSAA--AALMKDGRVSAVIVGADRV 258 (373)
Q Consensus 186 ~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlt---a~~L~-~~-GI~vtlI~Dsa~--~~~m~~~~vd~VivGAd~I 258 (373)
+-++.++|+.|.+.+..+-+=+.++.=.+-|..+. .+.++ +. ++||.+-.|-.- -.++ .-++ .|-.+|
T Consensus 28 ~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~--~Ai~---~GFtSV 102 (347)
T PRK13399 28 MEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDHGNSPATCQ--SAIR---SGFTSV 102 (347)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHH--HHHh---cCCCEE
Confidence 46788899999887766555454433233343332 23344 34 499999999873 3344 3333 588999
Q ss_pred ecCCCee-----------cccchHHHHHHHHhCCCeEEEeccCccc
Q 017312 259 AANGDTA-----------NKIGTYSLALCAKFHNILFYVAAPLTSI 293 (373)
Q Consensus 259 ~~nG~v~-----------nkiGT~~lA~~Ak~~~vPvyV~a~~~k~ 293 (373)
+-||+-. |--=|-.+.-.||.+|++|= +|.-.+
T Consensus 103 MiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVE--aELG~i 146 (347)
T PRK13399 103 MMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVE--GELGCL 146 (347)
T ss_pred EEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEE--EEeeec
Confidence 9999977 77889999999999999886 455444
No 208
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=24.45 E-value=3.1e+02 Score=21.83 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=16.3
Q ss_pred HhhCCCCeEEEcchH--HHHHHHcCCCCEEEEcce
Q 017312 224 LVHDRIPATLIADSA--AAALMKDGRVSAVIVGAD 256 (373)
Q Consensus 224 L~~~GI~vtlI~Dsa--~~~~m~~~~vd~VivGAd 256 (373)
|.+.|+++.+..-+. +.... .++|.++.+.+
T Consensus 27 l~~~gi~~~v~~~~~~e~~~~~--~~~D~iv~t~~ 59 (94)
T PRK10310 27 CQSHNIPVELIQCRVNEIETYM--DGVHLICTTAR 59 (94)
T ss_pred HHHCCCeEEEEEecHHHHhhhc--CCCCEEEECCc
Confidence 455666655444222 22223 56788877763
No 209
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=24.28 E-value=3.5e+02 Score=25.11 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=39.4
Q ss_pred ccccHHHHHHHHHHCCC-eeE-EEEecCCCCCcchHHHHHHHhhCCCCeEEE----------cchHHHHHHHcCCCCEEE
Q 017312 185 GYGTALGVIRALHSEGV-LER-AYCSETRPFNQGSRLTAFELVHDRIPATLI----------ADSAAAALMKDGRVSAVI 252 (373)
Q Consensus 185 g~~tal~~l~~a~~~g~-~~~-V~v~EsrP~~qG~rlta~~L~~~GI~vtlI----------~Dsa~~~~m~~~~vd~Vi 252 (373)
|.|+-+..|-.|.+.|. +.+ +.|.-.+|..-|.. .-.+.|||+.++ -|.++...|...++|.|+
T Consensus 9 G~GSNlqaiida~~~~~~~a~i~~Visd~~~A~~le----rA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvv 84 (200)
T COG0299 9 GNGSNLQAIIDAIKGGKLDAEIVAVISDKADAYALE----RAAKAGIPTVVLDRKEFPSREAFDRALVEALDEYGPDLVV 84 (200)
T ss_pred CCcccHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHH----HHHHcCCCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 34666655555544443 222 33334556655532 356889998665 467777888888888876
Q ss_pred E
Q 017312 253 V 253 (373)
Q Consensus 253 v 253 (373)
+
T Consensus 85 L 85 (200)
T COG0299 85 L 85 (200)
T ss_pred E
Confidence 5
No 210
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=24.25 E-value=7.1e+02 Score=24.69 Aligned_cols=112 Identities=17% Similarity=0.145 Sum_probs=61.9
Q ss_pred HHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCC--------CC-C------cc
Q 017312 152 AIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETR--------PF-N------QG 216 (373)
Q Consensus 152 ~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~Esr--------P~-~------qG 216 (373)
.++..+.+.|. +.+|+..+ +|.+ |. .+...+.+.|...-.+|+... -. + +|
T Consensus 13 ~~G~~~Q~~L~------~~~VlIiG-~Ggl-----Gs--~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g 78 (338)
T PRK12475 13 GIGEEGQRKIR------EKHVLIVG-AGAL-----GA--ANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQK 78 (338)
T ss_pred hcCHHHHHhhc------CCcEEEEC-CCHH-----HH--HHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCC
Confidence 46778888887 34566654 3433 22 234445556764333333221 10 0 11
Q ss_pred ---hHHHHHHHhhC--CCCeEEEc----chHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 217 ---SRLTAFELVHD--RIPATLIA----DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 217 ---~rlta~~L~~~--GI~vtlI~----Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
...+++.|.+. ++.++.+. +..+..++ .++|.||.+.|... --+.+.-+|+.+++|++.+
T Consensus 79 ~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~--~~~DlVid~~D~~~---------~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 79 KPKAIAAKEHLRKINSEVEIVPVVTDVTVEELEELV--KEVDLIIDATDNFD---------TRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred ccHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHh--cCCCEEEEcCCCHH---------HHHHHHHHHHHcCCCEEEE
Confidence 11223455544 45555443 23345566 78999999887542 2255777899999999865
Q ss_pred c
Q 017312 288 A 288 (373)
Q Consensus 288 a 288 (373)
+
T Consensus 148 ~ 148 (338)
T PRK12475 148 G 148 (338)
T ss_pred E
Confidence 4
No 211
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=24.24 E-value=2.3e+02 Score=20.82 Aligned_cols=51 Identities=10% Similarity=0.154 Sum_probs=30.3
Q ss_pred HHHHHHHCCC-eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHH
Q 017312 192 VIRALHSEGV-LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALM 243 (373)
Q Consensus 192 ~l~~a~~~g~-~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m 243 (373)
.+.+|.+++. ..+||+.|..-...-..+ ...+.+.|+++..+++.-+..+-
T Consensus 7 ~V~eaL~~~~~i~~l~~~~~~~~~~~~~i-~~~~~~~~i~v~~v~~~~l~~ls 58 (76)
T PF08032_consen 7 AVEEALKSGPRIKKLFVTEEKADKRIKEI-LKLAKKKGIPVYEVSKKVLDKLS 58 (76)
T ss_dssp HHHHHHHCTGGEEEEEEETT---CCTHHH-HHHHHHCT-EEEEE-HHHHHHCT
T ss_pred HHHHHHcCCCCccEEEEEcCccchhHHHH-HHHHHHcCCeEEEeCHHHHHHHc
Confidence 4455555655 567899998222222234 34577889999999988766543
No 212
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=24.19 E-value=7.2e+02 Score=24.73 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=44.5
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcch-HHHHHHHhhCCCCeEEEcchHHHHHHH--cCCCCEEEEcceeEe-cCCCee
Q 017312 190 LGVIRALHSEGVLERAYCSETRPFNQGS-RLTAFELVHDRIPATLIADSAAAALMK--DGRVSAVIVGADRVA-ANGDTA 265 (373)
Q Consensus 190 l~~l~~a~~~g~~~~V~v~EsrP~~qG~-rlta~~L~~~GI~vtlI~Dsa~~~~m~--~~~vd~VivGAd~I~-~nG~v~ 265 (373)
..++....+.|. +|++. +|.+.+. .+....+...|++++.+.......+-+ .++...|++- ... ..|.+.
T Consensus 83 ~~al~al~~~Gd--~Vl~~--~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~le--~p~np~g~~~ 156 (380)
T TIGR01325 83 QAALMTLLQAGD--HVVAS--RSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWEAAVKPNTKLVFVE--TPSNPLGELV 156 (380)
T ss_pred HHHHHHHhCCCC--EEEEe--cCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHHHhcCCCceEEEEE--CCCCCCCeee
Confidence 334444444454 45553 4555432 222334667899998886432222221 1344444431 111 123332
Q ss_pred cccchHHHHHHHHhCCCeEEE
Q 017312 266 NKIGTYSLALCAKFHNILFYV 286 (373)
Q Consensus 266 nkiGT~~lA~~Ak~~~vPvyV 286 (373)
. --.++-+||++|++++|
T Consensus 157 d---l~~I~~la~~~gi~liv 174 (380)
T TIGR01325 157 D---IAALAELAHAIGALLVV 174 (380)
T ss_pred C---HHHHHHHHHHcCCEEEE
Confidence 1 24567788999999887
No 213
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=24.14 E-value=1.7e+02 Score=28.81 Aligned_cols=108 Identities=16% Similarity=0.180 Sum_probs=64.1
Q ss_pred EEEEecCCCcccccc-------cccHHHHHHHHHHCCCeeEEEEecCCCCCc--chHHHHHH---HhhCCCCeEEEcchH
Q 017312 171 SVLTHCNTGSLATAG-------YGTALGVIRALHSEGVLERAYCSETRPFNQ--GSRLTAFE---LVHDRIPATLIADSA 238 (373)
Q Consensus 171 ~ILT~~~sgslat~g-------~~tal~~l~~a~~~g~~~~V~v~EsrP~~q--G~rlta~~---L~~~GI~vtlI~Dsa 238 (373)
+|-..-..|++...+ +....+.|+.++.....--|++.=..|... +....+++ |.+.| ||+......
T Consensus 60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~-PV~v~v~~~ 138 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKK-PVVVSVGGY 138 (317)
T ss_pred EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcC-CEEEEECCe
Confidence 444333457776554 556778888888765544444444457764 33333443 56778 999888765
Q ss_pred H---HHHHHcCCCCEEEEcceeEecC-CCeecccc----hHHHHHHHHhCCCeEEEe
Q 017312 239 A---AALMKDGRVSAVIVGADRVAAN-GDTANKIG----TYSLALCAKFHNILFYVA 287 (373)
Q Consensus 239 ~---~~~m~~~~vd~VivGAd~I~~n-G~v~nkiG----T~~lA~~Ak~~~vPvyV~ 287 (373)
+ ||+| =++||.|++| .+++..|| ...+.-+.+.+||-+.+.
