Query 017314
Match_columns 373
No_of_seqs 363 out of 2895
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 07:28:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 4.1E-56 8.8E-61 373.1 26.9 291 77-373 104-479 (480)
2 KOG0288 WD40 repeat protein Ti 100.0 1.5E-55 3.2E-60 373.0 21.6 320 47-373 136-459 (459)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-54 3.6E-59 367.7 26.9 282 86-373 173-458 (459)
4 KOG0286 G-protein beta subunit 100.0 7.4E-50 1.6E-54 324.7 36.0 289 80-373 47-343 (343)
5 KOG0265 U5 snRNP-specific prot 100.0 9.7E-47 2.1E-51 307.6 27.9 290 81-371 40-334 (338)
6 KOG0315 G-protein beta subunit 100.0 3.6E-46 7.8E-51 296.8 28.6 268 100-373 10-286 (311)
7 KOG0279 G protein beta subunit 100.0 9.6E-46 2.1E-50 299.0 31.1 285 80-373 7-311 (315)
8 KOG0272 U4/U6 small nuclear ri 100.0 3E-47 6.5E-52 323.5 18.9 247 79-331 208-458 (459)
9 KOG0295 WD40 repeat-containing 100.0 9.8E-46 2.1E-50 308.9 26.6 289 79-373 99-404 (406)
10 KOG0293 WD40 repeat-containing 100.0 1.2E-44 2.6E-49 306.8 27.7 296 72-373 208-511 (519)
11 KOG0271 Notchless-like WD40 re 100.0 3.6E-45 7.8E-50 307.3 23.5 246 79-331 148-479 (480)
12 KOG0285 Pleiotropic regulator 100.0 3.1E-44 6.8E-49 299.3 25.1 289 77-373 140-437 (460)
13 KOG0282 mRNA splicing factor [ 100.0 4E-45 8.6E-50 315.6 19.5 300 73-373 199-503 (503)
14 KOG0266 WD40 repeat-containing 100.0 1.7E-42 3.7E-47 322.2 33.8 291 81-373 151-452 (456)
15 KOG0286 G-protein beta subunit 100.0 3E-42 6.4E-47 280.5 28.8 264 54-331 72-343 (343)
16 KOG0316 Conserved WD40 repeat- 100.0 4.4E-42 9.5E-47 271.5 26.5 284 75-366 4-291 (307)
17 KOG0279 G protein beta subunit 100.0 4.1E-42 9E-47 278.0 26.9 278 48-333 27-313 (315)
18 KOG0273 Beta-transducin family 100.0 1.7E-41 3.7E-46 292.1 28.5 298 67-373 158-480 (524)
19 KOG0263 Transcription initiati 100.0 8.2E-42 1.8E-46 311.3 27.5 285 73-363 363-703 (707)
20 cd00200 WD40 WD40 domain, foun 100.0 5.9E-40 1.3E-44 287.9 37.2 286 82-373 3-289 (289)
21 KOG0284 Polyadenylation factor 100.0 7.9E-43 1.7E-47 295.4 17.5 282 86-373 94-378 (464)
22 KOG0315 G-protein beta subunit 100.0 1.2E-40 2.5E-45 265.5 28.4 287 51-354 12-309 (311)
23 KOG0273 Beta-transducin family 100.0 3.8E-40 8.2E-45 283.8 30.7 276 88-372 235-520 (524)
24 KOG0645 WD40 repeat protein [G 100.0 4.2E-39 9.2E-44 259.5 32.6 281 80-373 6-309 (312)
25 PLN00181 protein SPA1-RELATED; 100.0 3.5E-39 7.6E-44 321.0 39.3 283 84-373 479-791 (793)
26 KOG0318 WD40 repeat stress pro 100.0 2.5E-38 5.3E-43 276.1 33.8 292 76-373 178-600 (603)
27 KOG0319 WD40-repeat-containing 100.0 1.1E-39 2.4E-44 294.8 24.3 308 51-373 119-575 (775)
28 KOG0281 Beta-TrCP (transducin 100.0 5.7E-41 1.2E-45 279.0 14.3 266 88-373 197-475 (499)
29 KOG0278 Serine/threonine kinas 100.0 2E-40 4.4E-45 264.3 16.6 279 85-373 11-295 (334)
30 KOG0296 Angio-associated migra 100.0 2.8E-38 6.1E-43 264.4 29.7 285 81-372 57-395 (399)
31 KOG0263 Transcription initiati 100.0 1.5E-39 3.2E-44 296.6 22.8 243 125-373 373-647 (707)
32 KOG0291 WD40-repeat-containing 100.0 1E-37 2.2E-42 282.6 34.3 288 79-373 298-610 (893)
33 KOG0643 Translation initiation 100.0 1.3E-38 2.7E-43 256.3 24.5 282 83-372 5-314 (327)
34 KOG0319 WD40-repeat-containing 100.0 1.4E-38 2.9E-43 287.7 25.2 286 82-373 317-617 (775)
35 KOG0313 Microtubule binding pr 100.0 4E-38 8.7E-43 264.7 23.7 301 13-373 67-416 (423)
36 KOG0275 Conserved WD40 repeat- 100.0 5.1E-39 1.1E-43 265.3 17.9 285 86-373 211-507 (508)
37 KOG1446 Histone H3 (Lys4) meth 100.0 3.1E-36 6.6E-41 248.4 33.6 284 84-372 10-300 (311)
38 KOG0276 Vesicle coat complex C 100.0 1.4E-37 3E-42 276.3 27.0 285 81-371 6-295 (794)
39 KOG0291 WD40-repeat-containing 100.0 1.4E-36 3E-41 275.3 33.4 285 83-373 260-548 (893)
40 KOG0306 WD40-repeat-containing 100.0 6.7E-37 1.5E-41 277.2 28.2 283 82-373 367-662 (888)
41 KOG0285 Pleiotropic regulator 100.0 9.5E-38 2.1E-42 260.6 20.8 243 123-373 144-387 (460)
42 KOG0295 WD40 repeat-containing 100.0 5.8E-38 1.2E-42 262.5 19.2 251 121-373 99-362 (406)
43 KOG0318 WD40 repeat stress pro 100.0 1.2E-35 2.6E-40 259.3 32.1 287 81-373 52-348 (603)
44 KOG0283 WD40 repeat-containing 100.0 6E-37 1.3E-41 281.8 25.2 249 82-334 260-577 (712)
45 KOG0772 Uncharacterized conser 100.0 3.8E-36 8.2E-41 261.8 26.6 297 74-372 153-484 (641)
46 KOG0266 WD40 repeat-containing 100.0 5.7E-36 1.2E-40 278.5 28.5 250 80-333 195-454 (456)
47 KOG0640 mRNA cleavage stimulat 100.0 1.3E-35 2.7E-40 243.8 25.5 295 77-372 101-423 (430)
48 KOG1407 WD40 repeat protein [F 100.0 2.6E-35 5.7E-40 236.5 26.4 277 82-366 14-293 (313)
49 KOG0274 Cdc4 and related F-box 100.0 2.7E-35 5.9E-40 273.5 30.4 270 87-373 207-480 (537)
50 KOG0292 Vesicle coat complex C 100.0 1.1E-35 2.5E-40 273.4 26.5 279 85-369 6-316 (1202)
51 KOG0284 Polyadenylation factor 100.0 5.1E-37 1.1E-41 260.2 14.9 245 83-333 133-380 (464)
52 KOG0281 Beta-TrCP (transducin 100.0 5.2E-37 1.1E-41 255.5 14.5 243 78-338 227-482 (499)
53 KOG0299 U3 snoRNP-associated p 100.0 1.4E-34 3.1E-39 249.0 29.4 349 4-367 66-448 (479)
54 KOG0289 mRNA splicing factor [ 100.0 1.6E-34 3.4E-39 246.9 29.1 279 89-372 220-503 (506)
55 KOG0265 U5 snRNP-specific prot 100.0 2.5E-35 5.5E-40 241.0 22.5 244 123-373 40-294 (338)
56 KOG0306 WD40-repeat-containing 100.0 3.4E-34 7.3E-39 259.8 30.0 309 52-373 80-578 (888)
57 PTZ00421 coronin; Provisional 100.0 2E-33 4.4E-38 260.7 34.0 266 88-356 20-314 (493)
58 KOG0277 Peroxisomal targeting 100.0 2.5E-34 5.4E-39 230.0 21.1 277 92-373 12-307 (311)
59 KOG0278 Serine/threonine kinas 100.0 3.4E-35 7.4E-40 234.5 15.2 251 79-338 50-302 (334)
60 KOG0282 mRNA splicing factor [ 100.0 2.8E-35 6.1E-40 254.7 15.5 248 121-373 205-460 (503)
61 KOG0316 Conserved WD40 repeat- 100.0 4.8E-34 1E-38 226.0 20.9 241 123-373 10-255 (307)
62 KOG0647 mRNA export protein (c 100.0 2.9E-33 6.2E-38 229.1 25.8 276 86-364 25-312 (347)
63 KOG0276 Vesicle coat complex C 100.0 2.3E-33 5E-38 249.6 26.5 243 81-328 48-294 (794)
64 PLN00181 protein SPA1-RELATED; 100.0 9.7E-33 2.1E-37 274.9 34.2 257 109-373 457-736 (793)
65 KOG0292 Vesicle coat complex C 100.0 2.5E-33 5.3E-38 258.1 27.3 264 54-333 26-321 (1202)
66 PTZ00420 coronin; Provisional 100.0 3.8E-32 8.2E-37 253.4 35.3 249 106-357 50-318 (568)
67 KOG0645 WD40 repeat protein [G 100.0 1.1E-32 2.3E-37 222.6 26.8 269 51-333 29-311 (312)
68 KOG1407 WD40 repeat protein [F 100.0 1.8E-33 4E-38 225.9 21.4 242 124-371 14-257 (313)
69 cd00200 WD40 WD40 domain, foun 100.0 6.1E-32 1.3E-36 236.9 31.6 244 124-373 3-247 (289)
70 KOG0268 Sof1-like rRNA process 100.0 3.1E-34 6.8E-39 240.0 15.8 280 81-373 59-343 (433)
71 KOG0283 WD40 repeat-containing 100.0 6.3E-33 1.4E-37 255.4 23.3 247 123-373 259-574 (712)
72 KOG0274 Cdc4 and related F-box 100.0 3.9E-32 8.4E-37 252.5 28.1 248 80-342 240-491 (537)
73 KOG0310 Conserved WD40 repeat- 100.0 4.3E-32 9.3E-37 235.4 25.4 274 89-371 27-305 (487)
74 KOG0305 Anaphase promoting com 100.0 8.3E-32 1.8E-36 241.8 27.3 269 94-373 183-459 (484)
75 KOG0310 Conserved WD40 repeat- 100.0 1.1E-31 2.4E-36 232.8 24.8 242 84-332 64-308 (487)
76 KOG1036 Mitotic spindle checkp 100.0 4.9E-31 1.1E-35 216.8 27.2 273 87-365 12-294 (323)
77 KOG0300 WD40 repeat-containing 100.0 5E-32 1.1E-36 223.4 21.4 287 79-373 139-474 (481)
78 KOG0973 Histone transcription 100.0 3.2E-31 7E-36 250.0 28.6 281 87-372 12-352 (942)
79 KOG0294 WD40 repeat-containing 100.0 5.2E-31 1.1E-35 217.1 25.5 264 80-353 35-305 (362)
80 PTZ00421 coronin; Provisional 100.0 4.5E-30 9.7E-35 238.4 34.6 212 83-295 70-298 (493)
81 KOG1446 Histone H3 (Lys4) meth 100.0 3.3E-30 7.2E-35 212.8 29.1 246 123-373 7-260 (311)
82 KOG0277 Peroxisomal targeting 100.0 1.7E-31 3.6E-36 213.9 20.0 240 88-332 60-308 (311)
83 KOG1273 WD40 repeat protein [G 100.0 2.5E-30 5.4E-35 213.1 25.0 289 77-373 14-320 (405)
84 KOG0296 Angio-associated migra 100.0 3E-30 6.6E-35 216.4 25.9 246 80-333 98-398 (399)
85 KOG0301 Phospholipase A2-activ 100.0 2E-30 4.4E-35 233.5 25.4 276 80-373 6-286 (745)
86 KOG2096 WD40 repeat protein [G 100.0 5.9E-30 1.3E-34 211.2 26.0 285 82-371 80-398 (420)
87 PTZ00420 coronin; Provisional 100.0 3.5E-29 7.6E-34 233.6 34.5 224 148-373 50-291 (568)
88 KOG0294 WD40 repeat-containing 100.0 5.4E-30 1.2E-34 211.2 25.1 239 123-373 36-279 (362)
89 KOG0308 Conserved WD40 repeat- 100.0 2.9E-31 6.4E-36 237.3 18.3 275 93-372 29-324 (735)
90 KOG0293 WD40 repeat-containing 100.0 6.9E-31 1.5E-35 223.4 19.5 251 78-334 259-514 (519)
91 KOG0641 WD40 repeat protein [G 100.0 1.3E-28 2.7E-33 194.4 30.8 283 87-373 31-347 (350)
92 KOG0288 WD40 repeat protein Ti 100.0 5.3E-31 1.2E-35 224.1 18.2 311 5-330 104-458 (459)
93 KOG0313 Microtubule binding pr 100.0 3.5E-30 7.6E-35 217.0 21.4 235 86-373 103-374 (423)
94 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 3.7E-28 8E-33 215.9 34.4 268 101-373 2-277 (300)
95 KOG0643 Translation initiation 100.0 5.4E-29 1.2E-33 200.9 25.4 233 125-364 5-250 (327)
96 KOG0305 Anaphase promoting com 100.0 1.9E-29 4E-34 226.7 25.3 240 87-335 216-463 (484)
97 KOG0275 Conserved WD40 repeat- 100.0 9.9E-31 2.1E-35 216.4 15.2 243 83-331 258-507 (508)
98 KOG0268 Sof1-like rRNA process 100.0 5.3E-30 1.2E-34 214.8 17.5 269 48-335 78-347 (433)
99 KOG4283 Transcription-coupled 100.0 2.4E-28 5.1E-33 199.8 25.0 286 84-372 39-362 (397)
100 KOG1332 Vesicle coat complex C 100.0 1.6E-29 3.5E-34 201.4 17.1 246 85-373 8-284 (299)
101 KOG0321 WD40 repeat-containing 100.0 7.4E-29 1.6E-33 221.6 22.4 274 100-373 64-389 (720)
102 KOG0308 Conserved WD40 repeat- 100.0 3.5E-29 7.6E-34 224.1 19.3 314 51-373 39-391 (735)
103 KOG0641 WD40 repeat protein [G 100.0 1.8E-27 3.9E-32 187.9 26.6 246 81-333 82-349 (350)
104 KOG1408 WD40 repeat protein [F 100.0 1E-28 2.2E-33 223.3 21.9 287 85-373 366-711 (1080)
105 KOG0289 mRNA splicing factor [ 100.0 1.2E-28 2.7E-33 211.0 21.0 250 78-332 251-505 (506)
106 KOG1539 WD repeat protein [Gen 100.0 1.1E-27 2.5E-32 219.9 27.0 286 82-373 238-604 (910)
107 KOG0301 Phospholipase A2-activ 100.0 5.4E-28 1.2E-32 218.0 23.0 259 51-333 27-288 (745)
108 KOG0264 Nucleosome remodeling 100.0 5E-28 1.1E-32 208.6 21.4 255 86-373 122-402 (422)
109 KOG2055 WD40 repeat protein [G 100.0 4.4E-27 9.6E-32 203.0 25.1 285 88-373 213-510 (514)
110 KOG0973 Histone transcription 100.0 2.6E-27 5.6E-32 223.8 24.9 252 80-336 61-358 (942)
111 KOG1274 WD40 repeat protein [G 100.0 1.5E-26 3.4E-31 214.7 29.4 278 85-371 10-296 (933)
112 KOG0640 mRNA cleavage stimulat 100.0 6.7E-28 1.5E-32 198.5 18.2 247 124-373 106-381 (430)
113 KOG0650 WD40 repeat nucleolar 100.0 7E-27 1.5E-31 207.6 25.0 290 76-373 388-733 (733)
114 KOG0639 Transducin-like enhanc 100.0 1.6E-27 3.5E-32 207.7 19.7 277 86-372 417-701 (705)
115 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 4.1E-25 8.8E-30 196.3 35.9 266 80-355 23-300 (300)
116 KOG0646 WD40 repeat protein [G 100.0 3.1E-27 6.7E-32 204.2 21.1 241 88-357 81-331 (476)
117 KOG0267 Microtubule severing p 100.0 4.5E-29 9.8E-34 225.8 8.9 238 82-325 22-260 (825)
118 KOG0267 Microtubule severing p 100.0 1.1E-28 2.3E-33 223.4 10.3 253 102-366 6-259 (825)
119 KOG2445 Nuclear pore complex c 100.0 5E-26 1.1E-30 187.2 24.9 261 85-373 10-316 (361)
120 KOG0647 mRNA export protein (c 100.0 2.7E-26 5.7E-31 188.4 23.0 238 129-373 26-279 (347)
121 KOG1063 RNA polymerase II elon 100.0 3E-26 6.6E-31 206.7 25.4 331 36-373 189-646 (764)
122 KOG0299 U3 snoRNP-associated p 100.0 1.3E-26 2.9E-31 200.0 21.5 239 85-330 199-453 (479)
123 KOG0269 WD40 repeat-containing 100.0 4.1E-27 8.9E-32 214.7 18.4 277 89-370 40-335 (839)
124 KOG0300 WD40 repeat-containing 99.9 8.5E-26 1.8E-30 186.7 22.3 259 101-373 125-426 (481)
125 KOG0639 Transducin-like enhanc 99.9 1.1E-26 2.5E-31 202.4 17.8 237 88-332 465-703 (705)
126 KOG1539 WD repeat protein [Gen 99.9 3.1E-25 6.6E-30 204.1 27.3 282 83-373 283-646 (910)
127 KOG1274 WD40 repeat protein [G 99.9 3.3E-25 7.1E-30 205.9 26.5 243 127-373 10-260 (933)
128 KOG1036 Mitotic spindle checkp 99.9 3.3E-25 7.2E-30 182.6 23.6 235 130-373 13-260 (323)
129 KOG0646 WD40 repeat protein [G 99.9 2.3E-25 5E-30 192.7 22.8 261 105-373 12-305 (476)
130 KOG2106 Uncharacterized conser 99.9 1E-23 2.2E-28 184.2 32.6 273 87-372 199-518 (626)
131 KOG2106 Uncharacterized conser 99.9 4.1E-24 9E-29 186.6 28.5 283 85-373 284-624 (626)
132 KOG4328 WD40 protein [Function 99.9 9E-25 2E-29 188.6 22.6 288 83-373 181-493 (498)
133 KOG0772 Uncharacterized conser 99.9 2.4E-25 5.1E-30 194.8 18.9 246 124-372 161-442 (641)
134 KOG0264 Nucleosome remodeling 99.9 6.4E-25 1.4E-29 189.5 19.3 207 80-287 169-404 (422)
135 KOG0269 WD40 repeat-containing 99.9 1.4E-25 3E-30 204.8 15.3 240 92-335 91-342 (839)
136 KOG2048 WD40 repeat protein [G 99.9 3.7E-23 7.9E-28 186.6 30.6 275 88-371 25-315 (691)
137 KOG0270 WD40 repeat-containing 99.9 8.6E-25 1.9E-29 188.1 19.2 234 100-338 192-454 (463)
138 KOG4283 Transcription-coupled 99.9 4.4E-24 9.5E-29 174.9 22.0 209 127-336 40-279 (397)
139 KOG0322 G-protein beta subunit 99.9 3.4E-25 7.4E-30 178.7 14.8 284 77-373 3-321 (323)
140 KOG4378 Nuclear protein COP1 [ 99.9 1.4E-24 3E-29 189.2 18.9 262 90-357 36-305 (673)
141 KOG1332 Vesicle coat complex C 99.9 2.2E-24 4.8E-29 172.2 18.2 231 50-286 24-285 (299)
142 KOG2919 Guanine nucleotide-bin 99.9 3.5E-23 7.6E-28 171.7 21.7 272 91-366 52-361 (406)
143 KOG0644 Uncharacterized conser 99.9 3E-25 6.6E-30 204.0 10.3 276 82-372 184-465 (1113)
144 KOG1408 WD40 repeat protein [F 99.9 1.4E-23 2.9E-28 190.3 19.9 244 87-334 458-714 (1080)
145 KOG1034 Transcriptional repres 99.9 1.2E-22 2.6E-27 168.9 22.7 288 83-373 33-381 (385)
146 KOG1063 RNA polymerase II elon 99.9 1.7E-22 3.7E-27 182.7 24.8 314 50-373 280-697 (764)
147 KOG0302 Ribosome Assembly prot 99.9 2.2E-23 4.9E-28 176.0 18.0 206 82-288 145-379 (440)
148 KOG4227 WD40 repeat protein [G 99.9 1.2E-22 2.6E-27 172.6 22.0 291 79-373 47-385 (609)
149 KOG0321 WD40 repeat-containing 99.9 3.8E-23 8.3E-28 185.3 20.0 273 82-359 94-431 (720)
150 KOG1273 WD40 repeat protein [G 99.9 9.7E-23 2.1E-27 168.5 19.6 235 133-372 26-277 (405)
151 COG2319 FOG: WD40 repeat [Gene 99.9 1.7E-20 3.6E-25 173.6 37.2 284 83-373 60-357 (466)
152 KOG2096 WD40 repeat protein [G 99.9 8.4E-23 1.8E-27 169.1 18.6 202 166-373 80-306 (420)
153 KOG0642 Cell-cycle nuclear pro 99.9 2E-23 4.3E-28 184.8 15.9 260 80-345 286-573 (577)
154 KOG0270 WD40 repeat-containing 99.9 9E-23 1.9E-27 175.8 19.2 227 141-373 191-447 (463)
155 KOG1538 Uncharacterized conser 99.9 3.8E-22 8.2E-27 179.8 22.7 269 90-372 14-290 (1081)
156 KOG2055 WD40 repeat protein [G 99.9 2.2E-22 4.7E-27 174.2 19.2 231 130-365 213-455 (514)
157 KOG1009 Chromatin assembly com 99.9 1.2E-21 2.6E-26 167.1 22.8 280 89-370 14-367 (434)
158 KOG2048 WD40 repeat protein [G 99.9 4.1E-21 9E-26 173.5 27.4 239 130-372 25-272 (691)
159 COG2319 FOG: WD40 repeat [Gene 99.9 1.8E-19 3.9E-24 166.6 38.2 286 79-373 146-440 (466)
160 KOG4328 WD40 protein [Function 99.9 8E-22 1.7E-26 170.5 19.3 250 121-372 177-447 (498)
161 KOG1034 Transcriptional repres 99.9 7.8E-22 1.7E-26 164.0 18.2 244 86-333 87-383 (385)
162 KOG1334 WD40 repeat protein [G 99.9 1.8E-22 3.8E-27 175.9 14.0 293 80-373 134-464 (559)
163 KOG0302 Ribosome Assembly prot 99.9 2E-21 4.4E-26 164.3 19.8 236 128-369 149-433 (440)
164 KOG0303 Actin-binding protein 99.9 2.4E-21 5.3E-26 164.7 19.0 230 123-356 74-320 (472)
165 KOG0307 Vesicle coat complex C 99.9 1.9E-22 4.2E-27 192.0 13.4 240 130-373 64-325 (1049)
166 KOG0307 Vesicle coat complex C 99.9 2.5E-22 5.4E-27 191.2 13.8 243 89-336 65-330 (1049)
167 KOG1188 WD40 repeat protein [G 99.9 3.5E-21 7.6E-26 161.0 18.0 270 101-373 41-344 (376)
168 PRK11028 6-phosphogluconolacto 99.9 2.7E-19 6E-24 161.1 30.7 268 103-373 5-302 (330)
169 KOG1445 Tumor-specific antigen 99.9 2.6E-20 5.6E-25 167.2 22.6 151 50-204 93-249 (1012)
170 KOG0642 Cell-cycle nuclear pro 99.9 2.3E-21 5E-26 171.8 15.5 244 125-373 289-559 (577)
171 KOG4378 Nuclear protein COP1 [ 99.9 1E-20 2.3E-25 165.2 18.8 259 106-373 8-278 (673)
172 KOG0303 Actin-binding protein 99.9 4.6E-20 1E-24 157.0 18.7 204 83-290 76-297 (472)
173 KOG1517 Guanine nucleotide bin 99.9 1.8E-19 4E-24 170.1 23.3 282 89-373 1065-1379(1387)
174 KOG1009 Chromatin assembly com 99.9 2.4E-19 5.3E-24 153.2 22.0 283 51-338 28-377 (434)
175 KOG1310 WD40 repeat protein [G 99.9 9.4E-20 2E-24 161.1 19.9 206 82-287 44-303 (758)
176 KOG0650 WD40 repeat nucleolar 99.8 2E-19 4.4E-24 160.5 21.3 243 123-372 393-677 (733)
177 KOG2445 Nuclear pore complex c 99.8 9E-19 1.9E-23 144.7 22.0 215 127-373 10-254 (361)
178 KOG1007 WD repeat protein TSSC 99.8 2.5E-18 5.5E-23 140.9 22.0 257 108-371 38-357 (370)
179 KOG1240 Protein kinase contain 99.8 4E-18 8.7E-23 163.5 25.6 293 81-373 1041-1431(1431)
180 KOG2919 Guanine nucleotide-bin 99.8 2.1E-18 4.6E-23 143.5 19.9 234 135-373 54-325 (406)
181 PRK01742 tolB translocation pr 99.8 2.6E-18 5.6E-23 159.7 23.0 232 109-356 183-426 (429)
182 KOG0771 Prolactin regulatory e 99.8 4.6E-19 1E-23 152.4 16.1 195 92-287 148-354 (398)
183 KOG0649 WD40 repeat protein [G 99.8 2.2E-17 4.8E-22 132.4 24.2 198 81-287 55-274 (325)
184 PRK11028 6-phosphogluconolacto 99.8 1.2E-16 2.7E-21 143.9 30.6 242 88-333 34-304 (330)
185 KOG0649 WD40 repeat protein [G 99.8 7.6E-17 1.6E-21 129.3 25.4 267 91-372 13-313 (325)
186 KOG1587 Cytoplasmic dynein int 99.8 5.6E-17 1.2E-21 150.5 26.0 260 109-373 221-514 (555)
187 KOG0771 Prolactin regulatory e 99.8 2.2E-18 4.8E-23 148.2 15.2 194 176-371 148-350 (398)
188 KOG1963 WD40 repeat protein [G 99.8 2.5E-16 5.4E-21 147.0 27.8 285 86-373 203-536 (792)
189 KOG1188 WD40 repeat protein [G 99.8 1.1E-17 2.4E-22 140.2 16.9 249 80-332 62-345 (376)
190 KOG1445 Tumor-specific antigen 99.8 3.8E-18 8.2E-23 153.5 15.0 230 106-337 599-848 (1012)
191 KOG2110 Uncharacterized conser 99.8 3.1E-16 6.6E-21 133.0 24.9 230 132-372 7-245 (391)
192 KOG1517 Guanine nucleotide bin 99.8 7.7E-17 1.7E-21 152.7 23.2 245 88-335 1109-1383(1387)
193 KOG1963 WD40 repeat protein [G 99.8 3.4E-16 7.4E-21 146.1 26.5 269 92-364 20-417 (792)
194 KOG0290 Conserved WD40 repeat- 99.8 7.9E-17 1.7E-21 132.4 19.5 250 82-373 39-316 (364)
195 KOG1538 Uncharacterized conser 99.8 3.3E-17 7.1E-22 148.3 18.7 246 76-334 41-294 (1081)
196 PF02239 Cytochrom_D1: Cytochr 99.8 2.2E-15 4.8E-20 136.0 30.2 286 81-373 29-345 (369)
197 KOG2110 Uncharacterized conser 99.8 9.1E-15 2E-19 124.1 30.5 234 90-334 7-249 (391)
198 KOG0644 Uncharacterized conser 99.8 6.1E-19 1.3E-23 162.9 5.7 236 123-373 183-424 (1113)
199 KOG1007 WD repeat protein TSSC 99.7 1.3E-16 2.7E-21 131.1 17.4 206 78-286 112-360 (370)
200 KOG0290 Conserved WD40 repeat- 99.7 2.6E-16 5.6E-21 129.4 19.2 200 86-289 94-320 (364)
201 PRK01742 tolB translocation pr 99.7 3.3E-16 7.2E-21 145.6 21.1 209 151-372 183-398 (429)
202 KOG1587 Cytoplasmic dynein int 99.7 8.7E-16 1.9E-20 142.7 22.3 242 88-334 242-517 (555)
203 KOG1272 WD40-repeat-containing 99.7 1.4E-17 3E-22 144.8 9.7 263 88-363 129-397 (545)
204 KOG2111 Uncharacterized conser 99.7 5.4E-15 1.2E-19 123.2 23.7 231 133-372 8-253 (346)
205 PRK03629 tolB translocation pr 99.7 6.4E-15 1.4E-19 136.8 26.3 235 110-356 179-428 (429)
206 KOG4497 Uncharacterized conser 99.7 5E-15 1.1E-19 123.9 22.0 275 94-373 14-389 (447)
207 KOG4227 WD40 repeat protein [G 99.7 1.4E-15 3E-20 129.9 18.8 247 123-373 49-320 (609)
208 KOG1240 Protein kinase contain 99.7 5.4E-15 1.2E-19 142.4 24.7 254 115-373 1034-1332(1431)
209 KOG1524 WD40 repeat-containing 99.7 1.7E-15 3.6E-20 134.2 19.3 262 86-371 12-282 (737)
210 KOG1523 Actin-related protein 99.7 8.1E-15 1.8E-19 122.2 20.7 200 88-289 10-238 (361)
211 PRK04922 tolB translocation pr 99.7 1.8E-14 3.9E-19 134.3 24.8 234 110-355 184-432 (433)
212 KOG1524 WD40 repeat-containing 99.7 9.6E-16 2.1E-20 135.7 15.0 185 82-283 98-282 (737)
213 KOG1523 Actin-related protein 99.7 1.3E-14 2.8E-19 121.1 20.0 236 129-366 9-269 (361)
214 KOG1272 WD40-repeat-containing 99.7 2.5E-16 5.4E-21 137.1 10.0 229 133-373 132-360 (545)
215 KOG2394 WD40 protein DMR-N9 [G 99.7 2.9E-15 6.4E-20 132.7 16.5 198 139-354 182-383 (636)
216 KOG0322 G-protein beta subunit 99.7 3.1E-15 6.7E-20 121.5 14.9 200 84-286 51-322 (323)
217 KOG3881 Uncharacterized conser 99.6 3.1E-14 6.8E-19 121.7 20.1 260 88-356 55-342 (412)
218 KOG2139 WD40 repeat protein [G 99.6 4.9E-14 1.1E-18 119.5 20.7 182 90-276 100-299 (445)
219 KOG1310 WD40 repeat protein [G 99.6 3.2E-15 7E-20 132.8 14.1 215 123-337 43-307 (758)
220 PF02239 Cytochrom_D1: Cytochr 99.6 8.9E-13 1.9E-17 119.2 30.4 267 104-373 10-300 (369)
221 PRK02889 tolB translocation pr 99.6 1.1E-13 2.4E-18 128.7 25.0 235 110-356 176-425 (427)
222 KOG1409 Uncharacterized conser 99.6 4.8E-14 1E-18 118.8 19.7 246 80-333 16-270 (404)
223 PRK05137 tolB translocation pr 99.6 3.1E-13 6.8E-18 126.2 27.6 234 110-356 182-433 (435)
224 KOG2111 Uncharacterized conser 99.6 2.1E-12 4.5E-17 108.0 28.5 267 92-369 9-316 (346)
225 KOG2321 WD40 repeat protein [G 99.6 1.1E-13 2.4E-18 123.8 21.1 241 87-334 50-344 (703)
226 KOG1334 WD40 repeat protein [G 99.6 1.6E-14 3.5E-19 126.6 13.8 251 123-373 135-422 (559)
227 PF08662 eIF2A: Eukaryotic tra 99.6 1.5E-13 3.3E-18 113.1 18.6 146 219-373 10-177 (194)
228 PRK02889 tolB translocation pr 99.6 4.5E-13 9.8E-18 124.6 22.9 205 152-367 176-392 (427)
229 KOG4497 Uncharacterized conser 99.6 3.1E-12 6.7E-17 107.4 25.0 272 89-368 49-425 (447)
230 KOG2315 Predicted translation 99.6 3.1E-12 6.7E-17 114.5 25.0 269 89-373 35-388 (566)
231 PRK03629 tolB translocation pr 99.6 3.6E-12 7.8E-17 118.5 26.8 205 153-368 180-396 (429)
232 TIGR02800 propeller_TolB tol-p 99.6 3.4E-12 7.5E-17 118.9 26.3 234 110-354 170-417 (417)
233 PRK05137 tolB translocation pr 99.6 3.8E-12 8.2E-17 118.9 26.5 204 152-366 182-397 (435)
234 PF08662 eIF2A: Eukaryotic tra 99.6 8.9E-13 1.9E-17 108.5 19.6 148 135-287 10-179 (194)
235 PF10282 Lactonase: Lactonase, 99.6 1.3E-10 2.8E-15 105.1 35.4 268 103-372 2-319 (345)
236 KOG3881 Uncharacterized conser 99.6 9.8E-13 2.1E-17 112.7 19.9 236 131-373 56-318 (412)
237 KOG2139 WD40 repeat protein [G 99.5 1.8E-11 3.8E-16 104.2 26.8 267 50-332 111-430 (445)
238 KOG0974 WD-repeat protein WDR6 99.5 7.7E-13 1.7E-17 126.1 19.3 267 89-373 8-286 (967)
239 PRK04792 tolB translocation pr 99.5 1.3E-11 2.8E-16 115.3 26.4 235 111-356 199-447 (448)
240 PRK04922 tolB translocation pr 99.5 5.9E-12 1.3E-16 117.5 23.9 201 80-287 195-411 (433)
241 TIGR02658 TTQ_MADH_Hv methylam 99.5 3.8E-10 8.2E-15 100.0 33.3 255 110-372 27-327 (352)
242 PRK00178 tolB translocation pr 99.5 2.3E-11 5.1E-16 113.7 27.2 235 111-356 180-428 (430)
243 KOG4547 WD40 repeat-containing 99.5 3.8E-12 8.3E-17 114.6 20.0 184 183-372 3-217 (541)
244 KOG4547 WD40 repeat-containing 99.5 1.4E-11 3E-16 111.1 23.3 187 98-288 3-221 (541)
245 KOG2394 WD40 protein DMR-N9 [G 99.5 1.7E-13 3.6E-18 121.8 10.4 94 88-181 290-383 (636)
246 KOG2321 WD40 repeat protein [G 99.5 9.4E-12 2E-16 111.7 20.9 239 128-373 49-300 (703)
247 PF10282 Lactonase: Lactonase, 99.5 7.6E-10 1.6E-14 100.1 33.8 259 90-353 38-345 (345)
248 KOG0974 WD-repeat protein WDR6 99.5 2.2E-12 4.8E-17 123.0 17.1 194 91-288 90-289 (967)
249 KOG4190 Uncharacterized conser 99.5 5.3E-13 1.1E-17 119.2 11.4 277 82-371 729-1032(1034)
250 KOG1354 Serine/threonine prote 99.5 1.2E-11 2.6E-16 104.5 18.5 270 89-373 26-357 (433)
251 TIGR03300 assembly_YfgL outer 99.4 1.4E-10 3.1E-15 106.5 26.9 258 99-373 104-377 (377)
252 TIGR02800 propeller_TolB tol-p 99.4 6.7E-11 1.4E-15 110.3 25.1 204 153-367 171-386 (417)
253 COG5354 Uncharacterized protei 99.4 3.8E-10 8.1E-15 100.3 25.4 272 89-373 72-393 (561)
254 TIGR02658 TTQ_MADH_Hv methylam 99.4 3.1E-09 6.7E-14 94.3 30.0 235 96-341 53-338 (352)
255 PLN02919 haloacid dehalogenase 99.4 1.9E-09 4E-14 110.0 32.6 242 92-337 571-892 (1057)
