Query 017312
Match_columns 373
No_of_seqs 251 out of 1445
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 12:24:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a0u_A Initiation factor 2B; S 100.0 3.5E-99 1E-103 750.4 39.4 364 6-372 9-383 (383)
2 2yvk_A Methylthioribose-1-phos 100.0 3E-100 1E-104 756.0 30.6 348 7-371 22-370 (374)
3 1t5o_A EIF2BD, translation ini 100.0 2.2E-98 8E-103 738.2 33.7 339 12-370 2-340 (351)
4 1t9k_A Probable methylthioribo 100.0 7.7E-98 3E-102 733.3 33.5 338 13-370 7-344 (347)
5 3a11_A Translation initiation 100.0 1.7E-84 5.8E-89 637.7 29.0 312 34-369 14-326 (338)
6 1vb5_A Translation initiation 100.0 1.9E-72 6.5E-77 539.2 25.1 269 41-357 4-272 (276)
7 3ecs_A Translation initiation 100.0 1.6E-68 5.5E-73 518.2 20.2 282 59-367 20-302 (315)
8 1w2w_B 5-methylthioribose-1-ph 100.0 1.9E-55 6.4E-60 399.5 11.2 168 200-368 2-190 (191)
9 1w2w_A 5-methylthioribose-1-ph 100.0 9.9E-47 3.4E-51 345.4 18.4 187 12-203 2-208 (211)
10 1uj6_A Ribose 5-phosphate isom 98.3 2.2E-06 7.6E-11 79.2 8.9 128 148-308 7-141 (227)
11 2f8m_A Ribose 5-phosphate isom 97.6 0.00027 9.2E-09 65.9 10.8 130 148-307 11-148 (244)
12 3kwm_A Ribose-5-phosphate isom 97.6 0.0002 7E-09 65.8 9.6 129 149-307 12-141 (224)
13 1m0s_A Ribose-5-phosphate isom 97.6 0.00011 3.6E-09 67.5 7.7 130 149-307 6-136 (219)
14 1lk5_A D-ribose-5-phosphate is 97.5 0.00029 1E-08 65.0 9.3 129 149-307 6-140 (229)
15 3l7o_A Ribose-5-phosphate isom 97.3 0.00084 2.9E-08 61.7 9.7 128 149-307 4-136 (225)
16 1o8b_A Ribose 5-phosphate isom 97.3 0.00014 5E-09 66.6 3.6 129 149-307 6-135 (219)
17 3hhe_A Ribose-5-phosphate isom 97.1 0.0016 5.5E-08 60.9 9.3 128 149-307 27-158 (255)
18 2pjm_A Ribose-5-phosphate isom 97.0 0.0047 1.6E-07 56.8 10.9 128 149-307 6-139 (226)
19 3uw1_A Ribose-5-phosphate isom 96.8 0.007 2.4E-07 56.0 10.4 132 150-307 15-147 (239)
20 1xtz_A Ribose-5-phosphate isom 96.8 0.0039 1.3E-07 58.6 8.9 131 149-307 21-165 (264)
21 1b93_A Protein (methylglyoxal 84.3 2.9 9.9E-05 35.8 7.4 74 202-287 39-119 (152)
22 1poi_B Glutaconate coenzyme A- 83.2 3.8 0.00013 38.0 8.4 95 149-265 7-116 (260)
23 4gmk_A Ribose-5-phosphate isom 83.2 3.3 0.00011 37.8 7.7 122 150-306 8-138 (228)
24 3rrl_B Succinyl-COA:3-ketoacid 81.1 2.7 9.2E-05 37.7 6.3 98 150-266 2-111 (207)
25 2yvq_A Carbamoyl-phosphate syn 80.2 3.3 0.00011 34.7 6.2 82 189-286 39-130 (143)
26 3ixq_A Ribose-5-phosphate isom 78.6 5.9 0.0002 36.0 7.7 127 151-307 8-139 (226)
27 2lpm_A Two-component response 75.8 2.9 9.9E-05 34.1 4.4 80 200-289 6-87 (123)
28 1vmd_A MGS, methylglyoxal synt 75.6 6 0.00021 34.7 6.6 74 202-287 55-135 (178)
29 2xw6_A MGS, methylglyoxal synt 71.4 6.5 0.00022 32.8 5.5 73 202-286 31-110 (134)
30 3s3t_A Nucleotide-binding prot 70.4 37 0.0013 26.7 10.8 60 224-287 78-145 (146)
31 3d3u_A 4-hydroxybutyrate COA-t 69.1 74 0.0025 31.3 13.7 85 246-357 304-399 (439)
32 3tqr_A Phosphoribosylglycinami 69.1 15 0.00051 33.0 7.9 71 185-259 14-96 (215)
33 3k6m_A Succinyl-COA:3-ketoacid 64.9 18 0.00061 36.5 8.3 102 148-267 261-374 (481)
34 2oas_A ATOA, 4-hydroxybutyrate 64.8 70 0.0024 31.6 12.5 89 241-357 293-393 (436)
35 3f6p_A Transcriptional regulat 63.7 18 0.00062 27.6 6.6 79 203-290 3-82 (120)
36 2hj0_A Putative citrate lyase, 62.5 57 0.002 33.1 11.6 76 246-357 365-452 (519)
37 3i6i_A Putative leucoanthocyan 62.5 33 0.0011 31.7 9.3 102 171-288 12-118 (346)
38 4ds3_A Phosphoribosylglycinami 60.7 19 0.00065 32.1 6.8 71 185-259 16-99 (209)
39 3cwc_A Putative glycerate kina 59.5 5.1 0.00018 39.3 3.1 49 241-293 283-331 (383)
40 1wv2_A Thiazole moeity, thiazo 59.1 33 0.0011 31.8 8.3 114 168-292 72-198 (265)
41 3da8_A Probable 5'-phosphoribo 58.9 21 0.00072 31.9 6.9 71 185-259 21-102 (215)
42 2gm3_A Unknown protein; AT3G01 58.4 20 0.00068 29.6 6.3 66 224-293 96-167 (175)
43 3gt7_A Sensor protein; structu 58.3 37 0.0013 27.1 7.8 83 200-291 5-91 (154)
44 3eh7_A 4-hydroxybutyrate COA-t 58.0 1.4E+02 0.0047 29.5 13.3 20 338-357 383-402 (434)
45 1meo_A Phosophoribosylglycinam 58.0 25 0.00087 31.2 7.2 71 185-259 9-92 (209)
46 3h5i_A Response regulator/sens 57.3 49 0.0017 25.7 8.3 82 202-291 5-88 (140)
47 2pln_A HP1043, response regula 56.9 45 0.0015 25.7 7.9 79 199-290 15-95 (137)
48 3kcq_A Phosphoribosylglycinami 55.2 27 0.00092 31.2 6.9 71 185-259 17-95 (215)
49 1jw9_B Molybdopterin biosynthe 55.2 62 0.0021 29.0 9.5 110 153-288 21-153 (249)
50 3p9x_A Phosphoribosylglycinami 54.3 44 0.0015 29.8 8.1 71 185-260 11-95 (211)
51 3qli_A Coenzyme A transferase; 53.9 1.5E+02 0.0053 29.4 12.8 87 242-357 325-422 (455)
52 3rsc_A CALG2; TDP, enediyne, s 53.9 31 0.0011 32.5 7.6 84 189-293 37-152 (415)
53 3dqp_A Oxidoreductase YLBE; al 53.9 19 0.00064 31.0 5.6 51 238-290 56-106 (219)
54 3tsa_A SPNG, NDP-rhamnosyltran 53.8 25 0.00086 32.9 6.9 36 190-234 19-54 (391)
55 3ia7_A CALG4; glycosysltransfe 53.7 32 0.0011 32.0 7.6 83 190-293 22-136 (402)
56 3hgm_A Universal stress protei 53.5 37 0.0013 26.7 7.0 61 223-287 78-147 (147)
57 2rjn_A Response regulator rece 53.2 50 0.0017 26.0 7.8 82 201-291 6-89 (154)
58 3e8x_A Putative NAD-dependent 52.3 43 0.0015 29.0 7.8 106 169-291 21-132 (236)
59 3eod_A Protein HNR; response r 51.8 47 0.0016 25.2 7.2 82 201-291 6-89 (130)
60 4egb_A DTDP-glucose 4,6-dehydr 51.6 32 0.0011 31.6 7.1 113 168-290 23-149 (346)
61 2dum_A Hypothetical protein PH 51.5 32 0.0011 28.1 6.4 61 224-288 87-155 (170)
62 2qzj_A Two-component response 49.6 51 0.0018 25.5 7.2 81 202-291 4-85 (136)
63 1qkk_A DCTD, C4-dicarboxylate 49.2 36 0.0012 27.0 6.3 81 202-291 3-85 (155)
64 3rrl_A Succinyl-COA:3-ketoacid 49.0 32 0.0011 31.2 6.4 99 156-266 13-170 (235)
65 3rht_A (gatase1)-like protein; 48.2 11 0.00039 34.7 3.3 81 204-293 6-91 (259)
66 1zgz_A Torcad operon transcrip 48.0 72 0.0025 23.7 7.7 79 203-290 3-82 (122)
67 4fzr_A SSFS6; structural genom 47.7 33 0.0011 32.3 6.6 96 169-290 15-153 (398)
68 3t6k_A Response regulator rece 47.4 77 0.0026 24.5 7.9 81 202-291 4-88 (136)
69 3h4t_A Glycosyltransferase GTF 47.4 24 0.00083 33.6 5.7 17 274-290 109-125 (404)
70 3grc_A Sensor protein, kinase; 47.3 61 0.0021 24.9 7.3 81 202-291 6-90 (140)
71 2qxy_A Response regulator; reg 46.1 52 0.0018 25.4 6.7 80 202-291 4-85 (142)
72 2a9o_A Response regulator; ess 45.8 64 0.0022 23.8 7.0 78 204-290 3-81 (120)
73 1xhf_A DYE resistance, aerobic 45.3 87 0.003 23.2 7.8 79 203-290 4-83 (123)
74 3i42_A Response regulator rece 45.0 63 0.0022 24.3 6.9 81 202-291 3-87 (127)
75 3gl9_A Response regulator; bet 44.9 62 0.0021 24.5 6.9 79 203-290 3-85 (122)
76 2rdm_A Response regulator rece 44.7 89 0.003 23.5 7.8 82 202-291 5-89 (132)
77 2yva_A DNAA initiator-associat 44.6 1.4E+02 0.0047 25.0 12.5 38 246-290 108-145 (196)
78 2zay_A Response regulator rece 44.3 53 0.0018 25.5 6.5 83 200-291 6-92 (147)
79 1jkx_A GART;, phosphoribosylgl 44.1 61 0.0021 28.7 7.4 71 185-259 9-92 (212)
80 2wm3_A NMRA-like family domain 42.8 59 0.002 29.1 7.4 108 170-291 6-116 (299)
81 3m6m_D Sensory/regulatory prot 42.6 41 0.0014 26.5 5.6 81 201-290 13-99 (143)
82 2j48_A Two-component sensor ki 42.2 58 0.002 23.7 6.1 78 204-290 3-84 (119)
83 3ic5_A Putative saccharopine d 41.7 1.1E+02 0.0036 22.8 9.9 81 191-290 19-102 (118)
84 3mt0_A Uncharacterized protein 41.7 1.5E+02 0.0051 26.4 9.9 95 192-292 27-131 (290)
85 3cnb_A DNA-binding response re 41.7 76 0.0026 24.2 7.0 82 201-291 7-94 (143)
86 3hv2_A Response regulator/HD d 41.4 60 0.0021 25.6 6.5 83 200-291 12-96 (153)
87 3sho_A Transcriptional regulat 41.3 1.5E+02 0.0052 24.5 13.8 62 221-289 58-122 (187)
88 3rqi_A Response regulator prot 41.1 85 0.0029 25.8 7.6 81 202-291 7-89 (184)
89 3cg0_A Response regulator rece 40.9 45 0.0015 25.6 5.5 84 200-291 7-92 (140)
90 3cg4_A Response regulator rece 40.8 67 0.0023 24.7 6.6 82 201-291 6-91 (142)
91 3qli_A Coenzyme A transferase; 40.6 67 0.0023 32.1 7.7 96 155-265 30-158 (455)
92 3trj_A Phosphoheptose isomeras 40.5 1.7E+02 0.006 25.0 13.4 37 246-289 113-149 (201)
93 1qyd_A Pinoresinol-lariciresin 40.0 1.4E+02 0.0047 26.7 9.4 102 171-287 6-114 (313)
94 4ggj_A Mitochondrial cardiolip 39.8 41 0.0014 29.1 5.5 47 188-236 73-119 (196)
95 3nhm_A Response regulator; pro 38.9 87 0.003 23.6 6.9 80 202-291 4-87 (133)
96 2z5l_A Tylkr1, tylactone synth 38.7 1.3E+02 0.0044 30.1 9.7 97 192-290 275-391 (511)
97 3cpq_A 50S ribosomal protein L 38.6 38 0.0013 26.7 4.6 38 242-287 32-69 (110)
98 3n0v_A Formyltetrahydrofolate 37.9 69 0.0024 29.8 7.0 69 185-259 99-179 (286)
99 3ruf_A WBGU; rossmann fold, UD 37.8 57 0.0019 29.9 6.5 111 168-291 24-152 (351)
100 3dlo_A Universal stress protei 37.8 1.6E+02 0.0054 23.7 11.5 62 223-287 86-154 (155)
101 3g0t_A Putative aminotransfera 37.6 1.2E+02 0.0042 28.4 9.0 84 198-287 129-221 (437)
102 3hdg_A Uncharacterized protein 37.3 62 0.0021 24.8 5.8 82 201-291 6-89 (137)
103 1mvo_A PHOP response regulator 37.1 1E+02 0.0035 23.3 7.0 79 203-290 4-84 (136)
104 1jmv_A USPA, universal stress 37.0 1.4E+02 0.0049 23.0 9.3 59 224-288 73-137 (141)
105 3idf_A USP-like protein; unive 36.9 1.3E+02 0.0045 23.1 7.8 59 223-287 74-137 (138)
106 4dad_A Putative pilus assembly 36.9 21 0.00071 28.1 2.9 82 200-290 18-104 (146)
107 1zh2_A KDP operon transcriptio 36.5 95 0.0033 22.8 6.6 78 204-290 3-81 (121)
108 1jbe_A Chemotaxis protein CHEY 36.3 1.2E+02 0.0041 22.6 7.3 81 201-290 3-88 (128)
109 3kht_A Response regulator; PSI 36.1 1.3E+02 0.0044 23.1 7.6 82 201-291 4-91 (144)
110 1byr_A Protein (endonuclease); 36.1 87 0.003 25.1 6.7 48 188-235 41-88 (155)
111 3lte_A Response regulator; str 35.8 1.3E+02 0.0044 22.6 7.4 54 201-256 5-59 (132)
112 3lou_A Formyltetrahydrofolate 35.7 67 0.0023 30.0 6.5 70 185-260 104-185 (292)
113 3ixl_A Amdase, arylmalonate de 35.5 1.4E+02 0.0047 26.7 8.4 84 189-286 105-210 (240)
114 3llv_A Exopolyphosphatase-rela 35.2 64 0.0022 25.5 5.6 78 192-287 21-101 (141)
115 2gkg_A Response regulator homo 35.2 75 0.0026 23.6 5.8 77 203-287 6-86 (127)
116 1x92_A APC5045, phosphoheptose 35.0 2E+02 0.0069 24.1 10.2 33 221-255 133-168 (199)
117 3fdx_A Putative filament prote 34.4 66 0.0023 25.0 5.6 44 239-287 98-142 (143)
118 2ahu_A Putative enzyme YDIF; C 34.1 63 0.0022 32.8 6.5 176 150-354 288-473 (531)
119 3heb_A Response regulator rece 33.8 1.4E+02 0.0047 23.3 7.5 83 201-292 3-100 (152)
120 3otg_A CALG1; calicheamicin, T 33.7 1.5E+02 0.0051 27.5 8.9 54 170-236 21-75 (412)
121 2hj0_A Putative citrate lyase, 33.4 3.9E+02 0.013 26.9 13.5 121 156-287 54-206 (519)
122 1dbw_A Transcriptional regulat 33.1 1.5E+02 0.0051 22.1 7.4 79 203-290 4-84 (126)
123 3tnj_A Universal stress protei 33.0 1.7E+02 0.0059 22.7 9.5 46 239-288 101-146 (150)
124 3mm4_A Histidine kinase homolo 32.8 1.1E+02 0.0037 25.9 7.0 81 201-290 60-160 (206)
125 3s2u_A UDP-N-acetylglucosamine 32.7 2.1E+02 0.0072 26.6 9.7 81 189-287 19-121 (365)
126 2pl1_A Transcriptional regulat 32.6 1.1E+02 0.0038 22.5 6.4 78 204-290 2-81 (121)
127 3isl_A Purine catabolism prote 32.4 3E+02 0.01 25.3 11.6 87 192-287 78-172 (416)
128 2oas_A ATOA, 4-hydroxybutyrate 32.3 93 0.0032 30.6 7.3 95 156-265 11-128 (436)
129 2yv1_A Succinyl-COA ligase [AD 32.2 23 0.0008 33.0 2.7 95 187-286 81-179 (294)
130 3l9w_A Glutathione-regulated p 32.2 64 0.0022 31.5 6.0 86 185-288 11-102 (413)
131 1ys7_A Transcriptional regulat 32.1 1.5E+02 0.005 25.1 7.8 82 202-292 7-90 (233)
132 2qr3_A Two-component system re 32.0 55 0.0019 25.1 4.6 86 202-291 3-90 (140)
133 2yv2_A Succinyl-COA synthetase 31.5 29 0.00098 32.4 3.2 104 170-286 73-180 (297)
134 1to6_A Glycerate kinase; glyce 31.4 24 0.00081 34.4 2.6 48 241-293 274-321 (371)
135 2w48_A Sorbitol operon regulat 31.4 65 0.0022 29.9 5.7 96 150-256 92-213 (315)
136 2oqr_A Sensory transduction pr 31.3 1.1E+02 0.0037 25.9 6.9 81 203-292 5-86 (230)
137 2g39_A Acetyl-COA hydrolase; c 31.0 2.8E+02 0.0096 27.7 10.7 98 156-265 20-142 (497)
138 3cvj_A Putative phosphoheptose 31.0 2.7E+02 0.0091 24.3 9.8 31 221-253 128-169 (243)
139 2b4a_A BH3024; flavodoxin-like 30.7 1.1E+02 0.0036 23.4 6.2 82 200-290 13-98 (138)
140 1tq8_A Hypothetical protein RV 30.6 96 0.0033 25.3 6.1 62 223-288 89-157 (163)
141 3snk_A Response regulator CHEY 30.6 44 0.0015 25.7 3.8 83 200-291 12-97 (135)
142 1kgs_A DRRD, DNA binding respo 30.5 1.5E+02 0.0052 24.8 7.7 81 203-292 3-85 (225)
143 2jl1_A Triphenylmethane reduct 30.4 1E+02 0.0035 27.1 6.8 89 192-290 16-107 (287)
144 3r0j_A Possible two component 30.4 1.2E+02 0.0042 26.2 7.2 83 200-291 21-105 (250)
145 2gwr_A DNA-binding response re 30.4 1E+02 0.0036 26.4 6.6 81 202-291 5-86 (238)
146 3h1g_A Chemotaxis protein CHEY 30.3 1.7E+02 0.0057 22.0 7.3 80 202-290 5-90 (129)
147 3jte_A Response regulator rece 30.2 1.8E+02 0.0062 22.1 7.8 80 203-291 4-87 (143)
148 1oi7_A Succinyl-COA synthetase 30.0 23 0.0008 32.9 2.3 96 187-287 75-174 (288)
149 2ri0_A Glucosamine-6-phosphate 30.0 2.7E+02 0.0094 24.1 10.2 107 152-270 12-139 (234)
150 1yio_A Response regulatory pro 29.9 1.4E+02 0.0048 24.7 7.3 81 202-291 4-86 (208)
151 2hqr_A Putative transcriptiona 29.7 1.4E+02 0.0049 25.0 7.4 75 204-291 2-78 (223)
152 3loq_A Universal stress protei 29.5 2.8E+02 0.0096 24.5 9.7 91 194-288 192-289 (294)
153 2jba_A Phosphate regulon trans 29.4 84 0.0029 23.5 5.2 80 203-291 3-86 (127)
154 2r6j_A Eugenol synthase 1; phe 29.4 1.5E+02 0.005 26.7 7.7 97 171-287 13-113 (318)
155 3hzh_A Chemotaxis response reg 29.3 82 0.0028 25.0 5.4 82 200-290 34-120 (157)
156 3dhn_A NAD-dependent epimerase 29.2 1.1E+02 0.0038 25.9 6.5 89 191-290 19-112 (227)
157 2ywr_A Phosphoribosylglycinami 29.1 1.4E+02 0.0048 26.2 7.3 71 186-260 11-94 (216)
158 3r8n_K 30S ribosomal protein S 29.1 74 0.0025 25.7 4.9 46 189-237 55-101 (117)
159 3av3_A Phosphoribosylglycinami 28.8 1.8E+02 0.0063 25.4 8.0 69 187-259 14-95 (212)
160 1xr4_A Putative citrate lyase 28.5 4.1E+02 0.014 26.6 11.4 120 155-287 50-203 (509)
161 3auf_A Glycinamide ribonucleot 28.3 1.6E+02 0.0056 26.2 7.6 69 187-260 33-115 (229)
162 3o1l_A Formyltetrahydrofolate 28.3 1.6E+02 0.0053 27.6 7.7 70 185-260 114-195 (302)
163 1a9x_A Carbamoyl phosphate syn 28.1 83 0.0028 34.7 6.6 62 220-287 977-1043(1073)
164 2nvv_A Acetyl-COA hydrolase/tr 28.1 3.4E+02 0.012 27.2 10.7 99 156-265 10-137 (506)
165 1s8n_A Putative antiterminator 28.0 1.3E+02 0.0046 24.9 6.8 82 201-291 12-95 (205)
166 2fr1_A Erythromycin synthase, 27.4 2.6E+02 0.009 27.5 9.7 97 192-290 242-361 (486)
167 4gx0_A TRKA domain protein; me 26.9 67 0.0023 32.3 5.3 72 203-288 349-440 (565)
168 1qo0_D AMIR; binding protein, 26.9 37 0.0013 28.3 2.9 78 201-291 11-89 (196)
169 3to5_A CHEY homolog; alpha(5)b 26.8 50 0.0017 26.7 3.6 82 200-290 10-96 (134)
170 3ilh_A Two component response 26.5 2.1E+02 0.0072 21.6 7.9 84 199-291 6-102 (146)
171 3j21_Z 50S ribosomal protein L 26.5 77 0.0026 24.3 4.4 37 243-287 27-63 (99)
172 3foj_A Uncharacterized protein 26.5 86 0.0029 23.4 4.7 46 168-231 55-100 (100)
173 2z08_A Universal stress protei 26.4 1.1E+02 0.0037 23.7 5.5 45 239-287 91-136 (137)
174 1o1y_A Conserved hypothetical 26.4 63 0.0021 28.8 4.5 87 200-289 10-101 (239)
175 1m3s_A Hypothetical protein YC 26.3 83 0.0028 26.2 5.0 89 189-290 27-115 (186)
176 3lk7_A UDP-N-acetylmuramoylala 26.2 1.8E+02 0.0061 28.3 8.1 55 193-255 25-80 (451)
177 2cb1_A O-acetyl homoserine sul 26.1 3.2E+02 0.011 25.5 9.9 76 203-286 96-175 (412)
178 4f2d_A L-arabinose isomerase; 26.0 5E+02 0.017 25.9 12.4 77 170-255 74-183 (500)
179 2nu8_A Succinyl-COA ligase [AD 26.0 39 0.0013 31.3 3.0 104 170-286 66-173 (288)
180 3crn_A Response regulator rece 25.7 1.7E+02 0.0059 22.0 6.6 79 203-290 4-84 (132)
181 3m2p_A UDP-N-acetylglucosamine 25.6 86 0.0029 28.2 5.4 85 192-289 18-108 (311)
182 1k68_A Phytochrome response re 25.5 2E+02 0.007 21.4 7.0 80 203-291 3-95 (140)
183 3c3m_A Response regulator rece 25.5 1.9E+02 0.0066 21.9 6.9 79 203-290 4-86 (138)
184 2bfw_A GLGA glycogen synthase; 25.4 2.4E+02 0.0081 22.9 7.8 101 168-287 35-145 (200)
185 2x4g_A Nucleoside-diphosphate- 25.3 1.4E+02 0.0049 26.9 6.9 105 170-291 14-127 (342)
186 3f6c_A Positive transcription 25.3 87 0.003 23.7 4.7 80 203-291 2-84 (134)
187 2gas_A Isoflavone reductase; N 25.2 2.6E+02 0.009 24.6 8.6 56 223-287 51-110 (307)
188 1qyc_A Phenylcoumaran benzylic 25.2 1.9E+02 0.0066 25.6 7.7 98 171-287 6-111 (308)
189 3eme_A Rhodanese-like domain p 25.1 1.1E+02 0.0037 22.9 5.1 46 168-231 55-100 (103)
190 1oc2_A DTDP-glucose 4,6-dehydr 24.8 78 0.0027 28.9 4.9 95 192-289 20-125 (348)
191 3kyj_B CHEY6 protein, putative 24.7 1.8E+02 0.0061 22.3 6.6 82 199-289 10-95 (145)
192 3a10_A Response regulator; pho 24.7 1.9E+02 0.0065 20.9 6.5 78 204-290 3-82 (116)
193 3hvy_A Cystathionine beta-lyas 24.6 2.1E+02 0.0072 27.8 8.3 89 192-287 108-218 (427)
194 3obi_A Formyltetrahydrofolate 24.5 1.2E+02 0.0041 28.1 6.1 70 185-260 98-180 (288)
195 3jx9_A Putative phosphoheptose 24.3 62 0.0021 27.8 3.8 36 168-208 77-112 (170)
196 1qgn_A Protein (cystathionine 24.3 4.5E+02 0.015 25.4 10.7 85 192-286 145-235 (445)
197 4id9_A Short-chain dehydrogena 24.3 1.1E+02 0.0036 28.0 5.8 99 169-290 19-126 (347)
198 2o8r_A Polyphosphate kinase; s 24.3 82 0.0028 33.2 5.4 47 187-234 384-432 (705)
199 3cz5_A Two-component response 24.2 1.7E+02 0.0059 22.7 6.4 81 202-291 5-89 (153)
200 2qvg_A Two component response 23.9 1.4E+02 0.0047 22.8 5.6 82 201-291 6-99 (143)
201 2vyc_A Biodegradative arginine 23.9 1.7E+02 0.006 30.7 8.0 86 204-292 2-96 (755)
202 2vqe_K 30S ribosomal protein S 23.9 73 0.0025 26.2 4.0 46 189-237 65-111 (129)
203 3dzz_A Putative pyridoxal 5'-p 23.9 2.3E+02 0.0079 25.8 8.1 88 192-287 101-199 (391)
204 1mb3_A Cell division response 23.8 1.8E+02 0.006 21.4 6.1 78 204-290 3-84 (124)
205 2zcu_A Uncharacterized oxidore 23.7 1.9E+02 0.0066 25.2 7.3 87 192-290 15-104 (286)
206 3qjg_A Epidermin biosynthesis 23.7 48 0.0016 28.6 2.9 103 178-287 13-116 (175)
207 3h2s_A Putative NADH-flavin re 23.6 1.2E+02 0.0041 25.5 5.6 88 191-289 15-105 (224)
208 1k66_A Phytochrome response re 23.3 1.8E+02 0.0062 22.1 6.3 82 201-291 5-102 (149)
209 2qsj_A DNA-binding response re 23.2 2.1E+02 0.0072 22.1 6.8 81 202-291 3-88 (154)
210 3cfy_A Putative LUXO repressor 23.2 2E+02 0.0069 21.9 6.6 79 203-290 5-85 (137)
211 3h14_A Aminotransferase, class 23.2 3.3E+02 0.011 24.9 9.1 86 192-286 107-199 (391)
212 3i16_A Aluminum resistance pro 23.0 3E+02 0.01 26.6 9.0 90 191-287 106-218 (427)
213 1srr_A SPO0F, sporulation resp 22.9 1.5E+02 0.0051 22.0 5.6 79 203-290 4-84 (124)
214 2xhz_A KDSD, YRBH, arabinose 5 22.9 2.3E+02 0.0079 23.2 7.2 67 217-292 64-134 (183)
215 3lkv_A Uncharacterized conserv 22.4 1.4E+02 0.0047 27.1 6.1 37 246-289 192-228 (302)
216 3mje_A AMPHB; rossmann fold, o 22.3 2.1E+02 0.0071 28.5 7.8 98 192-290 255-375 (496)
217 3ip3_A Oxidoreductase, putativ 22.3 1.7E+02 0.0058 27.0 6.8 52 201-255 23-75 (337)
218 3fxa_A SIS domain protein; str 22.0 75 0.0026 27.0 3.9 60 221-289 64-127 (201)
219 2ayx_A Sensor kinase protein R 21.9 1.6E+02 0.0053 25.9 6.2 82 200-290 127-210 (254)
220 4e7p_A Response regulator; DNA 21.9 1.8E+02 0.0061 22.5 6.1 83 200-291 18-104 (150)
221 2ord_A Acoat, acetylornithine 21.6 4.7E+02 0.016 23.9 10.2 16 271-286 207-222 (397)
222 1w41_A 50S ribosomal protein L 21.6 81 0.0028 24.2 3.7 37 243-287 28-64 (101)
223 3c1o_A Eugenol synthase; pheny 21.5 3.8E+02 0.013 23.8 9.0 98 171-287 6-111 (321)
224 1jeo_A MJ1247, hypothetical pr 21.5 1.1E+02 0.0037 25.3 4.8 91 189-292 30-120 (180)
225 4b4o_A Epimerase family protei 21.5 1E+02 0.0035 27.5 5.0 18 266-283 82-99 (298)
226 3oti_A CALG3; calicheamicin, T 21.2 1.2E+02 0.004 28.4 5.5 54 170-236 21-74 (398)
227 3q9s_A DNA-binding response re 21.1 1.4E+02 0.0048 26.1 5.7 81 202-291 37-118 (249)
228 3ew7_A LMO0794 protein; Q8Y8U8 21.1 1.9E+02 0.0065 24.0 6.4 85 191-288 15-101 (221)
229 3cdk_A Succinyl-COA:3-ketoacid 20.8 1.8E+02 0.0062 26.0 6.4 32 247-278 151-186 (241)
230 1x87_A Urocanase protein; stru 20.8 3.7E+02 0.013 27.2 8.9 87 85-178 213-321 (551)
231 3kax_A Aminotransferase, class 20.8 3.2E+02 0.011 24.6 8.5 87 192-287 98-195 (383)
232 1u2p_A Ptpase, low molecular w 20.7 1.7E+02 0.0058 24.3 5.8 79 170-254 5-89 (163)
233 3sc6_A DTDP-4-dehydrorhamnose 20.6 47 0.0016 29.5 2.4 52 239-290 48-107 (287)
234 3nrb_A Formyltetrahydrofolate 20.5 1.2E+02 0.0042 28.0 5.3 71 185-260 97-179 (287)
235 3ehe_A UDP-glucose 4-epimerase 20.4 1E+02 0.0034 27.7 4.7 53 236-290 54-114 (313)
236 3u5e_c L32, RP73, YL38, 60S ri 20.2 87 0.003 24.3 3.6 36 243-286 34-69 (105)
237 3e48_A Putative nucleoside-dip 20.2 1.3E+02 0.0045 26.5 5.4 64 224-291 41-107 (289)
238 1hdo_A Biliverdin IX beta redu 20.1 1.6E+02 0.0054 24.2 5.6 91 191-291 18-112 (206)
239 2ydy_A Methionine adenosyltran 20.1 1.1E+02 0.0039 27.3 5.0 52 239-290 52-111 (315)
240 3o6p_A Peptide ABC transporter 20.1 1.2E+02 0.004 26.1 4.8 66 189-254 83-156 (229)
241 3eh7_A 4-hydroxybutyrate COA-t 20.1 1.9E+02 0.0066 28.4 6.9 114 156-286 20-157 (434)
242 3ndn_A O-succinylhomoserine su 20.0 4.5E+02 0.015 24.9 9.6 85 192-286 112-201 (414)
No 1
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=100.00 E-value=3.5e-99 Score=750.44 Aligned_cols=364 Identities=48% Similarity=0.751 Sum_probs=335.2
Q ss_pred cCCCCCC--eeeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhhHhcCcHHHHHHHHHHHHHHHhhcc--cCCC
Q 017312 6 VSTDNNS--LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLN--AFSG 81 (373)
Q Consensus 6 ~~~~~~~--~~~i~~~~~~l~ildq~~lP~~~~~~~~~~~~~~~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~--~~~~ 81 (373)
.|++|+. +++|+|+++.|+|||||+||++++|+.|+++++++++||+|+|||||+||++||+++++++++.. .++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~l~ildq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGApaIgiaaa~~l~l~~~~~~~~~~~~ 88 (383)
T 2a0u_A 9 MMSKPHHATLESIKYTPGSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMRVRGAPAIAVSAALGIAVATQRKAANGELK 88 (383)
T ss_dssp -CCCCSSCCCCSEEEETTEEEEECTTTTTTCCCEEEECSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred hhcCCccccccceEEECCEEEEEecCCCCCceEEEEcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhhcccccCC
Confidence 4666654 78999999999999999999999999999999999999999999999999999999999998642 2355
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017312 82 TAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFL 161 (373)
Q Consensus 82 ~~~el~~~l~~~~~~L~~~RPtav~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~g~~~i 161 (373)
+.++|.+.|++++++|.++|||++||+|++++|++.+++.. ...+.+++++.+++.+++|++|+.+++++|+++|+++|
T Consensus 89 ~~~~l~~~l~~~~~~L~~aRPtavnL~na~~r~~~~i~~~~-~~~~~~~~k~~l~~~a~~i~~e~~~~~~~I~~~g~~~I 167 (383)
T 2a0u_A 89 SGREVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLD-PTKAAAEVAQAFVELAEAVYTNDVAFNEGIMRHGAAHI 167 (383)
T ss_dssp CHHHHHHHHHHHHHHHTTSCCSCSHHHHHHHHHHHHHHHSC-TTSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999987532 12467889999999999999999999999999999999
Q ss_pred Hhhh---cCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchH
Q 017312 162 QNQL---KNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA 238 (373)
Q Consensus 162 ~~~~---~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa 238 (373)
.+.. ..+|++||||||||+|||+|||||+++|+.|+++|++|+|||+||||++||.|||||+|.+.|||||+|+|||
T Consensus 168 ~~~~~~~~~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~gk~~~V~v~EtRP~~qGarltA~eL~~~GIpvtlI~Dsa 247 (383)
T 2a0u_A 168 LAAAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGA 247 (383)
T ss_dssp HHHHHHTTCSSEEEEECSCCSTTTSSSSCSHHHHHHHHHHTTCEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGG
T ss_pred hhhccccCCCCCEEEEecCCcchhcCCCchHHHHHHHHHHcCCeEEEEEeCCCCccchHHHHHHHHHHcCCCEEEEehhH
Confidence 8321 1257999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCccccCCCCCCCccccccCCcccceecc-
Q 017312 239 AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSR- 317 (373)
Q Consensus 239 ~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~- 317 (373)
++++|++++||+||||||+|++||+++||+|||++|++||+|||||||+||+||||+.++.|++++||+|+|+|+...+
T Consensus 248 ~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iEer~~~Ev~~~~~ 327 (383)
T 2a0u_A 248 ASSLMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEITTNLV 327 (383)
T ss_dssp HHHHHHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCTTCCSGGGSCCCBCCTHHHHBCTT
T ss_pred HHHHhhcCCCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEeCCcceecCcCCCccccccccCCHHHhccccc
Confidence 9999988889999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred CCCCccccCCC--ceeecceeeecCCCCcc-EEEeCCCCcCCCCCCccccHHHHHhhh
Q 017312 318 GGLGEQVAASG--ISVWNPAFDVTPANLIT-GIITEKGVVTKAGADDAFDIKDFIQKT 372 (373)
Q Consensus 318 ~~~g~~~~~~~--~~v~np~fDvtP~~lIt-~iITE~Gi~~p~~~~~~~~~~~~~~~~ 372 (373)
. |.++++++ ++++||+||+|||+||| +||||+|+++|++...+|++++++.|.
T Consensus 328 ~--g~~~a~~~~~v~v~NPaFDvTP~~lIt~~iITE~Gv~~p~~~~~~~~~~~~~~~~ 383 (383)
T 2a0u_A 328 T--KQRVVADGPHLSIWNPVFDITPSELITGGIITEKGVQAPAASAPYYDIASIIAQA 383 (383)
T ss_dssp T--CCBCSCCCTTEEECCBSEEEECGGGCCSEEECSSCEECCCSSSSCCCHHHHHHCC
T ss_pred C--CceecCCCCceeeecccccccChHHCCcEEEccCCccCCccchhhcCHHHHhhcC
Confidence 2 55667788 99999999999999999 999999999887666679999999874
No 2
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=100.00 E-value=3e-100 Score=755.97 Aligned_cols=348 Identities=41% Similarity=0.599 Sum_probs=329.6
Q ss_pred CCCCCCe-eeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhhHhcCcHHHHHHHHHHHHHHHhhcccCCCCHHH
Q 017312 7 STDNNSL-QSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAAD 85 (373)
Q Consensus 7 ~~~~~~~-~~i~~~~~~l~ildq~~lP~~~~~~~~~~~~~~~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~e 85 (373)
|+.++++ ++|+|++++|.|||||+||++++|+.|++++|++++||+|+|||||+||++||++|++++++. .+.+.++
T Consensus 22 m~~~m~~~~~~~~~~~~l~ilDq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGApaIgiaaa~~l~l~~~~~--~~~~~~~ 99 (374)
T 2yvk_A 22 MTHSFAVPRSVEWKETAITILNQQKLPDETEYLELTTKEDVFDAIVTLKVRGAPAIGITAAFGLALAAKDI--ETDNVTE 99 (374)
T ss_dssp CGGGGGSCCSEEECSSCEEEECGGGTTTCCCEEEECSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHTTC--CCSCHHH
T ss_pred hcccCcccCceEEeCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCccCCcHHHHHHHHHHHHHHHHhc--cCCCHHH
Confidence 4445678 999999999999999999999999999999999999999999999999999999999999875 3457899
Q ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 017312 86 AASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQL 165 (373)
Q Consensus 86 l~~~l~~~~~~L~~~RPtav~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~g~~~i~~~~ 165 (373)
|.+.|++++++|.++|||++||+|++++|++.+++. .+.+++++.+++.+++|++|+.+++++|+++|+++|.
T Consensus 100 l~~~l~~~~~~L~~aRPtavnL~~ai~r~~~~i~~~----~~~~~~k~~l~~~a~~~~~e~~~~~~~I~~~g~~~I~--- 172 (374)
T 2yvk_A 100 FRRRLEDIKQYLNSSRPTAINLSWALERLSHSVENA----ISVNEAKTNLVHEAIQIQVEDEETCRLIGQNALQLFK--- 172 (374)
T ss_dssp HHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTTC----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC---
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 999999999999999999999999999999887542 4788999999999999999999999999999999999
Q ss_pred cCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHc
Q 017312 166 KNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKD 245 (373)
Q Consensus 166 ~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~ 245 (373)
+|++||||||||+|||+|||||+++|+.|+++|++|+|||+||||++||+|||||+|.+.|||||+|+|||++|+|++
T Consensus 173 --~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~gk~~~V~v~EtRP~~qG~rltA~eL~~~GIpvtlI~Dsa~~~~M~~ 250 (374)
T 2yvk_A 173 --KGDRIMTICNAGSIATSRYGTALAPFYLAKQKDLGLHIYACETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTMKE 250 (374)
T ss_dssp --TTCEEEECSCCSTTTSSSSCSTTHHHHHHHHTTCCCEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGGGHHHHHHH
T ss_pred --CCCEEEEecCCCccccCCCcHHHHHHHHHHHcCCEEEEEEeCCCCccccHHHHHHHHHHcCCCEEEEehhHHHHHhhh
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCcccc
Q 017312 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVA 325 (373)
Q Consensus 246 ~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~ 325 (373)
++||+||||||+|++||+++||+|||++|++||+|||||||+||+||||+.++.|+++++|+|+|+|+.... |.++.
T Consensus 251 ~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iEer~~~Ev~~~~---g~~~~ 327 (374)
T 2yvk_A 251 KQISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAPLSTFDTKVKCGADIPIEERDPEEVRQIS---GVRTA 327 (374)
T ss_dssp TTCCEEEECCSEEETTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBCCTHHHHEET---TEECS
T ss_pred cCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecccceeCccCCCccccccccCCHHHhcccC---Cceec
Confidence 889999999999999999999999999999999999999999999999999999999999999999999886 66778
Q ss_pred CCCceeecceeeecCCCCccEEEeCCCCcCCCCCCccccHHHHHhh
Q 017312 326 ASGISVWNPAFDVTPANLITGIITEKGVVTKAGADDAFDIKDFIQK 371 (373)
Q Consensus 326 ~~~~~v~np~fDvtP~~lIt~iITE~Gi~~p~~~~~~~~~~~~~~~ 371 (373)
+++++++||+||+|||+|||+||||+|+++|+. .++|+++|++
T Consensus 328 ~~~v~v~NPaFDvTP~~lIt~iITE~Gv~~P~~---~~~l~~~~~~ 370 (374)
T 2yvk_A 328 PSNVPVFNPAFDITPHDLISGIITEKGIMTGNY---EEEIEQLFKG 370 (374)
T ss_dssp CTTCCBCCBSEEEECGGGCSEEEETTEEECSCH---HHHHHHHTCC
T ss_pred CCCcceeCcceeccCHHHCCEEeccCCccCcch---HHHHHHHhhh
Confidence 899999999999999999999999999999872 3788888764
No 3
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=100.00 E-value=2.2e-98 Score=738.18 Aligned_cols=339 Identities=40% Similarity=0.609 Sum_probs=321.8
Q ss_pred CeeeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhhHhcCcHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHH
Q 017312 12 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLG 91 (373)
Q Consensus 12 ~~~~i~~~~~~l~ildq~~lP~~~~~~~~~~~~~~~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~ 91 (373)
++++|+|+++ |.|||||+||++++|+.|+++++++++||+|+|||||+||++|+++|++++++. .+.+.++|.+.|+
T Consensus 2 ~~~~~~~~~~-l~~ldq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGApai~iaaa~~l~l~~~~~--~~~~~~~l~~~l~ 78 (351)
T 1t5o_A 2 SLRSIFWDDG-LKLIDQTKLPEKLEVIECRNVEELADAIKKLAVRGAPALEAAGAYGIALAARER--EFADVDELKEHLK 78 (351)
T ss_dssp CCCSEEESSS-EEEECGGGTTTCCCEEEECSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHTTSS--CCSCHHHHHHHHH
T ss_pred CccceEeeCC-EEEEecCCCCCeEEEEEeCCHHHHHHHHHhCCcCCcHHHHHHHHHHHHHHHHhc--cCCCHHHHHHHHH
Confidence 4788999988 999999999999999999999999999999999999999999999999999875 3457899999999
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcE
Q 017312 92 NKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFS 171 (373)
Q Consensus 92 ~~~~~L~~~RPtav~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~g~~~i~~~~~~~~~~ 171 (373)
+++++|.++|||++||+|++++|++.+++ ..+.+++++.+++.+++|++|+.+++++|+++|+++|. +|++
T Consensus 79 ~~~~~L~~aRPtav~l~~a~~~~~~~i~~----~~~~~~~k~~l~~~~~~~~~e~~~~~~~I~~~g~~~I~-----~g~~ 149 (351)
T 1t5o_A 79 KAADFLASTRPTAVNLFVGIERALNAALK----GESVEEVKELALREAEKLAEEDVERNRKMGEYGAELLE-----DGDV 149 (351)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHHTT----CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----TTCE
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCE
Confidence 99999999999999999999999998864 24788999999999999999999999999999999999 8999
Q ss_pred EEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEE
Q 017312 172 VLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAV 251 (373)
Q Consensus 172 ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~V 251 (373)
||||||||+|||+|||||+++|+.|+++|++|+|||+||||++||.|||||+|.+.|||||+|+|||++|+|++++||+|
T Consensus 150 ILThcnsg~lat~g~gtal~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~V 229 (351)
T 1t5o_A 150 VLTYCNAGRLATVDWGTALGVVRSAVEQGKEIRVIACETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGMVDKV 229 (351)
T ss_dssp EEECSCCSSSSSSSSCSHHHHHHHHHHTTCCCEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHHHHHHTTCCSEE
T ss_pred EEEecCCccccccCCChHHHHHHHHHHCCCEEEEEEeCCCcccccHHHHHHHHHhCCCCEEEEehhHHHHHhhcCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred EEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCcee
Q 017312 252 IVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISV 331 (373)
Q Consensus 252 ivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v 331 (373)
|||||+|++|| ++||+|||++|++||+|||||||+||+||||+. +.|+++++|+|+|+|+.... |.++.++++++
T Consensus 230 ivGAd~V~aNG-v~NKiGT~~lAl~Ak~~~vPfyV~a~~~k~d~~-~~g~~i~iEer~~~ev~~~~---g~~~~~~~v~v 304 (351)
T 1t5o_A 230 IVGADRIVRDA-VFNKIGTYTVSVVAKHHNIPFYVAAPKATFDWE-RTAKDVVIEERPREELIFCG---KRQIAPLNVKV 304 (351)
T ss_dssp EECCSEEETTE-EEEETTHHHHHHHHHHTTCCEEEECCGGGBCTT-CCGGGCCCCBCCTHHHHEET---TEECSCTTCEE
T ss_pred EECccchhhcC-cccccCHHHHHHHHHHcCCCEEEeCccceeccc-cCCCccccccCCHHHhcccC---CeeecCCCcce
Confidence 99999999999 999999999999999999999999999999999 99999999999999999886 66678899999
Q ss_pred ecceeeecCCCCccEEEeCCCCcCCCCCCccccHHHHHh
Q 017312 332 WNPAFDVTPANLITGIITEKGVVTKAGADDAFDIKDFIQ 370 (373)
Q Consensus 332 ~np~fDvtP~~lIt~iITE~Gi~~p~~~~~~~~~~~~~~ 370 (373)
+||+||+|||+|||+||||+|+++|+ + .++|.++|+
T Consensus 305 ~NPaFDvTP~~lIt~iITE~Gv~~p~-~--~~~l~~~~~ 340 (351)
T 1t5o_A 305 YNPAFDPTPLENVTALITEYGVIYPP-Y--EVNVPKVLK 340 (351)
T ss_dssp CCBSEEEEEGGGCSEEEETTEEECSC-H--HHHHHHHTT
T ss_pred eCccccCCCHHHCCEEEeCCCccCcc-h--HHHHHHHHc
Confidence 99999999999999999999999987 2 268887764
No 4
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=100.00 E-value=7.7e-98 Score=733.32 Aligned_cols=338 Identities=47% Similarity=0.701 Sum_probs=317.4
Q ss_pred eeeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhhHhcCcHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHH
Q 017312 13 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGN 92 (373)
Q Consensus 13 ~~~i~~~~~~l~ildq~~lP~~~~~~~~~~~~~~~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~ 92 (373)
+++|+|++++|.|||||+||++++|+.|+++++++++|++|+|||||+||++||++|++++++.. ..+.. +.|++
T Consensus 7 ~~~~~~~~~~~~~ldq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGAp~ig~aaa~~l~l~~~~~~--~~~~~---~~l~~ 81 (347)
T 1t9k_A 7 TKTMEWSGNSLKLLDQRKLPFIEEYVECKTHEEVAHAIKEMIVRGAPAIGVAAAFGYVLGLRDYK--TGSLT---DWMKQ 81 (347)
T ss_dssp CSSEEECSSCEEEECTTTTTTCCCEEEECSHHHHHHHHHHTSSCSHHHHHHHHHHHHHHHHHTCC--SSCHH---HHHHH
T ss_pred ccceEEECCEEEEEeCCCCCCceEEEEeCCHHHHHHHHHhCCcCCcHHHHHHHHHHHHHHHHhcc--cCCHH---HHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999998752 23444 45999
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEE
Q 017312 93 KLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSV 172 (373)
Q Consensus 93 ~~~~L~~~RPtav~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~g~~~i~~~~~~~~~~I 172 (373)
++++|.++|||++||+|++++|++.+++.. +.+++++.+++.+++|++|+.+++++|+++|+++|. +|++|
T Consensus 82 ~~~~L~~aRPtav~l~~a~~~~~~~i~~~~----~~~~~k~~l~~~~~~~~~e~~~~~~~I~~~g~~~I~-----~g~~I 152 (347)
T 1t9k_A 82 VKETLARTRPTAVNLFWALNRMEKVFFENA----DRENLFEILENEALKMAYEDIEVNKAIGKNGAQLIK-----DGSTI 152 (347)
T ss_dssp HHHHHHTSCSSCTHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-----TTEEE
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEE
Confidence 999999999999999999999999887542 556789999999999999999999999999999999 89999
Q ss_pred EEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEE
Q 017312 173 LTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVI 252 (373)
Q Consensus 173 LT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~Vi 252 (373)
|||||||+|||+|||||+++|+.|+++|++|+|||+||||++||.|+|||+|.+.|||||+|+|||++++|++++||+||
T Consensus 153 LThcns~~lat~~~gtvl~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~Vi 232 (347)
T 1t9k_A 153 LTHCNAGALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQGARLTAWELMKDGIEVYVITDNMAGWLMKRGLIDAVV 232 (347)
T ss_dssp EECSCCSGGGSSSSCSHHHHHHHHHHTTCCEEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGGGHHHHHHTTCCSEEE
T ss_pred EEecCCCccccCCccHHHHHHHHHHHCCCeEEEEEeCCCCccccHHHHHHHHHhCCCCEEEEehhHHHHHhhcCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred EcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceee
Q 017312 253 VGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVW 332 (373)
Q Consensus 253 vGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~ 332 (373)
||||+|++||+++||+|||++|++||+|||||||+||+||||+.++.|+++++|+|+|+|+.... |.++.+++++++
T Consensus 233 vGAd~V~aNG~v~NKiGT~~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iE~r~~~ev~~~~---g~~~~~~~v~v~ 309 (347)
T 1t9k_A 233 VGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEERRPEEVTHCG---GNRIAPEGVKVL 309 (347)
T ss_dssp ECCSEEETTSCEEEETTHHHHHHHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBCCTHHHHEET---TEECSCTTCEEC
T ss_pred ECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecccceeccccCCccccccccCChHhccccC---CeeccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999886 666788999999
Q ss_pred cceeeecCCCCccEEEeCCCCcCCCCCCccccHHHHHh
Q 017312 333 NPAFDVTPANLITGIITEKGVVTKAGADDAFDIKDFIQ 370 (373)
Q Consensus 333 np~fDvtP~~lIt~iITE~Gi~~p~~~~~~~~~~~~~~ 370 (373)
||+||+|||+|||+||||+|+++|+ + .++|.++|+
T Consensus 310 NPaFDvTP~~lIt~iITE~Gv~~p~-~--~~~l~~~~~ 344 (347)
T 1t9k_A 310 NPAFDVTENTLITAIITEKGVIRPP-F--EENIKKILE 344 (347)
T ss_dssp CBSEEEECGGGCSEEEETTEEECSS-H--HHHHHHHHC
T ss_pred CcccccCCHHHCCEEeccCCccCcc-h--HHHHHHHhc
Confidence 9999999999999999999999987 2 277887764
No 5
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=100.00 E-value=1.7e-84 Score=637.70 Aligned_cols=312 Identities=29% Similarity=0.390 Sum_probs=287.0
Q ss_pred eEEEEEecChHHHHHHHHhhHhcCcHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 017312 34 ETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAK 113 (373)
Q Consensus 34 ~~~~~~~~~~~~~~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPtav~l~nai~~ 113 (373)
-++|+.|+++++++++|++|+|||||+||++|+++|++++++. .+.+.++|.+.|++++++|.++|||++||+|++++
T Consensus 14 ~~~~~~~~~~~~~~~aI~~m~VrGApai~iaaa~~l~~~~~~~--~~~~~~~l~~~l~~~~~~L~~aRPtav~L~~a~~~ 91 (338)
T 3a11_A 14 GRHMAVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKS--KATNVDEFWKEMKQAAKILFETRPTAVSLPNALRY 91 (338)
T ss_dssp -----CCSHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHC--CCCSHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHhCcEeCcHHHHHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 3789999999999999999999999999999999999999986 34678999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHH
Q 017312 114 LKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVI 193 (373)
Q Consensus 114 ~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l 193 (373)
|++.+++......+.+++++.+++.+++|++|+.+++++|+++|+++|. +|++||||||| +||+++|
T Consensus 92 ~~~~i~~~~~~~~~~~~~k~~l~~~a~~~~~e~~~~~~~I~~~g~~~I~-----~g~~ILTh~~S--------~tvl~~l 158 (338)
T 3a11_A 92 VMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIE-----DGDVIMTHCHS--------KAAISVM 158 (338)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----TTCEEEECSCC--------HHHHHHH
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEeCCc--------HHHHHHH
Confidence 9999876322345788999999999999999999999999999999999 89999999998 7999999
Q ss_pred HHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHH
Q 017312 194 RALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSL 273 (373)
Q Consensus 194 ~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~l 273 (373)
+.|+++|++|+|||+||||++|| |+|||+|.+.|||||+|+|||++++| ++||+||||||+|++||+++||+|||++
T Consensus 159 ~~A~~~gk~~~V~v~EtRP~~qG-rltA~eL~~~GI~vtlI~Dsa~~~~M--~~Vd~VivGAd~V~anG~v~NKiGT~~l 235 (338)
T 3a11_A 159 KTAWEQGKDIKVIVTETRPKWQG-KITAKELASYGIPVIYVVDSAARHYM--KMTDKVVMGADSITVNGAVINKIGTALI 235 (338)
T ss_dssp HHHHHTTCCCEEEEECCTTTTHH-HHHHHHHHHTTCCEEEECGGGTTTTG--GGCSEEEECCSEECTTSCEEEETTHHHH
T ss_pred HHHHHCCCeEEEEEeCCCCchhh-HHHHHHHHhCCCCEEEEehHHHHHHH--HhCCEEEECccEEecCCCEeecccHHHH
Confidence 99999999999999999999999 89999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCcccc-CCCceeecceeeecCCCCccEEEeCCC
Q 017312 274 ALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVA-ASGISVWNPAFDVTPANLITGIITEKG 352 (373)
Q Consensus 274 A~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~-~~~~~v~np~fDvtP~~lIt~iITE~G 352 (373)
|++||+|||||||+||+||||+.++.|.++++|+|+|+|+... |.+.+ +++++++||+||+|||+|||+||||+|
T Consensus 236 Al~Ak~~~vPfyV~a~~~k~d~~~~~g~~i~iE~r~~~ev~~~----g~~~~w~~~v~v~NPaFDvTP~~lIt~iITE~G 311 (338)
T 3a11_A 236 ALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPE----DELKTWPKNIEVWNPAFDVTPPEYVDVIITERG 311 (338)
T ss_dssp HHHHHHTTCEEEEECCGGGBCSCCSSSSCCCCCBCCGGGTSCH----HHHTTSCTTEEECCBSEEEECGGGCSEEEETTE
T ss_pred HHHHHHcCCCEEEecccceecccCCCCcccccccCCHHHcccc----cccccCCCCceecCcceeccCHHHcCEEecCCC
Confidence 9999999999999999999999999999999999999999876 33445 789999999999999999999999999
Q ss_pred CcCCCCCCccccHHHHH
Q 017312 353 VVTKAGADDAFDIKDFI 369 (373)
Q Consensus 353 i~~p~~~~~~~~~~~~~ 369 (373)
+++|+ +. +..|++++
T Consensus 312 v~~p~-~v-~~~L~e~y 326 (338)
T 3a11_A 312 IIPPY-AA-IDILREEF 326 (338)
T ss_dssp EECGG-GH-HHHHHHHH
T ss_pred ccCch-hH-HHHHHHHh
Confidence 99987 34 35666554
No 6
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=100.00 E-value=1.9e-72 Score=539.20 Aligned_cols=269 Identities=25% Similarity=0.299 Sum_probs=254.7
Q ss_pred cChHHHHHHHHhhHhcCcHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH
Q 017312 41 RDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISK 120 (373)
Q Consensus 41 ~~~~~~~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPtav~l~nai~~~~~~i~~ 120 (373)
.++++++++|++|+|||||+||++|+++|+++++++ +..+|++.|++++++|.++|||++||+|+++++
T Consensus 4 ~~~~~~~~~i~~~~vrGa~~i~~aa~~~l~~~~~~~-----~~~~~~~~l~~~~~~L~~~RPtav~l~~a~~~~------ 72 (276)
T 1vb5_A 4 ERVLEILREMKRERIKGASWLAKKGAEAFLTLAEEL-----DESLLEDAIMELREEVVKVNPSMASLYNLARFI------ 72 (276)
T ss_dssp HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHS-----CTTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHS------
T ss_pred ccHHHHHHHHHhCcEeCcHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHc------
Confidence 578999999999999999999999999999999874 456799999999999999999999999999988
Q ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCC
Q 017312 121 AAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEG 200 (373)
Q Consensus 121 ~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g 200 (373)
+.+++++.+++.+++|++++..++++|+++|+++|. +|++||||||| +|++++|+.|+++|
T Consensus 73 ------~~~~~k~~l~~~~~~~~~~~~~~~~~Ia~~a~~~I~-----~g~~IlT~~~s--------~Tv~~~l~~a~~~~ 133 (276)
T 1vb5_A 73 ------PVTNRRDILKSRALEFLRRMEEAKRELASIGAQLID-----DGDVIITHSFS--------STVLEIIRTAKERK 133 (276)
T ss_dssp ------CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----TTEEEECCSCC--------HHHHHHHHHHHHTT
T ss_pred ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CCCEEEEeCCC--------hHHHHHHHHHHHcC
Confidence 123567889999999999999999999999999999 89999999998 69999999999999
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhC
Q 017312 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFH 280 (373)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~ 280 (373)
++|+||++||||++|| +++||+|.+.||||++|+|++++++| ++||+||+|||+|++||+++||+|||++|++||+|
T Consensus 134 ~~~~V~v~etrP~~qG-~~~a~~L~~~gI~vtli~dsa~~~~m--~~vd~vivGAd~i~~nG~v~nkiGt~~iA~~A~~~ 210 (276)
T 1vb5_A 134 KRFKVILTESSPDYEG-LHLARELEFSGIEFEVITDAQMGLFC--REASIAIVGADMITKDGYVVNKAGTYLLALACHEN 210 (276)
T ss_dssp CCEEEEEECCTTTTHH-HHHHHHHHHTTCCEEEECGGGHHHHH--TTCSEEEECCSEECTTSCEEEETTHHHHHHHHHHT
T ss_pred CeEEEEEeCCCcchhh-HHHHHHHHHCCCCEEEEcHHHHHHHH--ccCCEEEEcccEEecCCCEeechhHHHHHHHHHHc
Confidence 9999999999999999 78999999999999999999999999 89999999999999999999999999999999999
Q ss_pred CCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcCCC
Q 017312 281 NILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKA 357 (373)
Q Consensus 281 ~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~p~ 357 (373)
++||||+||++||++. +.|+++++|+|+|+| ++++++||+||+||++|||+||||.|+++|+
T Consensus 211 ~vp~~V~a~~~K~~~~-~~~~~i~iE~r~~~e--------------~~v~v~np~fD~tP~~lI~~iITe~Gv~~p~ 272 (276)
T 1vb5_A 211 AIPFYVAAETYKFHPT-LKSGDVMLMERDLIR--------------GNVRIRNVLFDVTPWKYVRGIITELGIVIPP 272 (276)
T ss_dssp TCCEEEECCGGGBCSS-CCGGGCCCCBCCCEE--------------TTEECCCBCEEEECGGGCSEEEETTEEECTT
T ss_pred CCCEEEeccccccCcc-cCccccccccCCccc--------------cCccccCCCeEecCHHHCCEEEeCCCccCcc
Confidence 9999999999999999 889999999999977 3578999999999999999999999999997
No 7
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=100.00 E-value=1.6e-68 Score=518.25 Aligned_cols=282 Identities=26% Similarity=0.303 Sum_probs=236.6
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 017312 59 PAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEA 138 (373)
Q Consensus 59 ~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPtav~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~ 138 (373)
-.++++|+.+|...+... ++++..||.+.|+++.+.|.++|| ++||.|+++++++.+........+.+++|+.+++.