T Consensus 139 AASGGY~I--------A~aAd~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~ 187 (317)
T COG0616 139 AASGGYYI--------ALAADKIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVI 187 (317)
T ss_pred ecchhhhh--------hccCCEEEecCCceeeeceeEEecCCHHHHHHhcCCceeee
Confidence 3 5655 4555555553 22334443 455667788888886643
No 214
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=23.80 E-value=3.3e+02 Score=22.54 Aligned_cols=94 Identities=20% Similarity=0.204 Sum_probs=50.8
Q ss_pred EEEEecCCCcccccccccHHH-HHHHHHHCCCeeEEEEecCCC-CCcchHHHHHHHh---hCCCCeEEEcchHHHHHHHc
Q 017312 171 SVLTHCNTGSLATAGYGTALG-VIRALHSEGVLERAYCSETRP-FNQGSRLTAFELV---HDRIPATLIADSAAAALMKD 245 (373)
Q Consensus 171 ~ILT~~~sgslat~g~~tal~-~l~~a~~~g~~~~V~v~EsrP-~~qG~rlta~~L~---~~GI~vtlI~Dsa~~~~m~~ 245 (373)
+|..++.+| ..=+ +.+.+.+...-.-|-+.+++| -..|..+ . ++. ..|++++ |+ ...++
T Consensus 2 rV~i~G~~G--------rMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~-g-~~~~~~~~~~~v~---~~-l~~~~-- 65 (124)
T PF01113_consen 2 RVGIVGASG--------RMGRAIAEAILESPGFELVGAVDRKPSAKVGKDV-G-ELAGIGPLGVPVT---DD-LEELL-- 65 (124)
T ss_dssp EEEEETTTS--------HHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBC-H-HHCTSST-SSBEB---S--HHHHT--
T ss_pred EEEEECCCC--------HHHHHHHHHHHhcCCcEEEEEEecCCcccccchh-h-hhhCcCCcccccc---hh-HHHhc--
Confidence 355665554 4433 344444433333466777777 4556554 2 343 3444444 33 34555
Q ss_pred CCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccC
Q 017312 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 246 ~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
.++|.+| +.-+.-+++..+-.|.++|+|+++.+.-
T Consensus 66 ~~~DVvI----------DfT~p~~~~~~~~~~~~~g~~~ViGTTG 100 (124)
T PF01113_consen 66 EEADVVI----------DFTNPDAVYDNLEYALKHGVPLVIGTTG 100 (124)
T ss_dssp TH-SEEE----------EES-HHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred ccCCEEE----------EcCChHHhHHHHHHHHhCCCCEEEECCC
Confidence 4577553 2336778888888999999999997543
No 215
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=23.59 E-value=2.2e+02 Score=23.50 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=25.6
Q ss_pred HHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 238 AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 238 a~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
-+.-.+ .++|.|++|-..=+.=+ .+--.+..+||||-|.
T Consensus 41 e~~~~~--~~~DvvLlGPQv~y~~~---------~~~~~~~~~giPV~vI 79 (102)
T COG1440 41 ELSEYI--DNADVVLLGPQVRYMLK---------QLKEAAEEKGIPVEVI 79 (102)
T ss_pred HHHHhh--hcCCEEEEChHHHHHHH---------HHHHHhcccCCCeEEe
Confidence 344556 78999999876433211 3445667788999886
No 216
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=23.43 E-value=1.8e+02 Score=25.71 Aligned_cols=54 Identities=17% Similarity=0.070 Sum_probs=34.0
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCC----CcchHHHHHHHhhCCCCeEEE
Q 017312 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPF----NQGSRLTAFELVHDRIPATLI 234 (373)
Q Consensus 168 ~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~----~qG~rlta~~L~~~GI~vtlI 234 (373)
|-..|..||-.|| .+ .+.+.+++.-|+.-++|-. ..-.++ |.+|++.|.+++.-
T Consensus 65 darIVISHaG~GS--------IL----~~~rl~kplIv~pr~s~y~elvDdHQvel-a~klae~~~vv~~s 122 (161)
T COG5017 65 DARIVISHAGEGS--------IL----LLLRLDKPLIVVPRSSQYQELVDDHQVEL-ALKLAEINYVVACS 122 (161)
T ss_pred cceEEEeccCcch--------HH----HHhhcCCcEEEEECchhHHHhhhhHHHHH-HHHHHhcCceEEEc
Confidence 5567788885543 33 3445688887777776421 112344 67889888887766
No 217
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=23.33 E-value=4.5e+02 Score=27.42 Aligned_cols=78 Identities=24% Similarity=0.224 Sum_probs=50.1
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccc
Q 017312 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIG 269 (373)
Q Consensus 190 l~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiG 269 (373)
+.+.+.+++.| ..|++.++||..++.. ...+...||++..-.... ... ..+|.|++. =| + -.
T Consensus 20 ~a~a~~L~~~G--~~v~v~D~~~~~~~~~--~~~~~~~~i~~~~g~~~~--~~~--~~~d~vV~S------PG-i---~~ 81 (448)
T COG0771 20 LAAARFLLKLG--AEVTVSDDRPAPEGLA--AQPLLLEGIEVELGSHDD--EDL--AEFDLVVKS------PG-I---PP 81 (448)
T ss_pred HHHHHHHHHCC--CeEEEEcCCCCccchh--hhhhhccCceeecCccch--hcc--ccCCEEEEC------CC-C---CC
Confidence 34455666666 6888889999886643 336778888887655443 222 566776432 23 3 23
Q ss_pred hHHHHHHHHhCCCeEE
Q 017312 270 TYSLALCAKFHNILFY 285 (373)
Q Consensus 270 T~~lA~~Ak~~~vPvy 285 (373)
+.++-..|+..|+|+.
T Consensus 82 ~~p~v~~A~~~gi~i~ 97 (448)
T COG0771 82 THPLVEAAKAAGIEII 97 (448)
T ss_pred CCHHHHHHHHcCCcEE
Confidence 4557778888888866
No 218
>PRK11173 two-component response regulator; Provisional
Probab=23.31 E-value=3.3e+02 Score=24.29 Aligned_cols=80 Identities=10% Similarity=0.050 Sum_probs=49.5
Q ss_pred eEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHH-HHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCC
Q 017312 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAA-LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN 281 (373)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~-~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~ 281 (373)
.+|.++|..|... ......|...|..+....+...+. .+++...|.|++..+- .+ .-|-..+..+-+..+
T Consensus 4 ~~iLiv~dd~~~~--~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l--~~-----~~g~~~~~~lr~~~~ 74 (237)
T PRK11173 4 PHILIVEDELVTR--NTLKSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDINL--PG-----KNGLLLARELREQAN 74 (237)
T ss_pred CeEEEEeCCHHHH--HHHHHHHHHcCCEEEEECCHHHHHHHHhhCCCCEEEEcCCC--CC-----CCHHHHHHHHhcCCC
Confidence 4677778776653 233556888898888777665442 4555678999886542 22 223333444444567
Q ss_pred CeEEEeccCc
Q 017312 282 ILFYVAAPLT 291 (373)
Q Consensus 282 vPvyV~a~~~ 291 (373)
+|+++++...
T Consensus 75 ~pii~lt~~~ 84 (237)
T PRK11173 75 VALMFLTGRD 84 (237)
T ss_pred CCEEEEECCC
Confidence 8998886543
No 219
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=23.30 E-value=2.7e+02 Score=21.18 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=16.7
Q ss_pred HhhCCCCeEEEcch--HHHHHHHcCCCCEEEEcceeE
Q 017312 224 LVHDRIPATLIADS--AAAALMKDGRVSAVIVGADRV 258 (373)
Q Consensus 224 L~~~GI~vtlI~Ds--a~~~~m~~~~vd~VivGAd~I 258 (373)
+.+.|++++...-. ...... ..+|.++++.+-=
T Consensus 24 ~~~~gi~~~~~~~~~~~~~~~~--~~~D~il~~~~i~ 58 (90)
T PF02302_consen 24 LKELGIEVEVSAGSILEVEEIA--DDADLILLTPQIA 58 (90)
T ss_dssp HHHTTECEEEEEEETTTHHHHH--TT-SEEEEEESSG
T ss_pred HHhccCceEEEEeccccccccc--CCCcEEEEcCccc
Confidence 44445544443333 223334 6788888877543
No 220
>PRK05968 hypothetical protein; Provisional
Probab=23.22 E-value=7.6e+02 Score=24.69 Aligned_cols=86 Identities=14% Similarity=0.097 Sum_probs=44.2
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcch-HHHHHHHhhCCCCeEEEcch---HHHHHHHcCCCCEEEEcceeEecCCCeecc
Q 017312 192 VIRALHSEGVLERAYCSETRPFNQGS-RLTAFELVHDRIPATLIADS---AAAALMKDGRVSAVIVGADRVAANGDTANK 267 (373)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~-rlta~~L~~~GI~vtlI~Ds---a~~~~m~~~~vd~VivGAd~I~~nG~v~nk 267 (373)
.+....+.|. +|++.+ |.+.+. ++....+...|+++.++.-. .+-..+ ++...|++- . ..|-+...
T Consensus 94 al~al~~~Gd--~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i--~~tklV~ie--~--pt~~~~~~ 163 (389)
T PRK05968 94 TVLSFVEPGD--RIVAVR--HVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKAL--PGAKLLYLE--S--PTSWVFEL 163 (389)
T ss_pred HHHHHhCCCC--EEEEeC--CCchHHHHHHHHHHHHcCceEEEeCCCCHHHHHHhc--ccCCEEEEE--C--CCCCCCcH
Confidence 3333344454 455544 444432 23333466789999887422 233334 455555541 1 22222222
Q ss_pred cchHHHHHHHHhCCCeEEEe
Q 017312 268 IGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 268 iGT~~lA~~Ak~~~vPvyV~ 287 (373)
.=-..++-+||+||++++|=
T Consensus 164 ~dl~~i~~la~~~gi~vivD 183 (389)
T PRK05968 164 QDVAALAALAKRHGVVTMID 183 (389)
T ss_pred HHHHHHHHHHHHcCCEEEEE
Confidence 22234677899999998873
No 221
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=23.15 E-value=7.7e+02 Score=24.68 Aligned_cols=85 Identities=13% Similarity=0.119 Sum_probs=46.4
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchHHHH-HHHhhCCCCeEEEcc---hHHHHHHHcCCCCEEEEcceeEecCCCe
Q 017312 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTA-FELVHDRIPATLIAD---SAAAALMKDGRVSAVIVGADRVAANGDT 264 (373)
Q Consensus 189 al~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta-~~L~~~GI~vtlI~D---sa~~~~m~~~~vd~VivGAd~I~~nG~v 264 (373)
...++....+.|. +|++. .|.+.+....+ ..+...|++++.+.. ..+...++ ++...|++ + ..