256 KOG1064 RAVE (regulator of V-A 99.4 7.1E-12 1.5E-16 125.4 13.6 193 87-296 2207-2407(2439)
257 TIGR03300 assembly_YfgL outer 99.3 1.5E-09 3.2E-14 99.8 27.1 258 99-373 64-336 (377)
258 KOG4190 Uncharacterized conser 99.3 5.1E-12 1.1E-16 113.0 10.2 213 124-344 729-959 (1034)
259 KOG0309 Conserved WD40 repeat- 99.3 1.9E-11 4.1E-16 112.8 13.0 280 87-372 23-336 (1081)
260 PRK00178 tolB translocation pr 99.3 1.4E-09 3E-14 101.8 25.7 200 81-286 191-405 (430)
261 KOG1064 RAVE (regulator of V-A 99.3 2.4E-11 5.1E-16 121.8 13.6 219 128-368 2206-2439(2439)
262 PLN02919 haloacid dehalogenase 99.3 3.9E-09 8.5E-14 107.7 30.0 236 134-373 571-886 (1057)
263 PRK04792 tolB translocation pr 99.3 1.8E-09 3.9E-14 101.0 24.5 197 83-286 212-424 (448)
264 KOG0280 Uncharacterized conser 99.3 6.4E-10 1.4E-14 92.3 18.8 178 90-269 71-265 (339)
265 KOG2314 Translation initiation 99.3 2E-09 4.4E-14 96.6 22.4 272 90-367 251-559 (698)
266 PRK01029 tolB translocation pr 99.3 2.9E-09 6.4E-14 98.8 23.9 206 153-364 166-389 (428)
267 COG2706 3-carboxymuconate cycl 99.2 1.6E-07 3.5E-12 80.7 31.0 264 86-354 37-345 (346)
268 PF13360 PQQ_2: PQQ-like domai 99.2 2.2E-08 4.7E-13 85.8 26.2 217 109-338 2-235 (238)
269 KOG0280 Uncharacterized conser 99.2 5.1E-10 1.1E-14 92.9 14.3 154 91-245 124-285 (339)
270 KOG1409 Uncharacterized conser 99.2 1.1E-09 2.4E-14 92.8 16.0 156 89-245 69-271 (404)
271 PRK01029 tolB translocation pr 99.2 1.3E-08 2.7E-13 94.6 24.6 204 83-290 179-406 (428)
272 COG5354 Uncharacterized protei 99.2 2E-08 4.3E-13 89.6 22.6 272 86-373 30-346 (561)
273 KOG2041 WD40 repeat protein [G 99.1 1.2E-08 2.6E-13 94.4 21.1 276 88-371 14-333 (1189)
274 PF08450 SGL: SMP-30/Gluconola 99.1 1E-06 2.2E-11 75.9 32.0 218 135-362 4-242 (246)
275 PF15492 Nbas_N: Neuroblastoma 99.1 1E-07 2.2E-12 79.6 23.8 232 94-343 3-269 (282)
276 KOG1354 Serine/threonine prote 99.1 5.9E-09 1.3E-13 88.5 16.8 268 89-372 85-431 (433)
277 KOG4532 WD40-like repeat conta 99.1 4.1E-08 8.8E-13 80.8 20.8 222 141-362 83-319 (344)
278 KOG1912 WD40 repeat protein [G 99.1 1E-08 2.2E-13 95.7 19.3 125 77-201 44-184 (1062)
279 KOG2314 Translation initiation 99.1 4.4E-08 9.5E-13 88.3 22.4 269 92-373 214-523 (698)
280 KOG2315 Predicted translation 99.1 2.9E-08 6.3E-13 89.5 21.4 249 92-356 129-411 (566)
281 KOG1645 RING-finger-containing 99.1 1.8E-07 3.8E-12 81.4 25.1 255 112-372 175-458 (463)
282 COG2706 3-carboxymuconate cycl 99.1 1.4E-06 3.1E-11 75.0 29.7 263 109-372 15-318 (346)
283 PF08450 SGL: SMP-30/Gluconola 99.1 1.9E-06 4.1E-11 74.2 31.3 214 93-318 4-240 (246)
284 PRK11138 outer membrane biogen 99.1 2.1E-07 4.5E-12 86.1 26.3 258 100-372 120-391 (394)
285 KOG2695 WD40 repeat protein [G 99.0 9.1E-10 2E-14 93.4 8.5 149 104-255 228-387 (425)
286 PF13360 PQQ_2: PQQ-like domai 99.0 5E-07 1.1E-11 77.3 25.3 215 151-373 2-228 (238)
287 KOG0882 Cyclophilin-related pe 99.0 9.7E-09 2.1E-13 90.2 14.3 252 87-341 8-313 (558)
288 PF00400 WD40: WD domain, G-be 99.0 9.2E-10 2E-14 65.2 5.4 39 335-373 1-39 (39)
289 KOG0309 Conserved WD40 repeat- 99.0 1.5E-09 3.3E-14 100.5 9.2 205 82-287 108-339 (1081)
290 KOG4714 Nucleoporin [Nuclear s 99.0 7.7E-09 1.7E-13 84.6 12.0 159 86-245 87-255 (319)
291 KOG2041 WD40 repeat protein [G 99.0 1.6E-08 3.5E-13 93.6 14.9 231 131-367 15-280 (1189)
292 PRK04043 tolB translocation pr 99.0 1.1E-06 2.3E-11 81.4 26.9 191 132-334 189-401 (419)
293 KOG2695 WD40 repeat protein [G 98.9 3.2E-09 6.8E-14 90.2 8.0 163 188-355 227-402 (425)
294 KOG0882 Cyclophilin-related pe 98.9 3.6E-08 7.8E-13 86.7 14.7 273 49-330 20-369 (558)
295 COG5170 CDC55 Serine/threonine 98.9 5.7E-08 1.2E-12 81.6 15.2 274 88-372 26-364 (460)
296 PRK04043 tolB translocation pr 98.9 1.8E-06 4E-11 79.8 26.8 201 153-366 170-388 (419)
297 PF00400 WD40: WD domain, G-be 98.9 3.6E-09 7.8E-14 62.6 5.9 38 79-116 2-39 (39)
298 KOG3914 WD repeat protein WDR4 98.9 2.6E-08 5.7E-13 86.3 13.4 157 137-295 69-231 (390)
299 KOG4532 WD40-like repeat conta 98.9 6.4E-07 1.4E-11 73.9 20.6 231 100-334 84-332 (344)
300 PF04762 IKI3: IKI3 family; I 98.9 1.3E-06 2.9E-11 87.9 27.4 271 87-371 74-375 (928)
301 KOG1275 PAB-dependent poly(A) 98.9 4E-08 8.7E-13 93.4 15.5 183 99-287 146-342 (1118)
302 KOG3914 WD repeat protein WDR4 98.9 1.7E-08 3.6E-13 87.5 11.7 160 91-254 65-233 (390)
303 KOG1832 HIV-1 Vpr-binding prot 98.9 9.1E-10 2E-14 103.9 4.0 220 123-362 1094-1318(1516)
304 KOG4714 Nucleoporin [Nuclear s 98.9 1E-08 2.3E-13 83.9 9.0 184 185-373 47-252 (319)
305 COG4946 Uncharacterized protei 98.9 2.3E-06 4.9E-11 76.2 24.1 145 85-231 356-505 (668)
306 KOG1275 PAB-dependent poly(A) 98.9 9E-08 1.9E-12 91.1 15.7 180 184-373 146-340 (1118)
307 KOG1832 HIV-1 Vpr-binding prot 98.9 2E-09 4.3E-14 101.7 4.7 199 81-296 1094-1300(1516)
308 COG4946 Uncharacterized protei 98.8 2.1E-06 4.5E-11 76.4 22.3 211 97-318 275-503 (668)
309 PRK11138 outer membrane biogen 98.8 2E-06 4.4E-11 79.5 23.7 259 99-372 68-350 (394)
310 PRK02888 nitrous-oxide reducta 98.8 4.8E-06 1E-10 78.3 25.6 164 193-363 213-449 (635)
311 PF04762 IKI3: IKI3 family; I 98.8 3.4E-05 7.3E-10 78.1 32.8 281 87-370 208-559 (928)
312 PF14583 Pectate_lyase22: Olig 98.7 9.9E-05 2.2E-09 65.8 29.3 271 95-372 42-378 (386)
313 PF07433 DUF1513: Protein of u 98.7 8.9E-06 1.9E-10 70.1 22.1 187 81-280 49-279 (305)
314 PF15492 Nbas_N: Neuroblastoma 98.7 4.4E-05 9.5E-10 64.1 24.2 222 136-373 3-257 (282)
315 PF07433 DUF1513: Protein of u 98.7 0.00011 2.3E-09 63.6 27.2 229 133-367 7-278 (305)
316 PRK02888 nitrous-oxide reducta 98.6 6.1E-06 1.3E-10 77.6 19.0 178 94-288 198-405 (635)
317 KOG1912 WD40 repeat protein [G 98.6 1.5E-05 3.3E-10 75.1 20.3 238 91-334 18-305 (1062)
318 KOG2066 Vacuolar assembly/sort 98.6 8.3E-06 1.8E-10 77.2 18.4 185 132-334 41-234 (846)
319 KOG1920 IkappaB kinase complex 98.5 5E-05 1.1E-09 75.2 23.8 235 88-335 68-324 (1265)
320 COG3391 Uncharacterized conser 98.5 0.00062 1.3E-08 62.5 29.8 250 112-365 13-272 (381)
321 KOG1645 RING-finger-containing 98.5 6E-05 1.3E-09 66.0 20.9 243 83-333 188-461 (463)
322 cd00216 PQQ_DH Dehydrogenases 98.4 0.0003 6.5E-09 66.9 26.2 258 100-372 61-421 (488)
323 COG5170 CDC55 Serine/threonine 98.4 3.5E-06 7.5E-11 71.1 10.6 232 131-373 27-307 (460)
324 PF00780 CNH: CNH domain; Int 98.4 0.00081 1.7E-08 58.9 26.0 230 98-345 5-267 (275)
325 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00049 1.1E-08 62.6 24.7 247 109-363 22-345 (353)
326 cd00216 PQQ_DH Dehydrogenases 98.4 0.00084 1.8E-08 63.9 27.1 233 101-342 111-433 (488)
327 KOG2066 Vacuolar assembly/sort 98.3 1.7E-05 3.6E-10 75.2 14.7 165 174-358 41-218 (846)
328 KOG2114 Vacuolar assembly/sort 98.3 0.00014 3.1E-09 69.6 20.8 205 137-348 30-259 (933)
329 KOG3617 WD40 and TPR repeat-co 98.3 1.6E-05 3.4E-10 75.8 13.5 106 179-287 22-131 (1416)
330 PF11768 DUF3312: Protein of u 98.3 2.8E-05 6.2E-10 71.5 14.8 67 305-373 261-327 (545)
331 PF11768 DUF3312: Protein of u 98.3 8.4E-05 1.8E-09 68.5 17.7 115 133-249 208-334 (545)
332 COG3391 Uncharacterized conser 98.3 0.00074 1.6E-08 62.0 24.2 202 92-296 77-292 (381)
333 KOG1008 Uncharacterized conser 98.3 2.9E-07 6.4E-12 84.6 1.2 194 173-373 57-273 (783)
334 KOG2114 Vacuolar assembly/sort 98.2 0.00053 1.1E-08 65.9 21.4 198 95-296 30-252 (933)
335 KOG1920 IkappaB kinase complex 98.2 0.00062 1.3E-08 67.9 22.3 195 173-373 69-320 (1265)
336 PF04053 Coatomer_WDAD: Coatom 98.1 0.0036 7.9E-08 58.2 24.5 221 130-372 32-259 (443)
337 KOG1008 Uncharacterized conser 98.1 8.2E-07 1.8E-11 81.8 0.4 197 90-288 58-276 (783)
338 PF08553 VID27: VID27 cytoplas 98.1 0.00013 2.9E-09 71.3 14.8 138 227-366 494-639 (794)
339 smart00320 WD40 WD40 repeats. 98.0 1.9E-05 4.1E-10 45.4 5.8 39 335-373 2-40 (40)
340 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0054 1.2E-07 51.2 23.2 70 100-169 63-132 (354)
341 PF08596 Lgl_C: Lethal giant l 98.0 0.011 2.3E-07 54.3 25.4 262 90-366 3-327 (395)
342 PF06977 SdiA-regulated: SdiA- 98.0 0.005 1.1E-07 52.5 21.5 201 167-370 16-245 (248)
343 PF08553 VID27: VID27 cytoplas 98.0 0.00024 5.2E-09 69.5 14.6 143 141-286 492-646 (794)
344 KOG3617 WD40 and TPR repeat-co 97.9 0.00093 2E-08 64.2 17.5 107 94-203 21-131 (1416)
345 KOG4499 Ca2+-binding protein R 97.9 0.0032 6.8E-08 51.7 18.1 202 151-356 36-264 (310)
346 smart00320 WD40 WD40 repeats. 97.9 3.6E-05 7.8E-10 44.1 5.0 37 80-116 4-40 (40)
347 PF04053 Coatomer_WDAD: Coatom 97.9 0.0054 1.2E-07 57.1 21.4 221 87-333 31-262 (443)
348 COG0823 TolB Periplasmic compo 97.9 0.0018 4E-08 59.8 18.3 190 166-363 186-387 (425)
349 PF06433 Me-amine-dh_H: Methyl 97.9 0.016 3.5E-07 51.1 29.2 258 110-373 17-318 (342)
350 PF06977 SdiA-regulated: SdiA- 97.8 0.017 3.7E-07 49.2 22.6 196 83-282 16-245 (248)
351 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.048 1E-06 52.3 28.7 189 100-292 69-338 (527)
352 PF03178 CPSF_A: CPSF A subuni 97.7 0.031 6.8E-07 50.1 27.4 172 111-287 3-202 (321)
353 KOG3621 WD40 repeat-containing 97.7 0.00027 5.9E-09 66.4 10.1 110 216-371 35-150 (726)
354 KOG3621 WD40 repeat-containing 97.7 0.0015 3.2E-08 61.6 14.4 113 132-245 35-155 (726)
355 PF06433 Me-amine-dh_H: Methyl 97.7 0.034 7.4E-07 49.0 28.8 242 93-343 40-330 (342)
356 PF03178 CPSF_A: CPSF A subuni 97.7 0.039 8.4E-07 49.5 25.6 211 153-370 3-260 (321)
357 PF08596 Lgl_C: Lethal giant l 97.6 0.021 4.5E-07 52.5 21.2 195 82-278 80-327 (395)
358 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.028 6E-07 47.1 23.4 121 143-267 24-145 (354)
359 KOG2395 Protein involved in va 97.6 0.0013 2.8E-08 60.1 12.4 132 229-364 349-490 (644)
360 PF00930 DPPIV_N: Dipeptidyl p 97.6 0.061 1.3E-06 49.0 23.2 220 139-362 1-297 (353)
361 COG0823 TolB Periplasmic compo 97.6 0.023 5E-07 52.7 20.3 155 129-289 191-360 (425)
362 PF04841 Vps16_N: Vps16, N-ter 97.5 0.077 1.7E-06 49.3 23.7 114 214-348 216-329 (410)
363 KOG2444 WD40 repeat protein [G 97.5 0.00012 2.5E-09 59.7 4.4 142 144-289 32-179 (238)
364 PF04841 Vps16_N: Vps16, N-ter 97.5 0.086 1.9E-06 49.0 25.4 191 153-359 62-273 (410)
365 PF05096 Glu_cyclase_2: Glutam 97.5 0.053 1.1E-06 46.2 22.8 180 92-277 48-250 (264)
366 PHA02713 hypothetical protein; 97.4 0.022 4.9E-07 55.1 19.2 217 110-338 272-538 (557)
367 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.026 5.6E-07 41.1 15.7 100 175-281 2-108 (111)
368 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.013 2.9E-07 42.5 12.9 101 91-198 2-109 (111)
369 KOG4441 Proteins containing BT 97.4 0.03 6.5E-07 54.2 19.3 229 97-335 282-548 (571)
370 COG3386 Gluconolactonase [Carb 97.3 0.11 2.4E-06 46.0 23.2 217 138-364 32-275 (307)
371 KOG1897 Damage-specific DNA bi 97.3 0.23 4.9E-06 49.5 26.8 273 91-371 586-894 (1096)
372 KOG4640 Anaphase-promoting com 97.3 0.0015 3.2E-08 60.9 9.0 92 174-267 22-115 (665)
373 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.3 0.19 4.1E-06 48.3 25.3 148 100-249 120-338 (527)
374 KOG2444 WD40 repeat protein [G 97.3 0.00081 1.8E-08 54.9 6.5 138 229-373 33-175 (238)
375 KOG2395 Protein involved in va 97.2 0.0051 1.1E-07 56.4 11.7 145 139-287 342-500 (644)
376 KOG4499 Ca2+-binding protein R 97.1 0.048 1E-06 45.0 15.2 136 131-268 109-264 (310)
377 TIGR03074 PQQ_membr_DH membran 97.1 0.4 8.7E-06 48.0 24.4 200 142-341 194-485 (764)
378 PF02897 Peptidase_S9_N: Proly 97.0 0.33 7.2E-06 45.2 28.7 191 92-287 127-357 (414)
379 KOG2079 Vacuolar assembly/sort 96.8 0.0065 1.4E-07 60.3 9.0 102 99-202 98-202 (1206)
380 KOG2079 Vacuolar assembly/sort 96.8 0.0059 1.3E-07 60.5 8.3 98 268-368 98-198 (1206)
381 KOG4441 Proteins containing BT 96.7 0.15 3.2E-06 49.5 17.7 217 142-368 285-534 (571)
382 PRK13616 lipoprotein LpqB; Pro 96.7 0.43 9.4E-06 46.4 20.4 148 131-286 350-524 (591)
383 KOG4640 Anaphase-promoting com 96.7 0.013 2.7E-07 55.0 9.2 90 132-223 22-114 (665)
384 PF02897 Peptidase_S9_N: Proly 96.7 0.57 1.2E-05 43.6 25.8 219 133-359 126-384 (414)
385 PHA02713 hypothetical protein; 96.6 0.094 2E-06 50.8 15.3 183 99-289 303-535 (557)
386 PRK13616 lipoprotein LpqB; Pro 96.6 0.72 1.6E-05 44.9 21.0 187 173-370 350-563 (591)
387 PF10647 Gmad1: Lipoprotein Lp 96.4 0.49 1.1E-05 40.8 17.3 148 216-367 25-187 (253)
388 PF12894 Apc4_WD40: Anaphase-p 96.4 0.0089 1.9E-07 36.3 4.4 29 345-373 11-39 (47)
389 TIGR02604 Piru_Ver_Nterm putat 96.4 0.21 4.6E-06 45.7 15.4 145 216-364 15-202 (367)
390 COG3490 Uncharacterized protei 96.3 0.58 1.3E-05 40.1 16.3 57 94-150 119-181 (366)
391 PF14727 PHTB1_N: PTHB1 N-term 96.3 0.93 2E-05 41.9 29.2 144 99-243 36-203 (418)
392 PF05096 Glu_cyclase_2: Glutam 96.1 0.79 1.7E-05 39.2 25.6 182 176-364 48-249 (264)
393 PHA03098 kelch-like protein; P 96.0 0.55 1.2E-05 45.5 17.2 184 98-288 293-512 (534)
394 PF12894 Apc4_WD40: Anaphase-p 96.0 0.028 6.1E-07 34.1 5.3 33 214-247 11-43 (47)
395 PF00780 CNH: CNH domain; Int 95.9 1 2.2E-05 39.2 24.7 142 140-291 5-169 (275)
396 COG3386 Gluconolactonase [Carb 95.9 1.2 2.5E-05 39.6 19.6 181 91-275 68-273 (307)
397 PHA02790 Kelch-like protein; P 95.8 0.94 2E-05 43.2 17.5 172 99-278 271-456 (480)
398 PF07995 GSDH: Glucose / Sorbo 95.6 1.6 3.5E-05 39.3 24.1 57 314-370 270-330 (331)
399 KOG3630 Nuclear pore complex, 95.6 0.15 3.2E-06 51.5 11.2 142 132-274 102-260 (1405)
400 COG3204 Uncharacterized protei 95.5 1.4 3.1E-05 38.0 15.6 155 215-369 86-257 (316)
401 PHA03098 kelch-like protein; P 95.5 0.94 2E-05 43.8 16.7 186 140-336 293-514 (534)
402 KOG1897 Damage-specific DNA bi 95.5 3.3 7.2E-05 41.7 30.7 240 89-334 354-614 (1096)
403 COG3823 Glutamine cyclotransfe 95.4 1.2 2.7E-05 36.4 13.9 172 99-275 55-247 (262)
404 COG3823 Glutamine cyclotransfe 95.4 1.2 2.7E-05 36.3 13.9 106 141-248 55-162 (262)
405 COG3490 Uncharacterized protei 95.3 1.7 3.6E-05 37.5 15.4 154 206-363 59-243 (366)
406 COG5167 VID27 Protein involved 95.2 0.65 1.4E-05 43.1 12.9 135 225-364 478-622 (776)
407 PF10168 Nup88: Nuclear pore c 95.0 4.3 9.2E-05 40.6 21.5 93 132-247 86-182 (717)
408 PF05694 SBP56: 56kDa selenium 94.9 3 6.5E-05 38.4 23.8 194 141-335 86-344 (461)
409 PHA02790 Kelch-like protein; P 94.8 2.4 5.3E-05 40.4 16.8 142 141-289 271-425 (480)
410 PF12234 Rav1p_C: RAVE protein 94.6 1.8 3.8E-05 42.2 15.0 112 218-332 33-155 (631)
411 PF14655 RAB3GAP2_N: Rab3 GTPa 94.5 0.81 1.8E-05 42.2 12.0 97 73-169 292-407 (415)
412 TIGR02604 Piru_Ver_Nterm putat 94.4 2.3 5.1E-05 38.9 15.3 141 90-233 15-202 (367)
413 PF14583 Pectate_lyase22: Olig 94.4 3.9 8.4E-05 37.2 24.6 224 136-366 41-303 (386)
414 COG5276 Uncharacterized conser 94.3 3.2 6.9E-05 36.0 25.4 260 100-373 96-367 (370)
415 PF12234 Rav1p_C: RAVE protein 94.1 2.7 5.9E-05 40.9 15.2 98 186-285 42-154 (631)
416 PF07569 Hira: TUP1-like enhan 94.1 0.41 8.8E-06 40.2 8.7 63 310-373 17-93 (219)
417 COG4257 Vgb Streptogramin lyas 93.7 4.1 9E-05 35.0 16.3 187 90-288 63-263 (353)
418 PRK10115 protease 2; Provision 93.7 8.5 0.00018 38.6 32.0 192 90-286 128-343 (686)
419 KOG2280 Vacuolar assembly/sort 93.4 3.1 6.8E-05 40.6 13.9 183 151-342 63-255 (829)
420 TIGR03074 PQQ_membr_DH membran 93.3 10 0.00022 38.4 23.7 194 100-294 194-484 (764)
421 COG3204 Uncharacterized protei 93.1 5.4 0.00012 34.6 19.3 188 169-358 82-296 (316)
422 PF07569 Hira: TUP1-like enhan 93.1 0.9 1.9E-05 38.2 9.1 63 96-159 18-94 (219)
423 PF14870 PSII_BNR: Photosynthe 92.9 6.3 0.00014 34.9 27.6 149 216-372 146-301 (302)
424 PF10313 DUF2415: Uncharacteri 92.8 0.48 1E-05 27.9 4.9 31 89-119 1-34 (43)
425 KOG3630 Nuclear pore complex, 92.7 0.83 1.8E-05 46.5 9.4 119 252-371 95-224 (1405)
426 KOG1916 Nuclear protein, conta 92.4 0.15 3.2E-06 50.2 3.9 147 94-244 189-374 (1283)
427 PF14655 RAB3GAP2_N: Rab3 GTPa 92.3 2.6 5.7E-05 38.9 11.7 83 131-213 308-408 (415)
428 PF05694 SBP56: 56kDa selenium 92.2 9.5 0.00021 35.3 25.4 189 99-288 86-343 (461)
429 PF07676 PD40: WD40-like Beta 92.2 0.56 1.2E-05 26.9 4.9 32 341-372 4-38 (39)
430 TIGR03118 PEPCTERM_chp_1 conse 92.2 7.5 0.00016 34.0 23.9 221 133-355 25-307 (336)
431 PF10168 Nup88: Nuclear pore c 92.0 15 0.00032 36.9 19.4 97 87-205 83-181 (717)
432 PF14761 HPS3_N: Hermansky-Pud 91.9 6.4 0.00014 32.6 15.8 145 186-332 29-213 (215)
433 TIGR03606 non_repeat_PQQ dehyd 91.8 12 0.00025 35.3 17.6 54 216-269 31-90 (454)
434 KOG2280 Vacuolar assembly/sort 91.5 15 0.00033 36.1 16.0 169 195-371 64-242 (829)
435 COG4257 Vgb Streptogramin lyas 91.2 9 0.00019 33.0 19.6 186 133-334 64-263 (353)
436 PF10313 DUF2415: Uncharacteri 91.1 0.96 2.1E-05 26.7 4.9 31 131-161 1-34 (43)
437 TIGR03118 PEPCTERM_chp_1 conse 91.1 10 0.00022 33.3 20.9 208 90-298 24-290 (336)
438 PF07250 Glyoxal_oxid_N: Glyox 90.8 8.6 0.00019 32.8 12.4 144 198-344 49-208 (243)
439 PF15390 DUF4613: Domain of un 90.6 15 0.00032 35.3 14.6 150 127-286 16-185 (671)
440 PF15390 DUF4613: Domain of un 90.5 16 0.00034 35.1 14.5 145 89-243 20-185 (671)
441 PF11715 Nup160: Nucleoporin N 89.8 2.1 4.6E-05 41.6 9.2 71 98-168 156-256 (547)
442 PRK10115 protease 2; Provision 89.5 25 0.00054 35.3 26.5 110 132-243 128-254 (686)
443 COG5167 VID27 Protein involved 89.3 11 0.00024 35.5 12.4 145 95-244 474-632 (776)
444 KOG1916 Nuclear protein, conta 89.2 0.13 2.8E-06 50.7 0.3 62 311-373 191-263 (1283)
445 PF02333 Phytase: Phytase; In 88.3 20 0.00044 32.8 24.4 195 98-296 66-300 (381)
446 PF13449 Phytase-like: Esteras 88.1 19 0.00042 32.3 16.8 31 88-118 19-55 (326)
447 KOG2377 Uncharacterized conser 88.0 14 0.00029 34.3 12.0 111 248-360 57-168 (657)
448 PF08728 CRT10: CRT10; InterP 88.0 29 0.00063 34.6 15.1 103 184-286 113-245 (717)
449 PF10647 Gmad1: Lipoprotein Lp 87.8 17 0.00037 31.3 22.1 156 174-329 25-192 (253)
450 PF07995 GSDH: Glucose / Sorbo 87.7 21 0.00045 32.2 26.5 49 91-141 4-59 (331)
451 TIGR02276 beta_rpt_yvtn 40-res 87.5 3.4 7.4E-05 23.8 5.8 31 313-343 1-32 (42)
452 PF14870 PSII_BNR: Photosynthe 87.3 20 0.00044 31.7 27.7 129 232-366 120-253 (302)
453 PF14781 BBS2_N: Ciliary BBSom 87.2 11 0.00024 28.6 12.9 112 137-251 5-132 (136)
454 TIGR03548 mutarot_permut cycli 87.0 22 0.00048 31.8 16.1 106 99-207 72-198 (323)
455 PF14761 HPS3_N: Hermansky-Pud 86.6 4.5 9.7E-05 33.5 7.6 57 217-276 20-78 (215)
456 TIGR03548 mutarot_permut cycli 86.3 24 0.00052 31.5 19.3 65 225-289 123-196 (323)
457 PF08728 CRT10: CRT10; InterP 85.6 9.5 0.00021 37.8 10.5 112 91-202 103-245 (717)
458 PF08801 Nucleoporin_N: Nup133 84.4 18 0.00039 33.8 11.8 30 259-288 191-220 (422)
459 PRK13684 Ycf48-like protein; P 84.3 31 0.00068 31.1 28.4 151 216-372 174-328 (334)
460 PF14727 PHTB1_N: PTHB1 N-term 84.1 36 0.00079 31.7 25.7 144 142-287 37-204 (418)
461 TIGR02276 beta_rpt_yvtn 40-res 83.6 5.8 0.00012 22.8 5.4 36 187-222 6-41 (42)
462 PF03088 Str_synth: Strictosid 83.5 13 0.00028 26.1 8.6 42 232-275 33-74 (89)
463 KOG4460 Nuclear pore complex, 83.4 15 0.00032 34.7 10.1 69 305-373 105-196 (741)
464 TIGR03547 muta_rot_YjhT mutatr 83.2 35 0.00076 30.8 17.0 24 98-121 62-96 (346)
465 PF12768 Rax2: Cortical protei 83.1 31 0.00068 30.2 12.8 92 110-202 16-122 (281)
466 KOG2247 WD40 repeat-containing 83.0 0.18 3.8E-06 46.4 -2.0 142 219-368 39-181 (615)
467 COG4590 ABC-type uncharacteriz 82.6 8.7 0.00019 35.5 8.3 159 85-246 217-388 (733)
468 PLN02153 epithiospecifier prot 82.3 38 0.00082 30.6 20.7 65 184-248 85-171 (341)
469 PF07250 Glyoxal_oxid_N: Glyox 81.7 28 0.00061 29.7 10.7 139 154-296 48-206 (243)
470 KOG4460 Nuclear pore complex, 81.5 18 0.00038 34.2 9.9 28 88-115 103-130 (741)
471 PF11715 Nup160: Nucleoporin N 81.0 10 0.00023 36.8 9.1 72 224-295 156-256 (547)
472 PF14269 Arylsulfotran_2: Aryl 81.0 39 0.00086 29.9 14.0 162 191-373 21-218 (299)
473 PF10395 Utp8: Utp8 family; I 80.7 62 0.0013 32.0 17.3 162 88-252 129-313 (670)
474 KOG1900 Nuclear pore complex, 80.4 43 0.00093 35.5 13.0 139 147-288 94-273 (1311)
475 PRK13684 Ycf48-like protein; P 80.4 44 0.00096 30.1 19.8 148 130-284 172-328 (334)
476 COG1520 FOG: WD40-like repeat 80.4 47 0.001 30.4 23.3 109 143-254 69-181 (370)
477 KOG2247 WD40 repeat-containing 79.8 0.27 5.8E-06 45.2 -2.0 144 133-281 37-182 (615)
478 PRK14131 N-acetylneuraminic ac 79.6 50 0.0011 30.3 17.6 12 237-248 190-201 (376)
479 KOG1983 Tomosyn and related SN 78.6 49 0.0011 34.8 13.2 31 131-161 36-66 (993)
480 PF13449 Phytase-like: Esteras 77.9 52 0.0011 29.5 16.3 102 260-362 87-231 (326)
481 smart00564 PQQ beta-propeller 77.8 6.1 0.00013 21.3 3.9 24 228-251 8-31 (33)
482 PF14781 BBS2_N: Ciliary BBSom 77.6 29 0.00063 26.4 12.5 87 93-181 3-101 (136)
483 TIGR03547 muta_rot_YjhT mutatr 77.5 55 0.0012 29.5 20.6 41 195-235 168-210 (346)
484 KOG4659 Uncharacterized conser 76.7 1.1E+02 0.0024 32.8 19.5 22 343-364 659-680 (1899)
485 PLN02193 nitrile-specifier pro 76.5 72 0.0016 30.4 18.7 151 184-337 228-414 (470)
486 KOG1983 Tomosyn and related SN 75.0 1.2E+02 0.0025 32.1 15.1 29 90-118 37-65 (993)
487 KOG1900 Nuclear pore complex, 75.0 1.2E+02 0.0027 32.3 14.7 135 107-245 96-273 (1311)
488 PF01011 PQQ: PQQ enzyme repea 74.0 10 0.00022 21.5 4.2 28 228-255 2-29 (38)
489 PRK14131 N-acetylneuraminic ac 73.4 75 0.0016 29.2 20.6 24 140-163 83-117 (376)
490 PRK05560 DNA gyrase subunit A; 72.4 1.2E+02 0.0026 31.2 32.2 251 97-356 495-792 (805)
491 PLN02153 epithiospecifier prot 71.7 77 0.0017 28.6 21.7 63 99-163 32-112 (341)
492 PF08801 Nucleoporin_N: Nup133 71.5 89 0.0019 29.2 15.0 27 347-373 191-217 (422)
493 PF03022 MRJP: Major royal jel 71.5 72 0.0016 28.1 21.3 165 111-275 35-253 (287)
494 PF03088 Str_synth: Strictosid 71.4 11 0.00025 26.4 4.7 43 320-363 32-74 (89)
495 PLN02193 nitrile-specifier pro 68.8 1.1E+02 0.0024 29.2 23.0 188 99-290 175-413 (470)
496 PF01436 NHL: NHL repeat; Int 67.3 16 0.00035 19.0 4.0 25 260-284 4-28 (28)
497 PF05935 Arylsulfotrans: Aryls 67.2 1.2E+02 0.0026 29.0 16.7 121 220-344 153-312 (477)
498 PF12341 DUF3639: Protein of u 67.1 17 0.00036 19.1 3.9 25 347-373 3-27 (27)
499 PF02333 Phytase: Phytase; In 67.1 1E+02 0.0023 28.3 22.3 189 140-334 66-291 (381)
500 PLN00033 photosystem II stabil 66.3 1.1E+02 0.0024 28.4 18.1 151 88-241 238-396 (398)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-56 Score=373.09 Aligned_cols=291 Identities=27% Similarity=0.505 Sum_probs=262.6
Q ss_pred cccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 017314 77 PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV 156 (373)
Q Consensus 77 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~i 156 (373)
-..|...+.||.++|-++.|+|+|..|+|||.|.++|+||+.+..+..+.++|...|.+++|+|||..|++|+.||+|++
T Consensus 104 vtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l 183 (480)
T KOG0271|consen 104 VTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL 183 (480)
T ss_pred cceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCee-EEEeecCCCcEEEEEEeeC----CCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc-eeEEEEccCCCEEE
Q 017314 157 WDVNSGRV-RHTLTGHTDKVCAVDVSKI----SSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIF 230 (373)
Q Consensus 157 wd~~~~~~-~~~~~~h~~~v~~~~~~~~----~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~ 230 (373)
||..+|++ ...|.+|+..|++++|.|. ..+.++|+|.||+++|||+..+.++..+..|.. ++|+.|--+| +++
T Consensus 184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liy 262 (480)
T KOG0271|consen 184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIY 262 (480)
T ss_pred ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEE
Confidence 99998865 5689999999999999873 356899999999999999999999999888864 8899886554 788
Q ss_pred EEeCCCcEEEEECCCCeeeEEEe---------------------------------------------------------
Q 017314 231 SGHIDGNLRLWDIQTGKLLSEVA--------------------------------------------------------- 253 (373)
Q Consensus 231 sg~~dg~i~iwd~~~~~~~~~~~--------------------------------------------------------- 253 (373)
+|+.|++|++|+...|.+.+++.
T Consensus 263 SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg 342 (480)
T KOG0271|consen 263 SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG 342 (480)