T Consensus 20 ~s~aiAAi~aL~~~l~~s--~~~T~~el~~~l~~a~~~L~~~r~-avsl~~a~~~~~~~i~~~~~~~~~~~~~k~~l~~~ 96 (315)
T 3ecs_A 20 MASAVAAIRTLLEFLKRD--KGETIQGLRANLTSAIETLCGVDS-SVAVSSGGELFLRFISLASLEYSDYSKCKKIMIER 96 (315)
T ss_dssp SCHHHHHHHHHHHHHTCC--C----CHHHHHHHHHHHTTTTTSC-CHHHHHHHHHHHHHCC-----------CTTHHHHH
T ss_pred hHHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHH
Confidence 356778899999888875 567889999999999999999998 78999999999998753322234778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchH
Q 017312 139 AEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSR 218 (373)
Q Consensus 139 ~~~~~~e~~~a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~r 218 (373)
++.|+++...++++|+++|+++|. +|++||||||| +||+++|+.|+++|++|+|||+||||++||.+
T Consensus 97 ~~~~~~~~~~a~~~I~~~~~~~I~-----~g~~ILTh~~S--------~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~ 163 (315)
T 3ecs_A 97 GELFLRRISLSRNKIADLCHTFIK-----DGATILTHAYS--------RVVLRVLEAAVAAKKRFSVYVTESQPDLSGKK 163 (315)
T ss_dssp HHHHHHHHTTHHHHHHHHHGGGCC-----TTEEEEECSCC--------HHHHHHHHHHHTTTCCEEEEEECCTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-----CCCEEEEcCCc--------HHHHHHHHHHHHcCCeEEEEEecCCCcchHHH
Confidence 999999888999999999999999 89999999998 69999999999999999999999999999998
Q ss_pred HHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCccccCCCC
Q 017312 219 LTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLS 298 (373)
Q Consensus 219 lta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~~~~~~ 298 (373)
| +|+|.+.|||||+|+|+|++++| ++||+||+|||+|++||+++||+|||++|++||+|||||||+||+|||++.++
T Consensus 164 l-a~~L~~~gI~vtli~Dsa~~~~m--~~vd~VivGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V~a~~~K~~~~~~ 240 (315)
T 3ecs_A 164 M-AKALCHLNVPVTVVLDAAVGYIM--EKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP 240 (315)
T ss_dssp H-HHHHHTTTCCEEEECGGGHHHHG--GGCSEEEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCSCCC
T ss_pred H-HHHHHHcCCCEEEEehhHHHHHH--HhCCEEEECceEEecCCCeeehhhhHHHHHHHHHhCCCEEEEeccccccccCC
Confidence 7 99999999999999999999999 79999999999999999999999999999999999999999999999999887
Q ss_pred -CCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcCCCCCCccccHHH
Q 017312 299 -SGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGADDAFDIKD 367 (373)
Q Consensus 299 -~~~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~p~~~~~~~~~~~ 367 (373)
.+.++++|+|++.|+...+ ..+++++++||+||+|||+|||+||||+|+++|+. .+ .+|.+
T Consensus 241 ~~~~~i~~e~~~~~ev~~~~------~~~~~v~v~NP~fDvTP~~lIt~iITe~Gv~~p~~-vs-~eLik 302 (315)
T 3ecs_A 241 LNQQDVPDKFKYKADTLKVA------QTGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSA-VS-DELIK 302 (315)
T ss_dssp SSGGGSCGGGTC-------------------CCBCCCSEEEECGGGCSEEEETTEEECGGG-HH-HHHHH
T ss_pred CCcccCCccccChhhccccc------cCCCcCcCCCCCccCCCHHHcCEEEcCCCCCCcch-hh-HHHHH
Confidence 4467899999999987654 24678999999999999999999999999999983 52 33433
No 8
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=100.00 E-value=1.9e-55 Score=399.52 Aligned_cols=168 Identities=49% Similarity=0.774 Sum_probs=153.8
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCC--CCEEEEcceeEecCCCeecccchHHHHHHH
Q 017312 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGR--VSAVIVGADRVAANGDTANKIGTYSLALCA 277 (373)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~--vd~VivGAd~I~~nG~v~nkiGT~~lA~~A 277 (373)
|++|+|||+||||++||+|||||+|.+.|||||+|+|||++++|++++ ||+||+|||+|++||+++||+|||++|++|
T Consensus 2 ~k~~~V~v~EsRP~~qG~rlta~eL~~~gI~vtlI~Dsa~~~~m~~~~~~Vd~VivGAd~v~~nG~v~nkiGT~~~Al~A 81 (191)
T 1w2w_B 2 PRMGHVFPLETRPYNQGSRLTAYELVYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVIC 81 (191)
T ss_dssp CEEEEEEEBCCTTTTHHHHTHHHHHHHHTCCBEEBCGGGHHHHHHHCSSCEEEEEECCSEECTTSCEEEETTHHHHHHHH
T ss_pred CcEEEEEEcCCCCccccHHHHHHHHHHcCCCEEEEechHHHHHHHhCCCCCCEEEECccEEecCCCEEecccHHHHHHHH
Confidence 689999999999999999999999999999999999999999998877 999999999999999999999999999999
Q ss_pred HhCCCeEEEeccCccccCCCCCCCccccccCCcccceeccCC-----CC--------------ccccCCCceeecceeee
Q 017312 278 KFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGG-----LG--------------EQVAASGISVWNPAFDV 338 (373)
Q Consensus 278 k~~~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~-----~g--------------~~~~~~~~~v~np~fDv 338 (373)
|+|||||||+||+|||++.++.|+++++|+|+|+|+...++. .| .+.++++++++||+||+
T Consensus 82 k~~~vPf~V~a~~~k~~~~~~~g~~i~iE~r~~~ev~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~v~Np~fDv 161 (191)
T 1w2w_B 82 KQFGIKFFVVAPKTTIDNVTETGDDIIVEERNPEEFKVVTGTVINPENGSLILNESGEPITGKVGIAPLEINVWNPAFDI 161 (191)
T ss_dssp HHHTCEEEEECCGGGBCSSCCSGGGCCCCBCCTHHHHEEEEEEBCTTTCCBCBCTTSCBCEEEEECSCTTCEECCBSEEE
T ss_pred HHcCCCEEEecccceeeeccCCcceeecccCCHHHhccccCccccccccccccccccccccccccccCCCcccccccccc
Confidence 999999999999999999999999999999999999887521 01 04567899999999999
Q ss_pred cCCCCccEEEeCCCCcCCCCCCccccHHHH
Q 017312 339 TPANLITGIITEKGVVTKAGADDAFDIKDF 368 (373)
Q Consensus 339 tP~~lIt~iITE~Gi~~p~~~~~~~~~~~~ 368 (373)
|||+|||+||||+|+++|++ .+.|+|.++
T Consensus 162 TP~~lIt~iITE~Gv~~ps~-~~~~~l~~~ 190 (191)
T 1w2w_B 162 TPHELIDGIITEEGVFTKNS-SGEFQLESL 190 (191)
T ss_dssp ECGGGCSEEEETTEEECCCT-TSCCCCGGG
T ss_pred CCHHHcCEEEecCcccCCCC-cchhhHHhh
Confidence 99999999999999999975 333477665
No 9
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=100.00 E-value=9.9e-47 Score=345.40 Aligned_cols=187 Identities=41% Similarity=0.664 Sum_probs=165.4
Q ss_pred CeeeEEE---e-C-CeEEEEecCCCCCeEEEEEecChHHHHHHHHhhHhcCcHHHHHHHHHHHHHHHhhcccCCCCHH--
Q 017312 12 SLQSICY---R-R-GSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAA-- 84 (373)
Q Consensus 12 ~~~~i~~---~-~-~~l~ildq~~lP~~~~~~~~~~~~~~~~aI~~m~vrGA~ai~~~aa~~l~~~~~~~~~~~~~~~-- 84 (373)
+++.|+| + + ++|.|||||+||++++|+.|++++|++++|++|+|||||+||++|||||++++++... ..+.+
T Consensus 2 ~l~~~~~~~~~~~~~~l~iLDQ~~LP~e~~~~~~~~~~~v~~AIk~M~VRGAPaIgiaAA~glal~a~~~~~-~~~~~~~ 80 (211)
T 1w2w_A 2 SLEAIVFDRSEPENVSVKVLDQLLLPYTTKYVPIHTIDDGYSVIKSMQVRGAPAIAIVGSLSVLTEVQLIKH-NPTSDVA 80 (211)
T ss_dssp TTCSEEEECSSTTSCEEEEECTTTTTTCCCEEECCSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHH-CTTSTGG
T ss_pred CcCCeeeeeecCCCCEEEEEecCCCCCcEEEEEeCCHHHHHHHHHCCcccCchHHHHHHHHHHHHHHHhccc-cCChhhc
Confidence 5677777 3 3 4899999999999999999999999999999999999999999999999999986410 12233
Q ss_pred ---------HHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017312 85 ---------DAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGS 155 (373)
Q Consensus 85 ---------el~~~l~~~~~~L~~~RPtav~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~ 155 (373)
++...|++..++|.++|||+|||+|++++|++.+... .+.+++++.+++.++.|++|++.+|++|++
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~L~~sRPTAVNL~~Al~r~~~~~~~~----~~~~~~~~~l~~~a~~i~~ed~~~n~~IG~ 156 (211)
T 1w2w_A 81 TLYSLVNWESTKTVLNKRLDFLLSSRPTAVNLSNSLVEIKNILKSS----SDLKAFDGSLYNYVCELIDEDLANNMKMGD 156 (211)
T ss_dssp GGSCTTCHHHHHHHHHHHHHHHHTSCCSCSHHHHHHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999887532 467889999999999999999999999999
Q ss_pred HHHHHhHhhhc-C---CCcEEEEecCCCcccccccccHHHHHHHHHHCCCee
Q 017312 156 YGASFLQNQLK-N---SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLE 203 (373)
Q Consensus 156 ~g~~~i~~~~~-~---~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~ 203 (373)
||+++|.+... + +|++||||||||+|||+||||++++|+.||++|+.|
T Consensus 157 ~Ga~lI~~~~~~~~~~dg~~ILTHCNtG~LAT~g~GTALgvIr~a~~~Gk~~ 208 (211)
T 1w2w_A 157 NGAKYLIDVLQKDGFKDEFAVLTICNTGSLATSGYGTALGVIRSLWKDSLAK 208 (211)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEECSCCSGGGSSSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCCCeEEeECCCchHhhcCcchHHHHHHHHHHcCCcc
Confidence 99999944321 2 579999999999999999999999999999998765
No 10
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=98.27 E-value=2.2e-06 Score=79.23 Aligned_cols=128 Identities=19% Similarity=0.127 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC----CCe-eEEEEecCCCCCcchHHHHH
Q 017312 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE----GVL-ERAYCSETRPFNQGSRLTAF 222 (373)
Q Consensus 148 ~a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~----g~~-~~V~v~EsrP~~qG~rlta~ 222 (373)
+..++|++.++++|. +|++|...+ | +|+..+++...+. +.+ ++| |+-| . -++.
T Consensus 7 ~~K~~IA~~Aa~~I~-----dg~~I~Lgs--G-------ST~~~~~~~L~~~~~~~~l~~itv-VTnS------~-~~a~ 64 (227)
T 1uj6_A 7 SYKKEAAHAAIAYVQ-----DGMVVGLGT--G-------STARYAVLELARRLREGELKGVVG-VPTS------R-ATEE 64 (227)
T ss_dssp HHHHHHHHHHHTTCC-----TTCEEEECC--S-------HHHHHHHHHHHHHHHTTSSCSCEE-EESS------H-HHHH
T ss_pred HHHHHHHHHHHHHCC-----CCCEEEEcC--C-------HHHHHHHHHHhhhhhhcCCCCEEE-ECCc------H-HHHH
Confidence 345678999999999 899999864 3 5777777766433 224 776 4443 2 2466
Q ss_pred HHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHH--HHHHHhCCCeEEEeccCccccCCCCCC
Q 017312 223 ELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSL--ALCAKFHNILFYVAAPLTSIDLTLSSG 300 (373)
Q Consensus 223 ~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~l--A~~Ak~~~vPvyV~a~~~k~~~~~~~~ 300 (373)
+|.+.||++..+ ++.++|+.|+|||.|-.++-.....|...+ +++++. ...||++++++||..... +
T Consensus 65 ~l~~~gi~v~~l---------~~~~~D~af~Gadgvd~~~~~~~~~g~a~~kekiva~~-a~~~ivlaD~sK~~~~lg-~ 133 (227)
T 1uj6_A 65 LAKREGIPLVDL---------PPEGVDLAIDGADEIAPGLALIKGMGGALLREKIVERV-AKEFIVIADHTKKVPVLG-R 133 (227)
T ss_dssp HHHHTTCCBCCC---------CTTCEEEEEECCSEEEGGGEEECCTTSCHHHHHHHHHT-EEEEEEEEEGGGBCSSSC-S
T ss_pred HHHhCCCeEEEc---------CCCcCCEEEECCCccCccccEECCHHHHHHHHHHHHhc-cCCEEEEEEcchhccccC-C
Confidence 788899999887 336899999999999998855556666666 355553 459999999999987643 3
Q ss_pred CccccccC
Q 017312 301 QEIVIEER 308 (373)
Q Consensus 301 ~~i~ie~r 308 (373)
..+|+|-.
T Consensus 134 ~~lPvEV~ 141 (227)
T 1uj6_A 134 GPVPVEIV 141 (227)
T ss_dssp SCEEEEEC
T ss_pred CceeEEEC
Confidence 45666654
No 11
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=97.65 E-value=0.00027 Score=65.85 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHH-HhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC----CC-eeEEEEecCCCCCcchHHHH
Q 017312 148 ATNKAIGSYGAS-FLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE----GV-LERAYCSETRPFNQGSRLTA 221 (373)
Q Consensus 148 ~a~~~I~~~g~~-~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~----g~-~~~V~v~EsrP~~qG~rlta 221 (373)
..-++|++.+++ +|. +|++|..-+ | +|+..+++...+. +. +++| |+=| --++
T Consensus 11 ~~K~~iA~~Aa~~~I~-----dg~~IgLgs--G-------ST~~~~~~~L~~~~~~~~l~~itv-VTnS-------~~~a 68 (244)
T 2f8m_A 11 SLKKIVAYKAVDEYVQ-----SNMTIGLGT--G-------STVFYVLERIDNLLKSGKLKDVVC-IPTS-------IDTE 68 (244)
T ss_dssp HHHHHHHHHHHHHHCC-----TTCEEEECC--S-------TTTHHHHHHHHHHHHHTSSCSCEE-EESS-------HHHH
T ss_pred HHHHHHHHHHHHHhCC-----CCCEEEEcC--h-------HHHHHHHHHHhhhhhccCCCCEEE-ECCc-------HHHH
Confidence 456678999999 998 899987643 3 4677677665432 22 5666 3333 1245
Q ss_pred HHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHH-HHHhCCCeEEEeccCcccc-CCCCC
Q 017312 222 FELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLAL-CAKFHNILFYVAAPLTSID-LTLSS 299 (373)
Q Consensus 222 ~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~-~Ak~~~vPvyV~a~~~k~~-~~~~~ 299 (373)
.+|.+.||++..+- .+ +.+|+.|.|||.|-.+++++---|-..+-- +.-....-||+++..+||. ...-.
T Consensus 69 ~~l~~~gi~v~~l~------~~--~~iD~afdGaDeId~~~glikg~g~Al~kekiva~~A~~~ivlaD~SK~~~~~Lg~ 140 (244)
T 2f8m_A 69 LKARKLGIPLTTLE------KH--SNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIGDESKLCTNGLGM 140 (244)
T ss_dssp HHHHHHTCCBCCCC------SS--CCBSEEEECCSEECTTCCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSCTTC
T ss_pred HHHHHCCCeEEEec------cc--CcCCEEEECCcccCCCCCcccCHHHHHHHHHHHHHhhCcEEEEEECCccccccCCC
Confidence 66777799988772 23 589999999999999877766666666554 3556778899999999999 65432
Q ss_pred CCcccccc
Q 017312 300 GQEIVIEE 307 (373)
Q Consensus 300 ~~~i~ie~ 307 (373)
...+|+|-
T Consensus 141 ~~plPvEV 148 (244)
T 2f8m_A 141 TGAVPIEI 148 (244)
T ss_dssp SSCEEEEE
T ss_pred CCcEEEEE
Confidence 34566654
No 12
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=97.63 E-value=0.0002 Score=65.81 Aligned_cols=129 Identities=15% Similarity=0.028 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCC
Q 017312 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDR 228 (373)
Q Consensus 149 a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~G 228 (373)
..++|++.++++++ +|++|.--+ | ||+..+++...+..+++++.|+=|- -++..|.+.|
T Consensus 12 ~K~~iA~~A~~~V~-----~g~~Iglgs--G-------ST~~~~i~~L~~~~~~itv~VtnS~-------~~a~~l~~~g 70 (224)
T 3kwm_A 12 LKKLAATEAAKSIT-----TEITLGVGT--G-------STVGFLIEELVNYRDKIKTVVSSSE-------DSTRKLKALG 70 (224)
T ss_dssp HHHHHHHHHHTTCC-----SSEEEEECC--S-------HHHHHHHHHGGGCTTTEEEEEESCH-------HHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC-----CCCEEEECC--c-------HHHHHHHHHHHhhcCceEEEECCcH-------HHHHHHHHcC
Confidence 45678888999998 898887743 3 4788888877665557777565442 2466788899
Q ss_pred CCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHH-HHHHHhCCCeEEEeccCccccCCCCCCCcccccc
Q 017312 229 IPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSL-ALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEE 307 (373)
Q Consensus 229 I~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~l-A~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ie~ 307 (373)
||+..+-+ . .++|+.|.|||.|-.++.++---|...+ --+......-||+++..+||....- ...+|+|-
T Consensus 71 i~l~~l~~------~--~~iD~afdGADevd~~~~liKGgg~al~rEKiva~~A~~~iviaD~sK~~~~Lg-~~plPvEV 141 (224)
T 3kwm_A 71 FDVVDLNY------A--GEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKKVNTLG-NFPLPIEV 141 (224)
T ss_dssp CCBCCHHH------H--CSEEEEEECCSEECTTSCEECCSSSCHHHHHHHHHTEEEEEEEEEGGGBCSSBC-SSCEEEEE
T ss_pred CeEEecCc------c--ccccEEEECCCccccccCeecCchhhHHHHHHHHHhcCcEEEEEeCchhhhhcC-CCCeEEEE
Confidence 99775422 2 6999999999999998877653333332 1233345668999999999987643 23466553
No 13
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=97.63 E-value=0.00011 Score=67.54 Aligned_cols=130 Identities=13% Similarity=0.015 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCC
Q 017312 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDR 228 (373)
Q Consensus 149 a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~G 228 (373)
..++|++.++++|. +|++|.--+ | +|+..+++...+.+.+++|.|+=|- + ++.+|.+.|
T Consensus 6 ~K~~IA~~Aa~~I~-----dg~~I~Lds--G-------ST~~~la~~L~~~~~~itv~VTnS~------~-~a~~l~~~g 64 (219)
T 1m0s_A 6 MKKLAAQAALQYVK-----ADRIVGVGS--G-------STVNCFIEALGTIKDKIQGAVAASK------E-SEELLRKQG 64 (219)
T ss_dssp HHHHHHHHHGGGCC-----TTSEEEECC--S-------HHHHHHHHHHHTTGGGSCEEEESSH------H-HHHHHHHTT
T ss_pred HHHHHHHHHHHhCC-----CCCEEEEcC--h-------HHHHHHHHHHhccCCCEEEEECChH------H-HHHHHHhCC
Confidence 45678999999998 899988642 3 4788888777543215666455432 2 356777889
Q ss_pred CCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHH-HHHHhCCCeEEEeccCccccCCCCCCCcccccc
Q 017312 229 IPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA-LCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEE 307 (373)
Q Consensus 229 I~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA-~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ie~ 307 (373)
|++..+- .+ .++|+.|+|||.|-.++++..--|-..+- -+......-+|+++.++||......+..+|+|-
T Consensus 65 i~vi~l~------~~--~~~D~af~Gadgid~~~g~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg~~~~lPvEV 136 (219)
T 1m0s_A 65 IEVFNAN------DV--SSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVDSSKQVDVLGSTFPLPVEV 136 (219)
T ss_dssp CCBCCGG------GC--SCEEEEEECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEGGGBCSSTTSSSCEEEEE
T ss_pred CeEEEeC------cc--ccCCEEEECcCeECCCCCeecCHHHHHHHHHHHHHhcCcEEEEEeCcHHhhccCCCCCEEEEE
Confidence 9887642 12 58999999999998876665444444433 122234558999999999987654334566654
No 14
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=97.53 E-value=0.00029 Score=65.01 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC---C-C-eeEEEEecCCCCCcchHHHHHH
Q 017312 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE---G-V-LERAYCSETRPFNQGSRLTAFE 223 (373)
Q Consensus 149 a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~---g-~-~~~V~v~EsrP~~qG~rlta~~ 223 (373)
.-++|++.++++|. +|++|.--+ | +|+..+++...+. + . +++| |+=| .+ ++.+
T Consensus 6 ~K~~IA~~Aa~~I~-----dg~~I~Lds--G-------ST~~~~a~~L~~~~~~~~l~~itv-VTnS------~~-~a~~ 63 (229)
T 1lk5_A 6 MKKIAAKEALKFIE-----DDMVIGLGT--G-------STTAYFIKLLGEKLKRGEISDIVG-VPTS------YQ-AKLL 63 (229)
T ss_dssp HHHHHHHHHGGGCC-----TTCEEEECC--S-------HHHHHHHHHHHHHHHTTSSCSCEE-EESS------HH-HHHH
T ss_pred HHHHHHHHHHHhCC-----CCCEEEEcC--h-------HHHHHHHHHHhhhhhhccCCCEEE-ECCc------HH-HHHH
Confidence 45678999999998 899988642 3 4777777766433 2 1 5666 3333 12 4567
Q ss_pred HhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHH-HHHHhCCCeEEEeccCccccCCCCCCCc
Q 017312 224 LVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA-LCAKFHNILFYVAAPLTSIDLTLSSGQE 302 (373)
Q Consensus 224 L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA-~~Ak~~~vPvyV~a~~~k~~~~~~~~~~ 302 (373)
|.+.||++..+- .+ .++|+.|+|||.|-.++++..--|-..+- -+......-+|+++..+||......+..
T Consensus 64 l~~~gi~vi~l~------~~--~~~D~af~Gadgid~~~g~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg~~~~ 135 (229)
T 1lk5_A 64 AIEHDIPIASLD------QV--DAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYLCQKMP 135 (229)
T ss_dssp HHHTTCCBCCGG------GC--SCEEEEEECCSEECTTCCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSTTSSCC
T ss_pred HHhCCCeEEEeC------Cc--ccCCEEEECCCeECCCCCeecCHHHHHHHHHHHHHhcCCeEEEEchhhhhhhcCCCCC
Confidence 778899887642 12 48999999999998876665544444443 1233455689999999999876543345
Q ss_pred ccccc
Q 017312 303 IVIEE 307 (373)
Q Consensus 303 i~ie~ 307 (373)
+|+|-
T Consensus 136 lPvEV 140 (229)
T 1lk5_A 136 VPIEV 140 (229)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66654
No 15
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=97.34 E-value=0.00084 Score=61.74 Aligned_cols=128 Identities=19% Similarity=0.128 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC----CCeeEEEEecCCCCCcchHHHHHHH
Q 017312 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE----GVLERAYCSETRPFNQGSRLTAFEL 224 (373)
Q Consensus 149 a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~----g~~~~V~v~EsrP~~qG~rlta~~L 224 (373)
.-+.|++.+++++. +|++|.--+ | ||+..+++...+. +.++++ |+=| . -++..|
T Consensus 4 ~K~~iA~~A~~~V~-----dg~vIgLGs--G-------ST~~~~i~~L~~~~~~~~~~i~~-VttS------~-~t~~~l 61 (225)
T 3l7o_A 4 LKKIAGVRAAQYVE-----DGMIVGLGT--G-------STAYYFVEEVGRRVQEEGLQVIG-VTTS------S-RTTAQA 61 (225)
T ss_dssp HHHHHHHHHHTTCC-----TTCEEEECC--S-------TTHHHHHHHHHHHHHHHCCCCEE-EESS------H-HHHHHH
T ss_pred HHHHHHHHHHHhCC-----CCCEEEECC--c-------HHHHHHHHHHHHhhhhcCCCEEE-EcCC------H-HHHHHH
Confidence 34578888999999 899887743 3 4777777665443 556666 3333 1 245567
Q ss_pred hhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHH-HHHHhCCCeEEEeccCccccCCCCCCCcc
Q 017312 225 VHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA-LCAKFHNILFYVAAPLTSIDLTLSSGQEI 303 (373)
Q Consensus 225 ~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA-~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i 303 (373)
.+.|||+..+-+ ...+|+.|.|||.|-.+..++---|...+= -+-.....-||+++..+||....- ...+
T Consensus 62 ~~~Gi~l~~l~~--------~~~iD~a~dGADevd~~~~liKGgG~al~rEKiva~~A~~~iviaD~sK~~~~Lg-~~pl 132 (225)
T 3l7o_A 62 QALGIPLKSIDE--------VDSVDVTVDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDESKMVDTLG-AFRL 132 (225)
T ss_dssp HHHTCCBCCGGG--------SSCEEEEEECCSEECTTSCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSSC-SSCE
T ss_pred hccCceEEecCc--------ccccCEEEEcCCccCcccCeecCchhhhHHHHHHHHhCCeEEEEEecccchhhcC-CCCE
Confidence 788999876532 379999999999999888776544443321 122234567999999999987643 2346
Q ss_pred cccc
Q 017312 304 VIEE 307 (373)
Q Consensus 304 ~ie~ 307 (373)
|+|-
T Consensus 133 PvEV 136 (225)
T 3l7o_A 133 PVEV 136 (225)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
No 16
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=97.26 E-value=0.00014 Score=66.64 Aligned_cols=129 Identities=17% Similarity=0.038 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCC
Q 017312 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDR 228 (373)
Q Consensus 149 a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~G 228 (373)
.-++|++.++++|. +|++|.--+ | +|+..+++...+.+.+++|.|+=|-+. +.+|.+.|
T Consensus 6 ~K~~IA~~Aa~lI~-----dg~~I~Lds--G-------ST~~~la~~L~~~~~~itv~VTnS~~~-------a~~l~~~g 64 (219)
T 1o8b_A 6 LKKAVGWAALQYVQ-----PGTIVGVGT--G-------STAAHFIDALGTMKGQIEGAVSSSDAS-------TEKLKSLG 64 (219)
T ss_dssp ----------------------CEEECC--S-------CC---------------CCEEESCCC----------------
T ss_pred HHHHHHHHHHHhCC-----CCCEEEEcC--h-------HHHHHHHHHHhccCCCEEEEECCcHHH-------HHHHHhCC
Confidence 45678899999999 899887643 3 477777776643321566545555332 33566668
Q ss_pred CCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHH-HHHHhCCCeEEEeccCccccCCCCCCCcccccc
Q 017312 229 IPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA-LCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEE 307 (373)
Q Consensus 229 I~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA-~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ie~ 307 (373)
|++..+- .+ .++|+.|+|||.|-.++.+..--|-..+- -+......-+|+++.++||..... +..+|+|-
T Consensus 65 i~vi~l~------~~--~~~D~af~Gadgid~~~~~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg-~~~lPvEV 135 (219)
T 1o8b_A 65 IHVFDLN------EV--DSLGIYVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILG-KFPLPVEV 135 (219)
T ss_dssp ---CCGG------GC--SCEEEEEECCSEECTTSCEECCCCC-HHHHHHHHHHEEEEEEEEEGGGBCSSBT-SSCEEEEE
T ss_pred CeEEEeC------cc--CcCCEEEECcceECCCCCeecCHHHHHHHHHHHHHhcCcEEEEEeCcccccccC-CCcEEEEE
Confidence 8776552 12 58999999999999887766433333333 122234458999999999987643 33566654
No 17
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=97.12 E-value=0.0016 Score=60.87 Aligned_cols=128 Identities=16% Similarity=0.120 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHH---CCCeeEEEEecCCCCCcchHHHHHHHh
Q 017312 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHS---EGVLERAYCSETRPFNQGSRLTAFELV 225 (373)
Q Consensus 149 a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~---~g~~~~V~v~EsrP~~qG~rlta~~L~ 225 (373)
..+.|++.++++|. +|++|..- || ||+..+++...+ .|.++++ |+=| . -++..|.
T Consensus 27 ~K~~iA~~A~~~V~-----dg~vIgLG--sG-------ST~~~~i~~L~~~~~~gl~Itv-VttS------~-~ta~~l~ 84 (255)
T 3hhe_A 27 LKKMAALKALEFVE-----DDMRLGIG--SG-------STVNEFIPLLGERVANGLRVTC-VATS------Q-YSEQLCH 84 (255)
T ss_dssp HHHHHHHHHHTTCC-----TTEEEEEC--CS-------HHHHHHHHHHHHHHHTTCCEEE-EESS------H-HHHHHHH
T ss_pred HHHHHHHHHHHhCC-----CCCEEEEC--Cc-------HHHHHHHHHHHHhhccCCcEEE-EcCC------H-HHHHHHH
Confidence 34568888899998 88888763 23 477767665533 3445554 3322 2 2466788
Q ss_pred hCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHH-HHHHHHhCCCeEEEeccCccccCCCCCCCccc
Q 017312 226 HDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYS-LALCAKFHNILFYVAAPLTSIDLTLSSGQEIV 304 (373)
Q Consensus 226 ~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~-lA~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ 304 (373)
+.|||+..+-+ + .++|+.|.|||.|-.+..++---|... ---+......-|||++..+||....- ...+|
T Consensus 85 ~~GI~l~~l~~------~--~~iD~afdGADeVD~~~~lIKGgG~al~rEKiva~~A~~~ivIaD~SK~v~~LG-~~plP 155 (255)
T 3hhe_A 85 KFGVPISTLEK------I--PELDLDIDGADEIGPEMTLIKGGGGALLHEKIVASASRAMFVIADETKMVKTLG-AFALP 155 (255)
T ss_dssp HTTCCBCCTTT------C--CSBSEEEECCSEECGGGCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSSC-SSCEE
T ss_pred HcCCcEEeccc------c--cccCEEEECCCccccccCeeeCchhhhHHHHHHHHhcCcEEEEEeCCCChhhhC-CCCeE
Confidence 89999876522 2 689999999999988876654333322 21233345667999999999987653 33466
Q ss_pred ccc
Q 017312 305 IEE 307 (373)
Q Consensus 305 ie~ 307 (373)
+|-
T Consensus 156 VEV 158 (255)
T 3hhe_A 156 IEV 158 (255)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 18
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=96.98 E-value=0.0047 Score=56.76 Aligned_cols=128 Identities=15% Similarity=0.109 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC----CCeeEEEEecCCCCCcchHHHHHHH
Q 017312 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE----GVLERAYCSETRPFNQGSRLTAFEL 224 (373)
Q Consensus 149 a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~----g~~~~V~v~EsrP~~qG~rlta~~L 224 (373)
.-++|++.++++|. +|++|..-+ | +|+..+++...+. +.+++++ +=| .+ ++..|
T Consensus 6 ~K~~iA~~A~~~I~-----~g~~Iglgs--G-------ST~~~~~~~L~~~~~~~~l~itvV-tnS------~~-~a~~l 63 (226)
T 2pjm_A 6 LKLKVAKEAVKLVK-----DGMVIGLGT--G-------STAALFIRELGNRIREEELTVFGI-PTS------FE-AKMLA 63 (226)
T ss_dssp HHHHHHHHHGGGCC-----TTCEEEECC--S-------HHHHHHHHHHHHHHHHHTCCCEEE-ESS------HH-HHHHH
T ss_pred HHHHHHHHHHHHCC-----CCCEEEECC--C-------HHHHHHHHHHHhhhhccCCcEEEE-eCc------HH-HHHHH
Confidence 45678899999999 899887743 3 4777777655432 3355543 322 12 45678
Q ss_pred hhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecC-CCeecccchHHH-HHHHHhCCCeEEEeccCccccCCCCCCCc
Q 017312 225 VHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAAN-GDTANKIGTYSL-ALCAKFHNILFYVAAPLTSIDLTLSSGQE 302 (373)
Q Consensus 225 ~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~n-G~v~nkiGT~~l-A~~Ak~~~vPvyV~a~~~k~~~~~~~~~~ 302 (373)
.+.||++.-+.+ + . +|+.|.|||.|-.+ +.++---|...+ --+......-|++++..+||....-....
T Consensus 64 ~~~gi~v~~l~~------~--~-iD~afdGaDevd~~t~~likGgg~al~rEKiva~~A~~~IviaD~sK~~~~Lg~~~~ 134 (226)
T 2pjm_A 64 MQYEIPLVTLDE------Y--D-VDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVLVDESKLVKKLGEKFP 134 (226)
T ss_dssp HHTTCCBCCTTT------C--C-CSEEEECCSEEETTTCCEECCTTSCHHHHHHHHHHSSEEEEEEEGGGEESSTTSSSC
T ss_pred HhcCCeEEeecc------c--c-CCEEEEcCceeccccCceeeccchhhHHHHHHHHHhCcEEEEEecchhhhccCCCCC
Confidence 899999773221 2 4 99999999999999 666433333222 22222345679999999999976543345
Q ss_pred ccccc
Q 017312 303 IVIEE 307 (373)
Q Consensus 303 i~ie~ 307 (373)
+|+|-
T Consensus 135 lPvEV 139 (226)
T 2pjm_A 135 IPVEV 139 (226)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66653
No 19
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=96.80 E-value=0.007 Score=56.04 Aligned_cols=132 Identities=17% Similarity=0.105 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCC
Q 017312 150 NKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 229 (373)
Q Consensus 150 ~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI 229 (373)
-+.+++.+++++.+.+. +|++|-.- || ||+..+++...+..++++..|+=| .-++..|.+.||
T Consensus 15 K~~aA~~A~~~V~d~~~-~g~vIGLG--tG-------ST~~~~i~~L~~~~~~i~~~V~tS-------~~t~~~~~~~Gi 77 (239)
T 3uw1_A 15 KRLVGEAAARYVTDNVP-QGAVIGVG--TG-------STANCFIDALAAVKDRYRGAVSSS-------VATTERLKSHGI 77 (239)
T ss_dssp HHHHHHHHHHHHHHHSC-TTCEEEEC--CS-------HHHHHHHHHHHTTGGGSCEEEESS-------HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhccCc-CCCEEEEC--cc-------HHHHHHHHHHHhhhccceEEeCCc-------HHHHHHHHHcCC
Confidence 45677778888882111 28887663 33 477778877765434555344433 235667889999
Q ss_pred CeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHH-HHHHHhCCCeEEEeccCccccCCCCCCCcccccc
Q 017312 230 PATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSL-ALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEE 307 (373)
Q Consensus 230 ~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~l-A~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ie~ 307 (373)
|+..+-+ ...+|+.|.|||-|-.++.++--=|...+ =-+......-|||++..+|+....- ...+|+|-
T Consensus 78 ~l~~l~~--------~~~iD~a~DGADeVd~~l~lIKGgGgal~rEKiva~~A~~~ivIaD~sK~v~~Lg-~~plPVEV 147 (239)
T 3uw1_A 78 RVFDLNE--------IESLQVYVDGADEIDESGAMIKGGGGALTREKIVASVAETFVCIADASKRVAMLG-QFPLPVEV 147 (239)
T ss_dssp CBCCGGG--------CSCEEEEEECCSEECTTCCEECCSSSCHHHHHHHHHHEEEEEEEEEGGGBCSSBT-SSCEEEEE
T ss_pred cEEeccc--------ccccCEEEECCcccCcccCEecCchHHHHHHHHHHHhCCcEEEEEecchhhhhcC-CCCeEEEE
Confidence 9875421 26999999999999888766543332221 1122233457899999999987543 23455553
No 20
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.0039 Score=58.61 Aligned_cols=131 Identities=15% Similarity=0.064 Sum_probs=84.8
Q ss_pred HHHHHHHHHHH-HhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC---CC------eeEEEEecCCCCCcchH
Q 017312 149 TNKAIGSYGAS-FLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE---GV------LERAYCSETRPFNQGSR 218 (373)
Q Consensus 149 a~~~I~~~g~~-~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~---g~------~~~V~v~EsrP~~qG~r 218 (373)
.-++|++.+++ +|... +|++|..- || +|+..+++...+. +. +++| |+=| .+
T Consensus 21 ~K~~IA~~Aa~~~I~~~---dg~~IgLg--sG-------ST~~~~a~~L~~~~~~~~l~~~~~~itv-VTnS------~~ 81 (264)
T 1xtz_A 21 AKRAAAYRAVDENLKFD---DHKIIGIG--SG-------STVVYVAERIGQYLHDPKFYEVASKFIC-IPTG------FQ 81 (264)
T ss_dssp HHHHHHHHHHHHHCCTT---TCCEEEEC--CC-------SSTHHHHHHHHHHHTSTTTHHHHTTCEE-EESS------HH
T ss_pred HHHHHHHHHHHhccCCC---CCCEEEEc--Ch-------HHHHHHHHHHhHhhhccccccccCCEEE-ECCc------HH
Confidence 45678888888 77611 47787753 33 4677777666432 22 3665 3332 22
Q ss_pred HHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHH-HHHhCCCeEEEeccCcccc-CC
Q 017312 219 LTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLAL-CAKFHNILFYVAAPLTSID-LT 296 (373)
Q Consensus 219 lta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~-~Ak~~~vPvyV~a~~~k~~-~~ 296 (373)
++.+|.+.||++..+ + .+ ..+|+.|.|||.|-.++.+.---|-..+-- +......-|||++..+||. ..
T Consensus 82 -~a~~l~~~gi~v~~l-~-----~~--~~iD~afdGADgId~~~~likg~g~A~~kekiva~~A~~~IvlaD~SK~~~~~ 152 (264)
T 1xtz_A 82 -SRNLILDNKLQLGSI-E-----QY--PRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKTFIVVADSRKKSPKH 152 (264)
T ss_dssp -HHHHHHHTTCEECCT-T-----TC--CSEEEEEECCSEECTTSCEECCTTSCHHHHHHHHTTEEEEEEEEEGGGBCSSS
T ss_pred -HHHHHHHCCCeEEEe-h-----hc--CcCCEEEECCcccCCCCCeecCHHHHHHHHHHHHHhhCcEEEEEEcccccccc
Confidence 456777889987766 2 22 589999999999998876665555555543 2445677999999999999 54
Q ss_pred CCCCC--cccccc
Q 017312 297 LSSGQ--EIVIEE 307 (373)
Q Consensus 297 ~~~~~--~i~ie~ 307 (373)
.-... .+|+|-
T Consensus 153 Lg~~~~~plPVEV 165 (264)
T 1xtz_A 153 LGKNWRQGVPIEI 165 (264)
T ss_dssp BTSSCCSCEEEEE
T ss_pred ccccCCCCEeEEE
Confidence 32222 466654
No 21
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=84.32 E-value=2.9 Score=35.76 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=53.9
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhh-CCCCeEEEc------chHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHH
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVH-DRIPATLIA------DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA 274 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~-~GI~vtlI~------Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA 274 (373)
.|+++.+++ |++.|.+ .||+|+.+. |..++..+++++||.||-=-|-. |.-...--.+.+=
T Consensus 39 Gf~l~AT~g---------Ta~~L~e~~Gl~v~~v~k~~eGG~p~I~d~I~~geIdlVInt~~pl---~~~~h~~D~~~Ir 106 (152)
T 1b93_A 39 QHVLYATGT---------TGNLISRATGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPL---NAVPHDPDVKALL 106 (152)
T ss_dssp TSEEEEETT---------HHHHHHHHHCCCCEEECCGGGTHHHHHHHHHHTTCCCEEEEECCTT---SCCTTHHHHHHHH
T ss_pred CCEEEEccH---------HHHHHHHHhCceeEEEEecCCCCCchHHHHHHCCCccEEEEcCCcc---cCCcccccHHHHH
Confidence 578888875 5777888 899999883 33578889999999998543300 3222234457888
Q ss_pred HHHHhCCCeEEEe
Q 017312 275 LCAKFHNILFYVA 287 (373)
Q Consensus 275 ~~Ak~~~vPvyV~ 287 (373)
.+|-.|+||++--
T Consensus 107 R~A~~~~IP~~T~ 119 (152)
T 1b93_A 107 RLATVWNIPVATN 119 (152)
T ss_dssp HHHHHTTCCEESS
T ss_pred HHHHHcCCCEEeC
Confidence 8999999999853
No 22
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3
Probab=83.19 E-value=3.8 Score=37.99 Aligned_cols=95 Identities=11% Similarity=0.087 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC-CCeeEEEEecC-----CCCC---cchHH
Q 017312 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE-GVLERAYCSET-----RPFN---QGSRL 219 (373)
Q Consensus 149 a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~-g~~~~V~v~Es-----rP~~---qG~rl 219 (373)
..+.|+.++++.|. ||++|-+ |.|.-..+...+.+. ++.+.+. .|+ .|.. .+..
T Consensus 7 ~~e~Ia~~aA~~i~-----dG~~v~l----------GiGiP~~va~~~~~~~~~~l~l~-~E~G~lg~~p~~~~~~~~d- 69 (260)
T 1poi_B 7 NKEMQAVTIAKQIK-----NGQVVTV----------GTGLPLIGASVAKRVYAPDCHII-VESGLMDCSPVEVPRSVGD- 69 (260)
T ss_dssp HHHHHHHHHHTTCC-----TTCEEEC----------CSSHHHHHHHHHHHTTCTTCEEE-ETTTEEEECCSSCCSSTTC-
T ss_pred HHHHHHHHHHHhCC-----CCCEEEe----------CCCHHHHHHHHHHHhcCCCEEEE-EeCceecCcccCcccCccC-
Confidence 35689999999999 8988776 334323344444442 3334333 354 3321 1111
Q ss_pred HHHHHhhCCCCeEEEcchH-HHHH-----HHcCCCCEEEEcceeEecCCCee
Q 017312 220 TAFELVHDRIPATLIADSA-AAAL-----MKDGRVSAVIVGADRVAANGDTA 265 (373)
Q Consensus 220 ta~~L~~~GI~vtlI~Dsa-~~~~-----m~~~~vd~VivGAd~I~~nG~v~ 265 (373)
..+.. ...-+.++. ..-+ ++.+++|..|+||=-|-.+|.+.
T Consensus 70 --~~~~~---~a~~~~~~~~~fd~~~~~~~~~g~~Dv~ilGa~qVD~~Gnvn 116 (260)
T 1poi_B 70 --LRFMA---HCGCIWPNVRFVGFEINEYLHKANRLIAFIGGAQIDPYGNVN 116 (260)
T ss_dssp --HHHHT---SEEEECCHHHHHHHHHHHHHHTCCCEEEEECCSEECTTCCEE
T ss_pred --CCcEe---ehhhhcCHHHHhcccchhhhhcCCccEEEeChHHhCCCCCcc
Confidence 11211 233445553 3445 78899999999999999999987
No 23
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=83.16 E-value=3.3 Score=37.81 Aligned_cols=122 Identities=18% Similarity=0.125 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHH----CCCeeEEEEecCCCCCcchHHHHHHHh
Q 017312 150 NKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHS----EGVLERAYCSETRPFNQGSRLTAFELV 225 (373)
Q Consensus 150 ~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~----~g~~~~V~v~EsrP~~qG~rlta~~L~ 225 (373)
-+..++.++++++ +|.+|=-- || ||+.-+++...+ .+.. +.++-| . .-|+..+.
T Consensus 8 K~~aa~~A~~~V~-----~gmvvGlG--TG-------STv~~~i~~L~~~~~~~~l~--i~~V~t---S---~~t~~~a~ 65 (228)
T 4gmk_A 8 KQLVGTKAVEWIK-----DGMIVGLG--TG-------STVKYMVDALGKRVNEEGLD--IVGVTT---S---IRTAEQAK 65 (228)
T ss_dssp HHHHHHHHGGGCC-----TTCEEEEC--CS-------HHHHHHHHHHHHHHHHHCCC--CEEEES---S---HHHHHHHH
T ss_pred HHHHHHHHHHhCC-----CCCEEEEC--ch-------HHHHHHHHHHHHHHhhcCCc--EEEEeC---c---HHHHHHHH
Confidence 3455667788888 78766543 23 477666655432 2433 332222 1 22455678
Q ss_pred hCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchH-----HHHHHHHhCCCeEEEeccCccccCCCCCC
Q 017312 226 HDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTY-----SLALCAKFHNILFYVAAPLTSIDLTLSSG 300 (373)
Q Consensus 226 ~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~-----~lA~~Ak~~~vPvyV~a~~~k~~~~~~~~ 300 (373)
+.|||+.-+.+ . ..+|..|=|||-|-.|...+=-=|.. .+|.+|+ -|+|++..+|+....- .
T Consensus 66 ~~Gi~l~~l~~------~--~~iD~~iDGADEvd~~l~lIKGGGgal~rEKivA~~a~----~fI~IaD~sK~v~~LG-~ 132 (228)
T 4gmk_A 66 SLGIVIKDIDE------V--DHIDLTIDGADEISSDFQGIKGGGAALLYEKIVATKSN----KNMWIVDESKMVDDLG-Q 132 (228)
T ss_dssp HTTCCBCCGGG------S--SCEEEEEECCSEECTTSCEECCTTSCHHHHHHHHHHEE----EEEEEEEGGGBCSSSC-S
T ss_pred HcCCceeChHH------C--CccceEeccHHHhhhchhhhhcchHHHHHHHHHHHhhh----heEEEeccccccCccC-C
Confidence 89999876544 2 78999999999999888766433332 2344444 5899999999987642 2
Q ss_pred Cccccc
Q 017312 301 QEIVIE 306 (373)
Q Consensus 301 ~~i~ie 306 (373)
..+|+|
T Consensus 133 fplPVE 138 (228)
T 4gmk_A 133 FPLPVE 138 (228)
T ss_dssp SCEEEE
T ss_pred eeEEEE
Confidence 335555
No 24
>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B
Probab=81.07 E-value=2.7 Score=37.71 Aligned_cols=98 Identities=24% Similarity=0.313 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCC-----CCCcchHHHHHHH
Q 017312 150 NKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETR-----PFNQGSRLTAFEL 224 (373)
Q Consensus 150 ~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~Esr-----P~~qG~rlta~~L 224 (373)
++.|+..++..|+ +|++|-. |.|.-..+-..+. ++. -.+..|+- |...+.... ..|
T Consensus 2 r~~Ia~raA~el~-----dG~~vnl----------GIGiP~~va~~~~--~~~-v~l~~E~G~~g~~p~p~~~~~d-~~~ 62 (207)
T 3rrl_B 2 REAIIKRAAKELK-----EGMYVNL----------GIGLPTLVANEVS--GMN-IVFQSENGLLGIGAYPLEGSVD-ADL 62 (207)
T ss_dssp HHHHHHHHHTTCC-----TTCEEEE----------CTTGGGGGGGGGS--SSC-CEEEETTTEEEECCCCCTTCCC-TTC
T ss_pred hHHHHHHHHHhCC-----CCCEEEE----------CCChHHHHHHhcc--CCc-EEEEeccceecCcCCCCccccC-HhH
Confidence 4678999999999 8887765 2232111112222 443 34556654 332111111 134
Q ss_pred hhCCC-Ce-----EEEcchH-HHHHHHcCCCCEEEEcceeEecCCCeec
Q 017312 225 VHDRI-PA-----TLIADSA-AAALMKDGRVSAVIVGADRVAANGDTAN 266 (373)
Q Consensus 225 ~~~GI-~v-----tlI~Dsa-~~~~m~~~~vd~VivGAd~I~~nG~v~n 266 (373)
...|- ++ .-+-|++ ...+++.+++|..++||--|-.+|.+.|
T Consensus 63 in~G~~~~t~~~~~~~~~~~~~F~~~~gG~~Dvailga~qVD~~Gnvn~ 111 (207)
T 3rrl_B 63 INAGKETITVVPGASFFNSADSFAMIRGGHIDLAILGGMEVSQNGDLAN 111 (207)
T ss_dssp BCTTSBBCCEEEEEEECCHHHHHHHHHTTCCSEEEECCSEEETTSCEEC
T ss_pred eecCCceeeecCCceeeCCHHHHHHHhCCCeeEEEECHHHHCcCCCccc
Confidence 44442 12 2234444 5566888999999999999999999874
No 25
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=80.23 E-value=3.3 Score=34.71 Aligned_cols=82 Identities=27% Similarity=0.280 Sum_probs=58.1
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcc----------hHHHHHHHcCCCCEEEEcceeE
Q 017312 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD----------SAAAALMKDGRVSAVIVGADRV 258 (373)
Q Consensus 189 al~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~D----------sa~~~~m~~~~vd~VivGAd~I 258 (373)
++.+.+..++ ..|++|.++ | |++.|.+.||+|+.+.. ..+.-.+++++||.||--.+.
T Consensus 39 l~~~a~~l~~--lGf~i~AT~------G---Ta~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~~- 106 (143)
T 2yvq_A 39 FLGVAEQLHN--EGFKLFATE------A---TSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNN- 106 (143)
T ss_dssp HHHHHHHHHT--TTCEEEEEH------H---HHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECCCC-
T ss_pred HHHHHHHHHH--CCCEEEECc------h---HHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECCCC-
Confidence 3444455544 467888776 2 56779999999999863 457778899999999865433
Q ss_pred ecCCCeecccchHHHHHHHHhCCCeEEE
Q 017312 259 AANGDTANKIGTYSLALCAKFHNILFYV 286 (373)
Q Consensus 259 ~~nG~v~nkiGT~~lA~~Ak~~~vPvyV 286 (373)
.--..--.|.+=.+|=.|+||++-
T Consensus 107 ----~~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 107 ----NTKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp ----CGGGHHHHHHHHHHHHHTTCCEEC
T ss_pred ----CCcCCccHHHHHHHHHHhCCCeEc
Confidence 111134567888899999999874
No 26
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=78.57 E-value=5.9 Score=36.04 Aligned_cols=127 Identities=17% Similarity=0.095 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCC--CeeEEEEecCCCCCcchHHHHHHHhhCC
Q 017312 151 KAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEG--VLERAYCSETRPFNQGSRLTAFELVHDR 228 (373)
Q Consensus 151 ~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g--~~~~V~v~EsrP~~qG~rlta~~L~~~G 228 (373)
+..++.++++++ +|.+|=-- || ||+.-+++.+.+.. ....|....|. .-++..+.+.|
T Consensus 8 ~~aa~~A~~~V~-----~gmvvGlG--TG-------STv~~~I~~L~~~~~~~~l~i~~v~tS------~~t~~~a~~~g 67 (226)
T 3ixq_A 8 LKVAKEAVKLVK-----DGMVIGLG--TG-------STAALFIRELGNRIREEELTVFGIPTS------FEAKMLAMQYE 67 (226)
T ss_dssp HHHHHHHGGGCC-----TTCEEEEC--CS-------HHHHHHHHHHHHHHHHHTCCCEEEESS------HHHHHHHHHTT
T ss_pred HHHHHHHHHhCC-----CCCEEEeC--cH-------HHHHHHHHHHHHhhhhcCCeeEeeccc------HHHHHHHHhcC
Confidence 455667788888 78766442 23 47776776553311 12234444332 12344566889
Q ss_pred CCeEEEcchHHHHHHHcCCCCEEEEcceeEecCC-CeecccchHHHH--HHHHhCCCeEEEeccCccccCCCCCCCcccc
Q 017312 229 IPATLIADSAAAALMKDGRVSAVIVGADRVAANG-DTANKIGTYSLA--LCAKFHNILFYVAAPLTSIDLTLSSGQEIVI 305 (373)
Q Consensus 229 I~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG-~v~nkiGT~~lA--~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~i 305 (373)
||++-+.+ ..+|..|=|||-|-..+ ..+ |=|-..+- =+-.....-|+|++..+|+....-....+|+
T Consensus 68 i~l~~l~~---------~~iDl~iDGADEvd~~~l~lI-KGGGgAl~rEKivA~~a~~~I~I~D~sK~v~~LG~~fplPV 137 (226)
T 3ixq_A 68 IPLVTLDE---------YDVDIAFDGADEVEETTLFLI-KGGGGCHTQEKIVDYNANEFVVLVDESKLVKKLGEKFPIPV 137 (226)
T ss_dssp CCBCCTTT---------CCCSEEEECCSEEETTTCCEE-CCTTSCHHHHHHHHHHSSEEEEEEEGGGEESSTTSSSCEEE
T ss_pred CCcccccc---------ccccEEEeCcchhccccceEE-ecchHHHHHHHHHHHHhhheEEEeccccchhhcCCCCCccE
Confidence 99865533 24999999999995322 232 33322111 1122345678999999999765432234666
Q ss_pred cc
Q 017312 306 EE 307 (373)
Q Consensus 306 e~ 307 (373)
|-
T Consensus 138 EV 139 (226)
T 3ixq_A 138 EV 139 (226)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 27
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=75.80 E-value=2.9 Score=34.05 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=55.3
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEE-cchH-HHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHH
Q 017312 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI-ADSA-AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (373)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI-~Dsa-~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~A 277 (373)
.++.+|.++|-.|... .+....|.+.|..|+-. .+.. +-..+++.+.|.|++ |--+++++ | +.++-.-
T Consensus 6 ~r~~rILiVdD~~~~~--~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~Dlvll--Di~mP~~~-----G-~el~~~l 75 (123)
T 2lpm_A 6 ERRLRVLVVEDESMIA--MLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAII--DVNLDGEP-----S-YPVADIL 75 (123)
T ss_dssp CCCCCEEEESSSTTTS--HHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEE--CSSSSSCC-----S-HHHHHHH
T ss_pred CCCCEEEEEeCCHHHH--HHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEE--ecCCCCCC-----H-HHHHHHH
Confidence 5678899999998874 34566788999998644 3433 334567789999988 44555432 3 4566666
Q ss_pred HhCCCeEEEecc
Q 017312 278 KFHNILFYVAAP 289 (373)
Q Consensus 278 k~~~vPvyV~a~ 289 (373)
|+.++||++++.