T Consensus 78 i~~al~all~~GD--~Vl~~--~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~~i~-~~tklV~l-------e-sp 144 (377)
T TIGR01324 78 VTNSILAFVKAGD--HVLMV--DSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLIQ-PNTKVLFL-------E-AP 144 (377)
T ss_pred HHHHHHHhcCCCC--EEEEc--CCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcC-CCceEEEE-------E-CC
Confidence 3344544444453 46654 46665433223 245678999887631 34444442 34444433 1 23
Q ss_pred ecccchH----HHHHHHHhCCCeEEE
Q 017312 265 ANKIGTY----SLALCAKFHNILFYV 286 (373)
Q Consensus 265 ~nkiGT~----~lA~~Ak~~~vPvyV 286 (373)
.|..|.. .++-+||++|++++|
T Consensus 145 ~Np~g~~~dl~~I~~la~~~g~~liv 170 (377)
T TIGR01324 145 SSITFEIQDIPAIAKAARNPGIVIMI 170 (377)
T ss_pred CCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 4445543 367789999998886
No 222
>PRK14362 Maf-like protein; Provisional
Probab=22.94 E-value=5.9e+02 Score=23.56 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=31.8
Q ss_pred CCEEEEcceeEec-CCCeecccchHHHH--HHHHhCCCeEEEec
Q 017312 248 VSAVIVGADRVAA-NGDTANKIGTYSLA--LCAKFHNILFYVAA 288 (373)
Q Consensus 248 vd~VivGAd~I~~-nG~v~nkiGT~~lA--~~Ak~~~vPvyV~a 288 (373)
-+.+++|||.|.. ||.+..|=.+..-| ++-+..|.+..|..
T Consensus 72 ~~~~VI~ADTvV~~~g~ilgKP~~~eeA~~~L~~lsG~~H~V~T 115 (207)
T PRK14362 72 AGRLVIAADTVVALDGMILGKPADRADALSMLRRLAGRTHEVVS 115 (207)
T ss_pred CCCEEEEeCeEEEeCCEEcCCCCCHHHHHHHHHHhCCCceEEEE
Confidence 4679999999774 99999999998766 56666777665543
No 223
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=22.93 E-value=3e+02 Score=27.41 Aligned_cols=99 Identities=21% Similarity=0.193 Sum_probs=58.2
Q ss_pred ccccccH-HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhC-CC--CeEEEcchH-HHHHHHcCCCCEEEEcc--
Q 017312 183 TAGYGTA-LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHD-RI--PATLIADSA-AAALMKDGRVSAVIVGA-- 255 (373)
Q Consensus 183 t~g~~ta-l~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~-GI--~vtlI~Dsa-~~~~m~~~~vd~VivGA-- 255 (373)
|+|-|-. -.+++.+.++....+|++.+---+. |..-+...+... .. --.=|+|.. +..+|++.++|.|+==|
T Consensus 6 TGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYA-gn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~VvhfAAE 84 (340)
T COG1088 6 TGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYA-GNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVHFAAE 84 (340)
T ss_pred ecCcchHHHHHHHHHHhcCCCceEEEEeccccc-CCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEEechh
Confidence 3333444 2367777777777888888865554 322111223221 11 122356654 56778666788877433
Q ss_pred ---eeEecCCCe---ecccchHHHHHHHHhCCC
Q 017312 256 ---DRVAANGDT---ANKIGTYSLALCAKFHNI 282 (373)
Q Consensus 256 ---d~I~~nG~v---~nkiGT~~lA~~Ak~~~v 282 (373)
||=..+... -|-+||+.+--+|+.+..
T Consensus 85 SHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~ 117 (340)
T COG1088 85 SHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWG 117 (340)
T ss_pred ccccccccChhhhhhcchHHHHHHHHHHHHhcc
Confidence 222223322 388999999999999985
No 224
>PRK00148 Maf-like protein; Reviewed
Probab=22.93 E-value=5.7e+02 Score=23.33 Aligned_cols=40 Identities=20% Similarity=0.110 Sum_probs=31.5
Q ss_pred CCEEEEcceeEec-CCCeecccchHHHH--HHHHhCCCeEEEe
Q 017312 248 VSAVIVGADRVAA-NGDTANKIGTYSLA--LCAKFHNILFYVA 287 (373)
Q Consensus 248 vd~VivGAd~I~~-nG~v~nkiGT~~lA--~~Ak~~~vPvyV~ 287 (373)
-+.+++|||.|.. ||-+..|-.+..=| ++-+..|.+..|.
T Consensus 60 ~~~~vI~aDTvV~~~g~Il~KP~~~eeA~~~L~~lsG~~h~v~ 102 (194)
T PRK00148 60 PDAVVLGCDSMLLIDGRLLGKPHTPEEAIERWQQMSGRTGELY 102 (194)
T ss_pred CCCEEEEeCcEEEECCEEecCCCCHHHHHHHHHHhCCCCcEEE
Confidence 4679999999776 99999999998766 5666667765554
No 225
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=22.92 E-value=1.7e+02 Score=28.77 Aligned_cols=93 Identities=12% Similarity=0.023 Sum_probs=59.4
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCC--eec
Q 017312 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGD--TAN 266 (373)
Q Consensus 189 al~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~--v~n 266 (373)
+...+.+|.++|.+.-|+++|.=|...=.++ .+++.+.| +++|==|.-+-+. +..-++=+=...|+.-|. +++
T Consensus 78 aadai~EAida~i~liv~ITEgIP~~D~~~~-~~~a~~~g--~~iiGPncpGiI~--Pg~~kiGimp~~i~~~G~IGiVS 152 (293)
T COG0074 78 AADAILEAIDAGIKLVVIITEGIPVLDMLEL-KRYAREKG--TRLIGPNCPGIIT--PGECKIGIMPGNIYKPGNIGIVS 152 (293)
T ss_pred HHHHHHHHHhCCCcEEEEEeCCCCHHHHHHH-HHHHHhcC--CEEECCCCCccCc--CCcceeeechhhhccCCceEEEe
Confidence 5556677888899999999999999876555 44566777 5666555555554 444322221266777776 478
Q ss_pred ccchH--HHHHHHHhCCCeEEE
Q 017312 267 KIGTY--SLALCAKFHNILFYV 286 (373)
Q Consensus 267 kiGT~--~lA~~Ak~~~vPvyV 286 (373)
|.||+ .++--=.+.|.=++-
T Consensus 153 rSGTLTyE~~~qlt~~G~GqS~ 174 (293)
T COG0074 153 RSGTLTYEAVSQLTEAGLGQST 174 (293)
T ss_pred cCcchHHHHHHHHHhcCCceEE
Confidence 88864 455444444554443
No 226
>PRK15456 universal stress protein UspG; Provisional
Probab=22.78 E-value=1.2e+02 Score=25.23 Aligned_cols=40 Identities=13% Similarity=0.262 Sum_probs=27.6
Q ss_pred HcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 244 KDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 244 ~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
++.++|.+++|+.+= ..+.. -+|+-.-.+ .++-..||+|+
T Consensus 102 ~~~~~DLIVmG~~g~-~~~~~--llGS~a~~v-~~~a~~pVLvV 141 (142)
T PRK15456 102 EELGADVVVIGSRNP-SISTH--LLGSNASSV-IRHANLPVLVV 141 (142)
T ss_pred hhcCCCEEEEcCCCC-Cccce--ecCccHHHH-HHcCCCCEEEe
Confidence 457999999999862 22222 257665444 77788999986
No 227
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.78 E-value=6.1e+02 Score=26.00 Aligned_cols=78 Identities=10% Similarity=0.047 Sum_probs=45.4
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccch
Q 017312 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGT 270 (373)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT 270 (373)
.+.+.+.+.| ..|.+.|.+|...-..++. +|.+.|+.+..-.+. .-.+ .+.|.||+.. .|-. +
T Consensus 28 a~a~~L~~~G--~~V~~~D~~~~~~~~~~~~-~l~~~gi~~~~~~~~--~~~~--~~~dlVV~Sp-gi~~---------~ 90 (458)
T PRK01710 28 PLIKFLVKLG--AKVTAFDKKSEEELGEVSN-ELKELGVKLVLGENY--LDKL--DGFDVIFKTP-SMRI---------D 90 (458)
T ss_pred HHHHHHHHCC--CEEEEECCCCCccchHHHH-HHHhCCCEEEeCCCC--hHHh--ccCCEEEECC-CCCC---------C
Confidence 3445556666 4788888776432112223 488889877654432 2334 6788887753 2222 2
Q ss_pred HHHHHHHHhCCCeEE
Q 017312 271 YSLALCAKFHNILFY 285 (373)
Q Consensus 271 ~~lA~~Ak~~~vPvy 285 (373)
.+.-..|++.|+|++
T Consensus 91 ~p~~~~a~~~~i~i~ 105 (458)
T PRK01710 91 SPELVKAKEEGAYIT 105 (458)
T ss_pred chHHHHHHHcCCcEE
Confidence 345666777777775
No 228
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=22.61 E-value=3e+02 Score=24.64 Aligned_cols=69 Identities=10% Similarity=-0.065 Sum_probs=39.2
Q ss_pred HHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCC-CeecccchHHHHHHHHhCCCeEEEeccCcc
Q 017312 219 LTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANG-DTANKIGTYSLALCAKFHNILFYVAAPLTS 292 (373)
Q Consensus 219 lta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG-~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k 292 (373)
..++.|.+.|++++++.+.. -+ .+.|.|+++--.....- ......|....-.-+.+.++|++-+|--+-
T Consensus 13 ~~~~~l~~~g~~v~v~~~~~---~l--~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~q 82 (198)
T cd01748 13 SVANALERLGAEVIITSDPE---EI--LSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLGMQ 82 (198)
T ss_pred HHHHHHHHCCCeEEEEcChH---Hh--ccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHH
Confidence 34677888999998888643 24 57888877541110000 001123444444444557999997775443
No 229
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=22.51 E-value=4.2e+02 Score=23.92 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=23.8
Q ss_pred ccchHHHHHHHHhCCCeEEEeccCcccc
Q 017312 267 KIGTYSLALCAKFHNILFYVAAPLTSID 294 (373)
Q Consensus 267 kiGT~~lA~~Ak~~~vPvyV~a~~~k~~ 294 (373)
..|.|-...+|..+++|.+.+.|...+.
