BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017314
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 140
K + H +S+ F N L S DK IK+W G T+ G + D+A +
Sbjct: 38 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 97
Query: 141 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
D+ +++AS L +WDV+SG+ TL GH++ V + + S +VS ++D ++++W
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 156
Query: 201 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 259
D+ G C+ T+ HS+ +A+ F+ DG I S DG R+WD +G+ L +
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 260 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 316
V+ + S +G IL + DN L+D + + N + CI + S
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 270
Query: 317 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 350
++ +GS D VYIW++ +IV+ L+ HT V+S
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 306
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 128/254 (50%), Gaps = 13/254 (5%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 143
I+ H+ G + + + +S L+S DK++K+WD ++G TL G V +
Sbjct: 83 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 142
Query: 144 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 203
+++ S ++ +WDV +G+ TL H+D V AV ++ S +VS++YD ++WD
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL-IVSSSYDGLCRIWDTA 201
Query: 204 KGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH---SLA 258
G C+ T+I N + + FS +G+ I + +D L+LWD GK L H
Sbjct: 202 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 261
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 318
+ S++ G I++ DNL ++++++ E+ L+ + V S + P E+ +
Sbjct: 262 IFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS----TACHPTENII 316
Query: 319 AAGSA--DGSVYIW 330
A+ + D ++ +W
Sbjct: 317 ASAALENDKTIKLW 330
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 121 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 180
+L TL G +V + + + + ++S+ + +W G+ T++GH K+ DV
Sbjct: 36 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 93
Query: 181 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 235
+ S S +VSA+ D+TLK+WD+ G C+ T+ HSN CN F+ I SG D
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 150
Query: 236 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 295
++R+WD++TGK L + AHS V+++ +R G++I++S D L ++D S + +L
Sbjct: 151 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Query: 296 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 355
N S SP+ Y+ A + D ++ +W SK ++T H C ++
Sbjct: 210 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 265
Query: 356 L----GKPLASADKNGVVCVW 372
GK + S ++ +V +W
Sbjct: 266 FSVTGGKWIVSGSEDNLVYIW 286
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 5/204 (2%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 139
C + H F S ++SG D+S+++WD TG TL V +
Sbjct: 121 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 180
Query: 140 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 199
D ++++S +WD SG+ TL + + + +++++A D TLK+
Sbjct: 181 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 240
Query: 200 WDLHKGYCVNTIIFHSN---CNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 255
WD KG C+ T H N C FS+ G+ I SG D + +W++QT +++ ++ H
Sbjct: 241 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 300
Query: 256 SLAAVTSISLSRSGNIILTSGRDN 279
+ V S + + NII ++ +N
Sbjct: 301 T-DVVISTACHPTENIIASAALEN 323
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 140
K + H +S+ F N L S DK IK+W G T+ G + D+A +
Sbjct: 40 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 99
Query: 141 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
D+ +++AS L +WDV+SG+ TL GH++ V + + S +VS ++D ++++W
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 158
Query: 201 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 259
D+ G C+ T+ HS+ +A+ F+ DG I S DG R+WD +G+ L +
Sbjct: 159 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 218
Query: 260 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 316
V+ + S +G IL + DN L+D + + N + CI + S
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 272
Query: 317 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 350
++ +GS D VYIW++ +IV+ L+ HT V+S
Sbjct: 273 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 308
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 128/254 (50%), Gaps = 13/254 (5%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 143
I+ H+ G + + + +S L+S DK++K+WD ++G TL G V +
Sbjct: 85 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 144
Query: 144 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 203
+++ S ++ +WDV +G+ TL H+D V AV ++ S +VS++YD ++WD
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL-IVSSSYDGLCRIWDTA 203
Query: 204 KGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH---SLA 258
G C+ T+I N + + FS +G+ I + +D L+LWD GK L H
Sbjct: 204 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 263
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 318
+ S++ G I++ DNL ++++++ E+ L+ + V S + P E+ +
Sbjct: 264 IFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS----TACHPTENII 318
Query: 319 AAGSA--DGSVYIW 330
A+ + D ++ +W
Sbjct: 319 ASAALENDKTIKLW 332
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 121 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 180
+L TL G +V + + + + ++S+ + +W G+ T++GH K+ DV
Sbjct: 38 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 95
Query: 181 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 235
+ S S +VSA+ D+TLK+WD+ G C+ T+ HSN CN F+ I SG D
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 152
Query: 236 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 295
++R+WD++TGK L + AHS V+++ +R G++I++S D L ++D S + +L
Sbjct: 153 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 211
Query: 296 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 355
N S SP+ Y+ A + D ++ +W SK ++T H C ++
Sbjct: 212 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 267
Query: 356 L----GKPLASADKNGVVCVW 372
GK + S ++ +V +W
Sbjct: 268 FSVTGGKWIVSGSEDNLVYIW 288
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 5/204 (2%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 139
C + H F S ++SG D+S+++WD TG TL V +
Sbjct: 123 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 182
Query: 140 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 199
D ++++S +WD SG+ TL + + + +++++A D TLK+
Sbjct: 183 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 242
Query: 200 WDLHKGYCVNTIIFHSN---CNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 255
WD KG C+ T H N C FS+ G+ I SG D + +W++QT +++ ++ H
Sbjct: 243 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 302
Query: 256 SLAAVTSISLSRSGNIILTSGRDN 279
+ V S + + NII ++ +N
Sbjct: 303 T-DVVISTACHPTENIIASAALEN 325
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 140
K + H +S+ F N L S DK IK+W G T+ G + D+A +
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 75
Query: 141 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
D+ +++AS L +WDV+SG+ TL GH++ V + + S +VS ++D ++++W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 134
Query: 201 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 259
D+ G C+ T+ HS+ +A+ F+ DG I S DG R+WD +G+ L +
Sbjct: 135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Query: 260 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 316
V+ + S +G IL + DN L+D + + N + CI + S
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 248
Query: 317 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 350
++ +GS D VYIW++ +IV+ L+ HT V+S
Sbjct: 249 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 284
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 128/254 (50%), Gaps = 13/254 (5%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 143
I+ H+ G + + + +S L+S DK++K+WD ++G TL G V +
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 144 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 203
+++ S ++ +WDV +G+ TL H+D V AV ++ S +VS++YD ++WD
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL-IVSSSYDGLCRIWDTA 179
Query: 204 KGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH---SLA 258
G C+ T+I N + + FS +G+ I + +D L+LWD GK L H
Sbjct: 180 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 239
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 318
+ S++ G I++ DNL ++++++ E+ L+ + V S + P E+ +
Sbjct: 240 IFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS----TACHPTENII 294
Query: 319 AAGSA--DGSVYIW 330
A+ + D ++ +W
Sbjct: 295 ASAALENDKTIKLW 308
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 121 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 180
+L TL G +V + + + + ++S+ + +W G+ T++GH K+ DV
Sbjct: 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 71
Query: 181 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 235
+ S S +VSA+ D+TLK+WD+ G C+ T+ HSN CN F+ I SG D
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 128
Query: 236 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 295
++R+WD++TGK L + AHS V+++ +R G++I++S D L ++D S + +L
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Query: 296 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 355
N S SP+ Y+ A + D ++ +W SK ++T H C ++
Sbjct: 188 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 243
Query: 356 L----GKPLASADKNGVVCVW 372
GK + S ++ +V +W
Sbjct: 244 FSVTGGKWIVSGSEDNLVYIW 264
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 5/204 (2%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 139
C + H F S ++SG D+S+++WD TG TL V +
Sbjct: 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 140 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 199
D ++++S +WD SG+ TL + + + +++++A D TLK+
Sbjct: 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 218
Query: 200 WDLHKGYCVNTIIFHSN---CNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 255
WD KG C+ T H N C FS+ G+ I SG D + +W++QT +++ ++ H
Sbjct: 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Query: 256 SLAAVTSISLSRSGNIILTSGRDN 279
+ V S + + NII ++ +N
Sbjct: 279 T-DVVISTACHPTENIIASAALEN 301
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 140
K + H +S+ F N L S DK IK+W G T+ G + D+A +
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 141 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
D+ +++AS L +WDV+SG+ TL GH++ V + + S +VS ++D ++++W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 140
Query: 201 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 259
D+ G C+ T+ HS+ +A+ F+ DG I S DG R+WD +G+ L +
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 260 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 316
V+ + S +G IL + DN L+D + + N + CI + S
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 254
Query: 317 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 350
++ +GS D VYIW++ +IV+ L+ HT V+S
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 290
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 128/254 (50%), Gaps = 13/254 (5%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 143
I+ H+ G + + + +S L+S DK++K+WD ++G TL G V +
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 144 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 203
+++ S ++ +WDV +G+ TL H+D V AV ++ S +VS++YD ++WD
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL-IVSSSYDGLCRIWDTA 185
Query: 204 KGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH---SLA 258
G C+ T+I N + + FS +G+ I + +D L+LWD GK L H
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 245
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 318
+ S++ G I++ DNL ++++++ E+ L+ + V S + P E+ +
Sbjct: 246 IFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS----TACHPTENII 300
Query: 319 AAGSA--DGSVYIW 330
A+ + D ++ +W
Sbjct: 301 ASAALENDKTIKLW 314
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 121 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 180
+L TL G +V + + + + ++S+ + +W G+ T++GH K+ DV
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 77
Query: 181 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 235
+ S S +VSA+ D+TLK+WD+ G C+ T+ HSN CN F+ I SG D
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 134
Query: 236 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 295
++R+WD++TGK L + AHS V+++ +R G++I++S D L ++D S + +L
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 296 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 355
N S SP+ Y+ A + D ++ +W SK ++T H C ++
Sbjct: 194 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 249
Query: 356 L----GKPLASADKNGVVCVW 372
GK + S ++ +V +W
Sbjct: 250 FSVTGGKWIVSGSEDNLVYIW 270
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 5/204 (2%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 139
C + H F S ++SG D+S+++WD TG TL V +
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 140 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 199
D ++++S +WD SG+ TL + + + +++++A D TLK+
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224
Query: 200 WDLHKGYCVNTIIFHSN---CNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 255
WD KG C+ T H N C FS+ G+ I SG D + +W++QT +++ ++ H
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Query: 256 SLAAVTSISLSRSGNIILTSGRDN 279
+ V S + + NII ++ +N
Sbjct: 285 T-DVVISTACHPTENIIASAALEN 307
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 140
K + H +S+ F N L S DK IK+W G T+ G + D+A +
Sbjct: 33 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 92
Query: 141 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
D+ +++AS L +WDV+SG+ TL GH++ V + + S +VS ++D ++++W
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 151
Query: 201 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 259
D+ G C+ T+ HS+ +A+ F+ DG I S DG R+WD +G+ L +
Sbjct: 152 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 211
Query: 260 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 316
V+ + S +G IL + DN L+D + + N + CI + S
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 265
Query: 317 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 350
++ +GS D VYIW++ +IV+ L+ HT V+S
Sbjct: 266 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 301
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 128/254 (50%), Gaps = 13/254 (5%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 143
I+ H+ G + + + +S L+S DK++K+WD ++G TL G V +
Sbjct: 78 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 137
Query: 144 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 203
+++ S ++ +WDV +G+ TL H+D V AV ++ S +VS++YD ++WD
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL-IVSSSYDGLCRIWDTA 196
Query: 204 KGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH---SLA 258
G C+ T+I N + + FS +G+ I + +D L+LWD GK L H
Sbjct: 197 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 256
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 318
+ S++ G I++ DNL ++++++ E+ L+ + V S + P E+ +
Sbjct: 257 IFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS----TACHPTENII 311
Query: 319 AAGSA--DGSVYIW 330
A+ + D ++ +W
Sbjct: 312 ASAALENDKTIKLW 325
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 121 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 180
+L TL G +V + + + + ++S+ + +W G+ T++GH K+ DV
Sbjct: 31 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 88
Query: 181 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 235
+ S S +VSA+ D+TLK+WD+ G C+ T+ HSN CN F+ I SG D
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 145
Query: 236 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 295
++R+WD++TGK L + AHS V+++ +R G++I++S D L ++D S + +L
Sbjct: 146 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 204
Query: 296 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 355
N S SP+ Y+ A + D ++ +W SK ++T H C ++
Sbjct: 205 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 260
Query: 356 L----GKPLASADKNGVVCVW 372
GK + S ++ +V +W
Sbjct: 261 FSVTGGKWIVSGSEDNLVYIW 281
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 5/204 (2%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 139
C + H F S ++SG D+S+++WD TG TL V +
Sbjct: 116 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 175
Query: 140 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 199
D ++++S +WD SG+ TL + + + +++++A D TLK+
Sbjct: 176 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 235
Query: 200 WDLHKGYCVNTIIFHSN---CNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 255
WD KG C+ T H N C FS+ G+ I SG D + +W++QT +++ ++ H
Sbjct: 236 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 295
Query: 256 SLAAVTSISLSRSGNIILTSGRDN 279
+ V S + + NII ++ +N
Sbjct: 296 T-DVVISTACHPTENIIASAALEN 318
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 140
K + H +S+ F N L S DK IK+W G T+ G + D+A +
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 75
Query: 141 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
D+ +++AS L +WDV+SG+ TL GH++ V + + S +VS ++D ++++W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 134
Query: 201 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 259
D+ G C+ T+ HS+ +A+ F+ DG I S DG R+WD +G+ L +
Sbjct: 135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Query: 260 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 316
V+ + S +G IL + DN L+D + + N + CI + S
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 248
Query: 317 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 350
++ +GS D VYIW++ +IV+ L+ HT V+S
Sbjct: 249 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 284
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 128/254 (50%), Gaps = 13/254 (5%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 143
I+ H+ G + + + +S L+S DK++K+WD ++G TL G V +
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 144 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 203
+++ S ++ +WDV +G+ TL H+D V AV ++ S +VS++YD ++WD
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL-IVSSSYDGLCRIWDTA 179
Query: 204 KGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH---SLA 258
G C+ T+I N + + FS +G+ I + +D L+LWD GK L H
Sbjct: 180 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 239
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 318
+ S++ G I++ DNL ++++++ E+ L+ + V S + P E+ +
Sbjct: 240 IFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS----TACHPTENII 294
Query: 319 AAGSA--DGSVYIW 330
A+ + D ++ +W
Sbjct: 295 ASAALENDKTIKLW 308
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 121 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 180
+L TL G +V + + + + ++S+ + +W G+ T++GH K+ DV
Sbjct: 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 71
Query: 181 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 235
+ S S +VSA+ D+TLK+WD+ G C+ T+ HSN CN F+ I SG D
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 128
Query: 236 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 295
++R+WD++TGK L + AHS V+++ +R G++I++S D L ++D S + +L
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Query: 296 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 355
N S SP+ Y+ A + D ++ +W SK ++T H C ++
Sbjct: 188 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 243
Query: 356 L----GKPLASADKNGVVCVW 372
GK + S ++ +V +W
Sbjct: 244 FSVTGGKWIVSGSEDNLVYIW 264
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 5/204 (2%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 139
C + H F S ++SG D+S+++WD TG TL V +
Sbjct: 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 140 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 199
D ++++S +WD SG+ TL + + + +++++A D TLK+
Sbjct: 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 218
Query: 200 WDLHKGYCVNTIIFHSN---CNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 255
WD KG C+ T H N C FS+ G+ I SG D + +W++QT +++ ++ H
Sbjct: 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Query: 256 SLAAVTSISLSRSGNIILTSGRDN 279
+ V S + + NII ++ +N
Sbjct: 279 T-DVVISTACHPTENIIASAALEN 301
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 142/290 (48%), Gaps = 16/290 (5%)
Query: 67 GAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL 126
G+EF + K + H +S+ F N L S DK IK+W G T+
Sbjct: 8 GSEFVKPNYA---LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 64
Query: 127 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR 186
G + D+A + D+ +++AS L +WDV+SG+ TL GH++ V + + S
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSN 123
Query: 187 HVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQT 245
+VS ++D ++++WD+ G C+ T+ HS+ +A+ F+ DG I S DG R+WD +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 246 GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASN 305
G+ L + V+ + S +G IL + DN L+D + + N
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE---- 239
Query: 306 WSRSCISPDES-----YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 350
+ CI + S ++ +GS D VYIW++ +IV+ L+ HT V+S
Sbjct: 240 --KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 287
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 124/246 (50%), Gaps = 11/246 (4%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 143
I+ H+ G + + + +S L+S DK++K+WD ++G TL G V +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 144 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 203
+++ S ++ +WDV +G+ TL H+D V AV ++ S +VS++YD ++WD
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL-IVSSSYDGLCRIWDTA 182
Query: 204 KGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH---SLA 258
G C+ T+I N + + FS +G+ I + +D L+LWD GK L H
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 242
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 318
+ S++ G I++ DNL ++++++ E+ L+ + V S + P E+ +
Sbjct: 243 IFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS----TACHPTENII 297
Query: 319 AAGSAD 324
A+ + +
Sbjct: 298 ASAALE 303
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 121 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 180
+L TL G +V + + + + ++S+ + +W G+ T++GH K+ DV
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 74
Query: 181 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 235
+ S S +VSA+ D+TLK+WD+ G C+ T+ HSN CN F+ I SG D
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 131
Query: 236 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 295
++R+WD++TGK L + AHS V+++ +R G++I++S D L ++D S + +L
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 296 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 355
N S SP+ Y+ A + D ++ +W SK ++T H C ++
Sbjct: 191 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 246
Query: 356 L----GKPLASADKNGVVCVW 372
GK + S ++ +V +W
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIW 267
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 5/204 (2%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 139
C + H F S ++SG D+S+++WD TG TL V +
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 140 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 199
D ++++S +WD SG+ TL + + + +++++A D TLK+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 200 WDLHKGYCVNTIIFHSN---CNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 255
WD KG C+ T H N C FS+ G+ I SG D + +W++QT +++ ++ H
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Query: 256 SLAAVTSISLSRSGNIILTSGRDN 279
+ V S + + NII ++ +N
Sbjct: 282 T-DVVISTACHPTENIIASAALEN 304
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 140
K + H +S+ F N L S DK IK+W G T+ G + D+A +
Sbjct: 21 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 80
Query: 141 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
D+ +++AS L +WDV+SG+ TL GH++ V + + S +VS ++D ++++W
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 139
Query: 201 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 259
D+ G C+ T+ HS+ +A+ F+ DG I S DG R+WD +G+ L +
Sbjct: 140 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 199
Query: 260 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 316
V+ + S +G IL + DN L+D + + N + CI + S
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 253
Query: 317 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 350
++ +GS D VYIW++ +IV+ L+ HT V+S
Sbjct: 254 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 289
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 128/254 (50%), Gaps = 13/254 (5%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 143
I+ H+ G + + + +S L+S DK++K+WD ++G TL G V +
Sbjct: 66 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 125
Query: 144 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 203
+++ S ++ +WDV +G+ TL H+D V AV ++ S +VS++YD ++WD
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL-IVSSSYDGLCRIWDTA 184
Query: 204 KGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH---SLA 258
G C+ T+I N + + FS +G+ I + +D L+LWD GK L H
Sbjct: 185 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 244
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 318
+ S++ G I++ DNL ++++++ E+ L+ + V S + P E+ +
Sbjct: 245 IFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS----TACHPTENII 299
Query: 319 AAGSA--DGSVYIW 330
A+ + D ++ +W
Sbjct: 300 ASAALENDKTIKLW 313
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 121 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 180
+L TL G +V + + + + ++S+ + +W G+ T++GH K+ DV
Sbjct: 19 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 76
Query: 181 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 235
+ S S +VSA+ D+TLK+WD+ G C+ T+ HSN CN F+ I SG D
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 133
Query: 236 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 295
++R+WD++TGK L + AHS V+++ +R G++I++S D L ++D S + +L
Sbjct: 134 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 192
Query: 296 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 355
N S SP+ Y+ A + D ++ +W SK ++T H C ++
Sbjct: 193 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 248
Query: 356 L----GKPLASADKNGVVCVW 372
GK + S ++ +V +W
Sbjct: 249 FSVTGGKWIVSGSEDNLVYIW 269
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 5/204 (2%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 139
C + H F S ++SG D+S+++WD TG TL V +
Sbjct: 104 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 163
Query: 140 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 199
D ++++S +WD SG+ TL + + + +++++A D TLK+
Sbjct: 164 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 223
Query: 200 WDLHKGYCVNTIIFHSN---CNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 255
WD KG C+ T H N C FS+ G+ I SG D + +W++QT +++ ++ H
Sbjct: 224 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 283
Query: 256 SLAAVTSISLSRSGNIILTSGRDN 279
+ V S + + NII ++ +N
Sbjct: 284 T-DVVISTACHPTENIIASAALEN 306
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 140
K + H +S+ F N L S DK IK+W G T+ G + D+A +
Sbjct: 17 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 76
Query: 141 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
D+ +++AS L +WDV+SG+ TL GH++ V + + S +VS ++D ++++W
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 135
Query: 201 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 259
D+ G C+ T+ HS+ +A+ F+ DG I S DG R+WD +G+ L +
Sbjct: 136 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 195
Query: 260 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 316
V+ + S +G IL + DN L+D + + N + CI + S
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 249
Query: 317 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 350
++ +GS D VYIW++ +IV+ L+ HT V+S
Sbjct: 250 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 285
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 128/254 (50%), Gaps = 13/254 (5%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 143