T Consensus 76 r~~~ipvI~lTa 87 (123)
T 2lpm_A 76 AERNVPFIFATG 87 (123)
T ss_dssp HHTCCSSCCBCT
T ss_pred HcCCCCEEEEec
Confidence 778999888754
No 28
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=75.58 E-value=6 Score=34.66 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=54.4
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhh-CCCCeEEEc------chHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHH
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVH-DRIPATLIA------DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA 274 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~-~GI~vtlI~------Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA 274 (373)
.|++|.+++ |++.|.+ .||+|+.+. |..++..+++++||.||-=-|-. |.-...--.+.+=
T Consensus 55 Gf~L~AT~g---------Ta~~L~e~~Gl~v~~v~k~~eGG~pqI~d~I~~geIdlVInt~dPl---~~~~h~~D~~~IR 122 (178)
T 1vmd_A 55 KHELYATGT---------TGALLQEKLGLKVHRLKSGPLGGDQQIGAMIAEGKIDVLIFFWDPL---EPQAHDVDVKALI 122 (178)
T ss_dssp TSEEEECHH---------HHHHHHHHHCCCCEECSCGGGTHHHHHHHHHHTTSCCEEEEECCSS---SCCTTSCCHHHHH
T ss_pred CCEEEEchH---------HHHHHHHHhCceeEEEeecCCCCCchHHHHHHCCCccEEEEccCcc---CCCcccccHHHHH
Confidence 578887763 6777888 999999883 33578889999999998644310 3222244568888
Q ss_pred HHHHhCCCeEEEe
Q 017312 275 LCAKFHNILFYVA 287 (373)
Q Consensus 275 ~~Ak~~~vPvyV~ 287 (373)
.+|-.|+||++--
T Consensus 123 R~A~~~~IP~~Tn 135 (178)
T 1vmd_A 123 RIATVYNIPVAIT 135 (178)
T ss_dssp HHHHHTTCCEESS
T ss_pred HHHHHcCCCEEeC
Confidence 9999999999853
No 29
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=71.36 E-value=6.5 Score=32.83 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=49.9
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhh-CCCCeEEEc------chHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHH
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVH-DRIPATLIA------DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA 274 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~-~GI~vtlI~------Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA 274 (373)
.|+++.+++ |++.|.+ .||+|+.+. |..++..+++++||.||-=-|-. |.-...--.+.+=
T Consensus 31 Gf~l~AT~g---------Ta~~L~e~~Gl~v~~v~k~~~eG~p~I~d~I~~geIdlVInt~~pl---~~~~h~~D~~~Ir 98 (134)
T 2xw6_A 31 RFPLVATGT---------TGRRIEEATGLTVEKLLSGPLGGDQQMGARVAEGRILAVIFFRDPL---TAQPHEPDVQALL 98 (134)
T ss_dssp TSCEEECHH---------HHHHHHHHHCCCCEECSCGGGTHHHHHHHHHHTTCEEEEEEECCTT---TCCTTSCCSHHHH
T ss_pred CCEEEEccH---------HHHHHHHhhCceEEEEEecCCCCcchHHHHHHCCCccEEEEccCcc---cCCCccchHHHHH
Confidence 456666653 5666777 788888773 23478889999999998643300 3222234457888
Q ss_pred HHHHhCCCeEEE
Q 017312 275 LCAKFHNILFYV 286 (373)
Q Consensus 275 ~~Ak~~~vPvyV 286 (373)
.+|-.|+||++-
T Consensus 99 R~A~~~~IP~~T 110 (134)
T 2xw6_A 99 RVCDVHGVPLAT 110 (134)
T ss_dssp HHHHHHTCCEEC
T ss_pred HHHHHcCCCeEc
Confidence 889999999885
No 30
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=70.39 E-value=37 Score=26.69 Aligned_cols=60 Identities=7% Similarity=0.066 Sum_probs=36.3
Q ss_pred HhhCCC-CeEEE--cchH---HHH-HHHcCCCCEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCeEEEe
Q 017312 224 LVHDRI-PATLI--ADSA---AAA-LMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 224 L~~~GI-~vtlI--~Dsa---~~~-~m~~~~vd~VivGAd~I~~nG~v~n-kiGT~~lA~~Ak~~~vPvyV~ 287 (373)
+.+.|+ ++... ..+. +.. +.++.++|.+++|+..- |.+-. -.|+..-.+ .++-++||+|+
T Consensus 78 ~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~---~~~~~~~~Gs~~~~v-l~~~~~pVlvV 145 (146)
T 3s3t_A 78 VATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGT---NSPHRVAVGSTTSYV-VDHAPCNVIVI 145 (146)
T ss_dssp HTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCS---SCTTTCSSCHHHHHH-HHHCSSEEEEE
T ss_pred HHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCC---CCcceEEEcchHHHH-hccCCCCEEEe
Confidence 456788 66543 2222 333 34458999999999753 22222 256655444 56667999986
No 31
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=69.12 E-value=74 Score=31.33 Aligned_cols=85 Identities=24% Similarity=0.196 Sum_probs=43.9
Q ss_pred CCCCEEEEcceeEecCCCeecc-cchHH---------HHHHHHh-CCCeEEEeccCccccCCCCCCCccccccCCcccce
Q 017312 246 GRVSAVIVGADRVAANGDTANK-IGTYS---------LALCAKF-HNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELL 314 (373)
Q Consensus 246 ~~vd~VivGAd~I~~nG~v~nk-iGT~~---------lA~~Ak~-~~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~ 314 (373)
-.-|..|+||=-|-.+|.+.|- +|+.. ++.-|+. .+=-+++++++.. ..|.. + .+.
T Consensus 304 ~~~dv~i~ga~evD~~G~vn~~~~g~~~~~G~GG~~D~~~~A~~s~~gk~ii~~~~t~-----k~G~~-------s-~iv 370 (439)
T 3d3u_A 304 NDRMVSINSCLEMDLMGQAASESIGYEQFSGSGGQVDFLRGAKRSKGGISIMAFPSTA-----KKGTE-------S-RIV 370 (439)
T ss_dssp SSSEEEEECCSCEETTSCC--------------CHHHHHHHHTTSTTCEEEEECCSEE-----TTTTE-------E-SEE
T ss_pred cCCcEEEehheEecCCCCEeeeccCCeeecccccHHHHhhcccccCCCeEEEEEeeec-----CCCCC-------C-eEe
Confidence 3349999999999999998643 55542 2444442 2334566666542 11210 0 111
Q ss_pred eccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcCCC
Q 017312 315 CSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKA 357 (373)
Q Consensus 315 ~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~p~ 357 (373)
... .++ .+=.||-+-++.||||+|++.+.
T Consensus 371 ~~~--------~~g------~~v~~~~~~v~~vVTE~gva~l~ 399 (439)
T 3d3u_A 371 PIL--------KEG------ACVTTGRNEVDYVVTEYGVARLR 399 (439)
T ss_dssp SSC--------C------------CCSTTCSEEEETTEEEECT
T ss_pred ECc--------cCC------CCceeCCCcceEEECCCEEEEeC
Confidence 100 000 13346678999999999999876
No 32
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=69.11 E-value=15 Score=32.95 Aligned_cols=71 Identities=18% Similarity=0.223 Sum_probs=45.7
Q ss_pred ccccHHHHHHHHHHCCCeeEEEEecC-CCCCcchHHHHHHHhhCCCCeEEEc----------chHHHHHHHcCCCCEEEE
Q 017312 185 GYGTALGVIRALHSEGVLERAYCSET-RPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVIV 253 (373)
Q Consensus 185 g~~tal~~l~~a~~~g~~~~V~v~Es-rP~~qG~rlta~~L~~~GI~vtlI~----------Dsa~~~~m~~~~vd~Viv 253 (373)
|.|+-+..|..+.++|....|..+=| +|...|.+ ...+.|||+..+. |..+...+++.++|.+++
T Consensus 14 G~Gsnl~all~~~~~~~~~eI~~Vis~~~~a~~~~----~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~ 89 (215)
T 3tqr_A 14 GNGTNLQAIIGAIQKGLAIEIRAVISNRADAYGLK----RAQQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVL 89 (215)
T ss_dssp SCCHHHHHHHHHHHTTCSEEEEEEEESCTTCHHHH----HHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEEEeCCcchHHHH----HHHHcCCCEEEeCccccCchhHhHHHHHHHHHhcCCCEEEE
Confidence 45776665555555554455444333 66665532 2347899999874 456677888899999988
Q ss_pred cc-eeEe
Q 017312 254 GA-DRVA 259 (373)
Q Consensus 254 GA-d~I~ 259 (373)
.+ -+|+
T Consensus 90 agy~~il 96 (215)
T 3tqr_A 90 AGFMRKL 96 (215)
T ss_dssp SSCCSCC
T ss_pred ccchhhC
Confidence 66 3444
No 33
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=64.87 E-value=18 Score=36.51 Aligned_cols=102 Identities=21% Similarity=0.255 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecC-----CCCCcchHHHHH
Q 017312 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSET-----RPFNQGSRLTAF 222 (373)
Q Consensus 148 ~a~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~Es-----rP~~qG~rlta~ 222 (373)
..++.|+.+++..|. ||++|-. |.|.-..+...+ ..++. -.+.+|+ .|........ .
T Consensus 261 ~~~~~Ia~raA~el~-----dG~~vnl----------GIGiP~~v~~~~-~~~~~-l~l~~E~G~~g~~p~~~~~~~d-~ 322 (481)
T 3k6m_A 261 NVRERIIKRAALEFE-----DGMYANL----------GIGIPLLASNFI-SPNMT-VHLQSENGILGLGPYPLQNEVD-A 322 (481)
T ss_dssp -CHHHHHHHHGGGCC-----TTEEEEE----------CTTHHHHHGGGC-CTTSC-EEEEETTTEEEECCCCCGGGCC-T
T ss_pred CHHHHHHHHHHHhcC-----CCCEEEE----------ccCHHHHHHhhh-ccCCc-EEEEECCcEeCCccCCCCCccC-c
Confidence 356789999999999 8887665 344212222222 23443 3445565 3433211111 1
Q ss_pred HHhhCCC-CeE------EEcchHHHHHHHcCCCCEEEEcceeEecCCCeecc
Q 017312 223 ELVHDRI-PAT------LIADSAAAALMKDGRVSAVIVGADRVAANGDTANK 267 (373)
Q Consensus 223 ~L~~~GI-~vt------lI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nk 267 (373)
.+...|- .++ ++..+..+.+++.+++|..|+||=-|-.+|.+.|-
T Consensus 323 ~~in~Gk~~~t~~~g~~~~~~~~~F~~~~gG~~Dv~ilga~qVD~~Gnvn~~ 374 (481)
T 3k6m_A 323 DLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANW 374 (481)
T ss_dssp TCBCTTSBBCCEEEEEEECCHHHHHHHHHTTCCSEEEECCSEEETTCCEECS
T ss_pred ccccCCCceEeccccceecCCHHHeeeecCCCeEEEEechHhccCCCCcccc
Confidence 2333442 233 23334455677889999999999999999998653
No 34
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=64.81 E-value=70 Score=31.56 Aligned_cols=89 Identities=20% Similarity=0.246 Sum_probs=52.7
Q ss_pred HHHHcCCCCEEEEcceeEecCCCeecc---------c-chHHHHHHHHhC--CCeEEEeccCccccCCCCCCCccccccC
Q 017312 241 ALMKDGRVSAVIVGADRVAANGDTANK---------I-GTYSLALCAKFH--NILFYVAAPLTSIDLTLSSGQEIVIEER 308 (373)
Q Consensus 241 ~~m~~~~vd~VivGAd~I~~nG~v~nk---------i-GT~~lA~~Ak~~--~vPvyV~a~~~k~~~~~~~~~~i~ie~r 308 (373)
+.+++...+..|.||=-|-.+|.+.|- + |....+.-|+.- |+++++. ++.. ..|. +
T Consensus 293 ~~i~~~~~~~~i~~a~evD~~G~vn~~~~g~~~~~G~GG~~D~~~gA~~~~ggk~ii~~-~~t~-----k~G~-i----- 360 (436)
T 2oas_A 293 SIIRKNPNVMAINSALQVDLTGQVCADSIGTKIYSGVGGQMDFIRGAGLSEGGRSVIAL-PSTA-----AGGR-I----- 360 (436)
T ss_dssp HHHTTSTTEEEEECCSEEETTCCEECSEETTEECSCCTTHHHHHHHHHHSTTCEEEEEC-CSEE-----TTTT-E-----
T ss_pred HHHhCCCCcEEEeccceecCCCCeeeeecCCeeecccccHHHHhhhhhhcCCCcEEEEE-eeec-----CCCC-C-----
Confidence 446445567999999888888886543 2 334556777754 6665554 4321 1121 0
Q ss_pred CcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcCCC
Q 017312 309 SAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKA 357 (373)
Q Consensus 309 ~~~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~p~ 357 (373)
+ .+.... +++ ..=.||-+.|+.||||+|+..+.
T Consensus 361 -s-kiv~~~--------~~g------~~v~t~~~~v~~vvTE~Gva~l~ 393 (436)
T 2oas_A 361 -S-RIASVL--------SPG------AGVVTTRAHVHYIVTEYGAANLK 393 (436)
T ss_dssp -E-SEESSC--------CTT------CCEEECTTTCCEEEETTEEEECT
T ss_pred -C-EEeecc--------CCC------CCcccCcccCCEEECCCEEEECC
Confidence 1 111110 001 12368899999999999999776
No 35
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=63.68 E-value=18 Score=27.57 Aligned_cols=79 Identities=9% Similarity=0.069 Sum_probs=50.7
Q ss_pred eEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH-HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCC
Q 017312 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN 281 (373)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~ 281 (373)
.+|.++|..|... +.....|.+.|..+....+..-+ ..+++...|.|++..+ ++++ -|--.+..+-+.++
T Consensus 3 ~~ilivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~--~p~~-----~g~~~~~~lr~~~~ 73 (120)
T 3f6p_A 3 KKILVVDDEKPIA--DILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIM--LPNK-----DGVEVCREVRKKYD 73 (120)
T ss_dssp CEEEEECSCHHHH--HHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETT--STTT-----HHHHHHHHHHTTCC
T ss_pred CeEEEEECCHHHH--HHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCC-----CHHHHHHHHHhcCC
Confidence 3678888777643 23355688889988876665433 3456678999988553 3332 24444455555678
Q ss_pred CeEEEeccC
Q 017312 282 ILFYVAAPL 290 (373)
Q Consensus 282 vPvyV~a~~ 290 (373)
+|+++++..
T Consensus 74 ~~ii~~t~~ 82 (120)
T 3f6p_A 74 MPIIMLTAK 82 (120)
T ss_dssp SCEEEEEES
T ss_pred CCEEEEECC
Confidence 999988653
No 36
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=62.48 E-value=57 Score=33.07 Aligned_cols=76 Identities=21% Similarity=0.315 Sum_probs=48.9
Q ss_pred CCCCEEEEcceeEecCCCeeccc-----------chHHHHHHHHhCCCeEEEeccCccccCCCCCCCccccccCCcccce
Q 017312 246 GRVSAVIVGADRVAANGDTANKI-----------GTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELL 314 (373)
Q Consensus 246 ~~vd~VivGAd~I~~nG~v~nki-----------GT~~lA~~Ak~~~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~~ev~ 314 (373)
++.|..|+||=-|-.+|.+.|-. |...++.-|+. ++++.++.+ |. .+ .+.
T Consensus 365 ~~ldv~ilga~eVD~~Gnvn~~~~~gg~~~~G~GG~~D~~~gA~~----~ii~~~~t~-------g~-------~s-kiV 425 (519)
T 2hj0_A 365 NQLDICVLSALEVDTNFNVNVMTGSDGVIRGASGGHCDTAFAAKM----SLVISPLVR-------GR-------IP-TFV 425 (519)
T ss_dssp GGCSEEEECCSEECTTCCEECSBCTTCCBCCBCTTHHHHHHHSSE----EEEECCSEE-------TT-------EE-SBC
T ss_pred ccCCeeeeeeEEEccCCceeeeeccCCeEecccccHHHHhhccCe----EEEEEcccC-------CC-------CC-eec
Confidence 78999999999999999887765 22344555552 566666542 11 01 111
Q ss_pred eccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcC-CC
Q 017312 315 CSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVT-KA 357 (373)
Q Consensus 315 ~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~-p~ 357 (373)
. .+ .+=.||-+.++.||||+|++. +.
T Consensus 426 ~------------~~-----~~vtt~~~~V~~VVTE~Gva~~l~ 452 (519)
T 2hj0_A 426 D------------KV-----NTVITPGTSVDVVVTEVGIAINPN 452 (519)
T ss_dssp S------------SC-----SSCSBCGGGCCEEECSSCEEECTT
T ss_pred c------------CC-----CCcccCCCCCCEEECCCEEEECCC
Confidence 1 11 123456789999999999998 54
No 37
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=62.46 E-value=33 Score=31.72 Aligned_cols=102 Identities=16% Similarity=0.087 Sum_probs=58.1
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHH-HHHHHhhCCCCeEEEc--c-hHHHHHHHcC
Q 017312 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRL-TAFELVHDRIPATLIA--D-SAAAALMKDG 246 (373)
Q Consensus 171 ~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rl-ta~~L~~~GI~vtlI~--D-sa~~~~m~~~ 246 (373)
+||..+-+|.+ | ..+++.+.++|. +|+++--.|.....++ ....|...|+.+...- | ..+..++++.
T Consensus 12 ~IlVtGatG~i-----G--~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~ 82 (346)
T 3i6i_A 12 RVLIAGATGFI-----G--QFVATASLDAHR--PTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEH 82 (346)
T ss_dssp CEEEECTTSHH-----H--HHHHHHHHHTTC--CEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHT
T ss_pred eEEEECCCcHH-----H--HHHHHHHHHCCC--CEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhC
Confidence 46555544433 2 234555666674 5555544332111111 1234666777654332 2 3455666333
Q ss_pred CCCEEEEcceeEecCCCeecccchHHHHHHHHhCC-CeEEEec
Q 017312 247 RVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN-ILFYVAA 288 (373)
Q Consensus 247 ~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~-vPvyV~a 288 (373)
++|.||- +.+..|-.|+..+.-+|+..| ++.+|.+
T Consensus 83 ~~d~Vi~-------~a~~~n~~~~~~l~~aa~~~g~v~~~v~S 118 (346)
T 3i6i_A 83 EIDIVVS-------TVGGESILDQIALVKAMKAVGTIKRFLPS 118 (346)
T ss_dssp TCCEEEE-------CCCGGGGGGHHHHHHHHHHHCCCSEEECS
T ss_pred CCCEEEE-------CCchhhHHHHHHHHHHHHHcCCceEEeec
Confidence 5665544 444569999999999999999 9988853
No 38
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=60.69 E-value=19 Score=32.10 Aligned_cols=71 Identities=10% Similarity=0.054 Sum_probs=44.7
Q ss_pred ccccHHHHHHHHHHCCC-eeEEEEec-CCCCCcchHHHHHHHhhCCCCeEEEc----------chHHHHHHHcCCCCEEE
Q 017312 185 GYGTALGVIRALHSEGV-LERAYCSE-TRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVI 252 (373)
Q Consensus 185 g~~tal~~l~~a~~~g~-~~~V~v~E-srP~~qG~rlta~~L~~~GI~vtlI~----------Dsa~~~~m~~~~vd~Vi 252 (373)
|.|+.+..|..+.++|. ...|..+= .+|...|.+ ...+.|||+..+. |..+...+++.++|.++
T Consensus 16 G~gsnl~all~~~~~~~l~~~I~~Visn~~~a~~l~----~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv 91 (209)
T 4ds3_A 16 GGGSNMEALIRAAQAPGFPAEIVAVFSDKAEAGGLA----KAEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIIC 91 (209)
T ss_dssp SCCHHHHHHHHHHTSTTCSEEEEEEEESCTTCTHHH----HHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEEE
T ss_pred CCcHHHHHHHHHHHcCCCCcEEEEEEECCcccHHHH----HHHHcCCCEEEeCccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 44676665555555554 34444333 367766632 2457899999875 35666777788999988
Q ss_pred Ecce-eEe
Q 017312 253 VGAD-RVA 259 (373)
Q Consensus 253 vGAd-~I~ 259 (373)
+.+= +|+
T Consensus 92 ~agy~~il 99 (209)
T 4ds3_A 92 LAGYMRLL 99 (209)
T ss_dssp ESSCCSCC
T ss_pred EeccccCc
Confidence 7663 444
No 39
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=59.52 E-value=5.1 Score=39.28 Aligned_cols=49 Identities=22% Similarity=0.125 Sum_probs=34.5
Q ss_pred HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCccc
Q 017312 241 ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (373)
Q Consensus 241 ~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~ 293 (373)
..+ ...|.||.|=-++ |.....---...+|-.||.|+|||+++|.+...
T Consensus 283 ~~l--~~ADLVITGEG~~--D~Qtl~GK~p~gVa~~A~~~~vPviaiaG~~~~ 331 (383)
T 3cwc_A 283 ACL--ADADLVITGEGRI--DSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTA 331 (383)
T ss_dssp HHH--HHCSEEEECCEES--CC----CHHHHHHHHHHHHTTCCEEEEEEECC-
T ss_pred hhh--cCCCEEEECCCCC--cCcCCCCcHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 445 6899999998666 333443334577888999999999999987653
No 40
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=59.08 E-value=33 Score=31.81 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=66.8
Q ss_pred CCcEEEEecCCCcccccccccHHHHHH---HHHH-C--CCeeEEEEe-cCC---CCCcchHHHHHHHhhCCCCeE-EEcc
Q 017312 168 SKFSVLTHCNTGSLATAGYGTALGVIR---ALHS-E--GVLERAYCS-ETR---PFNQGSRLTAFELVHDRIPAT-LIAD 236 (373)
Q Consensus 168 ~~~~ILT~~~sgslat~g~~tal~~l~---~a~~-~--g~~~~V~v~-Esr---P~~qG~rlta~~L~~~GI~vt-lI~D 236 (373)
.+.++|-- |+|-.|+...++ .|.+ . ..-+++.|. |.| |.....--.+++|.+.|+.|- |+.|
T Consensus 72 ~~~~~lpN-------Tag~~ta~eAv~~a~lare~~~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~d 144 (265)
T 1wv2_A 72 DRYTILPN-------TAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSD 144 (265)
T ss_dssp TTSEEEEE-------CTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECS
T ss_pred cCCEECCc-------CCCCCCHHHHHHHHHHHHHHcCCCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 36777742 234467776554 4445 2 234666666 444 222232224678999999988 6666
Q ss_pred hH-HHHHHHcCCCCEEEE-cceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCcc
Q 017312 237 SA-AAALMKDGRVSAVIV-GADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTS 292 (373)
Q Consensus 237 sa-~~~~m~~~~vd~Viv-GAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k 292 (373)
+- .+.-+..-+++.|+- |+. |-.+=++.| -..+..+.+..++||++-+.-.+
T Consensus 145 d~~~akrl~~~G~~aVmPlg~p-IGsG~Gi~~---~~lI~~I~e~~~vPVI~eGGI~T 198 (265)
T 1wv2_A 145 DPIIARQLAEIGCIAVMPLAGL-IGSGLGICN---PYNLRIILEEAKVPVLVDAGVGT 198 (265)
T ss_dssp CHHHHHHHHHSCCSEEEECSSS-TTCCCCCSC---HHHHHHHHHHCSSCBEEESCCCS
T ss_pred CHHHHHHHHHhCCCEEEeCCcc-CCCCCCcCC---HHHHHHHHhcCCCCEEEeCCCCC
Confidence 54 566666667777766 431 211101222 34567777778999999776554
No 41
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=58.94 E-value=21 Score=31.93 Aligned_cols=71 Identities=14% Similarity=0.108 Sum_probs=44.1
Q ss_pred ccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEc----------chHHHHHHHcCCCCEEEEc
Q 017312 185 GYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVIVG 254 (373)
Q Consensus 185 g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~----------Dsa~~~~m~~~~vd~VivG 254 (373)
|.|+.+..|..+.+++....|..+=|.|-..+.+ ...+.|||+..+. |..+...+++.++|.+++.
T Consensus 21 G~gsnl~all~~~~~~~~~eI~~Vis~~~a~~~~----~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivla 96 (215)
T 3da8_A 21 GTGSLLRSLLDAAVGDYPARVVAVGVDRECRAAE----IAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSA 96 (215)
T ss_dssp SCCHHHHHHHHHSSTTCSEEEEEEEESSCCHHHH----HHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CChHHHHHHHHHHhccCCCeEEEEEeCCchHHHH----HHHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEEc
Confidence 4567666555554333345555555555433322 2457899999885 4566777888999998886
Q ss_pred ce-eEe
Q 017312 255 AD-RVA 259 (373)
Q Consensus 255 Ad-~I~ 259 (373)
+= +|+
T Consensus 97 gy~~iL 102 (215)
T 3da8_A 97 GFMRIL 102 (215)
T ss_dssp ECCSCC
T ss_pred CchhhC
Confidence 53 454
No 42
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=58.36 E-value=20 Score=29.63 Aligned_cols=66 Identities=14% Similarity=0.049 Sum_probs=35.9
Q ss_pred HhhCCCCeEEEc--c---hHHHHHHHcCCCCEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCeEEEeccCccc
Q 017312 224 LVHDRIPATLIA--D---SAAAALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVAAPLTSI 293 (373)
Q Consensus 224 L~~~GI~vtlI~--D---sa~~~~m~~~~vd~VivGAd~I~~nG~v~n-kiGT~~lA~~Ak~~~vPvyV~a~~~k~ 293 (373)
+...|+++.... . ..+..+.++.++|.|++|+..- |.+-. -.|+-.-.+ .++-.+||+|+-+..+-
T Consensus 96 ~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~---~~~~~~~~Gsva~~v-l~~a~~pVlvv~~~~~~ 167 (175)
T 2gm3_A 96 CHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGL---GRFQKVFVGTVSAFC-VKHAECPVMTIKRNADE 167 (175)
T ss_dssp HHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCC---C--------CHHHHH-HHHCSSCEEEEECCGGG
T ss_pred HHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCC---ChhhhhhcCchHHHH-HhCCCCCEEEEcCCcCC
Confidence 445677765332 2 2233334456899999999853 22222 256655444 45567999998554433
No 43
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=58.28 E-value=37 Score=27.08 Aligned_cols=83 Identities=11% Similarity=-0.007 Sum_probs=51.8
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH-HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHH
Q 017312 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (373)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak 278 (373)
++..+|.++|..|... ......|.+.|..|....+..-+ ..+++...|.||+..+- .++ -|--.+..+-+
T Consensus 5 ~~~~~ILivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l--~~~-----~g~~~~~~lr~ 75 (154)
T 3gt7_A 5 NRAGEILIVEDSPTQA--EHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLM--PEM-----DGYALCRWLKG 75 (154)
T ss_dssp --CCEEEEECSCHHHH--HHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCC--SSS-----CHHHHHHHHHH
T ss_pred cCCCcEEEEeCCHHHH--HHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCC--CCC-----CHHHHHHHHHh
Confidence 3456888888887653 23456788889988877765433 34566789999887642 222 23333333333
Q ss_pred h---CCCeEEEeccCc
Q 017312 279 F---HNILFYVAAPLT 291 (373)
Q Consensus 279 ~---~~vPvyV~a~~~ 291 (373)
. .++|+++++...
T Consensus 76 ~~~~~~~pii~~s~~~ 91 (154)
T 3gt7_A 76 QPDLRTIPVILLTILS 91 (154)
T ss_dssp STTTTTSCEEEEECCC
T ss_pred CCCcCCCCEEEEECCC
Confidence 3 479999987543
No 44
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=58.02 E-value=1.4e+02 Score=29.46 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=17.1
Q ss_pred ecCCCCccEEEeCCCCcCCC
Q 017312 338 VTPANLITGIITEKGVVTKA 357 (373)
Q Consensus 338 vtP~~lIt~iITE~Gi~~p~ 357 (373)
.||.+.++.||||+|+....
T Consensus 383 ~~~~~~v~~vVTE~Gva~L~ 402 (434)
T 3eh7_A 383 TTLRNEVDYVVTEYGIAQLK 402 (434)
T ss_dssp EECTTTCCEEEETTEEEECT
T ss_pred eeCccceeEEEcccEEEECC
Confidence 36778999999999999775
No 45
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=57.98 E-value=25 Score=31.18 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=43.0
Q ss_pred ccccHHHHHHHHHHCCC-eeEEEEecCC-CCCcchHHHHHHHhhCCCCeEEEc----------chHHHHHHHcCCCCEEE
Q 017312 185 GYGTALGVIRALHSEGV-LERAYCSETR-PFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVI 252 (373)
Q Consensus 185 g~~tal~~l~~a~~~g~-~~~V~v~Esr-P~~qG~rlta~~L~~~GI~vtlI~----------Dsa~~~~m~~~~vd~Vi 252 (373)
|.|+.+..|..+.++|. ...|..+=|. |...|.+ ...+.|||+.++. |..+...+++.++|.++
T Consensus 9 G~Gs~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~~----~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv 84 (209)
T 1meo_A 9 GTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLD----KAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVC 84 (209)
T ss_dssp SSCTTHHHHHHHHHSTTCSCEEEEEEESSTTCHHHH----HHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCchHHHHHHHHHhcCCCCcEEEEEEeCCCChHHHH----HHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEE
Confidence 45676666655655554 3554444333 4444532 3467899998764 24556677778999988
Q ss_pred Ecce-eEe
Q 017312 253 VGAD-RVA 259 (373)
Q Consensus 253 vGAd-~I~ 259 (373)
+.+= +|+
T Consensus 85 ~a~y~~il 92 (209)
T 1meo_A 85 LAGFMRIL 92 (209)
T ss_dssp EESCCSCC
T ss_pred EcchhhhC
Confidence 7653 443
No 46
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=57.35 E-value=49 Score=25.67 Aligned_cols=82 Identities=11% Similarity=0.063 Sum_probs=51.7
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH-HHHHc-CCCCEEEEcceeEecCCCeecccchHHHHHHHHh
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKD-GRVSAVIVGADRVAANGDTANKIGTYSLALCAKF 279 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~-~~m~~-~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~ 279 (373)
..+|.++|..|... +.....|.+.|..+....+..-+ ..+++ ..+|.||+..+- ++| .-|.-.+..+-+.
T Consensus 5 ~~~ilivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l--~~~----~~g~~~~~~l~~~ 76 (140)
T 3h5i_A 5 DKKILIVEDSKFQA--KTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIEL--GEG----MDGVQTALAIQQI 76 (140)
T ss_dssp -CEEEEECSCHHHH--HHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSC--SSS----CCHHHHHHHHHHH
T ss_pred CcEEEEEeCCHHHH--HHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccC--CCC----CCHHHHHHHHHhC
Confidence 45788888877653 23355688889988877665433 33444 678999886542 222 2244444444455
Q ss_pred CCCeEEEeccCc
Q 017312 280 HNILFYVAAPLT 291 (373)
Q Consensus 280 ~~vPvyV~a~~~ 291 (373)
.++|+++++...
T Consensus 77 ~~~~ii~ls~~~ 88 (140)
T 3h5i_A 77 SELPVVFLTAHT 88 (140)
T ss_dssp CCCCEEEEESSS
T ss_pred CCCCEEEEECCC
Confidence 789999987644
No 47
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=56.89 E-value=45 Score=25.70 Aligned_cols=79 Identities=14% Similarity=0.022 Sum_probs=49.1
Q ss_pred CCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchH-HHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHH
Q 017312 199 EGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA-AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (373)
Q Consensus 199 ~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa-~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~A 277 (373)
.....+|.++|..|.... .....|.+.|+.|....+.. +-..+++...|.|| +.+. -|--.+..+-
T Consensus 15 ~~~~~~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi------~~~~-----~g~~~~~~l~ 81 (137)
T 2pln_A 15 PRGSMRVLLIEKNSVLGG--EIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM------VSDK-----NALSFVSRIK 81 (137)
T ss_dssp CTTCSEEEEECSCHHHHH--HHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE------ECST-----THHHHHHHHH
T ss_pred CCCCCeEEEEeCCHHHHH--HHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEE------EcCc-----cHHHHHHHHH
Confidence 355678888988776532 23556888899888766543 23345567889888 2222 2333333333
Q ss_pred HhC-CCeEEEeccC
Q 017312 278 KFH-NILFYVAAPL 290 (373)
Q Consensus 278 k~~-~vPvyV~a~~ 290 (373)
+.. ++|+++++..
T Consensus 82 ~~~~~~~ii~ls~~ 95 (137)
T 2pln_A 82 EKHSSIVVLVSSDN 95 (137)
T ss_dssp HHSTTSEEEEEESS
T ss_pred hcCCCccEEEEeCC
Confidence 335 8999998664
No 48
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=55.24 E-value=27 Score=31.24 Aligned_cols=71 Identities=14% Similarity=0.145 Sum_probs=44.5
Q ss_pred ccccHHHHHHHHHHCCC-eeEEEEec-CCCCCcchHHHHHHHhhCCCCeEEEc-----chHHHHHHHcCCCCEEEEcce-
Q 017312 185 GYGTALGVIRALHSEGV-LERAYCSE-TRPFNQGSRLTAFELVHDRIPATLIA-----DSAAAALMKDGRVSAVIVGAD- 256 (373)
Q Consensus 185 g~~tal~~l~~a~~~g~-~~~V~v~E-srP~~qG~rlta~~L~~~GI~vtlI~-----Dsa~~~~m~~~~vd~VivGAd- 256 (373)
|.|+.+..|..+.++|. ...|..+= .+|...|.+ ...+.|||+..+. |..+...+++.++|.+++.+=
T Consensus 17 G~gsnl~all~~~~~~~~~~~I~~Vis~~~~a~~l~----~A~~~gIp~~~~~~~~~~~~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 17 GRGSNLEALAKAFSTEESSVVISCVISNNAEARGLL----IAQSYGIPTFVVKRKPLDIEHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp SCCHHHHHHHHHTCCC-CSEEEEEEEESCTTCTHHH----HHHHTTCCEEECCBTTBCHHHHHHHHHHTTCSEEEESSCC
T ss_pred CCcHHHHHHHHHHHcCCCCcEEEEEEeCCcchHHHH----HHHHcCCCEEEeCcccCChHHHHHHHHHhCCCEEEEeCCc
Confidence 44676665555555553 34444333 367665532 2457899999864 456777788889999887664
Q ss_pred eEe
Q 017312 257 RVA 259 (373)
Q Consensus 257 ~I~ 259 (373)
+|+
T Consensus 93 ~IL 95 (215)
T 3kcq_A 93 SIL 95 (215)
T ss_dssp SCC
T ss_pred eEe
Confidence 444
No 49
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=55.22 E-value=62 Score=29.03 Aligned_cols=110 Identities=21% Similarity=0.120 Sum_probs=61.4
Q ss_pred HHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCC-----------------c
Q 017312 153 IGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFN-----------------Q 215 (373)
Q Consensus 153 I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~-----------------q 215 (373)
++..+.+.|. +.+|+..+ +|.+ -..+.+.+.+.|.. ++.+.+..+.. .
T Consensus 21 ~g~~~q~~l~------~~~VlVvG-~Gg~-------G~~va~~La~~Gv~-~i~lvD~d~v~~sNl~Rq~l~~~~diG~~ 85 (249)
T 1jw9_B 21 FDFDGQEALK------DSRVLIVG-LGGL-------GCAASQYLASAGVG-NLTLLDFDTVSLSNLQRQTLHSDATVGQP 85 (249)
T ss_dssp THHHHHHHHH------HCEEEEEC-CSHH-------HHHHHHHHHHHTCS-EEEEECCCBCCGGGGGTCTTCCGGGTTSB
T ss_pred cCHHHHHHHh------CCeEEEEe-eCHH-------HHHHHHHHHHcCCC-eEEEEcCCCcccccCCcccccChhhcCcH
Confidence 4566666776 35677665 2432 22344555555753 34444444310 1
Q ss_pred chHHHHHHHhhC--CCCeEEEc----chHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEec
Q 017312 216 GSRLTAFELVHD--RIPATLIA----DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (373)
Q Consensus 216 G~rlta~~L~~~--GI~vtlI~----Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (373)
-.+..+..|.+. ++.++.+. +..+..++ .++|.||.+.|..- --+.+.-.|+.+++|++.++
T Consensus 86 Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~--~~~DvVi~~~d~~~---------~~~~l~~~~~~~~~p~i~~~ 153 (249)
T 1jw9_B 86 KVESARDALTRINPHIAITPVNALLDDAELAALI--AEHDLVLDCTDNVA---------VRNQLNAGCFAAKVPLVSGA 153 (249)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHH--HTSSEEEECCSSHH---------HHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccCCHhHHHHHH--hCCCEEEEeCCCHH---------HHHHHHHHHHHcCCCEEEee
Confidence 112234455543 45555533 33445567 78999988776542 23677788999999998764
No 50
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=54.30 E-value=44 Score=29.79 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=44.3
Q ss_pred ccccHHHHHHHHHHCCC---eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEc----------chHHHHHHHcCCCCEE
Q 017312 185 GYGTALGVIRALHSEGV---LERAYCSETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAV 251 (373)
Q Consensus 185 g~~tal~~l~~a~~~g~---~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~----------Dsa~~~~m~~~~vd~V 251 (373)
|.|+-+..|..+.++|. .+.++++ .+|...+.+ ...+.|||+..+. |..+...+++.++|.+
T Consensus 11 g~Gsnl~ali~~~~~~~l~~eI~~Vis-n~~~a~v~~----~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dli 85 (211)
T 3p9x_A 11 GSGTNAEAIIQSQKAGQLPCEVALLIT-DKPGAKVVE----RVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFV 85 (211)
T ss_dssp TTCHHHHHHHHHHHTTCCSSEEEEEEE-SCSSSHHHH----HHHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCchHHHHHHHHHHcCCCCcEEEEEEE-CCCCcHHHH----HHHHcCCCEEEeChhhcCchhhhHHHHHHHHHhcCCCEE
Confidence 45777776666666664 2333333 456543322 2457899998775 3456667888899998
Q ss_pred EEcce-eEec
Q 017312 252 IVGAD-RVAA 260 (373)
Q Consensus 252 ivGAd-~I~~ 260 (373)
++.+= +|++
T Consensus 86 v~agy~~Il~ 95 (211)
T 3p9x_A 86 VLAGYMRLVG 95 (211)
T ss_dssp EESSCCSCCC
T ss_pred EEeCchhhcC
Confidence 87653 4543
No 51
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=53.94 E-value=1.5e+02 Score=29.41 Aligned_cols=87 Identities=18% Similarity=0.177 Sum_probs=48.9
Q ss_pred HHHcCCCCEEEEcceeEecCCCeeccc---------c-hHHHHHHHHh-CCCeEEEeccCccccCCCCCCCccccccCCc
Q 017312 242 LMKDGRVSAVIVGADRVAANGDTANKI---------G-TYSLALCAKF-HNILFYVAAPLTSIDLTLSSGQEIVIEERSA 310 (373)
Q Consensus 242 ~m~~~~vd~VivGAd~I~~nG~v~nki---------G-T~~lA~~Ak~-~~vPvyV~a~~~k~~~~~~~~~~i~ie~r~~ 310 (373)
++++......|.||=-|-.+|.+.|-. | ..-.+.-|+. .|=-.+++.|+.. ..|. +
T Consensus 325 ~i~~~~~~i~in~a~evd~~G~v~~~~~~~~~~~G~GG~~Df~~gA~~s~ggk~ii~~~s~~-----k~G~-i------- 391 (455)
T 3qli_A 325 IIAQNDNVVSINATLQIDLTGACNSEHMLGHQYSASGGQLDFVRGAYASKGGRSIIATPSTA-----AKGT-V------- 391 (455)
T ss_dssp HHTTSTTEEEEEECSEEETTSCEECCCSTTCCCGGGSSHHHHHHHHHHSTTCEEEEECCSEE-----TTTT-E-------
T ss_pred HHhCCCCcEEeeeeEEEecCCCeeeeccCCeeecCcChhHHHHHHHhhcCCCcEEEEEeCcc-----CCCC-C-------
Confidence 553334556899998888888776543 2 2334555554 3444555556532 1121 0
Q ss_pred ccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcCCC
Q 017312 311 KELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKA 357 (373)
Q Consensus 311 ~ev~~~~~~~g~~~~~~~~~v~np~fDvtP~~lIt~iITE~Gi~~p~ 357 (373)
..+.. .+. .-=.||.+.++.||||+|+..-.
T Consensus 392 s~Iv~------------~~~----~~vtt~~~~v~~vvTE~Gva~l~ 422 (455)
T 3qli_A 392 SRIIP------------RID----GPVTTPRIDTHYIVTEFGAVNLK 422 (455)
T ss_dssp ESEES------------CCS----SSCSBCTTTCCEEEETTEEEECT
T ss_pred CeEec------------cCC----CCcccCcccccEEEeccEEEECC
Confidence 01111 111 01146999999999999998754
No 52
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=53.93 E-value=31 Score=32.54 Aligned_cols=84 Identities=13% Similarity=-0.034 Sum_probs=50.6
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcc--------------------------------
Q 017312 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD-------------------------------- 236 (373)
Q Consensus 189 al~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~D-------------------------------- 236 (373)
.+.+.+.+.++|...+++..+ . . ...+.+.|+++.-++.
T Consensus 37 ~l~La~~L~~~Gh~V~v~~~~---~-----~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (415)
T 3rsc_A 37 TLTVVTELVRRGHRVSYVTAG---G-----F-AEPVRAAGATVVPYQSEIIDADAAEVFGSDDLGVRPHLMYLRENVSVL 107 (415)
T ss_dssp GHHHHHHHHHTTCEEEEEECG---G-----G-HHHHHHTTCEEEECCCSTTTCCHHHHHHSSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeCH---H-----H-HHHHHhcCCEEEeccccccccccchhhccccHHHHHHHHHHHHHHHHH
Confidence 355567777788877776622 1 1 2245677888877663
Q ss_pred hHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCccc
Q 017312 237 SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (373)
Q Consensus 237 sa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~ 293 (373)
..+..++++.+.|.|++ | + .-.+...++|+..|||++...+.+-+
T Consensus 108 ~~l~~~l~~~~PDlVi~--d-----~-----~~~~~~~~aA~~~giP~v~~~~~~~~ 152 (415)
T 3rsc_A 108 RATAEALDGDVPDLVLY--D-----D-----FPFIAGQLLAARWRRPAVRLSAAFAS 152 (415)
T ss_dssp HHHHHHHSSSCCSEEEE--E-----S-----TTHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred HHHHHHHhccCCCEEEE--C-----c-----hhhhHHHHHHHHhCCCEEEEEecccc
Confidence 11223344567787763 2 1 12233467789999999988755543
No 53
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=53.93 E-value=19 Score=30.97 Aligned_cols=51 Identities=12% Similarity=0.052 Sum_probs=35.0
Q ss_pred HHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccC
Q 017312 238 AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 238 a~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
.+...+ .++|.||--|-....+---+|-.|+..+.-+|+..+++-+|...+
T Consensus 56 ~~~~~~--~~~d~vi~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 106 (219)
T 3dqp_A 56 EMAKQL--HGMDAIINVSGSGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLST 106 (219)
T ss_dssp HHHTTT--TTCSEEEECCCCTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHH--cCCCEEEECCcCCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECc
Confidence 445556 678888876644332323468999999999999999876655443
No 54
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=53.83 E-value=25 Score=32.87 Aligned_cols=36 Identities=14% Similarity=0.029 Sum_probs=23.2
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEE
Q 017312 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI 234 (373)
Q Consensus 190 l~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI 234 (373)
+.+.+.+.++|...+|+..+ .. ...+...|+++..+
T Consensus 19 ~~la~~L~~~GheV~v~~~~--------~~-~~~~~~~g~~~~~~ 54 (391)
T 3tsa_A 19 VPLCWALQASGHEVLIAAPP--------EL-QATAHGAGLTTAGI 54 (391)
T ss_dssp HHHHHHHHHTTCEEEEEECH--------HH-HHHHHHBTCEEEEC
T ss_pred HHHHHHHHHCCCEEEEecCh--------hh-HHHHHhCCCceeee
Confidence 44567777889887776531 12 23466788887766
No 55
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=53.67 E-value=32 Score=31.99 Aligned_cols=83 Identities=17% Similarity=0.038 Sum_probs=51.1
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcch--------------------------------
Q 017312 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS-------------------------------- 237 (373)
Q Consensus 190 l~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Ds-------------------------------- 237 (373)
+.+.+.+.++|...+|++.+ .. ...+.+.|+++.-+...
T Consensus 22 ~~La~~L~~~GheV~v~~~~--------~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (402)
T 3ia7_A 22 LGLVSELARRGHRITYVTTP--------LF-ADEVKAAGAEVVLYKSEFDTFHVPEVVKQEDAETQLHLVYVRENVAILR 92 (402)
T ss_dssp HHHHHHHHHTTCEEEEEECH--------HH-HHHHHHTTCEEEECCCGGGTSSSSSSSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEcCH--------HH-HHHHHHcCCEEEecccccccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 44556677788877777632 22 23466789888877631
Q ss_pred HHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCccc
Q 017312 238 AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (373)
Q Consensus 238 a~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~ 293 (373)
.+..++++.+.|.|+. |. ...+...++|+..|+|++...+.+-.
T Consensus 93 ~l~~~l~~~~pD~Vi~--d~----------~~~~~~~~aA~~~giP~v~~~~~~~~ 136 (402)
T 3ia7_A 93 AAEEALGDNPPDLVVY--DV----------FPFIAGRLLAARWDRPAVRLTGGFAA 136 (402)
T ss_dssp HHHHHHTTCCCSEEEE--ES----------TTHHHHHHHHHHHTCCEEEEESSCCC
T ss_pred HHHHHHhccCCCEEEE--Cc----------hHHHHHHHHHHhhCCCEEEEeccccc
Confidence 1223344567887764 21 12233467789999999988755543
No 56
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=53.49 E-value=37 Score=26.71 Aligned_cols=61 Identities=13% Similarity=0.204 Sum_probs=36.8
Q ss_pred HHhhCCCCe---EE-Ec----chHHHHHHHcCCCCEEEEcceeEecCCCeecc-cchHHHHHHHHhCCCeEEEe
Q 017312 223 ELVHDRIPA---TL-IA----DSAAAALMKDGRVSAVIVGADRVAANGDTANK-IGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 223 ~L~~~GI~v---tl-I~----Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nk-iGT~~lA~~Ak~~~vPvyV~ 287 (373)
.+.+.|+++ +. +. ...+....++.++|.+++|+..- |.+-.. .|+..-. +.++-++||+|+
T Consensus 78 ~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~---~~~~~~~~Gs~~~~-vl~~~~~pVlvV 147 (147)
T 3hgm_A 78 RATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGT---NGDKSLLLGSVAQR-VAGSAHCPVLVV 147 (147)
T ss_dssp HHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCT---TCCSCCCCCHHHHH-HHHHCSSCEEEC
T ss_pred HHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCC---ccccceeeccHHHH-HHhhCCCCEEEC
Confidence 355678877 43 22 12333444466999999999752 333332 4665444 455667999985
No 57
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=53.22 E-value=50 Score=26.05 Aligned_cols=82 Identities=13% Similarity=-0.066 Sum_probs=51.0
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchH-HHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHh
Q 017312 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA-AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF 279 (373)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa-~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~ 279 (373)
+..+|.++|..|... +.....|...|+.+....+.. +-..+++..+|.||+..+- .+ .-|--.+..+.+.
T Consensus 6 ~~~~iLivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~-----~~g~~~~~~l~~~ 76 (154)
T 2rjn_A 6 KNYTVMLVDDEQPIL--NSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRM--PE-----MGGEVFLEQVAKS 76 (154)
T ss_dssp SCCEEEEECSCHHHH--HHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSC--SS-----SCHHHHHHHHHHH
T ss_pred CCCeEEEEcCCHHHH--HHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCC--CC-----CCHHHHHHHHHHh
Confidence 456788888877653 233556888899888666543 3334556678999987642 22 1233333334333
Q ss_pred -CCCeEEEeccCc
Q 017312 280 -HNILFYVAAPLT 291 (373)
Q Consensus 280 -~~vPvyV~a~~~ 291 (373)
.++|+++++...
T Consensus 77 ~~~~~ii~ls~~~ 89 (154)
T 2rjn_A 77 YPDIERVVISGYA 89 (154)
T ss_dssp CTTSEEEEEECGG
T ss_pred CCCCcEEEEecCC
Confidence 479999987644
No 58
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=52.33 E-value=43 Score=28.96 Aligned_cols=106 Identities=14% Similarity=0.110 Sum_probs=57.4
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcch--HHHHHHHcC
Q 017312 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS--AAAALMKDG 246 (373)
Q Consensus 169 ~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Ds--a~~~~m~~~ 246 (373)
+.+||.-+-||.+ | ..+.+.+.++|. +|+++.-+|. ++ .+|.+.|+...+..|- .+...+ +
T Consensus 21 ~~~ilVtGatG~i-----G--~~l~~~L~~~G~--~V~~~~R~~~----~~--~~~~~~~~~~~~~~Dl~~~~~~~~--~ 83 (236)
T 3e8x_A 21 GMRVLVVGANGKV-----A--RYLLSELKNKGH--EPVAMVRNEE----QG--PELRERGASDIVVANLEEDFSHAF--A 83 (236)
T ss_dssp CCEEEEETTTSHH-----H--HHHHHHHHHTTC--EEEEEESSGG----GH--HHHHHTTCSEEEECCTTSCCGGGG--T
T ss_pred CCeEEEECCCChH-----H--HHHHHHHHhCCC--eEEEEECChH----HH--HHHHhCCCceEEEcccHHHHHHHH--c
Confidence 5566665544432 2 234455666675 5666654332 22 3466667622233442 233344 5
Q ss_pred CCCEEEEcceeEecCC----CeecccchHHHHHHHHhCCCeEEEeccCc
Q 017312 247 RVSAVIVGADRVAANG----DTANKIGTYSLALCAKFHNILFYVAAPLT 291 (373)
Q Consensus 247 ~vd~VivGAd~I~~nG----~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (373)
++|.||--|-....+. --+|-.||..+.-+|+..+++-+|...++
T Consensus 84 ~~D~vi~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~ 132 (236)
T 3e8x_A 84 SIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSV 132 (236)
T ss_dssp TCSEEEECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCT
T ss_pred CCCEEEECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 6776665543211000 01378899999999999998777665553
No 59
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=51.81 E-value=47 Score=25.25 Aligned_cols=82 Identities=15% Similarity=-0.014 Sum_probs=49.8
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH-HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHH-
Q 017312 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK- 278 (373)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak- 278 (373)
...+|.++|..|... +.....|.+.|..+....+..-+ ..+++.+.|.||+..+-- ++ -|--.+..+-+
T Consensus 6 ~~~~ilivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~--~~-----~g~~~~~~l~~~ 76 (130)
T 3eod_A 6 VGKQILIVEDEQVFR--SLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP--RM-----NGLKLLEHIRNR 76 (130)
T ss_dssp TTCEEEEECSCHHHH--HHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC------------CHHHHHHHHHT
T ss_pred CCCeEEEEeCCHHHH--HHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCC--CC-----CHHHHHHHHHhc
Confidence 345788888877653 23355688889988877665433 345667899999876532 21 23333333333
Q ss_pred hCCCeEEEeccCc
Q 017312 279 FHNILFYVAAPLT 291 (373)
Q Consensus 279 ~~~vPvyV~a~~~ 291 (373)
..++|+++++...
T Consensus 77 ~~~~~ii~~t~~~ 89 (130)
T 3eod_A 77 GDQTPVLVISATE 89 (130)
T ss_dssp TCCCCEEEEECCC
T ss_pred CCCCCEEEEEcCC
Confidence 3479999986543
No 60
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=51.63 E-value=32 Score=31.62 Aligned_cols=113 Identities=12% Similarity=0.113 Sum_probs=62.7
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcch-HHHHHHHhhCCCCeEEE-c---c-hHHHH
Q 017312 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGS-RLTAFELVHDRIPATLI-A---D-SAAAA 241 (373)
Q Consensus 168 ~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~-rlta~~L~~~GI~vtlI-~---D-sa~~~ 241 (373)
.+.+||.-+-+|.+ | ..+++.+.++|...+|++...++..... ++ . .+... -.++++ . | ..+..
T Consensus 23 ~~~~vlVtGatG~i-----G--~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l-~-~~~~~-~~~~~~~~Dl~d~~~~~~ 92 (346)
T 4egb_A 23 NAMNILVTGGAGFI-----G--SNFVHYMLQSYETYKIINFDALTYSGNLNNV-K-SIQDH-PNYYFVKGEIQNGELLEH 92 (346)
T ss_dssp -CEEEEEETTTSHH-----H--HHHHHHHHHHCTTEEEEEEECCCTTCCGGGG-T-TTTTC-TTEEEEECCTTCHHHHHH
T ss_pred CCCeEEEECCccHH-----H--HHHHHHHHhhCCCcEEEEEeccccccchhhh-h-hhccC-CCeEEEEcCCCCHHHHHH
Confidence 35667766655433 2 2345666667878899888765533221 11 1 12111 123333 2 2 34556
Q ss_pred HHHcCCCCEEEEcceeEecCC--------CeecccchHHHHHHHHhCCCeEEEeccC
Q 017312 242 LMKDGRVSAVIVGADRVAANG--------DTANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 242 ~m~~~~vd~VivGAd~I~~nG--------~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
+++..++|.||--|-....+. --.|-.||..+.-+|+.++++-+|.+.+
T Consensus 93 ~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS 149 (346)
T 4egb_A 93 VIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVST 149 (346)
T ss_dssp HHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEE
T ss_pred HHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 664445999987664332111 1357889999999999999985554433
No 61
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=51.51 E-value=32 Score=28.13 Aligned_cols=61 Identities=8% Similarity=0.056 Sum_probs=36.9
Q ss_pred HhhCCCCeEE---Ecc----hHHHHHHHcCCCCEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCeEEEec
Q 017312 224 LVHDRIPATL---IAD----SAAAALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVAA 288 (373)
Q Consensus 224 L~~~GI~vtl---I~D----sa~~~~m~~~~vd~VivGAd~I~~nG~v~n-kiGT~~lA~~Ak~~~vPvyV~a 288 (373)
+...|+++.. +.. ..+..+.++.++|.|++|+..- |.+-. -.|+..-- +.++-++||+|+-
T Consensus 87 ~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~---~~~~~~~~Gsv~~~-vl~~~~~PVlvv~ 155 (170)
T 2dum_A 87 VKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGK---LSLSHEFLGSTVMR-VLRKTKKPVLIIK 155 (170)
T ss_dssp HHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCC---CC--TTCCCHHHHH-HHHHCSSCEEEEC
T ss_pred HHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCC---CccccceechHHHH-HHHhCCCCEEEEc
Confidence 4456888765 221 2344445567999999999853 22322 24654444 4556789999973
No 62
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=49.64 E-value=51 Score=25.54 Aligned_cols=81 Identities=7% Similarity=-0.053 Sum_probs=49.0
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHH-HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhC
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFH 280 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~-~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~ 280 (373)
..+|.++|..|... ......|...|+.+....+..- -..+++...|.||+..+ +++. -|--.+..+-+..
T Consensus 4 ~~~Ilivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~-----~g~~l~~~l~~~~ 74 (136)
T 2qzj_A 4 QTKILIIDGDKDNC--QKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEII--LSDG-----DGWTLCKKIRNVT 74 (136)
T ss_dssp CCEEEEECSCHHHH--HHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESE--ETTE-----EHHHHHHHHHTTC
T ss_pred CCeEEEEcCCHHHH--HHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCC-----CHHHHHHHHccCC
Confidence 45788888877543 2235567788998876665432 23445578999998654 3321 2333333343344
Q ss_pred CCeEEEeccCc
Q 017312 281 NILFYVAAPLT 291 (373)
Q Consensus 281 ~vPvyV~a~~~ 291 (373)
.+|+++++...