T ss_pred ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence 99999999999876654432222
Q ss_pred ----------------------cccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEE
Q 017314 254 ----------------------AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI 311 (373)
Q Consensus 254 ----------------------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (373)
+|. ..|+.+.|+||++++++++.|..|++||.++++.+.+|++|...+. .++.
T Consensus 343 sDd~tlflW~p~~~kkpi~rmtgHq-~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VY----qvaw 417 (480)
T KOG0271|consen 343 SDDFTLFLWNPFKSKKPITRMTGHQ-ALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVY----QVAW 417 (480)
T ss_pred cCCceEEEecccccccchhhhhchh-hheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeE----EEEe
Confidence 222 4588999999999999999999999999999999999998876665 3778
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 312 SPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 312 s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
+.|.++|+|||.|.++++|++.+.++...|.||..+|.++.|+|||+.+++|+.|..+++|.
T Consensus 418 saDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 418 SADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999995
No 2
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.5e-55 Score=372.99 Aligned_cols=320 Identities=44% Similarity=0.720 Sum_probs=294.0
Q ss_pred hcHHHHhcccccceeeccccCccccccccccccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCc--eee
Q 017314 47 SGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS--LSS 124 (373)
Q Consensus 47 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~ 124 (373)
.+++.....+.+|....... .++.+..+|+.+...+..|.+.|..+.|-++...|++||.|..|++|++..++ ...
T Consensus 136 l~~~~~r~~s~~ga~~~~~~--d~~v~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~ 213 (459)
T KOG0288|consen 136 LGLKDLRRQSVDGAVPRTED--DHFVEDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELIS 213 (459)
T ss_pred cchhhhhhhhhcCCCccccC--chhhhcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhh
Confidence 35556666677776665444 67788999999999999999999999999999999999999999999987766 678
Q ss_pred eccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccC
Q 017314 125 TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 204 (373)
Q Consensus 125 ~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~ 204 (373)
++.|..++|+++.|.+++..+++++.|+.+++|++...+..++|.||++.|+++.|.... ..+++|+.|.+|++||+.+
T Consensus 214 tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k 292 (459)
T KOG0288|consen 214 TLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQK 292 (459)
T ss_pred hhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhh
Confidence 899999999999999999999999999999999999999999999999999999987643 3399999999999999999
Q ss_pred CeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEE
Q 017314 205 GYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF 284 (373)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~ 284 (373)
++|.+++...+.++.++.+ +..+++|..|++||+||+++......+..+ +.|+++..++++..|++++.|++++++
T Consensus 293 ~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g--g~vtSl~ls~~g~~lLsssRDdtl~vi 368 (459)
T KOG0288|consen 293 AYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG--GRVTSLDLSMDGLELLSSSRDDTLKVI 368 (459)
T ss_pred hheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecC--cceeeEeeccCCeEEeeecCCCceeee
Confidence 9999999888889988887 567899999999999999999999888887 589999999999999999999999999
Q ss_pred EccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCcc--EEEEEEcCCCCcEEE
Q 017314 285 DIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAP--VLSCSWSGLGKPLAS 362 (373)
Q Consensus 285 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~--V~~~~~s~~g~~l~s 362 (373)
|+++.+..+.+...+....+.|++++|||++.|+++||.||.|+||++.++++...++....+ |++++|+|.|.+|++
T Consensus 369 DlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Lls 448 (459)
T KOG0288|consen 369 DLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLS 448 (459)
T ss_pred ecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhc
Confidence 999999999999999999999999999999999999999999999999999999998875554 999999999999999
Q ss_pred EeCCCeEEEcC
Q 017314 363 ADKNGVVCVWT 373 (373)
Q Consensus 363 ~s~dg~i~iW~ 373 (373)
++.++.+++|+
T Consensus 449 adk~~~v~lW~ 459 (459)
T KOG0288|consen 449 ADKQKAVTLWT 459 (459)
T ss_pred ccCCcceEecC
Confidence 99999999996
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-54 Score=367.67 Aligned_cols=282 Identities=24% Similarity=0.375 Sum_probs=266.2
Q ss_pred CccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCe
Q 017314 86 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHD--NRSVIAASSSNNLYVWDVNSGR 163 (373)
Q Consensus 86 ~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~s~d~~i~iwd~~~~~ 163 (373)
+-.++|..+.|+.|+..|+|||.+|.+++|+..+...+.++.||...|.++.|+|. +..+++|+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 56789999999999999999999999999999999999999999999999999998 5689999999999999999999
Q ss_pred eEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc-eeEEEEccCCCEEEEEeCCCcEEEEE
Q 017314 164 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWD 242 (373)
Q Consensus 164 ~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~sg~~dg~i~iwd 242 (373)
++..+.+|...|..++|+| ++++|+|+|.|.+.|+||++++..+....+|+. +.+++|+|||..++||+.|..-||||
T Consensus 253 ~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD 331 (459)
T ss_pred chhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence 9999999999999999998 789999999999999999999887766677765 89999999999999999999999999
Q ss_pred CCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECC-CCcEEEEE
Q 017314 243 IQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP-DESYVAAG 321 (373)
Q Consensus 243 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~sg 321 (373)
+++|+++..+.+|. .+|.+++|+|+|..|+|||.|++++|||++.......+.+|.+.+. .++|+| .|.+|+|+
T Consensus 332 lRtgr~im~L~gH~-k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS----~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 332 LRTGRCIMFLAGHI-KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVS----QVKYSPQEGYFLVTA 406 (459)
T ss_pred cccCcEEEEecccc-cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhh----heEecccCCeEEEEc
Confidence 99999999999986 8999999999999999999999999999999888888888877664 478998 78999999
Q ss_pred eCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 322 SADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 322 s~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
|.|++++||...++.++++|.||.+.|.+++++|||++|+|+|.|.+|++|.
T Consensus 407 syD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 407 SYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999999999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.4e-50 Score=324.72 Aligned_cols=289 Identities=21% Similarity=0.356 Sum_probs=267.4
Q ss_pred ceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 017314 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV 159 (373)
Q Consensus 80 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 159 (373)
..++|++|.+.|+++.|++|.++|+|+|.||.+.|||.-|....+.+.-....|..+||+|.|+++++|+.|+.+.||++
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 45789999999999999999999999999999999999988888888777889999999999999999999999999999
Q ss_pred CCC------eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC-ceeEEEEcc-CCCEEEE
Q 017314 160 NSG------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSM-DGQTIFS 231 (373)
Q Consensus 160 ~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~-~g~~l~s 231 (373)
.+. +..+.+.+|+..+.++.|.+ ..+|+|+|.|.++.+||+++++.+..+..|. .|.+++++| +++.+++
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvS 204 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVS 204 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEe
Confidence 854 45678999999999998865 6789999999999999999999998888775 499999999 9999999
Q ss_pred EeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEE
Q 017314 232 GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI 311 (373)
Q Consensus 232 g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (373)
|+.|+..++||++.+.+.+.+.+|. ..|+++.|.|+|.-+++|+.|+++++||+|....+..+. ...+...+..++|
T Consensus 205 g~cD~~aklWD~R~~~c~qtF~ghe-sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys--~~~~~~gitSv~F 281 (343)
T KOG0286|consen 205 GGCDKSAKLWDVRSGQCVQTFEGHE-SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS--HDSIICGITSVAF 281 (343)
T ss_pred cccccceeeeeccCcceeEeecccc-cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec--cCcccCCceeEEE
Confidence 9999999999999999999999997 899999999999999999999999999999877766665 3444566777899
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 312 SPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 312 s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
|..|++|.+|..|.++.+||.-.++.+..|.+|...|.++..+|||.-++|||.|.++|||.
T Consensus 282 S~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 282 SKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999999999999999999999999999999999999999995
No 5
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=9.7e-47 Score=307.64 Aligned_cols=290 Identities=25% Similarity=0.442 Sum_probs=260.6
Q ss_pred eEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC-CceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 017314 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT-GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV 159 (373)
Q Consensus 81 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 159 (373)
...+.+|.+.|+.+.|+|+|..|+|||.|..|.+|++.. .+-...+.+|.+.|..+.|++|++.+++++.|++++.||.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 345789999999999999999999999999999999643 3345667899999999999999999999999999999999
Q ss_pred CCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEE
Q 017314 160 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLR 239 (373)
Q Consensus 160 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~ 239 (373)
++|+.++.+++|.+-|..+.........+.|++.|+++|+||+++..++++++......+++|..++..+.+|+-|+.|+
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ik 199 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIK 199 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCcee
Confidence 99999999999999999998666566678899999999999999999999988888899999999999999999999999
Q ss_pred EEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccce----eeeeeecCCeeecCeeeeEECCCC
Q 017314 240 LWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV----CGSLRATGNRVASNWSRSCISPDE 315 (373)
Q Consensus 240 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~ 315 (373)
+||++.+.....+.+|. ..|+.+..+|+|.++++.+.|+++++||++.... +..+.++........-.+..+|++
T Consensus 200 vWd~r~~d~~~~lsGh~-DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~ 278 (338)
T KOG0265|consen 200 VWDLRKNDGLYTLSGHA-DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG 278 (338)
T ss_pred eeccccCcceEEeeccc-CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC
Confidence 99999999999999997 8999999999999999999999999999986543 444444444333333456789999
Q ss_pred cEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEE
Q 017314 316 SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV 371 (373)
Q Consensus 316 ~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~i 371 (373)
.++.+|+.|..+++||......+..+.||.+.|++++|+|...+|.+++.|++|.+
T Consensus 279 ~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 279 TKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 99999999999999999998999999999999999999999999999999999875
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.6e-46 Score=296.83 Aligned_cols=268 Identities=26% Similarity=0.448 Sum_probs=240.0
Q ss_pred CCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe--eEEEeecCCCcEEE
Q 017314 100 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR--VRHTLTGHTDKVCA 177 (373)
Q Consensus 100 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h~~~v~~ 177 (373)
.-+|+|+|.|.+||+|...+|.+..++....+.|..+.+.||++.|++|+ ...||+||++++. ++.+|.+|+..|++
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEE
Confidence 45899999999999999999999999988888999999999999887665 4679999999874 68999999999999
Q ss_pred EEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccc
Q 017314 178 VDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL 257 (373)
Q Consensus 178 ~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 257 (373)
+.|.. +++..+|||.||++||||++.-.+.+.+.+.+.++++..+|+...|++|..+|.|++||+....+...+.....
T Consensus 89 VgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 89 VGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EEEee-cCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 99986 78999999999999999999988888888889999999999999999999999999999999877777777666
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEEcccc------ceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEE
Q 017314 258 AAVTSISLSRSGNIILTSGRDNLHNLFDIRSL------EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS 331 (373)
Q Consensus 258 ~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd 331 (373)
..|.++...|||.+++++...|.+.+|++-.. +++.+++.|...+. ++.+|||++|||++|.|.+++||+
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il----~C~lSPd~k~lat~ssdktv~iwn 243 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL----RCLLSPDVKYLATCSSDKTVKIWN 243 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEE----EEEECCCCcEEEeecCCceEEEEe
Confidence 88999999999999999999999999998653 33444555544443 467899999999999999999999
Q ss_pred ccCc-eEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 332 ISKA-DIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 332 ~~~~-~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
.++. +....+++|...|+.++||.||+||+|||.|+.+++|+
T Consensus 244 ~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 244 TDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred cCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 9987 55678899999999999999999999999999999996
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=9.6e-46 Score=298.99 Aligned_cols=285 Identities=26% Similarity=0.461 Sum_probs=247.7
Q ss_pred ceEEecCccCcEEEEEEcCC-CCEEEEeeCCCcEEEEeCC-----CCceeeeccccccceEEEEEcCCCCEEEEEeCCCc
Q 017314 80 CKHKINAHEGGCASILFEYN-SARLISGGQDKSIKLWDTN-----TGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNN 153 (373)
Q Consensus 80 ~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~~v~iwd~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~ 153 (373)
...++++|.+.|++++..+. .+.|++++.|.++.+|++. .|..++.+.||...|.+++.++||++.++++.|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 34578999999999999876 5689999999999999875 45678899999999999999999999999999999
Q ss_pred EEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeec---CceeEEEEccC--CCE
Q 017314 154 LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH---SNCNALAFSMD--GQT 228 (373)
Q Consensus 154 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~--g~~ 228 (373)
+++||+.+++..+.|.||+..|.++++++ +...++|||.|++|++||+..+ |..++... .-++++.|+|+ ..+
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 99999999999999999999999999998 6789999999999999998644 44454433 34899999998 789
Q ss_pred EEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeee
Q 017314 229 IFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSR 308 (373)
Q Consensus 229 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 308 (373)
|++++.|++|++||+++.+....+.+|. ..++.+.++|||.++++|+.|+.+.+||++..+.+..+.+. .. +..
T Consensus 165 Ivs~s~DktvKvWnl~~~~l~~~~~gh~-~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~-~~----v~s 238 (315)
T KOG0279|consen 165 IVSASWDKTVKVWNLRNCQLRTTFIGHS-GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF-DI----VNS 238 (315)
T ss_pred EEEccCCceEEEEccCCcchhhcccccc-ccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC-Ce----Eee
Confidence 9999999999999999999999998887 78999999999999999999999999999998877666432 22 345
Q ss_pred eEECCCCcEEEEEeCCCcEEEEEccCceEEEEecc----C-----CccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 309 SCISPDESYVAAGSADGSVYIWSISKADIVRTLKE----H-----TAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 309 ~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~----h-----~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
+||+|...+|+.+...+ |+|||+.++..+..|+- . .-.-.+++||+||+.|.+|-.|+.|++|+
T Consensus 239 l~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 239 LCFSPNRYWLCAATATS-IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EEecCCceeEeeccCCc-eEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 89999988887776554 99999999988876642 2 12247889999999999999999999995
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3e-47 Score=323.49 Aligned_cols=247 Identities=23% Similarity=0.397 Sum_probs=233.3
Q ss_pred cceEEecCccCcEEEEEEcCC--CCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 017314 79 TCKHKINAHEGGCASILFEYN--SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV 156 (373)
Q Consensus 79 ~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~i 156 (373)
...++|.+|...|.++.|+|. +..||||+.||+|++|++++..++..+.+|...|..++|+|+|++|++++.|.+-++
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl 287 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL 287 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh
Confidence 346789999999999999997 569999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc-eeEEEEccCCCEEEEEeCC
Q 017314 157 WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHID 235 (373)
Q Consensus 157 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~sg~~d 235 (373)
||+++++.+...+||...|.+++|.+ ++..++|||.|..-||||+++|.++-.+..|.. +..++|+|+|..|+|||.|
T Consensus 288 WD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~D 366 (459)
T KOG0272|consen 288 WDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSD 366 (459)
T ss_pred cccccchhhHhhcccccccceeEecC-CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCC
Confidence 99999999989999999999999988 688999999999999999999999999888864 8999999999999999999
Q ss_pred CcEEEEECCCCeeeEEEecccccceEEEEEcC-CCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCC
Q 017314 236 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR-SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD 314 (373)
Q Consensus 236 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 314 (373)
++++|||++..+.+..+..|. ..|+.+.|+| .|.+|+|++.|+++++|..+++.++.++.+|...+.+ +.++||
T Consensus 367 nt~kVWDLR~r~~ly~ipAH~-nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s----~Dis~d 441 (459)
T KOG0272|consen 367 NTCKVWDLRMRSELYTIPAHS-NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVIS----LDISPD 441 (459)
T ss_pred CcEEEeeecccccceeccccc-chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEE----EEeccC
Confidence 999999999999999999997 7899999998 7889999999999999999999999999999888764 779999
Q ss_pred CcEEEEEeCCCcEEEEE
Q 017314 315 ESYVAAGSADGSVYIWS 331 (373)
Q Consensus 315 ~~~l~sgs~Dg~i~iwd 331 (373)
+++++|++.|.+|++|.
T Consensus 442 ~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 442 SQAIATSSFDRTIKLWR 458 (459)
T ss_pred CceEEEeccCceeeecc
Confidence 99999999999999995
No 9
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.8e-46 Score=308.88 Aligned_cols=289 Identities=26% Similarity=0.451 Sum_probs=269.6
Q ss_pred cceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 017314 79 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 158 (373)
Q Consensus 79 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd 158 (373)
...+.+.+|..+|+.+.|+|+-..+++++.|.+|++||..++++...++||...|.+++|+..|+++++++.|-.+++||
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC-CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc-eeEEEEccCCCEEEEEeCCC
Q 017314 159 VNS-GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDG 236 (373)
Q Consensus 159 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~sg~~dg 236 (373)
..+ .+++..+.+|...|.++.|-|. +++++|++.|.+|+.|++.++.|+.++..|.+ +..+..+.||..+++++.|.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~-gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dq 257 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPL-GDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQ 257 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEec-CCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCc
Confidence 987 5678888999999999999985 68999999999999999999999999998876 88899999999999999999
Q ss_pred cEEEEECCCCeeeEEEecccccceEEEEEcCC---------------CCEEEEeeCCCeEEEEEccccceeeeeeecCCe
Q 017314 237 NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS---------------GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR 301 (373)
Q Consensus 237 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~ 301 (373)
++++|-+.++++...+..|. .+|-+++|.|. ++++++++.|++|++||+.++.++.++.+|.+.
T Consensus 258 tl~vW~~~t~~~k~~lR~hE-h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnw 336 (406)
T KOG0295|consen 258 TLRVWVVATKQCKAELREHE-HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNW 336 (406)
T ss_pred eEEEEEeccchhhhhhhccc-cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccce
Confidence 99999999998888888886 78899988762 358999999999999999999999999999887
Q ss_pred eecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 302 VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 302 ~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
+.. ++|+|.|+||+|+.+|+++++||+.++++++++..|+..|++++|+.+..+++||+-|.++++|.
T Consensus 337 Vr~----~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 337 VRG----VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eee----eEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 754 78999999999999999999999999999999999999999999999989999999999999994
No 10
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-44 Score=306.80 Aligned_cols=296 Identities=24% Similarity=0.402 Sum_probs=252.7
Q ss_pred ccccccccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC---ceeeeccccccceEEEEEcCCCCEEEEE
Q 017314 72 AESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG---SLSSTLYGCLGSVLDLAITHDNRSVIAA 148 (373)
Q Consensus 72 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 148 (373)
...++|.+..+.+..|...|+-+.||++|++||||+.|.+..||++... +..+++.+|..+|.-+.|+||.++|+++
T Consensus 208 ~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 208 GRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred CcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec
Confidence 4566888888999999999999999999999999999999999987544 4478899999999999999999999999
Q ss_pred eCCCcEEEEEcCCCeeEEEee-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEee--cCceeEEEEccC
Q 017314 149 SSSNNLYVWDVNSGRVRHTLT-GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF--HSNCNALAFSMD 225 (373)
Q Consensus 149 s~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~ 225 (373)
+.|..+++||+.+|...+.+. +|...+.+++|.| ++..+++||.|+++..||+.... ...... ...+.++++++|
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~D 365 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYD 365 (519)
T ss_pred CchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCC
Confidence 999999999999999887765 3457788999998 67789999999999999987543 211111 134788999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecC
Q 017314 226 GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASN 305 (373)
Q Consensus 226 g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 305 (373)
|+++++.+.|..|++++..+......+..+ .+|++++++.+++++++.-.+..+.+||+.....+..+.++......