T Consensus 67 SlGG~~A~~La~~~~~~avLiNPav~p~ 94 (187)
T PF05728_consen 67 SLGGFYATYLAERYGLPAVLINPAVRPY 94 (187)
T ss_pred ChHHHHHHHHHHHhCCCEEEEcCCCCHH
Confidence 4688888899999999999999887653
No 230
>PRK15482 transcriptional regulator MurR; Provisional
Probab=22.35 E-value=4.6e+02 Score=24.91 Aligned_cols=63 Identities=16% Similarity=0.137 Sum_probs=39.5
Q ss_pred HHHHhhCCCCeEEEcchHHHHHHHc--CCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccC
Q 017312 221 AFELVHDRIPATLIADSAAAALMKD--GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 221 a~~L~~~GI~vtlI~Dsa~~~~m~~--~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
.+.|...|.+|.+..|......+.. ++=|.+|+ |.-.|.. --+..++-.||.+|+|++.++..
T Consensus 154 ~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~i~----iS~sg~t---~~~~~~~~~a~~~g~~iI~IT~~ 218 (285)
T PRK15482 154 SFKLMKIGYRVACEADTHVQATVSQALKKGDVQIA----ISYSGSK---KEIVLCAEAARKQGATVIAITSL 218 (285)
T ss_pred HHHHHhCCCeeEEeccHhHHHHHHhcCCCCCEEEE----EeCCCCC---HHHHHHHHHHHHCCCEEEEEeCC
Confidence 4456677888888777655433211 23355553 3334532 23567788899999999998754
No 231
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=22.09 E-value=4.3e+02 Score=21.56 Aligned_cols=60 Identities=18% Similarity=0.084 Sum_probs=37.5
Q ss_pred HhhC-CCCeEEEcchHHHHHHH--cCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccC
Q 017312 224 LVHD-RIPATLIADSAAAALMK--DGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 224 L~~~-GI~vtlI~Dsa~~~~m~--~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
|.+. |+++....|+...+.+. -.+=|.+|+ |..+| +..-+..++-.||+.|+|+++++..
T Consensus 21 l~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~I~----iS~SG---~t~~~~~~~~~a~~~g~~vi~iT~~ 83 (120)
T cd05710 21 LKKESKLPVFVYNAAEFLHTGPKRLTEKSVVIL----ASHSG---NTKETVAAAKFAKEKGATVIGLTDD 83 (120)
T ss_pred HHHhcCCceEEEcHHHHhhcCcccCCCCcEEEE----EeCCC---CChHHHHHHHHHHHcCCeEEEEECC
Confidence 4443 78888777765544320 033355543 44456 3445677788999999999998653
No 232
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=21.97 E-value=1.1e+02 Score=30.84 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=69.1
Q ss_pred cccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHH---HHHHhh-C-CCCeEEEcchHH--HHHHHcCCCCEEEEcceeE
Q 017312 186 YGTALGVIRALHSEGVLERAYCSETRPFNQGSRLT---AFELVH-D-RIPATLIADSAA--AALMKDGRVSAVIVGADRV 258 (373)
Q Consensus 186 ~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlt---a~~L~~-~-GI~vtlI~Dsa~--~~~m~~~~vd~VivGAd~I 258 (373)
+-++.++|+.|.+.+..+-+=+.++.=.+-|..+. +..+++ . .+||.+-.|-+- -.++ .-+ =.|-.+|
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~--~ai---~~GftSV 102 (347)
T PRK09196 28 LEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDHGNSPATCQ--RAI---QLGFTSV 102 (347)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHH--HHH---HcCCCEE
Confidence 45788999999887766555444443222343322 333443 4 499999999873 3333 333 3588999
Q ss_pred ecCCCee-----------cccchHHHHHHHHhCCCeEEEeccCccc
Q 017312 259 AANGDTA-----------NKIGTYSLALCAKFHNILFYVAAPLTSI 293 (373)
Q Consensus 259 ~~nG~v~-----------nkiGT~~lA~~Ak~~~vPvyV~a~~~k~ 293 (373)
+-||+-. |--=|..+.-.||.+|++|= +|.-.+
T Consensus 103 MiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VE--aELG~v 146 (347)
T PRK09196 103 MMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVE--GELGCL 146 (347)
T ss_pred EecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE--EEEeec
Confidence 9999988 88999999999999999876 454444
No 233
>CHL00148 orf27 Ycf27; Reviewed
Probab=21.93 E-value=4.3e+02 Score=23.27 Aligned_cols=83 Identities=12% Similarity=0.064 Sum_probs=49.6
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHH-HHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHh
Q 017312 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAA-LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF 279 (373)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~-~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~ 279 (373)
...+|.++|..|...- .....|...|..+....+...+. .++....|.+++..+ +.+ .-|--.+..+.+.
T Consensus 5 ~~~~ilivdd~~~~~~--~l~~~l~~~~~~v~~~~~~~~~l~~~~~~~~d~illd~~--~~~-----~~g~~~~~~l~~~ 75 (240)
T CHL00148 5 SKEKILVVDDEAYIRK--ILETRLSIIGYEVITASDGEEALKLFRKEQPDLVILDVM--MPK-----LDGYGVCQEIRKE 75 (240)
T ss_pred CCceEEEEeCCHHHHH--HHHHHHHHCCCEEEEeCCHHHHHHHHHhcCCCEEEEeCC--CCC-----CCHHHHHHHHHhc
Confidence 3467888888776532 23456777888877555443332 344567888887543 222 2344444455555
Q ss_pred CCCeEEEeccCcc
Q 017312 280 HNILFYVAAPLTS 292 (373)
Q Consensus 280 ~~vPvyV~a~~~k 292 (373)
.++|+++++....
T Consensus 76 ~~~~ii~ls~~~~ 88 (240)
T CHL00148 76 SDVPIIMLTALGD 88 (240)
T ss_pred CCCcEEEEECCCC
Confidence 6899998876443
No 234
>PRK00884 Maf-like protein; Reviewed
Probab=21.91 E-value=6.2e+02 Score=23.14 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=31.7
Q ss_pred CCEEEEcceeEec-CCCeecccchHHHH--HHHHhCCCeEEEe
Q 017312 248 VSAVIVGADRVAA-NGDTANKIGTYSLA--LCAKFHNILFYVA 287 (373)
Q Consensus 248 vd~VivGAd~I~~-nG~v~nkiGT~~lA--~~Ak~~~vPvyV~ 287 (373)
-+.+++|||.|.. ||.+..|=.+..-| ++-+..|.+..|.
T Consensus 61 ~~~~VI~aDTvV~~~g~ilgKP~~~eeA~~~L~~lsG~~h~V~ 103 (194)
T PRK00884 61 PDHLIIGSDQVCVLDGEITGKPLTEENARAQLRKASGNIVTFY 103 (194)
T ss_pred CCCEEEEeCeEEEECCEEecCCCCHHHHHHHHHHHCCCceEEE
Confidence 4779999999775 88899999998876 5677777766554
No 235
>PRK04056 Maf-like protein; Reviewed
Probab=21.88 E-value=5.9e+02 Score=22.93 Aligned_cols=80 Identities=13% Similarity=0.046 Sum_probs=47.6
Q ss_pred CCCeeEEEEe---cCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEec-CCCeecccchHHHH
Q 017312 199 EGVLERAYCS---ETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAA-NGDTANKIGTYSLA 274 (373)
Q Consensus 199 ~g~~~~V~v~---EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~-nG~v~nkiGT~~lA 274 (373)
.|.+|.|+.. |+.+..+...-.+..|++..- -.+.++..-+.+++|||.|.. ||.++.|=.+..-|
T Consensus 18 ~g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~Ka----------~~v~~~~~~~~~vI~aDTvV~~~g~ilgKP~~~~eA 87 (180)
T PRK04056 18 AGIEFEQKSLDFDEESIKKTSPKEFVYLAVKGKL----------EQFLKKYGNECNLLVADSVVSCGNKILRKAKDKEEA 87 (180)
T ss_pred CCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHH----------HHHHHhCCCCCEEEEeCEEEEECCEEecCCCCHHHH
Confidence 4888988743 544333222222444543221 112211122469999999875 88899999998765
Q ss_pred --HHHHhCCCeEEEec
Q 017312 275 --LCAKFHNILFYVAA 288 (373)
Q Consensus 275 --~~Ak~~~vPvyV~a 288 (373)
++-...|.+..|..
T Consensus 88 ~~~L~~lsg~~h~V~T 103 (180)
T PRK04056 88 REMLKLQSGNEISVLT 103 (180)
T ss_pred HHHHHHHCCCcEEEEE
Confidence 56666777766643
No 236
>PRK04694 Maf-like protein; Reviewed
Probab=21.88 E-value=4.8e+02 Score=23.72 Aligned_cols=82 Identities=15% Similarity=0.113 Sum_probs=48.6
Q ss_pred CCCeeEEEE---ecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEec-CCCeecccchHHHH
Q 017312 199 EGVLERAYC---SETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAA-NGDTANKIGTYSLA 274 (373)
Q Consensus 199 ~g~~~~V~v---~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~-nG~v~nkiGT~~lA 274 (373)
.|..|.|+. .|+.+..+.-+-.+..|+...-. ++...++...-+.+++|||.|+. ||.+..|=.+..-|
T Consensus 18 ~g~~f~~~~~~idE~~~~~~~p~~~v~~lA~~KA~-------~v~~~~~~~~~~~lvI~aDTvv~~~g~ilgKP~~~~eA 90 (190)
T PRK04694 18 LDVPFQTLQLDVPEVRAADESPDHYVQRVALEKAH-------AGLALVQAADADAIVLGSDTEVVLGERVFGKPVDVDDA 90 (190)
T ss_pred CCCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHHhhccCCCCEEEEeCeEEEECCEEecCCCCHHHH
Confidence 488888875 56543333222234444432210 11111211235789999999875 99999999998766
Q ss_pred --HHHHhCCCeEEEe
Q 017312 275 --LCAKFHNILFYVA 287 (373)
Q Consensus 275 --~~Ak~~~vPvyV~ 287 (373)
++-+..|....|.