T Consensus 75 ~~~ii~ls~~~ 85 (136)
T 2qzj_A 75 TCPIVYMTYIN 85 (136)
T ss_dssp CCCEEEEESCC
T ss_pred CCCEEEEEcCC
Confidence 89999886543
No 63
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=49.22 E-value=36 Score=26.98 Aligned_cols=81 Identities=9% Similarity=-0.008 Sum_probs=49.0
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH-HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHh-
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF- 279 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~- 279 (373)
..+|.++|..|... ......|.+.|+.|....+..-+ ..+++...|.||+..+- .+ .-|.-.+..+-+.
T Consensus 3 ~~~ILivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l--~~-----~~g~~~~~~l~~~~ 73 (155)
T 1qkk_A 3 APSVFLIDDDRDLR--KAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRM--PG-----MDGLALFRKILALD 73 (155)
T ss_dssp -CEEEEECSCHHHH--HHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCC--SS-----SCHHHHHHHHHHHC
T ss_pred CCEEEEEeCCHHHH--HHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCC--CC-----CCHHHHHHHHHhhC
Confidence 46788888877653 23355688889988876664433 33445678988887642 22 1233333333333
Q ss_pred CCCeEEEeccCc
Q 017312 280 HNILFYVAAPLT 291 (373)
Q Consensus 280 ~~vPvyV~a~~~ 291 (373)
.++|+++++...
T Consensus 74 ~~~pii~ls~~~ 85 (155)
T 1qkk_A 74 PDLPMILVTGHG 85 (155)
T ss_dssp TTSCEEEEECGG
T ss_pred CCCCEEEEECCC
Confidence 479999987643
No 64
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=49.03 E-value=32 Score=31.18 Aligned_cols=99 Identities=12% Similarity=0.031 Sum_probs=58.3
Q ss_pred HHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCC-CeeEEEEecCC---------------------CC
Q 017312 156 YGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEG-VLERAYCSETR---------------------PF 213 (373)
Q Consensus 156 ~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g-~~~~V~v~Esr---------------------P~ 213 (373)
.++++|+ ||++|..+++.+ .++...++....+++ ++++++-.-+- ++
T Consensus 13 eAv~~Ik-----dG~tV~~gGf~~------~g~P~~li~aL~~~~~kdLtli~~~~g~~~~g~~~L~~~G~v~r~i~s~~ 81 (235)
T 3rrl_A 13 KALSALK-----DGDTILVGGFGL------CGIPEYAIDYIYKKGIKDLIVVSNNCGVDDFGLGILLEKKQIKKIIASYV 81 (235)
T ss_dssp HHHTTCC-----TTCEEEECCBTT------BTCCHHHHHHHHHHTCCSEEEECSCCCCSSSGGGGGGTTTCEEEEEESCC
T ss_pred HHHhhCC-----CCCEEEECCcCc------cCCHHHHHHHHHhcCCCcEEEEEcCCCCCCcCHHHHHhCCCeeEEEeccc
Confidence 3456677 999999986532 244455666555544 46777754221 11
Q ss_pred CcchHHHHHHHhhCCCCeEEEcchHHHHHHHcC-------------------------------------CCCEEEEcce
Q 017312 214 NQGSRLTAFELVHDRIPATLIADSAAAALMKDG-------------------------------------RVSAVIVGAD 256 (373)
Q Consensus 214 ~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~-------------------------------------~vd~VivGAd 256 (373)
....+ +.+...+-.|.+..++-+.++..++.. ++|..|+.|.
T Consensus 82 g~~~~-~~~~~~~G~ie~~~~pqg~la~~~rag~~G~P~~~t~~glgT~v~~gk~~~~~~G~~~l~~~a~~~DvAli~a~ 160 (235)
T 3rrl_A 82 GENKI-FESQMLNGEIEVVLTPQGTLAENLHAGGAGIPAYYTPTGVGTLIAQGKESREFNGKEYILERAITGDYGLIKAY 160 (235)
T ss_dssp CSCHH-HHHHHHHTSSEEEECCHHHHHHHHHHHHHTCCEEEESTTTTSGGGTTCCEEEETTEEEEEEECCCEEEEEEECS
T ss_pred cCCHH-HHHHHHcCCeEEEECCHHHHHHHHHHHhCCCCEEEeccccCcccccCceEEeeCCEEEEEEcCCCCeEEEEEee
Confidence 11111 122222333566666655555554432 8899999999
Q ss_pred eEecCCCeec
Q 017312 257 RVAANGDTAN 266 (373)
Q Consensus 257 ~I~~nG~v~n 266 (373)
..-.+|.+.=
T Consensus 161 ~aD~~GN~~~ 170 (235)
T 3rrl_A 161 KSDTLGNLVF 170 (235)
T ss_dssp EEETTCCEEC
T ss_pred ecCCCceEEE
Confidence 9999998753
No 65
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=48.16 E-value=11 Score=34.74 Aligned_cols=81 Identities=11% Similarity=0.099 Sum_probs=53.5
Q ss_pred EEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH---HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHh-
Q 017312 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA---ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF- 279 (373)
Q Consensus 204 ~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~---~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~- 279 (373)
+|.++|+..+.+|.......|.+.|++|+++....+. .-+ .+.|.||++ | +.. +...-.++..+.+.
T Consensus 6 ~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L--~~yDvIIl~-d-~~~-----~~l~~~~~~~L~~yV 76 (259)
T 3rht_A 6 RVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELL--AKQDLVILS-D-YPA-----ERMTAQAIDQLVTMV 76 (259)
T ss_dssp CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHH--HTCSEEEEE-S-CCG-----GGBCHHHHHHHHHHH
T ss_pred eEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHH--hcCCEEEEc-C-Ccc-----ccCCHHHHHHHHHHH
Confidence 5666687777777776676799999999999977662 345 799999886 3 111 23333444444333
Q ss_pred -CCCeEEEeccCccc
Q 017312 280 -HNILFYVAAPLTSI 293 (373)
Q Consensus 280 -~~vPvyV~a~~~k~ 293 (373)
.|-=++++.....+
T Consensus 77 ~~GGgLi~~gG~~s~ 91 (259)
T 3rht_A 77 KAGCGLVMLGGWESY 91 (259)
T ss_dssp HTTCEEEEECSTTSS
T ss_pred HhCCeEEEecCcccc
Confidence 47778888664444
No 66
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=48.05 E-value=72 Score=23.71 Aligned_cols=79 Identities=10% Similarity=0.124 Sum_probs=47.4
Q ss_pred eEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHH-HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCC
Q 017312 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN 281 (373)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~-~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~ 281 (373)
.+|.++|..|.... .....|...|..+....+..- -..+++...|.|++..+ +++. -|--.+..+-+...
T Consensus 3 ~~ilivdd~~~~~~--~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--l~~~-----~g~~~~~~l~~~~~ 73 (122)
T 1zgz_A 3 HHIVIVEDEPVTQA--RLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDIN--LPDE-----NGLMLTRALRERST 73 (122)
T ss_dssp CEEEEECSSHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHTTCC
T ss_pred cEEEEEECCHHHHH--HHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCC--CCCC-----ChHHHHHHHHhcCC
Confidence 36778887775432 234467788988876665433 23445567999988654 2322 23333334444567
Q ss_pred CeEEEeccC
Q 017312 282 ILFYVAAPL 290 (373)
Q Consensus 282 vPvyV~a~~ 290 (373)
+|+++++..
T Consensus 74 ~~ii~~s~~ 82 (122)
T 1zgz_A 74 VGIILVTGR 82 (122)
T ss_dssp CEEEEEESS
T ss_pred CCEEEEECC
Confidence 999887654
No 67
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=47.70 E-value=33 Score=32.25 Aligned_cols=96 Identities=17% Similarity=0.127 Sum_probs=57.1
Q ss_pred CcEEEEecCCCccccccc-ccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcch----------
Q 017312 169 KFSVLTHCNTGSLATAGY-GTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS---------- 237 (373)
Q Consensus 169 ~~~ILT~~~sgslat~g~-~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Ds---------- 237 (373)
..+||-.+..+ .|+ ...+.+.+.+.++|...+|++.+ . + ...+...|+++.-+...
T Consensus 15 ~MrIl~~~~~~----~gh~~~~~~La~~L~~~GheV~v~~~~---~-----~-~~~~~~~G~~~~~~~~~~~~~~~~~~~ 81 (398)
T 4fzr_A 15 HMRILVIAGCS----EGFVMPLVPLSWALRAAGHEVLVAASE---N-----M-GPTVTGAGLPFAPTCPSLDMPEVLSWD 81 (398)
T ss_dssp CCEEEEECCSS----HHHHGGGHHHHHHHHHTTCEEEEEEEG---G-----G-HHHHHHTTCCEEEEESSCCHHHHHSBC
T ss_pred ceEEEEEcCCC----cchHHHHHHHHHHHHHCCCEEEEEcCH---H-----H-HHHHHhCCCeeEecCCccchHhhhhhh
Confidence 36777665431 122 12345667777889888887642 1 1 23466789988877630
Q ss_pred --------------------------------HHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEE
Q 017312 238 --------------------------------AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFY 285 (373)
Q Consensus 238 --------------------------------a~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvy 285 (373)
.+..++++.+.|.|+ +|. .++..+++|+..|+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv--~d~-----------~~~~~~~~a~~~giP~v 148 (398)
T 4fzr_A 82 REGNRTTMPREEKPLLEHIGRGYGRLVLRMRDEALALAERWKPDLVL--TET-----------YSLTGPLVAATLGIPWI 148 (398)
T ss_dssp TTSCBCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEE--EET-----------TCTHHHHHHHHHTCCEE
T ss_pred ccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEE--ECc-----------cccHHHHHHHhhCCCEE
Confidence 122234455788775 221 23335678899999998
Q ss_pred EeccC
Q 017312 286 VAAPL 290 (373)
Q Consensus 286 V~a~~ 290 (373)
.....
T Consensus 149 ~~~~~ 153 (398)
T 4fzr_A 149 EQSIR 153 (398)
T ss_dssp EECCS
T ss_pred EeccC
Confidence 87644
No 68
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=47.40 E-value=77 Score=24.47 Aligned_cols=81 Identities=7% Similarity=-0.069 Sum_probs=50.1
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH-HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHH--
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-- 278 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak-- 278 (373)
..+|.++|..|... +.....|.+.|..|....+..-+ ..+++...|.||+..+ +++. -|.-.+..+-+
T Consensus 4 ~~~iLivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~-----~g~~~~~~lr~~~ 74 (136)
T 3t6k_A 4 PHTLLIVDDDDTVA--EMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVL--LPGI-----DGYTLCKRVRQHP 74 (136)
T ss_dssp CCEEEEECSCHHHH--HHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHHSG
T ss_pred CCEEEEEeCCHHHH--HHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCC-----CHHHHHHHHHcCC
Confidence 45788888877653 23355688889988877665433 3355678999988543 3332 24333333333
Q ss_pred -hCCCeEEEeccCc
Q 017312 279 -FHNILFYVAAPLT 291 (373)
Q Consensus 279 -~~~vPvyV~a~~~ 291 (373)
..++|+++++...
T Consensus 75 ~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 75 LTKTLPILMLTAQG 88 (136)
T ss_dssp GGTTCCEEEEECTT
T ss_pred CcCCccEEEEecCC
Confidence 2379999987643
No 69
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=47.37 E-value=24 Score=33.65 Aligned_cols=17 Identities=12% Similarity=-0.088 Sum_probs=13.6
Q ss_pred HHHHHhCCCeEEEeccC
Q 017312 274 ALCAKFHNILFYVAAPL 290 (373)
Q Consensus 274 A~~Ak~~~vPvyV~a~~ 290 (373)
+++|+..|||++.+..+
T Consensus 109 ~~~A~~lgiP~v~~~~~ 125 (404)
T 3h4t_A 109 RSMAEKLGIPYRYTVLS 125 (404)
T ss_dssp HHHHHHHTCCEEEEESS
T ss_pred hhHHhhcCCCEEEEEcC
Confidence 67899999999976543
No 70
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=47.26 E-value=61 Score=24.91 Aligned_cols=81 Identities=14% Similarity=0.130 Sum_probs=51.8
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHH-HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHH--
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-- 278 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~-~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak-- 278 (373)
..+|.++|..|... +.....|.+.|+.+....+..- -..+++...|.||+..+- .++ -|.-.+..+-+
T Consensus 6 ~~~iLivdd~~~~~--~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~~-----~g~~~~~~l~~~~ 76 (140)
T 3grc_A 6 RPRILICEDDPDIA--RLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNL--PDQ-----DGVSLIRALRRDS 76 (140)
T ss_dssp CSEEEEECSCHHHH--HHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCC--SSS-----CHHHHHHHHHTSG
T ss_pred CCCEEEEcCCHHHH--HHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCC--CCC-----CHHHHHHHHHhCc
Confidence 46888888877653 2335568888998877776543 334567889999886642 222 23333333332
Q ss_pred -hCCCeEEEeccCc
Q 017312 279 -FHNILFYVAAPLT 291 (373)
Q Consensus 279 -~~~vPvyV~a~~~ 291 (373)
..++|+++++...
T Consensus 77 ~~~~~~ii~~s~~~ 90 (140)
T 3grc_A 77 RTRDLAIVVVSANA 90 (140)
T ss_dssp GGTTCEEEEECTTH
T ss_pred ccCCCCEEEEecCC
Confidence 3589999987654
No 71
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=46.14 E-value=52 Score=25.43 Aligned_cols=80 Identities=8% Similarity=0.013 Sum_probs=49.0
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchH-HHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHh-
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA-AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF- 279 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa-~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~- 279 (373)
..+|.++|..|... +.....|.+.|+.|....+.. +-..+++...|.||+.. ..+. -|.-.+..+-+.
T Consensus 4 ~~~iLivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~---~~~~-----~g~~~~~~l~~~~ 73 (142)
T 2qxy_A 4 TPTVMVVDESRITF--LAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV---FEGE-----ESLNLIRRIREEF 73 (142)
T ss_dssp CCEEEEECSCHHHH--HHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC---TTTH-----HHHHHHHHHHHHC
T ss_pred CCeEEEEeCCHHHH--HHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC---CCCC-----cHHHHHHHHHHHC
Confidence 45788888776543 233556888899888666544 33445567889998875 3321 233333333333
Q ss_pred CCCeEEEeccCc
Q 017312 280 HNILFYVAAPLT 291 (373)
Q Consensus 280 ~~vPvyV~a~~~ 291 (373)
.++|+++++...
T Consensus 74 ~~~pii~ls~~~ 85 (142)
T 2qxy_A 74 PDTKVAVLSAYV 85 (142)
T ss_dssp TTCEEEEEESCC
T ss_pred CCCCEEEEECCC
Confidence 469999987654
No 72
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=45.85 E-value=64 Score=23.81 Aligned_cols=78 Identities=6% Similarity=0.022 Sum_probs=47.1
Q ss_pred EEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH-HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCC
Q 017312 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNI 282 (373)
Q Consensus 204 ~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~v 282 (373)
+|.++|..|... ......|...|..+....+..-+ ..+++...|.|++..+- +++ -|--.+..+-+..++
T Consensus 3 ~ilivdd~~~~~--~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l--~~~-----~g~~~~~~l~~~~~~ 73 (120)
T 2a9o_A 3 KILIVDDEKPIS--DIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLML--PEI-----DGLEVAKTIRKTSSV 73 (120)
T ss_dssp EEEEECSCHHHH--HHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSSC--SSS-----CHHHHHHHHHHHCCC
T ss_pred eEEEEcCCHHHH--HHHHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEEeccC--CCC-----CHHHHHHHHHhCCCC
Confidence 577777776542 22345677889888766654332 33445679999886542 322 233333444455789
Q ss_pred eEEEeccC
Q 017312 283 LFYVAAPL 290 (373)
Q Consensus 283 PvyV~a~~ 290 (373)
|+++++..
T Consensus 74 ~ii~~s~~ 81 (120)
T 2a9o_A 74 PILMLSAK 81 (120)
T ss_dssp CEEEEESC
T ss_pred CEEEEecC
Confidence 99987653
No 73
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=45.32 E-value=87 Score=23.25 Aligned_cols=79 Identities=9% Similarity=0.016 Sum_probs=47.4
Q ss_pred eEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHH-HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCC
Q 017312 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN 281 (373)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~-~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~ 281 (373)
.+|.++|..|... ......|.+.|..+....+..- -..+++...|.|++..+- ++. -|--.+..+-+..+
T Consensus 4 ~~ilivdd~~~~~--~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l--~~~-----~g~~~~~~l~~~~~ 74 (123)
T 1xhf_A 4 PHILIVEDELVTR--NTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINL--PGK-----NGLLLARELREQAN 74 (123)
T ss_dssp CEEEEECSCHHHH--HHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSSC--SSS-----CHHHHHHHHHHHCC
T ss_pred ceEEEEeCCHHHH--HHHHHHHhhCCcEEEEeCCHHHHHHHHhcCCCCEEEEcCCC--CCC-----CHHHHHHHHHhCCC
Confidence 3678888776543 2234567778888876665432 234456789999886542 222 23333334433468
Q ss_pred CeEEEeccC
Q 017312 282 ILFYVAAPL 290 (373)
Q Consensus 282 vPvyV~a~~ 290 (373)
+|+++++..
T Consensus 75 ~~ii~~s~~ 83 (123)
T 1xhf_A 75 VALMFLTGR 83 (123)
T ss_dssp CEEEEEESC
T ss_pred CcEEEEECC
Confidence 999987653
No 74
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=44.98 E-value=63 Score=24.32 Aligned_cols=81 Identities=12% Similarity=0.030 Sum_probs=50.4
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHH-HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHH--
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-- 278 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~-~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak-- 278 (373)
..+|.++|..|... +.....|.+.|..|....+..- -..+++..+|.||+..+- .+ .-|--.+..+-+
T Consensus 3 ~~~ilivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l--~~-----~~g~~~~~~l~~~~ 73 (127)
T 3i42_A 3 LQQALIVEDYQAAA--ETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNL--PD-----TSGLALVKQLRALP 73 (127)
T ss_dssp CEEEEEECSCHHHH--HHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBC--SS-----SBHHHHHHHHHHSC
T ss_pred cceEEEEcCCHHHH--HHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCC--CC-----CCHHHHHHHHHhhh
Confidence 35788888877653 2335568888998887776543 234566789999987643 22 123333333333
Q ss_pred -hCCCeEEEeccCc
Q 017312 279 -FHNILFYVAAPLT 291 (373)
Q Consensus 279 -~~~vPvyV~a~~~ 291 (373)
..++|+++++...
T Consensus 74 ~~~~~~ii~~s~~~ 87 (127)
T 3i42_A 74 MEKTSKFVAVSGFA 87 (127)
T ss_dssp CSSCCEEEEEECC-
T ss_pred ccCCCCEEEEECCc
Confidence 3579999987643
No 75
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=44.94 E-value=62 Score=24.49 Aligned_cols=79 Identities=9% Similarity=0.053 Sum_probs=47.8
Q ss_pred eEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH-HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHh--
Q 017312 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF-- 279 (373)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~-- 279 (373)
.+|.++|..|... +.....|.+.|..|....+..-+ ..+++...|.|++... ++++ -|--.+..+-+.
T Consensus 3 ~~ILivdd~~~~~--~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~--~p~~-----~g~~~~~~l~~~~~ 73 (122)
T 3gl9_A 3 KKVLLVDDSAVLR--KIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIM--MPVM-----DGFTVLKKLQEKEE 73 (122)
T ss_dssp CEEEEECSCHHHH--HHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSC--CSSS-----CHHHHHHHHHTSTT
T ss_pred ceEEEEeCCHHHH--HHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecc--CCCC-----cHHHHHHHHHhccc
Confidence 3678888877653 23355688889988876665433 3455677899888543 3332 233333333222
Q ss_pred -CCCeEEEeccC
Q 017312 280 -HNILFYVAAPL 290 (373)
Q Consensus 280 -~~vPvyV~a~~ 290 (373)
.++|+++++..
T Consensus 74 ~~~~pii~~s~~ 85 (122)
T 3gl9_A 74 WKRIPVIVLTAK 85 (122)
T ss_dssp TTTSCEEEEESC
T ss_pred ccCCCEEEEecC
Confidence 47999998653
No 76
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=44.70 E-value=89 Score=23.49 Aligned_cols=82 Identities=10% Similarity=0.029 Sum_probs=48.8
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHH-HHHHHcC-CCCEEEEcceeEecCCCeecccchHHHHHHHH-
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-AALMKDG-RVSAVIVGADRVAANGDTANKIGTYSLALCAK- 278 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~-~~~m~~~-~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak- 278 (373)
..+|.++|..|... +.....|...|+.+....+..- -..+++. ..|.||+..+- .+| .-|--.+..+-+
T Consensus 5 ~~~ilivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l--~~~----~~g~~~~~~l~~~ 76 (132)
T 2rdm_A 5 AVTILLADDEAILL--LDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRF--CQP----PDGWQVARVAREI 76 (132)
T ss_dssp SCEEEEECSSHHHH--HHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCC--SSS----SCHHHHHHHHHHH
T ss_pred CceEEEEcCcHHHH--HHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeC--CCC----CCHHHHHHHHHhc
Confidence 46788888877643 2335568888998887665432 3344554 79999886542 221 123323333333
Q ss_pred hCCCeEEEeccCc
Q 017312 279 FHNILFYVAAPLT 291 (373)
Q Consensus 279 ~~~vPvyV~a~~~ 291 (373)
..++|+++++...
T Consensus 77 ~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 77 DPNMPIVYISGHA 89 (132)
T ss_dssp CTTCCEEEEESSC
T ss_pred CCCCCEEEEeCCc
Confidence 3479999986643
No 77
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=44.61 E-value=1.4e+02 Score=25.00 Aligned_cols=38 Identities=5% Similarity=0.064 Sum_probs=26.4
Q ss_pred CCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccC
Q 017312 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 246 ~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
.+=|.||+ |...|. ..-+..++-.||+.|+|++.++..
T Consensus 108 ~~~DvvI~----iS~SG~---t~~~i~~~~~ak~~g~~vI~IT~~ 145 (196)
T 2yva_A 108 HAGDVLLA----ISTRGN---SRDIVKAVEAAVTRDMTIVALTGY 145 (196)
T ss_dssp CTTCEEEE----ECSSSC---CHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCCCEEEE----EeCCCC---CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 55666653 334563 445667888999999999988653
No 78
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=44.29 E-value=53 Score=25.53 Aligned_cols=83 Identities=11% Similarity=0.005 Sum_probs=50.9
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHH-HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHH
Q 017312 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (373)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~-~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak 278 (373)
....+|.++|..|...- .....|.+.|+.|....+..- -..+++...|.||+..+- .++ -|--.+..+-+
T Consensus 6 ~~~~~iLivd~~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~~-----~g~~~~~~l~~ 76 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALA--ASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANM--PKI-----SGMDLFNSLKK 76 (147)
T ss_dssp --CEEEEEECTTGGGGH--HHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCC--SSS-----CHHHHHHHHHT
T ss_pred CCCceEEEEeCCHHHHH--HHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCC--CCC-----CHHHHHHHHHc
Confidence 45678899998876532 235568888998886665432 334455679999987643 221 23333333333
Q ss_pred ---hCCCeEEEeccCc
Q 017312 279 ---FHNILFYVAAPLT 291 (373)
Q Consensus 279 ---~~~vPvyV~a~~~ 291 (373)
..++|+++++...
T Consensus 77 ~~~~~~~pii~ls~~~ 92 (147)
T 2zay_A 77 NPQTASIPVIALSGRA 92 (147)
T ss_dssp STTTTTSCEEEEESSC
T ss_pred CcccCCCCEEEEeCCC
Confidence 3579999987654
No 79
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=44.05 E-value=61 Score=28.66 Aligned_cols=71 Identities=13% Similarity=0.060 Sum_probs=42.3
Q ss_pred ccccHHHHHHHHHHCCC-eeEEEEec-CCCCCcchHHHHHHHhhCCCCeEEEc----------chHHHHHHHcCCCCEEE
Q 017312 185 GYGTALGVIRALHSEGV-LERAYCSE-TRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVI 252 (373)
Q Consensus 185 g~~tal~~l~~a~~~g~-~~~V~v~E-srP~~qG~rlta~~L~~~GI~vtlI~----------Dsa~~~~m~~~~vd~Vi 252 (373)
|.|+.+..|..+.++|. ...|..+= .+|...|.+ ...+.|||+..+. |..+...+++.++|.++
T Consensus 9 g~gsnl~ali~~~~~~~~~~~i~~Vis~~~~~~~~~----~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv 84 (212)
T 1jkx_A 9 GNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLE----RARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVV 84 (212)
T ss_dssp SCCHHHHHHHHHHHTTSSSSEEEEEEESCTTCHHHH----HHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCCSEEE
T ss_pred CCcHHHHHHHHHHHcCCCCceEEEEEeCCCchHHHH----HHHHcCCcEEEeCcccccchhhccHHHHHHHHhcCCCEEE
Confidence 34565655555555553 34433222 334444432 2457899999875 35566677788999998
Q ss_pred Ecce-eEe
Q 017312 253 VGAD-RVA 259 (373)
Q Consensus 253 vGAd-~I~ 259 (373)
+.+= +|+
T Consensus 85 ~agy~~il 92 (212)
T 1jkx_A 85 LAGFMRIL 92 (212)
T ss_dssp ESSCCSCC
T ss_pred EeChhhhC
Confidence 8654 454
No 80
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=42.85 E-value=59 Score=29.13 Aligned_cols=108 Identities=18% Similarity=0.098 Sum_probs=58.4
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEE--cc-hHHHHHHHcC
Q 017312 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--AD-SAAAALMKDG 246 (373)
Q Consensus 170 ~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI--~D-sa~~~~m~~~ 246 (373)
.+||..+-+|.+ | ..+++.+.++|. .+|+++.-+|... .+..|...|+.+... .| ..+...+ .
T Consensus 6 ~~ilVtGatG~i-----G--~~l~~~L~~~g~-~~V~~~~R~~~~~----~~~~l~~~~~~~~~~D~~d~~~l~~~~--~ 71 (299)
T 2wm3_A 6 KLVVVFGGTGAQ-----G--GSVARTLLEDGT-FKVRVVTRNPRKK----AAKELRLQGAEVVQGDQDDQVIMELAL--N 71 (299)
T ss_dssp CEEEEETTTSHH-----H--HHHHHHHHHHCS-SEEEEEESCTTSH----HHHHHHHTTCEEEECCTTCHHHHHHHH--T
T ss_pred CEEEEECCCchH-----H--HHHHHHHHhcCC-ceEEEEEcCCCCH----HHHHHHHCCCEEEEecCCCHHHHHHHH--h
Confidence 456665544432 2 234455555552 4566665444321 134566677654322 12 3455667 7
Q ss_pred CCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCc
Q 017312 247 RVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (373)
Q Consensus 247 ~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (373)
++|.|+.-|...-....-.|-.|+..+.-+|+..|++-+|...+.
T Consensus 72 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~ 116 (299)
T 2wm3_A 72 GAYATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGLE 116 (299)
T ss_dssp TCSEEEECCCHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEECCCC
T ss_pred cCCEEEEeCCCCccccchHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 788888655321100111344578888888888899877775443
No 81
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=42.59 E-value=41 Score=26.47 Aligned_cols=81 Identities=14% Similarity=0.013 Sum_probs=47.0
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH-HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHH-
Q 017312 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK- 278 (373)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak- 278 (373)
+..+|.++|..|... ......|.+.|..+....+..-+ ..+++..+|.||+..+ ++++ -|.-.+..+-+
T Consensus 13 ~~~~iLivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--mp~~-----~g~~~~~~lr~~ 83 (143)
T 3m6m_D 13 RSMRMLVADDHEANR--MVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLH--MPGM-----NGLDMLKQLRVM 83 (143)
T ss_dssp --CEEEEECSSHHHH--HHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHHH
T ss_pred ccceEEEEeCCHHHH--HHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCC-----CHHHHHHHHHhc
Confidence 457899999887653 23355688889988877665432 3456678999988553 3332 23333333321
Q ss_pred ----hCCCeEEEeccC
Q 017312 279 ----FHNILFYVAAPL 290 (373)
Q Consensus 279 ----~~~vPvyV~a~~ 290 (373)
...+|+++++..
T Consensus 84 ~~~~~~~~pii~~s~~ 99 (143)
T 3m6m_D 84 QASGMRYTPVVVLSAD 99 (143)
T ss_dssp HHTTCCCCCEEEEESC
T ss_pred hhccCCCCeEEEEeCC
Confidence 135899998654
No 82
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=42.19 E-value=58 Score=23.68 Aligned_cols=78 Identities=6% Similarity=-0.065 Sum_probs=47.6
Q ss_pred EEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchH-HHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHh---
Q 017312 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA-AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF--- 279 (373)
Q Consensus 204 ~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa-~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~--- 279 (373)
+|.+.|..|... +.....|...|..+....+.. +-..+++...|.|++..+- .+ .-|.-.+..+-+.
T Consensus 3 ~iliv~~~~~~~--~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~--~~-----~~~~~~~~~l~~~~~~ 73 (119)
T 2j48_A 3 HILLLEEEDEAA--TVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPP--PD-----QSCLLLLQHLREHQAD 73 (119)
T ss_dssp EEEEECCCHHHH--HHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECST--TC-----CTHHHHHHHHHHTCCC
T ss_pred EEEEEeCCHHHH--HHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCC--CC-----CCHHHHHHHHHhcccc
Confidence 577778776543 223556888899888776543 2334455678999886542 22 2233334444444
Q ss_pred CCCeEEEeccC
Q 017312 280 HNILFYVAAPL 290 (373)
Q Consensus 280 ~~vPvyV~a~~ 290 (373)
.++|++++++.
T Consensus 74 ~~~~ii~~~~~ 84 (119)
T 2j48_A 74 PHPPLVLFLGE 84 (119)
T ss_dssp SSCCCEEEESS
T ss_pred CCCCEEEEeCC
Confidence 57999988764
No 83
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=41.72 E-value=1.1e+02 Score=22.81 Aligned_cols=81 Identities=17% Similarity=0.082 Sum_probs=49.8
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEc--c-hHHHHHHHcCCCCEEEEcceeEecCCCeecc
Q 017312 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA--D-SAAAALMKDGRVSAVIVGADRVAANGDTANK 267 (373)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~--D-sa~~~~m~~~~vd~VivGAd~I~~nG~v~nk 267 (373)
.+.+.+.+.| ..+|++.+-.|. ++ ..+...|+...... | ..+...+ .++|.||..+ | .
T Consensus 19 ~~~~~l~~~g-~~~v~~~~r~~~----~~--~~~~~~~~~~~~~d~~~~~~~~~~~--~~~d~vi~~~------~----~ 79 (118)
T 3ic5_A 19 MIAALLKTSS-NYSVTVADHDLA----AL--AVLNRMGVATKQVDAKDEAGLAKAL--GGFDAVISAA------P----F 79 (118)
T ss_dssp HHHHHHHHCS-SEEEEEEESCHH----HH--HHHHTTTCEEEECCTTCHHHHHHHT--TTCSEEEECS------C----G
T ss_pred HHHHHHHhCC-CceEEEEeCCHH----HH--HHHHhCCCcEEEecCCCHHHHHHHH--cCCCEEEECC------C----c
Confidence 3455566666 356777765432 22 24556676553321 2 3455566 6888888766 2 1
Q ss_pred cchHHHHHHHHhCCCeEEEeccC
Q 017312 268 IGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 268 iGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
..+..++..|+..|++++.++..
T Consensus 80 ~~~~~~~~~~~~~g~~~~~~~~~ 102 (118)
T 3ic5_A 80 FLTPIIAKAAKAAGAHYFDLTED 102 (118)
T ss_dssp GGHHHHHHHHHHTTCEEECCCSC
T ss_pred hhhHHHHHHHHHhCCCEEEecCc
Confidence 23678899999999999986543
No 84
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=41.69 E-value=1.5e+02 Score=26.38 Aligned_cols=95 Identities=9% Similarity=-0.061 Sum_probs=55.4
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHH---HHHHHhhCCCCeEEEcc---hH---HHHHHHcCCCCEEEEcceeEecCC
Q 017312 192 VIRALHSEGVLERAYCSETRPFNQGSRL---TAFELVHDRIPATLIAD---SA---AAALMKDGRVSAVIVGADRVAANG 262 (373)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rl---ta~~L~~~GI~vtlI~D---sa---~~~~m~~~~vd~VivGAd~I~~nG 262 (373)
.+..|...+..++++-+.. | .+..+. ....+...|++++.... +. +....++.++|.|++|...- |
T Consensus 27 A~~la~~~~a~l~ll~v~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~---~ 101 (290)
T 3mt0_A 27 AQLIAGVTQSHLHLLVCEK-R-RDHSAALNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPD---N 101 (290)
T ss_dssp HHHHHHHHCCEEEEEEECS-S-SCCHHHHHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCS---C
T ss_pred HHHHHHhcCCeEEEEEeeC-c-HHHHHHHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccC---C
Confidence 4556666677777554433 4 222221 23346678999876432 22 33333357899999999753 2
Q ss_pred Ceecc-cchHHHHHHHHhCCCeEEEeccCcc
Q 017312 263 DTANK-IGTYSLALCAKFHNILFYVAAPLTS 292 (373)
Q Consensus 263 ~v~nk-iGT~~lA~~Ak~~~vPvyV~a~~~k 292 (373)
..-.. .|+..-. +.++.++||+|+-+...
T Consensus 102 ~~~~~~~gs~~~~-vl~~~~~PVlvv~~~~~ 131 (290)
T 3mt0_A 102 PLKKAILTPDDWK-LLRFAPCPVLMTKTARP 131 (290)
T ss_dssp TTSTTSCCHHHHH-HHHHCSSCEEEECCCSC
T ss_pred chhhcccCHHHHH-HHhcCCCCEEEecCCCC
Confidence 22222 4665544 45678999999864443
No 85
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=41.69 E-value=76 Score=24.22 Aligned_cols=82 Identities=10% Similarity=-0.091 Sum_probs=50.3
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHhh-CCCC-eEEEcchH-HHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHH
Q 017312 201 VLERAYCSETRPFNQGSRLTAFELVH-DRIP-ATLIADSA-AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (373)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~~L~~-~GI~-vtlI~Dsa-~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~A 277 (373)
...+|.++|..|... +.....|.+ .|+. +....+.. +-..+++...|.||+..+- .+ .-|.-.+..+-
T Consensus 7 ~~~~iLivdd~~~~~--~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~-----~~g~~~~~~l~ 77 (143)
T 3cnb_A 7 NDFSILIIEDDKEFA--DMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMM--VG-----MDGFSICHRIK 77 (143)
T ss_dssp --CEEEEECSCHHHH--HHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTC--TT-----SCHHHHHHHHH
T ss_pred CCceEEEEECCHHHH--HHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEeccc--CC-----CcHHHHHHHHH
Confidence 457888999887653 233556887 8999 77666644 3344566789999987643 22 12333333333
Q ss_pred H---hCCCeEEEeccCc
Q 017312 278 K---FHNILFYVAAPLT 291 (373)
Q Consensus 278 k---~~~vPvyV~a~~~ 291 (373)
+ ..++|+++++...
T Consensus 78 ~~~~~~~~~ii~~s~~~ 94 (143)
T 3cnb_A 78 STPATANIIVIAMTGAL 94 (143)
T ss_dssp TSTTTTTSEEEEEESSC
T ss_pred hCccccCCcEEEEeCCC
Confidence 3 3579999987643
No 86
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=41.44 E-value=60 Score=25.59 Aligned_cols=83 Identities=12% Similarity=-0.012 Sum_probs=52.6
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHH-HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHH
Q 017312 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (373)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~-~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak 278 (373)
....+|.++|..|... +.....|.+.|..|....+..- -..+++..+|.||+..+- .++ -|--.+..+-+
T Consensus 12 ~~~~~ILivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l--~~~-----~g~~~~~~l~~ 82 (153)
T 3hv2_A 12 TRRPEILLVDSQEVIL--QRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHL--PQM-----DGPTLLARIHQ 82 (153)
T ss_dssp CSCCEEEEECSCHHHH--HHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCC--SSS-----CHHHHHHHHHH
T ss_pred cCCceEEEECCCHHHH--HHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCC--CcC-----cHHHHHHHHHh
Confidence 3457888888887653 2335568888998887766543 344566789999987653 222 23333333333
Q ss_pred -hCCCeEEEeccCc
Q 017312 279 -FHNILFYVAAPLT 291 (373)
Q Consensus 279 -~~~vPvyV~a~~~ 291 (373)
..++|+++++...
T Consensus 83 ~~~~~~ii~~s~~~ 96 (153)
T 3hv2_A 83 QYPSTTRILLTGDP 96 (153)
T ss_dssp HCTTSEEEEECCCC
T ss_pred HCCCCeEEEEECCC
Confidence 3579999987643
No 87
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=41.35 E-value=1.5e+02 Score=24.50 Aligned_cols=62 Identities=11% Similarity=-0.013 Sum_probs=38.0
Q ss_pred HHHHhhCCCCeEEEc-ch-HHHHHHHc-CCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEecc
Q 017312 221 AFELVHDRIPATLIA-DS-AAAALMKD-GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (373)
Q Consensus 221 a~~L~~~GI~vtlI~-Ds-a~~~~m~~-~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (373)
+..|...|+++..+. |. .....+.. .+=|.||+ |...|.. .-+..++-.||..|+|+++++.
T Consensus 58 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~----iS~sG~t---~~~~~~~~~ak~~g~~vi~IT~ 122 (187)
T 3sho_A 58 GHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIG----VSVWRYL---RDTVAALAGAAERGVPTMALTD 122 (187)
T ss_dssp HHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEE----ECCSSCC---HHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEE----EeCCCCC---HHHHHHHHHHHHCCCCEEEEeC
Confidence 344566788888887 33 22222211 33355443 3345643 3477788899999999999865
No 88
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=41.07 E-value=85 Score=25.83 Aligned_cols=81 Identities=11% Similarity=-0.013 Sum_probs=51.7
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH-HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHH-Hh
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA-KF 279 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~A-k~ 279 (373)
..+|.++|..|... ......|.+.|..|....|..-+ ..+++..+|.||+..+ ++++ -|--.+..+- +.
T Consensus 7 ~~~iLivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~-----~g~~~~~~l~~~~ 77 (184)
T 3rqi_A 7 DKNFLVIDDNEVFA--GTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLH--LGND-----SGLSLIAPLCDLQ 77 (184)
T ss_dssp CCEEEEECSCHHHH--HHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSE--ETTE-----ESHHHHHHHHHHC
T ss_pred CCeEEEEcCCHHHH--HHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEecc--CCCc-----cHHHHHHHHHhcC
Confidence 45788888888653 23355688889988777666533 3455677999998654 3432 2433333333 34
Q ss_pred CCCeEEEeccCc
Q 017312 280 HNILFYVAAPLT 291 (373)
Q Consensus 280 ~~vPvyV~a~~~ 291 (373)
.++|+++++...
T Consensus 78 ~~~~ii~lt~~~ 89 (184)
T 3rqi_A 78 PDARILVLTGYA 89 (184)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCCEEEEeCCC
Confidence 579999987654
No 89
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=40.90 E-value=45 Score=25.60 Aligned_cols=84 Identities=13% Similarity=-0.029 Sum_probs=50.2
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEE-EcchH-HHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHH
Q 017312 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATL-IADSA-AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (373)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtl-I~Dsa-~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~A 277 (373)
....+|.++|..|... +.....|.+.|+.+.. ..+.. +-..+++...|.||+..+- .+| .-|--.+..+-
T Consensus 7 ~~~~~iLivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~--~~~----~~g~~~~~~l~ 78 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLAA--ATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIML--CGA----LDGVETAARLA 78 (140)
T ss_dssp -CCCEEEEECCBHHHH--HHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSC--CSS----SCHHHHHHHHH
T ss_pred CCCceEEEEECCHHHH--HHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCC--CCC----CCHHHHHHHHH
Confidence 3467888888877653 2235567788998885 54432 2334455679999987643 111 12333333333
Q ss_pred HhCCCeEEEeccCc
Q 017312 278 KFHNILFYVAAPLT 291 (373)
Q Consensus 278 k~~~vPvyV~a~~~ 291 (373)
+..++|+++++...
T Consensus 79 ~~~~~~ii~ls~~~ 92 (140)
T 3cg0_A 79 AGCNLPIIFITSSQ 92 (140)
T ss_dssp HHSCCCEEEEECCC
T ss_pred hCCCCCEEEEecCC
Confidence 33789999987643
No 90
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=40.80 E-value=67 Score=24.66 Aligned_cols=82 Identities=9% Similarity=-0.012 Sum_probs=50.9
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchH-HHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHH-
Q 017312 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA-AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK- 278 (373)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa-~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak- 278 (373)
...+|.++|..|... ......|...|+.|....+.. +-..+++...|.||+..+- .+ .-|--.+..+.+
T Consensus 6 ~~~~iLivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~-----~~g~~~~~~l~~~ 76 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVR--IAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMM--PG-----MDGWDTIRAILDN 76 (142)
T ss_dssp CCCEEEEECSCHHHH--HHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCC--SS-----SCHHHHHHHHHHT
T ss_pred CCCeEEEEcCCHHHH--HHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCC--CC-----CCHHHHHHHHHhh
Confidence 456788888877653 233556888899887776643 3344566778999887643 22 123333333433
Q ss_pred --hCCCeEEEeccCc
Q 017312 279 --FHNILFYVAAPLT 291 (373)
Q Consensus 279 --~~~vPvyV~a~~~ 291 (373)
..++|+++++...
T Consensus 77 ~~~~~~pii~~s~~~ 91 (142)
T 3cg4_A 77 SLEQGIAIVMLTAKN 91 (142)
T ss_dssp TCCTTEEEEEEECTT
T ss_pred cccCCCCEEEEECCC
Confidence 3568999987643
No 91
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=40.64 E-value=67 Score=32.08 Aligned_cols=96 Identities=11% Similarity=0.010 Sum_probs=59.4
Q ss_pred HHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHH-----CCCeeEEEEec---------C----------
Q 017312 155 SYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHS-----EGVLERAYCSE---------T---------- 210 (373)
Q Consensus 155 ~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~-----~g~~~~V~v~E---------s---------- 210 (373)
+.++++|+ +|++|.+.+.+ |+. ..+++...+ .-++++++..= .
T Consensus 30 eEAv~lIk-----dGdtV~~gG~~------g~P--~~L~~AL~~r~~~g~~~~ltl~~~~~~G~~~~~~~~~~~~~~~~~ 96 (455)
T 3qli_A 30 EEAVSSIA-----SGSHLSMGMFA------AEP--PALLKALADRATRGDIGDLRVYYFETAKIAGDTILRYELNNRIKP 96 (455)
T ss_dssp HHHTTTCC-----TTCEEEECSGG------GSC--HHHHHHHHHHHHTTCCCSEEEEESSCCHHHHHTTTCGGGTTTEEE
T ss_pred HHHHHhCC-----CCCEEEECCcc------cCH--HHHHHHHHHHHhhCCCcceEEEEecccccchhhhhChhhcCcEEE
Confidence 34567888 99999987543 333 333332222 23457776421 1
Q ss_pred CCCCcchHHHHHHHhhCC--------CCeEEEcchHHHHHHHc-CCCCEEEEcceeEecCCCee
Q 017312 211 RPFNQGSRLTAFELVHDR--------IPATLIADSAAAALMKD-GRVSAVIVGADRVAANGDTA 265 (373)
Q Consensus 211 rP~~qG~rlta~~L~~~G--------I~vtlI~Dsa~~~~m~~-~~vd~VivGAd~I~~nG~v~ 265 (373)
+|++.|.- .+++.+.| +..+-+--|.++.+++. .++|.+++.|...-.+|.+.
T Consensus 97 ~~~f~~~~--~R~~i~~G~~~~~~~~~~y~p~~ls~~p~~~~~~~~iDVAli~vs~~D~~G~~s 158 (455)
T 3qli_A 97 YSMFVTAV--ERALIRRGIEDGGRKVVNYVPSNFHQAPRLLAEEIGIDTFMHTVSPMDCHGYFS 158 (455)
T ss_dssp EESSCCHH--HHHHHHHHHHTTTCCCCCCCCCCGGGHHHHHHTTTCCSEEEEEECCCCTTSEEE
T ss_pred eeCcCChh--HHHHHhCCCcccCcCcEEEECccHHHHHHHHHhcCCCCEEEEEEecCCCCceEE
Confidence 13445532 35566666 56666667788877743 57999999999998888764
No 92
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=40.45 E-value=1.7e+02 Score=24.98 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=26.2
Q ss_pred CCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEecc
Q 017312 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (373)
Q Consensus 246 ~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (373)
.+=|.||+ |...|.. --+..++-.||+.|+|+++++.
T Consensus 113 ~~~Dvvi~----iS~SG~t---~~~~~~~~~ak~~g~~vi~iT~ 149 (201)
T 3trj_A 113 NEDDILLV----ITTSGDS---ENILSAVEEAHDLEMKVIALTG 149 (201)
T ss_dssp CTTCEEEE----ECSSSCC---HHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEE----EeCCCCC---HHHHHHHHHHHHCCCcEEEEEC
Confidence 56676664 4446643 3366778899999999999865
No 93
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=40.03 E-value=1.4e+02 Score=26.66 Aligned_cols=102 Identities=16% Similarity=0.106 Sum_probs=55.6
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCC---cchHHHHHHHhhCCCCeEE--Ecc-hHHHHHHH
Q 017312 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFN---QGSRLTAFELVHDRIPATL--IAD-SAAAALMK 244 (373)
Q Consensus 171 ~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~---qG~rlta~~L~~~GI~vtl--I~D-sa~~~~m~ 244 (373)
+||..+-||.+ | ..+++.+.++|. +|+++.-++.. +..+. ..+|...|+.+.. +.| ..+...+
T Consensus 6 ~ilVtGatG~i-----G--~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~d~~~l~~~~- 74 (313)
T 1qyd_A 6 RVLIVGGTGYI-----G--KRIVNASISLGH--PTYVLFRPEVVSNIDKVQM-LLYFKQLGAKLIEASLDDHQRLVDAL- 74 (313)
T ss_dssp CEEEESTTSTT-----H--HHHHHHHHHTTC--CEEEECCSCCSSCHHHHHH-HHHHHTTTCEEECCCSSCHHHHHHHH-
T ss_pred EEEEEcCCcHH-----H--HHHHHHHHhCCC--cEEEEECCCcccchhHHHH-HHHHHhCCeEEEeCCCCCHHHHHHHH-
Confidence 45555545433 2 234455556674 55555433321 11111 1235556664432 123 3456667
Q ss_pred cCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCC-CeEEEe
Q 017312 245 DGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN-ILFYVA 287 (373)
Q Consensus 245 ~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~-vPvyV~ 287 (373)
.++|.||--|-... . -.|-.|+..+.-+|+..| ++-+|.
T Consensus 75 -~~~d~vi~~a~~~~-~--~~~~~~~~~l~~aa~~~g~v~~~v~ 114 (313)
T 1qyd_A 75 -KQVDVVISALAGGV-L--SHHILEQLKLVEAIKEAGNIKRFLP 114 (313)
T ss_dssp -TTCSEEEECCCCSS-S--STTTTTHHHHHHHHHHSCCCSEEEC
T ss_pred -hCCCEEEECCcccc-c--hhhHHHHHHHHHHHHhcCCCceEEe
Confidence 67888776553221 1 127789999999999998 887774
No 94
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=39.76 E-value=41 Score=29.12 Aligned_cols=47 Identities=21% Similarity=0.080 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcc
Q 017312 188 TALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD 236 (373)
Q Consensus 188 tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~D 236 (373)
.+...|..|.++|.+.+|+++.......+.. ...|.+.||++.....
T Consensus 73 ~i~~aL~~aa~rGV~Vrii~D~~~~~~~~~~--~~~l~~~gi~v~~~~~ 119 (196)
T 4ggj_A 73 QLGRAVQLLHQRGVRVRVITDCDYMALNGSQ--IGLLRKAGIQVRHDQD 119 (196)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCCC---CCH--HHHHHHTTCEEEECCS
T ss_pred HHHHHHHHHHHcCCcEEEEEecccccccHHH--HHHHHhcCCCcccccc
Confidence 4667788888899999999876544444443 3468999999876543
No 95
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=38.91 E-value=87 Score=23.63 Aligned_cols=80 Identities=11% Similarity=-0.026 Sum_probs=48.3
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH-HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHh-
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF- 279 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~- 279 (373)
+.+|.++|..|.... .....|. .|..|....+..-+ ..+++..+|.||+..+- .+ .-|.-.+..+-+.
T Consensus 4 ~~~ilivdd~~~~~~--~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~-----~~g~~~~~~l~~~~ 73 (133)
T 3nhm_A 4 KPKVLIVENSWTMRE--TLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVNM--DG-----MDGYALCGHFRSEP 73 (133)
T ss_dssp -CEEEEECSCHHHHH--HHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSSC--SS-----SCHHHHHHHHHHST
T ss_pred CCEEEEEcCCHHHHH--HHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCCC--CC-----CCHHHHHHHHHhCC
Confidence 467888888776532 2243455 88888877765433 34556789999987643 22 2243344444432
Q ss_pred --CCCeEEEeccCc
Q 017312 280 --HNILFYVAAPLT 291 (373)
Q Consensus 280 --~~vPvyV~a~~~ 291 (373)
.++|+++++...
T Consensus 74 ~~~~~pii~~s~~~ 87 (133)
T 3nhm_A 74 TLKHIPVIFVSGYA 87 (133)
T ss_dssp TTTTCCEEEEESCC
T ss_pred ccCCCCEEEEeCCC
Confidence 379999987643
No 96
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}
Probab=38.71 E-value=1.3e+02 Score=30.14 Aligned_cols=97 Identities=23% Similarity=0.118 Sum_probs=57.2
Q ss_pred HHHHHHHCCCeeEEEEecCCC-CCcchHHHHHHHhhCCCCeEEE-cc----hHHHHHHHcCCCCEEEEcceeEecCCCe-
Q 017312 192 VIRALHSEGVLERAYCSETRP-FNQGSRLTAFELVHDRIPATLI-AD----SAAAALMKDGRVSAVIVGADRVAANGDT- 264 (373)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP-~~qG~rlta~~L~~~GI~vtlI-~D----sa~~~~m~~~~vd~VivGAd~I~~nG~v- 264 (373)
+.+.+.++|.. +|+++--++ ..++..-...+|.+.|..++++ +| .++..+++.+++|.||-.|- +..+|.+
T Consensus 275 lA~~La~~G~~-~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~ld~VVh~AG-v~~~~~~~ 352 (511)
T 2z5l_A 275 LARRLAAEGAE-RLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPPNAVFHTAG-ILDDAVID 352 (511)
T ss_dssp HHHHHHHTTCS-EEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCCSEEEECCC-CCCCBCGG
T ss_pred HHHHHHhCCCc-EEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCCcEEEECCc-ccCCcccc
Confidence 44555556653 344443222 2223322345788889888765 23 44666675567999988774 3344422
Q ss_pred ------------ecccchHHHHHHHHhC-CCeEEEeccC
Q 017312 265 ------------ANKIGTYSLALCAKFH-NILFYVAAPL 290 (373)
Q Consensus 265 ------------~nkiGT~~lA~~Ak~~-~vPvyV~a~~ 290 (373)
.|-.|+..+.-+++.+ +..++|...+
T Consensus 353 ~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS 391 (511)
T 2z5l_A 353 TLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSS 391 (511)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeC
Confidence 3567888888777776 6777766544
No 97
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=38.62 E-value=38 Score=26.69 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=29.0
Q ss_pred HHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 242 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 242 ~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
.++++++..||+..|+ -.| +...+-.+|++++||+|.+
T Consensus 32 ai~~gka~lViiA~D~-~~~-------~~~~l~~~c~~~~Vp~~~~ 69 (110)
T 3cpq_A 32 FVKHGEGKLVVLAGNI-PKD-------LEEDVKYYAKLSNIPVYQH 69 (110)
T ss_dssp HHHTTCCSEEEECTTC-BHH-------HHHHHHHHHHHTTCCEEEC
T ss_pred HHHcCCceEEEEeCCC-CHH-------HHHHHHHHHHHcCCCEEEE
Confidence 3456899999998887 444 3455667799999999986
No 98
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=37.91 E-value=69 Score=29.78 Aligned_cols=69 Identities=14% Similarity=0.096 Sum_probs=43.2
Q ss_pred ccccHHHHHHHHHHCCC-eeEEEE-ecCCCCCcchHHHHHHHhhCCCCeEEEc---------chHHHHHHHcCCCCEEEE
Q 017312 185 GYGTALGVIRALHSEGV-LERAYC-SETRPFNQGSRLTAFELVHDRIPATLIA---------DSAAAALMKDGRVSAVIV 253 (373)
Q Consensus 185 g~~tal~~l~~a~~~g~-~~~V~v-~EsrP~~qG~rlta~~L~~~GI~vtlI~---------Dsa~~~~m~~~~vd~Viv 253 (373)
|.|+.+.-|..+++.|. ...|.+ .=.+|...+ + ..+.|||+..++ |..+...+++.++|.+++
T Consensus 99 g~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~--~----A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivl 172 (286)
T 3n0v_A 99 KADHCLNDLLYRQRIGQLGMDVVAVVSNHPDLEP--L----AHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVIL 172 (286)
T ss_dssp SCCHHHHHHHHHHHTTSSCCEEEEEEESSSTTHH--H----HHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCCHHHHHHHHHCCCCCcEEEEEEeCcHHHHH--H----HHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 45777776666666664 234333 333554322 2 247899999886 345666777789999888
Q ss_pred cce-eEe
Q 017312 254 GAD-RVA 259 (373)
Q Consensus 254 GAd-~I~ 259 (373)
..= +|+
T Consensus 173 a~y~~il 179 (286)
T 3n0v_A 173 ARYMQVL 179 (286)
T ss_dssp SSCCSCC
T ss_pred ccccccc
Confidence 654 444
No 99
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=37.82 E-value=57 Score=29.93 Aligned_cols=111 Identities=15% Similarity=0.075 Sum_probs=60.7
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhh-------CCCCeEEE--cc-h
Q 017312 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH-------DRIPATLI--AD-S 237 (373)
Q Consensus 168 ~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~-------~GI~vtlI--~D-s 237 (373)
.+.+||.-+-||.+ | ..+++.+.++| .+|+++.-++...... ...+.. .++.+... .| .
T Consensus 24 ~~~~vlVtGatG~i-----G--~~l~~~L~~~g--~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 92 (351)
T 3ruf_A 24 SPKTWLITGVAGFI-----G--SNLLEKLLKLN--QVVIGLDNFSTGHQYN--LDEVKTLVSTEQWSRFCFIEGDIRDLT 92 (351)
T ss_dssp SCCEEEEETTTSHH-----H--HHHHHHHHHTT--CEEEEEECCSSCCHHH--HHHHHHTSCHHHHTTEEEEECCTTCHH
T ss_pred CCCeEEEECCCcHH-----H--HHHHHHHHHCC--CEEEEEeCCCCCchhh--hhhhhhccccccCCceEEEEccCCCHH
Confidence 35567666555433 2 23445566667 4677666554432222 223433 34443321 12 3
Q ss_pred HHHHHHHcCCCCEEEEcceeEecCC--------CeecccchHHHHHHHHhCCCeEEEeccCc
Q 017312 238 AAAALMKDGRVSAVIVGADRVAANG--------DTANKIGTYSLALCAKFHNILFYVAAPLT 291 (373)
Q Consensus 238 a~~~~m~~~~vd~VivGAd~I~~nG--------~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (373)
.+..++ .++|.||--|-....+. --.|-.||..+.-+|+.++++-+|...+.