T Consensus 366 gk~vl~v~~d~~i~l~~~e~~~dr~lise~--~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fi- 442 (519)
T KOG0293|consen 366 GKYVLLVTVDKKIRLYNREARVDRGLISEE--QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFI- 442 (519)
T ss_pred CcEEEEEecccceeeechhhhhhhcccccc--CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceE-
Confidence 999999999999999998775544444444 58999999999999999999999999999987777777666543322
Q ss_pred eeeeEECC-CCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCC-CcEEEEeCCCeEEEcC
Q 017314 306 WSRSCISP-DESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLG-KPLASADKNGVVCVWT 373 (373)
Q Consensus 306 ~~~~~~s~-~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g-~~l~s~s~dg~i~iW~ 373 (373)
.+.||.. +..+++|||+|+.|+||+..+++++.+|.||...|++|+|+|.. .++||||.||+||||.
T Consensus 443 -IrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 443 -IRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred -EEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 2356764 55899999999999999999999999999999999999999965 5889999999999994
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-45 Score=307.29 Aligned_cols=246 Identities=28% Similarity=0.469 Sum_probs=218.8
Q ss_pred cceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCce-eeeccccccceEEEEEcC-----CCCEEEEEeCCC
Q 017314 79 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL-SSTLYGCLGSVLDLAITH-----DNRSVIAASSSN 152 (373)
Q Consensus 79 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~-----~~~~l~s~s~d~ 152 (373)
+..++.++|...|.+++|+|||+.||||+.||+|++||.++|++ ...+.+|...|++++|.| ..++|+++|.||
T Consensus 148 Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg 227 (480)
T KOG0271|consen 148 TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDG 227 (480)
T ss_pred CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCC
Confidence 35678899999999999999999999999999999999999866 467899999999999854 567999999999
Q ss_pred cEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEe--------------------
Q 017314 153 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-------------------- 212 (373)
Q Consensus 153 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~-------------------- 212 (373)
+|+|||+..++++..+.||+.+|+|+.|. ...+++|||.|++|++|+...|.+.+.+.
T Consensus 228 ~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtg 305 (480)
T KOG0271|consen 228 SVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTG 305 (480)
T ss_pred CEEEEEccCceEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcc
Confidence 99999999999999999999999999985 46799999999999999876543211111
Q ss_pred -----------------------------------------------------------ec-CceeEEEEccCCCEEEEE
Q 017314 213 -----------------------------------------------------------FH-SNCNALAFSMDGQTIFSG 232 (373)
Q Consensus 213 -----------------------------------------------------------~~-~~~~~~~~~~~g~~l~sg 232 (373)
.| ..++.+.||||+++++++
T Consensus 306 af~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASa 385 (480)
T KOG0271|consen 306 AFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASA 385 (480)
T ss_pred ccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEe
Confidence 01 126789999999999999
Q ss_pred eCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEEC
Q 017314 233 HIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS 312 (373)
Q Consensus 233 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s 312 (373)
+.|..|++||.++|+.+..+.+|- ..|+.++|+.|.++|++|+.|.++++||+++.+....+.+|...+.. +..+
T Consensus 386 SFDkSVkLW~g~tGk~lasfRGHv-~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~----vDws 460 (480)
T KOG0271|consen 386 SFDKSVKLWDGRTGKFLASFRGHV-AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFA----VDWS 460 (480)
T ss_pred ecccceeeeeCCCcchhhhhhhcc-ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEE----EEec
Confidence 999999999999999999999986 89999999999999999999999999999999998889888887753 5679
Q ss_pred CCCcEEEEEeCCCcEEEEE
Q 017314 313 PDESYVAAGSADGSVYIWS 331 (373)
Q Consensus 313 ~~~~~l~sgs~Dg~i~iwd 331 (373)
|||+.+++|+.|..+++|.
T Consensus 461 pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCCceeecCCCceEEEeec
Confidence 9999999999999999994
No 12
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.1e-44 Score=299.31 Aligned_cols=289 Identities=20% Similarity=0.417 Sum_probs=257.3
Q ss_pred cccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 017314 77 PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV 156 (373)
Q Consensus 77 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~i 156 (373)
|-+..+.+.+|.+.|.++++.|.+.+|+||+.|++++|||+.+|++..++.||...|..+++++-..++++++.|+.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 33445668899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC-ceeEEEEccCCCEEEEEeCC
Q 017314 157 WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHID 235 (373)
Q Consensus 157 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sg~~d 235 (373)
||++..+.++.+.||-..|.|++.+| ..+.++||+.|.++||||+++...+..+..|. .+..+.+.|-...+++|+.|
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 99999999999999999999999998 46789999999999999999999999998775 48889999888889999999
Q ss_pred CcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCC
Q 017314 236 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE 315 (373)
Q Consensus 236 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 315 (373)
++|++||++.|+....+..|. ..+.+++.+|....+++++.|+ ++-|++..++.++.+..+...+. .+.... .
T Consensus 299 ~tvrlWDl~agkt~~tlt~hk-ksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iin----tl~~ns-D 371 (460)
T KOG0285|consen 299 STVRLWDLRAGKTMITLTHHK-KSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIIN----TLSVNS-D 371 (460)
T ss_pred ceEEEeeeccCceeEeeeccc-ceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceee----eeeecc-C
Confidence 999999999999998888876 7899999999999999999886 68899998888887776655443 244444 4
Q ss_pred cEEEEEeCCCcEEEEEccCceEEEEec--------cCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 316 SYVAAGSADGSVYIWSISKADIVRTLK--------EHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 316 ~~l~sgs~Dg~i~iwd~~~~~~~~~l~--------~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
.++++|++.|.+.+||.+++...+.++ ..+..|++.+|...|..|+||..|++|++|.
T Consensus 372 ~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 372 GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 588899999999999999987766542 1345789999999999999999999999993
No 13
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4e-45 Score=315.55 Aligned_cols=300 Identities=22% Similarity=0.394 Sum_probs=259.1
Q ss_pred cccccccceEEecCccCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCC-CceeeeccccccceEEEEEcCCCCEEEEEeC
Q 017314 73 ESTVPSTCKHKINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNT-GSLSSTLYGCLGSVLDLAITHDNRSVIAASS 150 (373)
Q Consensus 73 ~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 150 (373)
...+|....+.+.+|..+|+++.|.| .+.+|+|||.|+.|+||++-. +.++.++.+|..+|.+++|+++|..++++|.
T Consensus 199 rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 199 RCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF 278 (503)
T ss_pred eeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeec
Confidence 45578888899999999999999999 889999999999999999866 8899999999999999999999999999999
Q ss_pred CCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC-ceeEEEEccCCCEE
Q 017314 151 SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTI 229 (373)
Q Consensus 151 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~g~~l 229 (373)
|+++++||+++|++...+.. ...+.|+.++|.+.+.+++|+.|+.|+.||++++..++++..|. .++.+.|-++|+++
T Consensus 279 D~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRF 357 (503)
T ss_pred ceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceE
Confidence 99999999999999888752 34568899999877999999999999999999999888776664 48899999999999
Q ss_pred EEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeee-eecCCeeecCeee
Q 017314 230 FSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL-RATGNRVASNWSR 308 (373)
Q Consensus 230 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~ 308 (373)
++.+.|++++||+.+.+-.++.+.........++..+|+++++++.+.|+.+.+|.+...-..... ...+..+..--..
T Consensus 358 issSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~ 437 (503)
T KOG0282|consen 358 ISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ 437 (503)
T ss_pred eeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence 999999999999999887776665555457889999999999999999999999986532111111 1112222222234
Q ss_pred eEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCC-CcEEEEeCCCeEEEcC
Q 017314 309 SCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLG-KPLASADKNGVVCVWT 373 (373)
Q Consensus 309 ~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g-~~l~s~s~dg~i~iW~ 373 (373)
+.|||||.+|++|+.||.+.+||.++-+++..++.|.+++..+.|+|.. ..+||+|.||.|++|+
T Consensus 438 v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 438 VDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 6799999999999999999999999999999999999999999999975 5899999999999996
No 14
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.7e-42 Score=322.20 Aligned_cols=291 Identities=30% Similarity=0.509 Sum_probs=261.7
Q ss_pred eEEecCc-cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCc--eeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 017314 81 KHKINAH-EGGCASILFEYNSARLISGGQDKSIKLWDTNTGS--LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW 157 (373)
Q Consensus 81 ~~~~~~h-~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iw 157 (373)
...+..| ...|.++.|+++|+.|++++.|+.+++|+..+.+ ....+.+|...|.+++|+|++.++++++.|++++||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 3444444 7889999999999999999999999999997777 677788999999999999999999999999999999
Q ss_pred Ec-CCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC-ceeEEEEccCCCEEEEEeCC
Q 017314 158 DV-NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHID 235 (373)
Q Consensus 158 d~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sg~~d 235 (373)
|+ ..+..++++.+|...|++++|+|.. +.+++|+.|++|++||++++.++..+..|. .+++++|+++|.+|++++.|
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 99 5568999999999999999999965 899999999999999999999999998887 58999999999999999999
Q ss_pred CcEEEEECCCCe--eeEEEeccccc-ceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEEC
Q 017314 236 GNLRLWDIQTGK--LLSEVAAHSLA-AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS 312 (373)
Q Consensus 236 g~i~iwd~~~~~--~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s 312 (373)
+.|++||+.++. +...+..+... .+++++|+|++.++++++.|+.+++||++.......+..+.....+ +.....+
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~-~~~~~~~ 388 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRC-IFSPTLS 388 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCccee-Eeccccc
Confidence 999999999998 56677666645 7999999999999999999999999999999888888877665322 2223357
Q ss_pred CCCcEEEEEeCCCcEEEEEccCceEEEEeccC-CccEEEEEEcCCCCcEEEEe--CCCeEEEcC
Q 017314 313 PDESYVAAGSADGSVYIWSISKADIVRTLKEH-TAPVLSCSWSGLGKPLASAD--KNGVVCVWT 373 (373)
Q Consensus 313 ~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h-~~~V~~~~~s~~g~~l~s~s--~dg~i~iW~ 373 (373)
+.+.++++|+.|+.|++|++.++..+..+.+| ...|..++|+|..+++++++ .|+.|++|.
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 89999999999999999999999999999999 89999999999999999998 799999994
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3e-42 Score=280.46 Aligned_cols=264 Identities=25% Similarity=0.411 Sum_probs=233.7
Q ss_pred cccccceeeccccCccccccccccccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC------ceeeecc
Q 017314 54 KQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG------SLSSTLY 127 (373)
Q Consensus 54 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~------~~~~~~~ 127 (373)
+.+.||.+.+|+.-. ....|.++-....|...+|+|.|+.+|+||.|....||++.+. ++...+.
T Consensus 72 SaSqDGklIvWDs~T---------tnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~ 142 (343)
T KOG0286|consen 72 SASQDGKLIVWDSFT---------TNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELA 142 (343)
T ss_pred eeccCCeEEEEEccc---------ccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeec
Confidence 344555555554332 2345666667788999999999999999999999999999865 4567799
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCee
Q 017314 128 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC 207 (373)
Q Consensus 128 ~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~ 207 (373)
+|.+-+.++.|.+ +..|+++|.|.++-+||+++++.+..|.+|+..|.+++++|.+.+.++||+.|++.++||++.+.+
T Consensus 143 gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c 221 (343)
T KOG0286|consen 143 GHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC 221 (343)
T ss_pred CccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce
Confidence 9999999999987 567999999999999999999999999999999999999998899999999999999999999999
Q ss_pred eeEEeecC-ceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEeccc-ccceEEEEEcCCCCEEEEeeCCCeEEEEE
Q 017314 208 VNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRDNLHNLFD 285 (373)
Q Consensus 208 ~~~~~~~~-~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~i~~~d 285 (373)
+++|..|. .+++++|.|+|.-+++|+.|+++|+||++..+.+..+.... ...|++++|+..|++|.+|..|..+.+||
T Consensus 222 ~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 222 VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred eEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEee
Confidence 99998885 59999999999999999999999999999988887775432 35799999999999999999999999999
Q ss_pred ccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEE
Q 017314 286 IRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS 331 (373)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd 331 (373)
.-..+.+..+.+|.+++.+ +.++|||.-+++||.|.+++||.
T Consensus 302 tlk~e~vg~L~GHeNRvSc----l~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 302 TLKGERVGVLAGHENRVSC----LGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccccceEEEeeccCCeeEE----EEECCCCcEEEecchhHheeecC
Confidence 9999999999999988864 67899999999999999999994
No 16
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-42 Score=271.51 Aligned_cols=284 Identities=25% Similarity=0.457 Sum_probs=248.1
Q ss_pred cccccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcE
Q 017314 75 TVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNL 154 (373)
Q Consensus 75 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i 154 (373)
..|.+..+.+..|+++|.++.|+-||++.+++|.|++||+|+...+.+++++.+|...|.+++.+.|+..+++++.|+.|
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceE
Confidence 35666677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCe--eeeEEe-ecCceeEEEEccCCCEEEE
Q 017314 155 YVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY--CVNTII-FHSNCNALAFSMDGQTIFS 231 (373)
Q Consensus 155 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~--~~~~~~-~~~~~~~~~~~~~g~~l~s 231 (373)
.+||+++|+..+.+.+|...|..+.|+. +...++|||.|.++++||.++.. +++.+. ....+.++.+ .+..|++
T Consensus 84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIva 160 (307)
T KOG0316|consen 84 QVWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVA 160 (307)
T ss_pred EEEEcccCeeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEe
Confidence 9999999999999999999999999987 67789999999999999998653 344332 2234555555 4678999
Q ss_pred EeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEE
Q 017314 232 GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI 311 (373)
Q Consensus 232 g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (373)
|+.||++|.||++.|+......+| +|++++|+++++..+.++-|+++++.|-.+++....+.+|.+.-.. ..+|+
T Consensus 161 GS~DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eyk--ldc~l 235 (307)
T KOG0316|consen 161 GSVDGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYK--LDCCL 235 (307)
T ss_pred eccCCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceee--eeeee
Confidence 999999999999999987766654 7999999999999999999999999999999998888887654322 24678
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCcc-EEEEEEcCCCCcEEEEeCC
Q 017314 312 SPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAP-VLSCSWSGLGKPLASADKN 366 (373)
Q Consensus 312 s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~-V~~~~~s~~g~~l~s~s~d 366 (373)
......+++||+||.|++||+..+..+..+..|..+ |.+++++|.-.-|.++...
T Consensus 236 ~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~ 291 (307)
T KOG0316|consen 236 NQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH 291 (307)
T ss_pred cccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC
Confidence 888899999999999999999999999999888887 8999999986656555433
No 17
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-42 Score=277.95 Aligned_cols=278 Identities=23% Similarity=0.365 Sum_probs=229.2
Q ss_pred cHHHHhcccccceeeccccCccccccccccccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeecc
Q 017314 48 GLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY 127 (373)
Q Consensus 48 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 127 (373)
+.+.+.+.+.|..+..|+.... ...-....+.|+||+..|..+..++||++.+|+|.|+++|+||+.+++....|.
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~d----d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~ 102 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSD----DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFV 102 (315)
T ss_pred CCceEEEcccceEEEEEEeccC----ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEE
Confidence 3445666677777776654432 122234577899999999999999999999999999999999999999999999
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecC--CCcEEEEEEeeCC-CCEEEEEeCCCcEEEEEccC
Q 017314 128 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGH--TDKVCAVDVSKIS-SRHVVSAAYDRTLKVWDLHK 204 (373)
Q Consensus 128 ~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~-~~~~~s~s~D~~i~vwd~~~ 204 (373)
||...|.+++|++|++.+++||.|++|++|++... +..++..+ ++.|.|+.|+|.. ..+|+++|+|++||+||+++
T Consensus 103 GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~ 181 (315)
T KOG0279|consen 103 GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN 181 (315)
T ss_pred ecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC
Confidence 99999999999999999999999999999998654 44455443 7899999999975 67899999999999999999
Q ss_pred CeeeeEEeecCc-eeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEE
Q 017314 205 GYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL 283 (373)
Q Consensus 205 ~~~~~~~~~~~~-~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~ 283 (373)
.+....+..|.. ++.+++||||..+++|+.||.+.+||++.++.+..+... ..|.+++|+|+...|..+ .+..|+|
T Consensus 182 ~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~--~~v~sl~fspnrywL~~a-t~~sIkI 258 (315)
T KOG0279|consen 182 CQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF--DIVNSLCFSPNRYWLCAA-TATSIKI 258 (315)
T ss_pred cchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC--CeEeeEEecCCceeEeec-cCCceEE
Confidence 888888877765 899999999999999999999999999999998777654 689999999986655554 5556999
Q ss_pred EEccccceeeeeeecCCee----ecC-eeeeEECCCCcEEEEEeCCCcEEEEEcc
Q 017314 284 FDIRSLEVCGSLRATGNRV----ASN-WSRSCISPDESYVAAGSADGSVYIWSIS 333 (373)
Q Consensus 284 ~d~~~~~~~~~~~~~~~~~----~~~-~~~~~~s~~~~~l~sgs~Dg~i~iwd~~ 333 (373)
||+.+..++..+....... ..+ ...+++++||+.|.+|-.|+.|++|.+.
T Consensus 259 wdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 259 WDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 9999887776665322111 111 1235689999999999999999999875
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-41 Score=292.08 Aligned_cols=298 Identities=20% Similarity=0.346 Sum_probs=253.6
Q ss_pred CccccccccccccceEEecCccCcEEEEEEcCCCC-EEEEeeCCCcEEEEeCCCC--c--eeeeccc----------ccc
Q 017314 67 GAEFFAESTVPSTCKHKINAHEGGCASILFEYNSA-RLISGGQDKSIKLWDTNTG--S--LSSTLYG----------CLG 131 (373)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~v~iwd~~~~--~--~~~~~~~----------~~~ 131 (373)
.+++.....+|......++ |+.+|.+.+|+|-.. .|++|+.|.+.|+|++... . ....++. ...
T Consensus 158 ~~~i~~~~~I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nk 236 (524)
T KOG0273|consen 158 PMEIDGGVEIPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNK 236 (524)
T ss_pred ceeecccccccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccC
Confidence 3344444556666666666 999999999999776 8999999999999998641 1 1111211 135
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEE
Q 017314 132 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI 211 (373)
Q Consensus 132 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~ 211 (373)
.|++++|+.+|..|++|+.||.++||+. +|.++.+|..|+++|.++.|+. .+++|++++.|+++.+||..++...+.+
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEEee
Confidence 7999999999999999999999999996 4667889999999999999987 6889999999999999999999999999
Q ss_pred eecCce-eEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccc
Q 017314 212 IFHSNC-NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE 290 (373)
Q Consensus 212 ~~~~~~-~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~ 290 (373)
.+|+.. ..+.|-. ...+++++.|+.|+++-+....++.++.+|+ .+|.++.|+|.|.+|++|+.|+++++|......
T Consensus 315 ~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~-g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 315 EFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHH-GEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred eeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeeccc-CceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence 988776 5677764 4568899999999999999889999999987 899999999999999999999999999988777
Q ss_pred eeeeeeecCCeeecCeeeeEECC---------CCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEE
Q 017314 291 VCGSLRATGNRVASNWSRSCISP---------DESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLA 361 (373)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~s~---------~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~ 361 (373)
....+..|...+.. ...+| .+..+++++.|++|++||+..+.++++|..|..||.+++|||+|+|+|
T Consensus 393 ~~~~l~~Hskei~t----~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylA 468 (524)
T KOG0273|consen 393 SVHDLQAHSKEIYT----IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLA 468 (524)
T ss_pred chhhhhhhccceee----EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEE
Confidence 77777777655443 22333 456899999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEcC
Q 017314 362 SADKNGVVCVWT 373 (373)
Q Consensus 362 s~s~dg~i~iW~ 373 (373)
+|+.||.|+||+
T Consensus 469 sGs~dg~V~iws 480 (524)
T KOG0273|consen 469 SGSLDGCVHIWS 480 (524)
T ss_pred ecCCCCeeEecc
Confidence 999999999995
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.2e-42 Score=311.27 Aligned_cols=285 Identities=22% Similarity=0.421 Sum_probs=249.4
Q ss_pred cccccccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCc-------------------------------
Q 017314 73 ESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS------------------------------- 121 (373)
Q Consensus 73 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~------------------------------- 121 (373)
...+|+.|..++.--...++|..|++|++.||.|-.|..|++|.+...+
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~ 442 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG 442 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc
Confidence 4567888988887667889999999999999999999999999876311
Q ss_pred eeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 017314 122 LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD 201 (373)
Q Consensus 122 ~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd 201 (373)
...++.||.++|..+.|+|+.++|+++|.|.++|+|.+.+..++..++||..+|+.+.|+| .+.+++|||.|++-++|.
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWS 521 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeee
Confidence 1245789999999999999999999999999999999999999999999999999999997 689999999999999999
Q ss_pred ccCCeeeeEEeec-CceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCe
Q 017314 202 LHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL 280 (373)
Q Consensus 202 ~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 280 (373)
.....+.+.+..| +.+.|+.|+|+..|+++||.|.+||+||+.+|..++.+.+|. .+|++++|+|+|++|++|+.|+.
T Consensus 522 ~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~-~~V~al~~Sp~Gr~LaSg~ed~~ 600 (707)
T KOG0263|consen 522 TDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK-GPVTALAFSPCGRYLASGDEDGL 600 (707)
T ss_pred cccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC-CceEEEEEcCCCceEeecccCCc
Confidence 9988888888777 459999999999999999999999999999999999999987 89999999999999999999999
Q ss_pred EEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCce------------------------
Q 017314 281 HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD------------------------ 336 (373)
Q Consensus 281 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~------------------------ 336 (373)
|++||+.++..+..+..|...+. .+.|+.||..||+|+.|.+|++||+..-.
T Consensus 601 I~iWDl~~~~~v~~l~~Ht~ti~----SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (707)
T KOG0263|consen 601 IKIWDLANGSLVKQLKGHTGTIY----SLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSL 676 (707)
T ss_pred EEEEEcCCCcchhhhhcccCcee----EEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcc
Confidence 99999999999888888854443 47799999999999999999999985422
Q ss_pred EEEEeccCCccEEEEEEcCCCCcEEEE
Q 017314 337 IVRTLKEHTAPVLSCSWSGLGKPLASA 363 (373)
Q Consensus 337 ~~~~l~~h~~~V~~~~~s~~g~~l~s~ 363 (373)
++.++..-..+|..+.|..-+-.|+.|
T Consensus 677 llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 677 LLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred eeeeeeecCceEEEEEEeccceeEEec
Confidence 233344445688999998755444443
No 20
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.9e-40 Score=287.89 Aligned_cols=286 Identities=36% Similarity=0.637 Sum_probs=255.9
Q ss_pred EEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 017314 82 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 161 (373)
Q Consensus 82 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 161 (373)
+++.+|.++|+++.|+|+++.|++++.|+.|++||+.++.....+..|...+..+.|+++++.+++++.|+.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 35678999999999999999999999999999999998888888888999999999999999999999999999999999
Q ss_pred CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeec-CceeEEEEccCCCEEEEEeCCCcEEE
Q 017314 162 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRL 240 (373)
Q Consensus 162 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~sg~~dg~i~i 240 (373)
++....+..|...+.++.+++. ..++++++.|+.+++||+.++.....+..+ ..+.+++++|++.++++++.|+.|++
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 8888889999999999999874 677888888999999999988877777644 35899999999999999888999999
Q ss_pred EECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEE
Q 017314 241 WDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAA 320 (373)
Q Consensus 241 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 320 (373)
||+++++.+..+..+. ..+.++.|+|+++.+++++.|+.+++||++..+....+..+... ...++++|++.++++
T Consensus 162 ~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~----i~~~~~~~~~~~~~~ 236 (289)
T cd00200 162 WDLRTGKCVATLTGHT-GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG----VNSVAFSPDGYLLAS 236 (289)
T ss_pred EEccccccceeEecCc-cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCc----eEEEEEcCCCcEEEE
Confidence 9999888888887665 68999999999999999999999999999987776666444432 334678999999999
Q ss_pred EeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 321 GSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 321 gs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
++.||.|++|++.+++....+..|..+|.+++|+|++++|++++.||.|++|+
T Consensus 237 ~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999999999999999999999999999999999999999999999996
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.9e-43 Score=295.40 Aligned_cols=282 Identities=22% Similarity=0.404 Sum_probs=244.9
Q ss_pred CccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeE
Q 017314 86 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR 165 (373)
Q Consensus 86 ~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 165 (373)
.-..+|..+.|.|+|.+|++|+..|.+-+|+..+-.-...+..|..+|.++.|++++.++++|+.+|.|++|+.+-....
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk 173 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK 173 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH
Confidence 34568999999999999999999999999997554444456789999999999999999999999999999998755443
Q ss_pred EEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC-ceeEEEEccCCCEEEEEeCCCcEEEEECC
Q 017314 166 HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQ 244 (373)
Q Consensus 166 ~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sg~~dg~i~iwd~~ 244 (373)
.....|...|++++|+| ....++|||.|++|+|||.........+..|. .+.++.|+|....|++|+.|..|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 33344558999999999 45679999999999999998877666666664 59999999999999999999999999999
Q ss_pred CCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECC-CCcEEEEEeC
Q 017314 245 TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP-DESYVAAGSA 323 (373)
Q Consensus 245 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~sgs~ 323 (373)
++.++.++..|. ..|..+.|+|++++|+++|.|..+++||+++.+.+..+++|...+.. +..+| ...+|.+|+.
T Consensus 253 Sg~cl~tlh~HK-ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~----~~WhP~~~~lftsgg~ 327 (464)
T KOG0284|consen 253 SGSCLATLHGHK-NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTS----LTWHPLNESLFTSGGS 327 (464)
T ss_pred Ccchhhhhhhcc-ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhee----eccccccccceeeccC
Confidence 999999999887 79999999999999999999999999999988888888887766543 34455 4578999999
Q ss_pred CCcEEEEEccCceEEEEec-cCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 324 DGSVYIWSISKADIVRTLK-EHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 324 Dg~i~iwd~~~~~~~~~l~-~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
||.|..|.+...+++..+. +|...|++++|+|-|..|++|+.|.++++|.
T Consensus 328 Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 328 DGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred CCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999998666666554 6999999999999999999999999999994
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-40 Score=265.45 Aligned_cols=287 Identities=18% Similarity=0.338 Sum_probs=242.9
Q ss_pred HHhcccccceeeccccCccccccccccccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCc--eeeeccc
Q 017314 51 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS--LSSTLYG 128 (373)
Q Consensus 51 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~ 128 (373)
-|++.+.|..+|.|+... ..|.+++....+.|..+.+.||++.||+|+. ..||+||++++. ++.++.+
T Consensus 12 iLvsA~YDhTIRfWqa~t---------G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~ 81 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALT---------GICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEG 81 (311)
T ss_pred EEEeccCcceeeeeehhc---------CeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEec
Confidence 356778888888887644 4688899888889999999999999998885 689999999875 4788999
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeee
Q 017314 129 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV 208 (373)
Q Consensus 129 ~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~ 208 (373)
|.+.|+++.|..||+.+++||.||++||||++...+.+.++ |..+|+++..+| ....|++|..+|.|++||+....+.
T Consensus 82 h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 82 HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred cCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccc
Confidence 99999999999999999999999999999999977776665 779999999998 5668999999999999999988776
Q ss_pred eEEeec--CceeEEEEccCCCEEEEEeCCCcEEEEECCCCe------eeEEEecccccceEEEEEcCCCCEEEEeeCCCe
Q 017314 209 NTIIFH--SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK------LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL 280 (373)
Q Consensus 209 ~~~~~~--~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 280 (373)
..+... ..+.++.+.|||.+++.+...|+..+|++.+.+ ++.++..|. .-+..+-+||++++|+++|.|.+
T Consensus 160 ~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~-~~il~C~lSPd~k~lat~ssdkt 238 (311)
T KOG0315|consen 160 HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN-GHILRCLLSPDVKYLATCSSDKT 238 (311)
T ss_pred cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheeccc-ceEEEEEECCCCcEEEeecCCce
Confidence 665443 347899999999999999999999999987643 445566676 67999999999999999999999
Q ss_pred EEEEEcccc-ceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEc
Q 017314 281 HNLFDIRSL-EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWS 354 (373)
Q Consensus 281 i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s 354 (373)
+++|+.... +....+.++...+ ..++||.||+||++|+.|+.+++|++..++.+..+.+|..+..|++..
T Consensus 239 v~iwn~~~~~kle~~l~gh~rWv----Wdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 239 VKIWNTDDFFKLELVLTGHQRWV----WDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EEEEecCCceeeEEEeecCCceE----EeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 999999876 2222333333222 246799999999999999999999999999999999999888888764
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.8e-40 Score=283.82 Aligned_cols=276 Identities=24% Similarity=0.451 Sum_probs=251.0
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEE
Q 017314 88 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT 167 (373)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 167 (373)
+..|++++|+.+|+.||+|+.||.+|||+. +|....++..|.++|.++.|+.+|++|++++.|+++.+||..+++....
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 357999999999999999999999999996 5777889999999999999999999999999999999999999999999
Q ss_pred eecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC-ceeEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 017314 168 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTG 246 (373)
Q Consensus 168 ~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~ 246 (373)
+.-|..+-..+.|- +...+++++.|+.|+|+.+....++.++.+|. +++++.|.|.|.+|++++.|++++||.....