I+ H+ G + + + +S L+S DK++K+WD ++G TL G V +
Sbjct: 62 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 121
Query: 144 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 203
+++ S ++ +WDV +G+ TL H+D V AV ++ S +VS++YD ++WD
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL-IVSSSYDGLCRIWDTA 180
Query: 204 KGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH---SLA 258
G C+ T+I N + + FS +G+ I + +D L+LWD GK L H
Sbjct: 181 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 240
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 318
+ S++ G I++ DNL ++++++ E+ L+ + V S + P E+ +
Sbjct: 241 IFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS----TACHPTENII 295
Query: 319 AAGSA--DGSVYIW 330
A+ + D ++ +W
Sbjct: 296 ASAALENDKTIKLW 309
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 121 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 180
+L TL G +V + + + + ++S+ + +W G+ T++GH K+ DV
Sbjct: 15 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 72
Query: 181 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 235
+ S S +VSA+ D+TLK+WD+ G C+ T+ HSN CN F+ I SG D
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 129
Query: 236 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 295
++R+WD++TGK L + AHS V+++ +R G++I++S D L ++D S + +L
Sbjct: 130 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 188
Query: 296 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 355
N S SP+ Y+ A + D ++ +W SK ++T H C ++
Sbjct: 189 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 244
Query: 356 L----GKPLASADKNGVVCVW 372
GK + S ++ +V +W
Sbjct: 245 FSVTGGKWIVSGSEDNLVYIW 265
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 5/204 (2%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 139
C + H F S ++SG D+S+++WD TG TL V +
Sbjct: 100 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 159
Query: 140 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 199
D ++++S +WD SG+ TL + + + +++++A D TLK+
Sbjct: 160 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 219
Query: 200 WDLHKGYCVNTIIFHSN---CNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 255
WD KG C+ T H N C FS+ G+ I SG D + +W++QT +++ ++ H
Sbjct: 220 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 279
Query: 256 SLAAVTSISLSRSGNIILTSGRDN 279
+ V S + + NII ++ +N
Sbjct: 280 T-DVVISTACHPTENIIASAALEN 302
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 142/290 (48%), Gaps = 16/290 (5%)
Query: 67 GAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL 126
G+EF + K + H +S+ F N L S DK IK+W G T+
Sbjct: 8 GSEFVKPNYA---LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 64
Query: 127 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR 186
G + D+A + D+ +++AS L +WDV+SG+ TL GH++ V + + S
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSN 123
Query: 187 HVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQT 245
+VS ++D ++++WD+ G C+ T+ HS+ +A+ F+ DG I S DG R+WD +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 246 GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASN 305
G+ L + V+ + S +G IL + DN L+D + + N
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE---- 239
Query: 306 WSRSCISPDES-----YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 350
+ CI + S ++ +GS D VYIW++ +IV+ L+ HT V+S
Sbjct: 240 --KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 287
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 124/246 (50%), Gaps = 11/246 (4%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 143
I+ H+ G + + + +S L+S DK++K+WD ++G TL G V +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 144 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 203
+++ S ++ +WDV +G+ TL H+D V AV ++ S +VS++YD ++WD
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL-IVSSSYDGLCRIWDTA 182
Query: 204 KGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH---SLA 258
G C+ T+I N + + FS +G+ I + +D L+LWD GK L H
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 242
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 318
+ S++ G I++ DNL ++++++ E+ L+ + V S + P E+ +
Sbjct: 243 IFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS----TACHPTENII 297
Query: 319 AAGSAD 324
A+ + +
Sbjct: 298 ASAALE 303
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 121 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 180
+L TL G +V + + + + ++S+ + +W G+ T++GH K+ DV
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 74
Query: 181 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 235
+ S S +VSA+ D+TLK+WD+ G C+ T+ HSN CN F+ I SG D
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 131
Query: 236 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 295
++R+WD++TGK L + AHS V+++ +R G++I++S D L ++D S + +L
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 296 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 355
N S SP+ Y+ A + D ++ +W SK ++T H C ++
Sbjct: 191 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 246
Query: 356 L----GKPLASADKNGVVCVW 372
GK + S ++ +V +W
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIW 267
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 5/204 (2%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 139
C + H F S ++SG D+S+++WD TG TL V +
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 140 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 199
D ++++S +WD SG+ TL + + + +++++A D TLK+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 200 WDLHKGYCVNTIIFHSN---CNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 255
WD KG C+ T H N C FS+ G+ I SG D + +W++QT +++ ++ H
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Query: 256 SLAAVTSISLSRSGNIILTSGRDN 279
+ V S + + NII ++ +N
Sbjct: 282 T-DVVISTACHPTENIIASAALEN 304
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 140
K + H +S+ F N L S DK IK+W G T+ G + D+A +
Sbjct: 12 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 71
Query: 141 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
D+ +++AS L +WDV+SG+ TL GH++ V + + S +VS ++D ++++W
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 130
Query: 201 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 259
D+ G C+ T+ HS+ +A+ F+ DG I S DG R+WD +G+ L +
Sbjct: 131 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 190
Query: 260 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 316
V+ + S +G IL + DN L+D + + N + CI + S
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 244
Query: 317 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 350
++ +GS D VYIW++ +IV+ L+ HT V+S
Sbjct: 245 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 280
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 128/254 (50%), Gaps = 13/254 (5%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 143
I+ H+ G + + + +S L+S DK++K+WD ++G TL G V +
Sbjct: 57 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 116
Query: 144 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 203
+++ S ++ +WDV +G+ TL H+D V AV ++ S +VS++YD ++WD
Sbjct: 117 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL-IVSSSYDGLCRIWDTA 175
Query: 204 KGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH---SLA 258
G C+ T+I N + + FS +G+ I + +D L+LWD GK L H
Sbjct: 176 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 235
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 318
+ S++ G I++ DNL ++++++ E+ L+ + V S + P E+ +
Sbjct: 236 IFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS----TACHPTENII 290
Query: 319 AAGSA--DGSVYIW 330
A+ + D ++ +W
Sbjct: 291 ASAALENDKTIKLW 304
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 121 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 180
+L TL G +V + + + + ++S+ + +W G+ T++GH K+ DV
Sbjct: 10 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 67
Query: 181 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 235
+ S S +VSA+ D+TLK+WD+ G C+ T+ HSN CN F+ I SG D
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 124
Query: 236 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 295
++R+WD++TGK L + AHS V+++ +R G++I++S D L ++D S + +L
Sbjct: 125 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 183
Query: 296 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 355
N S SP+ Y+ A + D ++ +W SK ++T H C ++
Sbjct: 184 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 239
Query: 356 L----GKPLASADKNGVVCVW 372
GK + S ++ +V +W
Sbjct: 240 FSVTGGKWIVSGSEDNLVYIW 260
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 5/204 (2%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 139
C + H F S ++SG D+S+++WD TG TL V +
Sbjct: 95 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 154
Query: 140 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 199
D ++++S +WD SG+ TL + + + +++++A D TLK+
Sbjct: 155 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 214
Query: 200 WDLHKGYCVNTIIFHSN---CNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 255
WD KG C+ T H N C FS+ G+ I SG D + +W++QT +++ ++ H
Sbjct: 215 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 274
Query: 256 SLAAVTSISLSRSGNIILTSGRDN 279
+ V S + + NII ++ +N
Sbjct: 275 T-DVVISTACHPTENIIASAALEN 297
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 140
K + H +S+ F N L S DK IK+W G T+ G + D+A +
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 141 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
D+ +++AS L +WDV+SG+ TL GH++ V + + S +VS ++D ++++W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 140
Query: 201 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 259
D+ G C+ T+ HS+ +A+ F+ DG I S DG R+WD +G+ L +
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 260 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 316
V+ + S +G IL + DN L+D + + N + CI + S
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 254
Query: 317 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 350
++ +GS D VYIW++ +IV+ L+ HT V+S
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 290
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 128/254 (50%), Gaps = 13/254 (5%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 143
I+ H+ G + + + +S L+S DK++K+WD ++G TL G V +
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 144 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 203
+++ S ++ +WDV +G+ TL H+D V AV ++ S +VS++YD ++WD
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL-IVSSSYDGLCRIWDTA 185
Query: 204 KGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH---SLA 258
G C+ T+I N + + FS +G+ I + +D L+LWD GK L H
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 245
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 318
+ S++ G I++ DNL ++++++ E+ L+ + V S + P E+ +
Sbjct: 246 IFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS----TACHPTENII 300
Query: 319 AAGSA--DGSVYIW 330
A+ + D ++ +W
Sbjct: 301 ASAALENDKTIKLW 314
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 121 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 180
+L TL G +V + + + + ++S+ + +W G+ T++GH K+ DV
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 77
Query: 181 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 235
+ S S +VSA+ D+TLK+WD+ G C+ T+ HSN CN F+ I SG D
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 134
Query: 236 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 295
++R+WD++TGK L + AHS V+++ +R G++I++S D L ++D S + +L
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 296 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 355
N S SP+ Y+ A + D ++ +W SK ++T H C ++
Sbjct: 194 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 249
Query: 356 L----GKPLASADKNGVVCVW 372
GK + S ++ +V +W
Sbjct: 250 FSVTGGKWIVSGSEDNLVYIW 270
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 5/204 (2%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 139
C + H F S ++SG D+S+++WD TG TL V +
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 140 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 199
D ++++S +WD SG+ TL + + + +++++A D TLK+
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224
Query: 200 WDLHKGYCVNTIIFHSN---CNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 255
WD KG C+ T H N C FS+ G+ I SG D + +W++QT +++ ++ H
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Query: 256 SLAAVTSISLSRSGNIILTSGRDN 279
+ V S + + NII ++ +N
Sbjct: 285 T-DVVISTACHPTENIIASAALEN 307
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 140
K + H +S+ F N L S DK IK+W G T+ G + D+A +
Sbjct: 15 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 74
Query: 141 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
D+ +++AS L +WDV+SG+ TL GH++ V + + S +VS ++D ++++W
Sbjct: 75 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 133
Query: 201 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 259
D+ G C+ T+ HS+ +A+ F+ DG I S DG R+WD +G+ L +
Sbjct: 134 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 193
Query: 260 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 316
V+ + S +G IL + DN L+D + + N + CI + S
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 247
Query: 317 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 350
++ +GS D VYIW++ +IV+ L+ HT V+S
Sbjct: 248 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 283
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 128/254 (50%), Gaps = 13/254 (5%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 143
I+ H+ G + + + +S L+S DK++K+WD ++G TL G V +
Sbjct: 60 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 119
Query: 144 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 203
+++ S ++ +WDV +G+ TL H+D V AV ++ S +VS++YD ++WD
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL-IVSSSYDGLCRIWDTA 178
Query: 204 KGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH---SLA 258
G C+ T+I N + + FS +G+ I + +D L+LWD GK L H
Sbjct: 179 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 238
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 318
+ S++ G I++ DNL ++++++ E+ L+ + V S + P E+ +
Sbjct: 239 IFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS----TACHPTENII 293
Query: 319 AAGSA--DGSVYIW 330
A+ + D ++ +W
Sbjct: 294 ASAALENDKTIKLW 307
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 121 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 180
+L TL G +V + + + + ++S+ + +W G+ T++GH K+ DV
Sbjct: 13 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 70
Query: 181 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 235
+ S S +VSA+ D+TLK+WD+ G C+ T+ HSN CN F+ I SG D
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 127
Query: 236 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 295
++R+WD++TGK L + AHS V+++ +R G++I++S D L ++D S + +L
Sbjct: 128 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 186
Query: 296 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 355
N S SP+ Y+ A + D ++ +W SK ++T H C ++
Sbjct: 187 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 242
Query: 356 L----GKPLASADKNGVVCVW 372
GK + S ++ +V +W
Sbjct: 243 FSVTGGKWIVSGSEDNLVYIW 263
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 5/204 (2%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 139
C + H F S ++SG D+S+++WD TG TL V +
Sbjct: 98 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 157
Query: 140 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 199
D ++++S +WD SG+ TL + + + +++++A D TLK+
Sbjct: 158 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 217
Query: 200 WDLHKGYCVNTIIFHSN---CNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 255
WD KG C+ T H N C FS+ G+ I SG D + +W++QT +++ ++ H
Sbjct: 218 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 277
Query: 256 SLAAVTSISLSRSGNIILTSGRDN 279
+ V S + + NII ++ +N
Sbjct: 278 T-DVVISTACHPTENIIASAALEN 300
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 135/271 (49%), Gaps = 13/271 (4%)
Query: 86 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSV 145
H +S+ F N L S DK IK+W G T+ G + D+A + D+ +
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 146 IAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG 205
++AS L +WDV+SG+ TL GH++ V + + S +VS ++D ++++WD+ G
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTG 142
Query: 206 YCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSIS 264
C+ T+ HS+ +A+ F+ DG I S DG R+WD +G+ L + V+ +
Sbjct: 143 MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 202
Query: 265 LSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES-----YVA 319
S +G IL + DN L+D + + N + CI + S ++
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTGGKWIV 256
Query: 320 AGSADGSVYIWSISKADIVRTLKEHTAPVLS 350
+GS D VYIW++ +IV+ L+ HT V+S
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQGHTDVVIS 287
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 127/254 (50%), Gaps = 13/254 (5%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 143
I+ H+ G + + + +S L+S DK++K+WD ++G TL G V +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 144 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 203
+++ S ++ +WDV +G TL H+D V AV ++ S +VS++YD ++WD
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSL-IVSSSYDGLCRIWDTA 182
Query: 204 KGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH---SLA 258
G C+ T+I N + + FS +G+ I + +D L+LWD GK L H
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 242
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 318
+ S++ G I++ DN+ ++++++ E+ L+ + V S + P E+ +
Sbjct: 243 IFANFSVT-GGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVIS----TACHPTENII 297
Query: 319 AAGSA--DGSVYIW 330
A+ + D ++ +W
Sbjct: 298 ASAALENDKTIKLW 311
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 132/261 (50%), Gaps = 19/261 (7%)
Query: 121 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 180
+L TL G +V + + + + ++S+ + +W G+ T++GH K+ DV
Sbjct: 17 ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 74
Query: 181 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 235
+ S S +VSA+ D+TLK+WD+ G C+ T+ HSN CN F+ I SG D
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 131
Query: 236 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 295
++R+WD++TG L + AHS V+++ +R G++I++S D L ++D S + +L
Sbjct: 132 ESVRIWDVKTGMCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 296 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 355
N S SP+ Y+ A + D ++ +W SK ++T H C ++
Sbjct: 191 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 246
Query: 356 L----GKPLASADKNGVVCVW 372
GK + S ++ +V +W
Sbjct: 247 FSVTGGKWIVSGSEDNMVYIW 267
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 5/204 (2%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 139
C + H F S ++SG D+S+++WD TG TL V +
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
Query: 140 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 199
D ++++S +WD SG+ TL + + + +++++A D TLK+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 200 WDLHKGYCVNTIIFHSN---CNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 255
WD KG C+ T H N C FS+ G+ I SG D + +W++QT +++ ++ H
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Query: 256 SLAAVTSISLSRSGNIILTSGRDN 279
+ V S + + NII ++ +N
Sbjct: 282 T-DVVISTACHPTENIIASAALEN 304
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 140
K + H +S+ F N L S DK IK+W G T+ G + D+A +
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 141 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
D+ +++AS L +WDV+SG+ TL GH++ V + + S +VS ++D ++++W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 140
Query: 201 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 259
D+ G C+ T+ HS+ +A+ F+ DG I S DG R+WD +G+ L +
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 260 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 316
V+ + S +G IL + DN L+D + + N + CI + S
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 254
Query: 317 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 350
++ +GS D VYIW++ +IV+ L+ HT V+S
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 290
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 128/254 (50%), Gaps = 13/254 (5%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 143
I+ H+ G + + + +S L+S DK++K+WD ++G TL G V +
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 144 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 203
+++ S ++ +WDV +G+ TL H+D V AV ++ S +VS++YD ++WD
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL-IVSSSYDGLCRIWDTA 185
Query: 204 KGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH---SLA 258
G C+ T+I N + + FS +G+ I + +D L+LWD GK L H
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 245
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 318
+ S++ G I++ DNL ++++++ E+ L+ + V S + P E+ +
Sbjct: 246 IFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS----TACHPTENII 300
Query: 319 AAGSA--DGSVYIW 330
A+ + D ++ +W
Sbjct: 301 ASAALENDKTIKLW 314
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 121 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 180
+L TL G +V + + + + ++S+ + +W G+ T++GH K+ DV
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 77
Query: 181 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 235
+ S S +VSA+ D+TLK+WD+ G C+ T+ HSN CN F+ I SG D
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 134
Query: 236 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 295
++R+WD++TGK L + AHS V+++ +R G++I++S D L ++D S + +L
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 296 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 355
N S SP+ Y+ A + D ++ +W SK ++T H C ++
Sbjct: 194 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 249
Query: 356 L----GKPLASADKNGVVCVW 372
GK + S ++ +V +W
Sbjct: 250 FSVTGGKWIVSGSEDNLVYIW 270
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 5/204 (2%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 139
C + H F S ++SG D+S+++WD TG TL V +
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 140 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 199
D ++++S +WD SG+ TL + + + +++++A D TLK+
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224
Query: 200 WDLHKGYCVNTIIFHSN---CNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 255
WD KG C+ T H N C FS+ G+ I SG D + +W++QT +++ ++ H
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Query: 256 SLAAVTSISLSRSGNIILTSGRDN 279
+ V S + + NII ++ +N
Sbjct: 285 T-DVVISTACHPTENIIASAALEN 307
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 142/290 (48%), Gaps = 16/290 (5%)
Query: 67 GAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL 126
G+EF + K + H +S+ F N L + DK IK+W G T+
Sbjct: 8 GSEFVKPNYA---LKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTI 64
Query: 127 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR 186
G + D+A + D+ +++AS L +WDV+SG+ TL GH++ V + + S
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSN 123
Query: 187 HVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQT 245
+VS ++D ++++WD+ G C+ T+ HS+ +A+ F+ DG I S DG R+WD +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 246 GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASN 305
G+ L + V+ + S +G IL + DN L+D + + N
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE---- 239
Query: 306 WSRSCISPDES-----YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 350
+ CI + S ++ +GS D VYIW++ +IV+ L+ HT V+S
Sbjct: 240 --KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 287
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 128/254 (50%), Gaps = 13/254 (5%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 143
I+ H+ G + + + +S L+S DK++K+WD ++G TL G V +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 144 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 203
+++ S ++ +WDV +G+ TL H+D V AV ++ S +VS++YD ++WD
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL-IVSSSYDGLCRIWDTA 182
Query: 204 KGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH---SLA 258
G C+ T+I N + + FS +G+ I + +D L+LWD GK L H
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 242
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 318
+ S++ G I++ DNL ++++++ E+ L+ + V S + P E+ +
Sbjct: 243 IFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS----TACHPTENII 297
Query: 319 AAGSA--DGSVYIW 330
A+ + D ++ +W
Sbjct: 298 ASAALENDKTIKLW 311
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 121 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 180
+L TL G +V + + + + A+S+ + +W G+ T++GH K+ DV
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGH--KLGISDV 74
Query: 181 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 235
+ S S +VSA+ D+TLK+WD+ G C+ T+ HSN CN F+ I SG D
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 131
Query: 236 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 295
++R+WD++TGK L + AHS V+++ +R G++I++S D L ++D S + +L
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 296 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 355
N S SP+ Y+ A + D ++ +W SK ++T H C ++
Sbjct: 191 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 246
Query: 356 L----GKPLASADKNGVVCVW 372
GK + S ++ +V +W
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIW 267
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 5/204 (2%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 139
C + H F S ++SG D+S+++WD TG TL V +
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 140 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 199
D ++++S +WD SG+ TL + + + +++++A D TLK+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 200 WDLHKGYCVNTIIFHSN---CNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 255
WD KG C+ T H N C FS+ G+ I SG D + +W++QT +++ ++ H
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Query: 256 SLAAVTSISLSRSGNIILTSGRDN 279
+ V S + + NII ++ +N
Sbjct: 282 T-DVVISTACHPTENIIASAALEN 304
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 127 bits (320), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 135/271 (49%), Gaps = 13/271 (4%)
Query: 86 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSV 145
H +S+ F N L S DK IK+W G T+ G + D+A + D+ +
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 146 IAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG 205
++AS L +WDV+SG+ TL GH++ V + + S +VS ++D ++++WD+ G
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTG 142
Query: 206 YCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSIS 264
C+ T+ HS+ +A+ F+ DG I S DG R+WD +G+ L + V+ +
Sbjct: 143 MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 202
Query: 265 LSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES-----YVA 319
S +G IL + DN L+D + + N + CI + S ++
Sbjct: 203 FSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTGGKWIV 256
Query: 320 AGSADGSVYIWSISKADIVRTLKEHTAPVLS 350
+GS D VYIW++ +IV+ L+ HT V+S
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQGHTDVVIS 287
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 128/254 (50%), Gaps = 13/254 (5%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 143
I+ H+ G + + + +S L+S DK++K+WD ++G TL G V +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 144 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 203
+++ S ++ +WDV +G TL H+D V AV ++ S +VS++YD ++WD
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSL-IVSSSYDGLCRIWDTA 182
Query: 204 KGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH---SLA 258
G C+ T+I N + + FS +G+ I + +D +L+LWD GK L H
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYC 242
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 318
+ S++ G I++ DN+ ++++++ E+ L+ + V S + P E+ +
Sbjct: 243 IFANFSVT-GGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVIS----TACHPTENII 297