T Consensus 93 ~~~~~~--~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~ 152 (351)
T 3ruf_A 93 TCEQVM--KGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASS 152 (351)
T ss_dssp HHHHHT--TTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEG
T ss_pred HHHHHh--cCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecH
Confidence 355666 67888876664211110 13578899999999999998655554443
No 100
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=37.78 E-value=1.6e+02 Score=23.67 Aligned_cols=62 Identities=8% Similarity=0.099 Sum_probs=38.7
Q ss_pred HHhhCCCCeEE---Ec----chHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 223 ELVHDRIPATL---IA----DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 223 ~L~~~GI~vtl---I~----Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
.|.+.|+++.. +. -..+..+.++.++|.|++|+..--.-+.. -.|+-.-. +.++-.+||+|+
T Consensus 86 ~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~--~lGSv~~~-vl~~a~~PVLvV 154 (155)
T 3dlo_A 86 IIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKL--IFGSVARD-VILKANKPVICI 154 (155)
T ss_dssp HHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCE--ECCHHHHH-HHHHCSSCEEEE
T ss_pred HHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCE--EeccHHHH-HHHhCCCCEEEe
Confidence 45678988764 32 12344455566999999999875221111 24655444 456778999986
No 101
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=37.59 E-value=1.2e+02 Score=28.42 Aligned_cols=84 Identities=7% Similarity=-0.042 Sum_probs=43.9
Q ss_pred HCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcch---------HHHHHHHcCCCCEEEEcceeEecCCCeeccc
Q 017312 198 SEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS---------AAAALMKDGRVSAVIVGADRVAANGDTANKI 268 (373)
Q Consensus 198 ~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Ds---------a~~~~m~~~~vd~VivGAd~I~~nG~v~nki 268 (373)
+.|...+|++. .|.+.+... .+...|..+..++-. .+-..+++.++..|++. .--.+.|.+...-
T Consensus 129 ~~gd~~~Vl~~--~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~-~p~nptG~~~~~~ 202 (437)
T 3g0t_A 129 HKNREYGTLFI--DPGFNLNKL---QCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYS-NPNNPTWQCMTDE 202 (437)
T ss_dssp CTTCSCCEEEE--ESCCHHHHH---HHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEE-SSCTTTCCCCCHH
T ss_pred CCCCccEEEEe--CCCcHhHHH---HHHHcCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEe-CCCCCCCCcCCHH
Confidence 44442255555 466665432 244567777776521 23333435677777651 1111233333222
Q ss_pred chHHHHHHHHhCCCeEEEe
Q 017312 269 GTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 269 GT~~lA~~Ak~~~vPvyV~ 287 (373)
--..++-+|++||+++++=
T Consensus 203 ~l~~i~~~a~~~~~~li~D 221 (437)
T 3g0t_A 203 ELRIIGELATKHDVIVIED 221 (437)
T ss_dssp HHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHCCcEEEEE
Confidence 2333677899999998873
No 102
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=37.33 E-value=62 Score=24.77 Aligned_cols=82 Identities=10% Similarity=-0.064 Sum_probs=50.9
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHH-HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHH-
Q 017312 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK- 278 (373)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~-~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak- 278 (373)
..++|.++|..|... +.....|.+.|..+....+..- -..+++...|.||+..+- .++ -|.-.+..+-+
T Consensus 6 ~~~~ilivdd~~~~~--~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~~-----~g~~~~~~l~~~ 76 (137)
T 3hdg_A 6 VALKILIVEDDTDAR--EWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRM--PKL-----GGLEMLDRIKAG 76 (137)
T ss_dssp -CCCEEEECSCHHHH--HHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSC--SSS-----CHHHHHHHHHHT
T ss_pred cccEEEEEeCCHHHH--HHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCC--CCC-----CHHHHHHHHHhc
Confidence 457888888877653 2335568888888887776543 334566789999887652 222 23333333333
Q ss_pred hCCCeEEEeccCc
Q 017312 279 FHNILFYVAAPLT 291 (373)
Q Consensus 279 ~~~vPvyV~a~~~ 291 (373)
..++|+++++...
T Consensus 77 ~~~~~ii~~s~~~ 89 (137)
T 3hdg_A 77 GAKPYVIVISAFS 89 (137)
T ss_dssp TCCCEEEECCCCC
T ss_pred CCCCcEEEEecCc
Confidence 3478998886644
No 103
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=37.08 E-value=1e+02 Score=23.34 Aligned_cols=79 Identities=5% Similarity=-0.028 Sum_probs=47.0
Q ss_pred eEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHH-HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHh-C
Q 017312 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF-H 280 (373)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~-~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~-~ 280 (373)
.+|.++|..|... ......|...|..+....+..- -..+++...|.|++..+- ++. -|.-.+..+.+. .
T Consensus 4 ~~ilivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l--~~~-----~g~~~~~~l~~~~~ 74 (136)
T 1mvo_A 4 KKILVVDDEESIV--TLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVML--PKL-----DGIEVCKQLRQQKL 74 (136)
T ss_dssp CEEEEECSCHHHH--HHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESSC--SSS-----CHHHHHHHHHHTTC
T ss_pred CEEEEEECCHHHH--HHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecCC--CCC-----CHHHHHHHHHcCCC
Confidence 4678888776543 2234567788988876665432 233455678999886542 222 233333333333 5
Q ss_pred CCeEEEeccC
Q 017312 281 NILFYVAAPL 290 (373)
Q Consensus 281 ~vPvyV~a~~ 290 (373)
.+|+++++..
T Consensus 75 ~~~ii~~s~~ 84 (136)
T 1mvo_A 75 MFPILMLTAK 84 (136)
T ss_dssp CCCEEEEECT
T ss_pred CCCEEEEECC
Confidence 7899988654
No 104
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=36.97 E-value=1.4e+02 Score=22.96 Aligned_cols=59 Identities=12% Similarity=0.050 Sum_probs=36.2
Q ss_pred HhhCCCCe--EEEc-c---hHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEec
Q 017312 224 LVHDRIPA--TLIA-D---SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (373)
Q Consensus 224 L~~~GI~v--tlI~-D---sa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (373)
+.+.|+++ +.+. . ..+..+.++.++|.+++|+. . |. ..+.|+. ..-+.++-++||+|+-
T Consensus 73 ~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~---~-~~-~~~lgs~-~~~vl~~~~~pVlvv~ 137 (141)
T 1jmv_A 73 AESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH---Q-DF-WSKLMSS-TRQVMNTIKIDMLVVP 137 (141)
T ss_dssp HHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC---C-CC-HHHHHHH-HHHHHTTCCSEEEEEE
T ss_pred HHHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC---C-ch-hhhhcch-HHHHHhcCCCCEEEee
Confidence 34568875 2332 2 23344445678999999987 2 22 3346743 3345677789999973
No 105
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=36.93 E-value=1.3e+02 Score=23.11 Aligned_cols=59 Identities=7% Similarity=0.020 Sum_probs=34.5
Q ss_pred HHhhCCCCeEEEc--c---hHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 223 ELVHDRIPATLIA--D---SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 223 ~L~~~GI~vtlI~--D---sa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
.+.+.|+++.... . ..+..+. .++|.+++|+..- |.+-...|+..-.+ .++-.+||+|+
T Consensus 74 ~~~~~g~~~~~~v~~g~~~~~I~~~a--~~~dliV~G~~~~---~~~~~~~Gs~~~~v-l~~~~~pVlvv 137 (138)
T 3idf_A 74 FFTEKGINPFVVIKEGEPVEMVLEEA--KDYNLLIIGSSEN---SFLNKIFASHQDDF-IQKAPIPVLIV 137 (138)
T ss_dssp HHHTTTCCCEEEEEESCHHHHHHHHH--TTCSEEEEECCTT---STTSSCCCCTTCHH-HHHCSSCEEEE
T ss_pred HHHHCCCCeEEEEecCChHHHHHHHH--hcCCEEEEeCCCc---chHHHHhCcHHHHH-HhcCCCCEEEe
Confidence 3556788865432 1 2233333 3999999999752 22322225544434 45667999986
No 106
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=36.91 E-value=21 Score=28.07 Aligned_cols=82 Identities=4% Similarity=-0.061 Sum_probs=51.0
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHhhCC-CCeEEEcchH-HHHHHH-c-CCCCEEEEcceeEecCCCeecccchHHHHH
Q 017312 200 GVLERAYCSETRPFNQGSRLTAFELVHDR-IPATLIADSA-AAALMK-D-GRVSAVIVGADRVAANGDTANKIGTYSLAL 275 (373)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~~L~~~G-I~vtlI~Dsa-~~~~m~-~-~~vd~VivGAd~I~~nG~v~nkiGT~~lA~ 275 (373)
....+|.++|..|... ......|.+.| +.+....+.. +...+. . ..+|.||+..+- .+ .-|--.+..
T Consensus 18 ~~~~~ilivdd~~~~~--~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l--~~-----~~g~~~~~~ 88 (146)
T 4dad_A 18 QGMINILVASEDASRL--AHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAA--LD-----TAELAAIEK 88 (146)
T ss_dssp GGGCEEEEECSCHHHH--HHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTT--CC-----HHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHH--HHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCC--CC-----ccHHHHHHH
Confidence 4467899999887653 23355688888 8888877765 333333 3 789999986542 22 123333333
Q ss_pred HHH-hCCCeEEEeccC
Q 017312 276 CAK-FHNILFYVAAPL 290 (373)
Q Consensus 276 ~Ak-~~~vPvyV~a~~ 290 (373)
+-+ ..++|+++++..
T Consensus 89 l~~~~~~~~ii~lt~~ 104 (146)
T 4dad_A 89 LSRLHPGLTCLLVTTD 104 (146)
T ss_dssp HHHHCTTCEEEEEESC
T ss_pred HHHhCCCCcEEEEeCC
Confidence 333 347999998654
No 107
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=36.45 E-value=95 Score=22.81 Aligned_cols=78 Identities=10% Similarity=0.036 Sum_probs=45.8
Q ss_pred EEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH-HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCC
Q 017312 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNI 282 (373)
Q Consensus 204 ~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~v 282 (373)
+|.++|..|... ......|.+.|..+....+..-+ ..+.+...|.|++..+ +++. -|--.+..+.+...+
T Consensus 3 ~ilivdd~~~~~--~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~~ 73 (121)
T 1zh2_A 3 NVLIVEDEQAIR--RFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLG--LPDG-----DGIEFIRDLRQWSAV 73 (121)
T ss_dssp EEEEECSCHHHH--HHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESE--ETTE-----EHHHHHHHHHTTCCC
T ss_pred EEEEEeCCHHHH--HHHHHHHhcCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCC-----cHHHHHHHHHhCCCC
Confidence 577778776543 22345677788888766654432 2334467899988654 3321 233333334445578
Q ss_pred eEEEeccC
Q 017312 283 LFYVAAPL 290 (373)
Q Consensus 283 PvyV~a~~ 290 (373)
|+++++..
T Consensus 74 ~ii~~s~~ 81 (121)
T 1zh2_A 74 PVIVLSAR 81 (121)
T ss_dssp CEEEEESC
T ss_pred cEEEEECC
Confidence 99887653
No 108
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=36.29 E-value=1.2e+02 Score=22.62 Aligned_cols=81 Identities=11% Similarity=-0.015 Sum_probs=46.7
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHhhCCC-CeEEEcchHH-HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHH
Q 017312 201 VLERAYCSETRPFNQGSRLTAFELVHDRI-PATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (373)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~~L~~~GI-~vtlI~Dsa~-~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak 278 (373)
+..+|.++|..|... +.....|.+.|. .+....+..- -..+.+...|.|++..+ +++. -|--.+..+-+
T Consensus 3 ~~~~ilivdd~~~~~--~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~-----~g~~l~~~l~~ 73 (128)
T 1jbe_A 3 KELKFLVVDDFSTMR--RIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWN--MPNM-----DGLELLKTIRA 73 (128)
T ss_dssp TTCCEEEECSCHHHH--HHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESC--CSSS-----CHHHHHHHHHC
T ss_pred CccEEEEECCCHHHH--HHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeCC--CCCC-----CHHHHHHHHHh
Confidence 456788888877653 223456778888 5666665432 23445567899988543 3322 23323333332
Q ss_pred ---hCCCeEEEeccC
Q 017312 279 ---FHNILFYVAAPL 290 (373)
Q Consensus 279 ---~~~vPvyV~a~~ 290 (373)
...+|+++++..
T Consensus 74 ~~~~~~~~ii~~s~~ 88 (128)
T 1jbe_A 74 XXAMSALPVLMVTAE 88 (128)
T ss_dssp --CCTTCCEEEEESS
T ss_pred hcccCCCcEEEEecC
Confidence 136899987653
No 109
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=36.14 E-value=1.3e+02 Score=23.11 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=49.8
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHhhCCCC--eEEEcchHH-HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHH
Q 017312 201 VLERAYCSETRPFNQGSRLTAFELVHDRIP--ATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (373)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~~L~~~GI~--vtlI~Dsa~-~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~A 277 (373)
...+|.++|..|... +.....|.+.|.. +....+..- -..+++...|.||+..+- .++ -|.-.+..+-
T Consensus 4 ~~~~ILivdd~~~~~--~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l--~~~-----~g~~~~~~lr 74 (144)
T 3kht_A 4 RSKRVLVVEDNPDDI--ALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGL--PIA-----NGFEVMSAVR 74 (144)
T ss_dssp -CEEEEEECCCHHHH--HHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTC--GGG-----CHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHH--HHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCC--CCC-----CHHHHHHHHH
Confidence 356888888877653 2335568888988 555555442 334566789999887652 222 2333333333
Q ss_pred H---hCCCeEEEeccCc
Q 017312 278 K---FHNILFYVAAPLT 291 (373)
Q Consensus 278 k---~~~vPvyV~a~~~ 291 (373)
+ ..++|+++++...
T Consensus 75 ~~~~~~~~pii~~s~~~ 91 (144)
T 3kht_A 75 KPGANQHTPIVILTDNV 91 (144)
T ss_dssp SSSTTTTCCEEEEETTC
T ss_pred hcccccCCCEEEEeCCC
Confidence 3 3579999987643
No 110
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=36.09 E-value=87 Score=25.11 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEc
Q 017312 188 TALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA 235 (373)
Q Consensus 188 tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~ 235 (373)
.+...|..|.++|.+.+|++..........+-....|.+.|+++....
T Consensus 41 ~i~~aL~~a~~rGV~Vril~~~~~~~~~~~~~~~~~L~~~gv~v~~~~ 88 (155)
T 1byr_A 41 DIMKALVAAKKRGVDVKIVIDERGNTGRASIAAMNYIANSGIPLRTDS 88 (155)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTCCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEEeCccccccccHHHHHHHHHCCCeEEEcC
Confidence 466677888888999999887653221122223456888999988763
No 111
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=35.78 E-value=1.3e+02 Score=22.55 Aligned_cols=54 Identities=7% Similarity=-0.021 Sum_probs=36.7
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH-HHHHcCCCCEEEEcce
Q 017312 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGAD 256 (373)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd 256 (373)
...+|.++|..|... +.....|.+.|..|....+..-+ ..+++...|.||+..+
T Consensus 5 ~~~~ilivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~ 59 (132)
T 3lte_A 5 QSKRILVVDDDQAMA--AAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLS 59 (132)
T ss_dssp --CEEEEECSCHHHH--HHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESC
T ss_pred CCccEEEEECCHHHH--HHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecC
Confidence 356888888877653 23355688899988877665433 3456688999988664
No 112
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=35.70 E-value=67 Score=29.98 Aligned_cols=70 Identities=11% Similarity=0.062 Sum_probs=43.2
Q ss_pred ccccHHHHHHHHHHCCC-eeEEE-EecCCCCCcchHHHHHHHhhCCCCeEEEc---------chHHHHHHHcCCCCEEEE
Q 017312 185 GYGTALGVIRALHSEGV-LERAY-CSETRPFNQGSRLTAFELVHDRIPATLIA---------DSAAAALMKDGRVSAVIV 253 (373)
Q Consensus 185 g~~tal~~l~~a~~~g~-~~~V~-v~EsrP~~qG~rlta~~L~~~GI~vtlI~---------Dsa~~~~m~~~~vd~Viv 253 (373)
|.|+.+.-|..+++.|. ...|. |.=.+|...+ + ..+.|||+..++ |..+...+++.++|.+++
T Consensus 104 g~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~--~----A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivl 177 (292)
T 3lou_A 104 KLEHCLADLLFRWKMGELKMDIVGIVSNHPDFAP--L----AAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVIL 177 (292)
T ss_dssp SCCHHHHHHHHHHHHTSSCCEEEEEEESSSTTHH--H----HHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCcCHHHHHHHHHcCCCCcEEEEEEeCcHHHHH--H----HHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Confidence 45777776666666664 33433 3334554422 2 346899999886 345666777789999988
Q ss_pred cce-eEec
Q 017312 254 GAD-RVAA 260 (373)
Q Consensus 254 GAd-~I~~ 260 (373)
..= +|++
T Consensus 178 a~y~~il~ 185 (292)
T 3lou_A 178 ARYMQVLS 185 (292)
T ss_dssp SSCCSCCC
T ss_pred cCchhhCC
Confidence 654 4543
No 113
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=35.48 E-value=1.4e+02 Score=26.70 Aligned_cols=84 Identities=8% Similarity=0.047 Sum_probs=43.0
Q ss_pred HHHHHHHHHHCC-CeeEEEEecCCCCCcc-hHHHHHHHhhCCCCeEEEc-----chH-------------HHHHH-HcCC
Q 017312 189 ALGVIRALHSEG-VLERAYCSETRPFNQG-SRLTAFELVHDRIPATLIA-----DSA-------------AAALM-KDGR 247 (373)
Q Consensus 189 al~~l~~a~~~g-~~~~V~v~EsrP~~qG-~rlta~~L~~~GI~vtlI~-----Dsa-------------~~~~m-~~~~ 247 (373)
+..+...++..| +++-|.- |+..- .++....|.+.||+|.... |.. +..++ ..++
T Consensus 105 ~~A~~~al~~~g~~rvgllt----py~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (240)
T 3ixl_A 105 STAVLNGLRALGVRRVALAT----AYIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPD 180 (240)
T ss_dssp HHHHHHHHHHTTCSEEEEEE----SSCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHhCCCEEEEEe----CChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCC
Confidence 344455555555 3444442 34322 2233456888999876543 211 11113 4466
Q ss_pred CCEEEEcceeEecCCCeecccchHH-HHHHHHhCCCeEEE
Q 017312 248 VSAVIVGADRVAANGDTANKIGTYS-LALCAKFHNILFYV 286 (373)
Q Consensus 248 vd~VivGAd~I~~nG~v~nkiGT~~-lA~~Ak~~~vPvyV 286 (373)
+|.|++|+--+ .++. +.-+-++.|+||+=
T Consensus 181 adaivL~CT~l----------~~l~~i~~le~~lg~PVid 210 (240)
T 3ixl_A 181 SDGILLSSGGL----------LTLDAIPEVERRLGVPVVS 210 (240)
T ss_dssp CSEEEEECTTS----------CCTTHHHHHHHHHSSCEEE
T ss_pred CCEEEEeCCCC----------chhhhHHHHHHHhCCCEEe
Confidence 77777775322 3333 34455667888864
No 114
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=35.17 E-value=64 Score=25.46 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=43.2
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHH---cCCCCEEEEcceeEecCCCeeccc
Q 017312 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMK---DGRVSAVIVGADRVAANGDTANKI 268 (373)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~---~~~vd~VivGAd~I~~nG~v~nki 268 (373)
+.+.+.++|. +|++.|..|. + ..++.+.|+++.. .|..-...++ -.++|.|++... +.-
T Consensus 21 la~~L~~~g~--~V~~id~~~~----~--~~~~~~~~~~~~~-gd~~~~~~l~~~~~~~~d~vi~~~~---------~~~ 82 (141)
T 3llv_A 21 LVRELTAAGK--KVLAVDKSKE----K--IELLEDEGFDAVI-ADPTDESFYRSLDLEGVSAVLITGS---------DDE 82 (141)
T ss_dssp HHHHHHHTTC--CEEEEESCHH----H--HHHHHHTTCEEEE-CCTTCHHHHHHSCCTTCSEEEECCS---------CHH
T ss_pred HHHHHHHCCC--eEEEEECCHH----H--HHHHHHCCCcEEE-CCCCCHHHHHhCCcccCCEEEEecC---------CHH
Confidence 4455666665 5666676542 2 3456677876544 3333222222 146777776443 223
Q ss_pred chHHHHHHHHhCCCeEEEe
Q 017312 269 GTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 269 GT~~lA~~Ak~~~vPvyV~ 287 (373)
....++..||+.+.+.+++
T Consensus 83 ~n~~~~~~a~~~~~~~iia 101 (141)
T 3llv_A 83 FNLKILKALRSVSDVYAIV 101 (141)
T ss_dssp HHHHHHHHHHHHCCCCEEE
T ss_pred HHHHHHHHHHHhCCceEEE
Confidence 3466788888887554443
No 115
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=35.16 E-value=75 Score=23.55 Aligned_cols=77 Identities=12% Similarity=0.081 Sum_probs=47.0
Q ss_pred eEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHH-HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHh--
Q 017312 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF-- 279 (373)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~-~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~-- 279 (373)
.+|.++|..|... +.....|.+.|+.+....+..- -..+++...|.|++..+- .+ ..-|--.+..+-+.
T Consensus 6 ~~ilivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~--~~----~~~g~~~~~~l~~~~~ 77 (127)
T 2gkg_A 6 KKILIVESDTALS--ATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDL--SA----GQNGYLICGKLKKDDD 77 (127)
T ss_dssp CEEEEECSCHHHH--HHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBC--GG----GCBHHHHHHHHHHSTT
T ss_pred CeEEEEeCCHHHH--HHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCC--CC----CCCHHHHHHHHhcCcc
Confidence 4788888877643 2335568888998887766443 234455679999887642 20 11233333344333
Q ss_pred -CCCeEEEe
Q 017312 280 -HNILFYVA 287 (373)
Q Consensus 280 -~~vPvyV~ 287 (373)
.++|++++
T Consensus 78 ~~~~~ii~~ 86 (127)
T 2gkg_A 78 LKNVPIVII 86 (127)
T ss_dssp TTTSCEEEE
T ss_pred ccCCCEEEE
Confidence 57999988
No 116
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=34.95 E-value=2e+02 Score=24.06 Aligned_cols=33 Identities=3% Similarity=-0.062 Sum_probs=23.7
Q ss_pred HHHHhhCCCCeEEEcchHHHHHHHcCC---CCEEEEcc
Q 017312 221 AFELVHDRIPATLIADSAAAALMKDGR---VSAVIVGA 255 (373)
Q Consensus 221 a~~L~~~GI~vtlI~Dsa~~~~m~~~~---vd~VivGA 255 (373)
++.+++.|+++..|+++.-+.+- +. +|.+|.-.
T Consensus 133 ~~~ak~~g~~vI~IT~~~~s~La--~~~~~ad~~l~~~ 168 (199)
T 1x92_A 133 IQAAHDREMLVVALTGRDGGGMA--SLLLPEDVEIRVP 168 (199)
T ss_dssp HHHHHHTTCEEEEEECTTCHHHH--HHCCTTCEEEECS
T ss_pred HHHHHHCCCEEEEEECCCCCcHH--hccccCCEEEEeC
Confidence 55677899999999987655554 44 78776543
No 117
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=34.45 E-value=66 Score=25.04 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=28.7
Q ss_pred HHHHHHcCCCCEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCeEEEe
Q 017312 239 AAALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 239 ~~~~m~~~~vd~VivGAd~I~~nG~v~n-kiGT~~lA~~Ak~~~vPvyV~ 287 (373)
+..+.++.++|.+++|+.+ +| +-. -.|+-.-. +.++-++||+|+
T Consensus 98 I~~~a~~~~~dliV~G~~~---~~-~~~~~~Gs~~~~-v~~~~~~pVlvv 142 (143)
T 3fdx_A 98 ILALAKSLPADLVIIASHR---PD-ITTYLLGSNAAA-VVRHAECSVLVV 142 (143)
T ss_dssp HHHHHHHTTCSEEEEESSC---TT-CCSCSSCHHHHH-HHHHCSSEEEEE
T ss_pred HHHHHHHhCCCEEEEeCCC---CC-CeeeeeccHHHH-HHHhCCCCEEEe
Confidence 3344455699999999974 33 332 24655444 456778999986
No 118
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=34.09 E-value=63 Score=32.81 Aligned_cols=176 Identities=14% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC--eeEEEEecCCCCCcchHHHHHHHhhC
Q 017312 150 NKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV--LERAYCSETRPFNQGSRLTAFELVHD 227 (373)
Q Consensus 150 ~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~--~~~V~v~EsrP~~qG~rlta~~L~~~ 227 (373)
.+.|+.+++++|. +|.++-+ |.|....+...+.+.+. .+.++. |.-... +..+.-....-.
T Consensus 288 ~~~Ia~~~A~~i~-----dG~~v~l----------GiGiP~av~~~l~~~~~~~~l~~~~-E~G~~g-~~~~~g~~~g~~ 350 (531)
T 2ahu_A 288 RKLVARRALFEMR-----KGAVGNV----------GVGIADGIGLVAREEGCADDFILTV-ETGPIG-GITSQGIAFGAN 350 (531)
T ss_dssp HHHHHHHHHTTCC-----TTCEEEE----------CSSTTTTHHHHHHHHTCGGGSEEBC-TTSEES-CBCC-----CCC
T ss_pred HHHHHHHHHHhcc-----CCCEEEe----------cCcHHHHHHHHHHhcCCCCCeEEEE-ccceec-CccCCCccceeE
Q ss_pred CCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeeccc------chHHHHHHHHhCCCeEEEeccCcc-ccCCCCCC
Q 017312 228 RIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKI------GTYSLALCAKFHNILFYVAAPLTS-IDLTLSSG 300 (373)
Q Consensus 228 GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nki------GT~~lA~~Ak~~~vPvyV~a~~~k-~~~~~~~~ 300 (373)
--+-.++..+....+++...+|..|+||=-|-.+|.+.+.. |+-.-.=.+.-.+.-+++..-+.| +......|
T Consensus 351 ~~~~~~~~~~~~f~~~~~g~vdvailga~eVD~~Gnvn~~~~G~~~~G~GG~~D~~~gA~~~i~~~~~t~~g~~~~~~~g 430 (531)
T 2ahu_A 351 VNTRAILDMTSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFIDISATSKKIIFCGTLTAGSLKTEIADG 430 (531)
T ss_dssp BSCSEECCHHHHHHHHHTTCCSEEEEECSEEETTSCEECSEETTEECBCTTHHHHHTTCSEEEEECCSEESSCEEEECSS
T ss_pred ECHHHhcchhhhhheecCCCeEEEEeChHHhCCCCcchhhccCCceecCCcchhhhcCCCeEEEEeccccCCceeeecCC
Q ss_pred CccccccCCcccceeccCCCCccccCCCce-eecceeeecCCCCccEEEeCCCCc
Q 017312 301 QEIVIEERSAKELLCSRGGLGEQVAASGIS-VWNPAFDVTPANLITGIITEKGVV 354 (373)
Q Consensus 301 ~~i~ie~r~~~ev~~~~~~~g~~~~~~~~~-v~np~fDvtP~~lIt~iITE~Gi~ 354 (373)
.-....++....+. +.++ +--+....++-.-++.||||+|++
T Consensus 431 ~l~i~~eg~~~kiV------------~~v~~v~~~G~~~~~~~~v~~vVTE~gV~ 473 (531)
T 2ahu_A 431 KLNIVQEGRVKKFI------------RELPEITFSGKIALERGLDVRYITERAVF 473 (531)
T ss_dssp CEEEEECCSEESEE------------SCCSSCSBCHHHHHHTTCEEEEECSSEEE
T ss_pred eEEEeccCCCceEC------------CCCccCCCCCcccccCCCcEEEECCCEEE
No 119
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=33.76 E-value=1.4e+02 Score=23.28 Aligned_cols=83 Identities=13% Similarity=0.126 Sum_probs=50.1
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHhhCCC--CeEEEcchHHHH-HH---------HcCCCCEEEEcceeEecCCCeeccc
Q 017312 201 VLERAYCSETRPFNQGSRLTAFELVHDRI--PATLIADSAAAA-LM---------KDGRVSAVIVGADRVAANGDTANKI 268 (373)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~~L~~~GI--~vtlI~Dsa~~~-~m---------~~~~vd~VivGAd~I~~nG~v~nki 268 (373)
...+|.++|..|... +.....|.+.|. .+....+..-+. .+ +....|.||+..+- .+ .-
T Consensus 3 ~~~~ILivddd~~~~--~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l--~~-----~~ 73 (152)
T 3heb_A 3 LSVTIVMIEDDLGHA--RLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNL--PD-----MT 73 (152)
T ss_dssp --CEEEEECCCHHHH--HHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBC--SS-----SB
T ss_pred CCceEEEEeCCHHHH--HHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCC--CC-----Cc
Confidence 356888888887653 234567888898 677766654332 23 25678999887642 22 22
Q ss_pred chHHHHHHHH---hCCCeEEEeccCcc
Q 017312 269 GTYSLALCAK---FHNILFYVAAPLTS 292 (373)
Q Consensus 269 GT~~lA~~Ak---~~~vPvyV~a~~~k 292 (373)
|--.+..+-+ ..++|+++++....
T Consensus 74 g~~~~~~lr~~~~~~~~pii~~t~~~~ 100 (152)
T 3heb_A 74 GIDILKLVKENPHTRRSPVVILTTTDD 100 (152)
T ss_dssp HHHHHHHHHHSTTTTTSCEEEEESCCC
T ss_pred HHHHHHHHHhcccccCCCEEEEecCCC
Confidence 3333333333 35799999876543
No 120
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=33.73 E-value=1.5e+02 Score=27.45 Aligned_cols=54 Identities=19% Similarity=0.019 Sum_probs=32.6
Q ss_pred cEEEEecCCCcccccccc-cHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcc
Q 017312 170 FSVLTHCNTGSLATAGYG-TALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD 236 (373)
Q Consensus 170 ~~ILT~~~sgslat~g~~-tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~D 236 (373)
..||..+.. +.|+- .++.+.+.+.++|....|+..+. + ...+...|+++..++.
T Consensus 21 MrIl~~~~~----~~Gh~~~~~~la~~L~~~GheV~v~~~~~--------~-~~~~~~~g~~~~~~~~ 75 (412)
T 3otg_A 21 MRVLFASLG----THGHTYPLLPLATAARAAGHEVTFATGEG--------F-AGTLRKLGFEPVATGM 75 (412)
T ss_dssp CEEEEECCS----SHHHHGGGHHHHHHHHHTTCEEEEEECGG--------G-HHHHHHTTCEEEECCC
T ss_pred eEEEEEcCC----CcccHHHHHHHHHHHHHCCCEEEEEccHH--------H-HHHHHhcCCceeecCc
Confidence 677766532 11221 23456677777888777775431 2 3346778999888874
No 121
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=33.43 E-value=3.9e+02 Score=26.88 Aligned_cols=121 Identities=12% Similarity=0.113 Sum_probs=72.4
Q ss_pred HHHHH--hHhhhcCCCcEEEEecCCCccccccccc-HH-HHHHHHHHCC-CeeEEEEecCCCCCcch----------HH-
Q 017312 156 YGASF--LQNQLKNSKFSVLTHCNTGSLATAGYGT-AL-GVIRALHSEG-VLERAYCSETRPFNQGS----------RL- 219 (373)
Q Consensus 156 ~g~~~--i~~~~~~~~~~ILT~~~sgslat~g~~t-al-~~l~~a~~~g-~~~~V~v~EsrP~~qG~----------rl- 219 (373)
.++++ |+ +|++|..++.+ |... ++ .++....+++ ++++++..-..+...|. |+
T Consensus 54 EAv~~~~Ik-----dG~tV~~gGf~------g~P~~l~~~Li~AL~~r~~kdLtli~~s~g~~~~~l~~~~~~g~v~r~~ 122 (519)
T 2hj0_A 54 EAIEKTRLK-----DGMTISFHHHF------REGDYVMNMVLDEIAKMGIKDISIAPSSIANVHEPLIDHIKNGVVTNIT 122 (519)
T ss_dssp HHHHHTTCC-----TTCEEEECCTT------GGGBCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHHHTTSEEEEE
T ss_pred HHHhcCCCC-----CCCEEEECCcc------CCchHHHHHHHHHHHhcCCCCeEEEeecCCCcchhHHhHhhcCcEEEEE
Confidence 34556 77 89999998765 2333 22 4455555544 46777765222221110 00
Q ss_pred ------HHHHHhhCC---CCeEEEcchHHHHHHHc--CCCCEEEEcceeEecCCCee---ccc--chHHHHHHHHhCCCe
Q 017312 220 ------TAFELVHDR---IPATLIADSAAAALMKD--GRVSAVIVGADRVAANGDTA---NKI--GTYSLALCAKFHNIL 283 (373)
Q Consensus 220 ------ta~~L~~~G---I~vtlI~Dsa~~~~m~~--~~vd~VivGAd~I~~nG~v~---nki--GT~~lA~~Ak~~~vP 283 (373)
..+++...| +|+.|-......+++.+ -.+|..++.|...-.+|.+. .+. |+...+.++.....-
T Consensus 123 ~~~~g~~~r~~i~~G~~~~P~~l~~~gG~~~ll~~~~l~~DVAlI~as~aD~~Gnls~~~g~s~~~s~~~~~~~a~~A~~ 202 (519)
T 2hj0_A 123 SSGLRDKVGAAISEGIMENPVIIRSHGGRARAIATDDIHIDVAFLGAPSSDAYGNANGTRGKTTCGSLGYAMIDAKYADQ 202 (519)
T ss_dssp ESBCHHHHHHHHHTTCCSSCEEECCHHHHHHHHHHTSSCCSEEEEEESEECTTSCEESSSSSSCCSCCHHHHHHHHHCSE
T ss_pred ecCCCcHHHHHHHCCCCCCCceeeccCCHHHHHhcCCCCCcEEEEEecccCCCCcEEEecCccccccchhhHHHHhhCCE
Confidence 123445555 47766543446777752 57999999999999999876 333 456777777777776
Q ss_pred EEEe
Q 017312 284 FYVA 287 (373)
Q Consensus 284 vyV~ 287 (373)
|++-
T Consensus 203 VIaE 206 (519)
T 2hj0_A 203 VVIV 206 (519)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
No 122
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=33.09 E-value=1.5e+02 Score=22.07 Aligned_cols=79 Identities=15% Similarity=0.074 Sum_probs=46.1
Q ss_pred eEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHH-HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHh-C
Q 017312 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF-H 280 (373)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~-~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~-~ 280 (373)
.+|.++|..|... +.....|...|..+....+..- -..+++...|.|++..+ +++. -|.-.+..+.+. .
T Consensus 4 ~~ilivdd~~~~~--~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~ 74 (126)
T 1dbw_A 4 YTVHIVDDEEPVR--KSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLR--MPDM-----SGVELLRNLGDLKI 74 (126)
T ss_dssp CEEEEEESSHHHH--HHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECC--STTS-----CHHHHHHHHHHTTC
T ss_pred CEEEEEcCCHHHH--HHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEECC--CCCC-----CHHHHHHHHHhcCC
Confidence 4677777776543 1234467778988876655432 23455567888887543 2322 243333334333 4
Q ss_pred CCeEEEeccC
Q 017312 281 NILFYVAAPL 290 (373)
Q Consensus 281 ~vPvyV~a~~ 290 (373)
++|+++++..
T Consensus 75 ~~~ii~~s~~ 84 (126)
T 1dbw_A 75 NIPSIVITGH 84 (126)
T ss_dssp CCCEEEEECT
T ss_pred CCCEEEEECC
Confidence 7999998654
No 123
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=32.97 E-value=1.7e+02 Score=22.73 Aligned_cols=46 Identities=13% Similarity=0.232 Sum_probs=27.1
Q ss_pred HHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEec
Q 017312 239 AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (373)
Q Consensus 239 ~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (373)
+..+.++.++|.+++|+..- +| +---.|+..-.+ .++-.+||+|+=
T Consensus 101 I~~~a~~~~~dliV~G~~~~--~~-~~~~~Gs~~~~v-l~~~~~pVlvv~ 146 (150)
T 3tnj_A 101 IIRIAEQENVDLIVVGSHGR--HG-LALLLGSTANSV-LHYAKCDVLAVR 146 (150)
T ss_dssp HHHHHHHTTCSEEEEEEC-----------CCCHHHHH-HHHCSSEEEEEE
T ss_pred HHHHHHHcCCCEEEEecCCC--CC-cCeEecchHHHH-HHhCCCCEEEEe
Confidence 33444456999999999864 22 223457665555 455679999973
No 124
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=32.76 E-value=1.1e+02 Score=25.92 Aligned_cols=81 Identities=7% Similarity=-0.004 Sum_probs=50.1
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHhhCCC-CeEEEcchHHHH-HHHc-------------CCCCEEEEcceeEecCCCee
Q 017312 201 VLERAYCSETRPFNQGSRLTAFELVHDRI-PATLIADSAAAA-LMKD-------------GRVSAVIVGADRVAANGDTA 265 (373)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~~L~~~GI-~vtlI~Dsa~~~-~m~~-------------~~vd~VivGAd~I~~nG~v~ 265 (373)
...+|.++|..|... ++....|.+.|+ .|....+..-+. .+++ ..+|.||+... +++.
T Consensus 60 ~~~~ILiVdDd~~~~--~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~--lp~~--- 132 (206)
T 3mm4_A 60 RGKRVLVVDDNFISR--KVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQ--MPEM--- 132 (206)
T ss_dssp TTCEEEEECSCHHHH--HHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESC--CSSS---
T ss_pred CCCEEEEEeCCHHHH--HHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCC--CCCC---
Confidence 356899999887653 344567888998 677766654332 2332 27999988653 2332
Q ss_pred cccchHHHHHHHHh-----CCCeEEEeccC
Q 017312 266 NKIGTYSLALCAKF-----HNILFYVAAPL 290 (373)
Q Consensus 266 nkiGT~~lA~~Ak~-----~~vPvyV~a~~ 290 (373)
-|--.+..+-+. ..+|+++++..
T Consensus 133 --~G~el~~~lr~~~~~~~~~~piI~ls~~ 160 (206)
T 3mm4_A 133 --DGYEATREIRKVEKSYGVRTPIIAVSGH 160 (206)
T ss_dssp --CHHHHHHHHHHHHHTTTCCCCEEEEESS
T ss_pred --CHHHHHHHHHhhhhhcCCCCcEEEEECC
Confidence 244444444432 67999998764
No 125
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=32.67 E-value=2.1e+02 Score=26.63 Aligned_cols=81 Identities=21% Similarity=0.248 Sum_probs=46.8
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchH----------------------HHHHHHcC
Q 017312 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA----------------------AAALMKDG 246 (373)
Q Consensus 189 al~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa----------------------~~~~m~~~ 246 (373)
++.+.+.+.++|.....+.+ .| |.+ ...+.+.|+++..|+-.. +..++++.
T Consensus 19 alala~~L~~~g~~V~~vg~-~~----g~e--~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (365)
T 3s2u_A 19 ALACAREFQARGYAVHWLGT-PR----GIE--NDLVPKAGLPLHLIQVSGLRGKGLKSLVKAPLELLKSLFQALRVIRQL 91 (365)
T ss_dssp HHHHHHHHHHTTCEEEEEEC-SS----STH--HHHTGGGTCCEEECC--------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEEC-Cc----hHh--hchhhhcCCcEEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56666777777766544332 22 211 223456788887775321 12234556
Q ss_pred CCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 247 RVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 247 ~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
+.|.|+ ..|+.+ +.+..++|+..++|+++-
T Consensus 92 ~PDvVi-------~~g~~~----s~p~~laA~~~~iP~vih 121 (365)
T 3s2u_A 92 RPVCVL-------GLGGYV----TGPGGLAARLNGVPLVIH 121 (365)
T ss_dssp CCSEEE-------ECSSST----HHHHHHHHHHTTCCEEEE
T ss_pred CCCEEE-------EcCCcc----hHHHHHHHHHcCCCEEEE
Confidence 777663 344432 456678899999999973
No 126
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=32.64 E-value=1.1e+02 Score=22.49 Aligned_cols=78 Identities=9% Similarity=0.021 Sum_probs=45.9
Q ss_pred EEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHH-HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHH-HhCC
Q 017312 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA-KFHN 281 (373)
Q Consensus 204 ~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~-~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~A-k~~~ 281 (373)
+|.++|..|... ......|...|..+....+..- -..+++...|.+++..+ ++++ -|--.+..+- +..+
T Consensus 2 ~ilivdd~~~~~--~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~-----~g~~~~~~l~~~~~~ 72 (121)
T 2pl1_A 2 RVLVVEDNALLR--HHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLG--LPDE-----DGLSLIRRWRSNDVS 72 (121)
T ss_dssp EEEEECSCHHHH--HHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSS-----CHHHHHHHHHHTTCC
T ss_pred eEEEEeCcHHHH--HHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCC-----CHHHHHHHHHhcCCC
Confidence 577777776542 2234567888998887776543 33455678999988654 2322 1322222222 2357
Q ss_pred CeEEEeccC
Q 017312 282 ILFYVAAPL 290 (373)
Q Consensus 282 vPvyV~a~~ 290 (373)
+|+++++..
T Consensus 73 ~~ii~~s~~ 81 (121)
T 2pl1_A 73 LPILVLTAR 81 (121)
T ss_dssp SCEEEEESC
T ss_pred CCEEEEecC
Confidence 899987653
No 127
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=32.38 E-value=3e+02 Score=25.26 Aligned_cols=87 Identities=9% Similarity=0.000 Sum_probs=47.4
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcc--------hHHHHHHHcCCCCEEEEcceeEecCCC
Q 017312 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD--------SAAAALMKDGRVSAVIVGADRVAANGD 263 (373)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~D--------sa~~~~m~~~~vd~VivGAd~I~~nG~ 263 (373)
+++.+.+.| -+|++.+ |.+.|.. ....+...|+++..++- ..+-..+.+.++..|++-. -=...|.
T Consensus 78 ~~~~l~~~g--d~Vl~~~--~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~-~~nptG~ 151 (416)
T 3isl_A 78 VLASVIEPE--DDVLIPI--YGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVH-GETSTGR 151 (416)
T ss_dssp HHHHHCCTT--CEEEEEE--SSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEES-EETTTTE
T ss_pred HHHHhcCCC--CEEEEec--CCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEc-cCCCCce
Confidence 344443333 3566554 4443422 23345677888877752 2334445334565554432 2223454
Q ss_pred eecccchHHHHHHHHhCCCeEEEe
Q 017312 264 TANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 264 v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
+.. --.++-+|++||+++++=
T Consensus 152 ~~~---l~~i~~l~~~~~~~li~D 172 (416)
T 3isl_A 152 IHP---LKAIGEACRTEDALFIVD 172 (416)
T ss_dssp ECC---CHHHHHHHHHTTCEEEEE
T ss_pred ecC---HHHHHHHHHHcCCEEEEE
Confidence 443 356888999999998873
No 128
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=32.29 E-value=93 Score=30.63 Aligned_cols=95 Identities=18% Similarity=0.140 Sum_probs=55.9
Q ss_pred HHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCC---CeeEEEEecC-----------------CCCCc
Q 017312 156 YGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEG---VLERAYCSET-----------------RPFNQ 215 (373)
Q Consensus 156 ~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g---~~~~V~v~Es-----------------rP~~q 215 (373)
.++++|+ +|++|..++.+ +....+++...+++ ++++++..-+ +|++-
T Consensus 11 eAv~~Ik-----dG~tI~~ggf~--------g~P~~Li~AL~~r~~~~kdLtl~~~~s~g~~~~~~~~l~~~i~~~~~~~ 77 (436)
T 2oas_A 11 EAVSLIR-----SGETLWTHSMG--------ATPKVLLDALAKHALTLDNITLLQLHTEGAESLSHPSLLGHLRHRCFFG 77 (436)
T ss_dssp HHHTTCC-----TTCEEEECCBT--------TCCHHHHHHHHHHGGGCCSEEEEESSBSSCGGGGSGGGTTTEEEEESSC
T ss_pred HHHhhCC-----CCCEEEECCcc--------CcHHHHHHHHHHhhccCCCEEEEEecccCChhhhHHHhcCcEEEeecCC
Confidence 4556677 99999987654 33444454444432 5788876311 12222
Q ss_pred chHHHHHHHhhCC-CCeEEEcchHHHHHHHc--CCCCEEEEcceeEecCCCee
Q 017312 216 GSRLTAFELVHDR-IPATLIADSAAAALMKD--GRVSAVIVGADRVAANGDTA 265 (373)
Q Consensus 216 G~rlta~~L~~~G-I~vtlI~Dsa~~~~m~~--~~vd~VivGAd~I~~nG~v~ 265 (373)
|..+ + ++.+.| ++.+-+--+.+..++.. -++|..++.|...-.+|.+.
T Consensus 78 ~~~l-r-~~i~~G~~~y~P~~ls~~~~~l~~~~l~~DVAlI~as~aD~~Gn~s 128 (436)
T 2oas_A 78 GVPT-R-PLLQSGDADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPPDKHGMCS 128 (436)
T ss_dssp CTTT-H-HHHHTTSSEECCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTCEEE
T ss_pred CHHH-H-HHHHcCCCeeeCCccccHHHHHHcCCCCCCEEEEEeccCCCCceEE
Confidence 2222 3 344444 44444444556555543 46899999999988889764
No 129
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=32.25 E-value=23 Score=32.98 Aligned_cols=95 Identities=12% Similarity=0.057 Sum_probs=58.6
Q ss_pred ccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCC--e
Q 017312 187 GTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGD--T 264 (373)
Q Consensus 187 ~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~--v 264 (373)
..+..+++.+.+.|.+.-|+.++.-|..+-.++ .....+.|+ .++-.|..+.+- +...+.-.....+..-|. +
T Consensus 81 ~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l-~~~A~~~gi--~viGPNc~Gii~--~~~~~~~~~~~~~~~~G~va~ 155 (294)
T 2yv1_A 81 PFAKDAVFEAIDAGIELIVVITEHIPVHDTMEF-VNYAEDVGV--KIIGPNTPGIAS--PKVGKLGIIPMEVLKEGSVGM 155 (294)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHH-HHHHHHHTC--EEECSSCCEEEE--TTTEEEECCCGGGCCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHHHHHcCC--EEEcCCCceeec--cCcceeeecccCCCCCCCEEE
Confidence 457788899988898776777776665443344 334455665 466555555433 333333222233344564 6
Q ss_pred ecccchHHHHH--HHHhCCCeEEE
Q 017312 265 ANKIGTYSLAL--CAKFHNILFYV 286 (373)
Q Consensus 265 ~nkiGT~~lA~--~Ak~~~vPvyV 286 (373)
+.+.||...++ .+...|+.|--
T Consensus 156 vSqSG~l~~~~~~~~~~~g~G~s~ 179 (294)
T 2yv1_A 156 VSRSGTLTYEIAHQIKKAGFGVST 179 (294)
T ss_dssp EESCSHHHHHHHHHHHHTTCCEEE
T ss_pred EECCHHHHHHHHHHHHhCCCCeEE
Confidence 89999998877 56677888764
No 130
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=32.22 E-value=64 Score=31.45 Aligned_cols=86 Identities=20% Similarity=0.149 Sum_probs=51.3
Q ss_pred ccccHH-HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHc---CCCCEEEEcceeEec
Q 017312 185 GYGTAL-GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKD---GRVSAVIVGADRVAA 260 (373)
Q Consensus 185 g~~tal-~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~---~~vd~VivGAd~I~~ 260 (373)
|||.+- .+.+.+.+.|. .|+++|..|. + ..++.+.|+++.+- |..=..++++ .+++.||+..+
T Consensus 11 G~Gr~G~~va~~L~~~g~--~vvvId~d~~----~--v~~~~~~g~~vi~G-Dat~~~~L~~agi~~A~~viv~~~---- 77 (413)
T 3l9w_A 11 GFGRFGQITGRLLLSSGV--KMVVLDHDPD----H--IETLRKFGMKVFYG-DATRMDLLESAGAAKAEVLINAID---- 77 (413)
T ss_dssp CCSHHHHHHHHHHHHTTC--CEEEEECCHH----H--HHHHHHTTCCCEES-CTTCHHHHHHTTTTTCSEEEECCS----
T ss_pred CCCHHHHHHHHHHHHCCC--CEEEEECCHH----H--HHHHHhCCCeEEEc-CCCCHHHHHhcCCCccCEEEECCC----
Confidence 456553 34466666664 5677787654 2 34677889987553 4333233322 56777776554
Q ss_pred CCCeecccchHHHHHHHHhCCC--eEEEec
Q 017312 261 NGDTANKIGTYSLALCAKFHNI--LFYVAA 288 (373)
Q Consensus 261 nG~v~nkiGT~~lA~~Ak~~~v--PvyV~a 288 (373)
+..-+..++..||+++. ++++-+
T Consensus 78 -----~~~~n~~i~~~ar~~~p~~~Iiara 102 (413)
T 3l9w_A 78 -----DPQTNLQLTEMVKEHFPHLQIIARA 102 (413)
T ss_dssp -----SHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred -----ChHHHHHHHHHHHHhCCCCeEEEEE
Confidence 24556778888998875 455443
No 131
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=32.07 E-value=1.5e+02 Score=25.08 Aligned_cols=82 Identities=12% Similarity=0.029 Sum_probs=51.1
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH-HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHH-h
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-F 279 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak-~ 279 (373)
..+|.++|..|... ......|...|+.|....+..-+ ..+++...|.||+..+- ++. -|--.+..+-+ .
T Consensus 7 ~~~ilivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l--~~~-----~g~~~~~~l~~~~ 77 (233)
T 1ys7_A 7 SPRVLVVDDDSDVL--ASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINM--PVL-----DGVSVVTALRAMD 77 (233)
T ss_dssp CCEEEEECSCHHHH--HHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESSC--SSS-----CHHHHHHHHHHTT
T ss_pred CCeEEEEeCCHHHH--HHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCC--CCC-----CHHHHHHHHHhcC
Confidence 46889999888653 22345678889988866655432 33456789999886542 222 24333333333 3
Q ss_pred CCCeEEEeccCcc
Q 017312 280 HNILFYVAAPLTS 292 (373)
Q Consensus 280 ~~vPvyV~a~~~k 292 (373)
.++|+++++....
T Consensus 78 ~~~~ii~lt~~~~ 90 (233)
T 1ys7_A 78 NDVPVCVLSARSS 90 (233)
T ss_dssp CCCCEEEEECCCT
T ss_pred CCCCEEEEEcCCC
Confidence 5899999876544
No 132
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=31.98 E-value=55 Score=25.07 Aligned_cols=86 Identities=7% Similarity=0.106 Sum_probs=48.5
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchH-HHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHH-h
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA-AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-F 279 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa-~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak-~ 279 (373)
..+|.++|..|... +.....|.+.|+.|....+.. +-..+++...|.||+..+- ..+..-..-|--.+..+-+ .
T Consensus 3 ~~~ilivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~--~~~~~~~~~g~~~~~~l~~~~ 78 (140)
T 2qr3_A 3 LGTIIIVDDNKGVL--TAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNF--TSGINNGNEGLFWLHEIKRQY 78 (140)
T ss_dssp CCEEEEECSCHHHH--HHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTT--TC-----CCHHHHHHHHHHHC
T ss_pred CceEEEEeCCHHHH--HHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCc--CCCCCCCccHHHHHHHHHhhC
Confidence 35788888777643 223556888899888666543 3344556778988886542 1000001123333333333 3
Q ss_pred CCCeEEEeccCc
Q 017312 280 HNILFYVAAPLT 291 (373)
Q Consensus 280 ~~vPvyV~a~~~ 291 (373)
.++|+++++...
T Consensus 79 ~~~~ii~ls~~~ 90 (140)
T 2qr3_A 79 RDLPVVLFTAYA 90 (140)
T ss_dssp TTCCEEEEEEGG
T ss_pred cCCCEEEEECCC
Confidence 479999987643
No 133
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=31.46 E-value=29 Score=32.42 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=62.8
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCC
Q 017312 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVS 249 (373)
Q Consensus 170 ~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd 249 (373)
|.++.+-+. ..+..+++.+.+.|.+.-|++++.-|..+-.++ ...+.+.|+ .++-.|..+.+- +...
T Consensus 73 DvaIi~vp~--------~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l-~~~A~~~gi--~viGPNc~Gii~--~~~~ 139 (297)
T 2yv2_A 73 NTSIVFVPA--------PFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRF-VNYARQKGA--TIIGPNCPGAIT--PGQA 139 (297)
T ss_dssp CEEEECCCG--------GGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHH-HHHHHHHTC--EEECSSSCEEEE--TTTE
T ss_pred CEEEEecCH--------HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHHHHHcCC--EEEcCCCCeeEc--cccc
Confidence 555555443 467888999988888777777776665443344 334555665 566566655443 3333
Q ss_pred EEEEcceeEecCCC--eecccchHHHHHH--HHhCCCeEEE
Q 017312 250 AVIVGADRVAANGD--TANKIGTYSLALC--AKFHNILFYV 286 (373)
Q Consensus 250 ~VivGAd~I~~nG~--v~nkiGT~~lA~~--Ak~~~vPvyV 286 (373)
+.-.....+..-|. ++.+.||...+++ +...|+.|--
T Consensus 140 ~~~~~~~~~~~~G~va~vSqSG~l~~~~~~~~~~~g~G~s~ 180 (297)
T 2yv2_A 140 KVGIMPGHIFKEGGVAVVSRSGTLTYEISYMLTRQGIGQST 180 (297)
T ss_dssp EEESCCGGGCCEEEEEEEESCHHHHHHHHHHHHHTTCCEEE
T ss_pred ceeecccCCCCCCCEEEEECCHHHHHHHHHHHHHcCCCeeE
Confidence 33222233344564 5899999987764 5667887753
No 134
>1to6_A Glycerate kinase; glycerate metabolism, structural genomics T831, PSI, protein structure initiative; 2.50A {Neisseria meningitidis serogroup A} SCOP: c.141.1.1
Probab=31.38 E-value=24 Score=34.40 Aligned_cols=48 Identities=15% Similarity=0.116 Sum_probs=34.8
Q ss_pred HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCccc
Q 017312 241 ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (373)
Q Consensus 241 ~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k~ 293 (373)
..+ .+.|.||.|=-++ |.....---...+|-.||. +|||+++|.+...
T Consensus 274 ~~l--~~ADLVITGEG~~--D~QT~~GK~p~gVa~~A~~-~~PviaiaG~~~~ 321 (371)
T 1to6_A 274 KKV--SDVDLVIVGEGRL--DRQSLAGKAPIGVAKRTPV-GVPVVAICGSLVE 321 (371)
T ss_dssp HHT--TTCSEEEECCSEE--CSTTTTTCHHHHHHTTSCT-TCCEEEEESEECT
T ss_pred HHh--cCCCEEEECCCCC--CCCCCCCcHHHHHHHHHhc-CCCEEEEeCCCCC
Confidence 445 8999999998766 2333333334677888999 9999999987653
No 135
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=31.35 E-value=65 Score=29.89 Aligned_cols=96 Identities=10% Similarity=0.065 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC--CCeeEEEEecC------CCCCcchHHHH
Q 017312 150 NKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE--GVLERAYCSET------RPFNQGSRLTA 221 (373)
Q Consensus 150 ~~~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~--g~~~~V~v~Es------rP~~qG~rlta 221 (373)
.+.|++.++++|.+.+. ++++|.. . +| +|...+.+..... .++.+|+-..+ .|..+... .+
T Consensus 92 k~~ia~~AA~~l~~~i~-~~~~igl-~-~G-------sT~~~~~~~L~~~~~~~~~~vv~l~ggl~~~~~~~~~~~~-i~ 160 (315)
T 2w48_A 92 LSAMGQHGALLVDRLLE-PGDIIGF-S-WG-------RAVRSLVENLPQRSQSRQVICVPIIGGPSGKLESRYHVNT-LT 160 (315)
T ss_dssp HHHHHHHHHHHHHHHCC-TTCEEEE-C-CS-------HHHHHHHTTSCCCSSCCCCEEEESBCBCTTSSCGGGCHHH-HH
T ss_pred HHHHHHHHHHHHHHhCC-CCCEEEE-C-Ch-------HHHHHHHHhhccccCCCCcEEEEcCCCCCCCCccccCHHH-HH
Confidence 45688888888665443 5666543 1 22 4667666655332 24577776643 22222222 35
Q ss_pred HHHhhC-CCCeEEE--c----chHHHHHHHc-----------CCCCEEEEcce
Q 017312 222 FELVHD-RIPATLI--A----DSAAAALMKD-----------GRVSAVIVGAD 256 (373)
Q Consensus 222 ~~L~~~-GI~vtlI--~----Dsa~~~~m~~-----------~~vd~VivGAd 256 (373)
+.|.+. |+++..+ | +......+.+ +++|+.|+|.-
T Consensus 161 ~~la~~~~~~~~~l~~P~~~~~~~~~~~l~~~~~~~~~l~~~~~~DiailGIG 213 (315)
T 2w48_A 161 YGAAARLKAESHLADFPALLDNPLIRNGIMQSQHFKTISSYWDSLDVALVGIG 213 (315)
T ss_dssp HHHHHHTTCEECCCCSBSBCSSHHHHHHHHHSHHHHHHHHHHTTCSEEEECCB
T ss_pred HHHHHHHCCceeEeeCCcccCCHHHHHHHHhChHHHHHHHHHhcCCEEEEccC
Confidence 566543 7665433 2 2222222222 69999999998
No 136
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=31.34 E-value=1.1e+02 Score=25.93 Aligned_cols=81 Identities=17% Similarity=0.089 Sum_probs=51.0
Q ss_pred eEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH-HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCC
Q 017312 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN 281 (373)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~ 281 (373)
.+|.++|..|.... .....|...|+.|....+..-+ ..+++...|.||+..+- ++. -|.-.+..+-+..+
T Consensus 5 ~~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l--~~~-----~g~~~~~~l~~~~~ 75 (230)
T 2oqr_A 5 TSVLIVEDEESLAD--PLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLML--PGM-----SGTDVCKQLRARSS 75 (230)
T ss_dssp CEEEEECSCHHHHH--HHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESSC--SSS-----CHHHHHHHHHHHCS
T ss_pred CeEEEEeCCHHHHH--HHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEECCC--CCC-----CHHHHHHHHHcCCC
Confidence 57888888876532 2345677889988866654332 33455678999886542 322 24444444444578
Q ss_pred CeEEEeccCcc
Q 017312 282 ILFYVAAPLTS 292 (373)
Q Consensus 282 vPvyV~a~~~k 292 (373)
+|+++++....