T Consensus 314 f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred eeeccCCccceEEe--cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence 99999886666664 45679999999999999999889999988775 5999999999999999999999999999888
Q ss_pred eeeEEEecccccceEEEEEcCCC---------CEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcE
Q 017314 247 KLLSEVAAHSLAAVTSISLSRSG---------NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY 317 (373)
Q Consensus 247 ~~~~~~~~~~~~~v~~~~~~~~~---------~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 317 (373)
.....+..|. ..|..+.|+|+| ..+++++.|+++++||+..+.++..+..|..++. .++|+|+|+|
T Consensus 392 ~~~~~l~~Hs-kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVy----svafS~~g~y 466 (524)
T KOG0273|consen 392 NSVHDLQAHS-KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVY----SVAFSPNGRY 466 (524)
T ss_pred cchhhhhhhc-cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceE----EEEecCCCcE
Confidence 8888898887 789999999975 3699999999999999999999999887777665 4789999999
Q ss_pred EEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEc
Q 017314 318 VAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372 (373)
Q Consensus 318 l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW 372 (373)
+|+|+-||.|.||+..+++.++.+.+. +.|..++|+-+|..|..+-.||.+++-
T Consensus 467 lAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 467 LASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVL 520 (524)
T ss_pred EEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEE
Confidence 999999999999999999999999765 459999999999999999999988763
No 24
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.2e-39 Score=259.51 Aligned_cols=281 Identities=20% Similarity=0.396 Sum_probs=229.7
Q ss_pred ceEEecCccCcEEEEEEcCC-CCEEEEeeCCCcEEEEeCCCC---ceeeec-cccccceEEEEEcCCCCEEEEEeCCCcE
Q 017314 80 CKHKINAHEGGCASILFEYN-SARLISGGQDKSIKLWDTNTG---SLSSTL-YGCLGSVLDLAITHDNRSVIAASSSNNL 154 (373)
Q Consensus 80 ~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~l~s~s~d~~i 154 (373)
..+++.+|.+.+..++|+|- |..|||||.|+.||||+...+ .+...+ .+|...|.+++|+|.|++|++||.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 35678899999999999998 889999999999999998843 233333 3688999999999999999999999999
Q ss_pred EEEEcCCC--eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCC---eeeeEEeecC-ceeEEEEccCCCE
Q 017314 155 YVWDVNSG--RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG---YCVNTIIFHS-NCNALAFSMDGQT 228 (373)
Q Consensus 155 ~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~---~~~~~~~~~~-~~~~~~~~~~g~~ 228 (373)
-||.-..+ +++.+++||..+|.+++|++ ++++|+|||.|++|-+|.+..+ .|...+..|. .+..+.|+|...+
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 99987654 67899999999999999998 7899999999999999998754 3445555554 5899999999999
Q ss_pred EEEEeCCCcEEEEECC---CCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeee-cCCeeec
Q 017314 229 IFSGHIDGNLRLWDIQ---TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA-TGNRVAS 304 (373)
Q Consensus 229 l~sg~~dg~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~ 304 (373)
|+++++|.+|++|+-. .-.++.++.+|+ ..|-+++|+|.|..|++++.|+++++|..... +.. +...+.
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~-~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y- 237 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHE-NTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALY- 237 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCcc-ceEEEEEecCCCceEEEecCCcceEeeeeccC-----cchhcccceE-
Confidence 9999999999999876 336788888887 68999999999999999999999999985521 111 111111
Q ss_pred CeeeeEECCCCcEEEEEeCCCcEEEEEccCce--E----E-EEeccCCccEEEEEEcCC-CCcEEEEeCCCeEEEcC
Q 017314 305 NWSRSCISPDESYVAAGSADGSVYIWSISKAD--I----V-RTLKEHTAPVLSCSWSGL-GKPLASADKNGVVCVWT 373 (373)
Q Consensus 305 ~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~--~----~-~~l~~h~~~V~~~~~s~~-g~~l~s~s~dg~i~iW~ 373 (373)
.+.+ +...||||+.|+.|+++.-...- + + +.-..|...|+++.|+|. ...|+++|.||.|++|.
T Consensus 238 ---~v~W--~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 238 ---DVPW--DNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred ---eeee--cccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 1222 35689999999999999766421 1 1 122358889999999995 67999999999999994
No 25
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.5e-39 Score=320.97 Aligned_cols=283 Identities=19% Similarity=0.335 Sum_probs=235.8
Q ss_pred ecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC----c----eeeeccccccceEEEEEcCC-CCEEEEEeCCCcE
Q 017314 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG----S----LSSTLYGCLGSVLDLAITHD-NRSVIAASSSNNL 154 (373)
Q Consensus 84 ~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~----~----~~~~~~~~~~~v~~~~~~~~-~~~l~s~s~d~~i 154 (373)
+..|.+.|.+++|++++++|++||.|++|+|||..+. . ....+. +...+.+++|++. +.+|++++.|++|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 3458999999999999999999999999999997542 1 112222 3457889999874 6899999999999
Q ss_pred EEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEc-cCCCEEEEEe
Q 017314 155 YVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFS-MDGQTIFSGH 233 (373)
Q Consensus 155 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~g~~l~sg~ 233 (373)
++||+.+++.+..+.+|.+.|++++|++.++.+++||+.|++|++||++++.++.++..+..+.++.|+ ++|.+|++|+
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs 637 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGS 637 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEe
Confidence 999999999999999999999999999867889999999999999999999888888777778899995 5799999999
Q ss_pred CCCcEEEEECCCCe-eeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEcccc------ceeeeeeecCCeeecCe
Q 017314 234 IDGNLRLWDIQTGK-LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL------EVCGSLRATGNRVASNW 306 (373)
Q Consensus 234 ~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~------~~~~~~~~~~~~~~~~~ 306 (373)
.||.|++||+++++ .+..+..|. ..|.++.|. ++.+|++++.|+.+++||++.. ..+..+.+|...+
T Consensus 638 ~dg~I~iwD~~~~~~~~~~~~~h~-~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i---- 711 (793)
T PLN00181 638 ADHKVYYYDLRNPKLPLCTMIGHS-KTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK---- 711 (793)
T ss_pred CCCeEEEEECCCCCccceEecCCC-CCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCe----
Confidence 99999999998765 455666665 789999997 6789999999999999999743 3344555544332
Q ss_pred eeeEECCCCcEEEEEeCCCcEEEEEccCceEEEE-------------eccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 307 SRSCISPDESYVAAGSADGSVYIWSISKADIVRT-------------LKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 307 ~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~-------------l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
..++++|++.+|++|+.||.|++|+.....++.. ...|...|.+++|+|++.+|++|+.||.|+||+
T Consensus 712 ~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 712 NFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred eEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 2367899999999999999999999865543322 123556799999999999999999999999995
No 26
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-38 Score=276.06 Aligned_cols=292 Identities=24% Similarity=0.404 Sum_probs=240.8
Q ss_pred ccccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeecc---ccccceEEEEEcCCCCEEEEEeCCC
Q 017314 76 VPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY---GCLGSVLDLAITHDNRSVIAASSSN 152 (373)
Q Consensus 76 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~s~d~ 152 (373)
.|.+...+++.|...|.++.|+|||.+++|+|.||+|.+||-.+++.+..+. +|.+.|.+++|+||+..++++|.|.
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk 257 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK 257 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc
Confidence 4667778899999999999999999999999999999999999999999888 8999999999999999999999999
Q ss_pred cEEEEEcCCCeeE-------------------------------------------EEeecCCCcEEEEEEeeCCCCEEE
Q 017314 153 NLYVWDVNSGRVR-------------------------------------------HTLTGHTDKVCAVDVSKISSRHVV 189 (373)
Q Consensus 153 ~i~iwd~~~~~~~-------------------------------------------~~~~~h~~~v~~~~~~~~~~~~~~ 189 (373)
++||||+.+.+++ +++.||...|+++..++ ++.+|+
T Consensus 258 t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~ 336 (603)
T KOG0318|consen 258 TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIY 336 (603)
T ss_pred eEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEE
Confidence 9999999765432 34568999999999998 568999
Q ss_pred EEeCCCcEEEEEccCCeeee-------------------------------EEee-------------c-----------
Q 017314 190 SAAYDRTLKVWDLHKGYCVN-------------------------------TIIF-------------H----------- 214 (373)
Q Consensus 190 s~s~D~~i~vwd~~~~~~~~-------------------------------~~~~-------------~----------- 214 (373)
|||.||.|.-||..++..-+ .+.. .
T Consensus 337 SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d 416 (603)
T KOG0318|consen 337 SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD 416 (603)
T ss_pred eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence 99999999999976543110 0000 0
Q ss_pred ---------------------------CceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEE-EecccccceEEEEEc
Q 017314 215 ---------------------------SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE-VAAHSLAAVTSISLS 266 (373)
Q Consensus 215 ---------------------------~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~ 266 (373)
-...+++++|++..++.|+.||.|++|.+..+.+..+ ....+.++|++++|+
T Consensus 417 ~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS 496 (603)
T KOG0318|consen 417 GGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS 496 (603)
T ss_pred CCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEEC
Confidence 0124678999999999999999999999987664333 222334899999999
Q ss_pred CCCCEEEEeeCCCeEEEEEccccceeee-eeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCce-EEEEeccC
Q 017314 267 RSGNIILTSGRDNLHNLFDIRSLEVCGS-LRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD-IVRTLKEH 344 (373)
Q Consensus 267 ~~~~~l~s~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~-~~~~l~~h 344 (373)
||+.+|+++...+.+.+||..+.+.... +..|..++ ..++++|+..++|+||-|-.|.||+++... .+.....|
T Consensus 497 pd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI----~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH 572 (603)
T KOG0318|consen 497 PDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKI----NCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAH 572 (603)
T ss_pred CCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeE----EEEEeCCCceEEEeccccceEEEEEccChhhheEecccc
Confidence 9999999999999999999988765222 22343333 447889999999999999999999997643 35555579
Q ss_pred CccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 345 TAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 345 ~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
...|+.+.|- |...++|.|.|.+|++|+
T Consensus 573 ~~gVn~v~wl-de~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 573 LGGVNSVAWL-DESTVVSSGQDANIKVWN 600 (603)
T ss_pred ccCceeEEEe-cCceEEeccCcceeEEec
Confidence 9889999995 668999999999999995
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-39 Score=294.79 Aligned_cols=308 Identities=27% Similarity=0.444 Sum_probs=255.2
Q ss_pred HHhcccccceeeccccCccccccccccccceEEecCccCcEEEEEEcCCCC--EEEEeeCCCcEEEEeCCCCc-eeeecc
Q 017314 51 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSA--RLISGGQDKSIKLWDTNTGS-LSSTLY 127 (373)
Q Consensus 51 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~v~iwd~~~~~-~~~~~~ 127 (373)
.++++..|+.++.|+-... .|.|.|+||.|.|.++.|.|+.. .|++|+.|++|++||+++.. ++..+.
T Consensus 119 LlAtggaD~~v~VWdi~~~---------~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~ 189 (775)
T KOG0319|consen 119 LLATGGADGRVKVWDIKNG---------YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMI 189 (775)
T ss_pred eEEeccccceEEEEEeeCC---------EEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHH
Confidence 4666777888888775543 58999999999999999999876 48999999999999998654 478888
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe--------------------------eE----------------
Q 017314 128 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR--------------------------VR---------------- 165 (373)
Q Consensus 128 ~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~--------------------------~~---------------- 165 (373)
.|.+.|++++|++|+..+++++.|..+.|||+.+.+ ..
T Consensus 190 ~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es 269 (775)
T KOG0319|consen 190 LHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSES 269 (775)
T ss_pred hhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEeccc
Confidence 999999999999999999999999999999862100 00
Q ss_pred --------------------------------------------------------------------------------
Q 017314 166 -------------------------------------------------------------------------------- 165 (373)
Q Consensus 166 -------------------------------------------------------------------------------- 165 (373)
T Consensus 270 ~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr 349 (775)
T KOG0319|consen 270 GKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELR 349 (775)
T ss_pred chhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceE
Confidence
Q ss_pred ---------EEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCe----eeeEEeecC-ceeEEEEccCC-CEEE
Q 017314 166 ---------HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY----CVNTIIFHS-NCNALAFSMDG-QTIF 230 (373)
Q Consensus 166 ---------~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~----~~~~~~~~~-~~~~~~~~~~g-~~l~ 230 (373)
..+.||++.|.+++... .+.+++|||.|+++++|-++.+. ++.....|. .+.+++++..+ ..++
T Consensus 350 ~y~~~~~~c~ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffv 428 (775)
T KOG0319|consen 350 LYTLPTSYCQIIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFV 428 (775)
T ss_pred EEecCCCceEEEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEE
Confidence 23457888888888433 45689999999999999874443 333334444 47788887644 5788
Q ss_pred EEeCCCcEEEEECCCCee---eE------EEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCe
Q 017314 231 SGHIDGNLRLWDIQTGKL---LS------EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR 301 (373)
Q Consensus 231 sg~~dg~i~iwd~~~~~~---~~------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~ 301 (373)
++|.|++|++|+++..+. .. ....|. ..|++++++|+.++++|||.|.+.++|++...+..+.+.+|...
T Consensus 429 svS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHd-KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RG 507 (775)
T KOG0319|consen 429 SVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHD-KDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRG 507 (775)
T ss_pred EecCCceEEEecCCCcccccccceehhhHHHHhhc-ccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccc
Confidence 999999999999976221 11 112344 78999999999999999999999999999999999999999877
Q ss_pred eecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 302 VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 302 ~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
+.+ +.|+|..+.++|+|.|++|+||.+.++.++++|.||...|..+.|-.+|+.|+|++.||.|++|+
T Consensus 508 vw~----V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 508 VWC----VSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred eEE----EEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 654 67999999999999999999999999999999999999999999999999999999999999996
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=5.7e-41 Score=279.01 Aligned_cols=266 Identities=26% Similarity=0.499 Sum_probs=229.2
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEE
Q 017314 88 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT 167 (373)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 167 (373)
..+|+|+.+ |...++||..|.+|+|||.++..+...+.||+++|.++.| |.+.+++||.|.+|+|||+++++++.+
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~t 272 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNT 272 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhH
Confidence 467888877 5678999999999999999999999999999999999887 567999999999999999999999999
Q ss_pred eecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCee---eeEEeec-CceeEEEEccCCCEEEEEeCCCcEEEEEC
Q 017314 168 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC---VNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDI 243 (373)
Q Consensus 168 ~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~---~~~~~~~-~~~~~~~~~~~g~~l~sg~~dg~i~iwd~ 243 (373)
+-+|.+.|..+.|+ ..+++|+|.|+++++||+.+... .+.+.+| ..++.+.|+ .+++++++.|.+|++|++
T Consensus 273 lihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST 347 (499)
T ss_pred HhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence 99999999999885 46999999999999999976532 1222333 347888774 569999999999999999
Q ss_pred CCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeC
Q 017314 244 QTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA 323 (373)
Q Consensus 244 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~ 323 (373)
.+++.+..+.+|. -.|.|+.+ .++++++|+.|++|++||+..+.+...+.+|..-+. |+-.|.+.+++|+-
T Consensus 348 st~efvRtl~gHk-RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvR------ciRFd~krIVSGaY 418 (499)
T KOG0281|consen 348 STCEFVRTLNGHK-RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR------CIRFDNKRIVSGAY 418 (499)
T ss_pred cceeeehhhhccc-ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhh------heeecCceeeeccc
Confidence 9999999999997 57888776 578999999999999999999988888888776654 35568999999999
Q ss_pred CCcEEEEEccCce---------EEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 324 DGSVYIWSISKAD---------IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 324 Dg~i~iwd~~~~~---------~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
||+|+|||+..+. ++.++..|++.|..+.|. ...|++++.|.+|-||+
T Consensus 419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD 475 (499)
T ss_pred cceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence 9999999987653 344566899999999994 57899999999999996
No 29
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2e-40 Score=264.28 Aligned_cols=279 Identities=24% Similarity=0.399 Sum_probs=246.3
Q ss_pred cCccCcEEEEEEc---CCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 017314 85 NAHEGGCASILFE---YNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 161 (373)
Q Consensus 85 ~~h~~~v~~~~~~---~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 161 (373)
.+|..+|..++|| |+|-.|+|++.|+.-.+-+-++|.-+.++.||.+.|++..+..+....++++.|-+.+|||.-+
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~t 90 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVT 90 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhh
Confidence 6899999999998 6889999999999999999999999999999999999999999888899999999999999999
Q ss_pred CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCe-eeeEEeec-CceeEEEEccCCCEEEEEeCCCcEE
Q 017314 162 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-CVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLR 239 (373)
Q Consensus 162 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~-~~~~~~~~-~~~~~~~~~~~g~~l~sg~~dg~i~ 239 (373)
|..+++|. |+.-|..++|+. +.++|+||+.++-+||+|++... +...+..| ..+..+.|....+.|++++.|++||
T Consensus 91 gdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVR 168 (334)
T KOG0278|consen 91 GDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVR 168 (334)
T ss_pred hhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceE
Confidence 99998886 889999999987 68899999999999999997653 23334444 3478888888888999999999999
Q ss_pred EEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEE
Q 017314 240 LWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVA 319 (373)
Q Consensus 240 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 319 (373)
+||.+++..++.+... ..|+++-++++|++|..+ ..+.|++||..+.+.+..+..+ +.+....++|+...++
T Consensus 169 LWD~rTgt~v~sL~~~--s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P-----~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 169 LWDHRTGTEVQSLEFN--SPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMP-----CNVESASLHPKKEFFV 240 (334)
T ss_pred EEEeccCcEEEEEecC--CCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCc-----cccccccccCCCceEE
Confidence 9999999999998776 589999999999977665 5677999999998877666433 2233356889999999
Q ss_pred EEeCCCcEEEEEccCceEEEEe-ccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 320 AGSADGSVYIWSISKADIVRTL-KEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 320 sgs~Dg~i~iwd~~~~~~~~~l-~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
+|++|+.++.||..+++.+..+ ++|.+||.|+.|||+|..-|+||.||+||||+
T Consensus 241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 9999999999999999998886 89999999999999999999999999999995
No 30
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.8e-38 Score=264.43 Aligned_cols=285 Identities=19% Similarity=0.307 Sum_probs=242.5
Q ss_pred eEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 017314 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN 160 (373)
Q Consensus 81 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 160 (373)
.++|..|...|++++.+|+.++++|||.|..-.||+..++.....+.+|..+|+++.|+.||.+|++|..+|.|+||...
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeec-CceeEEEEccCCCEEEEEeCCCcEE
Q 017314 161 SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLR 239 (373)
Q Consensus 161 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~sg~~dg~i~ 239 (373)
++.....+....+.+.-+.|+| ..+.++.|+.||.+-+|.+.++...+.+..| .++++=.|.|+|+.+++|..||+|+
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~ 215 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII 215 (399)
T ss_pred cCceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence 9988888876667788888998 6889999999999999999987666666665 4588999999999999999999999
Q ss_pred EEECCCCeeeEEEecccc-----------------------------------------------------cceEEEEEc
Q 017314 240 LWDIQTGKLLSEVAAHSL-----------------------------------------------------AAVTSISLS 266 (373)
Q Consensus 240 iwd~~~~~~~~~~~~~~~-----------------------------------------------------~~v~~~~~~ 266 (373)
+||+.+++++..+..... ..|.++.++
T Consensus 216 ~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s 295 (399)
T KOG0296|consen 216 VWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS 295 (399)
T ss_pred EEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc
Confidence 999999988776651100 011122222
Q ss_pred CCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCc
Q 017314 267 RSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTA 346 (373)
Q Consensus 267 ~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~ 346 (373)
..-.+.|+|+-|++|.|||+.............. +..+.+-+ ..||++++.||.|+.||..+|.+..++.||..
T Consensus 296 s~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~-----V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~ 369 (399)
T KOG0296|consen 296 SKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG-----VTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQM 369 (399)
T ss_pred cccchhhcccccceEEEEecccchhheeccCCCc-----eEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCch
Confidence 2334667888999999999887665444433322 22344555 68999999999999999999999999999999
Q ss_pred cEEEEEEcCCCCcEEEEeCCCeEEEc
Q 017314 347 PVLSCSWSGLGKPLASADKNGVVCVW 372 (373)
Q Consensus 347 ~V~~~~~s~~g~~l~s~s~dg~i~iW 372 (373)
+|.+++.+|+++.++|+|.|++.+|+
T Consensus 370 ~Il~f~ls~~~~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 370 GILDFALSPQKRLVVTVSDDNTALVF 395 (399)
T ss_pred heeEEEEcCCCcEEEEecCCCeEEEE
Confidence 99999999999999999999999987
No 31
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.5e-39 Score=296.57 Aligned_cols=243 Identities=24% Similarity=0.399 Sum_probs=221.5
Q ss_pred eccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-------------------------------eeEEEeecCCC
Q 017314 125 TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG-------------------------------RVRHTLTGHTD 173 (373)
Q Consensus 125 ~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-------------------------------~~~~~~~~h~~ 173 (373)
++......++|..|++|+..++.|-.|..|++|.+... ....++.||++
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 34344567899999999999999999999999988631 12346889999
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC-ceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEE
Q 017314 174 KVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEV 252 (373)
Q Consensus 174 ~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~ 252 (373)
+|..+.|+| +.++|+|||.|+++|+|.+.+..++-.+..|. ++..+.|+|.|-|++||+.|++-++|.....+..+.+
T Consensus 453 PVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 453 PVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred ceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh
Confidence 999999998 67899999999999999999999988887775 4788999999999999999999999999998888888
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEc
Q 017314 253 AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI 332 (373)
Q Consensus 253 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~ 332 (373)
.+|. ..|.|+.|+|+.+|+++||.|.++++||+.++..+..|.+|..++. .++|||+|+||++|+.||.|.+||+
T Consensus 532 aghl-sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~----al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 532 AGHL-SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVT----ALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred cccc-cccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceE----EEEEcCCCceEeecccCCcEEEEEc
Confidence 8886 8999999999999999999999999999999999999988877665 4889999999999999999999999
Q ss_pred cCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 333 SKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 333 ~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
.+++++..+.+|++.|.++.||.+|..||+||.|.+|++||
T Consensus 607 ~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 607 ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred CCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 99999999999999999999999999999999999999996
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-37 Score=282.57 Aligned_cols=288 Identities=21% Similarity=0.370 Sum_probs=252.3
Q ss_pred cceEEecCccCcEEEEEEcCCCCEEEEeeCC-CcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 017314 79 TCKHKINAHEGGCASILFEYNSARLISGGQD-KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW 157 (373)
Q Consensus 79 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iw 157 (373)
.+.|.+.--..+|..++|+..|.+|+-|+.. |.+-||+..+...+....+|...+++++++|||.++++|+.|+.|+||
T Consensus 298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEE
Confidence 4567777777899999999999999998865 899999999988888889999999999999999999999999999999
Q ss_pred EcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc--eeEEEEccCCCEEEEEeCC
Q 017314 158 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHID 235 (373)
Q Consensus 158 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~g~~l~sg~~d 235 (373)
|..++-|..+|..|+..|+.+.|+. .++.++|.|-||+||.||+...++.+++..+.+ ..+++..|.|..+.+|+.|
T Consensus 378 n~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d 456 (893)
T KOG0291|consen 378 NTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQD 456 (893)
T ss_pred eccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccc
Confidence 9999999999999999999999987 688999999999999999999999999987765 5789999999999999988
Q ss_pred Cc-EEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEcccc-ceeeeeeecCCeeecCeeeeEECC
Q 017314 236 GN-LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL-EVCGSLRATGNRVASNWSRSCISP 313 (373)
Q Consensus 236 g~-i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~ 313 (373)
.- |.+|++.+|+++..+.+|. ++|.+++|+|.+..|+++|-|.+|++||+-.. ..+.++.. ......+.|+|
T Consensus 457 ~F~IfvWS~qTGqllDiLsGHE-gPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i-----~sdvl~vsfrP 530 (893)
T KOG0291|consen 457 SFEIFVWSVQTGQLLDILSGHE-GPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI-----RSDVLAVSFRP 530 (893)
T ss_pred eEEEEEEEeecCeeeehhcCCC-CcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee-----ccceeEEEEcC
Confidence 74 9999999999999999997 89999999999999999999999999997432 23333332 22334467999
Q ss_pred CCcEEEEEeCCCcEEEEEccCceEEEEec--------------------cCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 314 DESYVAAGSADGSVYIWSISKADIVRTLK--------------------EHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 314 ~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~--------------------~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
||+-||+++-||.|.+||+..+..+..+. .-..+.+++++|+||..|.+||....|+||+
T Consensus 531 dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 531 DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred CCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 99999999999999999998765543322 1235689999999999999999999999984
No 33
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-38 Score=256.28 Aligned_cols=282 Identities=24% Similarity=0.372 Sum_probs=234.1
Q ss_pred EecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 017314 83 KINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG 162 (373)
Q Consensus 83 ~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 162 (373)
.+.+|+.+++.+.|+.+|.+|+||+.|.++.+|-..+|+.+.++.||.+.|++++++.+.+.+++|+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 36789999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred eeEEEeecCCCcEEEEEEeeCCCCEEEEEe-----CCCcEEEEEcc-------CCeeeeEEeec-CceeEEEEccCCCEE
Q 017314 163 RVRHTLTGHTDKVCAVDVSKISSRHVVSAA-----YDRTLKVWDLH-------KGYCVNTIIFH-SNCNALAFSMDGQTI 229 (373)
Q Consensus 163 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s-----~D~~i~vwd~~-------~~~~~~~~~~~-~~~~~~~~~~~g~~l 229 (373)
+++.+++ -..+|..+.|++ ++++++.+. .-+.|.++|++ ...+...+..+ +.++.+-|.|-+.+|
T Consensus 85 k~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred cEEEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 9998887 457889999987 455555443 34678899997 33444444444 458899999999999
Q ss_pred EEEeCCCcEEEEECCCCeee-EEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeee
Q 017314 230 FSGHIDGNLRLWDIQTGKLL-SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSR 308 (373)
Q Consensus 230 ~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 308 (373)
++|..||.|.+||+++|+.. .....|. ..|+.++++||..++++++.|.+.++||+++.++..++.... +.+.
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~-~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~-----PvN~ 236 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHS-SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTER-----PVNT 236 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhc-cccccccccCCcceEEecccCccceeeeccceeeEEEeeecc-----cccc
Confidence 99999999999999998544 4445565 699999999999999999999999999999999888876432 3344
Q ss_pred eEECCCCcEEEEEe-CCC-c------------EEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEc
Q 017314 309 SCISPDESYVAAGS-ADG-S------------VYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372 (373)
Q Consensus 309 ~~~s~~~~~l~sgs-~Dg-~------------i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW 372 (373)
.+++|-...++.|+ .+. . .++|++-..+.+..+++|-+||++++|+|+|+-.+||+.||.||+.
T Consensus 237 aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 237 AAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred eecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 67888777766654 332 1 2333333344566778999999999999999999999999999984
No 34
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-38 Score=287.74 Aligned_cols=286 Identities=22% Similarity=0.369 Sum_probs=253.0
Q ss_pred EEecCccCcEEEEEEc-CCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 017314 82 HKINAHEGGCASILFE-YNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN 160 (373)
Q Consensus 82 ~~~~~h~~~v~~~~~~-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 160 (373)
..+-|.++.|..++|- |+.+.||.|+..+.+|+++..+..+. .+.||...|.++....+|.+|++||.|+++++|.++
T Consensus 317 k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 317 KQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred hhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEec
Confidence 3456778889999874 77899999999999999998877665 789999999999987888899999999999999985
Q ss_pred CCe----eEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeee---EE------eec-CceeEEEEccCC
Q 017314 161 SGR----VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN---TI------IFH-SNCNALAFSMDG 226 (373)
Q Consensus 161 ~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~---~~------~~~-~~~~~~~~~~~g 226 (373)
++. ++....+|++.|.+++++.....+++|+|.|+++++|++...+... .+ ..| ..+|+++++|+.
T Consensus 396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd 475 (775)
T KOG0319|consen 396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND 475 (775)
T ss_pred CCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC
Confidence 543 4556679999999999988788899999999999999997622111 11 122 459999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCe
Q 017314 227 QTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNW 306 (373)
Q Consensus 227 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 306 (373)
++++|||+|++.+||+++..+....+.+|. ..+-++.|+|..+.++|+|.|.++++|.+.++.+..++.+|...+.
T Consensus 476 kLiAT~SqDktaKiW~le~~~l~~vLsGH~-RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVl--- 551 (775)
T KOG0319|consen 476 KLIATGSQDKTAKIWDLEQLRLLGVLSGHT-RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVL--- 551 (775)
T ss_pred ceEEecccccceeeecccCceEEEEeeCCc-cceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeE---
Confidence 999999999999999999999999999997 6899999999999999999999999999999999999988865543
Q ss_pred eeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 307 SRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 307 ~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
++.|-.+|+.|+||+.||-|++|++++++++.++..|+..|++++-+|++.+++||+.||.|.+|.