T Consensus 91 ~~~L~~lsG~~h~V~ 105 (190)
T PRK04694 91 IAMLRALSGRTHQVL 105 (190)
T ss_pred HHHHHHhCCCceEEE
Confidence 5666667655553
No 237
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=21.80 E-value=1.5e+02 Score=29.02 Aligned_cols=98 Identities=10% Similarity=-0.070 Sum_probs=64.7
Q ss_pred cccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHH---HHH-HhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecC
Q 017312 186 YGTALGVIRALHSEGVLERAYCSETRPFNQGSRLT---AFE-LVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAAN 261 (373)
Q Consensus 186 ~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlt---a~~-L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~n 261 (373)
+-++.++++.|.+.+...-+=+.++.=.+-|.... ++. ..+.++||.+-.|-+-.+-+-..-++. |-.+|+-|
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~---GFtSVM~D 104 (286)
T PRK12738 28 AETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHA---GVRSAMID 104 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHc---CCCeEeec
Confidence 46788999999888776544444432112232221 122 236799999999987332211133333 88999999
Q ss_pred CCee----cccchHHHHHHHHhCCCeEEE
Q 017312 262 GDTA----NKIGTYSLALCAKFHNILFYV 286 (373)
Q Consensus 262 G~v~----nkiGT~~lA~~Ak~~~vPvyV 286 (373)
|+-. |--=|-.+.-.||.+|++|=.
T Consensus 105 gS~lp~eeNi~~T~evv~~Ah~~gv~VEa 133 (286)
T PRK12738 105 GSHFPFAENVKLVKSVVDFCHSQDCSVEA 133 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 9875 778899999999999998754
No 238
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=21.76 E-value=7e+02 Score=23.75 Aligned_cols=89 Identities=17% Similarity=0.156 Sum_probs=0.0
Q ss_pred ccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCC----eEEEc---chHHHHHHHcCCCCEEEE
Q 017312 181 LATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP----ATLIA---DSAAAALMKDGRVSAVIV 253 (373)
Q Consensus 181 lat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~----vtlI~---Dsa~~~~m~~~~vd~Viv 253 (373)
+.|.|..++-.+.. ...+.++.+.|+ |..+... ...+.|+| +-.-. -..=-.+|++.++|.+
T Consensus 133 ~lttG~k~l~~f~~--~~~~~~~~~RvL---P~~~~l~----~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~l-- 201 (256)
T TIGR00715 133 FLTAGASWLSHFSL--SQDEAVVFVRVL---PYPQALA----QALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAV-- 201 (256)
T ss_pred EEecCcchHHHHhh--ccCCceEEEEEC---CCchhhH----HHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEE--
Q ss_pred cceeEecCCCeeccc-chHHHHHHHHhCCCeEEEe
Q 017312 254 GADRVAANGDTANKI-GTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 254 GAd~I~~nG~v~nki-GT~~lA~~Ak~~~vPvyV~ 287 (373)
|+.|.+- . |++.---+|++.|+||+|+
T Consensus 202 ----VtK~SG~---~Gg~~eKi~AA~~lgi~vivI 229 (256)
T TIGR00715 202 ----VTKASGE---QGGELEKVKAAEALGINVIRI 229 (256)
T ss_pred ----EEcCCCC---ccchHHHHHHHHHcCCcEEEE
No 239
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=21.71 E-value=8.3e+02 Score=26.31 Aligned_cols=20 Identities=20% Similarity=0.052 Sum_probs=13.3
Q ss_pred cchHHHHHHHHhCCCeEEEe
Q 017312 268 IGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 268 iGT~~lA~~Ak~~~vPvyV~ 287 (373)
++.....-.||++|+.|+|.
T Consensus 138 i~~~e~i~~a~~~gidvIVt 157 (575)
T PRK11070 138 ISSHAGVAHAHALGIPVLVT 157 (575)
T ss_pred cCCHHHHHHHHHCCCCEEEE
Confidence 34555556678888888774
No 240
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=21.71 E-value=3.9e+02 Score=21.72 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=36.6
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchH
Q 017312 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA 238 (373)
Q Consensus 168 ~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa 238 (373)
.++.++..++||.- .-++..++.|+++|.+.-++...+ .+ +..-.+.|+++..+++..
T Consensus 43 ~~dl~I~iS~SG~t-----~e~i~~~~~a~~~g~~iI~IT~~~-------~l-~~~~~~~~~~~~~~p~~~ 100 (119)
T cd05017 43 RKTLVIAVSYSGNT-----EETLSAVEQAKERGAKIVAITSGG-------KL-LEMAREHGVPVIIIPKGL 100 (119)
T ss_pred CCCEEEEEECCCCC-----HHHHHHHHHHHHCCCEEEEEeCCc-------hH-HHHHHHcCCcEEECCCCC
Confidence 57888989888632 236777888888876443333221 24 332334688888888754
No 241
>PRK06234 methionine gamma-lyase; Provisional
Probab=21.65 E-value=8.1e+02 Score=24.62 Aligned_cols=87 Identities=11% Similarity=0.130 Sum_probs=43.7
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchH-HHHHHHhhCCCCeEEEcch---HHHHHHHcCCCCEEEEcceeEecCCCeec
Q 017312 191 GVIRALHSEGVLERAYCSETRPFNQGSR-LTAFELVHDRIPATLIADS---AAAALMKDGRVSAVIVGADRVAANGDTAN 266 (373)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~r-lta~~L~~~GI~vtlI~Ds---a~~~~m~~~~vd~VivGAd~I~~nG~v~n 266 (373)
.++....+.|. +|++.. |.+.+.. +....+...|+++.++.-. .+...+ .++...|++- .---..|.+..
T Consensus 94 ~al~~ll~~Gd--~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~~i-~~~tklI~ie-sP~NPtG~v~d 167 (400)
T PRK06234 94 SSLWSALKAGD--HVVASD--TLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNAL-KANTKVVYLE-TPANPTLKVTD 167 (400)
T ss_pred HHHHHHhCCCC--EEEEec--CccchHHHHHHHHHhhCCeEEEEECCCCHHHHHHHh-ccCCeEEEEE-CCCCCCCCcCC
Confidence 34444444454 555544 5554322 2233456789998887532 233333 1344444432 11112343332
Q ss_pred ccchHHHHHHHHhC--CCeEEE
Q 017312 267 KIGTYSLALCAKFH--NILFYV 286 (373)
Q Consensus 267 kiGT~~lA~~Ak~~--~vPvyV 286 (373)
--.++-+||+| +++++|
T Consensus 168 ---l~~I~~la~~~~~~i~liv 186 (400)
T PRK06234 168 ---IKAISNIAHENNKECLVFV 186 (400)
T ss_pred ---HHHHHHHHHhcCCCCEEEE
Confidence 23677788887 777766
No 242
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=21.54 E-value=3.7e+02 Score=27.59 Aligned_cols=107 Identities=15% Similarity=0.143 Sum_probs=55.5
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCC
Q 017312 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRV 248 (373)
Q Consensus 169 ~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~v 248 (373)
..+||.-+-+|-+ | -.+++.+.++|. +|+++..........+ ..+.. .-.+.++.-......+ .++
T Consensus 120 ~mkILVTGatGFI-----G--s~Lv~~Ll~~G~--~V~~ldr~~~~~~~~~--~~~~~-~~~~~~~~~Di~~~~~--~~~ 185 (436)
T PLN02166 120 RLRIVVTGGAGFV-----G--SHLVDKLIGRGD--EVIVIDNFFTGRKENL--VHLFG-NPRFELIRHDVVEPIL--LEV 185 (436)
T ss_pred CCEEEEECCccHH-----H--HHHHHHHHHCCC--EEEEEeCCCCccHhHh--hhhcc-CCceEEEECccccccc--cCC
Confidence 4677776655433 1 234555666664 5666553221111111 11211 1133433322222234 578
Q ss_pred CEEEEcceeEecCCC--------eecccchHHHHHHHHhCCCeEEEecc
Q 017312 249 SAVIVGADRVAANGD--------TANKIGTYSLALCAKFHNILFYVAAP 289 (373)
Q Consensus 249 d~VivGAd~I~~nG~--------v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (373)
|.|+=-|-....... -.|-.||..+.-+|+.+++.|+.+..
T Consensus 186 D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS 234 (436)
T PLN02166 186 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTST 234 (436)
T ss_pred CEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
Confidence 888877643211110 16888999999999999998766543
No 243
>PRK08114 cystathionine beta-lyase; Provisional
Probab=21.54 E-value=4.1e+02 Score=27.07 Aligned_cols=84 Identities=11% Similarity=0.106 Sum_probs=44.5
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEc--c-hHHHHHHHcCCCCEEEEcceeEecCCCeecc
Q 017312 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA--D-SAAAALMKDGRVSAVIVGADRVAANGDTANK 267 (373)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~--D-sa~~~~m~~~~vd~VivGAd~I~~nG~v~nk 267 (373)
.++....+.|. +|++.. ..+..-.++....|.+.||+|+++. | ..+...++ ++. ++| =.+. ..|.
T Consensus 92 ~~~~~ll~~GD--~Vv~~~-~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~-~~T-rlV-~~Et------psNp 159 (395)
T PRK08114 92 NAILAFVEQGD--HVLMTG-TAYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQ-PNT-KVV-FLES------PGSI 159 (395)
T ss_pred HHHHHHcCCCC--EEEEeC-CCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcC-CCc-eEE-EEEC------CCCC
Confidence 34554555555 455553 2332222343345778899999885 2 23444452 233 332 2222 3344
Q ss_pred cch----HHHHHHHHhCC--CeEEE
Q 017312 268 IGT----YSLALCAKFHN--ILFYV 286 (373)
Q Consensus 268 iGT----~~lA~~Ak~~~--vPvyV 286 (373)
.|. ..++-+||.+| ++++|
T Consensus 160 ~~~v~DI~~Ia~ia~~~g~g~~lvV 184 (395)
T PRK08114 160 TMEVHDVPAIVAAVRSVNPDAVIMI 184 (395)
T ss_pred CCEeecHHHHHHHHHHhCCCCEEEE
Confidence 333 35778888885 88876
No 244
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=21.48 E-value=1.7e+02 Score=28.52 Aligned_cols=96 Identities=15% Similarity=0.073 Sum_probs=67.1
Q ss_pred cccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHH---HHH-hhCCCCeEEEcchHH--HHHHHcCCCCEEEEcceeEe
Q 017312 186 YGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTA---FEL-VHDRIPATLIADSAA--AALMKDGRVSAVIVGADRVA 259 (373)
Q Consensus 186 ~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta---~~L-~~~GI~vtlI~Dsa~--~~~m~~~~vd~VivGAd~I~ 259 (373)
+-++.++++.|.+.+..+-+=+.++.=.+.|....+ +.+ .+.++||.+-.|-+- -.++ .-++ .|-.+|.