T Consensus 76 ~~ii~lt~~~~ 86 (230)
T 2oqr_A 76 VPVIMVTARDS 86 (230)
T ss_dssp CSEEEEECCHH
T ss_pred CCEEEEeCCCc
Confidence 99999876543
No 137
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=31.02 E-value=2.8e+02 Score=27.73 Aligned_cols=98 Identities=12% Similarity=0.111 Sum_probs=52.5
Q ss_pred HHHHHhHhhhcCCCcEEEEecCCCccccccccc-HHH-HHHHHHHCCCeeEEEEe-cCC-----------------CCCc
Q 017312 156 YGASFLQNQLKNSKFSVLTHCNTGSLATAGYGT-ALG-VIRALHSEGVLERAYCS-ETR-----------------PFNQ 215 (373)
Q Consensus 156 ~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~t-al~-~l~~a~~~g~~~~V~v~-Esr-----------------P~~q 215 (373)
.++++|+ +|++|..++.+|+ |.-. +.. +.+.+.++..+++++.. -.. |+..
T Consensus 20 EAv~~Ik-----dGdtV~~gGf~~~----G~P~~Li~AL~~r~~~~dl~Ltl~~~~~~g~~~~~~l~~~g~v~~~~~~~~ 90 (497)
T 2g39_A 20 EAADLIQ-----DGMTVGMSGFTRA----GEAKAVPQALAMRAKERPLRISLMTGASLGNDLDKQLTEAGVLARRMPFQV 90 (497)
T ss_dssp HHHTTCC-----TTCEEEECCBTTB----SCCCHHHHHHHHHHHHSCCCEEEECSSCCCTTHHHHHHHTTCEEEEESCCC
T ss_pred HHHhhCC-----CCCEEEECCCCCC----CCHHHHHHHHHHhhhcCCceEEEEecccccccchHHHhcCCceEEEEeeCC
Confidence 3456677 9999999865422 2333 222 23333222223555542 222 2323
Q ss_pred chHHHHHHHhhCCCCeEEEc--chHHHHHHHcC---CCCEEEEcceeEecCCCee
Q 017312 216 GSRLTAFELVHDRIPATLIA--DSAAAALMKDG---RVSAVIVGADRVAANGDTA 265 (373)
Q Consensus 216 G~rlta~~L~~~GI~vtlI~--Dsa~~~~m~~~---~vd~VivGAd~I~~nG~v~ 265 (373)
|.. .+++.+.|- +.+++ -+.+..++..+ ++|..++-|...-.+|.+.
T Consensus 91 ~~~--~r~~i~~G~-v~fvP~~ls~~~~~l~~~~l~~~DVAlI~as~aDe~Gnls 142 (497)
T 2g39_A 91 DST--LRKAINAGE-VMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAITEQGHIV 142 (497)
T ss_dssp CHH--HHHHHHTTS-SEECCCCTTTHHHHHHTTSSCCCSEEEEEESEECTTSCEE
T ss_pred CHH--HHHHHHcCC-CeEECCccccHHHHHHcCCcCCCCEEEEEecccCCCceEE
Confidence 332 234555563 23322 23445455443 6999999999999999864
No 138
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=30.96 E-value=2.7e+02 Score=24.28 Aligned_cols=31 Identities=13% Similarity=0.036 Sum_probs=24.5
Q ss_pred HHHHhhCCCCeEEEcchHHH-----------HHHHcCCCCEEEE
Q 017312 221 AFELVHDRIPATLIADSAAA-----------ALMKDGRVSAVIV 253 (373)
Q Consensus 221 a~~L~~~GI~vtlI~Dsa~~-----------~~m~~~~vd~Viv 253 (373)
++.+++.|+++..|++..-+ .+- ..+|.+|.
T Consensus 128 ~~~Ak~~G~~vI~IT~~~~s~~~~~~~~~g~~La--~~aD~~l~ 169 (243)
T 3cvj_A 128 AIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLY--EYADVVLD 169 (243)
T ss_dssp HHHHHHHTCEEEEEECHHHHHHSCCCSTTSCCGG--GGCSEEEE
T ss_pred HHHHHHCCCEEEEEeCCcccccccccCCCcCcHH--HhCCEEEE
Confidence 55678899999999998765 555 67888875
No 139
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=30.70 E-value=1.1e+02 Score=23.43 Aligned_cols=82 Identities=12% Similarity=0.000 Sum_probs=49.0
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH-HHHHc-CCCCEEEEcceeEecCCCeecccchHHHHHHH
Q 017312 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKD-GRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (373)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~-~~m~~-~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~A 277 (373)
....+|.++|..|... +.....|.+.|+.+....+..-+ ..+++ ...|.||+..+- .+. -|.-.+..+-
T Consensus 13 ~~~~~ilivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~l--~~~-----~g~~~~~~l~ 83 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHA--TLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQL--VDL-----SIFSLLDIVK 83 (138)
T ss_dssp -CCCEEEEECSCHHHH--HHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTC--TTS-----CHHHHHHHHT
T ss_pred CCCCeEEEECCCHHHH--HHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCCC--CCC-----CHHHHHHHHH
Confidence 4456788888877653 23355688889988877665433 34455 678999886532 221 2332333332
Q ss_pred H-hCCCeEEEec-cC
Q 017312 278 K-FHNILFYVAA-PL 290 (373)
Q Consensus 278 k-~~~vPvyV~a-~~ 290 (373)
+ ..++|+++++ ..
T Consensus 84 ~~~~~~~ii~ls~~~ 98 (138)
T 2b4a_A 84 EQTKQPSVLILTTGR 98 (138)
T ss_dssp TSSSCCEEEEEESCC
T ss_pred hhCCCCCEEEEECCC
Confidence 2 2479999987 43
No 140
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=30.58 E-value=96 Score=25.27 Aligned_cols=62 Identities=10% Similarity=0.145 Sum_probs=37.1
Q ss_pred HHhhCCCC-eEEEc--ch---HHHHHHHcCCCCEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCeEEEec
Q 017312 223 ELVHDRIP-ATLIA--DS---AAAALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVAA 288 (373)
Q Consensus 223 ~L~~~GI~-vtlI~--Ds---a~~~~m~~~~vd~VivGAd~I~~nG~v~n-kiGT~~lA~~Ak~~~vPvyV~a 288 (373)
.+.+.|++ +.... .+ .+..+.++.++|.|++|+..- |.+-. -.|+-.--+ .++-.+||+|+-
T Consensus 89 ~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~---~~~~~~~lGSva~~v-l~~a~~PVlvV~ 157 (163)
T 1tq8_A 89 RAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGL---STIAGRLLGSVPANV-SRRAKVDVLIVH 157 (163)
T ss_dssp HHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCC---CSHHHHHTBBHHHHH-HHHTTCEEEEEC
T ss_pred HHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCC---CcccceeeccHHHHH-HHhCCCCEEEEe
Confidence 35567888 65332 22 233333568999999999753 22222 256555444 455679999973
No 141
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=30.55 E-value=44 Score=25.73 Aligned_cols=83 Identities=11% Similarity=0.015 Sum_probs=50.7
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHhhCC-CCeEEEcchHHH-HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHH
Q 017312 200 GVLERAYCSETRPFNQGSRLTAFELVHDR-IPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (373)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~~L~~~G-I~vtlI~Dsa~~-~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~A 277 (373)
....+|.++|..|... ......|.+.| +.|....+..-+ ..+++..+|.||+..+ ++++ -|.-.+..+-
T Consensus 12 ~~~~~ilivdd~~~~~--~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~ 82 (135)
T 3snk_A 12 TKRKQVALFSSDPNFK--RDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLG--GGDL-----LGKPGIVEAR 82 (135)
T ss_dssp -CCEEEEEECSCHHHH--HHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEE--TTGG-----GGSTTHHHHH
T ss_pred CCCcEEEEEcCCHHHH--HHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCC--CCCc-----hHHHHHHHHH
Confidence 3457888888877653 23355688889 888866655432 2345678999988654 3322 2333333333
Q ss_pred Hh-CCCeEEEeccCc
Q 017312 278 KF-HNILFYVAAPLT 291 (373)
Q Consensus 278 k~-~~vPvyV~a~~~ 291 (373)
+. .++|+++++...
T Consensus 83 ~~~~~~~ii~~s~~~ 97 (135)
T 3snk_A 83 ALWATVPLIAVSDEL 97 (135)
T ss_dssp GGGTTCCEEEEESCC
T ss_pred hhCCCCcEEEEeCCC
Confidence 33 379999987643
No 142
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=30.54 E-value=1.5e+02 Score=24.80 Aligned_cols=81 Identities=14% Similarity=0.014 Sum_probs=49.8
Q ss_pred eEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH-HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHH-hC
Q 017312 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-FH 280 (373)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak-~~ 280 (373)
.+|.++|..|.... .....|...|..|....+..-+ ..+++...|.||+..+- +++ -|--.+..+-+ ..
T Consensus 3 ~~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l--~~~-----~g~~~~~~lr~~~~ 73 (225)
T 1kgs_A 3 VRVLVVEDERDLAD--LITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIML--PVH-----DGWEILKSMRESGV 73 (225)
T ss_dssp CEEEEECSSHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCC--SSS-----CHHHHHHHHHHTTC
T ss_pred ceEEEEeCCHHHHH--HHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCC--CCC-----CHHHHHHHHHhcCC
Confidence 46888888776532 2345677889988866654432 34556789999886542 322 24333333333 34
Q ss_pred CCeEEEeccCcc
Q 017312 281 NILFYVAAPLTS 292 (373)
Q Consensus 281 ~vPvyV~a~~~k 292 (373)
++|+++++....
T Consensus 74 ~~~ii~ls~~~~ 85 (225)
T 1kgs_A 74 NTPVLMLTALSD 85 (225)
T ss_dssp CCCEEEEESSCH
T ss_pred CCCEEEEeCCCC
Confidence 799999876543
No 143
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=30.45 E-value=1e+02 Score=27.12 Aligned_cols=89 Identities=9% Similarity=-0.025 Sum_probs=48.8
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEE--cc-hHHHHHHHcCCCCEEEEcceeEecCCCeeccc
Q 017312 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--AD-SAAAALMKDGRVSAVIVGADRVAANGDTANKI 268 (373)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI--~D-sa~~~~m~~~~vd~VivGAd~I~~nG~v~nki 268 (373)
+++.+.++....+|+++.-+|.. . .+|...++.+... .| ..+..++ .++|.|+--|-.- -+.-.|-.
T Consensus 16 l~~~L~~~~~g~~V~~~~r~~~~----~--~~l~~~~~~~~~~D~~d~~~l~~~~--~~~d~vi~~a~~~--~~~~~n~~ 85 (287)
T 2jl1_A 16 VIQHLLKKVPASQIIAIVRNVEK----A--STLADQGVEVRHGDYNQPESLQKAF--AGVSKLLFISGPH--YDNTLLIV 85 (287)
T ss_dssp HHHHHTTTSCGGGEEEEESCTTT----T--HHHHHTTCEEEECCTTCHHHHHHHT--TTCSEEEECCCCC--SCHHHHHH
T ss_pred HHHHHHHhCCCCeEEEEEcCHHH----H--hHHhhcCCeEEEeccCCHHHHHHHH--hcCCEEEEcCCCC--cCchHHHH
Confidence 45555555112456665543321 1 2344556543321 22 3455667 6788887654321 11123778
Q ss_pred chHHHHHHHHhCCCeEEEeccC
Q 017312 269 GTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 269 GT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
||..+.-+|+..+++-+|...+
T Consensus 86 ~~~~l~~a~~~~~~~~~v~~Ss 107 (287)
T 2jl1_A 86 QHANVVKAARDAGVKHIAYTGY 107 (287)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEECC
Confidence 9999999999999865554443
No 144
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=30.42 E-value=1.2e+02 Score=26.20 Aligned_cols=83 Identities=13% Similarity=0.004 Sum_probs=52.9
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH-HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHH
Q 017312 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (373)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak 278 (373)
....+|.++|..|... ......|...|+.|....|..-+ ..+++..+|.||+..+ ++++ -|--.+..+-+
T Consensus 21 ~~~~~ILivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--lp~~-----~g~~~~~~lr~ 91 (250)
T 3r0j_A 21 TPEARVLVVDDEANIV--ELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVX--MPGM-----DGFGVLRRLRA 91 (250)
T ss_dssp CSSCEEEEECSCHHHH--HHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESC--CSSS-----CHHHHHHHHHH
T ss_pred CCCceEEEEECCHHHH--HHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCC-----CHHHHHHHHHh
Confidence 3467899999888653 23355688899998877665433 3345568999988653 3332 24333433333
Q ss_pred h-CCCeEEEeccCc
Q 017312 279 F-HNILFYVAAPLT 291 (373)
Q Consensus 279 ~-~~vPvyV~a~~~ 291 (373)
. .++|+++++...
T Consensus 92 ~~~~~~ii~lt~~~ 105 (250)
T 3r0j_A 92 DGIDAPALFLTARD 105 (250)
T ss_dssp TTCCCCEEEEECST
T ss_pred cCCCCCEEEEECCC
Confidence 3 479999987654
No 145
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=30.39 E-value=1e+02 Score=26.41 Aligned_cols=81 Identities=11% Similarity=0.066 Sum_probs=50.3
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchH-HHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhC
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA-AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFH 280 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa-~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~ 280 (373)
..+|.++|..|... ......|...|..|....+.. +-..+++...|.||+..+- ++. -|--.+..+-+..
T Consensus 5 ~~~ILivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilD~~l--~~~-----~g~~~~~~lr~~~ 75 (238)
T 2gwr_A 5 RQRILVVDDDASLA--EMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGM-----NGIDVCRVLRADS 75 (238)
T ss_dssp CCEEEEECSCHHHH--HHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESSC--SSS-----CHHHHHHHHHTTC
T ss_pred cCeEEEEeCCHHHH--HHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCC--CCC-----CHHHHHHHHHhCC
Confidence 35788888887653 223456778898887666543 2234455678999886542 222 2444444444456
Q ss_pred CCeEEEeccCc
Q 017312 281 NILFYVAAPLT 291 (373)
Q Consensus 281 ~vPvyV~a~~~ 291 (373)
++|+++++...
T Consensus 76 ~~~ii~lt~~~ 86 (238)
T 2gwr_A 76 GVPIVMLTAKT 86 (238)
T ss_dssp CCCEEEEEETT
T ss_pred CCcEEEEeCCC
Confidence 89999987643
No 146
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=30.27 E-value=1.7e+02 Score=22.02 Aligned_cols=80 Identities=8% Similarity=-0.032 Sum_probs=45.5
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhhCCCC-eEEEcchHHHH-HHH-cCCCCEEEEcceeEecCCCeecccchHHHHHHHH
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVHDRIP-ATLIADSAAAA-LMK-DGRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~~GI~-vtlI~Dsa~~~-~m~-~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak 278 (373)
..+|.++|..|... +.....|.+.|.. +....+..-+. .+. ....|.|++..+ ++++ -|.-.+..+-+
T Consensus 5 ~~~iLivdd~~~~~--~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~--~p~~-----~g~~~~~~lr~ 75 (129)
T 3h1g_A 5 SMKLLVVDDSSTMR--RIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWN--MPEM-----NGLDLVKKVRS 75 (129)
T ss_dssp -CCEEEECSCHHHH--HHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSC--CSSS-----CHHHHHHHHHT
T ss_pred CcEEEEEeCCHHHH--HHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCC--CCCC-----CHHHHHHHHHh
Confidence 45788888877653 2335568888986 55555443332 233 347898887543 3332 23333333322
Q ss_pred h---CCCeEEEeccC
Q 017312 279 F---HNILFYVAAPL 290 (373)
Q Consensus 279 ~---~~vPvyV~a~~ 290 (373)
. .++|+++++..
T Consensus 76 ~~~~~~~pii~~s~~ 90 (129)
T 3h1g_A 76 DSRFKEIPIIMITAE 90 (129)
T ss_dssp STTCTTCCEEEEESC
T ss_pred cCCCCCCeEEEEeCC
Confidence 1 36899998653
No 147
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=30.18 E-value=1.8e+02 Score=22.10 Aligned_cols=80 Identities=11% Similarity=0.025 Sum_probs=48.9
Q ss_pred eEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHH-HHH--cCCCCEEEEcceeEecCCCeecccchHHHHHHHH-
Q 017312 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAA-LMK--DGRVSAVIVGADRVAANGDTANKIGTYSLALCAK- 278 (373)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~-~m~--~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak- 278 (373)
.+|.++|..|... +.....|.+.|..+....+..-+. .++ ...+|.||+..+- .++ -|.-.+..+-+
T Consensus 4 ~~ilivdd~~~~~--~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l--~~~-----~g~~~~~~l~~~ 74 (143)
T 3jte_A 4 AKILVIDDESTIL--QNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKM--PKL-----SGMDILREIKKI 74 (143)
T ss_dssp CEEEEECSCHHHH--HHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCC--SSS-----CHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHH--HHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCC--CCC-----cHHHHHHHHHHh
Confidence 5788888777653 233556888898888776654332 343 4689999987653 222 23333333333
Q ss_pred hCCCeEEEeccCc
Q 017312 279 FHNILFYVAAPLT 291 (373)
Q Consensus 279 ~~~vPvyV~a~~~ 291 (373)
..++|+++++...
T Consensus 75 ~~~~~ii~ls~~~ 87 (143)
T 3jte_A 75 TPHMAVIILTGHG 87 (143)
T ss_dssp CTTCEEEEEECTT
T ss_pred CCCCeEEEEECCC
Confidence 3479999987644
No 148
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=30.05 E-value=23 Score=32.88 Aligned_cols=96 Identities=13% Similarity=0.046 Sum_probs=60.0
Q ss_pred ccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCC--e
Q 017312 187 GTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGD--T 264 (373)
Q Consensus 187 ~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~--v 264 (373)
..+..+++.+.+.|.+.-|+.++.-|..+-.++ .....+.|+ .++-.|+.+.+- +...+.-..+..+..-|. +
T Consensus 75 ~~~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l-~~~a~~~gi--~vigPNc~Gii~--~~~~~~~~~~~~~~~~G~va~ 149 (288)
T 1oi7_A 75 PAAADAALEAAHAGIPLIVLITEGIPTLDMVRA-VEEIKALGS--RLIGGNCPGIIS--AEETKIGIMPGHVFKRGRVGI 149 (288)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHH-HHHHHHHTC--EEEESSSCEEEE--TTTEEEESSCGGGCCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHHHHHcCC--EEEeCCCCeEEc--CCCceeEEcccCCCCCCCEEE
Confidence 456788889988898777777877665433344 333455565 566666665444 443333332333344564 5
Q ss_pred ecccchHHHHHH--HHhCCCeEEEe
Q 017312 265 ANKIGTYSLALC--AKFHNILFYVA 287 (373)
Q Consensus 265 ~nkiGT~~lA~~--Ak~~~vPvyV~ 287 (373)
+++.||...+++ +...|+.|--+
T Consensus 150 vsqSG~l~~~~~~~~~~~g~G~s~~ 174 (288)
T 1oi7_A 150 ISRSGTLTYEAAAALSQAGLGTTTT 174 (288)
T ss_dssp EESCHHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCHHHHHHHHHHHHhCCCCEEEE
Confidence 899999988775 67778887643
No 149
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=30.03 E-value=2.7e+02 Score=24.12 Aligned_cols=107 Identities=12% Similarity=0.109 Sum_probs=54.9
Q ss_pred HHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC---CCeeEEEEec---CCCCC--c-chHHHHH
Q 017312 152 AIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE---GVLERAYCSE---TRPFN--Q-GSRLTAF 222 (373)
Q Consensus 152 ~I~~~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~---g~~~~V~v~E---srP~~--q-G~rlta~ 222 (373)
.+++.++++|.+.+.+++. ++-.+- | +|...+.+.+.+. -.+.+|+-.+ +-|.. + ...+..+
T Consensus 12 ~l~~~aA~~l~~~i~~~~~-~i~ls~-G-------~T~~~~~~~L~~~~~~~~~v~v~~ldEr~gv~~~~~~sn~~~~~~ 82 (234)
T 2ri0_A 12 EGSKVAFRMLEEEITFGAK-TLGLAT-G-------STPLELYKEIRESHLDFSDMVSINLDEYVGLSADDKQSYAYFMKQ 82 (234)
T ss_dssp HHHHHHHHHHHHHHHTTCC-EEEECC-S-------STTHHHHHHHHTSCCCCTTCEEEESEEETTCCTTSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-EEEEcC-C-------CCHHHHHHHHHhcCCChhheEEEeCeeecCCCCCChHHHHHHHHH
Confidence 3445555555444432344 333321 2 3556666655442 2356666554 23322 1 1233344
Q ss_pred HHh-hCCCCeEEEcchHH----------HHHHHcCCCCEEEEcceeEecCCCeec-ccch
Q 017312 223 ELV-HDRIPATLIADSAA----------AALMKDGRVSAVIVGADRVAANGDTAN-KIGT 270 (373)
Q Consensus 223 ~L~-~~GI~vtlI~Dsa~----------~~~m~~~~vd~VivGAd~I~~nG~v~n-kiGT 270 (373)
.|. +.+++..++++... ...+++..+|.+++|-= .||.+.. .-|+
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~Dl~llGiG---~dgh~a~l~p~~ 139 (234)
T 2ri0_A 83 NLFAAKPFKKSYLPNGLAADLAKETEYYDQILAQYPIDLQILGIG---RNAHIGFNEPGT 139 (234)
T ss_dssp HTTTTSCCSEEECCCTTCSCHHHHHHHHHHHHHHSCCSEEEECCC---TTSCBTTBCTTC
T ss_pred HHhccCCCcHhhcCCCCCCCHHHHHHHHHHHHHhCCCCEEEEccC---CCCCchhcCCCC
Confidence 554 45888888875421 22243367999999965 7777643 4444
No 150
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=29.87 E-value=1.4e+02 Score=24.69 Aligned_cols=81 Identities=4% Similarity=-0.102 Sum_probs=48.1
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHH-HHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHH-h
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAA-LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-F 279 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~-~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak-~ 279 (373)
..+|.++|..|... ......|...|+.|....+..-+. .+++...|.||+..+ ++++ -|--.+..+-+ .
T Consensus 4 ~~~ilivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~-----~g~~~~~~l~~~~ 74 (208)
T 1yio_A 4 KPTVFVVDDDMSVR--EGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMR--MPGM-----SGIELQEQLTAIS 74 (208)
T ss_dssp CCEEEEECSCHHHH--HHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESC--CSSS-----CHHHHHHHHHHTT
T ss_pred CCEEEEEcCCHHHH--HHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeCC--CCCC-----CHHHHHHHHHhcC
Confidence 34788888877653 223456778899888666544332 344567888887543 3332 23333333333 3
Q ss_pred CCCeEEEeccCc
Q 017312 280 HNILFYVAAPLT 291 (373)
Q Consensus 280 ~~vPvyV~a~~~ 291 (373)
.++|+++++...
T Consensus 75 ~~~~ii~ls~~~ 86 (208)
T 1yio_A 75 DGIPIVFITAHG 86 (208)
T ss_dssp CCCCEEEEESCT
T ss_pred CCCCEEEEeCCC
Confidence 479999987644
No 151
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=29.68 E-value=1.4e+02 Score=25.00 Aligned_cols=75 Identities=15% Similarity=0.061 Sum_probs=46.1
Q ss_pred EEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH-HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhC-C
Q 017312 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFH-N 281 (373)
Q Consensus 204 ~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~-~ 281 (373)
+|.++|..|.... .....|...|+.|....+..-+ ..+++...|.|| +++. -|--.+..+-+.. +
T Consensus 2 ~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi------lp~~-----~g~~~~~~lr~~~~~ 68 (223)
T 2hqr_A 2 RVLLIEKNSVLGG--EIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM------VSDK-----NALSFVSRIKEKHSS 68 (223)
T ss_dssp CEEEECSCHHHHH--HHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEE------ECCT-----THHHHHHHHHHHCTT
T ss_pred EEEEEcCCHHHHH--HHHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEE------eCCC-----CHHHHHHHHHhCCCC
Confidence 4777787776532 2345688889999866655433 345556789888 3332 2433343343335 8
Q ss_pred CeEEEeccCc
Q 017312 282 ILFYVAAPLT 291 (373)
Q Consensus 282 vPvyV~a~~~ 291 (373)
+|+++++...
T Consensus 69 ~~ii~lt~~~ 78 (223)
T 2hqr_A 69 IVVLVSSDNP 78 (223)
T ss_dssp SEEEEEESSC
T ss_pred CcEEEEECCC
Confidence 9999987654
No 152
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=29.54 E-value=2.8e+02 Score=24.48 Aligned_cols=91 Identities=11% Similarity=0.093 Sum_probs=49.9
Q ss_pred HHHHHCCCeeEEEEecCCCCC-cchHHHHHHHhhCCCCeEEEc--ch---HHHHHHHcCCCCEEEEcceeEecCCCeec-
Q 017312 194 RALHSEGVLERAYCSETRPFN-QGSRLTAFELVHDRIPATLIA--DS---AAAALMKDGRVSAVIVGADRVAANGDTAN- 266 (373)
Q Consensus 194 ~~a~~~g~~~~V~v~EsrP~~-qG~rlta~~L~~~GI~vtlI~--Ds---a~~~~m~~~~vd~VivGAd~I~~nG~v~n- 266 (373)
..|...+..++|+-+...+.. +-.+-....|.+.|+++.... .+ ++..+.++.++|.+++|+..- |.+-.
T Consensus 192 ~la~~~~~~l~ll~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~---~~~~~~ 268 (294)
T 3loq_A 192 FVVKKTGGELHIIHVSEDGDKTADLRVMEEVIGAEGIEVHVHIESGTPHKAILAKREEINATTIFMGSRGA---GSVMTM 268 (294)
T ss_dssp HHHHHHTCEEEEEEECSSSCCHHHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHHHTTCSEEEEECCCC---SCHHHH
T ss_pred HHhhhcCCEEEEEEEccCchHHHHHHHHHHHHHHcCCcEEEEEecCCHHHHHHHHHHhcCcCEEEEeCCCC---CCccce
Confidence 334445666665544333321 111112446778899865432 22 233344456899999999752 22222
Q ss_pred ccchHHHHHHHHhCCCeEEEec
Q 017312 267 KIGTYSLALCAKFHNILFYVAA 288 (373)
Q Consensus 267 kiGT~~lA~~Ak~~~vPvyV~a 288 (373)
-.|+..-. +.++-.+||+|+=
T Consensus 269 ~~Gs~~~~-vl~~~~~pvLvv~ 289 (294)
T 3loq_A 269 ILGSTSES-VIRRSPVPVFVCK 289 (294)
T ss_dssp HHHCHHHH-HHHHCSSCEEEEC
T ss_pred eeCcHHHH-HHhcCCCCEEEEC
Confidence 14544444 4567789999973
No 153
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=29.42 E-value=84 Score=23.46 Aligned_cols=80 Identities=11% Similarity=0.103 Sum_probs=46.9
Q ss_pred eEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH-HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHh--
Q 017312 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF-- 279 (373)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~-- 279 (373)
.+|.++|..|... ......|.+.|..+....+..-+ ..+++...|.|++..+ ++++ -|.-.+..+-+.
T Consensus 3 ~~ilivdd~~~~~--~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~ 73 (127)
T 2jba_A 3 RRILVVEDEAPIR--EMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWM--LPGG-----SGIQFIKHLRRESM 73 (127)
T ss_dssp CEEEEECSCHHHH--HHHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEESE--ETTE-----EHHHHHHHHHTSTT
T ss_pred cEEEEEcCCHHHH--HHHHHHHHHCCceEEEeCCHHHHHHHHhccCCCEEEEecC--CCCC-----CHHHHHHHHHhCcc
Confidence 3678888777543 22345677889988766654433 2344557898888543 3322 243333334333
Q ss_pred -CCCeEEEeccCc
Q 017312 280 -HNILFYVAAPLT 291 (373)
Q Consensus 280 -~~vPvyV~a~~~ 291 (373)
.++|+++++...
T Consensus 74 ~~~~~ii~~s~~~ 86 (127)
T 2jba_A 74 TRDIPVVMLTARG 86 (127)
T ss_dssp TTTSCEEEEEETT
T ss_pred cCCCCEEEEeCCC
Confidence 479999986543
No 154
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=29.39 E-value=1.5e+02 Score=26.72 Aligned_cols=97 Identities=15% Similarity=0.146 Sum_probs=54.6
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEE--cc-hHHHHHHHcCC
Q 017312 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--AD-SAAAALMKDGR 247 (373)
Q Consensus 171 ~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI--~D-sa~~~~m~~~~ 247 (373)
+||..+-+|.+ | ..+++.+.++|. +|+++--+|. +.... ..+|...|+.+... .| ..+...+ .+
T Consensus 13 ~ilVtGatG~i-----G--~~l~~~L~~~g~--~V~~l~R~~~-~~~~~-~~~l~~~~v~~v~~Dl~d~~~l~~a~--~~ 79 (318)
T 2r6j_A 13 KILIFGGTGYI-----G--NHMVKGSLKLGH--PTYVFTRPNS-SKTTL-LDEFQSLGAIIVKGELDEHEKLVELM--KK 79 (318)
T ss_dssp CEEEETTTSTT-----H--HHHHHHHHHTTC--CEEEEECTTC-SCHHH-HHHHHHTTCEEEECCTTCHHHHHHHH--TT
T ss_pred eEEEECCCchH-----H--HHHHHHHHHCCC--cEEEEECCCC-chhhH-HHHhhcCCCEEEEecCCCHHHHHHHH--cC
Confidence 46655545433 2 234455556674 4555543332 11122 23466678765432 12 3456667 66
Q ss_pred CCEEEEcceeEecCCCeecccchHHHHHHHHhCC-CeEEEe
Q 017312 248 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHN-ILFYVA 287 (373)
Q Consensus 248 vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~-vPvyV~ 287 (373)
+|.||--|- ..+-.++..+.-+|+..| ++-+|.
T Consensus 80 ~d~vi~~a~-------~~~~~~~~~l~~aa~~~g~v~~~v~ 113 (318)
T 2r6j_A 80 VDVVISALA-------FPQILDQFKILEAIKVAGNIKRFLP 113 (318)
T ss_dssp CSEEEECCC-------GGGSTTHHHHHHHHHHHCCCCEEEC
T ss_pred CCEEEECCc-------hhhhHHHHHHHHHHHhcCCCCEEEe
Confidence 777765442 233567888888999988 888874
No 155
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=29.32 E-value=82 Score=24.99 Aligned_cols=82 Identities=13% Similarity=0.088 Sum_probs=49.8
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHhhCCCCeE-EEcchH-HHHHHHcC--CCCEEEEcceeEecCCCeecccchHHHHH
Q 017312 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPAT-LIADSA-AAALMKDG--RVSAVIVGADRVAANGDTANKIGTYSLAL 275 (373)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vt-lI~Dsa-~~~~m~~~--~vd~VivGAd~I~~nG~v~nkiGT~~lA~ 275 (373)
+...+|.++|..|... +.....|.+.|+.+. ...+.. +-..+++. .+|.||+..+- .++ -|--.+..
T Consensus 34 ~~~~~Ilivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l--~~~-----~g~~~~~~ 104 (157)
T 3hzh_A 34 GIPFNVLIVDDSVFTV--KQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITM--PKM-----DGITCLSN 104 (157)
T ss_dssp TEECEEEEECSCHHHH--HHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSC--SSS-----CHHHHHHH
T ss_pred CCceEEEEEeCCHHHH--HHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccC--CCc-----cHHHHHHH
Confidence 4568999999887653 233556888999887 444433 22334444 78999887643 221 23333333
Q ss_pred HHH-hCCCeEEEeccC
Q 017312 276 CAK-FHNILFYVAAPL 290 (373)
Q Consensus 276 ~Ak-~~~vPvyV~a~~ 290 (373)
+-+ ..++|+++++..
T Consensus 105 lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 105 IMEFDKNARVIMISAL 120 (157)
T ss_dssp HHHHCTTCCEEEEESC
T ss_pred HHhhCCCCcEEEEecc
Confidence 333 357999988654
No 156
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=29.20 E-value=1.1e+02 Score=25.87 Aligned_cols=89 Identities=9% Similarity=-0.011 Sum_probs=48.6
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeE---EEcchHHHHHHHcCCCCEEEEcceeEecCCCe--e
Q 017312 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPAT---LIADSAAAALMKDGRVSAVIVGADRVAANGDT--A 265 (373)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vt---lI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v--~ 265 (373)
.+.+.+.++| .+|+++.-+|.... . + ..++.+. +-....+..++ .++|.||--|-....+-.. .
T Consensus 19 ~l~~~L~~~g--~~V~~~~r~~~~~~-~-----~-~~~~~~~~~Dl~d~~~~~~~~--~~~d~vi~~a~~~~~~~~~~~~ 87 (227)
T 3dhn_A 19 ALLNEALNRG--FEVTAVVRHPEKIK-I-----E-NEHLKVKKADVSSLDEVCEVC--KGADAVISAFNPGWNNPDIYDE 87 (227)
T ss_dssp HHHHHHHTTT--CEEEEECSCGGGCC-C-----C-CTTEEEECCCTTCHHHHHHHH--TTCSEEEECCCC------CCSH
T ss_pred HHHHHHHHCC--CEEEEEEcCcccch-h-----c-cCceEEEEecCCCHHHHHHHh--cCCCEEEEeCcCCCCChhHHHH
Confidence 3556666666 56777755443211 1 1 0222211 11123455667 6899888776433222211 3
Q ss_pred cccchHHHHHHHHhCCCeEEEeccC
Q 017312 266 NKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 266 nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
|-.||..+.-+|+.++++-+|...+
T Consensus 88 n~~~~~~l~~~~~~~~~~~~v~~Ss 112 (227)
T 3dhn_A 88 TIKVYLTIIDGVKKAGVNRFLMVGG 112 (227)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 7889999999999999865655444
No 157
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=29.07 E-value=1.4e+02 Score=26.24 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=40.1
Q ss_pred cccH-HHHHHHHHHCCCeeEEE-EecCCCCCcchHHHHHHHhhCCCCeEEEc----------chHHHHHHHcCCCCEEEE
Q 017312 186 YGTA-LGVIRALHSEGVLERAY-CSETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVIV 253 (373)
Q Consensus 186 ~~ta-l~~l~~a~~~g~~~~V~-v~EsrP~~qG~rlta~~L~~~GI~vtlI~----------Dsa~~~~m~~~~vd~Viv 253 (373)
.++. ..+|...++.+....|. |.-.+|...|.+ ...+.|||+..+. |..+-..+++.++|.+++
T Consensus 11 ~g~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~~~~~----~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~ 86 (216)
T 2ywr_A 11 RGSNLQAIIDAIESGKVNASIELVISDNPKAYAIE----RCKKHNVECKVIQRKEFPSKKEFEERMALELKKKGVELVVL 86 (216)
T ss_dssp CCHHHHHHHHHHHTTSSCEEEEEEEESCTTCHHHH----HHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcHHHHHHHHHHHhCCCCCeEEEEEeCCCChHHHH----HHHHcCCCEEEeCcccccchhhhhHHHHHHHHhcCCCEEEE
Confidence 3444 45566555444323332 222344444432 2456799998754 245566677889999988
Q ss_pred cce-eEec
Q 017312 254 GAD-RVAA 260 (373)
Q Consensus 254 GAd-~I~~ 260 (373)
.+= +|++
T Consensus 87 a~y~~il~ 94 (216)
T 2ywr_A 87 AGFMRILS 94 (216)
T ss_dssp SSCCSCCC
T ss_pred eCchhhCC
Confidence 654 5543
No 158
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=29.07 E-value=74 Score=25.67 Aligned_cols=46 Identities=22% Similarity=0.147 Sum_probs=31.7
Q ss_pred HHHHHHHHHHCCC-eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcch
Q 017312 189 ALGVIRALHSEGV-LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS 237 (373)
Q Consensus 189 al~~l~~a~~~g~-~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Ds 237 (373)
++.+.+.+.+.|. .++|++----| |.+-..+.|...|+.+..|.|.
T Consensus 55 a~~~~~~~~~~Gi~~v~v~vkG~G~---Gr~~airaL~~~Gl~I~~I~Dv 101 (117)
T 3r8n_K 55 AERCADAVKEYGIKNLEVMVKGPGP---GRESTIRALNAAGFRITNITDV 101 (117)
T ss_dssp HHHHHHHHTTSCCCEEEEEEECSSS---STTHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHhCCcEEEEEEeCCCc---cHHHHHHHHHhCCCEEEEEEEe
Confidence 4556667777774 57777754333 4444456789999999999884
No 159
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=28.81 E-value=1.8e+02 Score=25.41 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=38.3
Q ss_pred ccH-HHHHHHHHHCCCeeEEEEecC-CCCCcchHHHHHHHhhCCCCeEEEc----------chHHHHHHHcCCCCEEEEc
Q 017312 187 GTA-LGVIRALHSEGVLERAYCSET-RPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVIVG 254 (373)
Q Consensus 187 ~ta-l~~l~~a~~~g~~~~V~v~Es-rP~~qG~rlta~~L~~~GI~vtlI~----------Dsa~~~~m~~~~vd~VivG 254 (373)
++. ..+|....+......|..+=| +|...+.+ ...+.|||+..+. |..+-..+++.++|.+++.
T Consensus 14 g~~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~----~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a 89 (212)
T 3av3_A 14 GTNFQAIVDAAKRGDLPARVALLVCDRPGAKVIE----RAARENVPAFVFSPKDYPSKAAFESEILRELKGRQIDWIALA 89 (212)
T ss_dssp CHHHHHHHHHHHTTCCCEEEEEEEESSTTCHHHH----HHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred cHHHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHH----HHHHcCCCEEEeCcccccchhhhHHHHHHHHHhcCCCEEEEc
Confidence 444 445555444322344432222 34433322 3457899998764 2355666777899998876
Q ss_pred ce-eEe
Q 017312 255 AD-RVA 259 (373)
Q Consensus 255 Ad-~I~ 259 (373)
+= +|+
T Consensus 90 ~y~~il 95 (212)
T 3av3_A 90 GYMRLI 95 (212)
T ss_dssp SCCSCC
T ss_pred hhhhhC
Confidence 63 444
No 160
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=28.52 E-value=4.1e+02 Score=26.59 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=70.7
Q ss_pred HHHHHH--hHhhhcCCCcEEEEecCCCccccccccc-HHH-HHHHHHHCC-CeeEEEEecCCCC----------------
Q 017312 155 SYGASF--LQNQLKNSKFSVLTHCNTGSLATAGYGT-ALG-VIRALHSEG-VLERAYCSETRPF---------------- 213 (373)
Q Consensus 155 ~~g~~~--i~~~~~~~~~~ILT~~~sgslat~g~~t-al~-~l~~a~~~g-~~~~V~v~EsrP~---------------- 213 (373)
+.++++ |+ +|++|..+..+ |... +.. +.+.+.+++ ++++++..-..+.
T Consensus 50 eEAv~~~~Ik-----dG~tV~~gg~~------G~P~~Li~AL~~r~~~~g~kdLtli~~s~g~~~~~l~~~i~~g~v~r~ 118 (509)
T 1xr4_A 50 EEAIRRSGLK-----NGMTISFHHAF------RGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWPLIEHIKNGVVRQI 118 (509)
T ss_dssp HHHHHHTTCC-----TTCEEEECCTT------GGGCCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHHHTTSEEEE
T ss_pred HHHhcCCCCC-----CcCEEEECCcc------CCHHHHHHHHHHHHHhcCCcceEEEecCCcCcchhHHHHhhcCceEEE
Confidence 345667 77 89999987543 2332 333 344454444 4677775422221
Q ss_pred ---CcchHHHHHHHhh---CCCCeEEEcchHHHHHHHc--CCCCEEEEcceeEecCCCeeccc-----chHHHHHHHHhC
Q 017312 214 ---NQGSRLTAFELVH---DRIPATLIADSAAAALMKD--GRVSAVIVGADRVAANGDTANKI-----GTYSLALCAKFH 280 (373)
Q Consensus 214 ---~qG~rlta~~L~~---~GI~vtlI~Dsa~~~~m~~--~~vd~VivGAd~I~~nG~v~nki-----GT~~lA~~Ak~~ 280 (373)
+-|..+ +++.. ..+|..+.+-....+++.. -.+|..++.|...-.+|.+.-.- ++...+.++...
T Consensus 119 ~~~~~g~~~--r~~i~~G~~~~P~~~s~~~g~p~ll~~~~l~iDVAlI~as~aD~~Gnls~~~g~~~~~s~~~~~a~a~~ 196 (509)
T 1xr4_A 119 YTSGLRGKL--GEEISAGLMENPVQIHSHGGRVKLIQSGELNIDVAFLGVPCCDEFGNANGFSGKSRCGSLGYAQVDAQY 196 (509)
T ss_dssp EESBCCHHH--HHHHHHTCCSSCEEECCHHHHHHHHHTTSSCCSEEEEEESEEETTCCEESSSSSSCCCCCTTHHHHHHH
T ss_pred EEccCCHHH--HHHHHcCCCcCCeeEeccCCHHHHHhcCCCCceEEEEEeccCCCCceEEEeCCCCcccchHHHHHHHhh
Confidence 112111 23333 3478888754446777743 37999999999998999876322 356666666666
Q ss_pred CCeEEEe
Q 017312 281 NILFYVA 287 (373)
Q Consensus 281 ~vPvyV~ 287 (373)
..-|++-
T Consensus 197 A~~VIaE 203 (509)
T 1xr4_A 197 AKCVVLL 203 (509)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 6656553
No 161
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=28.35 E-value=1.6e+02 Score=26.20 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=39.6
Q ss_pred ccH-HHHHHHHHHCCCeeEE--EEecCCCCCcchHHHHHHHhhCCCCeEEEc----------chHHHHHHHcCCCCEEEE
Q 017312 187 GTA-LGVIRALHSEGVLERA--YCSETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVIV 253 (373)
Q Consensus 187 ~ta-l~~l~~a~~~g~~~~V--~v~EsrP~~qG~rlta~~L~~~GI~vtlI~----------Dsa~~~~m~~~~vd~Viv 253 (373)
++. ..+|....+......| +++ .+|...+.+ ...+.|||+..+. |..+-..+++.++|.+++
T Consensus 33 g~~~~~~l~~l~~~~~~~~I~~Vvt-~~~~~~~~~----~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~ 107 (229)
T 3auf_A 33 GTNLQAILDGCREGRIPGRVAVVIS-DRADAYGLE----RARRAGVDALHMDPAAYPSRTAFDAALAERLQAYGVDLVCL 107 (229)
T ss_dssp CHHHHHHHHHHHTTSSSEEEEEEEE-SSTTCHHHH----HHHHTTCEEEECCGGGSSSHHHHHHHHHHHHHHTTCSEEEE
T ss_pred cHHHHHHHHHHHhCCCCCeEEEEEc-CCCchHHHH----HHHHcCCCEEEECcccccchhhccHHHHHHHHhcCCCEEEE
Confidence 444 4455554443223333 333 345544432 2457899998764 345566777789999988
Q ss_pred cce-eEec
Q 017312 254 GAD-RVAA 260 (373)
Q Consensus 254 GAd-~I~~ 260 (373)
.+= +|++
T Consensus 108 agy~~IL~ 115 (229)
T 3auf_A 108 AGYMRLVR 115 (229)
T ss_dssp SSCCSCCC
T ss_pred cChhHhCC
Confidence 654 5543
No 162
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=28.29 E-value=1.6e+02 Score=27.60 Aligned_cols=70 Identities=9% Similarity=0.060 Sum_probs=44.3
Q ss_pred ccccHHHHHHHHHHCCC-eeEEEEe-cCCCCCcchHHHHHHHhhCCCCeEEEc---------chHHHHHHHcCCCCEEEE
Q 017312 185 GYGTALGVIRALHSEGV-LERAYCS-ETRPFNQGSRLTAFELVHDRIPATLIA---------DSAAAALMKDGRVSAVIV 253 (373)
Q Consensus 185 g~~tal~~l~~a~~~g~-~~~V~v~-EsrP~~qG~rlta~~L~~~GI~vtlI~---------Dsa~~~~m~~~~vd~Viv 253 (373)
|.|+.+.-|..+++.|. ...|.++ =.+|...+ + ..+.|||+..++ |..+...+++.++|.+++
T Consensus 114 g~g~nl~~ll~~~~~g~l~~~I~~Visn~~~~~~--~----A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVl 187 (302)
T 3o1l_A 114 RESHCLADLLHRWHSDELDCDIACVISNHQDLRS--M----VEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVL 187 (302)
T ss_dssp SCCHHHHHHHHHHHTTCSCSEEEEEEESSSTTHH--H----HHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCchhHHHHHHHHHCCCCCcEEEEEEECcHHHHH--H----HHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEH
Confidence 45777776666666664 3444333 33565421 2 247899999883 345667788889999888
Q ss_pred cce-eEec
Q 017312 254 GAD-RVAA 260 (373)
Q Consensus 254 GAd-~I~~ 260 (373)
..= +|++
T Consensus 188 agym~IL~ 195 (302)
T 3o1l_A 188 ARYMQILP 195 (302)
T ss_dssp SSCCSCCC
T ss_pred hHhhhhcC
Confidence 654 4554
No 163
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=28.14 E-value=83 Score=34.69 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=45.0
Q ss_pred HHHHHhhCCCCeEEEcch-----HHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 220 TAFELVHDRIPATLIADS-----AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 220 ta~~L~~~GI~vtlI~Ds-----a~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
|++.|.+.||+|+.+.+- .+.-+|+++++|.||--.. |. -...-.|.+=..|-.++||++--
T Consensus 977 Ta~~l~~~gi~~~~v~~~~~g~p~i~d~~~~~~~~~~~~~~~-----~~-~~~~~~~~~r~~a~~~~~~~~t~ 1043 (1073)
T 1a9x_A 977 TAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTS-----GR-RAIEDSRVIRRSALQYKVHYDTT 1043 (1073)
T ss_dssp HHHHHHTTTCCCEECBCTTTCSSBHHHHHHHTCCSEEEECCC-----SH-HHHHHTHHHHHHHHHTTCEEESS
T ss_pred hHHHHHhCCceEEEEeecCCCCccHHHHHHcCCeEEEEECCC-----Cc-ccccchHHHHHHHHHhCCCEEcc
Confidence 567788999999998752 3666788899999985332 21 11335677888899999998853
No 164
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=28.10 E-value=3.4e+02 Score=27.20 Aligned_cols=99 Identities=16% Similarity=0.189 Sum_probs=54.9
Q ss_pred HHHHHhHhhhcCCCcEEEEecCCCccccccccc-HHH-HHHHHHH---CC--CeeEEEEe-cCC----------------
Q 017312 156 YGASFLQNQLKNSKFSVLTHCNTGSLATAGYGT-ALG-VIRALHS---EG--VLERAYCS-ETR---------------- 211 (373)
Q Consensus 156 ~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~t-al~-~l~~a~~---~g--~~~~V~v~-Esr---------------- 211 (373)
.++++|+ +|++|...+.+|+ |.-. +.. +.+.+.+ +| .+++++.. -..
T Consensus 10 EAv~~Ik-----dGdtV~~gGf~~~----G~P~~Li~AL~~r~~~~~~~g~~~~Ltl~~~~s~g~~~~~~l~~~g~v~~~ 80 (506)
T 2nvv_A 10 EAAEFVH-----HNDNVGFSGFTPA----GNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGARLDGVLAQADAVKFR 80 (506)
T ss_dssp HHHTTCC-----TTCEEEECCSSST----TCCCSHHHHHHHHHHHHHTTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEE
T ss_pred HHHhhCC-----CCCEEEECCCCCC----CCHHHHHHHHHHhHHhhccccCCceEEEEEecCCCcchhHHhccCCceEEE
Confidence 4556787 9999999866422 2222 333 3344433 33 24555542 111
Q ss_pred -CCCcchHHHHHHHhhCC-CCeEEEcchHHHHHHHcC---CCCEEEEcceeEecCCCee
Q 017312 212 -PFNQGSRLTAFELVHDR-IPATLIADSAAAALMKDG---RVSAVIVGADRVAANGDTA 265 (373)
Q Consensus 212 -P~~qG~rlta~~L~~~G-I~vtlI~Dsa~~~~m~~~---~vd~VivGAd~I~~nG~v~ 265 (373)
|+..|.. .+++.+.| ++..-+.-+.+..++..+ ++|..++-|...-.+|.+.
T Consensus 81 ~~~~~~~~--~r~~i~~G~i~~~P~~ls~v~~~l~~~~l~~~DVAlI~as~aDe~Gnls 137 (506)
T 2nvv_A 81 TPYQSNKD--LRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKIL 137 (506)
T ss_dssp ESCCCCHH--HHHHHHTTSSEECCCCGGGHHHHHHTTSSCCCCEEEEEESEECTTSEEE
T ss_pred eeeCCCHH--HHHHHHcCCCeEeCCCcccHHHHHHcCCcCCCCEEEEEecccCCCceEE
Confidence 2322332 23455555 333333345566555442 6899999999999999764
No 165
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=27.97 E-value=1.3e+02 Score=24.87 Aligned_cols=82 Identities=15% Similarity=0.037 Sum_probs=50.4
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHhhCCCCeE-EEcchHH-HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHH
Q 017312 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPAT-LIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (373)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vt-lI~Dsa~-~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak 278 (373)
...+|.++|..|... ......|...|+.+. ...+..- -..+++..+|.||+..+- ++. -|--.+..+-+
T Consensus 12 m~~~iLivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~~--p~~-----~g~~~~~~l~~ 82 (205)
T 1s8n_A 12 VPRRVLIAEDEALIR--MDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKM--PRR-----DGIDAASEIAS 82 (205)
T ss_dssp CCCEEEEECSSHHHH--HHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESSC--SSS-----CHHHHHHHHHH
T ss_pred CCccEEEEECCHHHH--HHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEEeCCC--CCC-----ChHHHHHHHHh
Confidence 346899999887653 223556788899887 4554432 234455679999886532 322 24444444555
Q ss_pred hCCCeEEEeccCc
Q 017312 279 FHNILFYVAAPLT 291 (373)
Q Consensus 279 ~~~vPvyV~a~~~ 291 (373)
.+..|+++++...
T Consensus 83 ~~~~pii~lt~~~ 95 (205)
T 1s8n_A 83 KRIAPIVVLTAFS 95 (205)
T ss_dssp TTCSCEEEEEEGG
T ss_pred cCCCCEEEEecCC
Confidence 5667999886544
No 166
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Probab=27.42 E-value=2.6e+02 Score=27.51 Aligned_cols=97 Identities=19% Similarity=0.153 Sum_probs=56.9
Q ss_pred HHHHHHHCCCeeEEEEecCCCC-CcchHHHHHHHhhCCCCeEEE-cc----hHHHHHHHc----CCCCEEEEcceeEecC
Q 017312 192 VIRALHSEGVLERAYCSETRPF-NQGSRLTAFELVHDRIPATLI-AD----SAAAALMKD----GRVSAVIVGADRVAAN 261 (373)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~-~qG~rlta~~L~~~GI~vtlI-~D----sa~~~~m~~----~~vd~VivGAd~I~~n 261 (373)
+.+.+.++|.. +|+++--++. .++.+-...+|.+.|..++++ +| .++..+++. +.+|.||-.|- +..+
T Consensus 242 la~~La~~G~~-~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~~~g~ld~VIh~AG-~~~~ 319 (486)
T 2fr1_A 242 IARWLARRGAP-HLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDDVPLSAVFHAAA-TLDD 319 (486)
T ss_dssp HHHHHHHHTCS-EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTSCEEEEEECCC-CCCC
T ss_pred HHHHHHHcCCC-EEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEECCc-cCCC
Confidence 34555555653 3444433322 223222345788888887765 33 345566632 24588777663 3344
Q ss_pred CCe-------------ecccchHHHHHHHHhCCCeEEEeccC
Q 017312 262 GDT-------------ANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 262 G~v-------------~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
|.+ .|-.|+..+.-+++..+..++|...+
T Consensus 320 ~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS 361 (486)
T 2fr1_A 320 GTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSS 361 (486)
T ss_dssp CCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEE
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcC
Confidence 432 26788999988888888888887655
No 167
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=26.92 E-value=67 Score=32.25 Aligned_cols=72 Identities=21% Similarity=0.205 Sum_probs=43.5
Q ss_pred eEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHH--------------------HHHHHcCCCCEEEEcceeEecCC
Q 017312 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA--------------------AALMKDGRVSAVIVGADRVAANG 262 (373)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~--------------------~~~m~~~~vd~VivGAd~I~~nG 262 (373)
-+|+++-... -|..+ +++|.+.|+++++|-.+.- ..=+ .++|.|++..+.
T Consensus 349 ~~viIiG~G~--~G~~l-a~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi--~~ad~vi~~~~~----- 418 (565)
T 4gx0_A 349 ELIFIIGHGR--IGCAA-AAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGI--DRASGIIVTTND----- 418 (565)
T ss_dssp CCEEEECCSH--HHHHH-HHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTT--TSCSEEEECCSC-----
T ss_pred CCEEEECCCH--HHHHH-HHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCc--cccCEEEEECCC-----
Confidence 4566664422 25554 7889999999998874321 0112 455655544431
Q ss_pred CeecccchHHHHHHHHhCCCeEEEec
Q 017312 263 DTANKIGTYSLALCAKFHNILFYVAA 288 (373)
Q Consensus 263 ~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (373)
.-=+..+++.||+.|.+..+++
T Consensus 419 ----d~~ni~~~~~ak~l~~~~~iia 440 (565)
T 4gx0_A 419 ----DSTNIFLTLACRHLHSHIRIVA 440 (565)
T ss_dssp ----HHHHHHHHHHHHHHCSSSEEEE
T ss_pred ----chHHHHHHHHHHHHCCCCEEEE
Confidence 2345677899999998755554
No 168
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=26.88 E-value=37 Score=28.29 Aligned_cols=78 Identities=10% Similarity=-0.065 Sum_probs=48.0
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHh-
Q 017312 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF- 279 (373)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~- 279 (373)
+..+|.++|..|... ......|...|+.+....++.-+ + ...+|.||+..+ +++. + |. ....+.+.
T Consensus 11 ~~~~iLivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~a--l-~~~~dlvl~D~~--mp~~---~--g~-l~~~~~~~~ 77 (196)
T 1qo0_D 11 RELQVLVLNPPGEVS--DALVLQLIRIGCSVRQCWPPPEA--F-DVPVDVVFTSIF--QNRH---H--DE-IAALLAAGT 77 (196)
T ss_dssp GGCEEEEESCTTHHH--HHHHHHHHHHTCEEEEECSCCSS--C-SSCCSEEEEECC--SSTH---H--HH-HHHHHHHSC
T ss_pred cCCeEEEEcCChhHH--HHHHHHHHHcCCeEEEecCchhh--C-CCCCCEEEEeCC--CCcc---c--hH-HHHHHhccC
Confidence 356788888877653 22345677788888877665532 2 357898888654 2321 1 44 33344444
Q ss_pred CCCeEEEeccCc
Q 017312 280 HNILFYVAAPLT 291 (373)
Q Consensus 280 ~~vPvyV~a~~~ 291 (373)
..+|+++++...
T Consensus 78 ~~~~ii~lt~~~ 89 (196)
T 1qo0_D 78 PRTTLVALVEYE 89 (196)
T ss_dssp TTCEEEEEECCC
T ss_pred CCCCEEEEEcCC
Confidence 589999987643
No 169
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=26.78 E-value=50 Score=26.74 Aligned_cols=82 Identities=12% Similarity=0.050 Sum_probs=50.7
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEE-EcchHHH-HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHH
Q 017312 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATL-IADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (373)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtl-I~Dsa~~-~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~A 277 (373)
+++.+|.++|-.|... ++....|.+.|..++. ..|..-+ ..+++...|.|++- --.++. -|--.+..+=
T Consensus 10 ~k~~rILiVDD~~~~r--~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~DlillD--~~MP~m-----dG~el~~~ir 80 (134)
T 3to5_A 10 NKNMKILIVDDFSTMR--RIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTD--WNMPGM-----QGIDLLKNIR 80 (134)
T ss_dssp CTTCCEEEECSCHHHH--HHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEEE--SCCSSS-----CHHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHH--HHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEEc--CCCCCC-----CHHHHHHHHH
Confidence 5678899999888764 4556678899997554 4454333 34567789988874 344532 1333322221
Q ss_pred ---HhCCCeEEEeccC
Q 017312 278 ---KFHNILFYVAAPL 290 (373)
Q Consensus 278 ---k~~~vPvyV~a~~ 290 (373)
...++||++++..