Query: 319 AAGSA--DGSVYIW 330
A+ + D ++ +W
Sbjct: 298 ASAALENDKTIKLW 311
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 131/261 (50%), Gaps = 19/261 (7%)
Query: 121 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 180
+L TL G +V + + + + ++S+ + +W G+ T++GH K+ DV
Sbjct: 17 ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 74
Query: 181 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 235
+ S S +VSA+ D+TLK+WD+ G C+ T+ HSN CN F+ I SG D
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 131
Query: 236 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 295
++R+WD++TG L + AHS V+++ +R G++I++S D L ++D S + +L
Sbjct: 132 ESVRIWDVKTGMCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 296 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 355
N S SP+ Y+ A + D + +W SK ++T H C ++
Sbjct: 191 IDDDNPPV---SFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 246
Query: 356 L----GKPLASADKNGVVCVW 372
GK + S ++ +V +W
Sbjct: 247 FSVTGGKWIVSGSEDNMVYIW 267
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 94/204 (46%), Gaps = 5/204 (2%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 139
C + H F S ++SG D+S+++WD TG TL V +
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
Query: 140 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 199
D ++++S +WD SG+ TL + + + +++++A D LK+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKL 221
Query: 200 WDLHKGYCVNTIIFHSN---CNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 255
WD KG C+ T H N C FS+ G+ I SG D + +W++QT +++ ++ H
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Query: 256 SLAAVTSISLSRSGNIILTSGRDN 279
+ V S + + NII ++ +N
Sbjct: 282 T-DVVISTACHPTENIIASAALEN 304
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 139/268 (51%), Gaps = 14/268 (5%)
Query: 74 STVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSV 133
S V C + H GG S N +ISG D+++K+W+ TG TLYG +V
Sbjct: 145 SAVTGKCLRTLVGHTGGVWSSQMRDNI--IISGSTDRTLKVWNAETGECIHTLYGHTSTV 202
Query: 134 LDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY 193
+ + H+ R V++ S L VWD+ +G+ H L GH V AV + R VVS AY
Sbjct: 203 RCMHL-HEKR-VVSGSRDATLRVWDIETGQCLHVLMGH---VAAVRCVQYDGRRVVSGAY 257
Query: 194 DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA 253
D +KVWD C++T+ H+N + DG + SG +D ++R+WD++TG + +
Sbjct: 258 DFMVKVWDPETETCLHTLQGHTN-RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT 316
Query: 254 AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP 313
H ++TS + NI+++ D+ ++DI++ + +L+ + + +C+
Sbjct: 317 GHQ--SLTS-GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS---AVTCLQF 370
Query: 314 DESYVAAGSADGSVYIWSISKADIVRTL 341
++++V S DG+V +W + + +R L
Sbjct: 371 NKNFVITSSDDGTVKLWDLKTGEFIRNL 398
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 102/202 (50%), Gaps = 13/202 (6%)
Query: 145 VIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 204
+++ S N L VW +G+ TL GHT V + S++ ++S + DRTLKVW+
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS---SQMRDNIIISGSTDRTLKVWNAET 188
Query: 205 GYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSIS 264
G C++T+ H++ + + + SG D LR+WDI+TG+ L + H +AAV +
Sbjct: 189 GECIHTLYGHTS-TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH-VAAVRCVQ 246
Query: 265 LSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD 324
G +++ D + ++D + +L+ NRV S + D +V +GS D
Sbjct: 247 Y--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS------LQFDGIHVVSGSLD 298
Query: 325 GSVYIWSISKADIVRTLKEHTA 346
S+ +W + + + TL H +
Sbjct: 299 TSIRVWDVETGNCIHTLTGHQS 320
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 13/162 (8%)
Query: 56 QVDGVVRRSEEGA-EFFAESTVPST--CKHKINAHEGGCASILFEYNSARLISGGQDKSI 112
Q DG RR GA +F + P T C H + H S+ +++ ++SG D SI
Sbjct: 246 QYDG--RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSI 301
Query: 113 KLWDTNTGSLSSTLYG--CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTG 170
++WD TG+ TL G L S ++L DN +++ ++ + + +WD+ +G+ TL G
Sbjct: 302 RVWDVETGNCIHTLTGHQSLTSGMELK---DN-ILVSGNADSTVKIWDIKTGQCLQTLQG 357
Query: 171 HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII 212
AV + + V++++ D T+K+WDL G + ++
Sbjct: 358 PNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 399
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 11/147 (7%)
Query: 226 GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFD 285
G I SG D L++W TGK L + H+ +S NII++ D +++
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS---QMRDNIIISGSTDRTLKVWN 185
Query: 286 IRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHT 345
+ E +L + V C+ E V +GS D ++ +W I + L H
Sbjct: 186 AETGECIHTLYGHTSTV------RCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 239
Query: 346 APVLSCSWSGLGKPLASADKNGVVCVW 372
A V + G+ + S + +V VW
Sbjct: 240 AAVRCVQYD--GRRVVSGAYDFMVKVW 264
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 154/293 (52%), Gaps = 13/293 (4%)
Query: 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 140
++++ AH + F + + S DK++KLW+ N G L TL G SV +A +
Sbjct: 9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSP 67
Query: 141 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
D +++ +AS + +W+ N G++ TLTGH+ V V S + + SA+ D+T+K+W
Sbjct: 68 DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLW 125
Query: 201 DLHKGYCVNTIIFHSNCN-ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 259
+ G + T+ HS+ +AFS DGQTI S D ++LW+ + G+LL + HS ++
Sbjct: 126 N-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS-SS 182
Query: 260 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVA 319
V ++ S G I ++ D L++ R+ ++ +L + V SPD +A
Sbjct: 183 VWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRG----VAFSPDGQTIA 237
Query: 320 AGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
+ S D +V +W+ +++TL H++ V ++ G+ +ASA + V +W
Sbjct: 238 SASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 152/290 (52%), Gaps = 13/290 (4%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 143
+ H + F + + S DK++KLW+ N G L TL G SV +A D +
Sbjct: 217 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQ 275
Query: 144 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 203
++ +AS + +W+ N G++ TLTGH+ V V S + + SA+ D+T+K+W+
Sbjct: 276 TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN-R 332
Query: 204 KGYCVNTIIFHSNCN-ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTS 262
G + T+ HS+ +AFS DGQTI S D ++LW+ + G+LL + HS ++V
Sbjct: 333 NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS-SSVRG 390
Query: 263 ISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS 322
++ S G I ++ D L++ R+ ++ +L + V W SPD+ +A+ S
Sbjct: 391 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV---WG-VAFSPDDQTIASAS 445
Query: 323 ADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
D +V +W+ +++TL H++ V ++S G+ +ASA + V +W
Sbjct: 446 DDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 149/290 (51%), Gaps = 13/290 (4%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 143
+ H + F + + S DK++KLW+ N G TL G SV +A + D +
Sbjct: 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQ 357
Query: 144 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 203
++ +AS + +W+ N G++ TLTGH+ V V S + + SA+ D+T+K+W+
Sbjct: 358 TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN-R 414
Query: 204 KGYCVNTIIFHSNCN-ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTS 262
G + T+ HS+ +AFS D QTI S D ++LW+ + G+LL + HS ++V
Sbjct: 415 NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHS-SSVRG 472
Query: 263 ISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS 322
++ S G I ++ D L++ R+ ++ +L + V SPD +A+ S
Sbjct: 473 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRG----VAFSPDGQTIASAS 527
Query: 323 ADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
D +V +W+ +++TL H++ V ++S G+ +ASA + V +W
Sbjct: 528 DDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 158/314 (50%), Gaps = 33/314 (10%)
Query: 83 KINAHEGGCASILFEYN---SARLISGGQDKSIKLWDTNTGSLSST---------LYGCL 130
++ H G S+ + +++S +DK++ W N SS L G
Sbjct: 8 QLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHS 67
Query: 131 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVS 190
V D+A++++ ++AS ++L +W++ +G+ ++ GHT V +V S +R +VS
Sbjct: 68 AFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSP-DNRQIVS 126
Query: 191 AAYDRTLKVWDLHKGYCVNTII--FHSN---CNALAFSMDGQTIFSGHIDGNLRLWDIQT 245
D L+VW++ KG C++T+ H++ C + S+D I SG D +++WD+ T
Sbjct: 127 GGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLAT 185
Query: 246 GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASN 305
G+L++++ H+ VTS+++S G++ +S +D + L+D+ E + A G +
Sbjct: 186 GRLVTDLKGHT-NYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEM-AAGAPI--- 240
Query: 306 WSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL-KEH------TAPVLSCSWSGLGK 358
++ C SP+ ++ A + G + I+ + DI+ L EH +S +WS G
Sbjct: 241 -NQICFSPNRYWMCAATEKG-IRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGS 298
Query: 359 PLASADKNGVVCVW 372
L S + V+ VW
Sbjct: 299 TLYSGYTDNVIRVW 312
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 120/260 (46%), Gaps = 13/260 (5%)
Query: 83 KINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDN 142
++ H + + N +S D S++LW+ G G VL +A + DN
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 143 RSVIAASSSNNLYVWDVNSGRVRHTLT--GHTDKVCAVDVSK-ISSRHVVSAAYDRTLKV 199
R +++ N L VW+V G HTL+ HTD V V S + + +VS +D +KV
Sbjct: 122 RQIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 200 WDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLA 258
WDL G V + H+N ++ S DG S DG RLWD+ G+ LSE+AA A
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAG--A 238
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI----SPD 314
+ I S + + + + +FD+ + ++ L A ++ + C+ S D
Sbjct: 239 PINQICFSPNRYWMCAATEKGIR-IFDLENKDIIVEL-APEHQGSKKIVPECVSIAWSAD 296
Query: 315 ESYVAAGSADGSVYIWSISK 334
S + +G D + +W +S+
Sbjct: 297 GSTLYSGYTDNVIRVWGVSE 316
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 106/216 (49%), Gaps = 11/216 (5%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTN---TGSLSSTLYGCLGSVLDL 136
C++K H S+ F ++ +++SGG+D ++++W+ +LS + S +
Sbjct: 101 CQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRF 160
Query: 137 AITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRT 196
+ + D +++ N + VWD+ +GR+ L GHT+ V +V VS S S+ D
Sbjct: 161 SPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSL-CASSDKDGV 219
Query: 197 LKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS 256
++WDL KG ++ + + N + FS + + + G +R++D++ ++ E+A
Sbjct: 220 ARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKG-IRIFDLENKDIIVELAPEH 278
Query: 257 ------LAAVTSISLSRSGNIILTSGRDNLHNLFDI 286
+ SI+ S G+ + + DN+ ++ +
Sbjct: 279 QGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGV 314
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 137/313 (43%), Gaps = 27/313 (8%)
Query: 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 140
K+ ++ H ++F + ++S +D +IK+WD TG TL G SV D++ H
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 141 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
+ + + S+ + +WD T+ GH V +V + + H+VSA+ D+T+K+W
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMW 219
Query: 201 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH---- 255
++ GYCV T H + + DG I S D +R+W + T + +E+ H
Sbjct: 220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279
Query: 256 ------------SLAAVTSISLSRSGN---IILTSGRDNLHNLFDIRSLEVCGSLRATGN 300
S++ T +SG +L+ RD ++D+ S +C + G+
Sbjct: 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV-STGMC-LMTLVGH 337
Query: 301 RVASNWSRSCI-SPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKP 359
NW R + ++ + + D ++ +W ++TL H V S +
Sbjct: 338 ---DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 394
Query: 360 LASADKNGVVCVW 372
+ + + V VW
Sbjct: 395 VVTGSVDQTVKVW 407
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 21/228 (9%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 139
C ++ H+ +S+ N ++S +DK+IK+W+ TG T G V +
Sbjct: 184 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 140 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAA------- 192
D + + S+ + VW V + + L H V + + SS +S A
Sbjct: 244 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK 303
Query: 193 ------------YDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLR 239
D+T+K+WD+ G C+ T++ H N + F G+ I S D LR
Sbjct: 304 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR 363
Query: 240 LWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR 287
+WD + + + + AH VTS+ ++ ++T D +++ R
Sbjct: 364 VWDYKNKRCMKTLNAHE-HFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 149/324 (45%), Gaps = 41/324 (12%)
Query: 81 KHKINAHEGGCASILFEYNSARLI-SGGQDKSIKLW-----DTNTGSLSSTLYGCLGSVL 134
K + AH +I ++A +I S +DKSI LW D G L G V
Sbjct: 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVE 434
Query: 135 DLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD 194
D+ ++ D + ++ S L +WD+ +G GHT V +V S + +R +VSA+ D
Sbjct: 435 DVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS-LDNRQIVSASRD 493
Query: 195 RTLKVWDLHKGYCVNTIIFHS-------NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK 247
RT+K+W+ G C TI +C + + TI S D +++W++ K
Sbjct: 494 RTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552
Query: 248 LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS 307
L S +A H+ V+++++S G++ + G+D + L+D+ + SL A N V
Sbjct: 553 LRSTLAGHT-GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA--NSVI---H 606
Query: 308 RSCISPDESYVAAGSADGSVYIWSISKADIVRTLK----------EHTAP------VLSC 351
C SP+ ++ A + G + IW + IV LK +++ P V+ C
Sbjct: 607 ALCFSPNRYWLCAATEHG-IKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYC 665
Query: 352 S---WSGLGKPLASADKNGVVCVW 372
+ WS G L S +GV+ VW
Sbjct: 666 TSLNWSADGSTLFSGYTDGVIRVW 689
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 128/281 (45%), Gaps = 35/281 (12%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 139
+ ++ H ++ + +SG D ++LWD G + G VL +A +
Sbjct: 422 AQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS 481
Query: 140 HDNRSVIAASSSNNLYVWDVNSGRVRHTLT----GHTDKVCAVDVSKISSRH-VVSAAYD 194
DNR +++AS + +W+ G ++T++ GH D V V S + + +VSA++D
Sbjct: 482 LDNRQIVSASRDRTIKLWNT-LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD 540
Query: 195 RTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA 253
+T+KVW+L +T+ H+ + +A S DG SG DG + LWD+ GK L +
Sbjct: 541 KTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE 600
Query: 254 AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR----------------A 297
A+S+ S +R L + ++ ++D+ S + L+ A
Sbjct: 601 ANSVIHALCFSPNR---YWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAA 657
Query: 298 TGNRV----ASNWSRSCISPDESYVAAGSADGSVYIWSISK 334
T +V + NWS D S + +G DG + +W I +
Sbjct: 658 TKRKVIYCTSLNWSA-----DGSTLFSGYTDGVIRVWGIGR 693
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 106/219 (48%), Gaps = 14/219 (6%)
Query: 164 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-----GYCVNTIIFHSN-C 217
++ T+ HTD V A+ ++ +VSA+ D+++ +W L K G + HS+
Sbjct: 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFV 433
Query: 218 NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR 277
+ S DGQ SG DG LRLWD+ G H+ V S++ S I+++ R
Sbjct: 434 EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHT-KDVLSVAFSLDNRQIVSASR 492
Query: 278 DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI--SPD--ESYVAAGSADGSVYIWSIS 333
D L++ +L C + G +W SC+ SP+ + + + S D +V +W++S
Sbjct: 493 DRTIKLWN--TLGECKYTISEGGEGHRDWV-SCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 334 KADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
+ TL HT V + + S G AS K+GVV +W
Sbjct: 550 NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 27/288 (9%)
Query: 96 FEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLY 155
+Y+ +++SG +D +IK+WD NT L G GSVL + +D R +I SS + +
Sbjct: 139 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL--CLQYDERVIITGSSDSTVR 196
Query: 156 VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL--HKGYCVNTIIF 213
VWDVN+G + +TL H + V + + ++ +V+ + DR++ VWD+ + ++
Sbjct: 197 VWDVNTGEMLNTLIHHCEAVLHL---RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV 253
Query: 214 HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIIL 273
D + I S D +++W+ T + + + H L +++
Sbjct: 254 GHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA---CLQYRDRLVV 310
Query: 274 TSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS 333
+ DN L+DI L V CI D + +G+ DG + +W +
Sbjct: 311 SGSSDNTIRLWDIECGACLRVLEGHEELV------RCIRFDNKRIVSGAYDGKIKVWDLV 364
Query: 334 KA---------DIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
A +RTL EH+ V + + S+ + + +W
Sbjct: 365 AALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIW 410
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 11/179 (6%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 139
CK + H G + + +Y+ +I+G D ++++WD NTG + +TL +VL L
Sbjct: 165 CKRILTGHTG--SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF- 221
Query: 140 HDNRSVIAASSSNNLYVWDVNSG---RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRT 196
+N ++ S ++ VWD+ S +R L GH AV+V +++VSA+ DRT
Sbjct: 222 -NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR---AAVNVVDFDDKYIVSASGDRT 277
Query: 197 LKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 255
+KVW+ V T+ H A D + + SG D +RLWDI+ G L + H
Sbjct: 278 IKVWNTSTCEFVRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGH 335
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 18/136 (13%)
Query: 78 STCK--HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLD 135
STC+ +N H+ G A + +Y ++SG D +I+LWD G+ L G L
Sbjct: 284 STCEFVRTLNGHKRGIACL--QYRDRLVVSGSSDNTIRLWDIECGACLRVLEG--HEELV 339
Query: 136 LAITHDNRSVIAASSSNNLYVWDVNSGR---------VRHTLTGHTDKVCAVDVSKISSR 186
I DN+ +++ + + VWD+ + TL H+ +V + +
Sbjct: 340 RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--- 396
Query: 187 HVVSAAYDRTLKVWDL 202
+VS+++D T+ +WD
Sbjct: 397 QIVSSSHDDTILIWDF 412
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 285 DIRSLEV---CG--SLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVR 339
DI ++E CG SL+ R ++ C+ D+ + +G D ++ IW + + R
Sbjct: 108 DIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKR 167
Query: 340 TLKEHTAPVL 349
L HT VL
Sbjct: 168 ILTGHTGSVL 177
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 138/318 (43%), Gaps = 18/318 (5%)
Query: 69 EFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG 128
E+ + T+ + + + H F + R+ S G DK+++++ TG +
Sbjct: 603 EWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA 662
Query: 129 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKV-CAVDVSKISSRH 187
VL A + D+ + S+ + +WD +G++ HT H+++V C +K +
Sbjct: 663 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL 722
Query: 188 VVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTG 246
+ + + D LK+WDL++ C NT+ H+N N FS D + + S DG LRLWD+++
Sbjct: 723 LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 782
Query: 247 K-----------LLSEVAAHSLAAVTS-ISLSRSGNIILTSGRDNLHNLFDIRSLEVCGS 294
L SE + + S S G+ I+ + ++ + LFDI + +
Sbjct: 783 NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAE 841
Query: 295 LRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWS 354
+ TG+ + SP + + V +W+I V + H + V +S
Sbjct: 842 IH-TGHHSTIQYCD--FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS 898
Query: 355 GLGKPLASADKNGVVCVW 372
G +A + + VW
Sbjct: 899 PDGSSFLTASDDQTIRVW 916
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 20/204 (9%)
Query: 86 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSV 145
H+ I F + LIS +D I++W+ TG L +V D + D+R +
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSR-L 1065
Query: 146 IAASSSNNLYVWDVNSGRVRHTLTGHTDKV--CAV--DVSKISSRHVVSAAYDRTLKVWD 201
++ S + VW+V +GR+ T H V CA+ D +K SS + D+T K+W
Sbjct: 1066 LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSS-----TSADKTAKIWS 1120
Query: 202 LHKGYCVNTIIFHSNC-NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA- 259
++ + H+ C AFS+DG + +G +G +R+W++ G+LL A S+
Sbjct: 1121 FDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEG 1180
Query: 260 -------VTSISLSRSGNIILTSG 276
VT + S ++++G
Sbjct: 1181 TATHGGWVTDVCFSPDSKTLVSAG 1204
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 69/350 (19%), Positives = 130/350 (37%), Gaps = 71/350 (20%)
Query: 82 HKINAH--EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 139
H + H + C + N L +G D +KLWD N +T++G SV +
Sbjct: 700 HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS 759
Query: 140 HDNRSVIAASSSNNLYVWDVNSGR------VRHTLTGHTDKVCAVDVS------KISSRH 187
D+ + + S+ L +WDV S V+ D V+V
Sbjct: 760 PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK 819
Query: 188 VVSAAYDRTLKVWDLHKG--------------------------------YCV-----NT 210
++ AA ++ L ++D+H YCV ++
Sbjct: 820 IIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS 878
Query: 211 IIFHSNC-------NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSI 263
+ ++C + + FS DG + + D +R+W+ + + ++I
Sbjct: 879 RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK-----------KVCKNSAI 927
Query: 264 SLSRSGNIILTSGRDNLHNLFDIRSLE-VCGSLRATGNRVASNWSRSCISPDESYVAAGS 322
L + +++ + + +IR L+ + G + S C+SP YVA G
Sbjct: 928 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGD 987
Query: 323 ADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
DG++ I + + + H V ++ GK L S+ ++ V+ VW
Sbjct: 988 EDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1037
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 119/283 (42%), Gaps = 20/283 (7%)
Query: 94 ILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNN 153
++F + + ++ D++I++W+T +S + L +D+ + V+A +
Sbjct: 895 VMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI--VLKQEIDVVFQENETMVLAVDNIRG 952
Query: 154 LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY---DRTLKVWDLHKGYCVNT 210
L + +G++ + C S H+ A+ D +K+ +L ++
Sbjct: 953 LQLIAGKTGQIDYLPEAQVSCCCL-------SPHLEYVAFGDEDGAIKIIELPNNRVFSS 1005
Query: 211 IIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG 269
+ H + F+ DG+T+ S D +++W+ QTG + + AH V L +
Sbjct: 1006 GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQ-ETVKDFRLLQDS 1063
Query: 270 NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYI 329
+L+ D ++++ + + V S IS D + ++ SAD + I
Sbjct: 1064 R-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS----CAISSDATKFSSTSADKTAKI 1118
Query: 330 WSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
WS + LK H V ++S G LA+ D NG + +W
Sbjct: 1119 WSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1161
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 74 STVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSV 133
S P + + H G + F +S L+S G +K W+ TG S T Y ++
Sbjct: 1171 SCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNL 1228
Query: 134 LDLAITHDNRSVIAASSSNNLYVWDV 159
+ ++ D R+ + + LY+ V
Sbjct: 1229 KKIHVSPDFRTYVTVDNLGILYILQV 1254
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 36/84 (42%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 143
H+G S ++ + S DK+ K+W + S L G G V A + D
Sbjct: 1088 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI 1147
Query: 144 SVIAASSSNNLYVWDVNSGRVRHT 167
+ + + +W+V+ G++ H+
Sbjct: 1148 LLATGDDNGEIRIWNVSDGQLLHS 1171
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 138/318 (43%), Gaps = 18/318 (5%)
Query: 69 EFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG 128
E+ + T+ + + + H F + R+ S G DK+++++ TG +
Sbjct: 596 EWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA 655
Query: 129 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKV-CAVDVSKISSRH 187
VL A + D+ + S+ + +WD +G++ HT H+++V C +K +
Sbjct: 656 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL 715
Query: 188 VVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTG 246
+ + + D LK+WDL++ C NT+ H+N N FS D + + S DG LRLWD+++
Sbjct: 716 LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 775
Query: 247 K-----------LLSEVAAHSLAAVTS-ISLSRSGNIILTSGRDNLHNLFDIRSLEVCGS 294
L SE + + S S G+ I+ + ++ + LFDI + +
Sbjct: 776 NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAE 834
Query: 295 LRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWS 354
+ TG+ + SP + + V +W+I V + H + V +S
Sbjct: 835 IH-TGHHSTIQYCD--FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS 891
Query: 355 GLGKPLASADKNGVVCVW 372
G +A + + VW
Sbjct: 892 PDGSSFLTASDDQTIRVW 909
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 20/204 (9%)
Query: 86 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSV 145
H+ I F + LIS +D I++W+ TG L +V D + D+R +
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSR-L 1058
Query: 146 IAASSSNNLYVWDVNSGRVRHTLTGHTDKV--CAV--DVSKISSRHVVSAAYDRTLKVWD 201
++ S + VW+V +GR+ T H V CA+ D +K SS + D+T K+W
Sbjct: 1059 LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSS-----TSADKTAKIWS 1113
Query: 202 LHKGYCVNTIIFHSNC-NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA- 259
++ + H+ C AFS+DG + +G +G +R+W++ G+LL A S+
Sbjct: 1114 FDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEG 1173
Query: 260 -------VTSISLSRSGNIILTSG 276
VT + S ++++G
Sbjct: 1174 TATHGGWVTDVCFSPDSKTLVSAG 1197
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 69/350 (19%), Positives = 130/350 (37%), Gaps = 71/350 (20%)
Query: 82 HKINAH--EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 139
H + H + C + N L +G D +KLWD N +T++G SV +
Sbjct: 693 HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS 752
Query: 140 HDNRSVIAASSSNNLYVWDVNSGR------VRHTLTGHTDKVCAVDVS------KISSRH 187
D+ + + S+ L +WDV S V+ D V+V
Sbjct: 753 PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK 812
Query: 188 VVSAAYDRTLKVWDLHKG--------------------------------YCV-----NT 210
++ AA ++ L ++D+H YCV ++
Sbjct: 813 IIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS 871
Query: 211 IIFHSNC-------NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSI 263
+ ++C + + FS DG + + D +R+W+ + + ++I
Sbjct: 872 RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK-----------KVCKNSAI 920
Query: 264 SLSRSGNIILTSGRDNLHNLFDIRSLE-VCGSLRATGNRVASNWSRSCISPDESYVAAGS 322
L + +++ + + +IR L+ + G + S C+SP YVA G
Sbjct: 921 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGD 980
Query: 323 ADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
DG++ I + + + H V ++ GK L S+ ++ V+ VW
Sbjct: 981 EDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1030
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 119/283 (42%), Gaps = 20/283 (7%)
Query: 94 ILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNN 153
++F + + ++ D++I++W+T +S + L +D+ + V+A +
Sbjct: 888 VMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI--VLKQEIDVVFQENETMVLAVDNIRG 945
Query: 154 LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY---DRTLKVWDLHKGYCVNT 210
L + +G++ + C S H+ A+ D +K+ +L ++
Sbjct: 946 LQLIAGKTGQIDYLPEAQVSCCCL-------SPHLEYVAFGDEDGAIKIIELPNNRVFSS 998
Query: 211 IIFHSNC-NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG 269
+ H + F+ DG+T+ S D +++W+ QTG + + AH V L +
Sbjct: 999 GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQ-ETVKDFRLLQDS 1056
Query: 270 NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYI 329
+L+ D ++++ + + V S IS D + ++ SAD + I
Sbjct: 1057 R-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS----CAISSDATKFSSTSADKTAKI 1111
Query: 330 WSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
WS + LK H V ++S G LA+ D NG + +W
Sbjct: 1112 WSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 74 STVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSV 133
S P + + H G + F +S L+S G +K W+ TG S T Y ++
Sbjct: 1164 SCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNL 1221