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH~~~~e~i~--~ai~---~GftSVM 102 (284)
T PRK12857 28 MEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDHGTDFEQVM--KCIR---NGFTSVM 102 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH--HHHH---cCCCeEE
Confidence 467889999998877665555554432233443322 222 367899999999875 3444 3444 4999999
Q ss_pred cCCCee----cccchHHHHHHHHhCCCeEEE
Q 017312 260 ANGDTA----NKIGTYSLALCAKFHNILFYV 286 (373)
Q Consensus 260 ~nG~v~----nkiGT~~lA~~Ak~~~vPvyV 286 (373)
-||+-. |--=|-.+.-.||.+|++|=.
T Consensus 103 ~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEa 133 (284)
T PRK12857 103 IDGSKLPLEENIALTKKVVEIAHAVGVSVEA 133 (284)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999975 677788999999999988754
No 245
>PRK14368 Maf-like protein; Provisional
Probab=21.33 E-value=4e+02 Score=24.35 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=46.6
Q ss_pred CCCeeEEEE---ecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEec-CCCeecccchHHHH
Q 017312 199 EGVLERAYC---SETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAA-NGDTANKIGTYSLA 274 (373)
Q Consensus 199 ~g~~~~V~v---~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~-nG~v~nkiGT~~lA 274 (373)
.|..|.|+. .|+.+..+.-.-.+..|+... +-.+.+ ..-+.+++|||.|+. ||.+..|=.+..=|
T Consensus 23 ~g~~f~v~~~~iDE~~~~~~~p~~~v~~lA~~K----------A~~v~~-~~~~~~vI~aDTvV~~~g~ilgKP~~~~eA 91 (193)
T PRK14368 23 AGIEFDVVPADIPEEPLPGEEPVDHVLRLAREK----------ARAAAA-LAEGRFFIGADTIVVCDGEIMGKPKDEADA 91 (193)
T ss_pred CCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHH----------HHHHHH-hCCCCEEEEeCcEEEECCEEecCCCCHHHH
Confidence 588898874 354433322222234444321 111221 234789999999775 88899999998776
Q ss_pred --HHHHhCCCeEEEe
Q 017312 275 --LCAKFHNILFYVA 287 (373)
Q Consensus 275 --~~Ak~~~vPvyV~ 287 (373)
++-+..|.+..|.
T Consensus 92 ~~~L~~lsG~~h~v~ 106 (193)
T PRK14368 92 VRMLKKLSGVPHEVI 106 (193)
T ss_pred HHHHHHhCCCCcEEE
Confidence 4566666655543
No 246
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=21.24 E-value=4.2e+02 Score=23.53 Aligned_cols=81 Identities=6% Similarity=-0.057 Sum_probs=49.3
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHH-HHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHh-
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAA-LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF- 279 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~-~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~- 279 (373)
..+|.+.|..|.... .....|...|..+....+...+. .+.....|.|++...- .+ .-|--.+..+-+.
T Consensus 5 ~~~iLiv~d~~~~~~--~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l--~~-----~~g~~~~~~lr~~~ 75 (239)
T PRK09468 5 NYKILVVDDDMRLRA--LLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLML--PG-----EDGLSICRRLRSQN 75 (239)
T ss_pred CCeEEEEcCCHHHHH--HHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCC--CC-----CCHHHHHHHHHhcC
Confidence 356788888776532 23456888898888777665443 4555678999886542 22 1233333333332
Q ss_pred CCCeEEEeccCc
Q 017312 280 HNILFYVAAPLT 291 (373)
Q Consensus 280 ~~vPvyV~a~~~ 291 (373)
.++|++++++..
T Consensus 76 ~~~pii~ls~~~ 87 (239)
T PRK09468 76 NPTPIIMLTAKG 87 (239)
T ss_pred CCCCEEEEECCC
Confidence 478999987643
No 247
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=21.14 E-value=8.3e+02 Score=24.37 Aligned_cols=81 Identities=17% Similarity=0.094 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcc---hHHHHHHHcCCCCEEEEcceeEecCCCe
Q 017312 188 TALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD---SAAAALMKDGRVSAVIVGADRVAANGDT 264 (373)
Q Consensus 188 tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~D---sa~~~~m~~~~vd~VivGAd~I~~nG~v 264 (373)
.+....+.+.+-|......++...+...-.++ +.+. +-...++.| -.....+++.+.|.+|
T Consensus 297 ~~~~~~~~l~elG~~v~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~pdl~i------------ 360 (406)
T cd01967 297 RSWHVIAALRELGMEVVAAGYEFGHDDDYERI--RKIL--DEGTLLVDDYNDLELEELVEKLKPDLIL------------ 360 (406)
T ss_pred chHHHHHHHHHcCCEEEEEEEecCCHHHHHHH--HhcC--CCCcEEEeCCCHHHHHHHHHhcCCCEEE------------
Confidence 34455566667787665444443322111111 1111 223334433 3455566666777664
Q ss_pred ecccchHHHHHHHHhCCCeEEEec
Q 017312 265 ANKIGTYSLALCAKFHNILFYVAA 288 (373)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~vPvyV~a 288 (373)
|+..-...|+..|+|++...
T Consensus 361 ----g~~~~~~~a~~~gip~~~~~ 380 (406)
T cd01967 361 ----SGIKEKYVAQKLGIPFLDLH 380 (406)
T ss_pred ----eCCcchHHHHhcCCCEEecC
Confidence 23333456788899998654
No 248
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=21.07 E-value=2.2e+02 Score=25.72 Aligned_cols=82 Identities=7% Similarity=-0.084 Sum_probs=42.2
Q ss_pred eEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCee----cccchHHHHHHHH
Q 017312 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTA----NKIGTYSLALCAK 278 (373)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~----nkiGT~~lA~~Ak 278 (373)
+-|.+...-|.- ......+.|.+.|+++..+...... -+ .++|.++++-- .+... ...+-...-.-+.
T Consensus 3 i~vl~~~~~~~e-~~~~~~~~l~~~g~~~~~~~~~~~~-~l--~~~d~iii~GG----~~~~~~~~~~~~~~~~~i~~~~ 74 (200)
T PRK13527 3 IGVLALQGDVEE-HIDALKRALDELGIDGEVVEVRRPG-DL--PDCDALIIPGG----ESTTIGRLMKREGILDEIKEKI 74 (200)
T ss_pred EEEEEECCccHH-HHHHHHHHHHhcCCCeEEEEeCChH-Hh--ccCCEEEECCC----cHHHHHHHHhhccHHHHHHHHH
Confidence 345555543332 2233455677888877666544332 24 56777766542 11111 2223222323344
Q ss_pred hCCCeEEEeccCcc
Q 017312 279 FHNILFYVAAPLTS 292 (373)
Q Consensus 279 ~~~vPvyV~a~~~k 292 (373)
..++|++-+|--+-
T Consensus 75 ~~~~pilGIC~G~Q 88 (200)
T PRK13527 75 EEGLPILGTCAGLI 88 (200)
T ss_pred HCCCeEEEECHHHH
Confidence 57999998775444
No 249
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=21.07 E-value=7.2e+02 Score=23.56 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=38.6
Q ss_pred HHHhhCCCCeEEEcchHHH----HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCc
Q 017312 222 FELVHDRIPATLIADSAAA----ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (373)
Q Consensus 222 ~~L~~~GI~vtlI~Dsa~~----~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (373)
+.|...|+++.+..|.... ..+ .+=|.||+ +.-.|..-+ +..++-.||++|+|+++++...
T Consensus 160 ~~l~~~g~~~~~~~d~~~~~~~~~~~--~~~Dl~I~----iS~sG~t~~---~~~~~~~ak~~g~~ii~IT~~~ 224 (292)
T PRK11337 160 HKFLRIGVRCQAYDDAHIMLMSAALL--QEGDVVLV----VSHSGRTSD---VIEAVELAKKNGAKIICITNSY 224 (292)
T ss_pred HHHhhCCCeEEEcCCHHHHHHHHhcC--CCCCEEEE----EeCCCCCHH---HHHHHHHHHHCCCeEEEEeCCC
Confidence 3455667777777665432 223 45566654 333454332 6678889999999999987643
No 250
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=21.05 E-value=2e+02 Score=28.09 Aligned_cols=106 Identities=16% Similarity=0.102 Sum_probs=68.2
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHH---HHHH-hhCCCCeEEEcchHHH--H
Q 017312 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLT---AFEL-VHDRIPATLIADSAAA--A 241 (373)
Q Consensus 168 ~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlt---a~~L-~~~GI~vtlI~Dsa~~--~ 241 (373)
++.-|.-+.-. .+-++.++++.|.+.+...-+-+.++.=.+-|.... ++.+ .+.++||.+-.|.+.- .
T Consensus 16 ~~yaV~AfN~~------n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~ 89 (283)
T PRK07998 16 KHVLAGAFNTT------NLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLDHGKTFED 89 (283)
T ss_pred CCCEEEEEeeC------CHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECcCCCCHHH
Confidence 55556554211 235678899999887766554444432122243221 2222 4679999999998743 3
Q ss_pred HHHcCCCCEEEEcceeEecCCCee----cccchHHHHHHHHhCCCeE
Q 017312 242 LMKDGRVSAVIVGADRVAANGDTA----NKIGTYSLALCAKFHNILF 284 (373)
Q Consensus 242 ~m~~~~vd~VivGAd~I~~nG~v~----nkiGT~~lA~~Ak~~~vPv 284 (373)
++ .-++ .|.++|.-||+-. |--=|..+.-.||.+|+||
T Consensus 90 i~--~Ai~---~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 131 (283)
T PRK07998 90 VK--QAVR---AGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPV 131 (283)
T ss_pred HH--HHHH---cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 44 2233 3888888899864 6677889999999999996
No 251
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=20.99 E-value=2.6e+02 Score=28.67 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=33.3
Q ss_pred cHHHHHHHHHHCCCeeEEEEecC--CCCCcchHHHHHHHhhCCCCe-------EEEcchHHHHHHHcCCCCEEEEcceeE
Q 017312 188 TALGVIRALHSEGVLERAYCSET--RPFNQGSRLTAFELVHDRIPA-------TLIADSAAAALMKDGRVSAVIVGADRV 258 (373)
Q Consensus 188 tal~~l~~a~~~g~~~~V~v~Es--rP~~qG~rlta~~L~~~GI~v-------tlI~Dsa~~~~m~~~~vd~VivGAd~I 258 (373)
.+..+++.|++.|.. |+++.+ .+...+.+ +++.-+.+ .|..-..+-.+-++.++|.|+-|....