T Consensus 81 ~~~~~~~ipvI~lTa~ 96 (134)
T 3to5_A 81 ADEELKHLPVLMITAE 96 (134)
T ss_dssp HSTTTTTCCEEEEESS
T ss_pred hCCCCCCCeEEEEECC
Confidence 1246999998653
No 170
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=26.51 E-value=2.1e+02 Score=21.63 Aligned_cols=84 Identities=7% Similarity=0.019 Sum_probs=52.2
Q ss_pred CCCeeEEEEecCCCCCcchHHHHHHHhhCCC--CeEEEcchHHH-HHHHc-----CCCCEEEEcceeEecCCCeecccch
Q 017312 199 EGVLERAYCSETRPFNQGSRLTAFELVHDRI--PATLIADSAAA-ALMKD-----GRVSAVIVGADRVAANGDTANKIGT 270 (373)
Q Consensus 199 ~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI--~vtlI~Dsa~~-~~m~~-----~~vd~VivGAd~I~~nG~v~nkiGT 270 (373)
.++..+|.++|..|... ......|.+.|. .|....+..-+ ..+++ ...|.||+..+ +.++ -|-
T Consensus 6 ~~~~~~iLivdd~~~~~--~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~--l~~~-----~g~ 76 (146)
T 3ilh_A 6 TRKIDSVLLIDDDDIVN--FLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDIN--MPGI-----NGW 76 (146)
T ss_dssp -CCEEEEEEECSCHHHH--HHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESS--CSSS-----CHH
T ss_pred cCccceEEEEeCCHHHH--HHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCC--CCCC-----CHH
Confidence 35678899999887653 233556888888 67766665433 34555 77999998654 2332 233
Q ss_pred HHHHHHHH-----hCCCeEEEeccCc
Q 017312 271 YSLALCAK-----FHNILFYVAAPLT 291 (373)
Q Consensus 271 ~~lA~~Ak-----~~~vPvyV~a~~~ 291 (373)
-.+..+-+ ...+|+++++...
T Consensus 77 ~~~~~l~~~~~~~~~~~~ii~~t~~~ 102 (146)
T 3ilh_A 77 ELIDLFKQHFQPMKNKSIVCLLSSSL 102 (146)
T ss_dssp HHHHHHHHHCGGGTTTCEEEEECSSC
T ss_pred HHHHHHHHhhhhccCCCeEEEEeCCC
Confidence 33333433 3689999886544
No 171
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.48 E-value=77 Score=24.26 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=27.2
Q ss_pred HHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 243 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 243 m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
++++++..||+..|+ -.| +...+-..|++++||+|..
T Consensus 27 i~~gka~lViiA~D~-~~~-------~~~~i~~~c~~~~ip~~~~ 63 (99)
T 3j21_Z 27 AKTGGAKLIIVAKNA-PKE-------IKDDIYYYAKLSDIPVYEF 63 (99)
T ss_dssp HHHTCCSEEEEECCC-CHH-------HHHHHHHHHHHTTCCEEEE
T ss_pred HHcCCccEEEEeCCC-CHH-------HHHHHHHHHHHcCCCEEEe
Confidence 456899999998882 222 3455566789999999886
No 172
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=26.46 E-value=86 Score=23.40 Aligned_cols=46 Identities=22% Similarity=0.370 Sum_probs=26.2
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCe
Q 017312 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPA 231 (373)
Q Consensus 168 ~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~v 231 (373)
.+..|+.||.+|.- .......+.+.|- .|++.+. | +.+| .+.|.||
T Consensus 55 ~~~~ivvyC~~g~r-------s~~a~~~L~~~G~--~v~~l~G-----G--~~~W--~~~g~pv 100 (100)
T 3foj_A 55 DNETYYIICKAGGR-------SAQVVQYLEQNGV--NAVNVEG-----G--MDEF--GDEGLEH 100 (100)
T ss_dssp TTSEEEEECSSSHH-------HHHHHHHHHTTTC--EEEEETT-----H--HHHH--CSSSCBC
T ss_pred CCCcEEEEcCCCch-------HHHHHHHHHHCCC--CEEEecc-----c--HHHH--HHcCCCC
Confidence 45789999988632 2223334445565 7777653 3 3344 4556654
No 173
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=26.45 E-value=1.1e+02 Score=23.71 Aligned_cols=45 Identities=9% Similarity=0.164 Sum_probs=28.6
Q ss_pred HHHHHHcCCCCEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCeEEEe
Q 017312 239 AAALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 239 ~~~~m~~~~vd~VivGAd~I~~nG~v~n-kiGT~~lA~~Ak~~~vPvyV~ 287 (373)
+..+.++.++|.+++|+..- |..-. -.|+..-.+ .++-++||+|+
T Consensus 91 I~~~a~~~~~dliV~G~~~~---~~~~~~~~Gs~~~~v-l~~~~~pVlvv 136 (137)
T 2z08_A 91 ILQAARAEKADLIVMGTRGL---GALGSLFLGSQSQRV-VAEAPCPVLLV 136 (137)
T ss_dssp HHHHHHHTTCSEEEEESSCT---TCCSCSSSCHHHHHH-HHHCSSCEEEE
T ss_pred HHHHHHHcCCCEEEECCCCC---chhhhhhhccHHHHH-HhcCCCCEEEe
Confidence 33444567999999999853 22221 256555444 45578999986
No 174
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=26.36 E-value=63 Score=28.81 Aligned_cols=87 Identities=8% Similarity=-0.053 Sum_probs=46.1
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchH---HHHHHHcCCCCEEEEcceeEecCCCe-eccc-chHHHH
Q 017312 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA---AAALMKDGRVSAVIVGADRVAANGDT-ANKI-GTYSLA 274 (373)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa---~~~~m~~~~vd~VivGAd~I~~nG~v-~nki-GT~~lA 274 (373)
....+|.+.+-.|...-..+ ...|...|+++.++.-.. +...+ .++|.+|+.--.....+.. .... +...+.
T Consensus 10 ~~~~~~~~i~~~~~~~~~~i-~~~l~~~G~~v~v~~~~~~~~~~~~l--~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i 86 (239)
T 1o1y_A 10 HHHVRVLAIRHVEIEDLGMM-EDIFREKNWSFDYLDTPKGEKLERPL--EEYSLVVLLGGYMGAYEEEKYPFLKYEFQLI 86 (239)
T ss_dssp CCCCEEEEECSSTTSSCTHH-HHHHHHTTCEEEEECGGGTCCCSSCG--GGCSEEEECCCSCCTTCTTTCTHHHHHHHHH
T ss_pred cceeEEEEEECCCCCCchHH-HHHHHhCCCcEEEeCCcCccccccch--hcCCEEEECCCCccccCCccChhHHHHHHHH
Confidence 44678888888887654344 556889999998665322 11123 4567665432111111110 0001 122222
Q ss_pred HHHHhCCCeEEEecc
Q 017312 275 LCAKFHNILFYVAAP 289 (373)
Q Consensus 275 ~~Ak~~~vPvyV~a~ 289 (373)
.-|.+.++|++-+|-
T Consensus 87 ~~~~~~~~PiLGIC~ 101 (239)
T 1o1y_A 87 EEILKKEIPFLGICL 101 (239)
T ss_dssp HHHHHHTCCEEEETH
T ss_pred HHHHHCCCCEEEEch
Confidence 334467999997773
No 175
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=26.28 E-value=83 Score=26.22 Aligned_cols=89 Identities=15% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeeccc
Q 017312 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKI 268 (373)
Q Consensus 189 al~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nki 268 (373)
+..+.....+.+ +|++.=..--.--++..+..|...|+++..+.|.. ...+ .+=|.||+ |...|.. .
T Consensus 27 i~~~~~~i~~a~---~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~-~~~~--~~~d~vI~----iS~sG~t---~ 93 (186)
T 1m3s_A 27 ADQLADHILSSH---QIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEIL-TPPL--AEGDLVII----GSGSGET---K 93 (186)
T ss_dssp HHHHHHHHHHCS---CEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTT-CCCC--CTTCEEEE----ECSSSCC---H
T ss_pred HHHHHHHHHcCC---eEEEEecCHHHHHHHHHHHHHHhcCCeEEEeCccc-ccCC--CCCCEEEE----EcCCCCc---H
Q ss_pred chHHHHHHHHhCCCeEEEeccC
Q 017312 269 GTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 269 GT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
-+..++-.||..|+|+++++..
T Consensus 94 ~~~~~~~~ak~~g~~vi~IT~~ 115 (186)
T 1m3s_A 94 SLIHTAAKAKSLHGIVAALTIN 115 (186)
T ss_dssp HHHHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHHHHCCCEEEEEECC
No 176
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=26.18 E-value=1.8e+02 Score=28.30 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=34.1
Q ss_pred HHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCC-CCEEEEcc
Q 017312 193 IRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGR-VSAVIVGA 255 (373)
Q Consensus 193 l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~-vd~VivGA 255 (373)
-+.++++| .+|.+.|.++..+. .. ...|.+.||++.+-.+.. .++ .. +|.||++.
T Consensus 25 A~~l~~~G--~~V~~~D~~~~~~~-~~-~~~L~~~gi~~~~g~~~~--~~~--~~~~d~vv~sp 80 (451)
T 3lk7_A 25 ARLLAKLG--AIVTVNDGKPFDEN-PT-AQSLLEEGIKVVCGSHPL--ELL--DEDFCYMIKNP 80 (451)
T ss_dssp HHHHHHTT--CEEEEEESSCGGGC-HH-HHHHHHTTCEEEESCCCG--GGG--GSCEEEEEECT
T ss_pred HHHHHhCC--CEEEEEeCCcccCC-hH-HHHHHhCCCEEEECCChH--Hhh--cCCCCEEEECC
Confidence 35556666 67788898875433 23 347899999887654422 233 34 78776653
No 177
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=26.07 E-value=3.2e+02 Score=25.54 Aligned_cols=76 Identities=14% Similarity=0.073 Sum_probs=40.6
Q ss_pred eEEEEecCCCCCcchHHHHHH-HhhCCCCeEEEcch--HHHHHHHcCCCCEEEEcceeEe-cCCCeecccchHHHHHHHH
Q 017312 203 ERAYCSETRPFNQGSRLTAFE-LVHDRIPATLIADS--AAAALMKDGRVSAVIVGADRVA-ANGDTANKIGTYSLALCAK 278 (373)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~~-L~~~GI~vtlI~Ds--a~~~~m~~~~vd~VivGAd~I~-~nG~v~nkiGT~~lA~~Ak 278 (373)
-+|++.+ |.+.+....... +...|+++..+.-. .+-..+ ++++..|++ ..+. ..|.+.. --.++-+|+
T Consensus 96 d~vi~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~i-~~~~~~v~~--~~~~n~~G~~~~---l~~i~~l~~ 167 (412)
T 2cb1_A 96 DEVVAAK--GLFGQTIGLFGQVLSLMGVTVRYVDPEPEAVREAL-SAKTRAVFV--ETVANPALLVPD---LEALATLAE 167 (412)
T ss_dssp CEEEEET--TCCHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHC-CTTEEEEEE--ESSCTTTCCCCC---HHHHHHHHH
T ss_pred CEEEEeC--CCchhHHHHHHHHHHHcCCEEEEECCCHHHHHHHh-ccCCeEEEE--eCCCCCCccccc---HHHHHHHHH
Confidence 3566654 555442211112 45679988888632 222333 134444443 2222 2344432 356788899
Q ss_pred hCCCeEEE
Q 017312 279 FHNILFYV 286 (373)
Q Consensus 279 ~~~vPvyV 286 (373)
+||+++++
T Consensus 168 ~~~~~li~ 175 (412)
T 2cb1_A 168 EAGVALVV 175 (412)
T ss_dssp HHTCEEEE
T ss_pred HcCCEEEE
Confidence 99999887
No 178
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=26.04 E-value=5e+02 Score=25.88 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=50.3
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEec---CCCCC----------c---chHHHHHHHhhCCCCeEE
Q 017312 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSE---TRPFN----------Q---GSRLTAFELVHDRIPATL 233 (373)
Q Consensus 170 ~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~E---srP~~----------q---G~rlta~~L~~~GI~vtl 233 (373)
+-|+++..+ ||+...+++.+..-++++-++-+. .-|+. | |.+.++.-|.+.|||.++
T Consensus 74 dgvi~~~~T-------Fs~a~~~i~~l~~l~~PvL~~~~q~~~~ip~~~id~d~m~lnqsacG~~e~~~~l~r~gi~~~~ 146 (500)
T 4f2d_A 74 AGLVVWLHT-------FSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAV 146 (500)
T ss_dssp EEEEEECCS-------CCCTHHHHHHHHHCCSCEEEEECCSCSSCCTTTCCHHHHHHCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cEEEEeCCc-------CccHHHHHHHHHhcCCCEEEEeCCCCCCCCccccchHHHhccccccchHHHHHHHHHcCCCeEE
Confidence 667776555 566666777777667777666552 23421 2 556677789999999999
Q ss_pred Ecch-----------------HHHHHHHcCCCCEEEEcc
Q 017312 234 IADS-----------------AAAALMKDGRVSAVIVGA 255 (373)
Q Consensus 234 I~Ds-----------------a~~~~m~~~~vd~VivGA 255 (373)
+.-. .+-.-| ++.....+|.
T Consensus 147 v~G~~~d~~~~~~i~~w~raa~~~~~l--r~~rig~iG~ 183 (500)
T 4f2d_A 147 VTGHWQDKQAHERIGSWMRQAVSKQDT--RHLKVCRFGD 183 (500)
T ss_dssp EESCTTCHHHHHHHHHHHHHHHHHHHH--TTCEEEEESC
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHh--cCCeEEEECC
Confidence 8641 122234 6777788887
No 179
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=25.97 E-value=39 Score=31.29 Aligned_cols=104 Identities=9% Similarity=0.022 Sum_probs=60.8
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCC
Q 017312 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVS 249 (373)
Q Consensus 170 ~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd 249 (373)
|.++..-+. ..+..++..+.+.|.+.-|+.++.-|..+-.++ .....+.|+ .++-.|..+.+- +...
T Consensus 66 D~viI~tP~--------~~~~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l-~~~A~~~gv--~liGPNc~Gi~~--p~~~ 132 (288)
T 2nu8_A 66 TASVIYVPA--------PFCKDSILEAIDAGIKLIITITEGIPTLDMLTV-KVKLDEAGV--RMIGPNTPGVIT--PGEC 132 (288)
T ss_dssp CEEEECCCG--------GGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHH-HHHHHHHTC--EEECSSCCEEEE--TTTE
T ss_pred CEEEEecCH--------HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHHHHHcCC--EEEecCCcceec--CCcc
Confidence 555555443 467888888988998877777887666544444 334556666 456555544332 3322
Q ss_pred EEEEcceeEecCCC--eecccchHHHHHH--HHhCCCeEEE
Q 017312 250 AVIVGADRVAANGD--TANKIGTYSLALC--AKFHNILFYV 286 (373)
Q Consensus 250 ~VivGAd~I~~nG~--v~nkiGT~~lA~~--Ak~~~vPvyV 286 (373)
+.-.-+..+..-|. ++.+.||...+++ +...|+.|--
T Consensus 133 ~~~~~~~~~~~~G~i~~vsqSG~l~~~~~~~~~~~g~G~s~ 173 (288)
T 2nu8_A 133 KIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQST 173 (288)
T ss_dssp EEESSCTTSCCEEEEEEEESCHHHHHHHHHHHHHTTCCEEE
T ss_pred eeEecccCCCCCCCEEEEECcHHHHHHHHHHHHhcCCCEEE
Confidence 21111122334454 5788999766654 5677777763
No 180
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=25.71 E-value=1.7e+02 Score=22.03 Aligned_cols=79 Identities=11% Similarity=0.008 Sum_probs=47.7
Q ss_pred eEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHH-HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHH-hC
Q 017312 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-FH 280 (373)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~-~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak-~~ 280 (373)
.+|.++|..|.... .....|...|+.+....+..- -..+++...|.||+..+- ++. -|.-.+..+.+ ..
T Consensus 4 ~~Ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~l--~~~-----~g~~~~~~l~~~~~ 74 (132)
T 3crn_A 4 KRILIVDDDTAILD--STKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKL--PDM-----EGTELLEKAHKLRP 74 (132)
T ss_dssp CEEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBC--SSS-----BHHHHHHHHHHHCT
T ss_pred cEEEEEeCCHHHHH--HHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecCC--CCC-----chHHHHHHHHhhCC
Confidence 46888888776532 234467788998886655432 233455789999887542 221 23333333333 35
Q ss_pred CCeEEEeccC
Q 017312 281 NILFYVAAPL 290 (373)
Q Consensus 281 ~vPvyV~a~~ 290 (373)
++|+++++..
T Consensus 75 ~~~ii~~s~~ 84 (132)
T 3crn_A 75 GMKKIMVTGY 84 (132)
T ss_dssp TSEEEEEESC
T ss_pred CCcEEEEecc
Confidence 7999988654
No 181
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=25.64 E-value=86 Score=28.20 Aligned_cols=85 Identities=18% Similarity=0.053 Sum_probs=47.2
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEc--chHHHHHHHcCCCCEEEEcceeEecC----CCee
Q 017312 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA--DSAAAALMKDGRVSAVIVGADRVAAN----GDTA 265 (373)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~--Dsa~~~~m~~~~vd~VivGAd~I~~n----G~v~ 265 (373)
+++.+.++|. +|+++.-+|... +|. ++.+...- ...+..++ .++|.||--|-....+ ---.
T Consensus 18 l~~~L~~~g~--~V~~~~r~~~~~-------~~~--~~~~~~~Dl~~~~~~~~~--~~~d~Vih~a~~~~~~~~~~~~~~ 84 (311)
T 3m2p_A 18 VVESIKNDGN--TPIILTRSIGNK-------AIN--DYEYRVSDYTLEDLINQL--NDVDAVVHLAATRGSQGKISEFHD 84 (311)
T ss_dssp HHHHHHHTTC--EEEEEESCCC--------------CCEEEECCCCHHHHHHHT--TTCSEEEECCCCCCSSSCGGGTHH
T ss_pred HHHHHHhCCC--EEEEEeCCCCcc-------cCC--ceEEEEccccHHHHHHhh--cCCCEEEEccccCCCCChHHHHHH
Confidence 4556666664 566665442211 122 44332111 24455667 6888887665433211 1125
Q ss_pred cccchHHHHHHHHhCCCeEEEecc
Q 017312 266 NKIGTYSLALCAKFHNILFYVAAP 289 (373)
Q Consensus 266 nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (373)
|-.||..+.-+|+..+++-+|...
T Consensus 85 n~~~~~~ll~a~~~~~~~r~v~~S 108 (311)
T 3m2p_A 85 NEILTQNLYDACYENNISNIVYAS 108 (311)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEc
Confidence 788999999999999998444433
No 182
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=25.53 E-value=2e+02 Score=21.37 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=47.7
Q ss_pred eEEEEecCCCCCcchHHHHHHHhhCCC--CeEEEcchHH-HHHHHc-------CCCCEEEEcceeEecCCCeecccchHH
Q 017312 203 ERAYCSETRPFNQGSRLTAFELVHDRI--PATLIADSAA-AALMKD-------GRVSAVIVGADRVAANGDTANKIGTYS 272 (373)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~~L~~~GI--~vtlI~Dsa~-~~~m~~-------~~vd~VivGAd~I~~nG~v~nkiGT~~ 272 (373)
.+|.++|..|... +.....|.+.|. .+....+..- -..+++ ...|.||+..+- .+ .-|--.
T Consensus 3 ~~ilivdd~~~~~--~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~--~~-----~~g~~~ 73 (140)
T 1k68_A 3 KKIFLVEDNKADI--RLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNL--PK-----KDGREV 73 (140)
T ss_dssp CEEEEECCCHHHH--HHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSC--SS-----SCHHHH
T ss_pred CeEEEEeCCHHHH--HHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCC--Cc-----ccHHHH
Confidence 4788888877653 233556888887 5666655433 233433 579999887653 22 123333
Q ss_pred HHHHHHh---CCCeEEEeccCc
Q 017312 273 LALCAKF---HNILFYVAAPLT 291 (373)
Q Consensus 273 lA~~Ak~---~~vPvyV~a~~~ 291 (373)
+..+-+. .++|+++++...
T Consensus 74 ~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 74 LAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp HHHHHHSTTGGGSCEEEEESCC
T ss_pred HHHHHcCcccccccEEEEecCC
Confidence 4444443 469999987643
No 183
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=25.46 E-value=1.9e+02 Score=21.93 Aligned_cols=79 Identities=8% Similarity=-0.053 Sum_probs=47.5
Q ss_pred eEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHH-HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHh--
Q 017312 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF-- 279 (373)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~-~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~-- 279 (373)
.+|.++|..|... +.....|...|+.+....+..- -..+++..+|.||+..+- ++. -|--.+..+-+.
T Consensus 4 ~~ILivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~D~~l--~~~-----~g~~~~~~l~~~~~ 74 (138)
T 3c3m_A 4 YTILVVDDSPMIV--DVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIMM--EPM-----DGWETLERIKTDPA 74 (138)
T ss_dssp CEEEEECSCHHHH--HHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCC--SSS-----CHHHHHHHHHHSTT
T ss_pred ceEEEEeCCHHHH--HHHHHHHHHcCceEEEeCCHHHHHHHHhccCCCEEEEeCCC--CCC-----CHHHHHHHHHcCcc
Confidence 4688888777653 2334567788998886665432 234556778999886542 322 233333333332
Q ss_pred -CCCeEEEeccC
Q 017312 280 -HNILFYVAAPL 290 (373)
Q Consensus 280 -~~vPvyV~a~~ 290 (373)
..+|+++++..
T Consensus 75 ~~~~~ii~ls~~ 86 (138)
T 3c3m_A 75 TRDIPVLMLTAK 86 (138)
T ss_dssp TTTSCEEEEESS
T ss_pred cCCCCEEEEECC
Confidence 36899988654
No 184
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=25.36 E-value=2.4e+02 Score=22.93 Aligned_cols=101 Identities=15% Similarity=0.057 Sum_probs=57.9
Q ss_pred CCcEEEEecCCCccc--ccccccHHHHHHHHH--HCCCeeEEEEecCCC--CCcchHHHHHHHhhCCCCeEE----Ecch
Q 017312 168 SKFSVLTHCNTGSLA--TAGYGTALGVIRALH--SEGVLERAYCSETRP--FNQGSRLTAFELVHDRIPATL----IADS 237 (373)
Q Consensus 168 ~~~~ILT~~~sgsla--t~g~~tal~~l~~a~--~~g~~~~V~v~EsrP--~~qG~rlta~~L~~~GI~vtl----I~Ds 237 (373)
++.+|+..+ .+- .-|+..++..+.... +++.++++++.-..| .. .++ ...+.+.| .+++ ++..
T Consensus 35 ~~~~i~~~G---~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~~--~~l-~~~~~~~~-~v~~~~g~~~~~ 107 (200)
T 2bfw_A 35 EGVTFMFIG---RFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELE--GWA-RSLEEKHG-NVKVITEMLSRE 107 (200)
T ss_dssp SCEEEEEES---CBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHH--HHH-HHHHHHCT-TEEEECSCCCHH
T ss_pred CCCEEEEee---ccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCChHHH--HHH-HHHHHhcC-CEEEEeccCCHH
Confidence 345666554 332 123334555555554 555678877776544 22 123 22345566 7777 4555
Q ss_pred HHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 238 AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 238 a~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
-+..+| ..+|.+++.... .| .| ...+=|-.+|+|+++.
T Consensus 108 ~~~~~~--~~ad~~l~ps~~---e~-----~~--~~~~Ea~a~G~PvI~~ 145 (200)
T 2bfw_A 108 FVRELY--GSVDFVIIPSYF---EP-----FG--LVALEAMCLGAIPIAS 145 (200)
T ss_dssp HHHHHH--TTCSEEEECCSC---CS-----SC--HHHHHHHHTTCEEEEE
T ss_pred HHHHHH--HHCCEEEECCCC---CC-----cc--HHHHHHHHCCCCEEEe
Confidence 778888 899999875432 22 12 3345566789998874
No 185
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=25.32 E-value=1.4e+02 Score=26.86 Aligned_cols=105 Identities=12% Similarity=0.017 Sum_probs=54.9
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEE--cc-hHHHHHHHcC
Q 017312 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--AD-SAAAALMKDG 246 (373)
Q Consensus 170 ~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI--~D-sa~~~~m~~~ 246 (373)
.+||..+-+|.+ | ..+++.+.++|. +|+++.-+|.. .. +|.+.++.+... .| ..+..++ .
T Consensus 14 M~ilVtGatG~i-----G--~~l~~~L~~~g~--~V~~~~r~~~~-~~-----~l~~~~~~~~~~Dl~d~~~~~~~~--~ 76 (342)
T 2x4g_A 14 VKYAVLGATGLL-----G--HHAARAIRAAGH--DLVLIHRPSSQ-IQ-----RLAYLEPECRVAEMLDHAGLERAL--R 76 (342)
T ss_dssp CEEEEESTTSHH-----H--HHHHHHHHHTTC--EEEEEECTTSC-GG-----GGGGGCCEEEECCTTCHHHHHHHT--T
T ss_pred CEEEEECCCcHH-----H--HHHHHHHHHCCC--EEEEEecChHh-hh-----hhccCCeEEEEecCCCHHHHHHHH--c
Confidence 456665544432 2 234555666664 66666544432 11 233335543321 12 3456667 6
Q ss_pred CCCEEEEcceeEecC-CC-----eecccchHHHHHHHHhCCCeEEEeccCc
Q 017312 247 RVSAVIVGADRVAAN-GD-----TANKIGTYSLALCAKFHNILFYVAAPLT 291 (373)
Q Consensus 247 ~vd~VivGAd~I~~n-G~-----v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (373)
++|.||--|-..-.. .+ -+|-.||..+.-+|+.++++-+|...+.
T Consensus 77 ~~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~ 127 (342)
T 2x4g_A 77 GLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSA 127 (342)
T ss_dssp TCSEEEEC------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCG
T ss_pred CCCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCH
Confidence 799888766432110 11 1467899999999999997655544443
No 186
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=25.29 E-value=87 Score=23.68 Aligned_cols=80 Identities=13% Similarity=0.106 Sum_probs=46.7
Q ss_pred eEEEEecCCCCCcchHHHHHHHhhCCCCeE-EEcch-HHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHH-Hh
Q 017312 203 ERAYCSETRPFNQGSRLTAFELVHDRIPAT-LIADS-AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA-KF 279 (373)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~~L~~~GI~vt-lI~Ds-a~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~A-k~ 279 (373)
++|.++|..|... +.....|.+.|..+. ...+. .+-..+++...|.||+..+- .++ -|--.+..+- +.
T Consensus 2 ~~ilivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l--~~~-----~g~~~~~~l~~~~ 72 (134)
T 3f6c_A 2 LNAIIIDDHPLAI--AAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDI--PGV-----NGIQVLETLRKRQ 72 (134)
T ss_dssp EEEEEECCCHHHH--HHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTC--SSS-----CHHHHHHHHHHTT
T ss_pred eEEEEEcCCHHHH--HHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCC--CCC-----ChHHHHHHHHhcC
Confidence 5788888877653 233556888887776 33332 23344556789999987653 221 2333333332 23
Q ss_pred CCCeEEEeccCc
Q 017312 280 HNILFYVAAPLT 291 (373)
Q Consensus 280 ~~vPvyV~a~~~ 291 (373)
.++|+++++...
T Consensus 73 ~~~~ii~~s~~~ 84 (134)
T 3f6c_A 73 YSGIIIIVSAKN 84 (134)
T ss_dssp CCSEEEEEECC-
T ss_pred CCCeEEEEeCCC
Confidence 479999887644
No 187
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=25.23 E-value=2.6e+02 Score=24.60 Aligned_cols=56 Identities=11% Similarity=-0.025 Sum_probs=35.3
Q ss_pred HHhhCCCCeEEE--cc-hHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCC-CeEEEe
Q 017312 223 ELVHDRIPATLI--AD-SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN-ILFYVA 287 (373)
Q Consensus 223 ~L~~~GI~vtlI--~D-sa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~-vPvyV~ 287 (373)
+|...|+.+... .| ..+...+ .++|.||--| +..+-.|+..++-+|+..| ++-+|.
T Consensus 51 ~l~~~~v~~v~~D~~d~~~l~~~~--~~~d~vi~~a-------~~~~~~~~~~l~~aa~~~g~v~~~v~ 110 (307)
T 2gas_A 51 NYQSLGVILLEGDINDHETLVKAI--KQVDIVICAA-------GRLLIEDQVKIIKAIKEAGNVKKFFP 110 (307)
T ss_dssp HHHHTTCEEEECCTTCHHHHHHHH--TTCSEEEECS-------SSSCGGGHHHHHHHHHHHCCCSEEEC
T ss_pred HHHhCCCEEEEeCCCCHHHHHHHH--hCCCEEEECC-------cccccccHHHHHHHHHhcCCceEEee
Confidence 456677654332 22 3455667 6677665543 2233567888888999998 887773
No 188
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=25.19 E-value=1.9e+02 Score=25.56 Aligned_cols=98 Identities=13% Similarity=0.070 Sum_probs=53.1
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCC---c-chHHHHHHHhhCCCCeEEE--cc-hHHHHHH
Q 017312 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFN---Q-GSRLTAFELVHDRIPATLI--AD-SAAAALM 243 (373)
Q Consensus 171 ~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~---q-G~rlta~~L~~~GI~vtlI--~D-sa~~~~m 243 (373)
+||..+-+|.+ | ..+++.+.++|. +|+++.-++.. . ..+. ..+|...|+.+... .| ..+...+
T Consensus 6 ~ilVtGatG~i-----G--~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~-~~~l~~~~v~~v~~D~~d~~~l~~~~ 75 (308)
T 1qyc_A 6 RILLIGATGYI-----G--RHVAKASLDLGH--PTFLLVRESTASSNSEKAQL-LESFKASGANIVHGSIDDHASLVEAV 75 (308)
T ss_dssp CEEEESTTSTT-----H--HHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHH-HHHHHTTTCEEECCCTTCHHHHHHHH
T ss_pred EEEEEcCCcHH-----H--HHHHHHHHhCCC--CEEEEECCcccccCHHHHHH-HHHHHhCCCEEEEeccCCHHHHHHHH
Confidence 45555545433 2 234455556674 55555433221 1 1111 12455667654321 12 3455666
Q ss_pred HcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCC-CeEEEe
Q 017312 244 KDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN-ILFYVA 287 (373)
Q Consensus 244 ~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~-vPvyV~ 287 (373)
.++|.||--| +..+-.|+..++-+|+..| ++-+|.
T Consensus 76 --~~~d~vi~~a-------~~~~~~~~~~l~~aa~~~g~v~~~v~ 111 (308)
T 1qyc_A 76 --KNVDVVISTV-------GSLQIESQVNIIKAIKEVGTVKRFFP 111 (308)
T ss_dssp --HTCSEEEECC-------CGGGSGGGHHHHHHHHHHCCCSEEEC
T ss_pred --cCCCEEEECC-------cchhhhhHHHHHHHHHhcCCCceEee
Confidence 5677665544 3334568889999999998 888774
No 189
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=25.11 E-value=1.1e+02 Score=22.93 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=26.6
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCe
Q 017312 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPA 231 (373)
Q Consensus 168 ~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~v 231 (373)
.+..|+.||.+|. ....+...+.+.|. .|++.+. | +.+| .+.|.|+
T Consensus 55 ~~~~iv~yC~~g~-------rs~~a~~~L~~~G~--~v~~l~G-----G--~~~W--~~~g~p~ 100 (103)
T 3eme_A 55 KNEIYYIVCAGGV-------RSAKVVEYLEANGI--DAVNVEG-----G--MHAW--GDEGLEI 100 (103)
T ss_dssp TTSEEEEECSSSS-------HHHHHHHHHHTTTC--EEEEETT-----H--HHHH--CSSSCBC
T ss_pred CCCeEEEECCCCh-------HHHHHHHHHHHCCC--CeEEeCC-----C--HHHH--HHCCCcC
Confidence 4578999999863 22233344445565 7776652 3 4455 4566654
No 190
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*
Probab=24.81 E-value=78 Score=28.88 Aligned_cols=95 Identities=17% Similarity=0.149 Sum_probs=50.3
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEE--cc-hHHHHHHHcCCCCEEEEcceeEec-----CC-
Q 017312 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--AD-SAAAALMKDGRVSAVIVGADRVAA-----NG- 262 (373)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI--~D-sa~~~~m~~~~vd~VivGAd~I~~-----nG- 262 (373)
+.+.+.++|...+|+++.-++....... ..++...++.+... +| ..+..++ .++|.||--|-.... +-
T Consensus 20 l~~~L~~~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d~vih~A~~~~~~~~~~~~~ 96 (348)
T 1oc2_A 20 FVHYVYNNHPDVHVTVLDKLTYAGNKAN-LEAILGDRVELVVGDIADAELVDKLA--AKADAIVHYAAESHNDNSLNDPS 96 (348)
T ss_dssp HHHHHHHHCTTCEEEEEECCCTTCCGGG-TGGGCSSSEEEEECCTTCHHHHHHHH--TTCSEEEECCSCCCHHHHHHCCH
T ss_pred HHHHHHHhCCCCEEEEEeCCCCCCChhH-HhhhccCCeEEEECCCCCHHHHHHHh--hcCCEEEECCcccCccchhhCHH
Confidence 4455555543457777754432211111 11232233332211 22 3455667 778888776643211 10
Q ss_pred --CeecccchHHHHHHHHhCCCeEEEecc
Q 017312 263 --DTANKIGTYSLALCAKFHNILFYVAAP 289 (373)
Q Consensus 263 --~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (373)
--.|-.||..+.-+|+.+++.|+.++.
T Consensus 97 ~~~~~Nv~g~~~l~~a~~~~~~~~v~~SS 125 (348)
T 1oc2_A 97 PFIHTNFIGTYTLLEAARKYDIRFHHVST 125 (348)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeEEEecc
Confidence 025788999999999998886665543
No 191
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=24.72 E-value=1.8e+02 Score=22.33 Aligned_cols=82 Identities=9% Similarity=-0.023 Sum_probs=50.1
Q ss_pred CCCeeEEEEecCCCCCcchHHHHHHHhhC-CCCeE-EEcchHHH-HHHHcC-CCCEEEEcceeEecCCCeecccchHHHH
Q 017312 199 EGVLERAYCSETRPFNQGSRLTAFELVHD-RIPAT-LIADSAAA-ALMKDG-RVSAVIVGADRVAANGDTANKIGTYSLA 274 (373)
Q Consensus 199 ~g~~~~V~v~EsrP~~qG~rlta~~L~~~-GI~vt-lI~Dsa~~-~~m~~~-~vd~VivGAd~I~~nG~v~nkiGT~~lA 274 (373)
.+...+|+++|..|.... .....|.+. |+.+. ...+..-+ ..+++. .+|.||+..+- .+ .-|.-.+.
T Consensus 10 ~~~~~~vlivdd~~~~~~--~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~dlvilD~~l--~~-----~~g~~~~~ 80 (145)
T 3kyj_B 10 HGSPYNVMIVDDAAMMRL--YIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIEM--PV-----MDGMEFLR 80 (145)
T ss_dssp -CCSEEEEEECSCHHHHH--HHHHHHTTCTTEEEEEEESSHHHHHHHHHHCTTCCEEEECTTS--CC-----CTTCHHHH
T ss_pred CCCCCeEEEEcCCHHHHH--HHHHHHHhCCCceEEEEECCHHHHHHHHhcCCCCCEEEEeCCC--CC-----CCHHHHHH
Confidence 578889999998887532 335567776 77765 44443322 234445 79999987643 22 23444555
Q ss_pred HHHHhCCCeEEEecc
Q 017312 275 LCAKFHNILFYVAAP 289 (373)
Q Consensus 275 ~~Ak~~~vPvyV~a~ 289 (373)
.+-+.+..|++++..
T Consensus 81 ~lr~~~~~~iiil~~ 95 (145)
T 3kyj_B 81 HAKLKTRAKICMLSS 95 (145)
T ss_dssp HHHHHCCCEEC-CBS
T ss_pred HHHhcCCCCeEEEEE
Confidence 555566788888764
No 192
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=24.68 E-value=1.9e+02 Score=20.94 Aligned_cols=78 Identities=13% Similarity=0.069 Sum_probs=46.7
Q ss_pred EEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHH-HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHH-hCC
Q 017312 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-FHN 281 (373)
Q Consensus 204 ~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~-~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak-~~~ 281 (373)
+|.++|..|.... .....|.+.|+.+....+..- -..+++...|.|++..+- ++. -|.-.+..+-+ ..+
T Consensus 3 ~ilivdd~~~~~~--~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l--~~~-----~g~~~~~~l~~~~~~ 73 (116)
T 3a10_A 3 RILVVDDEPNIRE--LLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEM--PGI-----SGLEVAGEIRKKKKD 73 (116)
T ss_dssp EEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCC--SSS-----CHHHHHHHHHHHCTT
T ss_pred EEEEEeCCHHHHH--HHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECCC--CCC-----CHHHHHHHHHccCCC
Confidence 5777887776532 234567888998886665432 233455789999887642 221 24333333333 347
Q ss_pred CeEEEeccC
Q 017312 282 ILFYVAAPL 290 (373)
Q Consensus 282 vPvyV~a~~ 290 (373)
+|+++++..
T Consensus 74 ~~ii~~s~~ 82 (116)
T 3a10_A 74 AKIILLTAY 82 (116)
T ss_dssp CCEEEEESC
T ss_pred CeEEEEECC
Confidence 899988654
No 193
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=24.61 E-value=2.1e+02 Score=27.75 Aligned_cols=89 Identities=7% Similarity=0.001 Sum_probs=49.1
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchH-HH-------HHHHhhCCCCeEEEcc-------hHHHHHHHc-CCCCEEEEcc
Q 017312 192 VIRALHSEGVLERAYCSETRPFNQGSR-LT-------AFELVHDRIPATLIAD-------SAAAALMKD-GRVSAVIVGA 255 (373)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~r-lt-------a~~L~~~GI~vtlI~D-------sa~~~~m~~-~~vd~VivGA 255 (373)
++....+.| -+|++.+ .|.+.|.+ +. ...+...|+.+..+.- ..+-..+++ ++...|++..
T Consensus 108 al~all~pG--D~Vl~~~-~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~ 184 (427)
T 3hvy_A 108 ALFGNLRPN--DTMMSIC-GMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQR 184 (427)
T ss_dssp HHHHTCCTT--CEEEECS-SSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEES
T ss_pred HHHHhcCCC--CEEEEeC-CCCchhHHHHhccccchhhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEEC
Confidence 444444334 3566655 35454432 21 0235567888877642 344455543 4566665544
Q ss_pred eeEecCCCeecccch----HHHHHHHHh--CCCeEEEe
Q 017312 256 DRVAANGDTANKIGT----YSLALCAKF--HNILFYVA 287 (373)
Q Consensus 256 d~I~~nG~v~nkiGT----~~lA~~Ak~--~~vPvyV~ 287 (373)
.. |...|..|+ -.++-+||+ ||++++|=
T Consensus 185 s~----gyp~nptg~v~dl~~i~~ia~~~~~g~~livD 218 (427)
T 3hvy_A 185 ST----GYGWRKSLRIAEIAEIIKSIREVNENVIVFVD 218 (427)
T ss_dssp SC----CSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred CC----CCCCCccccHHHHHHHHHHHHHhCCCCEEEEE
Confidence 22 335566665 356678888 89999873
No 194
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=24.53 E-value=1.2e+02 Score=28.14 Aligned_cols=70 Identities=13% Similarity=0.037 Sum_probs=43.0
Q ss_pred ccccHHHHHHHHHHCCC-eeEEE-EecCC-CCCcchHHHHHHHhhCCCCeEEEc---------chHHHHHHHcCCCCEEE
Q 017312 185 GYGTALGVIRALHSEGV-LERAY-CSETR-PFNQGSRLTAFELVHDRIPATLIA---------DSAAAALMKDGRVSAVI 252 (373)
Q Consensus 185 g~~tal~~l~~a~~~g~-~~~V~-v~Esr-P~~qG~rlta~~L~~~GI~vtlI~---------Dsa~~~~m~~~~vd~Vi 252 (373)
|.|+-+.-|..+++.|. ...|. |.=.+ |...+ + ..+.|||+..++ |..+...+++.++|.++
T Consensus 98 g~g~nl~~ll~~~~~g~l~~~i~~Visn~p~~~~~--~----A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv 171 (288)
T 3obi_A 98 QSDHCLADILYRWRVGDLHMIPTAIVSNHPRETFS--G----FDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVV 171 (288)
T ss_dssp SCCHHHHHHHHHHHTTSSCEEEEEEEESSCGGGSC--C----TTTTTCCEEECCCCTTTHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCCCHHHHHHHHHCCCCCeEEEEEEcCCChhHHH--H----HHHcCCCEEEeCCCcccHHHHHHHHHHHHHhcCCCEEE
Confidence 55777776666676665 23333 33334 33221 1 246799999986 34556677778999998
Q ss_pred Ecce-eEec
Q 017312 253 VGAD-RVAA 260 (373)
Q Consensus 253 vGAd-~I~~ 260 (373)
+..= +|++
T Consensus 172 lagy~~il~ 180 (288)
T 3obi_A 172 LARYMQILS 180 (288)
T ss_dssp ESSCCSCCC
T ss_pred hhhhhhhCC
Confidence 8654 4543
No 195
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=24.34 E-value=62 Score=27.76 Aligned_cols=36 Identities=8% Similarity=-0.111 Sum_probs=26.2
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEe
Q 017312 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCS 208 (373)
Q Consensus 168 ~~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~ 208 (373)
++|+++.+||||.= ..+..+...|+++|..+-++..
T Consensus 77 ~~D~vii~S~Sg~n-----~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 77 AVDRVLIFTPDTER-----SDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp TTCEEEEEESCSCC-----HHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCEEEEEeCCCCC-----HHHHHHHHHHHHCCCcEEEEeC
Confidence 78999999999642 2356777888888876655544
No 196
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=24.33 E-value=4.5e+02 Score=25.40 Aligned_cols=85 Identities=13% Similarity=0.078 Sum_probs=46.9
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHH-HHhhCCCCeEEEcc---hHHHHHHHcCCC-CEEEEcceeEe-cCCCee
Q 017312 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAF-ELVHDRIPATLIAD---SAAAALMKDGRV-SAVIVGADRVA-ANGDTA 265 (373)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~-~L~~~GI~vtlI~D---sa~~~~m~~~~v-d~VivGAd~I~-~nG~v~ 265 (373)
+++...+.| -+|++.+ |.+.|..-... .+...|++++++.- ..+...++. +. ..|++ +.+. ..|.+.
T Consensus 145 al~~l~~~G--d~Vi~~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~-~tv~lV~l--e~p~NptG~v~ 217 (445)
T 1qgn_A 145 MLLALVPAG--GHIVTTT--DCYRKTRIFIETILPKMGITATVIDPADVGALELALNQ-KKVNLFFT--ESPTNPFLRCV 217 (445)
T ss_dssp HHHHHSCSS--CEEEEET--TSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHH-SCEEEEEE--ESSCTTTCCCC
T ss_pred HHHHHhCCC--CEEEEcC--CCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhcc-CCCCEEEE--eCCCCCCCccc
Confidence 344344444 3566655 66765322111 25678999998863 234444532 33 55554 2222 224333
Q ss_pred cccchHHHHHHHHhCCCeEEE
Q 017312 266 NKIGTYSLALCAKFHNILFYV 286 (373)
Q Consensus 266 nkiGT~~lA~~Ak~~~vPvyV 286 (373)
. --.++-+|++||++++|
T Consensus 218 -d--l~~I~~la~~~g~~liv 235 (445)
T 1qgn_A 218 -D--IELVSKLCHEKGALVCI 235 (445)
T ss_dssp -C--HHHHHHHHHHTTCEEEE
T ss_pred -C--HHHHHHHHHHcCCEEEE
Confidence 2 24778889999999887
No 197
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=24.31 E-value=1.1e+02 Score=27.98 Aligned_cols=99 Identities=22% Similarity=0.206 Sum_probs=53.0
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEE--Ecc-hHHHHHHHc
Q 017312 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATL--IAD-SAAAALMKD 245 (373)
Q Consensus 169 ~~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtl--I~D-sa~~~~m~~ 245 (373)
+.+||.-+-||-+ | ..+.+.+.++| .+|+++..+|.. .++.+.. +.| ..+..++
T Consensus 19 ~~~vlVtGatG~i-----G--~~l~~~L~~~G--~~V~~~~r~~~~------------~~~~~~~~Dl~d~~~~~~~~-- 75 (347)
T 4id9_A 19 SHMILVTGSAGRV-----G--RAVVAALRTQG--RTVRGFDLRPSG------------TGGEEVVGSLEDGQALSDAI-- 75 (347)
T ss_dssp --CEEEETTTSHH-----H--HHHHHHHHHTT--CCEEEEESSCCS------------SCCSEEESCTTCHHHHHHHH--
T ss_pred CCEEEEECCCChH-----H--HHHHHHHHhCC--CEEEEEeCCCCC------------CCccEEecCcCCHHHHHHHH--
Confidence 4456655544433 2 23445556666 456666544432 1222211 112 2345667
Q ss_pred CCCCEEEEcceeEecCCC------eecccchHHHHHHHHhCCCeEEEeccC
Q 017312 246 GRVSAVIVGADRVAANGD------TANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 246 ~~vd~VivGAd~I~~nG~------v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
.++|.||--|-....+.. -.|-.||..+.-+|+.++++-+|...+
T Consensus 76 ~~~d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS 126 (347)
T 4id9_A 76 MGVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASS 126 (347)
T ss_dssp TTCSEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred hCCCEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 688888866533221111 147789999999999999865554444
No 198
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=24.30 E-value=82 Score=33.24 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHHCCCeeEEEEecCCCCCc--chHHHHHHHhhCCCCeEEE
Q 017312 187 GTALGVIRALHSEGVLERAYCSETRPFNQ--GSRLTAFELVHDRIPATLI 234 (373)
Q Consensus 187 ~tal~~l~~a~~~g~~~~V~v~EsrP~~q--G~rlta~~L~~~GI~vtlI 234 (373)
+.+...|..|.++|++.+|.+.-.....+ ..+. ++.|.++|+.|.+-
T Consensus 384 s~Iv~ALi~AA~rGv~V~vLvel~arfdee~ni~w-a~~Le~aGv~Vv~g 432 (705)
T 2o8r_A 384 SSIISALEAAAQSGKKVSVFVELKARFDEENNLRL-SERMRRSGIRIVYS 432 (705)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECCCSCC----CHHH-HHHHHHHTCEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCcchhhhHHH-HHHHHHCCCEEEEc
Confidence 45666777777788888888774433332 3333 56788888888764
No 199
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=24.22 E-value=1.7e+02 Score=22.67 Aligned_cols=81 Identities=10% Similarity=0.025 Sum_probs=48.2
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhh-CCCCeE-EEcchH-HHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHH
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVH-DRIPAT-LIADSA-AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~-~GI~vt-lI~Dsa-~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak 278 (373)
..+|.++|..|... +.....|.+ .|+.+. ...+.. +-..+++...|.||+..+- .++ -|.-.+..+.+
T Consensus 5 ~~~ILivdd~~~~~--~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l--~~~-----~g~~~~~~l~~ 75 (153)
T 3cz5_A 5 TARIMLVDDHPIVR--EGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTL--PGP-----GGIEATRHIRQ 75 (153)
T ss_dssp CEEEEEECSCHHHH--HHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCC--SSS-----CHHHHHHHHHH
T ss_pred ccEEEEECCcHHHH--HHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCC--CCC-----CHHHHHHHHHH
Confidence 46788888877653 223445766 688876 444433 3344566789999987653 221 23333433433
Q ss_pred h-CCCeEEEeccCc
Q 017312 279 F-HNILFYVAAPLT 291 (373)
Q Consensus 279 ~-~~vPvyV~a~~~ 291 (373)
. .++|+++++...
T Consensus 76 ~~~~~~ii~ls~~~ 89 (153)
T 3cz5_A 76 WDGAARILIFTMHQ 89 (153)
T ss_dssp HCTTCCEEEEESCC
T ss_pred hCCCCeEEEEECCC
Confidence 3 479999987643
No 200
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=23.91 E-value=1.4e+02 Score=22.81 Aligned_cols=82 Identities=7% Similarity=-0.045 Sum_probs=49.4
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHhhCCC--CeEEEcchHHH-HHHHc------CCCCEEEEcceeEecCCCeecccchH
Q 017312 201 VLERAYCSETRPFNQGSRLTAFELVHDRI--PATLIADSAAA-ALMKD------GRVSAVIVGADRVAANGDTANKIGTY 271 (373)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~~L~~~GI--~vtlI~Dsa~~-~~m~~------~~vd~VivGAd~I~~nG~v~nkiGT~ 271 (373)
+..+|.++|..|... +.....|.+.|. .+....+..-+ ..+++ ...|.||+..+- .+ .-|--
T Consensus 6 ~~~~ILivdd~~~~~--~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l--~~-----~~g~~ 76 (143)
T 2qvg_A 6 DKVDILYLEDDEVDI--QSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINI--PK-----MNGIE 76 (143)
T ss_dssp -CCSEEEECCCHHHH--HHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTC--TT-----SCHHH
T ss_pred CCCeEEEEeCCHHHH--HHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCC--CC-----CCHHH
Confidence 456788888877653 223556888887 77777765433 33443 578999887642 22 12333
Q ss_pred HHHHHHHh---CCCeEEEeccCc
Q 017312 272 SLALCAKF---HNILFYVAAPLT 291 (373)
Q Consensus 272 ~lA~~Ak~---~~vPvyV~a~~~ 291 (373)
.+..+.+. .++|+++++...
T Consensus 77 ~~~~l~~~~~~~~~~ii~ls~~~ 99 (143)
T 2qvg_A 77 FLKELRDDSSFTDIEVFVLTAAY 99 (143)
T ss_dssp HHHHHTTSGGGTTCEEEEEESCC
T ss_pred HHHHHHcCccccCCcEEEEeCCC
Confidence 33444433 479999987643
No 201
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=23.91 E-value=1.7e+02 Score=30.69 Aligned_cols=86 Identities=5% Similarity=0.013 Sum_probs=54.5
Q ss_pred EEEEecCCC-CC-----cchHHHHHHHhhCCCCeEEEcchHHHHHHHcC--CCCEEEEcceeEecCCCeecccchHHHHH
Q 017312 204 RAYCSETRP-FN-----QGSRLTAFELVHDRIPATLIADSAAAALMKDG--RVSAVIVGADRVAANGDTANKIGTYSLAL 275 (373)
Q Consensus 204 ~V~v~EsrP-~~-----qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~--~vd~VivGAd~I~~nG~v~nkiGT~~lA~ 275 (373)
+|.++|..+ .. .+.+..+..|.+.|..|....|..-+..+.+. ++|.||+--+- ++ .-.+.-|-..+..
T Consensus 2 ~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~~~d~vilDi~l--p~-~~~~~~G~~ll~~ 78 (755)
T 2vyc_A 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQM--EH-PDEHQNVRQLIGK 78 (755)
T ss_dssp EEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECCC--CS-HHHHHHHHHHHHH
T ss_pred eEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCcEEEEeCCC--Cc-ccccccHHHHHHH
Confidence 577788777 43 12455677899999999999988766554433 48999886542 22 1112233333443
Q ss_pred HHHh-CCCeEEEeccCcc
Q 017312 276 CAKF-HNILFYVAAPLTS 292 (373)
Q Consensus 276 ~Ak~-~~vPvyV~a~~~k 292 (373)
+-+. .++||++++....
T Consensus 79 iR~~~~~iPIi~lTa~~~ 96 (755)
T 2vyc_A 79 LHERQQNVPVFLLGDREK 96 (755)
T ss_dssp HHHHSTTCCEEEEECHHH
T ss_pred HHHhCCCCCEEEEecCCc
Confidence 3333 4799999988654
No 202
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=23.88 E-value=73 Score=26.17 Aligned_cols=46 Identities=17% Similarity=0.155 Sum_probs=32.4
Q ss_pred HHHHHHHHHHCCC-eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcch
Q 017312 189 ALGVIRALHSEGV-LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS 237 (373)
Q Consensus 189 al~~l~~a~~~g~-~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Ds 237 (373)
+..+.+.+.+.|. .++|++--.-| |.+-..+.|...|+.+..|.|.
T Consensus 65 a~~~~~~~~~~Gi~~v~V~vkG~G~---Gre~airaL~~~Gl~I~~I~Dv 111 (129)
T 2vqe_K 65 ALDAAKKAMAYGMQSVDVIVRGTGA---GREQAIRALQASGLQVKSIVDD 111 (129)
T ss_dssp HHHHHHHHHTTTCCEEEEEEESCCT---THHHHHHHHHTSSSEEEECEEC
T ss_pred HHHHHHHHHHhCCeEEEEEEECCCC---CHHHHHHHHHHCCCEEEEEEEc
Confidence 4556677777774 57777755433 5554556788999999999884
No 203
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=23.86 E-value=2.3e+02 Score=25.78 Aligned_cols=88 Identities=10% Similarity=0.070 Sum_probs=44.3
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcc-----------hHHHHHHHcCCCCEEEEcceeEec
Q 017312 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD-----------SAAAALMKDGRVSAVIVGADRVAA 260 (373)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~D-----------sa~~~~m~~~~vd~VivGAd~I~~ 260 (373)
+++.+.+.| -+|++. .|.+.+... .+...|..+..++- ..+-..+++.+...|++ ..--.+
T Consensus 101 ~~~~l~~~g--d~vl~~--~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i-~~p~np 172 (391)
T 3dzz_A 101 MVRQFTSPG--DQILVQ--EPVYNMFYS---VIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVF-CNPHNP 172 (391)
T ss_dssp HHHHHSCTT--CEEEEC--SSCCHHHHH---HHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEE-ESSBTT
T ss_pred HHHHhCCCC--CeEEEC--CCCcHHHHH---HHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEE-ECCCCC
Confidence 344443333 345543 366655322 34456766555431 23444453345555544 222222
Q ss_pred CCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 261 NGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 261 nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
.|.+...----.++-+|++||+++++=
T Consensus 173 tG~~~~~~~l~~i~~~~~~~~~~li~D 199 (391)
T 3dzz_A 173 IGYAWSEEEVKRIAELCAKHQVLLISD 199 (391)
T ss_dssp TTBCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcccCHHHHHHHHHHHHHCCCEEEEe
Confidence 344443333445667899999998873
No 204
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=23.76 E-value=1.8e+02 Score=21.41 Aligned_cols=78 Identities=8% Similarity=0.055 Sum_probs=45.1
Q ss_pred EEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHH-HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHh---
Q 017312 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF--- 279 (373)
Q Consensus 204 ~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~-~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~--- 279 (373)
+|.++|..|... +.....|...|..+....+..- -..+++...|.|++..+ +++. -|.-.+..+-+.
T Consensus 3 ~ilivdd~~~~~--~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~~ 73 (124)
T 1mb3_A 3 KVLIVEDNELNM--KLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQ--LPEI-----SGLEVTKWLKEDDDL 73 (124)
T ss_dssp EEEEECSCHHHH--HHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESB--CSSS-----BHHHHHHHHHHSTTT
T ss_pred EEEEEcCCHHHH--HHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCC-----CHHHHHHHHHcCccc
Confidence 577788777643 2235567788998876665432 23345567899988654 2322 233333333332
Q ss_pred CCCeEEEeccC
Q 017312 280 HNILFYVAAPL 290 (373)
Q Consensus 280 ~~vPvyV~a~~ 290 (373)
..+|+++++..
T Consensus 74 ~~~~ii~~s~~ 84 (124)
T 1mb3_A 74 AHIPVVAVTAF 84 (124)
T ss_dssp TTSCEEEEC--
T ss_pred cCCcEEEEECC
Confidence 36899998654
No 205
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*
Probab=23.72 E-value=1.9e+02 Score=25.16 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=45.0
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEE--cc-hHHHHHHHcCCCCEEEEcceeEecCCCeeccc
Q 017312 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--AD-SAAAALMKDGRVSAVIVGADRVAANGDTANKI 268 (373)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI--~D-sa~~~~m~~~~vd~VivGAd~I~~nG~v~nki 268 (373)
+++.+.++....+|+++.-+|.. . .+|...++.+... .| ..+..++ .++|.|+--|-.- .+ .|-.