Query: 134 LDLAITHDNRSVIAASSSNNLYVWDV 159
+ ++ D R+ + + LY+ V
Sbjct: 1222 KKIHVSPDFRTYVTVDNLGILYILQV 1247
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 36/84 (42%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 143
H+G S ++ + S DK+ K+W + S L G G V A + D
Sbjct: 1081 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI 1140
Query: 144 SVIAASSSNNLYVWDVNSGRVRHT 167
+ + + +W+V+ G++ H+
Sbjct: 1141 LLATGDDNGEIRIWNVSDGQLLHS 1164
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 140/290 (48%), Gaps = 29/290 (10%)
Query: 103 LISGGQDKSIKLW-----DTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW 157
L+S +DK++ W D G + G V D +T D ++AS L +W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 158 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC 217
DV +G GH V +VD+ K +S ++S + D+T+KVW + KG C+ T++ H++
Sbjct: 93 DVATGETYQRFVGHKSDVXSVDIDKKASX-IISGSRDKTIKVWTI-KGQCLATLLGHNDW 150
Query: 218 NALAFSM-------DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN 270
+ + D TI S D ++ W++ ++ ++ H+ + + +++ S G
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHN-SNINTLTASPDGT 209
Query: 271 IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIW 330
+I ++G+D L+++ + + +L A + V S SP+ ++AA +A G + ++
Sbjct: 210 LIASAGKDGEIXLWNLAAKKAXYTLSAQ-DEVFS----LAFSPNRYWLAAATATG-IKVF 263
Query: 331 SISKADIVRTLKEHTA-------P-VLSCSWSGLGKPLASADKNGVVCVW 372
S+ +V L+ A P +S +WS G+ L + + V+ VW
Sbjct: 264 SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 79/156 (50%), Gaps = 12/156 (7%)
Query: 99 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 158
+S +IS G DK +K W+ N + + G ++ L + D + +A + +W+
Sbjct: 165 DSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Query: 159 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI------- 211
+ + + +TL+ D+V ++ S +R+ ++AA +KV+ L Y V+ +
Sbjct: 225 LAAKKAXYTLSAQ-DEVFSLAFSP--NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGY 281
Query: 212 --IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT 245
+ +LA+S DGQT+F+G+ D +R+W + T
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXT 317
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 20/222 (9%)
Query: 164 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW-----DLHKGYCVNTIIFHSN-C 217
+R TL GH V ++ S ++SA+ D+TL W D G V + HS+
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 218 NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR 277
+ DG S D LRLWD+ TG+ H + V S+ + + + I++ R
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK-SDVXSVDIDKKASXIISGSR 127
Query: 278 DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE-------SYVAAGSADGSVYIW 330
D ++ I+ + +L + V S+ + P+E + ++AG+ D V W
Sbjct: 128 DKTIKVWTIKG-QCLATLLGHNDWV----SQVRVVPNEKADDDSVTIISAGN-DKXVKAW 181
Query: 331 SISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
++++ I H + + + + S G +ASA K+G + +W
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLW 223
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 140/290 (48%), Gaps = 29/290 (10%)
Query: 103 LISGGQDKSIKLW-----DTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW 157
L+S +DK++ W D G + G V D +T D ++AS L +W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 158 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC 217
DV +G GH V +VD+ K +S ++S + D+T+KVW + KG C+ T++ H++
Sbjct: 93 DVATGETYQRFVGHKSDVMSVDIDKKASM-IISGSRDKTIKVWTI-KGQCLATLLGHNDW 150
Query: 218 NALAFSM-------DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN 270
+ + D TI S D ++ W++ ++ ++ H+ + + +++ S G
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN-SNINTLTASPDGT 209
Query: 271 IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIW 330
+I ++G+D L+++ + + +L A + V S SP+ ++AA +A G + ++
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFS----LAFSPNRYWLAAATATG-IKVF 263
Query: 331 SISKADIVRTLKEHTA-------P-VLSCSWSGLGKPLASADKNGVVCVW 372
S+ +V L+ A P +S +WS G+ L + + V+ VW
Sbjct: 264 SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 79/156 (50%), Gaps = 12/156 (7%)
Query: 99 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 158
+S +IS G DK +K W+ N + + G ++ L + D + +A + +W+
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 159 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI------- 211
+ + + +TL+ D+V ++ S +R+ ++AA +KV+ L Y V+ +
Sbjct: 225 LAAKKAMYTLSAQ-DEVFSLAFSP--NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGY 281
Query: 212 --IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT 245
+ +LA+S DGQT+F+G+ D +R+W + T
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 20/222 (9%)
Query: 164 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW-----DLHKGYCVNTIIFHSN-C 217
+R TL GH V ++ S ++SA+ D+TL W D G V + HS+
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 218 NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR 277
+ DG S D LRLWD+ TG+ H + V S+ + + ++I++ R
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK-SDVMSVDIDKKASMIISGSR 127
Query: 278 DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE-------SYVAAGSADGSVYIW 330
D ++ I+ + +L + V S+ + P+E + ++AG+ D V W
Sbjct: 128 DKTIKVWTIKG-QCLATLLGHNDWV----SQVRVVPNEKADDDSVTIISAGN-DKMVKAW 181
Query: 331 SISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
++++ I H + + + + S G +ASA K+G + +W
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 140/290 (48%), Gaps = 29/290 (10%)
Query: 103 LISGGQDKSIKLW-----DTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW 157
L+S +DK++ W D G + G V D +T D ++AS L +W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 158 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC 217
DV +G GH V +VD+ K +S ++S + D+T+KVW + KG C+ T++ H++
Sbjct: 93 DVATGETYQRFVGHKSDVMSVDIDKKASM-IISGSRDKTIKVWTI-KGQCLATLLGHNDW 150
Query: 218 NALAFSM-------DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN 270
+ + D TI S D ++ W++ ++ ++ H+ + + +++ S G
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN-SNINTLTASPDGT 209
Query: 271 IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIW 330
+I ++G+D L+++ + + +L A + V S SP+ ++AA +A G + ++
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFS----LAFSPNRYWLAAATATG-IKVF 263
Query: 331 SISKADIVRTLKEHTA-------P-VLSCSWSGLGKPLASADKNGVVCVW 372
S+ +V L+ A P +S +WS G+ L + + V+ VW
Sbjct: 264 SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 77/152 (50%), Gaps = 12/152 (7%)
Query: 99 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 158
+S +IS G DK +K W+ N + + G ++ L + D + +A + +W+
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 159 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI------- 211
+ + + +TL+ D+V ++ S +R+ ++AA +KV+ L Y V+ +
Sbjct: 225 LAAKKAMYTLSAQ-DEVFSLAFSP--NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGY 281
Query: 212 --IFHSNCNALAFSMDGQTIFSGHIDGNLRLW 241
+ +LA+S DGQT+F+G+ D +R+W
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 20/222 (9%)
Query: 164 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW-----DLHKGYCVNTIIFHSN-C 217
+R TL GH V ++ S ++SA+ D+TL W D G V + HS+
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 218 NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR 277
+ DG S D LRLWD+ TG+ H + V S+ + + ++I++ R
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK-SDVMSVDIDKKASMIISGSR 127
Query: 278 DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE-------SYVAAGSADGSVYIW 330
D ++ I+ + +L + V S+ + P+E + ++AG+ D V W
Sbjct: 128 DKTIKVWTIKG-QCLATLLGHNDWV----SQVRVVPNEKADDDSVTIISAGN-DKMVKAW 181
Query: 331 SISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
++++ I H + + + + S G +ASA K+G + +W
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 140/290 (48%), Gaps = 29/290 (10%)
Query: 103 LISGGQDKSIKLW-----DTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW 157
L+S +DK++ W D G + G V D +T D ++AS L +W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 158 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC 217
DV +G GH V +VD+ K +S ++S + D+T+KVW + KG C+ T++ H++
Sbjct: 93 DVATGETYQRFVGHKSDVMSVDIDKKASM-IISGSRDKTIKVWTI-KGQCLATLLGHNDW 150
Query: 218 NALAFSM-------DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN 270
+ + D TI S D ++ W++ ++ ++ H+ + + +++ S G
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN-SNINTLTASPDGT 209
Query: 271 IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIW 330
+I ++G+D L+++ + + +L A + V S SP+ ++AA +A G + ++
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFS----LAFSPNRYWLAAATATG-IKVF 263
Query: 331 SISKADIVRTLKEHTA-------P-VLSCSWSGLGKPLASADKNGVVCVW 372
S+ +V L+ A P +S +WS G+ L + + V+ VW
Sbjct: 264 SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 79/156 (50%), Gaps = 12/156 (7%)
Query: 99 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 158
+S +IS G DK +K W+ N + + G ++ L + D + +A + +W+
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 159 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI------- 211
+ + + +TL+ D+V ++ S +R+ ++AA +KV+ L Y V+ +
Sbjct: 225 LAAKKAMYTLSAQ-DEVFSLAFSP--NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGY 281
Query: 212 --IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT 245
+ +LA+S DGQT+F+G+ D +R+W + T
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 20/222 (9%)
Query: 164 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW-----DLHKGYCVNTIIFHSN-C 217
+R TL GH V ++ S ++SA+ D+TL W D G V + HS+
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 218 NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR 277
+ DG S D LRLWD+ TG+ H + V S+ + + ++I++ R
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK-SDVMSVDIDKKASMIISGSR 127
Query: 278 DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE-------SYVAAGSADGSVYIW 330
D ++ I+ + +L + V S+ + P+E + ++AG+ D V W
Sbjct: 128 DKTIKVWTIKG-QCLATLLGHNDWV----SQVRVVPNEKADDDSVTIISAGN-DKMVKAW 181
Query: 331 SISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
++++ I H + + + + S G +ASA K+G + +W
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 140/290 (48%), Gaps = 29/290 (10%)
Query: 103 LISGGQDKSIKLW-----DTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW 157
L+S +DK++ W D G + G V D +T D ++AS L +W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 158 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC 217
DV +G GH V +VD+ K +S ++S + D+T+KVW + KG C+ T++ H++
Sbjct: 93 DVATGETYQRFVGHKSDVMSVDIDKKASM-IISGSRDKTIKVWTI-KGQCLATLLGHNDW 150
Query: 218 NALAFSM-------DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN 270
+ + D TI S D ++ W++ ++ ++ H+ + + +++ S G
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN-SNINTLTASPDGT 209
Query: 271 IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIW 330
+I ++G+D L+++ + + +L A + V S SP+ ++AA +A G + ++
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFS----LAFSPNRYWLAAATATG-IKVF 263
Query: 331 SISKADIVRTLKEHTA-------P-VLSCSWSGLGKPLASADKNGVVCVW 372
S+ +V L+ A P +S +WS G+ L + + V+ VW
Sbjct: 264 SLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 79/156 (50%), Gaps = 12/156 (7%)
Query: 99 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 158
+S +IS G DK +K W+ N + + G ++ L + D + +A + +W+
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 159 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI------- 211
+ + + +TL+ D+V ++ S +R+ ++AA +KV+ L Y V+ +
Sbjct: 225 LAAKKAMYTLSAQ-DEVFSLAFSP--NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGY 281
Query: 212 --IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT 245
+ +LA+S DGQT+F+G+ D +R+W + T
Sbjct: 282 SAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 20/222 (9%)
Query: 164 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW-----DLHKGYCVNTIIFHSN-C 217
+R TL GH V ++ S ++SA+ D+TL W D G V + HS+
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 218 NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR 277
+ DG S D LRLWD+ TG+ H + V S+ + + ++I++ R
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK-SDVMSVDIDKKASMIISGSR 127
Query: 278 DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE-------SYVAAGSADGSVYIW 330
D ++ I+ + +L + V S+ + P+E + ++AG+ D V W
Sbjct: 128 DKTIKVWTIKG-QCLATLLGHNDWV----SQVRVVPNEKADDDSVTIISAGN-DKMVKAW 181
Query: 331 SISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
++++ I H + + + + S G +ASA K+G + +W
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 140/290 (48%), Gaps = 29/290 (10%)
Query: 103 LISGGQDKSIKLW-----DTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW 157
L+S +DK++ W D G + G V D +T D ++AS L +W
Sbjct: 27 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 86
Query: 158 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC 217
DV +G GH V +VD+ K +S ++S + D+T+KVW + KG C+ T++ H++
Sbjct: 87 DVATGETYQRFVGHKSDVMSVDIDKKASM-IISGSRDKTIKVWTI-KGQCLATLLGHNDW 144
Query: 218 NALAFSM-------DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN 270
+ + D TI S D ++ W++ ++ ++ H+ + + +++ S G
Sbjct: 145 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN-SNINTLTASPDGT 203
Query: 271 IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIW 330
+I ++G+D L+++ + + +L A + V S SP+ ++AA +A G + ++
Sbjct: 204 LIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFS----LAFSPNRYWLAAATATG-IKVF 257
Query: 331 SISKADIVRTLKEHTA-------P-VLSCSWSGLGKPLASADKNGVVCVW 372
S+ +V L+ A P +S +WS G+ L + + V+ VW
Sbjct: 258 SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 307
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 79/156 (50%), Gaps = 12/156 (7%)
Query: 99 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 158
+S +IS G DK +K W+ N + + G ++ L + D + +A + +W+
Sbjct: 159 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Query: 159 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI------- 211
+ + + +TL+ D+V ++ S +R+ ++AA +KV+ L Y V+ +
Sbjct: 219 LAAKKAMYTLSAQ-DEVFSLAFSP--NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGY 275
Query: 212 --IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT 245
+ +LA+S DGQT+F+G+ D +R+W + T
Sbjct: 276 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 311
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 20/222 (9%)
Query: 164 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW-----DLHKGYCVNTIIFHSN-C 217
+R TL GH V ++ S ++SA+ D+TL W D G V + HS+
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 218 NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR 277
+ DG S D LRLWD+ TG+ H + V S+ + + ++I++ R
Sbjct: 63 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK-SDVMSVDIDKKASMIISGSR 121
Query: 278 DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE-------SYVAAGSADGSVYIW 330
D ++ I+ + +L + V S+ + P+E + ++AG+ D V W
Sbjct: 122 DKTIKVWTIKG-QCLATLLGHNDWV----SQVRVVPNEKADDDSVTIISAGN-DKMVKAW 175
Query: 331 SISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
++++ I H + + + + S G +ASA K+G + +W
Sbjct: 176 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 142/327 (43%), Gaps = 29/327 (8%)
Query: 66 EGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLI-SGGQDKSIKLW-----DTNT 119
E F + T T + + H G I +I S +DK+I +W +TN
Sbjct: 16 ENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY 75
Query: 120 GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVD 179
G L G V D+ I+ D + ++ S L +WD+ +G GHT V +V
Sbjct: 76 GIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVA 135
Query: 180 VSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-----CNALAFSMDGQTIFSGHI 234
S +R +VS + D+T+K+W+ G C T+ S+ C + + I S
Sbjct: 136 FSS-DNRQIVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW 193
Query: 235 DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGS 294
D +++W++ KL + H+ + ++++S G++ + G+D L+D+ + +
Sbjct: 194 DKLVKVWNLANCKLKTNHIGHT-GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT 252
Query: 295 LRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE---------HT 345
L G+ + + C SP+ ++ A + S+ IW + IV LK+
Sbjct: 253 LDG-GDIINA----LCFSPNRYWLCAATGP-SIKIWDLEGKIIVDELKQEVISTSSKAEP 306
Query: 346 APVLSCSWSGLGKPLASADKNGVVCVW 372
S +WS G+ L + + +V VW
Sbjct: 307 PQCTSLAWSADGQTLFAGYTDNLVRVW 333
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 17/181 (9%)
Query: 80 CKHKIN--AHEGGCASILFEYNSAR--LISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLD 135
CK+ + +H + + F NS+ ++S G DK +K+W+ L + G G +
Sbjct: 161 CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNT 220
Query: 136 LAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR 195
+ ++ D + +WD+N G+ +TL G D + A+ S +R+ + AA
Sbjct: 221 VTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSP--NRYWLCAATGP 277
Query: 196 TLKVWDLHKGYCVNTIIFH----------SNCNALAFSMDGQTIFSGHIDGNLRLWDIQT 245
++K+WDL V+ + C +LA+S DGQT+F+G+ D +R+W +
Sbjct: 278 SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337
Query: 246 G 246
G
Sbjct: 338 G 338
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 138/314 (43%), Gaps = 29/314 (9%)
Query: 79 TCKHKINAHEGGCASILFEYNSARLI-SGGQDKSIKLW-----DTNTGSLSSTLYGCLGS 132
T + + H G I +I S +DK+I +W +TN G L G
Sbjct: 6 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF 65
Query: 133 VLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAA 192
V D+ I+ D + ++ S L +WD+ +G GHT V +V S +R +VS +
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGS 124
Query: 193 YDRTLKVWDLHKGYCVNTIIFHSN-----CNALAFSMDGQTIFSGHIDGNLRLWDIQTGK 247
D+T+K+W+ G C T+ S+ C + + I S D +++W++ K
Sbjct: 125 RDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 183
Query: 248 LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS 307
L + H+ + ++++S G++ + G+D L+D+ + +L G+ + +
Sbjct: 184 LKTNHIGHT-GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINA--- 238
Query: 308 RSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE---------HTAPVLSCSWSGLGK 358
C SP+ ++ A + S+ IW + IV LK+ S +WS G+
Sbjct: 239 -LCFSPNRYWLCAATGP-SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ 296
Query: 359 PLASADKNGVVCVW 372
L + + +V VW
Sbjct: 297 TLFAGYTDNLVRVW 310
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 100/221 (45%), Gaps = 28/221 (12%)
Query: 37 YEDMI---DRLKASGLEKLAKQQVD-GVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCA 92
+ DMI R K + KL + + + G+ +R+ G F V S+ +G A
Sbjct: 27 FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS--------DGQFA 78
Query: 93 SILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN 152
+SG D +++LWD TG+ + G VL +A + DNR +++ S
Sbjct: 79 -----------LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 127
Query: 153 NLYVWDVNSGRVRHTLT--GHTDKVCAVDVSKISSRH-VVSAAYDRTLKVWDLHKGYCVN 209
+ +W+ G ++T+ H++ V V S SS +VS +D+ +KVW+L
Sbjct: 128 TIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT 186
Query: 210 TIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL 249
I H+ N + S DG SG DG LWD+ GK L
Sbjct: 187 NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 227
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 17/181 (9%)
Query: 80 CKHKIN--AHEGGCASILFEYNSAR--LISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLD 135
CK+ + +H + + F NS+ ++S G DK +K+W+ L + G G +
Sbjct: 138 CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNT 197
Query: 136 LAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR 195
+ ++ D + +WD+N G+ +TL G D + A+ S +R+ + AA
Sbjct: 198 VTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSP--NRYWLCAATGP 254
Query: 196 TLKVWDLHKGYCVNTIIFH----------SNCNALAFSMDGQTIFSGHIDGNLRLWDIQT 245
++K+WDL V+ + C +LA+S DGQT+F+G+ D +R+W +
Sbjct: 255 SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 314
Query: 246 G 246
G
Sbjct: 315 G 315
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 139/336 (41%), Gaps = 26/336 (7%)
Query: 53 AKQQVD-GVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKS 111
AKQ+VD G++ E+ + + + + + H F + R+ S G DK+
Sbjct: 590 AKQEVDNGMLY-----LEWINKKNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKT 644
Query: 112 IKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGH 171
++++ TG + VL A + D+R + S + +W+ +G + HT H
Sbjct: 645 LQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEH 704
Query: 172 TDKVCAVDVSKISSRHVVSA--AYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQT 228
+++V + SS H++ A + D LK+WDL++ C NT+ H+N N FS D +
Sbjct: 705 SEQVNCCHFTN-SSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKL 763
Query: 229 IFSGHIDGNLRLWDIQTGKLLSEVAAHSL------------AAVTSISLSRSGNIILTSG 276
+ S DG L+LWD + + V S S G I+ +
Sbjct: 764 LASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAA 823
Query: 277 RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD 336
++ + LFDI + + G + TG+ + SP + V +W+
Sbjct: 824 KNKIF-LFDIHTSGLLGEIH-TGHHSTIQYCD--FSPQNHLAVVALSQYCVELWNTDSRS 879
Query: 337 IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
V + H + V +S G ++ + + +W
Sbjct: 880 KVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLW 915
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/309 (19%), Positives = 123/309 (39%), Gaps = 29/309 (9%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 139
C++ + H F + L S D ++KLWD + + ++ L+L
Sbjct: 741 CRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSI-NVKQFFLNLEDP 799
Query: 140 HDNRSVIA-------------ASSSNNLYVWDVN-SGRVRHTLTGHTDKVCAVDVSKISS 185
++ VI ++ N ++++D++ SG + TGH + D S +
Sbjct: 800 QEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNH 859
Query: 186 RHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQ 244
VV+ + +++W+ V H S + + FS DG + + D +RLW+ +
Sbjct: 860 LAVVALS-QYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETK 918
Query: 245 TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVC-GSLRATGNRVA 303
+ +++ L + +++ + + IR L++ G
Sbjct: 919 -----------KVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTE 967
Query: 304 SNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASA 363
+ S C+SP Y+A G +G++ I + I ++ +H V ++ K L S+
Sbjct: 968 AQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISS 1027
Query: 364 DKNGVVCVW 372
+ + VW
Sbjct: 1028 SDDAEIQVW 1036
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 49/184 (26%)
Query: 100 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV 159
++RL+S D ++K+W+ TG+ G+VL I+HD + S+ +W
Sbjct: 1061 NSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSF 1120
Query: 160 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNA 219
+ H L GH CV C+
Sbjct: 1121 DLLLPLHELRGHNG---------------------------------CV-------RCS- 1139
Query: 220 LAFSMDGQTIFSGHIDGNLRLWDIQTGKLL-------SEVAAHSLAAVTSISLSRSGNII 272
AFS+D + +G +G +R+W++ G+LL E AA VT + S G ++
Sbjct: 1140 -AFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKML 1198
Query: 273 LTSG 276
+++G
Sbjct: 1199 ISAG 1202
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/245 (20%), Positives = 101/245 (41%), Gaps = 19/245 (7%)
Query: 106 GGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR 165
G ++ +I++ + + + + +V + T D +++I++S + VW+ +
Sbjct: 985 GDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI 1044
Query: 166 HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS----NCNALA 221
L GH + V D + + ++S ++D T+KVW++ G + H +C+
Sbjct: 1045 F-LRGHQETV--KDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCD--- 1098
Query: 222 FSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN-- 279
S D S D ++W L E+ H+ S + +L +G DN
Sbjct: 1099 ISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHN--GCVRCSAFSVDSTLLATGDDNGE 1156
Query: 280 --LHNLFDIRSLEVCGSLRATGNRVASNW-SRSCISPDESYVAAGSADGSVYIWSISKAD 336
+ N+ + L +C L G W + C SPD + SA G + W++ +
Sbjct: 1157 IRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLI--SAGGYIKWWNVVTGE 1214
Query: 337 IVRTL 341
+T
Sbjct: 1215 SSQTF 1219
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 119/294 (40%), Gaps = 42/294 (14%)
Query: 94 ILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNN 153
++F + + ++ D++I+LW+T +S + L +D+ + V+A
Sbjct: 894 VMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVM--LKQEVDVVFQENEVMVLAVDHIRR 951
Query: 154 LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY---DRTLKVWDLHKGYCVNT 210
L + + +G++ + C S H+ A+ + +++ +L VN
Sbjct: 952 LQLINGRTGQIDYLTEAQVSCCCL-------SPHLQYIAFGDENGAIEILEL-----VNN 999
Query: 211 IIFHSNCNA------LAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSIS 264
IF S + F+ D +T+ S D +++W+ Q K + + H V
Sbjct: 1000 RIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF-LRGHQ-ETVKDFR 1057
Query: 265 LSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR-----VASNWSRSC-ISPDESYV 318
L ++ + L+ D +++I TGN+ SC IS D +
Sbjct: 1058 LLKNSRL-LSWSFDGTVKVWNI----------ITGNKEKDFVCHQGTVLSCDISHDATKF 1106
Query: 319 AAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
++ SAD + IWS + L+ H V ++S LA+ D NG + +W
Sbjct: 1107 SSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIW 1160
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 20/100 (20%)
Query: 82 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCL----------- 130
H++ H G F +S L +G + I++W+ + G L L+ C
Sbjct: 1127 HELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGEL---LHLCAPLSEEGAATHG 1183
Query: 131 GSVLDLAITHDNRSVIAASSSNNLYV--WDVNSGRVRHTL 168
G V DL + D + +I+A Y+ W+V +G T
Sbjct: 1184 GWVTDLCFSPDGKMLISAGG----YIKWWNVVTGESSQTF 1219
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 80/204 (39%), Gaps = 39/204 (19%)
Query: 87 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVI 146
H+G S +++ + S DK+ K+W + L G G V A + D+ +
Sbjct: 1090 HQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLA 1149
Query: 147 AASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY 206
+ + +W+V++G + H +++ A H G+
Sbjct: 1150 TGDDNGEIRIWNVSNGELLHLCAPLSEEGAAT------------------------HGGW 1185
Query: 207 CVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLS 266
+ L FS DG+ + S G ++ W++ TG+ S+ + + I +S
Sbjct: 1186 VTD----------LCFSPDGKMLISA--GGYIKWWNVVTGE-SSQTFYTNGTNLKKIHVS 1232
Query: 267 RSGNIILTSGRDNLHNLFDIRSLE 290
+T DNL L+ +++LE
Sbjct: 1233 PDFKTYVTV--DNLGILYILQTLE 1254
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 11/195 (5%)
Query: 141 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
D+ ++ +S +WD+ +G+ T TGHT V ++ ++ +R VS A D + K+W
Sbjct: 164 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLW 222
Query: 201 DLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHSLA 258
D+ +G C T H S+ NA+ F +G +G D RL+D++ + L++ + +
Sbjct: 223 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 282
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC--ISPDES 316
+TS+S S+SG ++L D N++D + G L NRV SC ++ D
Sbjct: 283 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV------SCLGVTDDGM 336
Query: 317 YVAAGSADGSVYIWS 331
VA GS D + IW+
Sbjct: 337 AVATGSWDSFLKIWN 351
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/293 (20%), Positives = 109/293 (37%), Gaps = 48/293 (16%)
Query: 125 TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT--------------- 169
TL G L + + D+R +++AS L +WD + H +
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 170 -----GHTDKVCA----------VDVSK--------------ISSRHVVSAAYDRTLKVW 200
G D +C+ V VS+ + +V+++ D T +W
Sbjct: 121 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 180
Query: 201 DLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 259
D+ G T H+ + +L+ + D + SG D + +LWD++ G H +
Sbjct: 181 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE-SD 239
Query: 260 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVA 319
+ +I +GN T D LFD+R+ + + + + + + S +
Sbjct: 240 INAICFFPNGNAFATGSDDATCRLFDLRADQEL--MTYSHDNIICGITSVSFSKSGRLLL 297
Query: 320 AGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
AG D + +W KAD L H V + G +A+ + + +W
Sbjct: 298 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 4/159 (2%)
Query: 87 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVI 146