T Consensus 13 ~~~~~~~aa~~lG~~--vv~~~~~~d~~a~~~~-----~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~pg~g~~ 85 (449)
T TIGR00514 13 IALRILRACKELGIK--TVAVHSTADRDALHVL-----LADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHPGYGFL 85 (449)
T ss_pred HHHHHHHHHHHcCCe--EEEEEChhhhcccccc-----cCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEeCCCcc
Confidence 367788999887754 455443 22222322 22211110 111101233333557899998887544
Q ss_pred ecCC
Q 017312 259 AANG 262 (373)
Q Consensus 259 ~~nG 262 (373)
..|+
T Consensus 86 se~~ 89 (449)
T TIGR00514 86 SENA 89 (449)
T ss_pred ccCH
Confidence 4444
No 252
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=20.89 E-value=6.1e+02 Score=24.07 Aligned_cols=77 Identities=22% Similarity=0.132 Sum_probs=41.9
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHH-hhCCCCeEEEcch----------------------HHHHHHHcCC
Q 017312 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFEL-VHDRIPATLIADS----------------------AAAALMKDGR 247 (373)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L-~~~GI~vtlI~Ds----------------------a~~~~m~~~~ 247 (373)
.+.+.+.++|...+|+ ++|.... . ++ .+.|+++..++-. .+..++++.+
T Consensus 19 ~La~~L~~~g~eV~vv---~~~~~~~----~-~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~i~~~~ 90 (348)
T TIGR01133 19 AVAEELIKRGVEVLWL---GTKRGLE----K-RLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLKAVFQARRILKKFK 90 (348)
T ss_pred HHHHHHHhCCCEEEEE---eCCCcch----h-cccccCCCceEEEeccCcCCCChHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556666666554444 3443211 1 22 3468888776531 2334466677
Q ss_pred CCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEE
Q 017312 248 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYV 286 (373)
Q Consensus 248 vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV 286 (373)
.|.|+.- +... ....+++++..++|++.
T Consensus 91 pDvVi~~-------~~~~----~~~~~~~~~~~~~p~v~ 118 (348)
T TIGR01133 91 PDAVIGF-------GGYV----SGPAGLAAKLLGIPLFH 118 (348)
T ss_pred CCEEEEc-------CCcc----cHHHHHHHHHcCCCEEE
Confidence 8888652 2111 22334567888999964
No 253
>PRK13856 two-component response regulator VirG; Provisional
Probab=20.82 E-value=4e+02 Score=23.91 Aligned_cols=77 Identities=16% Similarity=0.134 Sum_probs=46.5
Q ss_pred EEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHH-HHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCC
Q 017312 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAA-LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNI 282 (373)
Q Consensus 204 ~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~-~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~v 282 (373)
+|.++|..|... ......|...|..+....+...+. .++....|.|++...- ++++ |-..+..+-+...+
T Consensus 3 ~ILived~~~~~--~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~l--~~~~-----g~~l~~~i~~~~~~ 73 (241)
T PRK13856 3 HVLVIDDDVAMR--HLIVEYLTIHAFKVTAVADSQQFNRVLASETVDVVVVDLNL--GRED-----GLEIVRSLATKSDV 73 (241)
T ss_pred eEEEEeCCHHHH--HHHHHHHHHcCCEEEEECCHHHHHHHHhhCCCCEEEEeCCC--CCCC-----HHHHHHHHHhcCCC
Confidence 567777776653 223456778888887776665443 3455678999886532 3222 33333344444578
Q ss_pred eEEEecc
Q 017312 283 LFYVAAP 289 (373)
Q Consensus 283 PvyV~a~ 289 (373)
|+++++.
T Consensus 74 pii~lt~ 80 (241)
T PRK13856 74 PIIIISG 80 (241)
T ss_pred cEEEEEC
Confidence 9988764
No 254
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=20.71 E-value=1.5e+02 Score=26.83 Aligned_cols=12 Identities=42% Similarity=0.761 Sum_probs=7.8
Q ss_pred CCcEEEEecCCC
Q 017312 168 SKFSVLTHCNTG 179 (373)
Q Consensus 168 ~~~~ILT~~~sg 179 (373)
+|.+|+.||+.|
T Consensus 132 ~g~~V~vHC~GG 143 (168)
T PF05706_consen 132 NGRKVLVHCRGG 143 (168)
T ss_dssp TT--EEEE-SSS
T ss_pred cCCEEEEECCCC
Confidence 788999999975
No 255
>PLN02509 cystathionine beta-lyase
Probab=20.61 E-value=9e+02 Score=25.19 Aligned_cols=85 Identities=15% Similarity=0.152 Sum_probs=43.9
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcch-HHHHHHHhhCCCCeEEEcchHHHHHHH--cCCCCEEEEcceeEecCCCeec
Q 017312 190 LGVIRALHSEGVLERAYCSETRPFNQGS-RLTAFELVHDRIPATLIADSAAAALMK--DGRVSAVIVGADRVAANGDTAN 266 (373)
Q Consensus 190 l~~l~~a~~~g~~~~V~v~EsrP~~qG~-rlta~~L~~~GI~vtlI~Dsa~~~~m~--~~~vd~VivGAd~I~~nG~v~n 266 (373)
+..+..+.+.|. +|++ +.|.+.+. ++....+...|+.+..+...-...+-+ .++...|++ + ...|
T Consensus 161 i~~il~ll~~GD--~VI~--~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ai~~~TklV~l-------e-sPsN 228 (464)
T PLN02509 161 LSAVTHLIKNGE--EIVA--GDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQTKLVWL-------E-SPTN 228 (464)
T ss_pred HHHHHHHhCCCC--EEEE--cCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHHhCCcCCeEEEE-------E-CCCC
Confidence 333334444554 4555 45666553 232234567899888764322222221 123323322 1 2445
Q ss_pred ccchH----HHHHHHHhCCCeEEE
Q 017312 267 KIGTY----SLALCAKFHNILFYV 286 (373)
Q Consensus 267 kiGT~----~lA~~Ak~~~vPvyV 286 (373)
..|.. .++-+||+||++++|
T Consensus 229 PtG~i~Dl~~I~~lAk~~g~~lIV 252 (464)
T PLN02509 229 PRQQISDIRKIAEMAHAQGALVLV 252 (464)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEE
Confidence 55543 356779999999987
No 256
>PRK13937 phosphoheptose isomerase; Provisional
Probab=20.36 E-value=6.2e+02 Score=22.55 Aligned_cols=31 Identities=0% Similarity=-0.049 Sum_probs=21.1
Q ss_pred HHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEE
Q 017312 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIV 253 (373)
Q Consensus 221 a~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~Viv 253 (373)
++.+.+.|+++..|+.+.-+.+- +..|.+|.
T Consensus 126 ~~~ak~~g~~~I~iT~~~~s~L~--~~ad~~l~ 156 (188)
T PRK13937 126 LEKARELGMKTIGLTGRDGGKMK--ELCDHLLI 156 (188)
T ss_pred HHHHHHCCCeEEEEeCCCCChhH--HhCCEEEE
Confidence 45567788888888876655555 56666654
No 257
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=20.32 E-value=1.5e+02 Score=32.60 Aligned_cols=47 Identities=9% Similarity=0.080 Sum_probs=27.3
Q ss_pred ccHHHHHHHHHHCCCeeEEEEecCCCCCcchHH-HHHHHhhCCCCeEE
Q 017312 187 GTALGVIRALHSEGVLERAYCSETRPFNQGSRL-TAFELVHDRIPATL 233 (373)
Q Consensus 187 ~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rl-ta~~L~~~GI~vtl 233 (373)
+.++..|..|.++|++.+|+|-=-.=+.++..+ .++.|.++|+.|.|
T Consensus 371 s~ii~aL~~Aa~~Gk~V~v~veLkArfde~~ni~wa~~le~aG~~viy 418 (672)
T TIGR03705 371 SPIIDALIEAAENGKEVTVVVELKARFDEEANIRWARRLEEAGVHVVY 418 (672)
T ss_pred cHHHHHHHHHHHcCCEEEEEEEehhhccchhhHHHHHHHHHcCCEEEE
Confidence 456666777777788877777611111122111 24567778887776
No 258
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=20.28 E-value=2.6e+02 Score=25.15 Aligned_cols=102 Identities=20% Similarity=0.178 Sum_probs=46.9
Q ss_pred cEEEEecCCCccccccc-ccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcc---hHHHHHHHc
Q 017312 170 FSVLTHCNTGSLATAGY-GTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD---SAAAALMKD 245 (373)
Q Consensus 170 ~~ILT~~~sgslat~g~-~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~D---sa~~~~m~~ 245 (373)
..|-.||-| + |= -.+..+++...++....+|+++=+-|- |.++ +..+...++.+.+.|- .++..++++
T Consensus 22 ~~iWiHa~S--v---GE~~a~~~Li~~l~~~~p~~~illT~~T~t--g~~~-~~~~~~~~v~~~~~P~D~~~~~~rfl~~ 93 (186)
T PF04413_consen 22 PLIWIHAAS--V---GEVNAARPLIKRLRKQRPDLRILLTTTTPT--GREM-ARKLLPDRVDVQYLPLDFPWAVRRFLDH 93 (186)
T ss_dssp T-EEEE-SS--H---HHHHHHHHHHHHHTT---TS-EEEEES-CC--HHHH-HHGG-GGG-SEEE---SSHHHHHHHHHH
T ss_pred CcEEEEECC--H---HHHHHHHHHHHHHHHhCCCCeEEEEecCCc--hHHH-HHHhCCCCeEEEEeCccCHHHHHHHHHH
Confidence 789999854 1 11 123446666666666778888776554 5554 3444445888988884 234556655
Q ss_pred CCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccC
Q 017312 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 246 ~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
-+.+.+|+-=--+-+ ++-..|+..|||++.+-..
T Consensus 94 ~~P~~~i~~EtElWP-----------nll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 94 WRPDLLIWVETELWP-----------NLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp H--SEEEEES----H-----------HHHHH-----S-EEEEEE-
T ss_pred hCCCEEEEEccccCH-----------HHHHHHhhcCCCEEEEeee
Confidence 566765443222333 4567789999999987654
No 259
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=20.23 E-value=4.2e+02 Score=24.63 Aligned_cols=63 Identities=10% Similarity=0.025 Sum_probs=40.2
Q ss_pred HHHHhhCCCCeEEEcchHHHHHHH--cCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccC
Q 017312 221 AFELVHDRIPATLIADSAAAALMK--DGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 221 a~~L~~~GI~vtlI~Dsa~~~~m~--~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
++.|...|+++.++.|+...+.+. -.+=|.+|+ |..+|. .-=+..++-.||..|+|++.++..