T Consensus 15 l~~~L~~~~~g~~V~~~~r~~~~-~-----~~~~~~~~~~~~~D~~d~~~~~~~~--~~~d~vi~~a~~~-~~---~~~~ 82 (286)
T 2zcu_A 15 VIESLMKTVPASQIVAIVRNPAK-A-----QALAAQGITVRQADYGDEAALTSAL--QGVEKLLLISSSE-VG---QRAP 82 (286)
T ss_dssp HHHHHTTTSCGGGEEEEESCTTT-C-----HHHHHTTCEEEECCTTCHHHHHHHT--TTCSEEEECC------------C
T ss_pred HHHHHHhhCCCceEEEEEcChHh-h-----hhhhcCCCeEEEcCCCCHHHHHHHH--hCCCEEEEeCCCC-ch---HHHH
Confidence 44555554113456665544321 1 1344456543321 12 3456667 6788887655321 11 3667
Q ss_pred chHHHHHHHHhCCCeEEEeccC
Q 017312 269 GTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 269 GT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
||..+.-+|+..+++-+|...+
T Consensus 83 ~~~~l~~a~~~~~~~~~v~~Ss 104 (286)
T 2zcu_A 83 QHRNVINAAKAAGVKFIAYTSL 104 (286)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEECC
Confidence 8888888888888875555443
No 206
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=23.69 E-value=48 Score=28.62 Aligned_cols=103 Identities=11% Similarity=-0.091 Sum_probs=53.8
Q ss_pred CCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcc-hHHHHHHHcCCCCEEEEcce
Q 017312 178 TGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD-SAAAALMKDGRVSAVIVGAD 256 (373)
Q Consensus 178 sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~D-sa~~~~m~~~~vd~VivGAd 256 (373)
||+.++ | -+..+++.+.+.|...+|+++++.-.+=.. .+-..|. | +|..-.| ..+.++=-....|.++|---
T Consensus 13 TGs~aa--~-k~~~ll~~L~~~g~~V~vv~T~~A~~fi~~-~~l~~l~--~-~v~~~~~~~~~~hi~l~~~aD~~vVaPa 85 (175)
T 3qjg_A 13 CGSVNS--I-NISHYIIELKSKFDEVNVIASTNGRKFING-EILKQFC--D-NYYDEFEDPFLNHVDIANKHDKIIILPA 85 (175)
T ss_dssp CSSGGG--G-GHHHHHHHHTTTCSEEEEEECTGGGGGSCH-HHHHHHC--S-CEECTTTCTTCCHHHHHHTCSEEEEEEE
T ss_pred eCHHHH--H-HHHHHHHHHHHCCCEEEEEECcCHHHHhhH-HHHHHhc--C-CEEecCCCCccccccccchhCEEEEeeC
Confidence 466543 2 256788888888989999998875433222 2223343 3 4322112 11112211157898887642
Q ss_pred eEecCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 257 RVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 257 ~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
..-.=+.++|-+.--.+..++...++|++++
T Consensus 86 TanTlakiA~GiaDnLlt~~~la~~~pvvl~ 116 (175)
T 3qjg_A 86 TSNTINKIANGICDNLLLTICHTAFEKLSIF 116 (175)
T ss_dssp CHHHHHHHHTTCCCSHHHHHHHTCGGGEEEE
T ss_pred CHHHHHHHHccccCCHHHHHHHHcCCCEEEE
Confidence 2211122233333334444555679999987
No 207
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=23.59 E-value=1.2e+02 Score=25.51 Aligned_cols=88 Identities=9% Similarity=-0.001 Sum_probs=51.4
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEE--cchHHHHHHHcCCCCEEEEcceeEe-cCCCeecc
Q 017312 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--ADSAAAALMKDGRVSAVIVGADRVA-ANGDTANK 267 (373)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI--~Dsa~~~~m~~~~vd~VivGAd~I~-~nG~v~nk 267 (373)
.+.+.+.++|. +|+++.-+| .++ .+|...++.+... .|... ..+ .++|.||--|-... ..-.-.|-
T Consensus 15 ~l~~~L~~~g~--~V~~~~R~~----~~~--~~~~~~~~~~~~~D~~d~~~-~~~--~~~d~vi~~ag~~~~~~~~~~n~ 83 (224)
T 3h2s_A 15 AIVAEARRRGH--EVLAVVRDP----QKA--ADRLGATVATLVKEPLVLTE-ADL--DSVDAVVDALSVPWGSGRGYLHL 83 (224)
T ss_dssp HHHHHHHHTTC--EEEEEESCH----HHH--HHHTCTTSEEEECCGGGCCH-HHH--TTCSEEEECCCCCTTSSCTHHHH
T ss_pred HHHHHHHHCCC--EEEEEEecc----ccc--ccccCCCceEEecccccccH-hhc--ccCCEEEECCccCCCcchhhHHH
Confidence 35566666674 566654332 122 2455556544321 22223 556 78898877664321 11223588
Q ss_pred cchHHHHHHHHhCCCeEEEecc
Q 017312 268 IGTYSLALCAKFHNILFYVAAP 289 (373)
Q Consensus 268 iGT~~lA~~Ak~~~vPvyV~a~ 289 (373)
.||..+.-+|+..+..|+.++.
T Consensus 84 ~~~~~l~~a~~~~~~~~v~~SS 105 (224)
T 3h2s_A 84 DFATHLVSLLRNSDTLAVFILG 105 (224)
T ss_dssp HHHHHHHHTCTTCCCEEEEECC
T ss_pred HHHHHHHHHHHHcCCcEEEEec
Confidence 9999999999999977777653
No 208
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=23.27 E-value=1.8e+02 Score=22.05 Aligned_cols=82 Identities=10% Similarity=0.043 Sum_probs=49.4
Q ss_pred CeeEEEEecCCCCCcchHHHHHHHhhCCC--CeEEEcchHHH-HHHHc----------CCCCEEEEcceeEecCCCeecc
Q 017312 201 VLERAYCSETRPFNQGSRLTAFELVHDRI--PATLIADSAAA-ALMKD----------GRVSAVIVGADRVAANGDTANK 267 (373)
Q Consensus 201 ~~~~V~v~EsrP~~qG~rlta~~L~~~GI--~vtlI~Dsa~~-~~m~~----------~~vd~VivGAd~I~~nG~v~nk 267 (373)
...+|.++|..|... +.....|.+.|. .+....+..-+ ..+++ ...|.||+..+- .+ .
T Consensus 5 ~~~~iLivdd~~~~~--~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l--~~-----~ 75 (149)
T 1k66_A 5 ATQPLLVVEDSDEDF--STFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNL--PG-----T 75 (149)
T ss_dssp TTSCEEEECCCHHHH--HHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCC--SS-----S
T ss_pred CCccEEEEECCHHHH--HHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCC--CC-----C
Confidence 456788888877653 233557888888 67776665432 33443 678999887643 22 1
Q ss_pred cchHHHHHHHHh---CCCeEEEeccCc
Q 017312 268 IGTYSLALCAKF---HNILFYVAAPLT 291 (373)
Q Consensus 268 iGT~~lA~~Ak~---~~vPvyV~a~~~ 291 (373)
-|--.+..+-+. .++|+++++...
T Consensus 76 ~g~~~~~~l~~~~~~~~~~ii~~t~~~ 102 (149)
T 1k66_A 76 DGREVLQEIKQDEVLKKIPVVIMTTSS 102 (149)
T ss_dssp CHHHHHHHHTTSTTGGGSCEEEEESCC
T ss_pred CHHHHHHHHHhCcccCCCeEEEEeCCC
Confidence 233333333333 468999986643
No 209
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=23.23 E-value=2.1e+02 Score=22.11 Aligned_cols=81 Identities=10% Similarity=0.016 Sum_probs=43.7
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhhC-CC-CeEEEcchH-HHHHHHc-CCCCEEEEcceeEecCCCeecccchHHHHHHH
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVHD-RI-PATLIADSA-AAALMKD-GRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~~-GI-~vtlI~Dsa-~~~~m~~-~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~A 277 (373)
.++|.++|..|... +.....|.+. |. .+....+.. +-..+++ ..+|.||+..+- .+. -|--.+..+-
T Consensus 3 ~~~iLivdd~~~~~--~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l--~~~-----~g~~~~~~l~ 73 (154)
T 2qsj_A 3 LTVVLIVDDHHLIR--AGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNL--PDA-----EAIDGLVRLK 73 (154)
T ss_dssp CEEEEEECSCHHHH--HHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC-------------CHHHHHHHH
T ss_pred ccEEEEEcCCHHHH--HHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCC--CCC-----chHHHHHHHH
Confidence 46788888877653 2234567766 77 455555433 3334555 689999998753 221 2433344443
Q ss_pred Hh-CCCeEEEeccCc
Q 017312 278 KF-HNILFYVAAPLT 291 (373)
Q Consensus 278 k~-~~vPvyV~a~~~ 291 (373)
+. .++|+++++...
T Consensus 74 ~~~~~~~ii~ls~~~ 88 (154)
T 2qsj_A 74 RFDPSNAVALISGET 88 (154)
T ss_dssp HHCTTSEEEEC----
T ss_pred HhCCCCeEEEEeCCC
Confidence 33 479999987653
No 210
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=23.23 E-value=2e+02 Score=21.91 Aligned_cols=79 Identities=10% Similarity=0.002 Sum_probs=46.5
Q ss_pred eEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchH-HHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHH-hC
Q 017312 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA-AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-FH 280 (373)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa-~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak-~~ 280 (373)
.+|.++|..|.... .....|...|..|....+.. +-..+++.+.|.||+..+- +++ -|.-.+..+-+ ..
T Consensus 5 ~~ILivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvllD~~l--~~~-----~g~~l~~~l~~~~~ 75 (137)
T 3cfy_A 5 PRVLLVEDSTSLAI--LYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKL--PDM-----SGEDVLDWINQNDI 75 (137)
T ss_dssp CEEEEECSCTTHHH--HHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSBC--SSS-----BHHHHHHHHHHTTC
T ss_pred ceEEEEeCCHHHHH--HHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEEecCC--CCC-----CHHHHHHHHHhcCC
Confidence 36888888777532 23456777888887665543 2233455678999886542 322 23323333322 35
Q ss_pred CCeEEEeccC
Q 017312 281 NILFYVAAPL 290 (373)
Q Consensus 281 ~vPvyV~a~~ 290 (373)
.+|+++++..
T Consensus 76 ~~~ii~ls~~ 85 (137)
T 3cfy_A 76 PTSVIIATAH 85 (137)
T ss_dssp CCEEEEEESS
T ss_pred CCCEEEEEec
Confidence 7899988654
No 211
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=23.21 E-value=3.3e+02 Score=24.89 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=43.1
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcch-------HHHHHHHcCCCCEEEEcceeEecCCCe
Q 017312 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS-------AAAALMKDGRVSAVIVGADRVAANGDT 264 (373)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Ds-------a~~~~m~~~~vd~VivGAd~I~~nG~v 264 (373)
+++.+.+.|. +|++.+ |.+.+.. ..+...|.++..++-. -...+-+ .++..|++.. ---+.|.+
T Consensus 107 ~~~~l~~~gd--~vl~~~--p~~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~-~~~~~v~i~~-p~nptG~~ 177 (391)
T 3h14_A 107 AFTALFDSGD--RVGIGA--PGYPSYR---QILRALGLVPVDLPTAPENRLQPVPADFAG-LDLAGLMVAS-PANPTGTM 177 (391)
T ss_dssp HHHHHCCTTC--EEEEEE--SCCHHHH---HHHHHTTCEEEEEECCGGGTTSCCHHHHTT-SCCSEEEEES-SCTTTCCC
T ss_pred HHHHhcCCCC--EEEEcC--CCCccHH---HHHHHcCCEEEEeecCcccCCCCCHHHHHh-cCCeEEEECC-CCCCCCcc
Confidence 3444433343 455543 6665543 2355678887776522 2233331 1455554421 11112333
Q ss_pred ecccchHHHHHHHHhCCCeEEE
Q 017312 265 ANKIGTYSLALCAKFHNILFYV 286 (373)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~vPvyV 286 (373)
...----.++-+|++||+++++
T Consensus 178 ~~~~~l~~l~~~~~~~~~~li~ 199 (391)
T 3h14_A 178 LDHAAMGALIEAAQAQGASFIS 199 (391)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHHHHcCCEEEE
Confidence 3222234567789999998887
No 212
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=22.96 E-value=3e+02 Score=26.63 Aligned_cols=90 Identities=12% Similarity=0.080 Sum_probs=49.5
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchH-HH-------HHHHhhCCCCeEEEcc--------hHHHHHHHc-CCCCEEEE
Q 017312 191 GVIRALHSEGVLERAYCSETRPFNQGSR-LT-------AFELVHDRIPATLIAD--------SAAAALMKD-GRVSAVIV 253 (373)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~r-lt-------a~~L~~~GI~vtlI~D--------sa~~~~m~~-~~vd~Viv 253 (373)
.++....+.| -+|++.+. |.+.+.+ +. ...+...|+.+..+.- ..+...+++ ++...|++
T Consensus 106 ~al~all~pG--D~Vl~~~~-~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i 182 (427)
T 3i16_A 106 AALFGNLRPG--NTMLSVCG-EPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHI 182 (427)
T ss_dssp HHHHHHCCTT--CEEEESSS-SCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEE
T ss_pred HHHHHHhCCC--CEEEEeCC-CccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEE
Confidence 3444444444 35666552 4444432 21 0235567988887752 334445542 45555544
Q ss_pred cceeEecCCCeecccchH----HHHHHHHh--CCCeEEEe
Q 017312 254 GADRVAANGDTANKIGTY----SLALCAKF--HNILFYVA 287 (373)
Q Consensus 254 GAd~I~~nG~v~nkiGT~----~lA~~Ak~--~~vPvyV~ 287 (373)
.. +-|...|..|+. .++-+||+ +|++++|=
T Consensus 183 ~~----s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD 218 (427)
T 3i16_A 183 QR----STGYGWRRALLIEDIKSIVDCVKNIRKDIICFVD 218 (427)
T ss_dssp EC----SCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred Ec----CCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEE
Confidence 32 124466777763 46678899 99999874
No 213
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=22.89 E-value=1.5e+02 Score=21.97 Aligned_cols=79 Identities=11% Similarity=0.021 Sum_probs=46.3
Q ss_pred eEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHH-HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHH-hC
Q 017312 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-FH 280 (373)
Q Consensus 203 ~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~-~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak-~~ 280 (373)
.+|.++|..|... ......|.+.|+.+....+..- -..+++...|.|++..+- ++. -|--.+..+-+ ..
T Consensus 4 ~~ilivdd~~~~~--~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l--~~~-----~g~~~~~~l~~~~~ 74 (124)
T 1srr_A 4 EKILIVDDQSGIR--ILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKI--PGM-----DGIEILKRMKVIDE 74 (124)
T ss_dssp CEEEEECSCHHHH--HHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESCC--TTC-----CHHHHHHHHHHHCT
T ss_pred ceEEEEeCCHHHH--HHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecCC--CCC-----CHHHHHHHHHHhCC
Confidence 3678888776543 2234567778988876665432 233445678999886542 221 23222333322 45
Q ss_pred CCeEEEeccC
Q 017312 281 NILFYVAAPL 290 (373)
Q Consensus 281 ~vPvyV~a~~ 290 (373)
++|+++++..
T Consensus 75 ~~~ii~~s~~ 84 (124)
T 1srr_A 75 NIRVIIMTAY 84 (124)
T ss_dssp TCEEEEEESS
T ss_pred CCCEEEEEcc
Confidence 7999998654
No 214
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=22.85 E-value=2.3e+02 Score=23.20 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=0.0
Q ss_pred hHHHHHHHhhCCCCeEEEcchHHHH----HHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCcc
Q 017312 217 SRLTAFELVHDRIPATLIADSAAAA----LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTS 292 (373)
Q Consensus 217 ~rlta~~L~~~GI~vtlI~Dsa~~~----~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~k 292 (373)
++..+..|...|+++..+.|..... .+ .+=|.||+ |...| +..-+..++-.||..|+|+++++....
T Consensus 64 a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~--~~~d~vI~----iS~sG---~t~~~~~~~~~ak~~g~~vi~IT~~~~ 134 (183)
T 2xhz_A 64 GRKMAATFASTGTPSFFVHPGEAAHGDLGMV--TPQDVVIA----ISNSG---ESSEITALIPVLKRLHVPLICITGRPE 134 (183)
T ss_dssp HHHHHHHHHTTTCCEEECCTTHHHHHTSTTC--CTTCEEEE----ECSSS---CCHHHHHHHHHHHTTTCCEEEEESCTT
T ss_pred HHHHHHHHHhcCceEEEeCchHHhhhhhccC--CCCCEEEE----EeCCC---CCHHHHHHHHHHHHCCCCEEEEECCCC
No 215
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=22.45 E-value=1.4e+02 Score=27.09 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=25.6
Q ss_pred CCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEecc
Q 017312 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (373)
Q Consensus 246 ~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (373)
+++|.+++..|... ++ ....+..+++.+++|+|...+
T Consensus 192 ~~~d~i~~~~d~~~-----~~--~~~~i~~~~~~~~iPv~~~~~ 228 (302)
T 3lkv_A 192 EKSDVIYALIDNTV-----AS--AIEGMIVAANQAKTPVFGAAT 228 (302)
T ss_dssp TTCSEEEECSCHHH-----HH--THHHHHHHHHHTTCCEEESSH
T ss_pred CCeeEEEEeCCcch-----hh--HHHHHHHHHhhcCCceeeccc
Confidence 78999887765433 22 234556788999999998644
No 216
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Probab=22.28 E-value=2.1e+02 Score=28.53 Aligned_cols=98 Identities=21% Similarity=0.174 Sum_probs=56.6
Q ss_pred HHHHHHHCCCeeEEEEecCC-CCCcchHHHHHHHhhCCCCeEEEc----c-hHHHHHHHc----CCCCEEEEcceeEecC
Q 017312 192 VIRALHSEGVLERAYCSETR-PFNQGSRLTAFELVHDRIPATLIA----D-SAAAALMKD----GRVSAVIVGADRVAAN 261 (373)
Q Consensus 192 ~l~~a~~~g~~~~V~v~Esr-P~~qG~rlta~~L~~~GI~vtlI~----D-sa~~~~m~~----~~vd~VivGAd~I~~n 261 (373)
+.+.+.++|.. +|+++--+ +..++..-...+|.+.|..++++. | .++..++++ +.+|.||-.|-....+
T Consensus 255 lA~~La~~Ga~-~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g~ld~vVh~AGv~~~~ 333 (496)
T 3mje_A 255 VARRLAEQGAA-HLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDAPLTAVFHSAGVAHDD 333 (496)
T ss_dssp HHHHHHHTTCS-EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTSCEEEEEECCCCCCSC
T ss_pred HHHHHHHCCCc-EEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhCCCeEEEECCcccCCC
Confidence 34555566653 33333322 233343334567889998888762 2 235555532 3578777766433234
Q ss_pred CCe-------------ecccchHHHHHHHHhCCCeEEEeccC
Q 017312 262 GDT-------------ANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 262 G~v-------------~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
+.+ .|-.|++.+.-+.+.++..++|...+
T Consensus 334 ~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS 375 (496)
T 3mje_A 334 APVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSS 375 (496)
T ss_dssp CCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeC
Confidence 332 35568888888888888777776544
No 217
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=22.27 E-value=1.7e+02 Score=27.00 Aligned_cols=52 Identities=8% Similarity=0.029 Sum_probs=30.3
Q ss_pred CeeEEE-EecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcc
Q 017312 201 VLERAY-CSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGA 255 (373)
Q Consensus 201 ~~~~V~-v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGA 255 (373)
..++|. |++..|.....++ +..+.+.|+++....|- --+++.+++|.|++..
T Consensus 23 ~~~~lvav~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~ll~~~~vD~V~I~t 75 (337)
T 3ip3_A 23 EECSITGIAPGVPEEDLSKL-EKAISEMNIKPKKYNNW--WEMLEKEKPDILVINT 75 (337)
T ss_dssp TTEEEEEEECSSTTCCCHHH-HHHHHTTTCCCEECSSH--HHHHHHHCCSEEEECS
T ss_pred CCcEEEEEecCCchhhHHHH-HHHHHHcCCCCcccCCH--HHHhcCCCCCEEEEeC
Confidence 344444 5666553223333 44456678876666653 3445557899999863
No 218
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=22.00 E-value=75 Score=26.99 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=39.0
Q ss_pred HHHHhhCCCCeEEEcchHHHH----HHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEecc
Q 017312 221 AFELVHDRIPATLIADSAAAA----LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (373)
Q Consensus 221 a~~L~~~GI~vtlI~Dsa~~~----~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (373)
+..|...|+++..+.|+...+ .+ .+=|.||+ |...|.. .-+..++-.||..|+|+++++.
T Consensus 64 ~~~l~~~g~~~~~~~~~~~~~~~~~~~--~~~dvvI~----iS~sG~t---~~~~~~~~~ak~~g~~vi~IT~ 127 (201)
T 3fxa_A 64 VHSFNCIERPAVFLTPSDAVHGTLGVL--QKEDILIL----ISKGGNT---GELLNLIPACKTKGSTLIGVTE 127 (201)
T ss_dssp HHHHHHTTCCEEECCHHHHTTTGGGGC--CTTCEEEE----ECSSSCC---HHHHTTHHHHHHHTCEEEEEES
T ss_pred HHHHHhcCCcEEEeCchHHHhhhhhcC--CCCCEEEE----EeCCCCC---HHHHHHHHHHHHcCCeEEEEEC
Confidence 345666788888888764322 12 34466554 3345643 3356677889999999999865
No 219
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=21.88 E-value=1.6e+02 Score=25.89 Aligned_cols=82 Identities=13% Similarity=0.024 Sum_probs=50.9
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH-HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHH-H
Q 017312 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALC-A 277 (373)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~-A 277 (373)
....+|.++|..|... .+....|.+.|..|....+..-+ ..+++..+|.||+..+- ++. -|--.+..+ .
T Consensus 127 ~~~~~ILivdd~~~~~--~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlvl~D~~m--p~~-----~G~~l~~~ir~ 197 (254)
T 2ayx_A 127 NDDMMILVVDDHPINR--RLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNM--PNM-----DGYRLTQRIRQ 197 (254)
T ss_dssp CCCCEEEEEESSHHHH--HHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEESS--CSS-----CCHHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHH--HHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcCCC--CCC-----CHHHHHHHHHh
Confidence 3457899999888764 23455688889998877765432 34556789999886543 321 232222222 2
Q ss_pred HhCCCeEEEeccC
Q 017312 278 KFHNILFYVAAPL 290 (373)
Q Consensus 278 k~~~vPvyV~a~~ 290 (373)
...++|+++++..
T Consensus 198 ~~~~~piI~lt~~ 210 (254)
T 2ayx_A 198 LGLTLPVIGVTAN 210 (254)
T ss_dssp HHCCSCEEEEESS
T ss_pred cCCCCcEEEEECC
Confidence 3357999987653
No 220
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=21.87 E-value=1.8e+02 Score=22.53 Aligned_cols=83 Identities=11% Similarity=0.071 Sum_probs=48.8
Q ss_pred CCeeEEEEecCCCCCcchHHHHHHHhhCC--CCeEEEcchHH-HHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHH
Q 017312 200 GVLERAYCSETRPFNQGSRLTAFELVHDR--IPATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALC 276 (373)
Q Consensus 200 g~~~~V~v~EsrP~~qG~rlta~~L~~~G--I~vtlI~Dsa~-~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~ 276 (373)
+...+|.++|..|... +.....|.+.| ..+....+..- -..+++...|.||+..+- .++ -|.-.+..+
T Consensus 18 ~~m~~iLivdd~~~~~--~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l--~~~-----~g~~~~~~l 88 (150)
T 4e7p_A 18 GSHMKVLVAEDQSMLR--DAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEM--PVK-----TGLEVLEWI 88 (150)
T ss_dssp --CEEEEEECSCHHHH--HHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSC--SSS-----CHHHHHHHH
T ss_pred CCccEEEEEcCCHHHH--HHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCC--CCC-----cHHHHHHHH
Confidence 4568899999877653 23345677776 45555555443 334566789999887643 222 233333333
Q ss_pred HH-hCCCeEEEeccCc
Q 017312 277 AK-FHNILFYVAAPLT 291 (373)
Q Consensus 277 Ak-~~~vPvyV~a~~~ 291 (373)
-+ ..++|+++++...
T Consensus 89 ~~~~~~~~ii~ls~~~ 104 (150)
T 4e7p_A 89 RSEKLETKVVVVTTFK 104 (150)
T ss_dssp HHTTCSCEEEEEESCC
T ss_pred HHhCCCCeEEEEeCCC
Confidence 33 3479999987644
No 221
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=21.63 E-value=4.7e+02 Score=23.92 Aligned_cols=16 Identities=6% Similarity=-0.135 Sum_probs=13.0
Q ss_pred HHHHHHHHhCCCeEEE
Q 017312 271 YSLALCAKFHNILFYV 286 (373)
Q Consensus 271 ~~lA~~Ak~~~vPvyV 286 (373)
-.++-+|++||+++++
T Consensus 207 ~~l~~l~~~~~~~li~ 222 (397)
T 2ord_A 207 EEARKLCDEYDALLVF 222 (397)
T ss_dssp HHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHcCCEEEE
Confidence 4567789999998887
No 222
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=21.63 E-value=81 Score=24.22 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=26.9
Q ss_pred HHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 243 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 243 m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
++++++..||+..|. -.| +...+-..|++++||+|..
T Consensus 28 i~~gka~lViiA~D~-~~~-------~~~~l~~~c~~~~vp~~~~ 64 (101)
T 1w41_A 28 AKMGGAKLIIVARNA-RPD-------IKEDIEYYARLSGIPVYEF 64 (101)
T ss_dssp HHHTCCSEEEEETTS-CHH-------HHHHHHHHHHHHTCCEEEE
T ss_pred HHcCCCcEEEEeCCC-CHH-------HHHHHHHHHHhcCCCEEEe
Confidence 455899999988882 222 3455666799999999875
No 223
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=21.53 E-value=3.8e+02 Score=23.80 Aligned_cols=98 Identities=13% Similarity=0.068 Sum_probs=52.9
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCC-CC---cchHHHHHHHhhCCCCeEEE--cc-hHHHHHH
Q 017312 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRP-FN---QGSRLTAFELVHDRIPATLI--AD-SAAAALM 243 (373)
Q Consensus 171 ~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP-~~---qG~rlta~~L~~~GI~vtlI--~D-sa~~~~m 243 (373)
+||..+-+|.+ | ..+++.+.++|. +|+++.-+| .. +..+. ..+|...|+.+... .| ..+...+
T Consensus 6 ~ilVtGatG~i-----G--~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~-l~~~~~~~v~~v~~D~~d~~~l~~a~ 75 (321)
T 3c1o_A 6 KIIIYGGTGYI-----G--KFMVRASLSFSH--PTFIYARPLTPDSTPSSVQL-REEFRSMGVTIIEGEMEEHEKMVSVL 75 (321)
T ss_dssp CEEEETTTSTT-----H--HHHHHHHHHTTC--CEEEEECCCCTTCCHHHHHH-HHHHHHTTCEEEECCTTCHHHHHHHH
T ss_pred EEEEEcCCchh-----H--HHHHHHHHhCCC--cEEEEECCcccccChHHHHH-HHHhhcCCcEEEEecCCCHHHHHHHH
Confidence 45555544433 2 234455555674 455554333 11 11111 12355667654432 22 3456667
Q ss_pred HcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCC-CeEEEe
Q 017312 244 KDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN-ILFYVA 287 (373)
Q Consensus 244 ~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~-vPvyV~ 287 (373)
..+|.||.-| +..+-.++..+.-+|+..| ++-+|.
T Consensus 76 --~~~d~vi~~a-------~~~~~~~~~~l~~aa~~~g~v~~~v~ 111 (321)
T 3c1o_A 76 --KQVDIVISAL-------PFPMISSQIHIINAIKAAGNIKRFLP 111 (321)
T ss_dssp --TTCSEEEECC-------CGGGSGGGHHHHHHHHHHCCCCEEEC
T ss_pred --cCCCEEEECC-------CccchhhHHHHHHHHHHhCCccEEec
Confidence 6677666543 2233678889998999998 888773
No 224
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=21.52 E-value=1.1e+02 Score=25.34 Aligned_cols=91 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHHHHHHcCCCCEEEEcceeEecCCCeeccc
Q 017312 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKI 268 (373)
Q Consensus 189 al~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nki 268 (373)
+..+.....+.+ +||+.=..--.--+...+..|...|+++..+.|. ....+ .+=|.||+ |...|.. .
T Consensus 30 i~~~~~~i~~a~---~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~-~~~~~--~~~d~vi~----iS~sG~t---~ 96 (180)
T 1jeo_A 30 LDSLIDRIIKAK---KIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGET-TTPSY--EKDDLLIL----ISGSGRT---E 96 (180)
T ss_dssp HHHHHHHHHHCS---SEEEECCHHHHHHHHHHHHHHHHTTCCEEETTST-TCCCC--CTTCEEEE----EESSSCC---H
T ss_pred HHHHHHHHHhCC---EEEEEeecHHHHHHHHHHHHHHHcCCeEEEeCCC-ccccC--CCCCEEEE----EeCCCCc---H
Q ss_pred chHHHHHHHHhCCCeEEEeccCcc
Q 017312 269 GTYSLALCAKFHNILFYVAAPLTS 292 (373)
Q Consensus 269 GT~~lA~~Ak~~~vPvyV~a~~~k 292 (373)
-+..++-.||..|+|++.++....
T Consensus 97 ~~~~~~~~ak~~g~~vi~IT~~~~ 120 (180)
T 1jeo_A 97 SVLTVAKKAKNINNNIIAIVCECG 120 (180)
T ss_dssp HHHHHHHHHHTTCSCEEEEESSCC
T ss_pred HHHHHHHHHHHCCCcEEEEeCCCC
No 225
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=21.48 E-value=1e+02 Score=27.50 Aligned_cols=18 Identities=17% Similarity=-0.219 Sum_probs=13.8
Q ss_pred cccchHHHHHHHHhCCCe
Q 017312 266 NKIGTYSLALCAKFHNIL 283 (373)
Q Consensus 266 nkiGT~~lA~~Ak~~~vP 283 (373)
|--||..++-+++..+++
T Consensus 82 ~v~~t~~l~~~~~~~~~~ 99 (298)
T 4b4o_A 82 RLETTQLLAKAITKAPQP 99 (298)
T ss_dssp HHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 556888888888877655
No 226
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=21.22 E-value=1.2e+02 Score=28.37 Aligned_cols=54 Identities=11% Similarity=0.011 Sum_probs=30.3
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcc
Q 017312 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD 236 (373)
Q Consensus 170 ~~ILT~~~sgslat~g~~tal~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~D 236 (373)
.+||-.+..+. +.....+.+.+.+.++|....|+.. ++ ...+...|+++..+..
T Consensus 21 MrIl~~~~~~~---Ghv~~~~~La~~L~~~GheV~v~~~---~~-------~~~~~~~G~~~~~~~~ 74 (398)
T 3oti_A 21 MRVLFVSSPGI---GHLFPLIQLAWGFRTAGHDVLIAVA---EH-------ADRAAAAGLEVVDVAP 74 (398)
T ss_dssp CEEEEECCSSH---HHHGGGHHHHHHHHHTTCEEEEEES---SC-------HHHHHTTTCEEEESST
T ss_pred CEEEEEcCCCc---chHhHHHHHHHHHHHCCCEEEEecc---ch-------HHHHHhCCCeeEecCC
Confidence 56776654311 1112235566777778887777654 21 1235567887776663
No 227
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=21.15 E-value=1.4e+02 Score=26.06 Aligned_cols=81 Identities=7% Similarity=0.003 Sum_probs=51.7
Q ss_pred eeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEcchHHH-HHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhC
Q 017312 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFH 280 (373)
Q Consensus 202 ~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa~~-~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~ 280 (373)
..+|.++|..|... ......|.+.|..|....+..-+ ..+++...|.||+..+ +++ .-|--.+..+-+..
T Consensus 37 ~~~ILivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvllD~~--lp~-----~~G~~l~~~lr~~~ 107 (249)
T 3q9s_A 37 EQRILVIEDDHDIA--NVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLG--LPD-----FDGGDVVQRLRKNS 107 (249)
T ss_dssp CCEEEEECSCHHHH--HHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEEECC--SCH-----HHHHHHHHHHHTTC
T ss_pred CCEEEEEECCHHHH--HHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCC--CCC-----CCHHHHHHHHHcCC
Confidence 46888898887653 22345688889877776665433 3345678999988653 232 22444444444556
Q ss_pred CCeEEEeccCc
Q 017312 281 NILFYVAAPLT 291 (373)
Q Consensus 281 ~vPvyV~a~~~ 291 (373)
++|+++++...
T Consensus 108 ~~~iI~lt~~~ 118 (249)
T 3q9s_A 108 ALPIIVLTARD 118 (249)
T ss_dssp CCCEEEEESCC
T ss_pred CCCEEEEECCC
Confidence 79999987654
No 228
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=21.08 E-value=1.9e+02 Score=24.00 Aligned_cols=85 Identities=6% Similarity=-0.059 Sum_probs=48.9
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEE--cchHHHHHHHcCCCCEEEEcceeEecCCCeeccc
Q 017312 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--ADSAAAALMKDGRVSAVIVGADRVAANGDTANKI 268 (373)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI--~Dsa~~~~m~~~~vd~VivGAd~I~~nG~v~nki 268 (373)
.+.+.+.++| .+|+++.-+|. ++ .+|. .++.+... .|... ..+ .++|.||--|-.- ....-.|-.
T Consensus 15 ~l~~~L~~~g--~~V~~~~R~~~----~~--~~~~-~~~~~~~~D~~d~~~-~~~--~~~d~vi~~ag~~-~~~~~~~~~ 81 (221)
T 3ew7_A 15 RILEEAKNRG--HEVTAIVRNAG----KI--TQTH-KDINILQKDIFDLTL-SDL--SDQNVVVDAYGIS-PDEAEKHVT 81 (221)
T ss_dssp HHHHHHHHTT--CEEEEEESCSH----HH--HHHC-SSSEEEECCGGGCCH-HHH--TTCSEEEECCCSS-TTTTTSHHH
T ss_pred HHHHHHHhCC--CEEEEEEcCch----hh--hhcc-CCCeEEeccccChhh-hhh--cCCCEEEECCcCC-ccccchHHH
Confidence 3556666667 46666654432 22 2333 45543321 22222 556 7899988766442 222345778
Q ss_pred chHHHHHHHHhCCCeEEEec
Q 017312 269 GTYSLALCAKFHNILFYVAA 288 (373)
Q Consensus 269 GT~~lA~~Ak~~~vPvyV~a 288 (373)
||..+.-+|+..+++-+|..
T Consensus 82 ~~~~l~~a~~~~~~~~~v~~ 101 (221)
T 3ew7_A 82 SLDHLISVLNGTVSPRLLVV 101 (221)
T ss_dssp HHHHHHHHHCSCCSSEEEEE
T ss_pred HHHHHHHHHHhcCCceEEEE
Confidence 99999999999866544443
No 229
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=20.85 E-value=1.8e+02 Score=26.03 Aligned_cols=32 Identities=19% Similarity=0.108 Sum_probs=22.9
Q ss_pred CCCEEEEcceeEecCCCeecc-c-c--hHHHHHHHH
Q 017312 247 RVSAVIVGADRVAANGDTANK-I-G--TYSLALCAK 278 (373)
Q Consensus 247 ~vd~VivGAd~I~~nG~v~nk-i-G--T~~lA~~Ak 278 (373)
++|..|+-|...-.+|.+.=. . + ...+|.+||
T Consensus 151 ~~DVAlI~a~~aD~~Gn~~~~~~~~~~~~~~a~aAk 186 (241)
T 3cdk_A 151 TGDVAIVKAWKADTMGNLIFRKTARNFNPIAAMAGK 186 (241)
T ss_dssp CEEEEEEEEEEEETTCCEECCGGGCTTHHHHHHHEE
T ss_pred CCcEEEEEeccCCCCCeEEEecCchhhHHHHHHhCC
Confidence 689999999999999986533 2 2 244555666
No 230
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=20.81 E-value=3.7e+02 Score=27.19 Aligned_cols=87 Identities=8% Similarity=0.057 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHhCCCCccc-HHHHHHHHHHHHHHHhhc-------------------cCCHHHHHHHHHHHHHHHHH
Q 017312 85 DAASFLGNKLEYLVSSRPTAVN-LSDAAAKLKEIISKAAAT-------------------ASEANSVFQAYIEAAEIMLK 144 (373)
Q Consensus 85 el~~~l~~~~~~L~~~RPtav~-l~nai~~~~~~i~~~~~~-------------------~~~~~e~~~~l~~~~~~~~~ 144 (373)
++.+.|..+.+...+-+|.++. ++|+++.+.+.+++.... ..+++|..+...+.-+.|.+
T Consensus 213 ~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~~DlvtDQTSaHdp~~GY~P~g~t~ee~~~l~~~dp~~~~~ 292 (551)
T 1x87_A 213 SLDAALEMAKQAKEEKKALSIGLVGNAAEVLPRLVETGFVPDVLTDQTSAHDPLNGYIPAGLTLDEAAELRARDPKQYIA 292 (551)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHHHTTCCCSEECCCSCTTCTTTTCCCTTCCHHHHHHHHHHCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHCCCCCCCCCCCccccCcccccCCCCCCHHHHHHHHHhCHHHHHH
Confidence 3445566666667889999985 899999888888765311 12456665555554444443
Q ss_pred HHHHHHHHHHHHHHH--HhHhhhcCCCcEEEEecCC
Q 017312 145 DDVATNKAIGSYGAS--FLQNQLKNSKFSVLTHCNT 178 (373)
Q Consensus 145 e~~~a~~~I~~~g~~--~i~~~~~~~~~~ILT~~~s 178 (373)
... +.+..|... .+.+ .|..+.-|+|+
T Consensus 293 ~~~---~Sm~rhv~am~~~~~----~G~~~fDYGN~ 321 (551)
T 1x87_A 293 RAK---QSIAAHVRAMLAMQK----QGAVTFDYGNN 321 (551)
T ss_dssp HHH---HHHHHHHHHHHHHHH----TTCEECBCSSC
T ss_pred HHH---HHHHHHHHHHHHHHH----CCCeeeeccHH
Confidence 332 233333221 2221 67777777775
No 231
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=20.80 E-value=3.2e+02 Score=24.63 Aligned_cols=87 Identities=13% Similarity=0.080 Sum_probs=44.2
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEEc----------c-hHHHHHHHcCCCCEEEEcceeEec
Q 017312 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA----------D-SAAAALMKDGRVSAVIVGADRVAA 260 (373)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~----------D-sa~~~~m~~~~vd~VivGAd~I~~ 260 (373)
+++.+.+.| -+|++.+ |.+.+... .+...|.++..++ | ..+-..+ ++++..|++ ..---+
T Consensus 98 ~~~~l~~~g--d~vl~~~--~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i-~~p~np 168 (383)
T 3kax_A 98 SIQAFTKEN--ESVLVQP--PIYPPFFE---MVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQF-QQGVKLMLL-CSPHNP 168 (383)
T ss_dssp HHHHHCCTT--CEEEECS--SCCHHHHH---HHHHTTCEEEECCCEEETTEEECCHHHHHHHH-TTTCCEEEE-ESSBTT
T ss_pred HHHHhCCCC--CEEEEcC--CCcHHHHH---HHHHcCCEEEeccceecCCcEEEcHHHHHHHh-CcCCeEEEE-eCCCCC
Confidence 444443334 3455443 66665432 3445676665543 2 2233334 467777765 222222
Q ss_pred CCCeecccchHHHHHHHHhCCCeEEEe
Q 017312 261 NGDTANKIGTYSLALCAKFHNILFYVA 287 (373)
Q Consensus 261 nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (373)
.|.+...---..++-+|++||+++++=
T Consensus 169 tG~~~~~~~l~~l~~~~~~~~~~li~D 195 (383)
T 3kax_A 169 IGRVWKKEELTKLGSLCTKYNVIVVAD 195 (383)
T ss_dssp TTBCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCcCcCHHHHHHHHHHHHHCCCEEEEE
Confidence 333333222334555699999998873
No 232
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A
Probab=20.67 E-value=1.7e+02 Score=24.33 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=46.7
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHH-HCCC--eeEEEEecCCCCCcch---HHHHHHHhhCCCCeEEEcchHHHHHH
Q 017312 170 FSVLTHCNTGSLATAGYGTALGVIRALH-SEGV--LERAYCSETRPFNQGS---RLTAFELVHDRIPATLIADSAAAALM 243 (373)
Q Consensus 170 ~~ILT~~~sgslat~g~~tal~~l~~a~-~~g~--~~~V~v~EsrP~~qG~---rlta~~L~~~GI~vtlI~Dsa~~~~m 243 (373)
.+||..|- |-. +.+-.++++++... +.|. .+.|.-.-+.|+..|. ..+...|.+.||+....+-.--...+
T Consensus 5 ~~VLFVC~-gN~--cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~p~a~~~l~~~Gid~s~~ar~l~~~~~ 81 (163)
T 1u2p_A 5 LHVTFVCT-GNI--CRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHGYPTDHRAAQVGTEHL 81 (163)
T ss_dssp EEEEEEES-SSS--SHHHHHHHHHHHHHHHTTCTTTEEEEEEESSCTTTTCCCCHHHHHHHHHTTCCCCCCCCBCCHHHH
T ss_pred CEEEEEcC-CcH--hHHHHHHHHHHHHHHHCCCCCcEEEEecccCCCcCCCCCCHHHHHHHHHcCcCCCceeeECChhhc
Confidence 56887763 222 23356888887754 3443 5899988888865442 23556789999997611111112334
Q ss_pred HcCCCCEEEEc
Q 017312 244 KDGRVSAVIVG 254 (373)
Q Consensus 244 ~~~~vd~VivG 254 (373)
.. |.||.=
T Consensus 82 --~~-DlIi~M 89 (163)
T 1u2p_A 82 --AA-DLLVAL 89 (163)
T ss_dssp --TS-SEEEES
T ss_pred --cC-CEEEEe
Confidence 56 777654
No 233
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=20.60 E-value=47 Score=29.53 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=32.1
Q ss_pred HHHHHHcCCCCEEEEcceeEecCC--------CeecccchHHHHHHHHhCCCeEEEeccC
Q 017312 239 AAALMKDGRVSAVIVGADRVAANG--------DTANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 239 ~~~~m~~~~vd~VivGAd~I~~nG--------~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
+..+++..++|.||--|-....+. --.|-.||..+.-+|+.+++.|+.+...
T Consensus 48 ~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~ 107 (287)
T 3sc6_A 48 VQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTD 107 (287)
T ss_dssp HHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEG
T ss_pred HHHHHHhcCCCEEEECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchh
Confidence 334453236787776553322111 1257789999999999999986665443
No 234
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=20.53 E-value=1.2e+02 Score=28.02 Aligned_cols=71 Identities=11% Similarity=0.200 Sum_probs=42.2
Q ss_pred ccccHHHHHHHHHHCCC-eeEEE-EecCCCCCcchHHHHHHHhhCCCCeEEEc---------chHHHHHHHcCCCCEEEE
Q 017312 185 GYGTALGVIRALHSEGV-LERAY-CSETRPFNQGSRLTAFELVHDRIPATLIA---------DSAAAALMKDGRVSAVIV 253 (373)
Q Consensus 185 g~~tal~~l~~a~~~g~-~~~V~-v~EsrP~~qG~rlta~~L~~~GI~vtlI~---------Dsa~~~~m~~~~vd~Viv 253 (373)
|.|+.+.-|..+++.|. ...|. |.=.+|.. ...+ ..+.|||+..++ |..+...+++.++|.+++
T Consensus 97 g~g~nl~~ll~~~~~g~l~~~i~~Visn~~~a-~~~~----A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivl 171 (287)
T 3nrb_A 97 KFDHCLGDLLYRHRLGELDMEVVGIISNHPRE-ALSV----SLVGDIPFHYLPVTPATKAAQESQIKNIVTQSQADLIVL 171 (287)
T ss_dssp SCCHHHHHHHHHHHHTSSCCEEEEEEESSCGG-GCCC----CCCTTSCEEECCCCGGGHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCcCHHHHHHHHHCCCCCeEEEEEEeCChHH-HHHH----HHHcCCCEEEEeccCcchhhHHHHHHHHHHHhCCCEEEh
Confidence 55777766666666564 23433 33334441 1111 246799999986 344566777789999988
Q ss_pred cce-eEec
Q 017312 254 GAD-RVAA 260 (373)
Q Consensus 254 GAd-~I~~ 260 (373)
..= +|++
T Consensus 172 agym~il~ 179 (287)
T 3nrb_A 172 ARYMQILS 179 (287)
T ss_dssp SSCCSCCC
T ss_pred hhhhhhcC
Confidence 654 4543
No 235
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0
Probab=20.43 E-value=1e+02 Score=27.71 Aligned_cols=53 Identities=13% Similarity=0.018 Sum_probs=33.8
Q ss_pred chHHHHHHHcCCCCEEEEcceeEecCCC--------eecccchHHHHHHHHhCCCeEEEeccC
Q 017312 236 DSAAAALMKDGRVSAVIVGADRVAANGD--------TANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 236 Dsa~~~~m~~~~vd~VivGAd~I~~nG~--------v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
|..+..++ .++|.|+--|-....+.+ -.|-.||..+.-+|+.++++-+|...+
T Consensus 54 ~~~~~~~~--~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 114 (313)
T 3ehe_A 54 ADDIKDYL--KGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTST 114 (313)
T ss_dssp TSCCHHHH--TTCSEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred hHHHHHHh--cCCCEEEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCc
Confidence 34456667 688988866542211111 137789999999999999865555444
No 236
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=20.23 E-value=87 Score=24.33 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=27.2
Q ss_pred HHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEE
Q 017312 243 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYV 286 (373)
Q Consensus 243 m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV 286 (373)
++++++..||+..|+= +| ....+-..|..++||++.
T Consensus 34 i~~gkaklVilA~D~~-~~-------~~~~i~~~c~~~~ip~~~ 69 (105)
T 3u5e_c 34 LRQGKSKLIIIAANTP-VL-------RKSELEYYAMLSKTKVYY 69 (105)
T ss_dssp HHTTCCSEEEECTTSC-HH-------HHHHHHHHHHHHTCEEEE
T ss_pred HHcCCceEEEEeCCCC-HH-------HHHHHHHHHHHcCCCEEE
Confidence 4568999999988771 22 346667788999999985
No 237
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=20.19 E-value=1.3e+02 Score=26.55 Aligned_cols=64 Identities=6% Similarity=0.015 Sum_probs=39.0
Q ss_pred HhhCCCCeEEE--cc-hHHHHHHHcCCCCEEEEcceeEecCCCeecccchHHHHHHHHhCCCeEEEeccCc
Q 017312 224 LVHDRIPATLI--AD-SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (373)
Q Consensus 224 L~~~GI~vtlI--~D-sa~~~~m~~~~vd~VivGAd~I~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (373)
|...|+.+... .| ..+...+ .++|.||.-|-.. +..-.|-.|+..+.-+|+..|++-+|...++
T Consensus 41 ~~~~~v~~~~~D~~d~~~l~~~~--~~~d~vi~~a~~~--~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~ 107 (289)
T 3e48_A 41 DWRGKVSVRQLDYFNQESMVEAF--KGMDTVVFIPSII--HPSFKRIPEVENLVYAAKQSGVAHIIFIGYY 107 (289)
T ss_dssp GGBTTBEEEECCTTCHHHHHHHT--TTCSEEEECCCCC--CSHHHHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred hhhCCCEEEEcCCCCHHHHHHHH--hCCCEEEEeCCCC--ccchhhHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 44455544322 22 3455667 7788887655322 1122356788899999999998877665554
No 238
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=20.13 E-value=1.6e+02 Score=24.17 Aligned_cols=91 Identities=13% Similarity=-0.009 Sum_probs=49.5
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHHHHHHHhhCCCCeEEE--cc-hHHHHHHHcCCCCEEEEcceeEec-CCCeec
Q 017312 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--AD-SAAAALMKDGRVSAVIVGADRVAA-NGDTAN 266 (373)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI--~D-sa~~~~m~~~~vd~VivGAd~I~~-nG~v~n 266 (373)
.+.+.+.++| .+|+++.-+|.. + .++...++.+... .| ..+..++ .++|.||--|-.... +-.-.|
T Consensus 18 ~l~~~l~~~g--~~V~~~~r~~~~----~--~~~~~~~~~~~~~D~~~~~~~~~~~--~~~d~vi~~a~~~~~~~~~~~n 87 (206)
T 1hdo_A 18 TTLAQAVQAG--YEVTVLVRDSSR----L--PSEGPRPAHVVVGDVLQAADVDKTV--AGQDAVIVLLGTRNDLSPTTVM 87 (206)
T ss_dssp HHHHHHHHTT--CEEEEEESCGGG----S--CSSSCCCSEEEESCTTSHHHHHHHH--TTCSEEEECCCCTTCCSCCCHH
T ss_pred HHHHHHHHCC--CeEEEEEeChhh----c--ccccCCceEEEEecCCCHHHHHHHH--cCCCEEEECccCCCCCCccchH
Confidence 3556666667 466666543321 1 0111233332211 22 3455667 778888766532111 112357
Q ss_pred ccchHHHHHHHHhCCCeEEEeccCc
Q 017312 267 KIGTYSLALCAKFHNILFYVAAPLT 291 (373)
Q Consensus 267 kiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (373)
-.|+..+.-+|+.++++-+|...+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~v~~Ss~ 112 (206)
T 1hdo_A 88 SEGARNIVAAMKAHGVDKVVACTSA 112 (206)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeee
Confidence 7889999999999998766654444
No 239
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=20.12 E-value=1.1e+02 Score=27.29 Aligned_cols=52 Identities=12% Similarity=0.019 Sum_probs=29.3
Q ss_pred HHHHHHcCCCCEEEEcceeEecC--------CCeecccchHHHHHHHHhCCCeEEEeccC
Q 017312 239 AAALMKDGRVSAVIVGADRVAAN--------GDTANKIGTYSLALCAKFHNILFYVAAPL 290 (373)
Q Consensus 239 ~~~~m~~~~vd~VivGAd~I~~n--------G~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (373)
+..+++..++|.||--|-....+ ---+|-.||..+.-+|+.+++.|+.+...
T Consensus 52 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~ 111 (315)
T 2ydy_A 52 VHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIYISSD 111 (315)
T ss_dssp CHHHHHHHCCSEEEECC-------------------CHHHHHHHHHHHHHTCEEEEEEEG
T ss_pred HHHHHHhhCCCEEEECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchH
Confidence 33444322588888766432111 01248899999999999988877665543
No 240
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=20.11 E-value=1.2e+02 Score=26.15 Aligned_cols=66 Identities=14% Similarity=0.071 Sum_probs=38.4
Q ss_pred HHHHHHHH-HHCCC---eeEEEEecCCCCCcchHHHHHHHhh-C-CCCeEEEcchHH--HHHHHcCCCCEEEEc
Q 017312 189 ALGVIRAL-HSEGV---LERAYCSETRPFNQGSRLTAFELVH-D-RIPATLIADSAA--AALMKDGRVSAVIVG 254 (373)
Q Consensus 189 al~~l~~a-~~~g~---~~~V~v~EsrP~~qG~rlta~~L~~-~-GI~vtlI~Dsa~--~~~m~~~~vd~VivG 254 (373)
+..+|..| ++.|. .+++.+..+....+-+...+..|.+ . ||+|++..-... ...++.++.|.++.|
T Consensus 83 Ak~LL~eaG~~~g~~~l~l~l~~~~~~~~~~~a~~i~~~l~~~i~GI~v~i~~~~~~~~~~~~~~g~~d~~~~~ 156 (229)
T 3o6p_A 83 AKEYWEKAKKELGISTLTMDILSSDADSSKKTVEFVQGSIQDALDGVKVTVSPVPFSVRLDRSNKGDFDAVIGG 156 (229)
T ss_dssp HHHHHHHHHHHHTCSCEEEEEEEECSHHHHHHHHHHHHHHHHHSTTEEEEEEEECHHHHHHHHHHTCCSEEEEE
T ss_pred HHHHHHHcCcccCCCceEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEecCHHHHHHHhhcCCceEEEec
Confidence 45566665 33453 5666554332222223455667888 8 999988653322 233556889988865
No 241
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=20.10 E-value=1.9e+02 Score=28.37 Aligned_cols=114 Identities=12% Similarity=0.029 Sum_probs=57.7
Q ss_pred HHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC---CCeeEEEEecC-CC----------------CCc
Q 017312 156 YGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE---GVLERAYCSET-RP----------------FNQ 215 (373)
Q Consensus 156 ~g~~~i~~~~~~~~~~ILT~~~sgslat~g~~tal~~l~~a~~~---g~~~~V~v~Es-rP----------------~~q 215 (373)
.++++|+ +|++|..++.+ ++-..+++...+. =++++++..=+ .| +++
T Consensus 20 EAv~~Ik-----dGd~V~~~g~~--------g~P~~L~~ALa~r~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
T 3eh7_A 20 EAVKHIK-----NGERVALSHAA--------GVPQSCVDALVQQADLFQNVEIYHMLCLGEGKYMAPEMAPHFRHITNFV 86 (434)
T ss_dssp HHHTTCC-----TTCEEEECCGG--------GCCHHHHHHHHHSTTTC--CEEECCBCTTCC------------------
T ss_pred HHHHhCC-----CcCEEEECCcc--------CCHHHHHHHHHHhHhhcCCeEEEEeccCCchhhcChhhhCeEEEecCcC
Confidence 3456688 89999998643 3333444444332 23566653311 11 122
Q ss_pred chHHHHHHHhhCC-CCeEEEcchHHHHHHHcC--CCCEEEEcceeEecCCCeecccch-HHHHHHHHhCCCeEEE
Q 017312 216 GSRLTAFELVHDR-IPATLIADSAAAALMKDG--RVSAVIVGADRVAANGDTANKIGT-YSLALCAKFHNILFYV 286 (373)
Q Consensus 216 G~rlta~~L~~~G-I~vtlI~Dsa~~~~m~~~--~vd~VivGAd~I~~nG~v~nkiGT-~~lA~~Ak~~~vPvyV 286 (373)
|..+ +++...| +...-+.-+....+++.+ ++|.+++.|...-.+|.+.- |+ ...+..+.....-|++
T Consensus 87 ~~~~--r~~i~~G~~~~~p~~ls~~~~~~~~g~~~~DVAli~as~~D~~Gn~s~--g~s~~~~~~~~~~A~~VI~ 157 (434)
T 3eh7_A 87 GGNS--RKAVEENRADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDENGYCSF--GVSCDYSKPAAESAHLVIG 157 (434)
T ss_dssp -------------CTTCCCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTSEEEC--TTBCTTHHHHHHHCSEEEE
T ss_pred CHHH--HHHHHCCCccccChhHHHHHHHHHhCCCCCcEEEEEEecCCCCCCEEe--cCccchHHHHHHhCCeEEE
Confidence 2221 2344444 333334566677777653 78999999999988998752 33 2334444444554444
No 242
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=20.01 E-value=4.5e+02 Score=24.88 Aligned_cols=85 Identities=11% Similarity=0.066 Sum_probs=45.7
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHHHH-HHHhhCCCCeEEEcch---HHHHHHHcCCCCEEEEcceeEe-cCCCeec
Q 017312 192 VIRALHSEGVLERAYCSETRPFNQGSRLTA-FELVHDRIPATLIADS---AAAALMKDGRVSAVIVGADRVA-ANGDTAN 266 (373)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~qG~rlta-~~L~~~GI~vtlI~Ds---a~~~~m~~~~vd~VivGAd~I~-~nG~v~n 266 (373)
+++.+.+.| -+|++. .|.+.|..... ..+...|+.++.++-. ++...+ +++...|++ ..+. +.|.+..
T Consensus 112 al~~l~~~G--d~Vi~~--~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ai-~~~t~~v~l--e~p~NptG~~~~ 184 (414)
T 3ndn_A 112 SLGALLGAG--DRLVAA--RSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERAL-SVPTQAVFF--ETPSNPMQSLVD 184 (414)
T ss_dssp HHHTTCCTT--CEEEEE--SCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHT-SSCCSEEEE--ESSCTTTCCCCC
T ss_pred HHHHHhCCC--CEEEEc--CCccchHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhc-CCCCeEEEE--ECCCCCCCcccc
Confidence 344443334 345554 35565533212 1245689999988632 233334 245666655 2222 2243322
Q ss_pred ccchHHHHHHHHhCCCeEEE
Q 017312 267 KIGTYSLALCAKFHNILFYV 286 (373)
Q Consensus 267 kiGT~~lA~~Ak~~~vPvyV 286 (373)
--.++-+|++||+++++
T Consensus 185 ---l~~i~~la~~~g~~liv 201 (414)
T 3ndn_A 185 ---IAAVTELAHAAGAKVVL 201 (414)
T ss_dssp ---HHHHHHHHHHTTCEEEE
T ss_pred ---HHHHHHHHHHcCCEEEE
Confidence 34678889999999887
Done!