H G S+ ++ +SG D S KLWD G T G + + + +
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 147 AASSSNNLYVWDVNSGRVRHTLTGHTDKVCAV-DVSKISSRHVVSAAYDR-TLKVWDLHK 204
S ++D+ + + T + H + +C + VS S ++ A YD VWD K
Sbjct: 254 TGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 312
Query: 205 GYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWD 242
+ H N + L + DG + +G D L++W+
Sbjct: 313 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS--LSSTLYGCLGSVLDLA 137
C+ HE +I F N +G D + +L+D ++ + + + ++
Sbjct: 229 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 288
Query: 138 ITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTL 197
+ R ++A N VWD L GH ++V + V+ V + ++D L
Sbjct: 289 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFL 347
Query: 198 KVWD 201
K+W+
Sbjct: 348 KIWN 351
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 11/195 (5%)
Query: 141 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
D+ ++ +S +WD+ +G+ T TGHT V ++ ++ +R VS A D + K+W
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLW 211
Query: 201 DLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHSLA 258
D+ +G C T H S+ NA+ F +G +G D RL+D++ + L++ + +
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC--ISPDES 316
+TS+S S+SG ++L D N++D + G L NRV SC ++ D
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV------SCLGVTDDGM 325
Query: 317 YVAAGSADGSVYIWS 331
VA GS D + IW+
Sbjct: 326 AVATGSWDSFLKIWN 340
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/293 (20%), Positives = 109/293 (37%), Gaps = 48/293 (16%)
Query: 125 TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT--------------- 169
TL G L + + D+R +++AS L +WD + H +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 170 -----GHTDKVCA----------VDVSK--------------ISSRHVVSAAYDRTLKVW 200
G D +C+ V VS+ + +V+++ D T +W
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 201 DLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 259
D+ G T H+ + +L+ + D + SG D + +LWD++ G H +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE-SD 228
Query: 260 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVA 319
+ +I +GN T D LFD+R+ + + + + + + S +
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQEL--MTYSHDNIICGITSVSFSKSGRLLL 286
Query: 320 AGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
AG D + +W KAD L H V + G +A+ + + +W
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 4/159 (2%)
Query: 87 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVI 146
H G S+ ++ +SG D S KLWD G T G + + + +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 147 AASSSNNLYVWDVNSGRVRHTLTGHTDKVCAV-DVSKISSRHVVSAAYDR-TLKVWDLHK 204
S ++D+ + + T + H + +C + VS S ++ A YD VWD K
Sbjct: 243 TGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 205 GYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWD 242
+ H N + L + DG + +G D L++W+
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS--LSSTLYGCLGSVLDLA 137
C+ HE +I F N +G D + +L+D ++ + + + ++
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277
Query: 138 ITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTL 197
+ R ++A N VWD L GH ++V + V+ V + ++D L
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFL 336
Query: 198 KVWD 201
K+W+
Sbjct: 337 KIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 11/195 (5%)
Query: 141 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
D+ ++ +S +WD+ +G+ T TGHT V ++ ++ +R VS A D + K+W
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLW 211
Query: 201 DLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHSLA 258
D+ +G C T H S+ NA+ F +G +G D RL+D++ + L++ + +
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC--ISPDES 316
+TS+S S+SG ++L D N++D + G L NRV SC ++ D
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV------SCLGVTDDGM 325
Query: 317 YVAAGSADGSVYIWS 331
VA GS D + IW+
Sbjct: 326 AVATGSWDSFLKIWN 340
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/293 (20%), Positives = 109/293 (37%), Gaps = 48/293 (16%)
Query: 125 TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT--------------- 169
TL G L + + D+R +++AS L +WD + H +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 170 -----GHTDKVCA----------VDVSK--------------ISSRHVVSAAYDRTLKVW 200
G D +C+ V VS+ + +V+++ D T +W
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 201 DLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 259
D+ G T H+ + +L+ + D + SG D + +LWD++ G H +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE-SD 228
Query: 260 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVA 319
+ +I +GN T D LFD+R+ + + + + + + S +
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQEL--MTYSHDNIICGITSVSFSKSGRLLL 286
Query: 320 AGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
AG D + +W KAD L H V + G +A+ + + +W
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 4/159 (2%)
Query: 87 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVI 146
H G S+ ++ +SG D S KLWD G T G + + + +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 147 AASSSNNLYVWDVNSGRVRHTLTGHTDKVCAV-DVSKISSRHVVSAAYDR-TLKVWDLHK 204
S ++D+ + + T + H + +C + VS S ++ A YD VWD K
Sbjct: 243 TGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 205 GYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWD 242
+ H N + L + DG + +G D L++W+
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS--LSSTLYGCLGSVLDLA 137
C+ HE +I F N +G D + +L+D ++ + + + ++
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277
Query: 138 ITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTL 197
+ R ++A N VWD L GH ++V + V+ V + ++D L
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFL 336
Query: 198 KVWD 201
K+W+
Sbjct: 337 KIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 11/195 (5%)
Query: 141 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
D+ ++ +S +WD+ +G+ T TGHT V ++ ++ +R VS A D + K+W
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLW 211
Query: 201 DLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHSLA 258
D+ +G C T H S+ NA+ F +G +G D RL+D++ + L++ + +
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC--ISPDES 316
+TS+S S+SG ++L D N++D + G L NRV SC ++ D
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV------SCLGVTDDGM 325
Query: 317 YVAAGSADGSVYIWS 331
VA GS D + IW+
Sbjct: 326 AVATGSWDSFLKIWN 340
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/293 (20%), Positives = 109/293 (37%), Gaps = 48/293 (16%)
Query: 125 TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT--------------- 169
TL G L + + D+R +++AS L +WD + H +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 170 -----GHTDKVCA----------VDVSK--------------ISSRHVVSAAYDRTLKVW 200
G D +C+ V VS+ + +V+++ D T +W
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 201 DLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 259
D+ G T H+ + +L+ + D + SG D + +LWD++ G H +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE-SD 228
Query: 260 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVA 319
+ +I +GN T D LFD+R+ + + + + + + S +
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQEL--MTYSHDNIICGITSVSFSKSGRLLL 286
Query: 320 AGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
AG D + +W KAD L H V + G +A+ + + +W
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 4/159 (2%)
Query: 87 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVI 146
H G S+ ++ +SG D S KLWD G T G + + + +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 147 AASSSNNLYVWDVNSGRVRHTLTGHTDKVCAV-DVSKISSRHVVSAAYDR-TLKVWDLHK 204
S ++D+ + + T + H + +C + VS S ++ A YD VWD K
Sbjct: 243 TGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 205 GYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWD 242
+ H N + L + DG + +G D L++W+
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS--LSSTLYGCLGSVLDLA 137
C+ HE +I F N +G D + +L+D ++ + + + ++
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277
Query: 138 ITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTL 197
+ R ++A N VWD L GH ++V + V+ V + ++D L
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFL 336
Query: 198 KVWD 201
K+W+
Sbjct: 337 KIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 11/195 (5%)
Query: 141 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
D+ ++ +S +WD+ +G+ T TGHT V ++ ++ +R VS A D + K+W
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLW 211
Query: 201 DLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHSLA 258
D+ +G C T H S+ NA+ F +G +G D RL+D++ + L++ + +
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC--ISPDES 316
+TS+S S+SG ++L D N++D + G L NRV SC ++ D
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV------SCLGVTDDGM 325
Query: 317 YVAAGSADGSVYIWS 331
VA GS D + IW+
Sbjct: 326 AVATGSWDSFLKIWN 340
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/293 (20%), Positives = 109/293 (37%), Gaps = 48/293 (16%)
Query: 125 TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT--------------- 169
TL G L + + D+R +++AS L +WD + H +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 170 -----GHTDKVCA----------VDVSK--------------ISSRHVVSAAYDRTLKVW 200
G D +C+ V VS+ + +V+++ D T +W
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 201 DLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 259
D+ G T H+ + +L+ + D + SG D + +LWD++ G H +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE-SD 228
Query: 260 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVA 319
+ +I +GN T D LFD+R+ + + + + + + S +
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQEL--MTYSHDNIICGITSVSFSKSGRLLL 286
Query: 320 AGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
AG D + +W KAD L H V + G +A+ + + +W
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 4/159 (2%)
Query: 87 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVI 146
H G S+ ++ +SG D S KLWD G T G + + + +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 147 AASSSNNLYVWDVNSGRVRHTLTGHTDKVCAV-DVSKISSRHVVSAAYDR-TLKVWDLHK 204
S ++D+ + + T + H + +C + VS S ++ A YD VWD K
Sbjct: 243 TGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 205 GYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWD 242
+ H N + L + DG + +G D L++W+
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS--LSSTLYGCLGSVLDLA 137
C+ HE +I F N +G D + +L+D ++ + + + ++
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277
Query: 138 ITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTL 197
+ R ++A N VWD L GH ++V + V+ V + ++D L
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFL 336
Query: 198 KVWD 201
K+W+
Sbjct: 337 KIWN 340
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 95/201 (47%), Gaps = 13/201 (6%)
Query: 137 AITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRH-VVSAAYDR 195
+ T+ + ++ AS +WDV SG++ + GH V +D++ + + VS D+
Sbjct: 161 SFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDK 220
Query: 196 TLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA 254
VWD+ G CV H S+ N++ + G SG D RL+D++ + EVA
Sbjct: 221 KAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR---EVAI 277
Query: 255 HSLAAV----TSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC 310
+S ++ +S+ S SG ++ D N++D+ L NRV S
Sbjct: 278 YSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRV----STLR 333
Query: 311 ISPDESYVAAGSADGSVYIWS 331
+SPD + +GS D ++ +W+
Sbjct: 334 VSPDGTAFCSGSWDHTLRVWA 354
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 11/206 (5%)
Query: 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVL--DLAI 138
K + H ++ F + ++++ D + LWD +G L + +G VL DLA
Sbjct: 147 KKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 206
Query: 139 THDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLK 198
+ + ++ VWD+ SG+ H V +V S S + D T +
Sbjct: 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP-SGDAFASGSDDATCR 265
Query: 199 VWDLHKG-----YCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA 253
++DL Y +IIF + +++ FS+ G+ +F+G+ D + +WD+ G +S +
Sbjct: 266 LYDLRADREVAIYSKESIIFGA--SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF 323
Query: 254 AHSLAAVTSISLSRSGNIILTSGRDN 279
H V+++ +S G + D+
Sbjct: 324 GHE-NRVSTLRVSPDGTAFCSGSWDH 348
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 17/176 (9%)
Query: 125 TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT---------GHTDKV 175
TL G VL + D R ++++S + VWD + H +T +
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG 118
Query: 176 CAVDVSKISSR-HVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGH 233
CA+ + ++ V +D+ + K ++ H+N +A +F+ I +
Sbjct: 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKK-----SVAMHTNYLSACSFTNSDMQILTAS 173
Query: 234 IDGNLRLWDIQTGKLLSEVAAHSLAAVT-SISLSRSGNIILTSGRDNLHNLFDIRS 288
DG LWD+++G+LL H + ++ S +GN ++ G D ++D+RS
Sbjct: 174 GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 90 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS 149
G +S+ F + L +G D +I +WD GS S L+G V L ++ D + + S
Sbjct: 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGS 345
Query: 150 SSNNLYVW 157
+ L VW
Sbjct: 346 WDHTLRVW 353
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 7/129 (5%)
Query: 225 DGQTIFSGHIDGNLRLWD-IQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL 283
D + I S DG + +WD T K V + + + SG I G DN ++
Sbjct: 75 DKRRIVSSSQDGKVIVWDSFTTNK--EHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 132
Query: 284 FDIRSLEVCGSLRATGNRVA--SNWSRSC-ISPDESYVAAGSADGSVYIWSISKADIVRT 340
+ + + + ++ A VA +N+ +C + + + S DG+ +W + ++++
Sbjct: 133 YPL-TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQS 191
Query: 341 LKEHTAPVL 349
H A VL
Sbjct: 192 FHGHGADVL 200
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 101/221 (45%), Gaps = 28/221 (12%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 143
+ HE S+ + + +L+SG D+++++WD TG S TL V +A++ +
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-SIEDGVTTVAVSPGDG 219
Query: 144 SVIAASSSNN-LYVWDVNSGRVRHTL-------TGHTDKVCAVDVSKISSRHVVSAAYDR 195
IAA S + + VWD +G + L TGH D V +V ++ + VVS + DR
Sbjct: 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDR 278
Query: 196 TLKVWDLHK------------GYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWD 242
++K+W+L G C T I H + ++A + + + I SG D + WD
Sbjct: 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338
Query: 243 IQTGKLLSEVAAH-----SLAAVTSISLSRSGNIILTSGRD 278
++G L + H S+A SL N+ T D
Sbjct: 339 KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 379
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 111/249 (44%), Gaps = 21/249 (8%)
Query: 119 TGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAV 178
+ S SS LY + + + D + + + + +WD+ + ++ L GH + ++
Sbjct: 117 SSSPSSDLY-----IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 171
Query: 179 DVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSM-DGQTIFSGHIDGN 237
D S +VS + DRT+++WDL G C T+ +A S DG+ I +G +D
Sbjct: 172 DYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA 230
Query: 238 LRLWDIQTGKLLSEVAAHSLA------AVTSISLSRSGNIILTSGRDNLHNLFDIRS--- 288
+R+WD +TG L+ + + + + +V S+ +R G +++ D L+++++
Sbjct: 231 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 290
Query: 289 -----LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE 343
G+ T + ++ Y+ +GS D V W + + L+
Sbjct: 291 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG 350
Query: 344 HTAPVLSCS 352
H V+S +
Sbjct: 351 HRNSVISVA 359
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 28/181 (15%)
Query: 88 EGGCASILFEYNSARLISGGQ-DKSIKLWDTNTGSLSSTL-------YGCLGSVLDLAIT 139
E G ++ + I+ G D+++++WD+ TG L L G SV + T
Sbjct: 206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 265
Query: 140 HDNRSVIAASSSNNLYVWDV------------NSGRVRHTLTGHTDKVCAVDVSKISSRH 187
D +SV++ S ++ +W++ NSG T GH D V +V ++ + +
Sbjct: 266 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEY 324
Query: 188 VVSAAYDRTLKVWDLHKGYCV-------NTIIFHSNCNALAFSMDGQTIFSGHIDGNLRL 240
++S + DR + WD G + N++I + N + + +G D R+
Sbjct: 325 ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 384
Query: 241 W 241
W
Sbjct: 385 W 385
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 14/162 (8%)
Query: 219 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 278
++ FS DG+ + +G D +R+WDI+ K++ + H + S+ SG+ +++ D
Sbjct: 128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE-QDIYSLDYFPSGDKLVSGSGD 186
Query: 279 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP-DESYVAAGSADGSVYIWSISKADI 337
++D+R+ + +L + + +SP D Y+AAGS D +V +W +
Sbjct: 187 RTVRIWDLRTGQCSLTL-----SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 241
Query: 338 VRTLKE-------HTAPVLSCSWSGLGKPLASADKNGVVCVW 372
V L H V S ++ G+ + S + V +W
Sbjct: 242 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 28 ERLNEANALYEDMIDRLKASGLEKLAKQQVDGVVRRSE-----EGAEFFAESTVPS--TC 80
ERL+ N D + + + + V G + RS + A ++S P+ TC
Sbjct: 243 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 302
Query: 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 140
+ H+ S+ N ++SG +D+ + WD +G+ L G SV+ +A+ +
Sbjct: 303 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 32/234 (13%)
Query: 80 CKHKINAHEGG--CASILFEYNSARLISGGQDKSIKLWDTNTGS---------------- 121
C H H C I+ N +++G +D ++ +W S
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254
Query: 122 -------LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDK 174
L G + SV ++ H N V++ S N L VWDV + + L+GHTD+
Sbjct: 255 TPEENPYFVGVLRGHMASVRTVS-GHGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDR 312
Query: 175 VCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI 234
+ + + + +SA+ D T+++WDL G + T+ H+ L + + + S
Sbjct: 313 IYST-IYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGL-LRLSDKFLVSAAA 370
Query: 235 DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS 288
DG++R WD +L+A+T+ +S + IL SG +N N++++RS
Sbjct: 371 DGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN---ILVSGSENQFNIYNLRS 421
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 139/336 (41%), Gaps = 52/336 (15%)
Query: 42 DRLKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSA 101
DRL+ S LE + + ++ +F + T + H + L ++
Sbjct: 89 DRLRLSFLENI-------FILKNWYNPKFVPQRTT-------LRGHMTSVITCL-QFEDN 133
Query: 102 RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 161
+I+G DK I+++D+ L G G V L H +++ S+ + VWD+
Sbjct: 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK 192
Query: 162 GRVRHTLTGHTDKVCAVDVSKISS-RHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNAL 220
G H GH V +D+ + + +++V+ + D TL VW L K V + +
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 221 AFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL 280
+ + F G + G+ +A+V ++ S GNI+++ DN
Sbjct: 253 FHTPEENPYFVGVLRGH-------------------MASVRTV--SGHGNIVVSGSYDNT 291
Query: 281 HNLFDIRSLEVCGSLRATGNRVAS----NWSRSCISPDESYVAAGSADGSVYIWSISKAD 336
++D+ ++ L +R+ S + + CIS S D ++ IW + +
Sbjct: 292 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS--------ASMDTTIRIWDLENGE 343
Query: 337 IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
++ TL+ HTA V S K L SA +G + W
Sbjct: 344 LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGW 377
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 75/148 (50%), Gaps = 6/148 (4%)
Query: 103 LISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG 162
++SG D ++ +WD L G + H+ + I+AS + +WD+ +G
Sbjct: 283 VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG 342
Query: 163 RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNAL-A 221
+ +TL GHT V + ++S + +VSAA D +++ WD + Y H+N +A+
Sbjct: 343 ELMYTLQGHT---ALVGLLRLSDKFLVSAAADGSIRGWDAND-YSRKFSYHHTNLSAITT 398
Query: 222 FSMDGQTIFSGHIDGNLRLWDIQTGKLL 249
F + + SG + ++++++GKL+
Sbjct: 399 FYVSDNILVSGS-ENQFNIYNLRSGKLV 425
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 134/305 (43%), Gaps = 43/305 (14%)
Query: 99 NSARLISGGQDKSIKLW-------DTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS 151
+S LISG +DK++ +W + G L G V DLA++ +N I++S
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 152 NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI 211
L +WD+ +G GH +V +V S +R ++SA +R +K+W++ G C +
Sbjct: 98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNI-LGECKFSS 155
Query: 212 IFHSN---------CNALAFSMDGQTIFSGHI-----DGNLRLWDIQTGKLLSEVAAHSL 257
N + + S + F+ + DG L++W+ ++ AH
Sbjct: 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTFKAHE- 213
Query: 258 AAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY 317
+ V +S+S +G I T G+D ++DI +L G+ + ++ +P +
Sbjct: 214 SNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTI----NQIAFNPKLQW 269
Query: 318 VAAGSADGSVYIWSI---SKADI----------VRTLKEHTAPVLSCSWSGLGKPLASAD 364
VA G+ G V I+++ SKA + K S +W+ LGK L +
Sbjct: 270 VAVGTDQG-VKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF 328
Query: 365 KNGVV 369
+GV+
Sbjct: 329 TDGVI 333
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 102/233 (43%), Gaps = 31/233 (13%)
Query: 165 RHTLTGHTDKVCAVDVSKISSRH------VVSAAYDRTLKVWDLHK-------GYCVNTI 211
R L GH+D V ++ V+ S + ++S + D+T+ +W L++ G +
Sbjct: 14 RGILEGHSDWVTSI-VAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL 72
Query: 212 IFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN 270
H++ + LA S + S D LRLWD++TG H + V S++ S
Sbjct: 73 TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQ-SEVYSVAFSPDNR 131
Query: 271 IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNW-----------SRSCISPDESYVA 319
IL++G + L++I L C + S+W S + + P Y A
Sbjct: 132 QILSAGAEREIKLWNI--LGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA 188
Query: 320 AGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
+ DG + +W+ + I T K H + V S S GK +A+ K+ + +W
Sbjct: 189 SVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 64/165 (38%), Gaps = 30/165 (18%)
Query: 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 140
++ AHE + N + +GG+DK + +WD L +T+
Sbjct: 206 RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI------------------LNLTY 247
Query: 141 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
R A S+ N + + +++ G V ++ S V + + K
Sbjct: 248 PQREFDAGSTINQIAF----NPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKA- 302
Query: 201 DLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT 245
+ KG + C +LA++ G+ +F+G DG +R + +T
Sbjct: 303 EGQKGK-------NPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 126/295 (42%), Gaps = 22/295 (7%)
Query: 60 VVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT 119
+V S++G + + S H I H F N + GG D + +++ ++
Sbjct: 81 IVSASQDG-RLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSS 139
Query: 120 GS-------LSSTLYGCLGSVLDLAITHDNRS-VIAASSSNNLYVWDVNSGRVRHTL--- 168
+ +S L G G D + +I S +WDV +G+
Sbjct: 140 QADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE 199
Query: 169 --TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH-KGYCVNTIIFHS-NCNALAFSM 224
+GHT V ++ ++ +++ +S + D T+++WDL V T H + N++ F
Sbjct: 200 FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP 259
Query: 225 DGQTIFSGHIDGNLRLWDIQTGKLL------SEVAAHSLAAVTSISLSRSGNIILTSGRD 278
DGQ +G DG RL+D++TG L + + L VTS++ S SG ++ +
Sbjct: 260 DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN 319
Query: 279 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS 333
++D E+ +L N S +S D S + GS D ++ IW+ S
Sbjct: 320 GDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 284 FDIRSLEVCGSLRATGNRVAS-NWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLK 342
F+ L C +L+ +V S +W+ P+++++ + S DG + +W+ + +K
Sbjct: 51 FNPTDLVCCRTLQGHSGKVYSLDWT-----PEKNWIVSASQDGRLIVWNALTSQKTHAIK 105
Query: 343 EHTAPVLSCSWSGLGKPLA 361
H V+ C+++ G+ +A
Sbjct: 106 LHCPWVMECAFAPNGQSVA 124
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 105/232 (45%), Gaps = 10/232 (4%)
Query: 103 LISGGQDKSIKLWD--TNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN 160
LI GG+ ++ +WD T + + L + LAI+ D++ + S N+ VWD++
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171
Query: 161 SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNAL 220
+ + GHTD +D+S ++ + + D T++ WDL +G + F S +L
Sbjct: 172 NQTLVRQFQGHTDGASCIDISNDGTK-LWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSL 230
Query: 221 AFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL 280
+ G+ + G N+ + + ++ H + V S+ + G +++G+DNL
Sbjct: 231 GYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHE-SCVLSLKFAYCGKWFVSTGKDNL 288
Query: 281 HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI 332
N + + + + ++ + IS D+ Y+ GS D ++ +
Sbjct: 289 LNAWRTPYGASIFQSKESSSVLSCD-----ISVDDKYIVTGSGDKKATVYEV 335
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 68/186 (36%), Gaps = 63/186 (33%)
Query: 171 HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL-HKGY--------CVNTIIFHSNCNALA 221
H + VCAV +S +RHV + +KVWD+ H G C+N + +C L
Sbjct: 50 HGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 222 FSMDGQTIFSGHIDGNLRLWDI--QTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN 279
DG T+ G L +WD+ T ++ +E+ +
Sbjct: 108 ---DGCTLIVGGEASTLSIWDLAAPTPRIKAELTS------------------------- 139
Query: 280 LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVR 339
S C +L ISPD + +DG++ +W + +VR
Sbjct: 140 --------SAPACYALA--------------ISPDSKVCFSCCSDGNIAVWDLHNQTLVR 177
Query: 340 TLKEHT 345
+ HT
Sbjct: 178 QFQGHT 183
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 75/144 (52%), Gaps = 5/144 (3%)
Query: 145 VIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 204
V++ S N L VWDV + + L+GHTD++ + + + +SA+ D T+++WDL
Sbjct: 283 VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYST-IYDHERKRCISASXDTTIRIWDLEN 341
Query: 205 GYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSIS 264
G T+ H+ L + + + S DG++R WD +L+A+T+
Sbjct: 342 GELXYTLQGHTALVGL-LRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFY 400
Query: 265 LSRSGNIILTSGRDNLHNLFDIRS 288
+S + IL SG +N N++++RS
Sbjct: 401 VSDN---ILVSGSENQFNIYNLRS 421
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 136/336 (40%), Gaps = 52/336 (15%)
Query: 42 DRLKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSA 101
DRL+ S LE + + ++ +F + T + H + L ++
Sbjct: 89 DRLRLSFLENI-------FILKNWYNPKFVPQRTT-------LRGHXTSVITCL-QFEDN 133
Query: 102 RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 161
+I+G DK I+++D+ L G G V L H +++ S+ + VWD+
Sbjct: 134 YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK 192
Query: 162 GRVRHTLTGHTDKVCAVDVSKISS-RHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNAL 220
G H GH V +D+ + + +++V+ + D TL VW L K V + +
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 221 AFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL 280
+ + F G + G+ A+V ++S GNI+++ DN
Sbjct: 253 FHTPEENPYFVGVLRGHX-------------------ASVRTVS--GHGNIVVSGSYDNT 291
Query: 281 HNLFDIRSLEVCGSLRATGNRVAS----NWSRSCISPDESYVAAGSADGSVYIWSISKAD 336
++D+ + L +R+ S + + CIS S D ++ IW + +
Sbjct: 292 LIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCIS--------ASXDTTIRIWDLENGE 343
Query: 337 IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
+ TL+ HTA V S K L SA +G + W
Sbjct: 344 LXYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGW 377
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 75/148 (50%), Gaps = 6/148 (4%)
Query: 103 LISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG 162
++SG D ++ +WD L G + H+ + I+AS + +WD+ +G
Sbjct: 283 VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENG 342
Query: 163 RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNAL-A 221
+ +TL GHT V + ++S + +VSAA D +++ WD + Y H+N +A+
Sbjct: 343 ELXYTLQGHT---ALVGLLRLSDKFLVSAAADGSIRGWDAND-YSRKFSYHHTNLSAITT 398
Query: 222 FSMDGQTIFSGHIDGNLRLWDIQTGKLL 249
F + + SG + ++++++GKL+
Sbjct: 399 FYVSDNILVSGS-ENQFNIYNLRSGKLV 425
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 132/274 (48%), Gaps = 23/274 (8%)