T Consensus 552 -ra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 552 -RASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred -eeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 467888999999999999999999999999999999999999999999999999999999999993
No 35
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=4e-38 Score=264.71 Aligned_cols=301 Identities=24% Similarity=0.395 Sum_probs=243.9
Q ss_pred HHHHHHHHHHhhHHHHhhch-------------hhHHHHHHHHHHHHhcHHHHhcccccceeeccccCcccccccccccc
Q 017314 13 KMLVDRWMLQKMQDAERLNE-------------ANALYEDMIDRLKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPST 79 (373)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 79 (373)
||.|+++|+++-...|..-+ +-.+.+|++..++.. .+.+.++.+||.+|.|+... +
T Consensus 67 RtsL~e~l~~kgiSsE~~leIEYv~~~~aP~pl~~~~hdDWVSsv~~~-~~~IltgsYDg~~riWd~~G----------k 135 (423)
T KOG0313|consen 67 RTSLDEHLEEKGISSEEILEIEYVEAITAPKPLQCFLHDDWVSSVKGA-SKWILTGSYDGTSRIWDLKG----------K 135 (423)
T ss_pred eccHHHHHHHcCcChhheeEEEEEEecCCCCccccccchhhhhhhccc-CceEEEeecCCeeEEEecCC----------c
Confidence 56677778777776655422 224577888888765 67799999999999987543 4
Q ss_pred ceEEecCccCcEEEEEEcCCCC---EEEEeeCCCcEEEEeCCCCce----eeeccccccceEEEEEcCCCCEEEEEeCCC
Q 017314 80 CKHKINAHEGGCASILFEYNSA---RLISGGQDKSIKLWDTNTGSL----SSTLYGCLGSVLDLAITHDNRSVIAASSSN 152 (373)
Q Consensus 80 ~~~~~~~h~~~v~~~~~~~~~~---~l~s~s~D~~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~ 152 (373)
+.+++.+|.+++.++++-.... .|++||.|.++++|..+.+.. ...-.||..+|.++...++|..+++||.|.
T Consensus 136 ~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~ 215 (423)
T KOG0313|consen 136 SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDT 215 (423)
T ss_pred eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccc
Confidence 7788999999999887754333 599999999999999887643 333459999999999999999999999999
Q ss_pred cEEEEEcCC-------------------------CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCee
Q 017314 153 NLYVWDVNS-------------------------GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC 207 (373)
Q Consensus 153 ~i~iwd~~~-------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~ 207 (373)
+++||+..+ ..++.++.||+++|.++.|++ ...++|+|+|.+|+.||+.++.+
T Consensus 216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~ 293 (423)
T KOG0313|consen 216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGL 293 (423)
T ss_pred eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccc
Confidence 999999321 235678999999999999976 56899999999999999999999
Q ss_pred eeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCe---eeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEE
Q 017314 208 VNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK---LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF 284 (373)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~ 284 (373)
..++......+++.++|...+|++|+.|..||+||.+++. ..+.+.+|. ..|.++.|+|.
T Consensus 294 ~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~-nwVssvkwsp~---------------- 356 (423)
T KOG0313|consen 294 KSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHK-NWVSSVKWSPT---------------- 356 (423)
T ss_pred eeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecch-hhhhheecCCC----------------
Confidence 9999888889999999999999999999999999998763 223444444 34555544442
Q ss_pred EccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCce-EEEEeccCCccEEEEEEcCCCCcEEEE
Q 017314 285 DIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD-IVRTLKEHTAPVLSCSWSGLGKPLASA 363 (373)
Q Consensus 285 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~-~~~~l~~h~~~V~~~~~s~~g~~l~s~ 363 (373)
+...|++||.|+++++||+.+.+ ++..+.+|...|.++.|+ ++.+|+||
T Consensus 357 -----------------------------~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSG 406 (423)
T KOG0313|consen 357 -----------------------------NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSG 406 (423)
T ss_pred -----------------------------CceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEec
Confidence 23456788888888888887766 788889999999999997 57899999
Q ss_pred eCCCeEEEcC
Q 017314 364 DKNGVVCVWT 373 (373)
Q Consensus 364 s~dg~i~iW~ 373 (373)
|.|++|+|+.
T Consensus 407 GaD~~l~i~~ 416 (423)
T KOG0313|consen 407 GADNKLRIFK 416 (423)
T ss_pred cCcceEEEec
Confidence 9999999973
No 36
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.1e-39 Score=265.31 Aligned_cols=285 Identities=24% Similarity=0.438 Sum_probs=250.0
Q ss_pred CccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeee--------ccccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 017314 86 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST--------LYGCLGSVLDLAITHDNRSVIAASSSNNLYVW 157 (373)
Q Consensus 86 ~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iw 157 (373)
+...-+-|..|+|||++|++||.||.|.+||..+|+..+. +.-+..+|.++.|+.|...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 3445677899999999999999999999999999876543 33467899999999999999999999999999
Q ss_pred EcCCCeeEEEee-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc-eeEEEEccCCCEEEEEeCC
Q 017314 158 DVNSGRVRHTLT-GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHID 235 (373)
Q Consensus 158 d~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~sg~~d 235 (373)
.+.+|++++.|. +|+..|+++.|+. ++..++++|.|.++|+.-+.+|++++.+..|+. ++...|++||.++++++.|
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 999999999887 9999999999998 567899999999999999999999999998876 8999999999999999999
Q ss_pred CcEEEEECCCCeeeEEEeccc-ccceEEEEEcCCC-CEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECC
Q 017314 236 GNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP 313 (373)
Q Consensus 236 g~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 313 (373)
|+|++|+..+.+++.++.... ..+|+++-.-|.+ ..++.|...+++.+-++. ++++.++. .+.+-...+..+++||
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfs-SGkREgGdFi~~~lSp 447 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFS-SGKREGGDFINAILSP 447 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeec-cCCccCCceEEEEecC
Confidence 999999999999988886543 3467777666644 589999999999998875 34555554 2344445666788999
Q ss_pred CCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 314 DESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 314 ~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
.|.++.+.++|+.++.|.+.+|++..++.-|+..|..++-+|..+.||+-+.||.+++|.
T Consensus 448 kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 448 KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999994
No 37
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-36 Score=248.44 Aligned_cols=284 Identities=21% Similarity=0.343 Sum_probs=241.6
Q ss_pred ecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeC--CCcEEEEEcCC
Q 017314 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS--SNNLYVWDVNS 161 (373)
Q Consensus 84 ~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~--d~~i~iwd~~~ 161 (373)
++.-.+.|.++.|+.+|..|++++.|.+++|||..+++.+.++..+...+..+.|....+.++.++. |.+||.-++.+
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec
Confidence 3345678999999999999999999999999999999999999888888999999998888888887 88999999999
Q ss_pred CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEE
Q 017314 162 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLW 241 (373)
Q Consensus 162 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iw 241 (373)
.+.++.|.||.+.|..++.+|.+ +.++|+|.|++||+||++...|...+.. ..-..++|.|+|-++|++.....|++|
T Consensus 90 NkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~-~~~pi~AfDp~GLifA~~~~~~~IkLy 167 (311)
T KOG1446|consen 90 NKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNL-SGRPIAAFDPEGLIFALANGSELIKLY 167 (311)
T ss_pred CceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEec-CCCcceeECCCCcEEEEecCCCeEEEE
Confidence 99999999999999999999965 7899999999999999998777654433 234568899999999999888899999
Q ss_pred ECCCC--eeeEEEec--ccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcE
Q 017314 242 DIQTG--KLLSEVAA--HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY 317 (373)
Q Consensus 242 d~~~~--~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 317 (373)
|++.. .+...+.. ....+.+.+.|+|||++++.+...+.+.+.|.-++....++..+.+..... ...+|+||+++
T Consensus 168 D~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~-~~a~ftPds~F 246 (311)
T KOG1446|consen 168 DLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP-LSATFTPDSKF 246 (311)
T ss_pred EecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc-eeEEECCCCcE
Confidence 99864 22333322 234689999999999999999999999999999888888877665443222 23679999999
Q ss_pred EEEEeCCCcEEEEEccCceEEEEecc-CCccEEEEEEcCCCCcEEEEeCCCeEEEc
Q 017314 318 VAAGSADGSVYIWSISKADIVRTLKE-HTAPVLSCSWSGLGKPLASADKNGVVCVW 372 (373)
Q Consensus 318 l~sgs~Dg~i~iwd~~~~~~~~~l~~-h~~~V~~~~~s~~g~~l~s~s~dg~i~iW 372 (373)
+++|+.||+|.+|+++++..+..+++ +.+++.++.|+|.-.+++|++ ..+.+|
T Consensus 247 vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 247 VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFW 300 (311)
T ss_pred EEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEE
Confidence 99999999999999999999999998 789999999999766666665 556666
No 38
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-37 Score=276.35 Aligned_cols=285 Identities=19% Similarity=0.317 Sum_probs=260.3
Q ss_pred eEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 017314 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN 160 (373)
Q Consensus 81 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 160 (373)
.+++..|...|.++.|+|...+++++=..|.|.|||.++..+++++..+.-||.+..|-+-.+.+++|+.|..|+||+.+
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 34566688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCC-eeeeEEeecCc-eeEEEEcc-CCCEEEEEeCCCc
Q 017314 161 SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFHSN-CNALAFSM-DGQTIFSGHIDGN 237 (373)
Q Consensus 161 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~-~~~~~~~~~~~-~~~~~~~~-~g~~l~sg~~dg~ 237 (373)
+++.++.|.+|.+.+.+++++| ...+++|+|.|-+|++||-+.+ .|.+++..|.. +-+++|.| |.+.++|++-|++
T Consensus 86 t~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred cceeeEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 9999999999999999999999 5679999999999999999866 56778888876 78999999 7789999999999
Q ss_pred EEEEECCCCeeeEEEecccccceEEEEEcCCC--CEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCC
Q 017314 238 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG--NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE 315 (373)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 315 (373)
|++|.+....+..++.+|. ..|+++.|-+-| .+|++|+.|.++++||..+..++.++.+|.+.+. .++|+|.=
T Consensus 165 VKVWslgs~~~nfTl~gHe-kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs----~v~fhp~l 239 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEGHE-KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVS----FVFFHPEL 239 (794)
T ss_pred EEEEEcCCCCCceeeeccc-cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccce----EEEecCCC
Confidence 9999999999999999987 789999997754 6999999999999999999999999988876654 47899999
Q ss_pred cEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEE
Q 017314 316 SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV 371 (373)
Q Consensus 316 ~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~i 371 (373)
..++|||+||++|||+-.+.+...+|.-.-+.|++++-.+.++.++.|...|.|.+
T Consensus 240 piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999999999999999999988888877889999999998888999998888754
No 39
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-36 Score=275.26 Aligned_cols=285 Identities=23% Similarity=0.398 Sum_probs=257.5
Q ss_pred EecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCC-CcEEEEEcCC
Q 017314 83 KINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS-NNLYVWDVNS 161 (373)
Q Consensus 83 ~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d-~~i~iwd~~~ 161 (373)
-+..-...|++..|++....|++|=..|...+|++..-.+++.+.-...+|..++|+..|..|+.|+.. |.+-||+..+
T Consensus 260 ~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs 339 (893)
T KOG0291|consen 260 YLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS 339 (893)
T ss_pred eecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence 344444789999999999999999999999999999999999888777899999999999999887765 8999999999
Q ss_pred CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC-ceeEEEEccCCCEEEEEeCCCcEEE
Q 017314 162 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRL 240 (373)
Q Consensus 162 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sg~~dg~i~i 240 (373)
...+...++|...+.+++++| ++.+++||+.||.|||||..+|.|..++..|. .++.+.|+..|+.+++.+.||+||.
T Consensus 340 EsYVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRA 418 (893)
T KOG0291|consen 340 ESYVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRA 418 (893)
T ss_pred cceeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEe
Confidence 988999999999999999998 67899999999999999999999999998775 5899999999999999999999999
Q ss_pred EECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCC-eEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEE
Q 017314 241 WDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN-LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVA 319 (373)
Q Consensus 241 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 319 (373)
||+...+..++++........+++.+|.|.++.+|+.|. .|.+|++.+++....+.+|..++.. ++|+|+|..|+
T Consensus 419 wDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~----l~f~~~~~~La 494 (893)
T KOG0291|consen 419 WDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSG----LSFSPDGSLLA 494 (893)
T ss_pred eeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCccee----eEEccccCeEE
Confidence 999999999999988877889999999999999999887 4999999999999999998877653 78999999999
Q ss_pred EEeCCCcEEEEEccCc-eEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 320 AGSADGSVYIWSISKA-DIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 320 sgs~Dg~i~iwd~~~~-~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
|||.|.+||+||+-.. ..+.++ .+...|++++|+|||+.||.+..||.|.+|+
T Consensus 495 S~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred eccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 9999999999998654 234444 3667799999999999999999999999996
No 40
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.7e-37 Score=277.16 Aligned_cols=283 Identities=22% Similarity=0.358 Sum_probs=255.4
Q ss_pred EEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 017314 82 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 161 (373)
Q Consensus 82 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 161 (373)
..+.+|...|.+++|+.|...++||+ .+++++|+..+.+++.++.. +.+.+..|-|.+++++.|...|.+.+||+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 45779999999999999988888876 46999999999999988853 3788899999999999999999999999999
Q ss_pred CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccC-----Cee--------eeEEeecCceeEEEEccCCCE
Q 017314 162 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-----GYC--------VNTIIFHSNCNALAFSMDGQT 228 (373)
Q Consensus 162 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~-----~~~--------~~~~~~~~~~~~~~~~~~g~~ 228 (373)
...+.++++|.+.++.++..| ++..++|||.|++|++||..- |.. .+++.....+.|+++||||++
T Consensus 444 ~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 444 ASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred hhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 999999999999999999988 678899999999999999741 111 134455567899999999999
Q ss_pred EEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeee
Q 017314 229 IFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSR 308 (373)
Q Consensus 229 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 308 (373)
|+.+--|.++++|-+.+.+..-.+.+|. -+|.|+.++||+++++|||.|..+++|-+.-+.+..++-+|...+.+
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHk-LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~---- 597 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHK-LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMS---- 597 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccc-cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeE----
Confidence 9999999999999999999888899997 79999999999999999999999999999999988888888776543
Q ss_pred eEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 309 SCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 309 ~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
+.|-|...++.++|.||.|+-||-.+.+.++.+.+|...|++++.+|+|.+++|+|.|.+||+|.
T Consensus 598 V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 598 VQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 56889999999999999999999999999999999999999999999999999999999999994
No 41
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=9.5e-38 Score=260.65 Aligned_cols=243 Identities=26% Similarity=0.457 Sum_probs=224.4
Q ss_pred eeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 017314 123 SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL 202 (373)
Q Consensus 123 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~ 202 (373)
...+.+|.+.|.++++.|-+.++++|+.|++++|||+.+|++..++.||...|..+++++ ...|+++++.|+.|+.||+
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCCCeeEEEec
Confidence 456789999999999999999999999999999999999999999999999999999998 5679999999999999999
Q ss_pred cCCeeeeEEeec-CceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeE
Q 017314 203 HKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLH 281 (373)
Q Consensus 203 ~~~~~~~~~~~~-~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i 281 (373)
+..+.++.+..| +.+.+++.+|.-..|++|+.|.++|+||+++...+..+.+|. ..|.++.+.|....+++|+.|.+|
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~-~~V~~V~~~~~dpqvit~S~D~tv 301 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT-NPVASVMCQPTDPQVITGSHDSTV 301 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCC-CcceeEEeecCCCceEEecCCceE
Confidence 998888877666 458999999999999999999999999999999999999997 799999999999999999999999
Q ss_pred EEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEE
Q 017314 282 NLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLA 361 (373)
Q Consensus 282 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~ 361 (373)
++||++.++....+..|...+. .++++|....+||+|.|. |+-|++..|..++.+.+|..-|++++.+.|| +++
T Consensus 302 rlWDl~agkt~~tlt~hkksvr----al~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~ 375 (460)
T KOG0285|consen 302 RLWDLRAGKTMITLTHHKKSVR----ALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLV 375 (460)
T ss_pred EEeeeccCceeEeeecccceee----EEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEE
Confidence 9999999988888877766554 478899999999999985 9999999999999999999999999999886 889
Q ss_pred EEeCCCeEEEcC
Q 017314 362 SADKNGVVCVWT 373 (373)
Q Consensus 362 s~s~dg~i~iW~ 373 (373)
+|+.+|.|.+|+
T Consensus 376 ~G~dng~~~fwd 387 (460)
T KOG0285|consen 376 SGGDNGSIMFWD 387 (460)
T ss_pred EcCCceEEEEEe
Confidence 999999999996
No 42
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.8e-38 Score=262.45 Aligned_cols=251 Identities=24% Similarity=0.425 Sum_probs=221.8
Q ss_pred ceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 017314 121 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200 (373)
Q Consensus 121 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vw 200 (373)
.....+.+|..+|+.+-|.|+-..+++++.|.+|++||..++++...++||++.|..+.|+. .++++++||.|=++++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLW 177 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEec-CccEEEecCCccchhhe
Confidence 34566778999999999999999999999999999999999999999999999999999987 67999999999999999
Q ss_pred EccC-CeeeeEEeecC-ceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCC
Q 017314 201 DLHK-GYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 278 (373)
Q Consensus 201 d~~~-~~~~~~~~~~~-~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 278 (373)
|..+ .+|++....|. .+.+++|-|.|.+|++++.|.+|+.|++.++-++.++.+|. ..|..+....||.++++|+.|
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~-ewvr~v~v~~DGti~As~s~d 256 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHS-EWVRMVRVNQDGTIIASCSND 256 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCch-HhEEEEEecCCeeEEEecCCC
Confidence 9976 45566665554 47899999999999999999999999999999999999998 699999999999999999999
Q ss_pred CeEEEEEccccceeeeeeecCCeeec-CeeeeEECC----------CCcEEEEEeCCCcEEEEEccCceEEEEeccCCcc
Q 017314 279 NLHNLFDIRSLEVCGSLRATGNRVAS-NWSRSCISP----------DESYVAAGSADGSVYIWSISKADIVRTLKEHTAP 347 (373)
Q Consensus 279 ~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~s~----------~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~ 347 (373)
.++++|-+.+.++...++.|..++.+ .|......| .++++++||.|++|++||+.++.++-+|.+|...
T Consensus 257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnw 336 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNW 336 (406)
T ss_pred ceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccce
Confidence 99999999988766677766655543 122111111 2469999999999999999999999999999999
Q ss_pred EEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 348 VLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 348 V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
|.+++|+|.|+||+|+..|+++++|+
T Consensus 337 Vr~~af~p~Gkyi~ScaDDktlrvwd 362 (406)
T KOG0295|consen 337 VRGVAFSPGGKYILSCADDKTLRVWD 362 (406)
T ss_pred eeeeEEcCCCeEEEEEecCCcEEEEE
Confidence 99999999999999999999999996
No 43
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-35 Score=259.27 Aligned_cols=287 Identities=19% Similarity=0.345 Sum_probs=244.8
Q ss_pred eEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCc--eeeeccccccceEEEEEcCCCCEEEEEeCC----CcE
Q 017314 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS--LSSTLYGCLGSVLDLAITHDNRSVIAASSS----NNL 154 (373)
Q Consensus 81 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d----~~i 154 (373)
...+..|...++...|+|.|.+++||...|+|||||..... +..++..-.++|.+++|++|++++++.+.. +.+
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 35678899999999999999999999999999999986532 345566678899999999999999887765 345
Q ss_pred EEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc-eeEEEEccCCCEEEEEe
Q 017314 155 YVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGH 233 (373)
Q Consensus 155 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~sg~ 233 (373)
.+|| +|.....+.||...|.+++|-|..+-.++|||.|++|.+|+-..-+-..++..|++ ++++.|+|||..+++.+
T Consensus 132 F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g 209 (603)
T KOG0318|consen 132 FLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG 209 (603)
T ss_pred EEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEec
Confidence 5665 66678889999999999999998888899999999999997554444445555665 89999999999999999
Q ss_pred CCCcEEEEECCCCeeeEEEe---cccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeE
Q 017314 234 IDGNLRLWDIQTGKLLSEVA---AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC 310 (373)
Q Consensus 234 ~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (373)
.||+|.+||-.+++.+..+. .|. +.|.+++|+||+..+++++.|.++++||+.+..++.++..... +.. ...-|
T Consensus 210 sDgki~iyDGktge~vg~l~~~~aHk-GsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~-v~d-qqvG~ 286 (603)
T KOG0318|consen 210 SDGKIYIYDGKTGEKVGELEDSDAHK-GSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST-VED-QQVGC 286 (603)
T ss_pred CCccEEEEcCCCccEEEEecCCCCcc-ccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc-hhc-eEEEE
Confidence 99999999999999999887 665 8999999999999999999999999999999888888764433 111 11123
Q ss_pred ECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 311 ISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 311 ~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
+-+ +..|++-|.+|+|.+++.....+++.+.||...|+++..+|++++|.|||-||.|.-|+
T Consensus 287 lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 287 LWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred EEe-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence 334 67889999999999999999999999999999999999999999999999999999995
No 44
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6e-37 Score=281.76 Aligned_cols=249 Identities=20% Similarity=0.368 Sum_probs=211.6
Q ss_pred EEec-CccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC--------------------------------C--------
Q 017314 82 HKIN-AHEGGCASILFEYNSARLISGGQDKSIKLWDTNT--------------------------------G-------- 120 (373)
Q Consensus 82 ~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~--------------------------------~-------- 120 (373)
+.+. +|.+.|+++.||+||++||+||.|+.||||.+.. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 4455 8999999999999999999999999999998644 0
Q ss_pred --------------------ceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEE
Q 017314 121 --------------------SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 180 (373)
Q Consensus 121 --------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 180 (373)
+++..+.||.+.|.++.|+.+ ++|+++|.|+|||+|++...+++..|. |.+.|+|++|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaF 417 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAF 417 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEe
Confidence 012346799999999999965 589999999999999999999999987 9999999999
Q ss_pred eeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEeccc----
Q 017314 181 SKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS---- 256 (373)
Q Consensus 181 ~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~---- 256 (373)
+|.+.++++|||-|+.||||++...+.+.....+.-|++++|.|||++.+.|+.+|.+++|++...+.......+.
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 9999999999999999999999887777666667779999999999999999999999999999887765543321
Q ss_pred ---ccceEEEEEcCCCC-EEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEc
Q 017314 257 ---LAAVTSISLSRSGN-IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI 332 (373)
Q Consensus 257 ---~~~v~~~~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~ 332 (373)
...|+.+.|.|... .+++.+.|..|+|||.+....+..|.+..+... .....|+.||++|++|++|..|+||++
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S--Q~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS--QISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc--ceeeeEccCCCEEEEeecCceEEEEeC
Confidence 13699999997554 588888999999999988888888776544322 233568899999999999999999998
Q ss_pred cC
Q 017314 333 SK 334 (373)
Q Consensus 333 ~~ 334 (373)
..
T Consensus 576 ~~ 577 (712)
T KOG0283|consen 576 DS 577 (712)
T ss_pred CC
Confidence 44
No 45
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=3.8e-36 Score=261.85 Aligned_cols=297 Identities=21% Similarity=0.370 Sum_probs=236.1
Q ss_pred ccccccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCce----eeeccc-cccceEEEEEcCCCCEEEEE
Q 017314 74 STVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL----SSTLYG-CLGSVLDLAITHDNRSVIAA 148 (373)
Q Consensus 74 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~s~ 148 (373)
..+|..+.-++.+|...|+++++.|.|.+|+|||.|-+|++||+..-.. .+.+.. -...|.++.|++.+..|++.
T Consensus 153 ~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvv 232 (641)
T KOG0772|consen 153 KLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVV 232 (641)
T ss_pred hcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEE
Confidence 3478888899999999999999999999999999999999999864321 112221 23478899999999999999
Q ss_pred eCCCcEEEEEcCCCeeEE------------EeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeE-Eeec-
Q 017314 149 SSSNNLYVWDVNSGRVRH------------TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT-IIFH- 214 (373)
Q Consensus 149 s~d~~i~iwd~~~~~~~~------------~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~-~~~~- 214 (373)
+.....+|+|-...+... .-+||...+++.+|+|.....++|||.||++|+||+...+.... +...
T Consensus 233 sg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred ecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence 999999999976543322 33689999999999999999999999999999999976543222 2211
Q ss_pred -----CceeEEEEccCCCEEEEEeCCCcEEEEECCCCe--eeEEE-eccc-ccceEEEEEcCCCCEEEEeeCCCeEEEEE
Q 017314 215 -----SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK--LLSEV-AAHS-LAAVTSISLSRSGNIILTSGRDNLHNLFD 285 (373)
Q Consensus 215 -----~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~--~~~~~-~~~~-~~~v~~~~~~~~~~~l~s~~~d~~i~~~d 285 (373)
..+..++|+|||++|++|+.||.|.+||.+... ....+ ..|. ...|+||.|+++|++|++-|.|+++++||
T Consensus 313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence 236789999999999999999999999975432 22222 3343 23899999999999999999999999999
Q ss_pred ccccce-eeeeeecCCeeecCeeeeEECCCCcEEEEEeC------CCcEEEEEccCceEEEEeccCCccEEEEEEcCCCC
Q 017314 286 IRSLEV-CGSLRATGNRVASNWSRSCISPDESYVAAGSA------DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK 358 (373)
Q Consensus 286 ~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~------Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~ 358 (373)
++..+. +........ ...-..+||||+.++|++|+. -|++++||..+...+..+.-....|..|.|+|.=+
T Consensus 393 Lrq~kkpL~~~tgL~t--~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLN 470 (641)
T KOG0772|consen 393 LRQFKKPLNVRTGLPT--PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLN 470 (641)
T ss_pred ccccccchhhhcCCCc--cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhh
Confidence 997643 222221111 122235789999999999975 47899999999999988887888999999999988
Q ss_pred cEEEEeCCCeEEEc
Q 017314 359 PLASADKNGVVCVW 372 (373)
Q Consensus 359 ~l~s~s~dg~i~iW 372 (373)
.|..|+.||+++||
T Consensus 471 Qi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 471 QIFAGSGDGTAHVY 484 (641)
T ss_pred heeeecCCCceEEE
Confidence 88889999999986
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.7e-36 Score=278.50 Aligned_cols=250 Identities=28% Similarity=0.532 Sum_probs=221.0
Q ss_pred ceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeC-CCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 017314 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDT-NTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 158 (373)
Q Consensus 80 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd 158 (373)
..+.+.+|...|+.++|+||+.++++|+.|++|||||+ ..+..++++.+|...|++++|+|+++++++|+.|++|+|||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD 274 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence 45666899999999999999999999999999999999 55588999999999999999999999999999999999999
Q ss_pred cCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCe--eeeEEeecC---ceeEEEEccCCCEEEEEe
Q 017314 159 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY--CVNTIIFHS---NCNALAFSMDGQTIFSGH 233 (373)
Q Consensus 159 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~--~~~~~~~~~---~~~~~~~~~~g~~l~sg~ 233 (373)
++++++...+.+|.+.|++++|++ +++++++++.|+.|++||+.++. +...+..+. .+.++.|+|++.++++++
T Consensus 275 ~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 275 VRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred ccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence 999999999999999999999987 68899999999999999999998 556655443 358999999999999999
Q ss_pred CCCcEEEEECCCCeeeEEEeccccc--ceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEE
Q 017314 234 IDGNLRLWDIQTGKLLSEVAAHSLA--AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI 311 (373)
Q Consensus 234 ~dg~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (373)
.|+++++||+..+..+..+..|... .+.+..+++.+.++++++.|+.+.+||+.+...+..+..+. ........+
T Consensus 354 ~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~---~~~~~~~~~ 430 (456)
T KOG0266|consen 354 LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS---KAAVSDLSS 430 (456)
T ss_pred CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC---CCceecccc
Confidence 9999999999999999999988754 55566678899999999999999999999888777777763 122233567
Q ss_pred CCCCcEEEEEe--CCCcEEEEEcc
Q 017314 312 SPDESYVAAGS--ADGSVYIWSIS 333 (373)
Q Consensus 312 s~~~~~l~sgs--~Dg~i~iwd~~ 333 (373)
+|...++++++ .|+.|++|...
T Consensus 431 ~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 431 HPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCcCeeeecCcCCCceEEEecCC
Confidence 89999999998 78999999653
No 47
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=1.3e-35 Score=243.80 Aligned_cols=295 Identities=21% Similarity=0.355 Sum_probs=242.8
Q ss_pred cccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC------------C------ceeeeccccccceEEEEE
Q 017314 77 PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT------------G------SLSSTLYGCLGSVLDLAI 138 (373)
Q Consensus 77 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~------------~------~~~~~~~~~~~~v~~~~~ 138 (373)
+......+..|.+++.+.+|++||.++++||.|.+|+|.|++. + .++.+++.|..+|+++.|
T Consensus 101 ~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred cccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee
Confidence 3344567889999999999999999999999999999999861 1 346788999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCeeEEEe--ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEe----
Q 017314 139 THDNRSVIAASSSNNLYVWDVNSGRVRHTL--TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII---- 212 (373)
Q Consensus 139 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~---- 212 (373)
.|-...|++++.|++|+++|.......+-+ -....+|.++.|+| .+.+++.|....++++||+.+.+|.....
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~q 259 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQ 259 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccc
Confidence 999999999999999999998654322211 12457899999998 68899999999999999999988754432
Q ss_pred ecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEe-cccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccce
Q 017314 213 FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA-AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV 291 (373)
Q Consensus 213 ~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~ 291 (373)
+...++++.+++.|+..++|+.||.|++||--+++++.++. .|....|++..|..+++++++.|.|.++++|.+.++++
T Consensus 260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 22358999999999999999999999999999999998874 46667899999999999999999999999999999999
Q ss_pred eeeeeecCCeeecCee-eeEECCCCcEEEEEe-CCCcEEEEEccCceEEEEe-ccCCccEEEEEEcCCCCcEEEEeCCCe
Q 017314 292 CGSLRATGNRVASNWS-RSCISPDESYVAAGS-ADGSVYIWSISKADIVRTL-KEHTAPVLSCSWSGLGKPLASADKNGV 368 (373)
Q Consensus 292 ~~~~~~~~~~~~~~~~-~~~~s~~~~~l~sgs-~Dg~i~iwd~~~~~~~~~l-~~h~~~V~~~~~s~~g~~l~s~s~dg~ 368 (373)
+..+.+.+..-..... ...|.....|++.-. ..+.+.-||-.++..+..+ -+|++.+..+.-||.+.-+.++|.|..