T Consensus 19 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~----iS~sG~---t~~~~~~~~~a~~~g~~ii~iT~~ 83 (268)
T TIGR00393 19 VATFASTGTPSFFLHPTEAMHGDLGMVEPNDVVLM----ISYSGE---SLELLNLIPHLKRLSHKIIAFTGS 83 (268)
T ss_pred HHHHHhcCCceEEeCHhHHhhcccCCCCCCCEEEE----EeCCCC---CHHHHHHHHHHHHcCCcEEEEECC
Confidence 445777899998888765544210 033355543 334552 233556778899999999998864
No 260
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=20.20 E-value=7.2e+02 Score=23.28 Aligned_cols=111 Identities=21% Similarity=0.140 Sum_probs=60.4
Q ss_pred HHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC-eeEEE---Eec-C---CCCC-----cch-
Q 017312 152 AIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV-LERAY---CSE-T---RPFN-----QGS- 217 (373)
Q Consensus 152 ~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~-~~~V~---v~E-s---rP~~-----qG~- 217 (373)
.++..+.+.|. +.+|+..+- |.+ | -.+++.+...|. +++++ ++| + |-.+ -|.
T Consensus 21 ~~g~~~Q~~L~------~~~VliiG~-Ggl-----G--s~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~ 86 (245)
T PRK05690 21 GFDFDGQEKLK------AARVLVVGL-GGL-----G--CAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQP 86 (245)
T ss_pred hcCHHHHHHhc------CCeEEEECC-CHH-----H--HHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCCh
Confidence 45667777787 356666653 433 2 223444445575 34444 122 1 1111 021
Q ss_pred --HHHHHHHhhCC--CCeEEEc----chHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 218 --RLTAFELVHDR--IPATLIA----DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 218 --rlta~~L~~~G--I~vtlI~----Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
...++.|.+.+ +.+..+. ......++ +++|.||...|.. ---+.+.-+|+.+++|++..
T Consensus 87 Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~--~~~DiVi~~~D~~---------~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 87 KVESARAALARINPHIAIETINARLDDDELAALI--AGHDLVLDCTDNV---------ATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHH--hcCCEEEecCCCH---------HHHHHHHHHHHHhCCEEEEe
Confidence 12244565443 4444433 22344556 7899998888743 12356778899999999875
No 261
>PRK12388 fructose-1,6-bisphosphatase II-like protein; Reviewed
Probab=20.18 E-value=2e+02 Score=28.64 Aligned_cols=46 Identities=15% Similarity=0.075 Sum_probs=33.0
Q ss_pred HHHHHCCC---eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHH
Q 017312 194 RALHSEGV---LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALM 243 (373)
Q Consensus 194 ~~a~~~g~---~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m 243 (373)
..|...|+ .++|+|++ ||.+|. | -.++++.|..+.+|+|.-++-.+
T Consensus 144 ~vA~algk~v~dltV~vLd-RpRH~~--l-I~eiR~~GarI~Li~DGDVa~ai 192 (321)
T PRK12388 144 NVARALGKPLDKLRMVTLD-KPRLSA--A-IEEATQLGVKVFALPDGDVAASV 192 (321)
T ss_pred HHHHHcCCChhHeEEEEEc-CchHHH--H-HHHHHHcCCeEEEeccccHHHHH
Confidence 34455565 35666665 999874 5 46899999999999997664433
No 262
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=20.13 E-value=4.6e+02 Score=24.27 Aligned_cols=81 Identities=19% Similarity=0.123 Sum_probs=50.0
Q ss_pred ccccHHHHHHHHHHCCC---eeEEE-EecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEec
Q 017312 185 GYGTALGVIRALHSEGV---LERAY-CSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAA 260 (373)
Q Consensus 185 g~~tal~~l~~a~~~g~---~~~V~-v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~ 260 (373)
|.|+-+..|-.+-+.|. +-.|. |.-.+-.-.|. ..-.+.|||+.+|+-. +. |+|...
T Consensus 15 GtGsNlqaLid~~r~~~l~~~a~VvlviSnk~~~~GL----~rA~~~gIPt~vip~k---------~~------a~R~~~ 75 (206)
T KOG3076|consen 15 GTGSNLQALIDATRDGSLGPNADVVLVISNKKGVYGL----ERAADAGIPTLVIPHK---------RF------ASREKY 75 (206)
T ss_pred cCchhHHHHHHhhcCCCcCCCceEEEEEeccccchhh----hHHHHCCCCEEEeccc---------cc------cccccC
Confidence 33566666666666543 34444 44444333342 2457899999888764 11 555554
Q ss_pred CCCeecccchHHHHHHHHhCCCeEEEeccCccc
Q 017312 261 NGDTANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (373)
Q Consensus 261 nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~ 293 (373)
+ .-++..=+++++-|+|+|...++
T Consensus 76 d---------~eL~~~l~e~~~d~v~lAG~M~i 99 (206)
T KOG3076|consen 76 D---------NELAEVLLELGTDLVCLAGYMRI 99 (206)
T ss_pred c---------HHHHHHHHHhCCCEEEehhhHHH
Confidence 4 56777778889999998887664
No 263
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=20.11 E-value=6.3e+02 Score=26.07 Aligned_cols=102 Identities=18% Similarity=0.062 Sum_probs=63.1
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcc-------hHHHHH
Q 017312 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD-------SAAAAL 242 (373)
Q Consensus 170 ~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~D-------sa~~~~ 242 (373)
+.|+|.+. --++..+..+.-+ .=..+++|. |.+.|..- .+...|+++.-|+- .+.-..
T Consensus 157 ~IiiT~G~---------q~al~l~~~~l~~--pGd~v~vE~-PtY~~~~~---~~~~~g~~~~~vp~d~~G~~~e~le~~ 221 (459)
T COG1167 157 QIVITSGA---------QQALDLLLRLLLD--PGDTVLVED-PTYPGALQ---ALEALGARVIPVPVDEDGIDPEALEEA 221 (459)
T ss_pred eEEEeCCH---------HHHHHHHHHHhCC--CCCEEEEcC-CCcHHHHH---HHHHcCCcEEecCCCCCCCCHHHHHHH
Confidence 56777531 2345544444322 113455664 66666532 35566766665542 234455
Q ss_pred HHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEE
Q 017312 243 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYV 286 (373)
Q Consensus 243 m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV 286 (373)
+++.++.++.+=...=.+-|.++.---=..+.-+|++|+++++=
T Consensus 222 ~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIE 265 (459)
T COG1167 222 LAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIE 265 (459)
T ss_pred HhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEe
Confidence 65557888888777777777777777777888889999998773
No 264
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=20.07 E-value=5.1e+02 Score=26.16 Aligned_cols=76 Identities=20% Similarity=0.118 Sum_probs=40.2
Q ss_pred eEEEEecCCCCCcchHHHHHHH-hhCCCCeEEEcch-------HHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHH
Q 017312 203 ERAYCSETRPFNQGSRLTAFEL-VHDRIPATLIADS-------AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA 274 (373)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~~L-~~~GI~vtlI~Ds-------a~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA 274 (373)
-+|++.+ |.+....-....+ ...|+++..++-. .+-..+ .+++..|++.. - ...|. ++. --.++
T Consensus 155 ~~Vlv~~--~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d~~~l~~~i-~~~t~~v~l~~-p-n~tG~-v~~--l~~I~ 226 (447)
T PRK00451 155 KKVLVSG--AVHPEYREVLKTYLKGQGIEVVEVPYEDGVTDLEALEAAV-DDDTAAVVVQY-P-NFFGV-IED--LEEIA 226 (447)
T ss_pred CEEEEeC--ccCHHHHHHHHHHHHhCCcEEEEecCCCCCCCHHHHHHhc-CCCeEEEEEEC-C-CCCCe-eCC--HHHHH
Confidence 4677754 4443222222222 2468888877532 122223 24455555543 2 33443 333 34578
Q ss_pred HHHHhCCCeEEE
Q 017312 275 LCAKFHNILFYV 286 (373)
Q Consensus 275 ~~Ak~~~vPvyV 286 (373)
-+||++|++|+|
T Consensus 227 ~~a~~~~~~~iv 238 (447)
T PRK00451 227 EIAHAGGALFIV 238 (447)
T ss_pred HHHHHCCCEEEE
Confidence 899999999988
No 265
>PRK09028 cystathionine beta-lyase; Provisional
Probab=20.00 E-value=9.2e+02 Score=24.42 Aligned_cols=82 Identities=13% Similarity=0.086 Sum_probs=46.0
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchH-HHHHHHhhCCCCeEEEc--c-hHHHHHHHcCCCCEEEEcceeEecCCCeecc
Q 017312 192 VIRALHSEGVLERAYCSETRPFNQGSR-LTAFELVHDRIPATLIA--D-SAAAALMKDGRVSAVIVGADRVAANGDTANK 267 (373)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~r-lta~~L~~~GI~vtlI~--D-sa~~~~m~~~~vd~VivGAd~I~~nG~v~nk 267 (373)
++....+.|. +|++. +|.+.+.. +....|...|+++.++. | ..+...+ .++...|++- ..-|.
T Consensus 92 ~l~all~~GD--~Vvv~--~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l-~~~TklV~le--------spsNP 158 (394)
T PRK09028 92 ALLSFLKAGD--HLLMV--DSCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELI-RPNTKVLFLE--------SPGSI 158 (394)
T ss_pred HHHHHhCCCC--EEEEE--CCCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhc-CcCceEEEEE--------CCCCC
Confidence 4444445554 56655 45555543 33335677899998764 2 3344444 2445445431 23344
Q ss_pred cch----HHHHHHHHhCCCeEEE
Q 017312 268 IGT----YSLALCAKFHNILFYV 286 (373)
Q Consensus 268 iGT----~~lA~~Ak~~~vPvyV 286 (373)
.|. -.++-+||+||++++|
T Consensus 159 tg~v~dl~~I~~la~~~g~~lvv 181 (394)
T PRK09028 159 TMEVQDVPTLSRIAHEHDIVVML 181 (394)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEE
Confidence 453 4567788999998876
Done!