Query: 99 NSARLISGGQDKSIKLWDTNTG--SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV 156
NS +++G D +K+W L +L G V+ + I+H IAASSS + ++
Sbjct: 47 NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH--TLPIAASSSLDAHI 104
Query: 157 --WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG---YCVNT- 210
WD+ +G+ ++ + S S+++ + + + ++ + G Y ++T
Sbjct: 105 RLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTR 163
Query: 211 --IIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS 268
I ++A+S DG+ + SG IDG + ++DI TGKLL + H++ + S++ S
Sbjct: 164 GKFIL-----SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP-IRSLTFSPD 217
Query: 269 GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVY 328
+++T+ D ++D++ + G+L + V + PD+++ + S+D SV
Sbjct: 218 SQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLN----VAFCPDDTHFVSSSSDKSVK 273
Query: 329 IWSISKADIVRTLKEHTAPVLSCSWSGLGKPLAS 362
+W + V T +H V ++G G + S
Sbjct: 274 VWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVS 307
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 108/241 (44%), Gaps = 32/241 (13%)
Query: 149 SSSNNLYVWDVNS-GRVRHTLTGHTDKVCAV---DVSKISSRHVVSAAYDRTLKVW---- 200
SS NLY N G + H D + +V K +S VV+ + D +KVW
Sbjct: 8 SSRENLYFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD 67
Query: 201 ---DL------HKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE 251
DL H+ V+ I H+ A + S+D ++RLWD++ GK +
Sbjct: 68 ERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA----------HIRLWDLENGKQIKS 117
Query: 252 VAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI 311
+ A + A T ++ S + T N+F + S + SL G + S
Sbjct: 118 IDAGPVDAWT-LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILS----IAY 172
Query: 312 SPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV 371
SPD Y+A+G+ DG + I+ I+ ++ TL+ H P+ S ++S + L +A +G + +
Sbjct: 173 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 232
Query: 372 W 372
+
Sbjct: 233 Y 233
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 82 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHD 141
H + H S+ F +S L++ D IK++D +L+ TL G VL++A D
Sbjct: 200 HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 259
Query: 142 NRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD 201
+ +++SS ++ VWDV + HT H D+V V + S+ +VS D+ + ++D
Sbjct: 260 DTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSK-IVSVGDDQEIHIYD 318
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 2/151 (1%)
Query: 93 SILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN 152
SI + + L SG D I ++D TG L TL G + L + D++ ++ AS
Sbjct: 169 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 228
Query: 153 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII 212
+ ++DV + TL+GH V V H VS++ D+++KVWD+ CV+T
Sbjct: 229 YIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFF 287
Query: 213 FHSN-CNALAFSMDGQTIFSGHIDGNLRLWD 242
H + + ++ +G I S D + ++D
Sbjct: 288 DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 5/170 (2%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWD-TNTGSLSSTLYGCLGSVLDLAITHDN 142
AH SI ++SG D ++KLW+ N +L T G V+ +A +
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 143 RSVIAASS-SNNLYVWDVNSGRVRHTLT-GHTDKVCAVDVSKISSR-HVVSAAYDRTLKV 199
S A+ + VW + TLT G V VD + + ++++A+ D T+K+
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 200 WDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL 248
WD CV T+ H SN + F I SG DG L++W+ T K+
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 87/203 (42%), Gaps = 12/203 (5%)
Query: 145 VIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 204
+I S + V++ N+G H D + ++ V + +V+S + D T+K+W+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWEN 128
Query: 205 GYCV-NTIIFHSN-CNALAFSM-DGQTIFSGHIDGNLRLWDI---QTGKLLSEVAAHSLA 258
+ + T H + +AF+ D T SG +D +++W + L+ +
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 318
V L +I T+ D ++D ++ +L SN S + P +
Sbjct: 189 YVDYYPLPDKPYMI-TASDDLTIKIWDYQTKSCVATLEGH----MSNVSFAVFHPTLPII 243
Query: 319 AAGSADGSVYIWSISKADIVRTL 341
+GS DG++ IW+ S + +TL
Sbjct: 244 ISGSEDGTLKIWNSSTYKVEKTL 266
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 99 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN-NLYVW 157
+ +I+ D +IK+WD T S +TL G + +V A+ H +I + S + L +W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV-SFAVFHPTLPIIISGSEDGTLKIW 255
Query: 158 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 199
+ ++ +V TL ++ + ++ +++ +D V
Sbjct: 256 NSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 79 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL 126
+C + H + +F +ISG +D ++K+W+++T + TL
Sbjct: 219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 5/170 (2%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWD-TNTGSLSSTLYGCLGSVLDLAITHDN 142
AH SI ++SG D ++KLW+ N +L T G V+ +A +
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 143 RSVIAASS-SNNLYVWDVNSGRVRHTLT-GHTDKVCAVDVSKISSR-HVVSAAYDRTLKV 199
S A+ + VW + TLT G V VD + + ++++A+ D T+K+
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 200 WDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL 248
WD CV T+ H SN + F I SG DG L++W+ T K+
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 87/203 (42%), Gaps = 12/203 (5%)
Query: 145 VIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 204
+I S + V++ N+G H D + ++ V + +V+S + D T+K+W+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWEN 128
Query: 205 GYCV-NTIIFHSN-CNALAFSM-DGQTIFSGHIDGNLRLWDI---QTGKLLSEVAAHSLA 258
+ + T H + +AF+ D T SG +D +++W + L+ +
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 318
V L +I T+ D ++D ++ +L SN S + P +
Sbjct: 189 YVDYYPLPDKPYMI-TASDDLTIKIWDYQTKSCVATLEGH----MSNVSFAVFHPTLPII 243
Query: 319 AAGSADGSVYIWSISKADIVRTL 341
+GS DG++ IW+ S + +TL
Sbjct: 244 ISGSEDGTLKIWNSSTYKVEKTL 266
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 99 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN-NLYVW 157
+ +I+ D +IK+WD T S +TL G + +V A+ H +I + S + L +W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV-SFAVFHPTLPIIISGSEDGTLKIW 255
Query: 158 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 199
+ ++ +V TL ++ + ++ +++ +D V
Sbjct: 256 NSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 79 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL 126
+C + H + +F +ISG +D ++K+W+++T + TL
Sbjct: 219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 5/170 (2%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWD-TNTGSLSSTLYGCLGSVLDLAITHDN 142
AH SI ++SG D ++KLW+ N +L T G V+ +A +
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 143 RSVIAASS-SNNLYVWDVNSGRVRHTLT-GHTDKVCAVDVSKISSR-HVVSAAYDRTLKV 199
S A+ + VW + TLT G V VD + + ++++A+ D T+K+
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 200 WDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL 248
WD CV T+ H SN + F I SG DG L++W+ T K+
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 88/231 (38%), Gaps = 48/231 (20%)
Query: 145 VIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 204
+I S + V++ N+G H D + ++ V + +V+S + D T+K+W+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWEN 128
Query: 205 GYCV-NTIIFHSN-CNALAFS-MDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVT 261
+ + T H + +AF+ D T SG +D +++W SL T
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW--------------SLGQST 174
Query: 262 SISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG 321
N LT+G++ N D L PD+ Y+
Sbjct: 175 P-------NFTLTTGQERGVNYVDYYPL-----------------------PDKPYMITA 204
Query: 322 SADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
S D ++ IW V TL+ H + V + + S ++G + +W
Sbjct: 205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 99 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN-NLYVW 157
+ +I+ D +IK+WD T S +TL G + +V A+ H +I + S + L +W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV-SFAVFHPTLPIIISGSEDGTLKIW 255
Query: 158 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL 202
+ ++ +V TL ++ + ++ +++ +D V L
Sbjct: 256 NSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 79 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL 126
+C + H + +F +ISG +D ++K+W+++T + TL
Sbjct: 219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 5/170 (2%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWD-TNTGSLSSTLYGCLGSVLDLAITHDN 142
AH SI ++SG D ++KLW+ N +L T G V+ +A +
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 143 RSVIAASS-SNNLYVWDVNSGRVRHTLT-GHTDKVCAVDVSKISSR-HVVSAAYDRTLKV 199
S A+ + VW + TLT G V VD + + ++++A+ D T+K+
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 200 WDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL 248
WD CV T+ H SN + F I SG DG L++W+ T K+
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 88/231 (38%), Gaps = 48/231 (20%)
Query: 145 VIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 204
+I S + V++ N+G H D + ++ V + +V+S + D T+K+W+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWEN 128
Query: 205 GYCV-NTIIFHSN-CNALAFSM-DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVT 261
+ + T H + +AF+ D T SG +D +++W SL T
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW--------------SLGQST 174
Query: 262 SISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG 321
N LT+G++ N D L PD+ Y+
Sbjct: 175 P-------NFTLTTGQERGVNYVDYYPL-----------------------PDKPYMITA 204
Query: 322 SADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
S D ++ IW V TL+ H + V + + S ++G + +W
Sbjct: 205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 99 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN-NLYVW 157
+ +I+ D +IK+WD T S +TL G + +V A+ H +I + S + L +W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV-SFAVFHPTLPIIISGSEDGTLKIW 255
Query: 158 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL 202
+ ++ +V TL ++ + ++ +++ +D V L
Sbjct: 256 NSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 79 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL 126
+C + H + +F +ISG +D ++K+W+++T + TL
Sbjct: 219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 152/351 (43%), Gaps = 64/351 (18%)
Query: 77 PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWD----TNTG-----SLSSTLY 127
P K H S+ + + + S G D +I L++ T TG SL + +
Sbjct: 179 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 238
Query: 128 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHT---DKVCAVDVSKIS 184
GSV L + D + +AS+ + +W+V + +V T+ T D+ + +K
Sbjct: 239 S--GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK-- 294
Query: 185 SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWD 242
+ +VS + + + + G ++ + + N AL+ S DG+T+FS +G++ WD
Sbjct: 295 -QALVSISANGFINFVNPELG-SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWD 352
Query: 243 IQTG---KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF--------------D 285
I TG ++ +V A +T I + G++ S D+L +
Sbjct: 353 ISTGISNRVFPDVHA---TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANK 409
Query: 286 IRSLEVCGSLRATGN-------------------RVASNWSRSCI--SPDESYVAAGSAD 324
+ S + ++ A G+ V +++ SC+ S D+ +VA G D
Sbjct: 410 LSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQD 469
Query: 325 GSVYIWSISKADI--VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373
V+++ +S A + V+T+ H A + S ++S G L + D++ V ++
Sbjct: 470 SKVHVYKLSGASVSEVKTI-VHPAEITSVAFSNNGAFLVATDQSRKVIPYS 519
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 122/285 (42%), Gaps = 26/285 (9%)
Query: 105 SGGQDKSIKLWDTN--TGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLY--VWDVN 160
SG ++++WDT T L +T+ G V D++ +++ + A + V+ +
Sbjct: 76 SGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 135
Query: 161 SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNA 219
+G LTG + +VD ++S + D T+ +++ +T H+ ++
Sbjct: 136 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS 195
Query: 220 LAFSMDGQTIFSGHIDGNLRLWD----IQTGKLLSEV---AAHSLAAVTSISLSRSGNII 272
+ ++ DG S DG + L++ +TG + AHS +V ++ S G I
Sbjct: 196 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS-GSVFGLTWSPDGTKI 254
Query: 273 LTSGRDNLHNLFDIRSLEVCGSLRATGNRVASN-----WSRSCISPDESYVAAGSADGSV 327
++ D ++++ +L+V ++ G R+ W++ + + SA+G +
Sbjct: 255 ASASADKTIKIWNVATLKVEKTI-PVGTRIEDQQLGIIWTKQAL-------VSISANGFI 306
Query: 328 YIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
+ I + H + + S S GK L SAD G + W
Sbjct: 307 NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW 351
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 11/181 (6%)
Query: 199 VWDLHKGYCVNTIIF--HSNCNALA-FSMDGQTIFSGHIDGNLRLWD-IQTGKLLSEVAA 254
V+ + G +T I+ HS+ +A S G SG + GN+R+WD QT +L
Sbjct: 41 VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP 100
Query: 255 HSLAAVTSISLSRSGNII--LTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS 312
V IS I + GR+ ++F + G+L TG A N
Sbjct: 101 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL--TGQARAMN--SVDFK 156
Query: 313 PDESY-VAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV 371
P + + +GS D +V I+ T EHT V S ++ G AS +G + +
Sbjct: 157 PSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL 216
Query: 372 W 372
+
Sbjct: 217 Y 217
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 54/279 (19%), Positives = 110/279 (39%), Gaps = 53/279 (18%)
Query: 103 LISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG 162
L+S + I + GS+ YG ++ L+ + D +++ +A + ++ WD+++G
Sbjct: 297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356
Query: 163 RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV----------------------- 199
+ + + + S + + ++D LKV
Sbjct: 357 -ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL 415
Query: 200 -------WDLHKGYCVNTIIFHS-----------NCNALAFSMDGQTIFSGHIDGNLRLW 241
D+ C I +S N + +A S D Q + G D + ++
Sbjct: 416 GLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY 475
Query: 242 DIQTGKLLSEVAA--HSLAAVTSISLSRSGNIILTSGRDNLHNLFDI-RSLEVCGSLRAT 298
+ +G +SEV H A +TS++ S +G ++ + + + + + E L T
Sbjct: 476 KL-SGASVSEVKTIVHP-AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE----LAHT 529
Query: 299 GNRVASNWSRSCIS--PDESYVAAGSADGSVYIWSISKA 335
+ +C+S PD +A GS D SV +W+++K
Sbjct: 530 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 32/222 (14%)
Query: 86 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSV 145
AH + F + LIS QD +K+W GS TL G +V D+AI R+V
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 146 IAASSSNNLYVWDVNSGRVRHTLTGHTDK-----VCAVDVSKISSRHVVSAAYDRTLKVW 200
++AS + +W+ +G HT + A+ V H +S + L+
Sbjct: 194 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 253
Query: 201 DLHK----GYCVNTIIFHS----------------NCNALAFSMDGQT---IFSGHIDGN 237
K G+ I H+ +CN+L ++DG I++G+ +G
Sbjct: 254 TYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL--TVDGNNANYIYAGYENGM 311
Query: 238 LRLWDIQTGK-LLSEVAAHSLAAVTSISLSRSGNIILTSGRD 278
L WD+++ + + E + + ++ + +G + ++SG D
Sbjct: 312 LAQWDLRSPECPVGEFLINEGTPINNVYFA-AGALFVSSGFD 352
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 16/157 (10%)
Query: 221 AFSMDGQTIFSGHIDGNLRLWD--IQTGKLLSEVAAHSLAAVTSISLSRSGNIIL--TSG 276
F G ++ +DG+ L++ I+ G + + A ++ + + R IL T G
Sbjct: 60 TFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRR---FILGTTEG 116
Query: 277 RDNLHNLFDIRSLEVCGSL-RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA 335
DI+ L+ +L R S ++ P + + S D + IWS+
Sbjct: 117 --------DIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG 168
Query: 336 DIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
RTL H A V + G+ + SA +G + +W
Sbjct: 169 SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 32/222 (14%)
Query: 86 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSV 145
AH + F + LIS QD +K+W GS TL G +V D+AI R+V
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 146 IAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVD-----VSKISSRHVVSAAYDRTLKVW 200
++AS + +W+ +G HT + V+ V H +S + L+
Sbjct: 197 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 256
Query: 201 DLHK----GYCVNTIIFHS----------------NCNALAFSMDGQT---IFSGHIDGN 237
K G+ I H+ +CN+L ++DG I++G+ +G
Sbjct: 257 TYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL--TVDGNNANYIYAGYENGM 314
Query: 238 LRLWDIQTGK-LLSEVAAHSLAAVTSISLSRSGNIILTSGRD 278
L WD+++ + + E + + ++ + +G + ++SG D
Sbjct: 315 LAQWDLRSPECPVGEFLINEGTPINNVYFA-AGALFVSSGFD 355
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 16/156 (10%)
Query: 222 FSMDGQTIFSGHIDGNLRLWD--IQTGKLLSEVAAHSLAAVTSISLSRSGNIIL--TSGR 277
F G ++ +DG+ L++ I+ G + + A ++ + + R IL T G
Sbjct: 64 FEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRR---FILGTTEG- 119
Query: 278 DNLHNLFDIRSLEVCGSL-RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD 336
DI+ L+ +L R S ++ P + + S D + IWS+
Sbjct: 120 -------DIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS 172
Query: 337 IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
RTL H A V + G+ + SA +G + +W
Sbjct: 173 NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 123/289 (42%), Gaps = 26/289 (8%)
Query: 51 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDK 110
K+A DG VR + ++ TV T + +N S+ ++ L+ GG+D
Sbjct: 31 KVASVSRDGTVRLWSKDDQWLG--TVVYTGQGFLN-------SVCYDSEKELLLFGGKDT 81
Query: 111 SI---KLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT 167
I L+ T+ TL G G+V L+ + VI+ S VW G + +
Sbjct: 82 XINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DGVVISGSWDKTAKVW--KEGSLVYN 137
Query: 168 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQ 227
L H V V S ++A+ D+T+K+W K + I + LA DG
Sbjct: 138 LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH 197
Query: 228 TIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR 287
I S DG ++L D TG +L H + V I L +G+I+ + G D ++
Sbjct: 198 FI-SCSNDGLIKLVDXHTGDVLRTYEGHE-SFVYCIKLLPNGDIV-SCGEDRTVRIWSKE 254
Query: 288 SLEVCGSLRATGNRVA-SNWSRSCISPDESYVAAGSADGSVYIWSISKA 335
+ GSL+ A S WS C S + + GS+D V I+S K+
Sbjct: 255 N----GSLKQVITLPAISIWSVDCXSNGD--IIVGSSDNLVRIFSQEKS 297
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 27/175 (15%)
Query: 96 FEYNSARLISGGQDKSIKLWDTNT------GSLSSTLYGCLGSVLDLAITHDNRSVIAAS 149
+ +++ S DK++K+WDTNT + T+Y S ++ + V +
Sbjct: 108 YPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMS----PVSTKHCLVAVGT 163
Query: 150 SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-CV 208
+ + D+ SG H L GH ++ AV S + +A+ D +K+WD+ + C+
Sbjct: 164 RGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCL 223
Query: 209 NTIIFHS----------------NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK 247
T+ H+ N L F+ DG + + D +RLW+ G+
Sbjct: 224 ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 129/331 (38%), Gaps = 56/331 (16%)
Query: 87 HEGGCASILFEYNSAR-LISGGQDKSIKLWDTNTGSLSSTLYGCLG-------------- 131
H GG ++ E R ++SGG D I L+D S S Y C
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS-YYTCKAVCSIGRDHPDVHRY 100
Query: 132 SVLDLA-ITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVS 190
SV + HD ++S L VWD N+ + + V + +S +S++H +
Sbjct: 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLV 159
Query: 191 AAYDRTLKVW--DLHKGYCVNTIIFHSNCNALAFSMDGQTIF---SGHIDGNLRLWDIQ- 244
A R KV DL G C + + H LA S + + + D ++LWD++
Sbjct: 160 AVGTRGPKVQLCDLKSGSCSHILQGHRQ-EILAVSWSPRYDYILATASADSRVKLWDVRR 218
Query: 245 -----------TGKLLSEVAAHSLA---AVTSISLSRSGNIILTSGRDNLHNLFD----- 285
GK V + + A V + + G +LT G DN L++
Sbjct: 219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278
Query: 286 ---IRSLEVCGSLRATGNRVASNWSRSC-ISPDESYVAAGSADGSVYIWSISKADIVRTL 341
+ +VC + ++ ++ SC S + +V GS ++ ++++ + + L
Sbjct: 279 NTLVNYGKVCNN-----SKKGLKFTVSCGCSSEFVFVPYGS---TIAVYTVYSGEQITML 330
Query: 342 KEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
K H V C + + L S ++ + W
Sbjct: 331 KGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 8/121 (6%)
Query: 86 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG--CLGSVLDLAITHD-- 141
AH G + F + L++ G D ++LW+++ G + YG C S L T
Sbjct: 243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG 302
Query: 142 -NRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKV-CAVDVSKISSRHVVSAAYDRTLKV 199
+ + + + V+ V SG L GH V C V S + + S + D +
Sbjct: 303 CSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF--QELYSGSRDCNILA 360
Query: 200 W 200
W
Sbjct: 361 W 361
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 14/164 (8%)
Query: 220 LAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN 279
LA+S DG +I +G +G LRLW+ +TG LL+ + H A + S+ ++ G I++ +N
Sbjct: 114 LAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHR-APIVSVKWNKDGTHIISMDVEN 171
Query: 280 LHNLFDIRSLEVCG--SLRATGNRVASNWSRSCISP---------DESYVAAGSADGSVY 328
+ L+++ S V L+ TG + + S D+ +V G G+++
Sbjct: 172 VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK-GAIF 230
Query: 329 IWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
++ I++ L H P+ ++ K L SA +G + +W
Sbjct: 231 VYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 93/200 (46%), Gaps = 5/200 (2%)
Query: 103 LISGGQDKSIKLWDTNTGSLSSTLYGCLGSV-LDLAITHDNRSVIAASSSNNLYVWDVNS 161
+ISG + +L +T S+++ + GS+ +D+ D++ VI ++V+ +
Sbjct: 178 VISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGA-IFVYQITE 236
Query: 162 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALA 221
L GH + ++ + +++ ++SA+ D TL++W G N HS A
Sbjct: 237 KTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSA 295
Query: 222 FSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLH 281
+ + S +DG++RLW ++ LL+ ++ + + +S+ G + D
Sbjct: 296 SWVGDDKVISCSMDGSVRLWSLKQNTLLA-LSIVDGVPIFAGRISQDGQKYAVAFMDGQV 354
Query: 282 NLFDIRSLEVCGSLRATGNR 301
N++D++ L S GNR
Sbjct: 355 NVYDLKKLN-SKSRSLYGNR 373
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/329 (20%), Positives = 132/329 (40%), Gaps = 49/329 (14%)
Query: 34 NALYEDMIDRLKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHK--INAHEGGC 91
N L E ++ + + + +LA+ +V +EG +++ + T+ + +H ++A G
Sbjct: 54 NPLDESILAYGEKNSVARLAR-----IVETDQEGKKYW-KLTIIAELRHPFALSASSGKT 107
Query: 92 AS----ILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIA 147
+ + + ++ +++G ++ ++LW+ TG+L + L ++ + D +I+
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIIS 166
Query: 148 ASSSNNLYVWDVNSGRVRHTL----TGHT---------DKVCAVDVSKISSRHVVSAAYD 194
N +W+V SG V TG + D VDV + V
Sbjct: 167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK 226
Query: 195 RTLKVWDLHKGYCVNTII-FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA 253
+ V+ + + +I H + L F+ + + S DG LR+W G +
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY 286
Query: 254 AHSLAAVTS--------ISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASN 305
HS + V++ IS S G++ L S + N + +L + + R
Sbjct: 287 GHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNT-----LLALSIVDGVPIFAGR---- 337
Query: 306 WSRSCISPDESYVAAGSADGSVYIWSISK 334
IS D A DG V ++ + K
Sbjct: 338 -----ISQDGQKYAVAFMDGQVNVYDLKK 361
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 19/191 (9%)
Query: 167 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG----YCVNTIIFHSNC-NALA 221
TL+GH+ +VC + + RH+ S D + VW G + T H A+A
Sbjct: 236 TLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 222 FSMDGQTIFS---GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 278
+ + + G D ++R+W++ +G LS V AHS V SI S ++ SG
Sbjct: 295 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWSPHYKELI-SGHG 351
Query: 279 NLHN---LFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA 335
N ++ ++ L+ +RV S +SPD + VA+ +AD ++ +W +
Sbjct: 352 FAQNQLVIWKYPTMAKVAELKGHTSRVLS----LTMSPDGATVASAAADETLRLWRCFEL 407
Query: 336 DIVRTLKEHTA 346
D R + A
Sbjct: 408 DPARRREREKA 418
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 10/204 (4%)
Query: 96 FEYNSARLISGGQDKSIKLWDTNTGSLS-STLYGCLGSVLDLAITHDNRSVIAASSSNNL 154
+NS L SG + I D +TL G V L D R + + + N +
Sbjct: 206 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 265
Query: 155 YVWDVNSGR----VRHTLTGHTDKVCAVDVSKISSRHVVSAA--YDRTLKVWDLHKGYCV 208
VW G T T H V AV S + + DR +++W++ G C+
Sbjct: 266 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 325
Query: 209 NTIIFHSNCNALAFSMDGQTIFSGH--IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLS 266
+ + HS ++ +S + + SGH L +W T ++E+ H+ + V S+++S
Sbjct: 326 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT-SRVLSLTMS 384
Query: 267 RSGNIILTSGRDNLHNLFDIRSLE 290
G + ++ D L+ L+
Sbjct: 385 PDGATVASAAADETLRLWRCFELD 408
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 115/290 (39%), Gaps = 20/290 (6%)
Query: 95 LFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGS--VLDLAITHDNRSVIAASSSN 152
L +++S +++ D S+ LW ++G + L + +A + + +SS
Sbjct: 121 LVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA 180
Query: 153 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSK--ISSRHVVSAAYDRTLKVWDLHKGYCVNT 210
+ +WDV + +T H+ +V ++ + +SS + ++V + H V T
Sbjct: 181 EVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHH----VAT 236
Query: 211 IIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGK----LLSEVAAHSLAAVTSIS 264
+ HS C L ++ DG+ + SG D + +W G+ L H A
Sbjct: 237 LSGHSQEVC-GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 295
Query: 265 LSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP--DESYVAAGS 322
N++ T G + + IR VC + S SP E G
Sbjct: 296 CPWQSNVLATGGGTSDRH---IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF 352
Query: 323 ADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
A + IW V LK HT+ VLS + S G +ASA + + +W
Sbjct: 353 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 10/167 (5%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLS----STLYGCLGSVLDLAIT 139
++ H + + + L SGG D + +W + G T G+V +A
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 296
Query: 140 HDNRSVIA---ASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRT 196
+V+A +S ++ +W+V SG + H+ +VC++ S + + +
Sbjct: 297 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKELISGHGFAQN 355
Query: 197 -LKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLW 241
L +W V + H S +L S DG T+ S D LRLW
Sbjct: 356 QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 19/191 (9%)
Query: 167 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG----YCVNTIIFHSNC-NALA 221
TL+GH+ +VC + + RH+ S D + VW G + T H A+A
Sbjct: 225 TLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 222 FSMDGQTIFS---GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 278
+ + + G D ++R+W++ +G LS V AHS V SI S ++ SG
Sbjct: 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWSPHYKELI-SGHG 340
Query: 279 NLHN---LFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA 335
N ++ ++ L+ +RV S +SPD + VA+ +AD ++ +W +
Sbjct: 341 FAQNQLVIWKYPTMAKVAELKGHTSRVLS----LTMSPDGATVASAAADETLRLWRCFEL 396
Query: 336 DIVRTLKEHTA 346
D R + A
Sbjct: 397 DPARRREREKA 407
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 10/204 (4%)
Query: 96 FEYNSARLISGGQDKSIKLWDTNTGSLS-STLYGCLGSVLDLAITHDNRSVIAASSSNNL 154
+NS L SG + I D +TL G V L D R + + + N +
Sbjct: 195 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 254
Query: 155 YVWDVNSGR----VRHTLTGHTDKVCAVDVSKISSRHVVSAA--YDRTLKVWDLHKGYCV 208
VW G T T H V AV S + + DR +++W++ G C+
Sbjct: 255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314
Query: 209 NTIIFHSNCNALAFSMDGQTIFSGH--IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLS 266
+ + HS ++ +S + + SGH L +W T ++E+ H+ + V S+++S
Sbjct: 315 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT-SRVLSLTMS 373
Query: 267 RSGNIILTSGRDNLHNLFDIRSLE 290
G + ++ D L+ L+
Sbjct: 374 PDGATVASAAADETLRLWRCFELD 397
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 115/290 (39%), Gaps = 20/290 (6%)
Query: 95 LFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGS--VLDLAITHDNRSVIAASSSN 152
L +++S +++ D S+ LW ++G + L + +A + + +SS
Sbjct: 110 LVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA 169