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence 9888766432222111 123555566665543 3467899999888766554 379999999999999999999999999
Q ss_pred EEEc
Q 017314 369 VCVW 372 (373)
Q Consensus 369 i~iW 372 (373)
+|+|
T Consensus 420 aRFW 423 (430)
T KOG0640|consen 420 ARFW 423 (430)
T ss_pred eeee
Confidence 9999
No 48
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.6e-35 Score=236.47 Aligned_cols=277 Identities=19% Similarity=0.291 Sum_probs=243.3
Q ss_pred EEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceee--eccccccceEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 017314 82 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSS--TLYGCLGSVLDLAITHDN-RSVIAASSSNNLYVWD 158 (373)
Q Consensus 82 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd 158 (373)
+.+.+|...|.+++|+.+|..|++|+.|+++++|+++..+... ..++|.+.|-.++|.|.. ..+++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 4567899999999999999999999999999999998775433 457899999999988755 5889999999999999
Q ss_pred cCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcE
Q 017314 159 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNL 238 (373)
Q Consensus 159 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i 238 (373)
.+.+++...+......+. +.|+| ++.+++.++.|..|...|.++.+.....++...++.++|+.++..++.-...|.|
T Consensus 94 ~r~~k~~~~i~~~~eni~-i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENIN-ITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcceE-EEEcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceE
Confidence 999999888876555554 56777 6789999999999999999998888888888888999999888888877778999
Q ss_pred EEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEE
Q 017314 239 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 318 (373)
Q Consensus 239 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 318 (373)
.|......+.+..+..|. ....||.|+|+|+++|+|+.|..+.+||+...-+...+....-++ ..+.||.||+||
T Consensus 172 ~ILsypsLkpv~si~AH~-snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpV----RTlSFS~dg~~l 246 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHP-SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPV----RTLSFSHDGRML 246 (313)
T ss_pred EEEeccccccccccccCC-cceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCce----EEEEeccCccee
Confidence 999999999999999998 788899999999999999999999999999887777776655544 347899999999
Q ss_pred EEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCC
Q 017314 319 AAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN 366 (373)
Q Consensus 319 ~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~d 366 (373)
|+||+|-.|-|=++++|..+..++ +.++...|+|+|....||.+..|
T Consensus 247 ASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 247 ASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 999999999999999999988875 88899999999999999888665
No 49
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.7e-35 Score=273.53 Aligned_cols=270 Identities=27% Similarity=0.525 Sum_probs=243.1
Q ss_pred ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeee-ccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeE
Q 017314 87 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST-LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR 165 (373)
Q Consensus 87 h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 165 (373)
|...+.+..|. ..++++++.|++|++||..++..+.. +.||.+.|.++++..-+..+++|+.|.++++||..+|++.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 56677788887 66899999999999999999988888 9999999999999887889999999999999999999999
Q ss_pred EEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEee-cCceeEEEEccCCCEEEEEeCCCcEEEEECC
Q 017314 166 HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ 244 (373)
Q Consensus 166 ~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~ 244 (373)
+++.+|...|.++... ...+++||.|.+|++|++.++.+++.+.. ...|+++.++ +.++++|+.|++|++||+.
T Consensus 285 ~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EEecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 9999999999998764 45788999999999999999999999884 4568888876 8899999999999999999
Q ss_pred CCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEcccc-ceeeeeeecCCeeecCeeeeEECCCCcEEEEEeC
Q 017314 245 TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL-EVCGSLRATGNRVASNWSRSCISPDESYVAAGSA 323 (373)
Q Consensus 245 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~ 323 (373)
++++++.+.+|. ..|.++.+.+. ..+++|+.|+.|++||+++. +++..+..+...+. .+...+++|++++.
T Consensus 360 ~~~cl~sl~gH~-~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~------~l~~~~~~Lvs~~a 431 (537)
T KOG0274|consen 360 TGKCLKSLSGHT-GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVS------SLLLRDNFLVSSSA 431 (537)
T ss_pred hceeeeeecCCc-ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccc------ccccccceeEeccc
Confidence 999999999987 89999988776 89999999999999999999 88888877766552 24567899999999
Q ss_pred CCcEEEEEccCceEEEEecc-CCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 324 DGSVYIWSISKADIVRTLKE-HTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 324 Dg~i~iwd~~~~~~~~~l~~-h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
||+|++||...+++++++.+ |.+.|..+++. -..+++++.||.+++|+
T Consensus 432 D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 432 DGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred cccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99999999999999999999 77899999987 46789999999999995
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-35 Score=273.40 Aligned_cols=279 Identities=19% Similarity=0.347 Sum_probs=244.2
Q ss_pred cCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCee
Q 017314 85 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV 164 (373)
Q Consensus 85 ~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 164 (373)
..-...|.+++|+|.-.+++++=..|+|++||...+.++..|..|.++|..++|+|.+..++||+.|..|+||+..+.++
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc 85 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC 85 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee
Confidence 33456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc-eeEEEEccCCCEEEEEeCCCcEEEEEC
Q 017314 165 RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDI 243 (373)
Q Consensus 165 ~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~sg~~dg~i~iwd~ 243 (373)
+.++.||-+.|..+.|++ .-.+|+|+|.|.|||||+..++.|+..+.+|.. |-|..|+|....++|+|-|.+||+||+
T Consensus 86 lftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDi 164 (1202)
T KOG0292|consen 86 LFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDI 164 (1202)
T ss_pred hhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEee
Confidence 999999999999999988 577999999999999999999999999988876 889999999999999999999999997
Q ss_pred CCCe----------------------------ee-EEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccc--ee
Q 017314 244 QTGK----------------------------LL-SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE--VC 292 (373)
Q Consensus 244 ~~~~----------------------------~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~--~~ 292 (373)
...+ .+ ..+.+|. -.|+-++|+|.-.++++|+.|+.+++|.+...+ .+
T Consensus 165 sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD-RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEv 243 (1202)
T KOG0292|consen 165 SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD-RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 243 (1202)
T ss_pred cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc-cccceEEecCCcceEEecCCcceeeEEEeccccceee
Confidence 4211 11 2234454 578999999999999999999999999986432 23
Q ss_pred eeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeE
Q 017314 293 GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVV 369 (373)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i 369 (373)
.+.++|.+.+. .+.|+|...+++|.|+|++|+|||+.+.+.+++++.-.+.-+.++-+|..+.+|+|=..|.+
T Consensus 244 DtcrgH~nnVs----svlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 244 DTCRGHYNNVS----SVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMI 316 (1202)
T ss_pred hhhhcccCCcc----eEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceE
Confidence 44556655554 46789999999999999999999999999999998888889999999999888877555543
No 51
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.1e-37 Score=260.24 Aligned_cols=245 Identities=24% Similarity=0.380 Sum_probs=212.9
Q ss_pred EecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 017314 83 KINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG 162 (373)
Q Consensus 83 ~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 162 (373)
.+.+|..+|+++.|+++|.+++||..+|.||+|+.+..........|...|.+++|+|++..++++|.|++|+|||....
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ 212 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP 212 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC
Confidence 35689999999999999999999999999999998765443333344589999999999999999999999999999999
Q ss_pred eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc-eeEEEEccCCCEEEEEeCCCcEEEE
Q 017314 163 RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLW 241 (373)
Q Consensus 163 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~sg~~dg~i~iw 241 (373)
+....+.||.-.|.+++|+| ....+++||.|..|++||.+++.|+.++..|.. |..+.|+|++++|+++|.|..++++
T Consensus 213 kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~ 291 (464)
T KOG0284|consen 213 KEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVF 291 (464)
T ss_pred chhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEE
Confidence 88889999999999999999 467899999999999999999999999877765 7899999999999999999999999
Q ss_pred ECCCCeeeEEEecccccceEEEEEcCCC-CEEEEeeCCCeEEEEEccccceeeeee-ecCCeeecCeeeeEECCCCcEEE
Q 017314 242 DIQTGKLLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLEVCGSLR-ATGNRVASNWSRSCISPDESYVA 319 (373)
Q Consensus 242 d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~ 319 (373)
|+++.+.+..+.+|. ..++++.|+|-. .+|.+++.|+.+..|.+...+.+..+. +|... +..++++|-|..|+
T Consensus 292 DiR~mkEl~~~r~Hk-kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~----iwsl~~hPlGhil~ 366 (464)
T KOG0284|consen 292 DIRTMKELFTYRGHK-KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGE----IWSLAYHPLGHILA 366 (464)
T ss_pred ehhHhHHHHHhhcch-hhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccc----eeeeeccccceeEe
Confidence 999888888888887 789999999965 578889999999999988555544443 22222 23467899999999
Q ss_pred EEeCCCcEEEEEcc
Q 017314 320 AGSADGSVYIWSIS 333 (373)
Q Consensus 320 sgs~Dg~i~iwd~~ 333 (373)
+|+.|.++++|.-.
T Consensus 367 tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 367 TGSNDRTVRFWTRN 380 (464)
T ss_pred ecCCCcceeeeccC
Confidence 99999999999753
No 52
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=5.2e-37 Score=255.47 Aligned_cols=243 Identities=28% Similarity=0.475 Sum_probs=204.3
Q ss_pred ccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 017314 78 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW 157 (373)
Q Consensus 78 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iw 157 (373)
..|...+.||.|.|.|+.| +...|+|||.|.+|+|||+++++++.++.+|...|..+.|+ +++++++|.|.++.+|
T Consensus 227 ~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVW 302 (499)
T KOG0281|consen 227 LECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVW 302 (499)
T ss_pred HHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEE
Confidence 4588899999999999887 56799999999999999999999999999999999999986 4699999999999999
Q ss_pred EcCCCe---eEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc-eeEEEEccCCCEEEEEe
Q 017314 158 DVNSGR---VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGH 233 (373)
Q Consensus 158 d~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~sg~ 233 (373)
|+.... +.+.+.||...|..+.|+ .++++|+|.|++|++|++.++.+++++..|.. +.|+. -.|+++++|+
T Consensus 303 dm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQ--Yr~rlvVSGS 377 (499)
T KOG0281|consen 303 DMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ--YRDRLVVSGS 377 (499)
T ss_pred eccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccceeeehhhhcccccceehh--ccCeEEEecC
Confidence 987653 456788999999999874 56999999999999999999999999877754 55544 4789999999
Q ss_pred CCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceee---------eeeecCCeeec
Q 017314 234 IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG---------SLRATGNRVAS 304 (373)
Q Consensus 234 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~---------~~~~~~~~~~~ 304 (373)
+|.+||+||+..|.++..+.+|. .-|.++.|+ .+.+++|+.||.|++||+....... ++..+..++.
T Consensus 378 SDntIRlwdi~~G~cLRvLeGHE-eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVF- 453 (499)
T KOG0281|consen 378 SDNTIRLWDIECGACLRVLEGHE-ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVF- 453 (499)
T ss_pred CCceEEEEeccccHHHHHHhchH-Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeE-
Confidence 99999999999999999999997 789999996 5789999999999999987654321 1112222221
Q ss_pred CeeeeEECCCCcEEEEEeCCCcEEEEEccCceEE
Q 017314 305 NWSRSCISPDESYVAAGSADGSVYIWSISKADIV 338 (373)
Q Consensus 305 ~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~ 338 (373)
.+ ..|...+++++.|.+|.|||+.++.+-
T Consensus 454 ---rL--QFD~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 454 ---RL--QFDEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ---EE--eecceEEEeccCCCeEEEEEcCCCCcc
Confidence 12 347788999999999999999877543
No 53
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=248.98 Aligned_cols=349 Identities=21% Similarity=0.327 Sum_probs=256.4
Q ss_pred hhHhHHHHhHHHHHHHHHHhhHHHHhhc-hhhHHH-HHHHHHHHHhcHHHHhcccccceeeccccCccccccccccccce
Q 017314 4 KAKNAEAENKMLVDRWMLQKMQDAERLN-EANALY-EDMIDRLKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCK 81 (373)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 81 (373)
++.++..|++.++.+.++.+..+.+.-+ ++.... +.+.+++++..++.- |.++..-...- ....... .
T Consensus 66 ~~~Eta~ekr~RlA~e~L~~i~e~~E~~~d~~~~~~e~va~rLked~le~~------Gr~~r~~a~~v---~~~~s~~-~ 135 (479)
T KOG0299|consen 66 FEEETAGEKRLRLAEEYLDEIREIEEDNFDADDLDDELVASRLKEDVLEQS------GRVRRLVADKV---QAPESSD-F 135 (479)
T ss_pred chhcchhHHHHHHHHHHHHHHHhhhhcccccchhhHHHHHHHHHHHHHHhc------ceeehhhhhhc---ccccccc-c
Confidence 3456677888888888777775333322 122233 333445555443321 22222111110 0001111 4
Q ss_pred EEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCcee----e-------------ec-cccccceEEEEEcCCCC
Q 017314 82 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLS----S-------------TL-YGCLGSVLDLAITHDNR 143 (373)
Q Consensus 82 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~----~-------------~~-~~~~~~v~~~~~~~~~~ 143 (373)
..+..|.-+|.++++++|+.+.++++.|++|.-|++.+++.. . .- .+|...+.++++++||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 566789999999999999999999999999999999887632 1 11 27888999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC-ceeEEEE
Q 017314 144 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAF 222 (373)
Q Consensus 144 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~-~~~~~~~ 222 (373)
+|++|+.|..|.||+..+.+.++.+++|.+.|.+++|-. ..+.++++|.|++|++|++.....+.++..|. .+..+..
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA 294 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence 999999999999999999999999999999999999976 57789999999999999998776666665554 4777777
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCee
Q 017314 223 SMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRV 302 (373)
Q Consensus 223 ~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 302 (373)
..-++.+-+|+.|+++++|++..... ..+.++. +.+-|++|-.+ ..+++|+.||.|.+|++.+.+++..........
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~eesq-lifrg~~-~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIPEESQ-LIFRGGE-GSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred hcccceEEeccccceeEEEeccccce-eeeeCCC-CCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeecccccc
Confidence 77777777888999999999954332 2344443 68899999765 578999999999999999888776655332222
Q ss_pred ec--------CeeeeEECCCCcEEEEEeCCCcEEEEEccCc----eEEEEeccCCccEEEEEEcCCCCcEEEE-eCCC
Q 017314 303 AS--------NWSRSCISPDESYVAAGSADGSVYIWSISKA----DIVRTLKEHTAPVLSCSWSGLGKPLASA-DKNG 367 (373)
Q Consensus 303 ~~--------~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~----~~~~~l~~h~~~V~~~~~s~~g~~l~s~-s~dg 367 (373)
.. -++.++.-|...++|+||.+|.|++|-+..+ .++..+. -.+.|++++|+++|+.|++| +...
T Consensus 372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEh 448 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEH 448 (479)
T ss_pred CCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccc
Confidence 11 2344667788999999999999999999887 3445554 67889999999999965544 5443
No 54
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=246.94 Aligned_cols=279 Identities=21% Similarity=0.365 Sum_probs=248.6
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEe
Q 017314 89 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL 168 (373)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 168 (373)
.++.++...+..+.+++||.|.++.++|...++.+..+.||...|+++.++++...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 46777888877789999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeec-C--ceeEEEEccCCCEEEEEeCCCcEEEEECCC
Q 017314 169 TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-S--NCNALAFSMDGQTIFSGHIDGNLRLWDIQT 245 (373)
Q Consensus 169 ~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~-~--~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~ 245 (373)
..|..+|+.+..+| .+.|++++|.|+++.+.|++++.++...... + ..++.+|+|||..+.+|..||.|+|||+.+
T Consensus 300 ~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred ccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 89999999999988 6889999999999999999999887666553 2 378999999999999999999999999999
Q ss_pred CeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCC
Q 017314 246 GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG 325 (373)
Q Consensus 246 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg 325 (373)
+..+..+.+|. ++|.+++|+.+|.+|+++..|+.+++||+|..+...++...... ....++|++.|.||+.++.|=
T Consensus 379 ~~~~a~Fpght-~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~---~v~s~~fD~SGt~L~~~g~~l 454 (506)
T KOG0289|consen 379 QTNVAKFPGHT-GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK---EVNSLSFDQSGTYLGIAGSDL 454 (506)
T ss_pred ccccccCCCCC-CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc---cceeEEEcCCCCeEEeeccee
Confidence 99999999987 89999999999999999999999999999998877666544332 234578999999999998886
Q ss_pred cEEEEEcc--CceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEc
Q 017314 326 SVYIWSIS--KADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372 (373)
Q Consensus 326 ~i~iwd~~--~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW 372 (373)
+|++++-. +...+..+..|.+..+.+.|..+.++++++|.|..++++
T Consensus 455 ~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 455 QVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred EEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 66666633 567788888999999999999999999999999999886
No 55
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.5e-35 Score=240.95 Aligned_cols=244 Identities=23% Similarity=0.449 Sum_probs=213.0
Q ss_pred eeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 017314 123 SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN-SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD 201 (373)
Q Consensus 123 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd 201 (373)
...+.+|.+.|..+.|+|+|..|++|+.|..|.+|++- ..+-...+++|++.|..+.+.+ +++.++|+|.|++++.||
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEEEe
Confidence 45678999999999999999999999999999999964 3455678899999999999987 688999999999999999
Q ss_pred ccCCeeeeEEeecCc-eeEEEEccCCC-EEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCC
Q 017314 202 LHKGYCVNTIIFHSN-CNALAFSMDGQ-TIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN 279 (373)
Q Consensus 202 ~~~~~~~~~~~~~~~-~~~~~~~~~g~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 279 (373)
+++|++.+.+..|.. ++++..+.-|. ++.+|+.||++++||+++...++++... ..++++.|..++..+.+|+-|+
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k--yqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK--YQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc--eeEEEEEecccccceeeccccC
Confidence 999999999988877 56666444454 4558999999999999998888776543 5899999999999999999999
Q ss_pred eEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccC----ceEEEEeccCC----ccEEEE
Q 017314 280 LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK----ADIVRTLKEHT----APVLSC 351 (373)
Q Consensus 280 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~----~~~~~~l~~h~----~~V~~~ 351 (373)
.|++||++..+....+.+|...+.. +..+|+|.++.+-+-|.++++||+.. .++++.+.+|. .....+
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~----lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c 272 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITG----LSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC 272 (338)
T ss_pred ceeeeccccCcceEEeecccCceee----EEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhccee
Confidence 9999999999999999988877754 67899999999999999999999865 34577887754 345789
Q ss_pred EEcCCCCcEEEEeCCCeEEEcC
Q 017314 352 SWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 352 ~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
+|||++..+.+|+.|..+++|+
T Consensus 273 swsp~~~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 273 SWSPNGTKITAGSADRFVYVWD 294 (338)
T ss_pred eccCCCCccccccccceEEEee
Confidence 9999999999999999999996
No 56
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.4e-34 Score=259.75 Aligned_cols=309 Identities=23% Similarity=0.342 Sum_probs=246.3
Q ss_pred HhcccccceeeccccCccccccccccccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeecccccc
Q 017314 52 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLG 131 (373)
Q Consensus 52 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 131 (373)
+|-+=.||+++.++...+ ....++.+|...|+.+.|+..|.+|+|||.|+.|.+||+-...-...+.||..
T Consensus 80 lAVGYaDGsVqif~~~s~---------~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd 150 (888)
T KOG0306|consen 80 LAVGYADGSVQIFSLESE---------EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKD 150 (888)
T ss_pred EEEEecCceEEeeccCCC---------ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchH
Confidence 355556777877765542 23457899999999999999999999999999999999977777778888888
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEE---------------------------------------------
Q 017314 132 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH--------------------------------------------- 166 (373)
Q Consensus 132 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--------------------------------------------- 166 (373)
.|+..-|..+.+.+++.+.|+.|++||+.+..+..
T Consensus 151 ~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~ 230 (888)
T KOG0306|consen 151 SITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRY 230 (888)
T ss_pred HHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeeccccccccccc
Confidence 88887777777788888888888888874322110
Q ss_pred --------------------------------------------------------------------------------
Q 017314 167 -------------------------------------------------------------------------------- 166 (373)
Q Consensus 167 -------------------------------------------------------------------------------- 166 (373)
T Consensus 231 ~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~ 310 (888)
T KOG0306|consen 231 ISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDE 310 (888)
T ss_pred ceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHH
Confidence
Q ss_pred ---------------------------------------------------------EeecCCCcEEEEEEeeCCCCEEE
Q 017314 167 ---------------------------------------------------------TLTGHTDKVCAVDVSKISSRHVV 189 (373)
Q Consensus 167 ---------------------------------------------------------~~~~h~~~v~~~~~~~~~~~~~~ 189 (373)
++.||...|.+++++. .+.++
T Consensus 311 i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~--d~~~~ 388 (888)
T KOG0306|consen 311 IKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS--DSILL 388 (888)
T ss_pred HHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec--Cceee
Confidence 1234666666666654 23344
Q ss_pred EEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCC
Q 017314 190 SAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG 269 (373)
Q Consensus 190 s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 269 (373)
..+..+++++|+..+.+|++++... .+.+..|-|.+++++.|...|.+.+||+.+..++.++..|. +.+.+++.+||+
T Consensus 389 ~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHd-gaIWsi~~~pD~ 466 (888)
T KOG0306|consen 389 ASGAGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHD-GAIWSISLSPDN 466 (888)
T ss_pred eecCCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccc-cceeeeeecCCC
Confidence 4445678999999999999988765 56788899999999999999999999999999998888886 899999999999
Q ss_pred CEEEEeeCCCeEEEEEccccce-----eeeeeecCCe---eecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEe
Q 017314 270 NIILTSGRDNLHNLFDIRSLEV-----CGSLRATGNR---VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL 341 (373)
Q Consensus 270 ~~l~s~~~d~~i~~~d~~~~~~-----~~~~~~~~~~---~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l 341 (373)
..++++|.|.++++||..-... ...+..+... .......+.+||||+|||.+--|.+|+||-+.+-+..-.|
T Consensus 467 ~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL 546 (888)
T KOG0306|consen 467 KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL 546 (888)
T ss_pred CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee
Confidence 9999999999999999752111 0001111111 1223345678999999999999999999999999999999
Q ss_pred ccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 342 KEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 342 ~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
-||.-||.|+..|||++.++|||.|.+|+||.
T Consensus 547 YGHkLPV~smDIS~DSklivTgSADKnVKiWG 578 (888)
T KOG0306|consen 547 YGHKLPVLSMDISPDSKLIVTGSADKNVKIWG 578 (888)
T ss_pred cccccceeEEeccCCcCeEEeccCCCceEEec
Confidence 99999999999999999999999999999994
No 57
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=2e-33 Score=260.68 Aligned_cols=266 Identities=20% Similarity=0.293 Sum_probs=213.3
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCcee-------------eeccccccceEEEEEcC-CCCEEEEEeCCCc
Q 017314 88 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLS-------------STLYGCLGSVLDLAITH-DNRSVIAASSSNN 153 (373)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~ 153 (373)
-..|....+++|+..+++++.+..+..|+...+..+ ..+.+|.+.|.+++|+| ++++|++|+.|++
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 345566677788888899999988889986544221 23678999999999999 8889999999999
Q ss_pred EEEEEcCCC-------eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC-ceeEEEEccC
Q 017314 154 LYVWDVNSG-------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMD 225 (373)
Q Consensus 154 i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~ 225 (373)
|++||+.++ +++..+.+|...|.+++|+|...++++||+.|++|++||+.++.....+..|. .+.+++|+|+
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd 179 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD 179 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC
Confidence 999999764 35678899999999999998666799999999999999999998887776554 5899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEee----CCCeEEEEEccccceeee-eeecCC
Q 017314 226 GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG----RDNLHNLFDIRSLEVCGS-LRATGN 300 (373)
Q Consensus 226 g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----~d~~i~~~d~~~~~~~~~-~~~~~~ 300 (373)
|.+|++|+.|++|++||+++++.+..+..|.......+.|.+++..+++++ .|+.+++||+++...... ...+.
T Consensus 180 G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~- 258 (493)
T PTZ00421 180 GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ- 258 (493)
T ss_pred CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC-
Confidence 999999999999999999999998888888644556778889888887765 478999999987543221 11111
Q ss_pred eeecCeeeeEECCCCcEEEEEe-CCCcEEEEEccCceEEEEecc-CCccEEEEEEcCC
Q 017314 301 RVASNWSRSCISPDESYVAAGS-ADGSVYIWSISKADIVRTLKE-HTAPVLSCSWSGL 356 (373)
Q Consensus 301 ~~~~~~~~~~~s~~~~~l~sgs-~Dg~i~iwd~~~~~~~~~l~~-h~~~V~~~~~s~~ 356 (373)
........+++++.+|++|+ .||.|++||+.+++++..+.. +..++..++|.|.
T Consensus 259 --~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 259 --SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred --CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 11122345789999999887 599999999999988776544 4567788888885
No 58
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-34 Score=230.03 Aligned_cols=277 Identities=26% Similarity=0.376 Sum_probs=222.2
Q ss_pred EEEEEcCC-CCEEEEee-------CCCcEEEEeCCCCceeeecc--ccccceEEEEEcCCC-CEEEEEeCCCcEEEEEcC
Q 017314 92 ASILFEYN-SARLISGG-------QDKSIKLWDTNTGSLSSTLY--GCLGSVLDLAITHDN-RSVIAASSSNNLYVWDVN 160 (373)
Q Consensus 92 ~~~~~~~~-~~~l~s~s-------~D~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~ 160 (373)
+++.|||- .++|+.+. ..|++.|-++..++-+..+. .-...+.+++|+++. +.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 46778872 34444433 25888999886443333222 235678899999876 578899999999999965
Q ss_pred C-CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc-eeEEEEcc-CCCEEEEEeCCCc
Q 017314 161 S-GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSM-DGQTIFSGHIDGN 237 (373)
Q Consensus 161 ~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~-~g~~l~sg~~dg~ 237 (373)
. ..+++.++.|..+|.++++++.....++++|+|++||+|+...+..+.++..|.. +....|+| .++.++++|.|++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 3 4689999999999999999998888899999999999999999999999888765 67899999 6788899999999
Q ss_pred EEEEECCCCeeeEEEecccccceEEEEEcCC-CCEEEEeeCCCeEEEEEccccce-eeeeeecCCeeecCeeeeEECCC-
Q 017314 238 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLEV-CGSLRATGNRVASNWSRSCISPD- 314 (373)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~- 314 (373)
+++||++.......+..|. .++.++.|+.- .++|++++.|+.|+.||+++.+. +..+.+|+- .+.++.+||.
T Consensus 172 l~lwdvr~~gk~~~i~ah~-~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~----AVRkvk~Sph~ 246 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHN-SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGL----AVRKVKFSPHH 246 (311)
T ss_pred EEEEEecCCCceeEEEecc-ceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCce----EEEEEecCcch
Confidence 9999998755455588887 79999999984 45889999999999999998653 344444433 3345778885
Q ss_pred CcEEEEEeCCCcEEEEEccCc-eEEEEeccCCccEEEEEEcC-CCCcEEEEeCCCeEEEcC
Q 017314 315 ESYVAAGSADGSVYIWSISKA-DIVRTLKEHTAPVLSCSWSG-LGKPLASADKNGVVCVWT 373 (373)
Q Consensus 315 ~~~l~sgs~Dg~i~iwd~~~~-~~~~~l~~h~~~V~~~~~s~-~g~~l~s~s~dg~i~iW~ 373 (373)
...|||+|-|-++||||...+ ..+.+...|+.-|..+.||+ ++.++|+++.|+.+.||+
T Consensus 247 ~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 247 ASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 468999999999999999854 45667778999999999999 467999999999999996
No 59
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.4e-35 Score=234.46 Aligned_cols=251 Identities=25% Similarity=0.383 Sum_probs=223.7
Q ss_pred cceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 017314 79 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 158 (373)
Q Consensus 79 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd 158 (373)
-...+|.+|.+.|++..++.+-.+-+|++.|-+-++||.-+|..+.++. |.-.|.+++|+.|.++|++|+.++.+||||
T Consensus 50 dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfd 128 (334)
T KOG0278|consen 50 DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFD 128 (334)
T ss_pred CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhh
Confidence 3567899999999999999999999999999999999999999888774 778899999999999999999999999999
Q ss_pred cCCCe-eEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCc
Q 017314 159 VNSGR-VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGN 237 (373)
Q Consensus 159 ~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~ 237 (373)
++..+ +...+.+|+..|..+-|.. ..+.|+|.+.|++||+||.+++..++++..++.++++.++++|.+|..+ ..+.
T Consensus 129 ln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gss 206 (334)
T KOG0278|consen 129 LNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSS 206 (334)
T ss_pred ccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCce
Confidence 98653 5668899999999999887 5678999999999999999999999999999999999999999977654 4578
Q ss_pred EEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeee-eecCCeeecCeeeeEECCCCc
Q 017314 238 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL-RATGNRVASNWSRSCISPDES 316 (373)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~ 316 (373)
|.+||..+..+++.+... ..|.+.+++|+..++++|+.|..+..||..+++.+..+ .+|..++. .+.|+|||.
T Consensus 207 V~Fwdaksf~~lKs~k~P--~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVh----cVrFSPdGE 280 (334)
T KOG0278|consen 207 VKFWDAKSFGLLKSYKMP--CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVH----CVRFSPDGE 280 (334)
T ss_pred eEEeccccccceeeccCc--cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceE----EEEECCCCc
Confidence 999999999998887765 57999999999999999999999999999999888875 55555554 477999999
Q ss_pred EEEEEeCCCcEEEEEccCceEE
Q 017314 317 YVAAGSADGSVYIWSISKADIV 338 (373)
Q Consensus 317 ~l~sgs~Dg~i~iwd~~~~~~~ 338 (373)
..++||+||+|++|.+..++..
T Consensus 281 ~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 281 LYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eeeccCCCceEEEEEecCCCch
Confidence 9999999999999998776543
No 60
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.8e-35 Score=254.71 Aligned_cols=248 Identities=22% Similarity=0.372 Sum_probs=214.4
Q ss_pred ceeeeccccccceEEEEEcC-CCCEEEEEeCCCcEEEEEcCC-CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 017314 121 SLSSTLYGCLGSVLDLAITH-DNRSVIAASSSNNLYVWDVNS-GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLK 198 (373)
Q Consensus 121 ~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~ 198 (373)
+.+.++.||...|.++.|.| .+.+|++++.|+.|+||++-. +++++++.+|..+|..++|+. .+..++|+|.|++++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLK 283 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceeee
Confidence 44678899999999999999 788999999999999999876 889999999999999999987 677899999999999
Q ss_pred EEEccCCeeeeEEeecCceeEEEEccCC-CEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeC
Q 017314 199 VWDLHKGYCVNTIIFHSNCNALAFSMDG-QTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR 277 (373)
Q Consensus 199 vwd~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 277 (373)
+||+++|+++..+.....+.++.|+|++ +.+++|+.|+.|+.||+++++.++++..|- +.|..+.|-++|+.+++.+.