Query: 153 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSK--ISSRHVVSAAYDRTLKVWDLHKGYCVNT 210
+ +WDV + +T H+ +V ++ + +SS + ++V + H V T
Sbjct: 170 EVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHH----VAT 225
Query: 211 IIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGK----LLSEVAAHSLAAVTSIS 264
+ HS C L ++ DG+ + SG D + +W G+ L H A
Sbjct: 226 LSGHSQEVC-GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 284
Query: 265 LSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP--DESYVAAGS 322
N++ T G + + IR VC + S SP E G
Sbjct: 285 CPWQSNVLATGGGTSDRH---IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF 341
Query: 323 ADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
A + IW V LK HT+ VLS + S G +ASA + + +W
Sbjct: 342 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 18/222 (8%)
Query: 128 GCLGSVLDLAITHDNRSVIAASSSN-NLYVWDVNSG----RVRH---TLTGHTDKVCAVD 179
G VLD+A N +VIA+ S + + VW++ G +R TL GHT +V V
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 180 VSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI---IFHSNCNALAFSMDGQTIFSGHIDG 236
+ ++SA D + VWD+ G V T+ + ++ +S DG I + D
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 237 NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHN----LFDIRSLEVC 292
+R+ + + G +++E ++ S ILT+G + L+D + LE
Sbjct: 199 RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP 258
Query: 293 GSLRATGNRVASNWSRSCISPDESYV-AAGSADGSVYIWSIS 333
SL+ +S PD + V G D S+ + I+
Sbjct: 259 LSLQELDT--SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT 298
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 314 DESYVAAGSADGSVYIWSISKADIVRTLKE-------HTAPVLSCSWSGLGK-PLASADK 365
+++ +A+GS D +V +W I +V L+E HT V +W + L SA
Sbjct: 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGX 152
Query: 366 NGVVCVW 372
+ V+ VW
Sbjct: 153 DNVILVW 159
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 80/196 (40%), Gaps = 12/196 (6%)
Query: 90 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLS-STLYGCLGSVLDLAITHDNRSVIAA 148
GC S +N L SG + +I D + TL G V LA D + +
Sbjct: 180 GCLS----WNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASG 235
Query: 149 SSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAA--YDRTLKVWDLHKGY 206
+ N + +WD S + T T H V AV S + + D+ + W+ G
Sbjct: 236 GNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA 295
Query: 207 CVNTIIFHSNCNALAFSMDGQTIFSGH--IDGNLRLWDIQTGKLLSEV--AAHSLAAVTS 262
VNT+ S +L +S + I S H D NL +W + L +V AH + S
Sbjct: 296 RVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYS 355
Query: 263 ISLSRSGNIILTSGRD 278
+LS G I+ T+ D
Sbjct: 356 -ALSPDGRILSTAASD 370
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Query: 234 IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG 293
++ N+ +W+ +G + + V S+ S G+ + + L +++D+ S
Sbjct: 111 LERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR 170
Query: 294 SLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD-IVRTLKEHTAPVLSCS 352
++ RV C+S + +++GS G+++ + A+ + TL+ H++ V +
Sbjct: 171 TMAGHQARVG------CLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLA 224
Query: 353 WSGLGKPLASADKNGVVCVW 372
W G LAS + VV +W
Sbjct: 225 WRSDGLQLASGGNDNVVQIW 244
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 6/145 (4%)
Query: 72 AESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLG 131
A S++P K NA A ++ N G DK I W+ TG+ +T+
Sbjct: 246 ARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-DAGS 304
Query: 132 SVLDLAITHDNRSVIAAS--SSNNLYVWDV-NSGRVRHT-LTGHTDKVCAVDVSKISSRH 187
V L + ++ +++ NNL +W +SG + + H +V +S R
Sbjct: 305 QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRI 363
Query: 188 VVSAAYDRTLKVWDLHKGYCVNTII 212
+ +AA D LK W ++ G V I
Sbjct: 364 LSTAASDENLKFWRVYDGDHVKRPI 388
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 134/297 (45%), Gaps = 37/297 (12%)
Query: 95 LFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGS-VLDLAITHDNRSVIAASSSNN 153
L ++++ +++ ++++ +W+ ++GS+S+ + V + +HD S ++ N
Sbjct: 98 LLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDG-SFLSVGLGNG 156
Query: 154 LY-VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVS------AAYDRTLKVWDLHKGY 206
L ++DV S T+ GH +V + +RHV+S A + +++ +
Sbjct: 157 LVDIYDVESQTKLRTMAGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVRI----ANH 208
Query: 207 CVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSIS 264
+ T+ HS+ C LA+ DG + SG D +++WD ++ H+ AAV +++
Sbjct: 209 QIGTLQGHSSEVC-GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN-AAVKAVA 266
Query: 265 LSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRV----ASNWSRSCI-SPDESYVA 319
+ +L +G + + ATG RV A + S I SP +
Sbjct: 267 WCPWQSNLLATGGGTMDKQIHFWNA-------ATGARVNTVDAGSQVTSLIWSPHSKEIM 319
Query: 320 A--GSADGSVYIWSISKADIVRT--LKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
+ G D ++ IWS S + + + + H VL + S G+ L++A + + W
Sbjct: 320 STHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 18/222 (8%)
Query: 128 GCLGSVLDLAITHDNRSVIAASSSN-NLYVWDVNSG----RVRH---TLTGHTDKVCAVD 179
G VLD+A N +VIA+ S + + VW++ G +R TL GHT +V V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 180 VSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI---IFHSNCNALAFSMDGQTIFSGHIDG 236
+ ++SA D + VWD+ G V T+ + ++ +S DG I + D
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 237 NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHN----LFDIRSLEVC 292
+R+ + + G +++E ++ S ILT+G + L+D + LE
Sbjct: 199 RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP 258
Query: 293 GSLRATGNRVASNWSRSCISPDESYV-AAGSADGSVYIWSIS 333
SL+ +S PD + V G D S+ + I+
Sbjct: 259 LSLQELDT--SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT 298
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 314 DESYVAAGSADGSVYIWSISKADIVRTLKE-------HTAPVLSCSWSGLGK-PLASADK 365
+++ +A+GS D +V +W I +V L+E HT V +W + L SA
Sbjct: 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC 152
Query: 366 NGVVCVW 372
+ V+ VW
Sbjct: 153 DNVILVW 159
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 10/204 (4%)
Query: 96 FEYNSARLISGGQDKSIKLWDTNTGSLS-STLYGCLGSVLDLAITHDNRSVIAASSSNNL 154
+NS L SG + I D +TL G V L D R + + + N +
Sbjct: 115 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 174
Query: 155 YVWDVNSGR----VRHTLTGHTDKVCAVDVSKISSRHVVSAA--YDRTLKVWDLHKGYCV 208
VW G T T H V AV S + + DR +++W++ G C+
Sbjct: 175 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234
Query: 209 NTIIFHSNCNALAFSMDGQTIFSGH--IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLS 266
+ + HS ++ +S + + SGH L +W T ++E+ H+ + V S+++S
Sbjct: 235 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT-SRVLSLTMS 293
Query: 267 RSGNIILTSGRDNLHNLFDIRSLE 290
G + ++ D L+ L+
Sbjct: 294 PDGATVASAAADETLRLWRCFELD 317
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 19/181 (10%)
Query: 167 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG----YCVNTIIFHSNC-NALA 221
TL+GH+ +VC + + RH+ S D + VW G + T H A+A
Sbjct: 145 TLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 222 FSMDGQTIFS---GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 278
+ + + G D ++R+W++ +G LS V AHS V SI S ++ SG
Sbjct: 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWSPHYKELI-SGHG 260
Query: 279 NLHN---LFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA 335
N ++ ++ L+ +RV S +SPD + VA+ +AD ++ +W +
Sbjct: 261 FAQNQLVIWKYPTMAKVAELKGHTSRVLS----LTMSPDGATVASAAADETLRLWRCFEL 316
Query: 336 D 336
D
Sbjct: 317 D 317
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 114/289 (39%), Gaps = 18/289 (6%)
Query: 95 LFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGS--VLDLAITHDNRSVIAASSSN 152
L +++S +++ D S+ LW ++G + L + +A + + +SS
Sbjct: 30 LVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA 89
Query: 153 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSK--ISSRHVVSAAYDRTLKVWDLHKGYCVNT 210
+ +WDV + +T H+ +V ++ + +SS + ++V + H V T
Sbjct: 90 EVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHH----VAT 145
Query: 211 IIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGK----LLSEVAAHSLAAVTSISL 265
+ HS L ++ DG+ + SG D + +W G+ L H A
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205
Query: 266 SRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP--DESYVAAGSA 323
N++ T G + + IR VC + S SP E G A
Sbjct: 206 PWQSNVLATGGGTSDRH---IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 262
Query: 324 DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
+ IW V LK HT+ VLS + S G +ASA + + +W
Sbjct: 263 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 95/230 (41%), Gaps = 25/230 (10%)
Query: 83 KINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDN 142
K+ HE + + L S +D S +W + G TL G G++ + +
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT 86
Query: 143 RSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLK---- 198
+ + S+ ++ +WDV++G+ T V V+ S + + A D +K
Sbjct: 87 KYCVTGSADYSIKLWDVSNGQCVATWKSPV-PVKRVEFSPCGNYFL--AILDNVMKNPGS 143
Query: 199 --VWDLHKGYC-----------VNTIIFHSNCNA---LAFSMDGQTIFSGHIDGNLRLWD 242
++++ + ++ II H +A +S G+ I +GH DG + +D
Sbjct: 144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYD 203
Query: 243 IQTG-KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV 291
+ + + + H +++ + S +TS RD L D+ +L+V
Sbjct: 204 VSNNYEYVDSIDLHE-KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV 252
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 25/203 (12%)
Query: 156 VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS 215
VW +G TL GHT + ++DV +++ V+ + D ++K+WD+ G CV T
Sbjct: 58 VWYSLNGERLGTLDGHTGTIWSIDVDCF-TKYCVTGSADYSIKLWDVSNGQCVATWKSPV 116
Query: 216 NCNALAFSMDGQTIFSGHID------GNLRLWDIQ----TGKL--LSEVAAHS------L 257
+ FS G F +D G++ +++I+ T +L +SE H L
Sbjct: 117 PVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175
Query: 258 AAVTSISLSRSGNIILTSGRDNLHNLFDI-RSLEVCGSLRATGNRVASNWSRSCISPDES 316
A T S G I+ +D + +D+ + E S+ + S SPD +
Sbjct: 176 DAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSI----SDMQFSPDLT 231
Query: 317 YVAAGSADGSVYIWSISKADIVR 339
Y S D + ++ +S +++
Sbjct: 232 YFITSSRDTNSFLVDVSTLQVLK 254
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS--RSCISPDES 316
+T + ++ G+++ + +D+ +++ + E G+L + WS C +
Sbjct: 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDG---HTGTIWSIDVDCFT---K 87
Query: 317 YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLG 357
Y GSAD S+ +W +S V T K PV +S G
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCVATWKS-PVPVKRVEFSPCG 127
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 115/278 (41%), Gaps = 57/278 (20%)
Query: 99 NSARLISGGQDKSIKLWDTNTGSLSS--TL-YGCLGSVLDLAITHDNRSVIAASSSNNLY 155
+S + + G D +I++WD T TL LG+ + N +I+ S L
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 322
Query: 156 VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW---DLHKGYCVNTII 212
+++ V T++GH + A+ V+ + +S +YD + W +H+ + N I+
Sbjct: 323 FYELGHDEVLKTISGHNKGITALTVNPL-----ISGSYDGRIMEWSSSSMHQDHS-NLIV 376
Query: 213 FHSNCNALAFS---------MDGQT---------IFSGHIDG---------NLRLWDIQT 245
N A +S ++G T + S + DG +L + T
Sbjct: 377 SLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFT 436
Query: 246 GKLLSEVAAHSLAAVTSISLS------RSGNIILTSGRDNLHNLFDIRSLEVCGSLRATG 299
G ++ V +S + S+S + GN I +L FD+++ LRA
Sbjct: 437 GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT-----PLRAKP 491
Query: 300 NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI 337
+ ++ ISP E+Y+AAG G + ++ + ++
Sbjct: 492 SYIS-------ISPSETYIAAGDVMGKILLYDLQSREV 522
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 7/130 (5%)
Query: 133 VLDLAITHDN-RSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCA--VDVSKISSRHVV 189
V D+ + D+ VI S + +D SG + + V +S + S+
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA 268
Query: 190 SAAYDRTLKVWDLHKGYCVNTIIFHS----NCNALAFSMDGQTIFSGHIDGNLRLWDIQT 245
+ D T++VWD+ CV N + I S +DG L +++
Sbjct: 269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH 328
Query: 246 GKLLSEVAAH 255
++L ++ H
Sbjct: 329 DEVLKTISGH 338
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 114/278 (41%), Gaps = 57/278 (20%)
Query: 99 NSARLISGGQDKSIKLWDTNTGSLSS--TL-YGCLGSVLDLAITHDNRSVIAASSSNNLY 155
+S + + G D +I++WD T TL LG+ + N +I+ S L
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 322
Query: 156 VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW---DLHKGYCVNTII 212
+++ V T++GH + A+ V+ + +S +YD + W H+ + N I+
Sbjct: 323 FYELGHDEVLKTISGHNKGITALTVNPL-----ISGSYDGRIXEWSSSSXHQDHS-NLIV 376
Query: 213 FHSNCNALAFS---------MDGQT---------IFSGHIDG---------NLRLWDIQT 245
N A +S ++G T + S + DG +L + T
Sbjct: 377 SLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFT 436
Query: 246 GKLLSEVAAHSLAAVTSISLS------RSGNIILTSGRDNLHNLFDIRSLEVCGSLRATG 299
G ++ V +S + S+S + GN I +L FD+++ LRA
Sbjct: 437 GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT-----PLRAKP 491
Query: 300 NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI 337
+ ++ ISP E+Y+AAG G + ++ + ++
Sbjct: 492 SYIS-------ISPSETYIAAGDVXGKILLYDLQSREV 522
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 7/130 (5%)
Query: 133 VLDLAITHDN-RSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCA--VDVSKISSRHVV 189
V D+ + D+ VI S + +D SG + + V +S + S+
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA 268
Query: 190 SAAYDRTLKVWDLHKGYCVNTIIFHS----NCNALAFSMDGQTIFSGHIDGNLRLWDIQT 245
+ D T++VWD+ CV N + I S +DG L +++
Sbjct: 269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH 328
Query: 246 GKLLSEVAAH 255
++L ++ H
Sbjct: 329 DEVLKTISGH 338
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 105 SGGQDKSIKLWDT---NTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNN-LYVWDVN 160
S D+ + +WDT NT S T+ V L+ + ++A S++ + +WD+
Sbjct: 251 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 310
Query: 161 SGRVR-HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 204
+ +++ H+ H D++ V S + + S+ DR L VWDL K
Sbjct: 311 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 355
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 16/156 (10%)
Query: 103 LISGGQDKSIKLWDTNTGS-------LSSTLYGCLGSVLDLAITHDNRSVIAA-SSSNNL 154
L+S D +I LWD N + G V D+A + S+ + + L
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 258
Query: 155 YVWDV---NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI 211
+WD N+ + HT+ HT +V + + S + + + D+T+ +WDL + +
Sbjct: 259 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL-RNLKLKLH 317
Query: 212 IFHSNCNAL---AFSMDGQTIF-SGHIDGNLRLWDI 243
F S+ + + +S +TI S D L +WD+
Sbjct: 318 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 103/248 (41%), Gaps = 61/248 (24%)
Query: 168 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQ 227
L GH + + + + +++SA+ D T+ +WD++ + +I D +
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI------------DAK 226
Query: 228 TIFSGHI---------------------DGNLRLWDIQ---TGKLLSEVAAHSLAAVTSI 263
IF+GH D L +WD + T K V AH+ A V +
Sbjct: 227 NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT-AEVNCL 285
Query: 264 SLSRSGNIILTSGR-DNLHNLFDIRSLEV-CGSLRATGNRVAS-NWSRSCISPDESYVAA 320
S + IL +G D L+D+R+L++ S + + + WS +E+ +A+
Sbjct: 286 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH----NETILAS 341
Query: 321 GSADGSVYIWSISKADIVRTLKE--------------HTAPVLSCSWSGLGKP--LASAD 364
D +++W +SK ++ ++ HTA + SW+ +P + S
Sbjct: 342 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-NEPWIICSVS 400
Query: 365 KNGVVCVW 372
++ ++ VW
Sbjct: 401 EDNIMQVW 408
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 17/142 (11%)
Query: 78 STCKHKINAHEGGCASILF-EYNSARLISGGQDKSIKLWDTNTGSLS-STLYGCLGSVLD 135
S H ++AH + F Y+ L +G DK++ LWD L + +
Sbjct: 269 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ 328
Query: 136 LAITHDNRSVIAASSSN-NLYVWDVNS-GRVRHTLT-------------GHTDKVCAVDV 180
+ + N +++A+S ++ L+VWD++ G + T GHT K+
Sbjct: 329 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 388
Query: 181 SKISSRHVVSAAYDRTLKVWDL 202
+ + S + D ++VW +
Sbjct: 389 NPNEPWIICSVSEDNIMQVWQM 410
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 105 SGGQDKSIKLWDT---NTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNN-LYVWDVN 160
S D+ + +WDT NT S T+ V L+ + ++A S++ + +WD+
Sbjct: 249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 308
Query: 161 SGRVR-HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 204
+ +++ H+ H D++ V S + + S+ DR L VWDL K
Sbjct: 309 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 16/156 (10%)
Query: 103 LISGGQDKSIKLWDTNTGS-------LSSTLYGCLGSVLDLAITHDNRSVIAA-SSSNNL 154
L+S D +I LWD N + G V D+A + S+ + + L
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256
Query: 155 YVWDV---NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI 211
+WD N+ + HT+ HT +V + + S + + + D+T+ +WDL + +
Sbjct: 257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL-RNLKLKLH 315
Query: 212 IFHSNCNAL---AFSMDGQTIF-SGHIDGNLRLWDI 243
F S+ + + +S +TI S D L +WD+
Sbjct: 316 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 103/248 (41%), Gaps = 61/248 (24%)
Query: 168 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQ 227
L GH + + + + +++SA+ D T+ +WD++ + +I D +
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI------------DAK 224
Query: 228 TIFSGHI---------------------DGNLRLWDIQ---TGKLLSEVAAHSLAAVTSI 263
IF+GH D L +WD + T K V AH+ A V +
Sbjct: 225 NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT-AEVNCL 283
Query: 264 SLSRSGNIILTSGR-DNLHNLFDIRSLEV-CGSLRATGNRVAS-NWSRSCISPDESYVAA 320
S + IL +G D L+D+R+L++ S + + + WS +E+ +A+
Sbjct: 284 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH----NETILAS 339
Query: 321 GSADGSVYIWSISKADIVRTLKE--------------HTAPVLSCSWSGLGKP--LASAD 364
D +++W +SK ++ ++ HTA + SW+ +P + S
Sbjct: 340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-NEPWIICSVS 398
Query: 365 KNGVVCVW 372
++ ++ VW
Sbjct: 399 EDNIMQVW 406
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 17/142 (11%)
Query: 78 STCKHKINAHEGGCASILF-EYNSARLISGGQDKSIKLWDTNTGSLS-STLYGCLGSVLD 135
S H ++AH + F Y+ L +G DK++ LWD L + +
Sbjct: 267 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ 326
Query: 136 LAITHDNRSVIAASSSN-NLYVWDVNS-GRVRHTLT-------------GHTDKVCAVDV 180
+ + N +++A+S ++ L+VWD++ G + T GHT K+
Sbjct: 327 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 386
Query: 181 SKISSRHVVSAAYDRTLKVWDL 202
+ + S + D ++VW +
Sbjct: 387 NPNEPWIICSVSEDNIMQVWQM 408
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 109 DKSIKLWDT---NTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNN-LYVWDVNSGRV 164
D+ + +WDT NT S T+ V L+ + ++A S++ + +WD+ + ++
Sbjct: 257 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 316
Query: 165 R-HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 204
+ H+ H D++ V S + + S+ DR L VWDL K
Sbjct: 317 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 357
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 16/156 (10%)
Query: 103 LISGGQDKSIKLWDTNTGS-------LSSTLYGCLGSVLDLAITHDNRSVIAA-SSSNNL 154
L+S D +I LWD N + G V D+A + S+ + + L
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 260
Query: 155 YVWDV---NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI 211
+WD N+ + HT+ HT +V + + S + + + D+T+ +WDL + +
Sbjct: 261 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL-RNLKLKLH 319
Query: 212 IFHSNCNAL---AFSMDGQTIF-SGHIDGNLRLWDI 243
F S+ + + +S +TI S D L +WD+
Sbjct: 320 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 103/248 (41%), Gaps = 61/248 (24%)
Query: 168 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQ 227
L GH + + + + +++SA+ D T+ +WD++ + +I D +
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI------------DAK 228
Query: 228 TIFSGHI---------------------DGNLRLWDIQ---TGKLLSEVAAHSLAAVTSI 263
IF+GH D L +WD + T K V AH+ A V +
Sbjct: 229 NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT-AEVNCL 287
Query: 264 SLSRSGNIILTSGR-DNLHNLFDIRSLEV-CGSLRATGNRVAS-NWSRSCISPDESYVAA 320
S + IL +G D L+D+R+L++ S + + + WS +E+ +A+
Sbjct: 288 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH----NETILAS 343
Query: 321 GSADGSVYIWSISKADIVRTLKE--------------HTAPVLSCSWSGLGKP--LASAD 364
D +++W +SK ++ ++ HTA + SW+ +P + S
Sbjct: 344 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-NEPWIICSVS 402
Query: 365 KNGVVCVW 372
++ ++ VW
Sbjct: 403 EDNIMQVW 410
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 17/142 (11%)
Query: 78 STCKHKINAHEGGCASILF-EYNSARLISGGQDKSIKLWDTNTGSLS-STLYGCLGSVLD 135
S H ++AH + F Y+ L +G DK++ LWD L + +
Sbjct: 271 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ 330
Query: 136 LAITHDNRSVIAASSSN-NLYVWDVNS-GRVRHTLT-------------GHTDKVCAVDV 180
+ + N +++A+S ++ L+VWD++ G + T GHT K+
Sbjct: 331 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 390
Query: 181 SKISSRHVVSAAYDRTLKVWDL 202
+ + S + D ++VW +
Sbjct: 391 NPNEPWIICSVSEDNIMQVWQM 412
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 248 LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE-VCGSLRATGNRVASNW 306
LL V AH + ++ + +G ++ + G D ++ +C S+ + G++
Sbjct: 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVR- 65
Query: 307 SRSCISPDESYVAAGSADGSVYIWSISKADI--VRTLKEHTAPVLSCSWSGLGKPLASAD 364
+ SP +Y+A+ S D + IW ++ D V TL+ H V S +W+ G LA+
Sbjct: 66 -KVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCS 124
Query: 365 KNGVVCVW 372
++ V VW
Sbjct: 125 RDKSVWVW 132
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLD---- 135
C + HE S+ + + L + +DKS+ +W+ + Y C+ SVL+
Sbjct: 97 CVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD----EEDEYECV-SVLNSHTQ 151
Query: 136 ---LAITHDNRSVIAASSSNN---LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVV 189
+ H ++ ++A++S ++ LY + + TL GH V ++ S + +
Sbjct: 152 DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLA 210
Query: 190 SAAYDRTLKVW 200
S + DRT+++W
Sbjct: 211 SCSDDRTVRIW 221
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 84/222 (37%), Gaps = 20/222 (9%)
Query: 162 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF----HSNC 217
GRV H D C + + S DR +++W + +
Sbjct: 9 GRV----PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTV 64
Query: 218 NALAFSMDGQTIFSGHIDGNLRLWDIQTGKL--LSEVAAHSLAAVTSISLSRSGNIILTS 275
+A+S G + S D +W ++ + H V S++ + SGN++ T
Sbjct: 65 RKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHE-NEVKSVAWAPSGNLLATC 123
Query: 276 GRDNLHNLFDIRS---LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI 332
RD ++++ E L + V P + +A+ S D +V ++
Sbjct: 124 SRDKSVWVWEVDEEDEYECVSVLNSHTQDV----KHVVWHPSQELLASASYDDTVKLYRE 179
Query: 333 SKADIV--RTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
+ D V TL+ H + V S ++ G+ LAS + V +W
Sbjct: 180 EEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 19 WMLQKMQDAERLNEANALYEDMIDRLKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPS 78
W + + + E ++ N+ +D+ + E LA D V+ + E
Sbjct: 132 WEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVK-------LYREEEDDW 184
Query: 79 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLW 115
C + HE S+ F+ + RL S D+++++W
Sbjct: 185 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 109 DKSIKLWDT---NTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNN-LYVWDVNSGRV 164
D+ + +WDT NT S ++ V L+ + ++A S++ + +WD+ + ++
Sbjct: 249 DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 308
Query: 165 R-HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 204
+ H+ H D++ V S + + S+ DR L VWDL K
Sbjct: 309 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSK 349
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 61/248 (24%)
Query: 168 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQ 227
L GH + + + S H++SA+ D T+ +WD+ S +D +
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDI------------SAVPKEGKVVDAK 220
Query: 228 TIFSGHI---------------------DGNLRLWDIQ---TGKLLSEVAAHSLAAVTSI 263
TIF+GH D L +WD + T K V AH+ A V +
Sbjct: 221 TIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHT-AEVNCL 279
Query: 264 SLSRSGNIILTSGR-DNLHNLFDIRSLEV-CGSLRATGNRVAS-NWSRSCISPDESYVAA 320
S + IL +G D L+D+R+L++ S + + + WS +E+ +A+
Sbjct: 280 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH----NETILAS 335
Query: 321 GSADGSVYIWSISKADIVRTLKE--------------HTAPVLSCSWSGLGKP--LASAD 364
D + +W +SK ++ ++ HTA + SW+ +P + S
Sbjct: 336 SGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNP-NEPWVICSVS 394
Query: 365 KNGVVCVW 372
++ ++ VW
Sbjct: 395 EDNIMQVW 402
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 56/142 (39%), Gaps = 17/142 (11%)
Query: 78 STCKHKINAHEGGCASILF-EYNSARLISGGQDKSIKLWDTNTGSLS-STLYGCLGSVLD 135
S H ++AH + F Y+ L +G DK++ LWD L + +
Sbjct: 263 SKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ 322
Query: 136 LAITHDNRSVIAASSSN-NLYVWDVN--------------SGRVRHTLTGHTDKVCAVDV 180
+ + N +++A+S ++ L VWD++ + GHT K+
Sbjct: 323 VQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSW 382
Query: 181 SKISSRHVVSAAYDRTLKVWDL 202
+ + S + D ++VW +
Sbjct: 383 NPNEPWVICSVSEDNIMQVWQM 404
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 105 SGGQDKSIKLWDT--NTGSLSSTLYGCLGSVLD-LAITHDNRSVIAASSSNN-LYVWDVN 160
S D+ + +WDT NT S S L + ++ L+ + ++A S++ + +WD+
Sbjct: 247 SVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
Query: 161 SGRVR-HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 204
+ +++ HT H D++ V S + + S+ DR L VWDL K
Sbjct: 307 NLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 16/159 (10%)
Query: 100 SARLISGGQDKSIKLWDTNTGS-------LSSTLYGCLGSVLDLAITHDNRSVIAA-SSS 151
S L+S D ++ LWD N G + G V D+A + S+ + +
Sbjct: 192 SGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADD 251
Query: 152 NNLYVWDVNSG---RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV 208
L +WD S + H + HT +V + + S + + + D+T+ +WDL + +
Sbjct: 252 QKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL-RNLKL 310
Query: 209 NTIIFHSNCNAL---AFSMDGQTIF-SGHIDGNLRLWDI 243
F S+ + + +S +TI S D L +WD+
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 44/194 (22%)
Query: 168 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQ 227
L GH + + + S H++SA+ D T+ +WD++ G I+ D +
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIV------------DAK 222
Query: 228 TIFSGHI---------------------DGNLRLWDIQ---TGKLLSEVAAHSLAAVTSI 263
IF+GH D L +WD + T K V AH+ A V +
Sbjct: 223 AIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHT-AEVNCL 281
Query: 264 SLSRSGNIILTSGR-DNLHNLFDIRSLEV-CGSLRATGNRVAS-NWSRSCISPDESYVAA 320
S + IL +G D L+D+R+L++ + + + + +WS +E+ +A+
Sbjct: 282 SFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPH----NETILAS 337
Query: 321 GSADGSVYIWSISK 334
D + +W +SK
Sbjct: 338 SGTDRRLNVWDLSK 351
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 74 STVPSTCKHKINAHEGGCASILF-EYNSARLISGGQDKSIKLWDTNTGSLS-STLYGCLG 131
S S H ++AH + F Y+ L +G DK++ LWD L T
Sbjct: 261 SNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKD 320
Query: 132 SVLDLAITHDNRSVIAASSSN-NLYVWDV 159
+ + + N +++A+S ++ L VWD+
Sbjct: 321 EIFQVHWSPHNETILASSGTDRRLNVWDL 349
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 105 SGGQDKSIKLWDT--NTGSLSSTLYGCLGSVLD-LAITHDNRSVIAASSSNN-LYVWDVN 160
S D+ + +WDT NT S S L + ++ L+ + ++A S++ + +WD+
Sbjct: 247 SVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
Query: 161 SGRVR-HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 204
+ +++ HT H D++ V S + + S+ DR L VWDL K
Sbjct: 307 NLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 16/159 (10%)
Query: 100 SARLISGGQDKSIKLWDTNTGS-------LSSTLYGCLGSVLDLAITHDNRSVIAA-SSS 151
S L+S D ++ LWD N G + G V D+A + S+ + +
Sbjct: 192 SGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADD 251
Query: 152 NNLYVWDVNSG---RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV 208
L +WD S + H + HT +V + + S + + + D+T+ +WDL + +
Sbjct: 252 QKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL-RNLKL 310
Query: 209 NTIIFHSNCNAL---AFSMDGQTIF-SGHIDGNLRLWDI 243
F S+ + + +S +TI S D L +WD+
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 44/194 (22%)
Query: 168 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQ 227
L GH + + + S H++SA+ D T+ +WD++ G I+ D +
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIV------------DAK 222
Query: 228 TIFSGHI---------------------DGNLRLWDIQ---TGKLLSEVAAHSLAAVTSI 263
IF+GH D L +WD + T K V AH+ A V +
Sbjct: 223 AIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHT-AEVNCL 281
Query: 264 SLSRSGNIILTSGR-DNLHNLFDIRSLEV-CGSLRATGNRVAS-NWSRSCISPDESYVAA 320
S + IL +G D L+D+R+L++ + + + + +WS +E+ +A+
Sbjct: 282 SFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPH----NETILAS 337
Query: 321 GSADGSVYIWSISK 334
D + +W +SK
Sbjct: 338 SGTDRRLNVWDLSK 351
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 17/146 (11%)
Query: 74 STVPSTCKHKINAHEGGCASILF-EYNSARLISGGQDKSIKLWDTNTGSLS-STLYGCLG 131
S S H ++AH + F Y+ L +G DK++ LWD L T
Sbjct: 261 SNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKD 320
Query: 132 SVLDLAITHDNRSVIAASSSN-NLYVWDVN--------------SGRVRHTLTGHTDKVC 176
+ + + N +++A+S ++ L VWD++ + GHT K+
Sbjct: 321 EIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKIS 380
Query: 177 AVDVSKISSRHVVSAAYDRTLKVWDL 202
+ + S + D +++W +
Sbjct: 381 DFSWNPNEPWVICSVSEDNIMQIWQM 406
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 136 LAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR 195
L ++ +R V+ + N+ + +++ G+ L H KV V ++ + +A+ D+
Sbjct: 215 LDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 273
Query: 196 TLKVWDLH----KGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRL-----WDIQTG 246
T+K+WDL K + ++ NA FS DG + + +R+ WD G
Sbjct: 274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG 333
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 136 LAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR 195
L ++ +R V+ + N+ + +++ G+ L H KV V ++ + +A+ D+
Sbjct: 216 LDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 274
Query: 196 TLKVWDLH----KGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRL-----WDIQTG 246
T+K+WDL K + ++ NA FS DG + + +R+ WD G
Sbjct: 275 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG 334
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 136 LAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR 195
L ++ +R V+ + N+ + +++ G+ L H KV V ++ + +A+ D+
Sbjct: 215 LDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 273
Query: 196 TLKVWDLH----KGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRL-----WDIQTG 246
T+K+WDL K + ++ NA FS DG + + +R+ WD G
Sbjct: 274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG 333
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 81/218 (37%), Gaps = 60/218 (27%)
Query: 103 LISGGQDKSIKLWDTNTGSLSSTLYGCLGS---------VLDLAITHDNRSVIA-ASSSN 152
L SGG + I +WD N + S + Y L V+ LA V A A SSN
Sbjct: 129 LASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN 188
Query: 153 NLYVWDVNSGR-VRH-----TLTGHTDKVCAVDVSKISSRHVVSAA---YDRTLKVWDLH 203
+WD+ + + V H +G ++ V+ +S V +A D ++ +WDL
Sbjct: 189 FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248
Query: 204 KGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRL-WDIQTGKLLSEVAAHSLAAVTS 262
NT + QT+ GH G L L W Q LL
Sbjct: 249 NA---NTPL--------------QTLNQGHQKGILSLDWCHQDEHLL------------- 278
Query: 263 ISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGN 300
L+SGRDN L++ S E A GN
Sbjct: 279 ----------LSSGRDNTVLLWNPESAEQLSQFPARGN 306
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 42/216 (19%), Positives = 96/216 (44%), Gaps = 25/216 (11%)
Query: 137 AITHDNRSVIAASSSNNLYVWDVNSGRVR-HTLTGHTDKVCAVDVSKIS-----SRHVVS 190
A + R + NL++W++ + + +++ GH + + A+D + +V+
Sbjct: 75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVT 134
Query: 191 AAYDRTLKVWDLHKG--YCVNTIIFHS----NCNALAF----SMDGQTIFSGHIDGNLRL 240
+ D T+KVWD + N +C +AF + + + + +G+ +G+++L
Sbjct: 135 GSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKL 194
Query: 241 WDIQTGKLLSEVAAHSLAAVTSISLSR---SGNIILTSGRDNLHNLFDIRSLEVCGSLRA 297
+D++ L E + V S+ R S N ++ + + ++FD+R+ +
Sbjct: 195 FDLRNMALRWETNIKN--GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS 252
Query: 298 TGNRV--ASNWS-RSCISPDESYVAAGSADGSVYIW 330
+ ++ W R E ++ AG A G +++W
Sbjct: 253 VSEKAHKSTVWQVRHLPQNRELFLTAGGA-GGLHLW 287
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 7/199 (3%)
Query: 179 DVSKISSRHVVSAAYDRTLKVWDL--HKGYCVNTIIFHSN---CNALAFSMDGQTIFSGH 233
DV+ +S + ++ A+ +++W++ + VN + + L+ DG SG
Sbjct: 99 DVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG 158
Query: 234 IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG 293
D ++++WD+ +L AHS + I L+ G D L+D R +
Sbjct: 159 KDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT 218
Query: 294 SLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSW 353
+ + D+++ A G G+V + +I D +T H+ + ++
Sbjct: 219 RIDFCASDTIPTSVTWHPEKDDTF-ACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAY 277
Query: 354 SGLGKP-LASADKNGVVCV 371
S P LAS ++ V V
Sbjct: 278 SYHSSPFLASISEDCTVAV 296
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/269 (19%), Positives = 100/269 (37%), Gaps = 61/269 (22%)
Query: 69 EFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG 128
+FF + + + A GC ++ + + + +S Q + + T GS S +
Sbjct: 100 QFFDQERI-------VAASSTGCVTVFLHHPNNQTLSVNQQWTTAHYHTGPGSPSYSSAP 152
Query: 129 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHV 188
C G V + N ++ GR+ H + V +D + S+ H
Sbjct: 153 CTGVVCN------NPEIVTVG----------EDGRINLFRADHKEAVRTIDNADSSTLHA 196
Query: 189 VSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDI-QTGK 247
V+ + RT ++ VN+I G L++WD Q G
Sbjct: 197 VT--FLRTPEI------LTVNSI------------------------GQLKIWDFRQQGN 224
Query: 248 LLSEVAAHSLAAVTSISLSRSGN---IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVAS 304
S++ + + V + R N ++ T G+D + +++D+R + SL A
Sbjct: 225 EPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKA--HEAE 282
Query: 305 NWSRSCISPDESYVAAGSADGSVYIWSIS 333
W + ++ S DGS++ W S
Sbjct: 283 MWEVHFHPSNPEHLFTCSEDGSLWHWDAS 311
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 23/162 (14%)
Query: 99 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 158
N+ +++ G+D I L+ + T+ S L ++ +S L +WD
Sbjct: 159 NNPEIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWD 218
Query: 159 V----NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-- 212
N +LTG + VD V + D L +WD+ +G +++
Sbjct: 219 FRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKA 278
Query: 213 ---------FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT 245
FH + + + +F+ DG+L WD T
Sbjct: 279 HEAEMWEVHFHPS--------NPEHLFTCSEDGSLWHWDAST 312
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 103 LISGGQDKSIKLWDTNTG--SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN 160
LI+G ++ W+ ++ G VLD+ + D V AS +WD++
Sbjct: 57 LIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS 116
Query: 161 SGRVRHTLTGHTDKVCAVDVSKISSRH-VVSAAYDRTLKVWD 201
S + + H V + K + V++ ++D+TLK WD
Sbjct: 117 SNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 145 VIAASSSNNLYVWDV-NSGR-VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL 202
+IA S +N++ W+V +SG+ + HT V V S S+ V +A+ D+T K+WDL
Sbjct: 57 LIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK-VFTASCDKTAKMWDL 115
Query: 203 HKGYCVNTIIFHSNCNALAF--SMDGQTIFSGHIDGNLRLWDIQTGKLL 249
+ + + + + + + +G D L+ WD ++ +
Sbjct: 116 SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM 164
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 220 LAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNI--ILTSGR 277
+ +S DG +F+ D ++WD+ + + + ++A H A V +I ++ N ++T
Sbjct: 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAI-QIAQHD-APVKTIHWIKAPNYSCVMTGSW 149
Query: 278 DNLHNLFDIRS 288
D +D RS
Sbjct: 150 DKTLKFWDTRS 160
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 316 SYVAAGSADGSVYIWSI--SKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
+++ AGS V W + S I + + HT PVL WS G + +A + +W
Sbjct: 55 NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 12/171 (7%)
Query: 99 NSARLIS-GGQDKSIKLWDTNTGS---LSSTLYGCLGSVLD-LAITHDNRSVIAASSSNN 153
+ +RLI+ DKS+ ++D + S L C + ++I D+ +VI A +
Sbjct: 113 DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGD 172
Query: 154 LYVWDVNS----GRVRHTLTGHTDKVCAVDVSKISSRH--VVSAAYDRTLKVWDLHKGYC 207
+Y D+NS + + GH + V + K S H ++++ D +K+ + +
Sbjct: 173 VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI 232
Query: 208 VNTIIF-HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL 257
V+ +F H + + + S D + WD +TGK LS +SL
Sbjct: 233 VDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSL 283
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 313 PDESYVAAGSADGSVYIWSISKA-------DIVRTLKEHTAPVLSCSWSGLGKPLASADK 365
P S +AAGS D +V IW+ ++ D++ ++ H V +WS G LA+ +
Sbjct: 68 PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR 127
Query: 366 NGVVCVW 372
+ V +W
Sbjct: 128 DKSVWIW 134
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 312 SPDESYVAAGSADGSVYIWSISKA----DIVRTLKEHTAPVLSCSWSGLGKPLASADKNG 367
S D Y+A S D SV+IW ++ + + L+EH+ V W LAS+ +
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD 175
Query: 368 VVCVW 372
V +W
Sbjct: 176 TVRIW 180
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDL------- 136
I HE + + + L + +DKS+ +W+T+ S Y C+ SVL
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE---SGEEYECI-SVLQEHSQDVKH 158
Query: 137 AITHDNRSVIAASSSNN-LYVWD--VNSGRVRHTLTGHTDKVCAVDVSKISS-RHVVSAA 192
I H + +++A+SS ++ + +W + L GH V + D K + S +
Sbjct: 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS 218
Query: 193 YDRTLKVW 200
D T++VW
Sbjct: 219 DDSTVRVW 226
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 23/175 (13%)
Query: 86 AHEGGCASILFEYNSARLISGGQDKSIKLW-------DTNTGSLSSTLYGCLGSVLDLAI 138
AH+ S+ + +++ L +G D ++ +W T L + + G V +A
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 139 THDNRSVIAASSSNNLYVWDVNSGRVRH----TLTGHTDKVCAVDVSKISSRHVVSAAYD 194
++D + S ++++W+ + + L H+ V V + S + S++YD
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV-IWHPSEALLASSSYD 174
Query: 195 RTLKVWDLHKGY-----CVNTIIFHSNCNALAFSMDGQTIF---SGHIDGNLRLW 241
T+++W K Y CV + H + + +F SG D +R+W
Sbjct: 175 DTVRIW---KDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
>pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
pdb|1FLG|B Chain B, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
Length = 582
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 12/142 (8%)
Query: 206 YCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISL 265
Y + + L + ++ H+ G+LR D +GK++ E H + + L
Sbjct: 437 YWTEEVSYTKGSAYLGMGFRIKRMYDDHV-GSLRAMDPVSGKVVWEHKEH--LPLWAGVL 493
Query: 266 SRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVAS---NWSRSCISPDESYVAAG- 321
+ +GN++ T D FD +S + + TG+ + S W + E Y+
Sbjct: 494 ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ-TGSGIVSPPITWEQDG----EQYLGVTV 548
Query: 322 SADGSVYIWSISKADIVRTLKE 343
G+V +W AD+ R + +
Sbjct: 549 GYGGAVPLWGGDMADLTRPVAQ 570
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 219 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 255
+L+F+ G+T+ S DG LR WD++T + ++ + H
Sbjct: 296 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 219 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 255
+L+F+ G+T+ S DG LR WD++T + ++ + H
Sbjct: 306 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 342
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 112/301 (37%), Gaps = 38/301 (12%)
Query: 85 NAHEGGCASILFEYNSARLISGGQDKSIKLWDT--NTGSLSSTLYGCLGSVLDLAITHDN 142
NAH + +Y RL + DK+IK+++ T L TL G G V + H
Sbjct: 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 67
Query: 143 RSVIAASSSNN--LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
I AS S + + +W +GR V AV + ++S Y L V
Sbjct: 68 FGTILASCSYDGKVLIWKEENGRWSQI------AVHAVHSASVNSVQWAPHEYGPLLLV- 120
Query: 201 DLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAV 260
V+ + F N +D I N W T + E H
Sbjct: 121 -ASSDGKVSVVEFKENGTTSPIIIDAHA-----IGVNSASWAPAT---IEEDGEH----- 166
Query: 261 TSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI-SPD---ES 316
+ ++ +T G DNL ++ S L +T S+W R SP S
Sbjct: 167 ---NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG-HSDWVRDVAWSPTVLLRS 222
Query: 317 YVAAGSADGSVYIWSI--SKADIVRT-LKEHTAP--VLSCSWSGLGKPLASADKNGVVCV 371
Y+A+ S D + IW+ + +T LKE P + SWS G LA + + V +
Sbjct: 223 YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 282
Query: 372 W 372
W
Sbjct: 283 W 283
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 112/301 (37%), Gaps = 38/301 (12%)
Query: 85 NAHEGGCASILFEYNSARLISGGQDKSIKLWDT--NTGSLSSTLYGCLGSVLDLAITHDN 142
NAH + +Y R+ + DK+IK+++ T L TL G G V + H
Sbjct: 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 143 RSVIAASSSNN--LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
I AS S + + +W +GR V AV + ++S Y L V
Sbjct: 66 FGTILASCSYDGKVMIWKEENGRWSQI------AVHAVHSASVNSVQWAPHEYGPMLLV- 118
Query: 201 DLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAV 260
V+ + F N +D I N W T + E H
Sbjct: 119 -ASSDGKVSVVEFKENGTTSPIIIDAHAIGV-----NSASWAPAT---IEEDGEH----- 164
Query: 261 TSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI-SPD---ES 316
+ ++ +T G DNL ++ S L +T S+W R SP S
Sbjct: 165 ---NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG-HSDWVRDVAWSPTVLLRS 220
Query: 317 YVAAGSADGSVYIWSI--SKADIVRT-LKEHTAP--VLSCSWSGLGKPLASADKNGVVCV 371
Y+A+ S D + IW+ + +T LKE P + SWS G LA + + V +
Sbjct: 221 YMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280
Query: 372 W 372
W
Sbjct: 281 W 281
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 112/301 (37%), Gaps = 38/301 (12%)
Query: 85 NAHEGGCASILFEYNSARLISGGQDKSIKLWDT--NTGSLSSTLYGCLGSVLDLAITHDN 142
NAH + +Y RL + DK+IK+++ T L TL G G V + H
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 143 RSVIAASSSNN--LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
I AS S + + +W +GR V AV + ++S Y L V
Sbjct: 66 FGTILASCSYDGKVLIWKEENGRWSQI------AVHAVHSASVNSVQWAPHEYGPLLLV- 118
Query: 201 DLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAV 260
V+ + F N +D I N W T + E H
Sbjct: 119 -ASSDGKVSVVEFKENGTTSPIIIDAHAIGV-----NSASWAPAT---IEEDGEH----- 164
Query: 261 TSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI-SPD---ES 316
+ ++ +T G DNL ++ S L +T S+W R SP S
Sbjct: 165 ---NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG-HSDWVRDVAWSPTVLLRS 220
Query: 317 YVAAGSADGSVYIWSI--SKADIVRT-LKEHTAP--VLSCSWSGLGKPLASADKNGVVCV 371
Y+A+ S D + IW+ + +T LKE P + SWS G LA + + V +
Sbjct: 221 YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280
Query: 372 W 372
W
Sbjct: 281 W 281
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 85 NAHEGGCASILFEYNSARLISGGQDKSIKLWDT--NTGSLSSTLYGCLGSVLDLAITHDN 142
NAH + +Y RL + DK+IK+++ T L TL G G V + H
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 143 RSVIAASSSNN--LYVWDVNSGR 163
I AS S + + +W +GR
Sbjct: 66 FGTILASCSYDGKVLIWKEENGR 88
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 207 CVNTIIFHSNC-NALAF-SMDGQTIFSGHIDGNLRLWDIQTGKLLS---EVAAHSLAAVT 261
C+ + H N N L F D + S D LRLW+IQT L++ V H V
Sbjct: 143 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR-DEVL 201
Query: 262 SISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS 312
S G I++ G D+ L+ I S + +++ + + + +R IS
Sbjct: 202 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS 252
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 207 CVNTIIFHSNC-NALAF-SMDGQTIFSGHIDGNLRLWDIQTGKLLS---EVAAHSLAAVT 261
C+ + H N N L F D + S D LRLW+IQT L++ V H V
Sbjct: 107 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR-DEVL 165
Query: 262 SISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS 312
S G I++ G D+ L+ I S + +++ + + + +R IS
Sbjct: 166 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS 216
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 207 CVNTIIFHSNC-NALAF-SMDGQTIFSGHIDGNLRLWDIQTGKLLS---EVAAHSLAAVT 261
C+ + H N N L F D + S D LRLW+IQT L++ V H V
Sbjct: 106 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR-DEVL 164
Query: 262 SISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS 312
S G I++ G D+ L+ I S + +++ + + + +R IS
Sbjct: 165 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS 215
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 207 CVNTIIFHSNC-NALAF-SMDGQTIFSGHIDGNLRLWDIQTGKLLS---EVAAHSLAAVT 261
C+ + H N N L F D + S D LRLW+IQT L++ V H V
Sbjct: 102 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR-DEVL 160
Query: 262 SISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS 312
S G I++ G D+ L+ I S + +++ + + + +R IS
Sbjct: 161 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS 211
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 207 CVNTIIFHSNC-NALAF-SMDGQTIFSGHIDGNLRLWDIQTGKLLS---EVAAHSLAAVT 261
C+ + H N N L F D + S D LRLW+IQT L++ V H V
Sbjct: 106 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR-DEVL 164
Query: 262 SISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS 312
S G I++ G D+ L+ I S + +++ + + + +R IS
Sbjct: 165 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS 215
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 179 DVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC--------NALAFSMDGQTIF 230
D++ + R ++ A+ +++W+L + T+I C + ++ G
Sbjct: 87 DLTWVGERGILVASDSGAVELWELDEN---ETLIVSKFCKYEHDDIVSTVSVLSSGTQAV 143
Query: 231 SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLS-RSGNIILTSGRDNLHNLFDIR 287
SG D +++WD+ +LS AH+ A VT ++ S ++ L+ DN L+D R
Sbjct: 144 SGSKDICIKVWDLAQQVVLSSYRAHA-AQVTCVAASPHKDSVFLSCSEDNRILLWDTR 200
>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Proto-Oncogene Nup214CAN
Length = 434
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 316 SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
S VA ADGS+ + +++ V T V S WS GK LA +NG V +
Sbjct: 163 SMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQY 219
>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 405
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 315 ESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVV 369
S VA ADGS+ + +++ V T V S WS GK LA +NG V
Sbjct: 162 PSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTV 216
>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|C Chain C, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 450
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 316 SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372
S VA ADGS+ + +++ V T V S WS GK LA +NG V +
Sbjct: 163 SMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQY 219
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 86 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS--LSSTLYGCLGSVLDLAITHDNR 143
+HE +Y RL + D+S+K++D G L + L G G V +A H
Sbjct: 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMY 70
Query: 144 SVIAASSSNN--LYVWDVNSGRVR--HTLTGHTDKVCAV 178
I AS S + + +W +G H GH V +V
Sbjct: 71 GNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSV 109
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 110/301 (36%), Gaps = 38/301 (12%)
Query: 85 NAHEGGCASILFEYNSARLISGGQDKSIKLWDT--NTGSLSSTLYGCLGSVLDLAITHDN 142
NAH + +Y R + DK+IK+++ T L TL G G V + H
Sbjct: 6 NAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 143 RSVIAASSSNN--LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200
I AS S + + +W +GR V AV + ++S Y L V
Sbjct: 66 FGTILASCSYDGKVXIWKEENGRWSQI------AVHAVHSASVNSVQWAPHEYGPXLLV- 118
Query: 201 DLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAV 260
V+ + F N +D I N W T + E H
Sbjct: 119 -ASSDGKVSVVEFKENGTTSPIIIDAHAIGV-----NSASWAPAT---IEEDGEH----- 164
Query: 261 TSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI-SPD---ES 316
+ ++ +T G DNL ++ S L +T S+W R SP S
Sbjct: 165 ---NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG-HSDWVRDVAWSPTVLLRS 220
Query: 317 YVAAGSADGSVYIWSI--SKADIVRT-LKEHTAP--VLSCSWSGLGKPLASADKNGVVCV 371
Y A+ S D + IW+ + +T LKE P + SWS G LA + + V +
Sbjct: 221 YXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280
Query: 372 W 372
W
Sbjct: 281 W 281
>pdb|3SPT|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Acetyl Coenzyme A And
Uridine-Diphosphate-N-Acetylglucosamine
pdb|3ST8|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Coenzyme A, Glucosamine 1-Phosphate And
Uridine-Diphosphate-N- Acetylglucosamine
Length = 501
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 10/66 (15%)
Query: 225 DGQTIFSGHIDGNLRLWD----IQTGKLLSE-----VAAHSLAAVTSISLSRS-GNIILT 274
DGQT+ + H+D + + +Q +L SE VAAH LA VT + + + ++ +T
Sbjct: 226 DGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVT 285
Query: 275 SGRDNL 280
GRD +
Sbjct: 286 IGRDTV 291
>pdb|3D8V|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine
pdb|3D98|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis,
Ligand-Free Form
pdb|3DJ4|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine.
pdb|3DK5|A Chain A, Crystal Structure Of Apo-Glmu From Mycobacterium
Tuberculosis
Length = 495
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 10/66 (15%)
Query: 225 DGQTIFSGHIDGNLRLWD----IQTGKLLSE-----VAAHSLAAVTSISLSRS-GNIILT 274
DGQT+ + H+D + + +Q +L SE VAAH LA VT + + + ++ +T
Sbjct: 220 DGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVT 279
Query: 275 SGRDNL 280
GRD +
Sbjct: 280 IGRDTV 285
>pdb|3FOQ|A Chain A, Crystal Structure Of N-Acetylglucosamine-1-Phosphate
Uridyltransferase (Glmu) From Mycobacterium Tuberculosis
In A Cubic Space Group
Length = 503
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 10/66 (15%)
Query: 225 DGQTIFSGHIDGNLRLWD----IQTGKLLSE-----VAAHSLAAVTSISLSRS-GNIILT 274
DGQT+ + H+D + + +Q +L SE VAAH LA VT + + + ++ +T
Sbjct: 228 DGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVT 287
Query: 275 SGRDNL 280
GRD +
Sbjct: 288 IGRDTV 293
>pdb|1EJ6|D Chain D, Reovirus Core
pdb|1EJ6|E Chain E, Reovirus Core
pdb|2CSE|X Chain X, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|Y Chain Y, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|Z Chain Z, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 418
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 122 LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG------RVRHTLTGHTDKV 175
LSSTL GCL S L + DN SV A S N++ W +G +VR +T D++
Sbjct: 287 LSSTLTGCLCSGSQLPLI-DNNSVPAV--SRNIHGWTGRAGNQLHGFQVRRMVTEFCDRL 343
Query: 176 CAVDVSKISSRHVVSAAYDRTLKV 199
V + ++ + A D+T +
Sbjct: 344 RRDGVMTQAQQNQIEALADQTQQF 367
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 133 VLDLAITHDNRSVIAASSSNNLYVW----DVNSGRVRHTLTGHTDKVCAVD-VSKISSRH 187
V D+ R V SS ++ V+ D ++ + + H + A+D S R
Sbjct: 12 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRI 71
Query: 188 VVSAAYDRTLKVWD 201
+ SA+YD+T+K+W+
Sbjct: 72 IASASYDKTVKLWE 85
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 133 VLDLAITHDNRSVIAASSSNNLYVW----DVNSGRVRHTLTGHTDKVCAVD-VSKISSRH 187
V D+ R V SS ++ V+ D ++ + + H + A+D S R
Sbjct: 14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRI 73
Query: 188 VVSAAYDRTLKVWD 201
+ SA+YD+T+K+W+
Sbjct: 74 IASASYDKTVKLWE 87
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 133 VLDLAITHDNRSVIAASSSNNLYVW----DVNSGRVRHTLTGHTDKVCAVD-VSKISSRH 187
V D+ R V SS ++ V+ D ++ + + H + A+D S R
Sbjct: 14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRI 73
Query: 188 VVSAAYDRTLKVWD 201
+ SA+YD+T+K+W+
Sbjct: 74 IASASYDKTVKLWE 87
>pdb|2QKX|A Chain A, N-Acetyl Glucosamine 1-Phosphate Uridyltransferase From
Mycobacterium Tuberculosis Complex With N-Acetyl
Glucosamine 1-Phosphate
Length = 391
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 10/66 (15%)
Query: 225 DGQTIFSGHIDGNLRLWD----IQTGKLLSE-----VAAHSLAAVTSISLSRS-GNIILT 274
DGQT+ + H+D + + +Q +L SE VAAH LA VT + + + ++ +T
Sbjct: 222 DGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVT 281
Query: 275 SGRDNL 280
GRD +
Sbjct: 282 IGRDTV 287
>pdb|3CNU|A Chain A, Crystal Structure Of The Predicted Coding Region Af_1534
From Archaeoglobus Fulgidus
Length = 116
Score = 28.9 bits (63), Expect = 5.3, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 30 LNEANALYEDMIDRLKASGLEKLAKQQV--DGVVRRSEEGAEFFAESTVPSTCKHKINAH 87
++EA L + M D ++ E++ K+ GVV+ +G EF+ E TC+ K H
Sbjct: 1 MSEAKELIKKMCDLQNSN--EEIQKEMAGWSGVVQYKLDGEEFYVEYKSDGTCEFKEGVH 58
>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3V1Y|O Chain O, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|A Chain A, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|B Chain B, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|C Chain C, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
Length = 337
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 64 SEEGAEFFAESTVPSTCKHKINAH-EGGCASILFEYNS--ARLISGGQDKSIKLWDTNTG 120
+E GAE+ EST T K K AH +GG ++ S A + G ++ D +
Sbjct: 90 AEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTSDIDIV 149
Query: 121 SLSSTLYGCLGSVLDLAITHDNRSVI 146
S +S CL + + HDN +I
Sbjct: 150 SNASCTTNCLAPL--AKVIHDNFGII 173
>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
Length = 336
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 64 SEEGAEFFAESTVPSTCKHKINAH-EGGCASILFEYNS--ARLISGGQDKSIKLWDTNTG 120
+E GAE+ EST T K K AH +GG ++ S A + G ++ D +
Sbjct: 89 AEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTSDIDIV 148
Query: 121 SLSSTLYGCLGSVLDLAITHDNRSVI 146
S +S CL + + HDN +I
Sbjct: 149 SNASCTTNCLAPL--AKVIHDNFGII 172
>pdb|3U14|A Chain A, Structure Of D50a-Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Inulin
pdb|3U14|B Chain B, Structure Of D50a-Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Inulin
Length = 535
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 13/51 (25%)
Query: 193 YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGN-LRLWD 242
YD+T K+W L+ F N NA A+ GQ ++ GH N L WD
Sbjct: 56 YDKTAKLWHLY---------FQYNPNATAW---GQPLYWGHATSNDLVHWD 94
>pdb|3U75|A Chain A, Structure Of E230a-Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Fructosylnystose
pdb|3U75|B Chain B, Structure Of E230a-Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Fructosylnystose
pdb|3U75|C Chain C, Structure Of E230a-Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Fructosylnystose
pdb|3U75|D Chain D, Structure Of E230a-Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Fructosylnystose
Length = 535
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 13/51 (25%)
Query: 193 YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGN-LRLWD 242
YD+T K+W L+ F N NA A+ GQ ++ GH N L WD
Sbjct: 56 YDKTAKLWHLY---------FQYNPNATAW---GQPLYWGHATSNDLVHWD 94
>pdb|3KF5|A Chain A, Structure Of Invertase From Schwanniomyces Occidentalis
pdb|3KF5|B Chain B, Structure Of Invertase From Schwanniomyces Occidentalis
Length = 512
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 13/51 (25%)
Query: 193 YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGN-LRLWD 242
YD+T K+W L+ F N NA A+ GQ ++ GH N L WD
Sbjct: 33 YDKTAKLWHLY---------FQYNPNATAW---GQPLYWGHATSNDLVHWD 71
>pdb|3KF3|A Chain A, Structure Of Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Fructose
pdb|3KF3|B Chain B, Structure Of Fructofuranosidase From Schwanniomyces
Occidentalis Complexed With Fructose
Length = 509
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 13/51 (25%)
Query: 193 YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGN-LRLWD 242
YD+T K+W L+ F N NA A+ GQ ++ GH N L WD
Sbjct: 30 YDKTAKLWHLY---------FQYNPNATAW---GQPLYWGHATSNDLVHWD 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,792,487
Number of Sequences: 62578
Number of extensions: 420625
Number of successful extensions: 2756
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1337
Number of HSP's gapped (non-prelim): 486
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)