T Consensus 284 lwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL-g~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 284 LWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL-GAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh-hheeeeEEccCCceEeeecc
Confidence 9999999999988888889999999998 788899999999999999999998887775 89999999999999999999
Q ss_pred CCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceE---EEEeccCC--ccEEEEE
Q 017314 278 DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI---VRTLKEHT--APVLSCS 352 (373)
Q Consensus 278 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~---~~~l~~h~--~~V~~~~ 352 (373)
|+.+++|+.+....+..+.... .+.. -.+..+|.+.+++.=+.|..|.++.+..... .+.++||. +--..|.
T Consensus 363 dks~riWe~~~~v~ik~i~~~~-~hsm--P~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPE-MHTM--PCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred CccEEEEEcCCCccchhhcchh-hccC--cceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 9999999988765544332221 1111 2355789999999999999999999755322 34577885 3457889
Q ss_pred EcCCCCcEEEEeCCCeEEEcC
Q 017314 353 WSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 353 ~s~~g~~l~s~s~dg~i~iW~ 373 (373)
|||||.+|++|+.||.+.+|+
T Consensus 440 fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred EcCCCCeEEeecCCccEEEee
Confidence 999999999999999999996
No 61
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-34 Score=226.05 Aligned_cols=241 Identities=21% Similarity=0.362 Sum_probs=210.3
Q ss_pred eeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 017314 123 SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL 202 (373)
Q Consensus 123 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~ 202 (373)
...+..+.++|..+.|+-||++.++++.|++|++|++..+.+++++.+|..+|..++.+. +...+++|+.|+.+.+||+
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEc
Confidence 455677889999999999999999999999999999999999999999999999988876 5567999999999999999
Q ss_pred cCCeeeeEEeecC-ceeEEEEccCCCEEEEEeCCCcEEEEECCCC--eeeEEEecccccceEEEEEcCCCCEEEEeeCCC
Q 017314 203 HKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTG--KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN 279 (373)
Q Consensus 203 ~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 279 (373)
.+|+..+.+..|. .++.+.|+.+...+++|+.|.++|+||.++. ++++.+.... ..|.++.+. +..|++|+.|+
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~-D~V~Si~v~--~heIvaGS~DG 165 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK-DGVSSIDVA--EHEIVAGSVDG 165 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc-CceeEEEec--ccEEEeeccCC
Confidence 9999999998875 5999999999999999999999999999764 5566555443 578888775 56799999999
Q ss_pred eEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccE--EEEEEcCCC
Q 017314 280 LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPV--LSCSWSGLG 357 (373)
Q Consensus 280 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V--~~~~~s~~g 357 (373)
+++.||+|.+.....+ ...+++.++|++|++..+.++-|+++++.|-.+|++++.++||...- ..++++...
T Consensus 166 tvRtydiR~G~l~sDy------~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSSDY------FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred cEEEEEeecceeehhh------cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc
Confidence 9999999987654433 23344568899999999999999999999999999999999998644 567788888
Q ss_pred CcEEEEeCCCeEEEcC
Q 017314 358 KPLASADKNGVVCVWT 373 (373)
Q Consensus 358 ~~l~s~s~dg~i~iW~ 373 (373)
..+++||.||.+.+|+
T Consensus 240 thV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWD 255 (307)
T ss_pred eeEEeccCCceEEEEE
Confidence 8999999999999996
No 62
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.9e-33 Score=229.12 Aligned_cols=276 Identities=16% Similarity=0.268 Sum_probs=222.1
Q ss_pred CccCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCC-Cce-eeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 017314 86 AHEGGCASILFEY-NSARLISGGQDKSIKLWDTNT-GSL-SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG 162 (373)
Q Consensus 86 ~h~~~v~~~~~~~-~~~~l~s~s~D~~v~iwd~~~-~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 162 (373)
+.+..|.+++||| ....++++|.|++||+|+++. |.. .+....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4568899999999 556677999999999999986 332 3445678999999999999999999999999999999999
Q ss_pred eeEEEeecCCCcEEEEEEeeC-CCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEE
Q 017314 163 RVRHTLTGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLW 241 (373)
Q Consensus 163 ~~~~~~~~h~~~v~~~~~~~~-~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iw 241 (373)
+ ...+..|..+|.++.|-+. ....|+|||+|++||.||.+...++.++..+..+.++..- ...++.+..+..|.+|
T Consensus 105 Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 105 Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL--YPMAVVATAERHIAVY 181 (347)
T ss_pred C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--CceeEEEecCCcEEEE
Confidence 6 4567789999999988653 2347899999999999999999999888888887766543 4578888999999999
Q ss_pred ECCCCeeeE-EEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEcccc--ceeeeeeecCCe--e---ecCeeeeEECC
Q 017314 242 DIQTGKLLS-EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL--EVCGSLRATGNR--V---ASNWSRSCISP 313 (373)
Q Consensus 242 d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~--~~~~~~~~~~~~--~---~~~~~~~~~s~ 313 (373)
+++++.... .+.....-.+.+++..++....+-|+-+|.+-+..+... .....++.|... + ...++.++|+|
T Consensus 182 nL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP 261 (347)
T KOG0647|consen 182 NLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP 261 (347)
T ss_pred EcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec
Confidence 997664332 222222346889999898888899999999988887764 333344444321 1 12345678999
Q ss_pred CCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEe
Q 017314 314 DESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASAD 364 (373)
Q Consensus 314 ~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s 364 (373)
.-..|++++.||++.+||-.....+++.+.|..+|++++|+.+|.++|.+-
T Consensus 262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 262 VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 999999999999999999988888888889999999999999999988763
No 63
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-33 Score=249.61 Aligned_cols=243 Identities=21% Similarity=0.317 Sum_probs=214.2
Q ss_pred eEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 017314 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN 160 (373)
Q Consensus 81 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 160 (373)
...+..-+-+|.+..|-.--+++++|+.|..||||+.++++.+..+..|..-|.+++++|...+++++|.|-+|++||.+
T Consensus 48 VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we 127 (794)
T KOG0276|consen 48 VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE 127 (794)
T ss_pred eeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeecc
Confidence 34455566788899999889999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc-eeEEEEcc--CCCEEEEEeCCC
Q 017314 161 SG-RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSM--DGQTIFSGHIDG 236 (373)
Q Consensus 161 ~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~--~g~~l~sg~~dg 236 (373)
.+ .+.++|+||+..|.+++|.|.+.+.++|+|-|+||+||.+.+..+..++..|.. ++++.+-+ |..+|++|+.|.
T Consensus 128 ~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ 207 (794)
T KOG0276|consen 128 NEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDL 207 (794)
T ss_pred CceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCc
Confidence 75 688999999999999999999999999999999999999999999899988864 99999987 447999999999
Q ss_pred cEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCc
Q 017314 237 NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES 316 (373)
Q Consensus 237 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 316 (373)
+|++||..+..+++++.+|. ..|..+.|+|.-.++++||.|+++++|...+++...++.....++-+ ++..+.+.
T Consensus 208 tiKvWDyQtk~CV~TLeGHt-~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~----I~~~k~~~ 282 (794)
T KOG0276|consen 208 TIKVWDYQTKSCVQTLEGHT-NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWC----IAAHKGDG 282 (794)
T ss_pred eEEEeecchHHHHHHhhccc-ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEE----EeecCCCC
Confidence 99999999999999999997 78999999999999999999999999999888776666554444321 22346666
Q ss_pred EEEEEeCCCcEE
Q 017314 317 YVAAGSADGSVY 328 (373)
Q Consensus 317 ~l~sgs~Dg~i~ 328 (373)
.++.|.+.|.|.
T Consensus 283 ~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 283 KIAVGFDEGSVT 294 (794)
T ss_pred eEEEeccCCcEE
Confidence 778887777654
No 64
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=9.7e-33 Score=274.93 Aligned_cols=257 Identities=18% Similarity=0.285 Sum_probs=212.1
Q ss_pred CCcEEEEeCCCCceeee-----ccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----e----eEEEeecCCCcE
Q 017314 109 DKSIKLWDTNTGSLSST-----LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG----R----VRHTLTGHTDKV 175 (373)
Q Consensus 109 D~~v~iwd~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~----~----~~~~~~~h~~~v 175 (373)
+|.+++|+..+...... +..|.+.|.+++|+|+++++++|+.|++|+|||+... . +...+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 67788998876544332 3458899999999999999999999999999997532 1 222333 34678
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC-ceeEEEEcc-CCCEEEEEeCCCcEEEEECCCCeeeEEEe
Q 017314 176 CAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSM-DGQTIFSGHIDGNLRLWDIQTGKLLSEVA 253 (373)
Q Consensus 176 ~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~-~g~~l~sg~~dg~i~iwd~~~~~~~~~~~ 253 (373)
.+++|++..+.++++++.|++|++||+.++..+..+..|. .+.+++|+| ++.+|++|+.||+|++||++++..+..+.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 8999988777899999999999999999998888777664 489999997 78999999999999999999998888776
Q ss_pred cccccceEEEEEc-CCCCEEEEeeCCCeEEEEEccccc-eeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEE
Q 017314 254 AHSLAAVTSISLS-RSGNIILTSGRDNLHNLFDIRSLE-VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS 331 (373)
Q Consensus 254 ~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd 331 (373)
.+ ..+.++.|+ +++.+|++|+.|+.|++||++... ....+..|...+. .+.|. ++.+|++|+.|++|+|||
T Consensus 616 ~~--~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~----~v~f~-~~~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 616 TK--ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVS----YVRFV-DSSTLVSSSTDNTLKLWD 688 (793)
T ss_pred cC--CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEE----EEEEe-CCCEEEEEECCCEEEEEe
Confidence 54 578999994 579999999999999999998754 3444444544332 35564 788999999999999999
Q ss_pred ccC------ceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 332 ISK------ADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 332 ~~~------~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
+.. ..++..+.+|...+..++|+|++++||+|+.||.|++|+
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 974 356788999999999999999999999999999999995
No 65
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-33 Score=258.14 Aligned_cols=264 Identities=23% Similarity=0.391 Sum_probs=219.5
Q ss_pred cccccceeeccccCccccccccccccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccce
Q 017314 54 KQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSV 133 (373)
Q Consensus 54 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v 133 (373)
+.--.|+|+.|+-.+ ..+.+.|..|.|+|..+.|+|....++|||.|-.|++|+.++.+++.++.||..-|
T Consensus 26 tslHsG~IQlWDYRM---------~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYV 96 (1202)
T KOG0292|consen 26 TSLHSGVIQLWDYRM---------GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYV 96 (1202)
T ss_pred EeecCceeeeehhhh---------hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccccee
Confidence 333456777777655 34678899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCe-------
Q 017314 134 LDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY------- 206 (373)
Q Consensus 134 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~------- 206 (373)
..+.|++.-.+++|+|.|.||+||+..+.+++..+.||...|.|..|+| ....++|+|-|.+|||||+..-+
T Consensus 97 Rt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg 175 (1202)
T KOG0292|consen 97 RTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPG 175 (1202)
T ss_pred EEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCC
Confidence 9999999999999999999999999999999999999999999999998 46789999999999999984210
Q ss_pred --------------------e--eeEEeecC-ceeEEEEccCCCEEEEEeCCCcEEEEECCCCee--eEEEecccccceE
Q 017314 207 --------------------C--VNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL--LSEVAAHSLAAVT 261 (373)
Q Consensus 207 --------------------~--~~~~~~~~-~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~ 261 (373)
+ ...+.+|. .++-++|+|.-..|+||+.|..|++|.+...+. +.+..+|. ..|+
T Consensus 176 ~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~-nnVs 254 (1202)
T KOG0292|consen 176 SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHY-NNVS 254 (1202)
T ss_pred CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhccc-CCcc
Confidence 0 01122333 488999999999999999999999999865443 22345565 7899
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEcc
Q 017314 262 SISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS 333 (373)
Q Consensus 262 ~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~ 333 (373)
++-|+|..+++++.|.|+++++||+.....+.+++....+. ..++.+|...++|+|-+.| +.||-+.
T Consensus 255 svlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRF----W~laahP~lNLfAAgHDsG-m~VFkle 321 (1202)
T KOG0292|consen 255 SVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRF----WILAAHPELNLFAAGHDSG-MIVFKLE 321 (1202)
T ss_pred eEEecCccceeEecCCCccEEEEecccccceeeeeccCCeE----EEEEecCCcceeeeecCCc-eEEEEEc
Confidence 99999999999999999999999999888888887655443 3466788888887665544 4455544
No 66
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=3.8e-32 Score=253.43 Aligned_cols=249 Identities=18% Similarity=0.273 Sum_probs=197.8
Q ss_pred eeCCCcEEEEeCCCCceeeeccccccceEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCe--------eEEEeecCCCcEE
Q 017314 106 GGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHD-NRSVIAASSSNNLYVWDVNSGR--------VRHTLTGHTDKVC 176 (373)
Q Consensus 106 ~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~--------~~~~~~~h~~~v~ 176 (373)
||.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 778999999998877778889999999999999997 7899999999999999997642 3457889999999
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEeccc
Q 017314 177 AVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS 256 (373)
Q Consensus 177 ~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 256 (373)
+++|+|.....++|++.|++|++||++++.....+..+..+.+++|+|+|.+|++++.|+.|++||+++++.+..+..|.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 99999965556789999999999999998877776666679999999999999999999999999999999998888886
Q ss_pred ccc----eEEEEEcCCCCEEEEeeCCC----eEEEEEccc-cceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcE
Q 017314 257 LAA----VTSISLSRSGNIILTSGRDN----LHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSV 327 (373)
Q Consensus 257 ~~~----v~~~~~~~~~~~l~s~~~d~----~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i 327 (373)
... +....|++++.+|+++|.|+ .+++||++. ...+..+...... ........+++|.++++|+.|++|
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~--~~L~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNAS--APLIPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCc--cceEEeeeCCCCCEEEEEECCCeE
Confidence 321 22234568999999988774 799999995 3333333221110 111112234568999999999999
Q ss_pred EEEEccCceEEEEecc--CCccEEEEEEcCCC
Q 017314 328 YIWSISKADIVRTLKE--HTAPVLSCSWSGLG 357 (373)
Q Consensus 328 ~iwd~~~~~~~~~l~~--h~~~V~~~~~s~~g 357 (373)
++|++..+.. ..+.. +..++.+++|.|+.
T Consensus 288 r~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 288 RYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 9999987743 33332 56788999999974
No 67
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=222.62 Aligned_cols=269 Identities=23% Similarity=0.341 Sum_probs=212.8
Q ss_pred HHhcccccceeeccccCccccccccccccceEEe-cCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC--ceeeecc
Q 017314 51 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKI-NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG--SLSSTLY 127 (373)
Q Consensus 51 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~--~~~~~~~ 127 (373)
.+|+...|..+|.+.... .-...|+..+ .+|+..|.+++|+|.|++|++||.|.++.||.-..+ +++.++.
T Consensus 29 ilAscg~Dk~vriw~~~~------~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lE 102 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSS------GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLE 102 (312)
T ss_pred EEEeecCCceEEEEecCC------CCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeee
Confidence 367778888888876552 0123466555 479999999999999999999999999999986644 6788999
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCC---eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcc-
Q 017314 128 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG---RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH- 203 (373)
Q Consensus 128 ~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~- 203 (373)
||...|-+++|+++|++|++++.|+.|-||.+..+ ++...++.|+..|..+.|+| ...+|+|+|+|.+||+|.-.
T Consensus 103 GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~ 181 (312)
T KOG0645|consen 103 GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDED 181 (312)
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecC
Confidence 99999999999999999999999999999998744 57889999999999999998 46799999999999999866
Q ss_pred C--CeeeeEEeecC-ceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCe
Q 017314 204 K--GYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL 280 (373)
Q Consensus 204 ~--~~~~~~~~~~~-~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 280 (373)
. -.+.+++..|. .+-+++|+|.|..+++++.|++++||-..+ .+...+...++.+.|. ...|++++.|+.
T Consensus 182 dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~ 254 (312)
T KOG0645|consen 182 DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDA 254 (312)
T ss_pred CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----CcchhcccceEeeeec--ccceEeccCCCE
Confidence 2 25777777765 589999999999999999999999997653 2222233678889998 668999999999
Q ss_pred EEEEEccccceeeee--ee-cCCeeecCeeeeEECCC-CcEEEEEeCCCcEEEEEcc
Q 017314 281 HNLFDIRSLEVCGSL--RA-TGNRVASNWSRSCISPD-ESYVAAGSADGSVYIWSIS 333 (373)
Q Consensus 281 i~~~d~~~~~~~~~~--~~-~~~~~~~~~~~~~~s~~-~~~l~sgs~Dg~i~iwd~~ 333 (373)
|++|.-...-.-..+ .. ....+...++.+.+.|. ..+|++|++||.|++|.+.
T Consensus 255 i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 255 IRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 999975532110111 11 11112224455778884 6899999999999999864
No 68
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.8e-33 Score=225.89 Aligned_cols=242 Identities=25% Similarity=0.378 Sum_probs=215.0
Q ss_pred eeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeE--EEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 017314 124 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR--HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD 201 (373)
Q Consensus 124 ~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd 201 (373)
..+.+|.+.+.+++|+.+|..|++++.|+++++|++...+.. ....+|++.|-.++|+|..++.+++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 456688999999999999999999999999999999876543 355789999999999999999999999999999999
Q ss_pred ccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeE
Q 017314 202 LHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLH 281 (373)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i 281 (373)
+++++|........+-.-++|+|+|.+++.++.|..|.+.|.++.+........ ..+..++|+.++.+++.....|.+
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~--~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK--FEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc--ceeeeeeecCCCCEEEEecCCceE
Confidence 999999988877766667899999999999999999999999998877655443 578889999999988888888999
Q ss_pred EEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEE
Q 017314 282 NLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLA 361 (373)
Q Consensus 282 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~ 361 (373)
.|......+++.++..|..... .+.|+|+|+|||+||.|..+.+||+..--++..+..+.-||..++||-||++||
T Consensus 172 ~ILsypsLkpv~si~AH~snCi----cI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCI----CIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEeccccccccccccCCcceE----EEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceee
Confidence 9999999999999988874433 356899999999999999999999999888999999999999999999999999
Q ss_pred EEeCCCeEEE
Q 017314 362 SADKNGVVCV 371 (373)
Q Consensus 362 s~s~dg~i~i 371 (373)
+||.|..|-|
T Consensus 248 SaSEDh~IDI 257 (313)
T KOG1407|consen 248 SASEDHFIDI 257 (313)
T ss_pred ccCccceEEe
Confidence 9999988765
No 69
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.1e-32 Score=236.94 Aligned_cols=244 Identities=31% Similarity=0.558 Sum_probs=215.9
Q ss_pred eeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcc
Q 017314 124 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 203 (373)
Q Consensus 124 ~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~ 203 (373)
.++.+|.++|.+++|+|+++++++++.|+.+++|++.+++....+..|...+..+.+.+ .++.+++++.|+.|++||+.
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcC
Confidence 45678999999999999999999999999999999999888888999999998999987 45789999999999999999
Q ss_pred CCeeeeEEeecC-ceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEE
Q 017314 204 KGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHN 282 (373)
Q Consensus 204 ~~~~~~~~~~~~-~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~ 282 (373)
.+.....+..+. .+.++.|+|++.++++++.||.|++||+++++....+..|. ..+.++.|+|++.++++++.|+.++
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT-DWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCC-CcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 877776666555 68999999999999888889999999999888888887665 6899999999999999998899999
Q ss_pred EEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEE
Q 017314 283 LFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLAS 362 (373)
Q Consensus 283 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s 362 (373)
+||++..+....+..+... ...++++|++.++++++.||.|++||+..++.+..+..|..+|.+++|+|++.++++
T Consensus 161 i~d~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 236 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGE----VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236 (289)
T ss_pred EEEccccccceeEecCccc----cceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE
Confidence 9999987776666644433 234678999999999999999999999999999999899999999999999999999
Q ss_pred EeCCCeEEEcC
Q 017314 363 ADKNGVVCVWT 373 (373)
Q Consensus 363 ~s~dg~i~iW~ 373 (373)
++.||.|++|+
T Consensus 237 ~~~~~~i~i~~ 247 (289)
T cd00200 237 GSEDGTIRVWD 247 (289)
T ss_pred EcCCCcEEEEE
Confidence 99899999995
No 70
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.1e-34 Score=240.02 Aligned_cols=280 Identities=17% Similarity=0.292 Sum_probs=227.8
Q ss_pred eEEecCccCcEEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 017314 81 KHKINAHEGGCASILFEYNS-ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV 159 (373)
Q Consensus 81 ~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 159 (373)
...|.+|..+|.+++=+|.. ..++||+.||.|+|||+.+..+..++..|.+.|..+.+.. ..+++++.|++|+.|-+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 34578999999999999876 7899999999999999999999999999999999999987 67999999999999987
Q ss_pred CCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc-eeEEEEccCCC-EEEEEeCCCc
Q 017314 160 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQ-TIFSGHIDGN 237 (373)
Q Consensus 160 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~g~-~l~sg~~dg~ 237 (373)
+. .+.+++.+. ..+..++-+. ....++|||. .|.|||.....++.++..... +.++.|+|-.. .|++|++|+.
T Consensus 137 ~~-~p~~tilg~-s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 137 DG-PPLHTILGK-SVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred cC-Ccceeeecc-cccccccccc-ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 65 466666543 3455665544 3557888876 589999998888888876654 88999999654 5667779999
Q ss_pred EEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccce-eeeeeecCCeeecCeeeeEECCCCc
Q 017314 238 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV-CGSLRATGNRVASNWSRSCISPDES 316 (373)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~ 316 (373)
|.+||++.+.+++.+... ..-+.|+|+|.+-.+++++.|..+..||++.... +.....|.. ....+.|||.|+
T Consensus 212 IvLyD~R~~~Pl~KVi~~--mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvs----AV~dVdfsptG~ 285 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVILT--MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVS----AVMDVDFSPTGQ 285 (433)
T ss_pred eEEEecccCCccceeeee--ccccceecCccccceeeccccccceehhhhhhcccchhhcccce----eEEEeccCCCcc
Confidence 999999999988877654 4678899999888899999999999999997542 333333333 333477999999
Q ss_pred EEEEEeCCCcEEEEEccCceEEEEec-cCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 317 YVAAGSADGSVYIWSISKADIVRTLK-EHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 317 ~l~sgs~Dg~i~iwd~~~~~~~~~l~-~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
-|++||-|.+|+||.+..+..-..+. .--..|.+|.||.|.+|++|||.|++||+|.
T Consensus 286 EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 99999999999999988765433321 1124689999999999999999999999994
No 71
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.3e-33 Score=255.36 Aligned_cols=247 Identities=21% Similarity=0.396 Sum_probs=204.6
Q ss_pred eeecc-ccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCC--------------------------------C-------
Q 017314 123 SSTLY-GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS--------------------------------G------- 162 (373)
Q Consensus 123 ~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~--------------------------------~------- 162 (373)
.+.+. .|.+.|+++.|++||++||+|+.|+.|+||.+.. .
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34455 7999999999999999999999999999998754 0
Q ss_pred ---------------------eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEE
Q 017314 163 ---------------------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALA 221 (373)
Q Consensus 163 ---------------------~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~ 221 (373)
+++..|.||++.|..+.|+. .++|+|+|.|+|||||++....|++.|.+..-|+|++
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVa 416 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVA 416 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEE
Confidence 12346679999999999985 6799999999999999999999999999888899999
Q ss_pred Ecc-CCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCC
Q 017314 222 FSM-DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGN 300 (373)
Q Consensus 222 ~~~-~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~ 300 (373)
|+| |.+|+++|+-||.||||++...+++.-...+ .-|++++|.|+|++.+.|+.+|.+++|+....+..........
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~--~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR--DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehhhh--hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 999 8899999999999999999988877655555 5899999999999999999999999999988776554432111
Q ss_pred ----eeecCeeeeEECC-CCcEEEEEeCCCcEEEEEccCceEEEEeccCC--ccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 301 ----RVASNWSRSCISP-DESYVAAGSADGSVYIWSISKADIVRTLKEHT--APVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 301 ----~~~~~~~~~~~s~-~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~--~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
.....+..+.+.| +...+++.++|..|||+|..+..++..|+|+. ..=....|+.||++|++++.|..|+||+
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence 0011122333443 34467788999999999999989999999753 2346788999999999999999999995
No 72
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=3.9e-32 Score=252.55 Aligned_cols=248 Identities=30% Similarity=0.531 Sum_probs=214.1
Q ss_pred ceEE-ecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 017314 80 CKHK-INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 158 (373)
Q Consensus 80 ~~~~-~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd 158 (373)
.... +.+|.++|++++|..-+..|++|+.|.++|+||..+|.+..++.+|.+.|.++.. .+..+++|+.|.+|++|+
T Consensus 240 ~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~ 317 (537)
T KOG0274|consen 240 LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWD 317 (537)
T ss_pred EEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEe
Confidence 3444 8999999999999987889999999999999999999999999999999988775 455788899999999999
Q ss_pred cCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc-eeEEEEccCCCEEEEEeCCCc
Q 017314 159 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGN 237 (373)
Q Consensus 159 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~sg~~dg~ 237 (373)
++++..++++.+|+++|.++... ..++++|+.|++|++||+.+++++.++..|.. |.++.+.+. ..+++|+.|++
T Consensus 318 v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~ 393 (537)
T KOG0274|consen 318 VTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT 393 (537)
T ss_pred ccCcceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc
Confidence 99999999999999999999875 67999999999999999999999999988764 888877654 89999999999
Q ss_pred EEEEECCCC-eeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeec-CCeeecCeeeeEECCCC
Q 017314 238 LRLWDIQTG-KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRAT-GNRVASNWSRSCISPDE 315 (373)
Q Consensus 238 i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~ 315 (373)
|++||+++. +++..+..|. ..+..+. ..+++|++++.|+.|++||...++....+... ...+ .++....
T Consensus 394 IkvWdl~~~~~c~~tl~~h~-~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v------~~l~~~~ 464 (537)
T KOG0274|consen 394 IKVWDLRTKRKCIHTLQGHT-SLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGV------SALALGK 464 (537)
T ss_pred eEeecCCchhhhhhhhcCCc-ccccccc--cccceeEeccccccEEEeecccCceeeeeccCCcccE------EEeecCc
Confidence 999999999 8999888886 4554443 46789999999999999999999988887763 2222 1233335
Q ss_pred cEEEEEeCCCcEEEEEccCceEEEEec
Q 017314 316 SYVAAGSADGSVYIWSISKADIVRTLK 342 (373)
Q Consensus 316 ~~l~sgs~Dg~i~iwd~~~~~~~~~l~ 342 (373)
..+++++.||++++||+.++++...+-
T Consensus 465 ~~il~s~~~~~~~l~dl~~~~~~~~l~ 491 (537)
T KOG0274|consen 465 EEILCSSDDGSVKLWDLRSGTLIRTLL 491 (537)
T ss_pred ceEEEEecCCeeEEEecccCchhhhhh
Confidence 788899999999999999999887663
No 73
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-32 Score=235.37 Aligned_cols=274 Identities=22% Similarity=0.333 Sum_probs=228.5
Q ss_pred CcEEEEEEcCCCC-EEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEE
Q 017314 89 GGCASILFEYNSA-RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT 167 (373)
Q Consensus 89 ~~v~~~~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 167 (373)
..|++++|+|... -+|.+| .-.|.||+..+....+.+......|.++.|..||++|++|...|.|+|+|..+...++.
T Consensus 27 ~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~ 105 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ 105 (487)
T ss_pred CcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH
Confidence 6899999999543 344444 35789999988888888888888999999999999999999999999999777667788
Q ss_pred eecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc-eeEEEEccCCC-EEEEEeCCCcEEEEECCC
Q 017314 168 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQ-TIFSGHIDGNLRLWDIQT 245 (373)
Q Consensus 168 ~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~g~-~l~sg~~dg~i~iwd~~~ 245 (373)
+.+|+.+|..+.|+|.+...+++|+.|+.+++||+.+......+..|.. +.+.+++|-.. .++|||+||.||+||++.
T Consensus 106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~ 185 (487)
T KOG0310|consen 106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS 185 (487)
T ss_pred HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence 9999999999999998888999999999999999999886445666654 89999999655 778999999999999998
Q ss_pred C-eeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccc-eeeeeeecCCeeecCeeeeEECCCCcEEEEEeC
Q 017314 246 G-KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE-VCGSLRATGNRVASNWSRSCISPDESYVAAGSA 323 (373)
Q Consensus 246 ~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~ 323 (373)
. ..+.++.. ..+|.++.+-|.|..++++|. +.+++||+.++. .......|...+. ++++..+++.|+|||-
T Consensus 186 ~~~~v~elnh--g~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVT----cL~l~s~~~rLlS~sL 258 (487)
T KOG0310|consen 186 LTSRVVELNH--GCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVT----CLRLASDSTRLLSGSL 258 (487)
T ss_pred CCceeEEecC--CCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEE----EEEeecCCceEeeccc
Confidence 7 45555543 368999999999999999865 468999998544 3333333544443 4678889999999999
Q ss_pred CCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEE
Q 017314 324 DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV 371 (373)
Q Consensus 324 Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~i 371 (373)
||.|++||+.+.+.+..++ ..+||.+++.+|+++.++.|..||.+-+
T Consensus 259 D~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 259 DRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeee
Confidence 9999999999999988875 6689999999999999999999998743
No 74
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-32 Score=241.81 Aligned_cols=269 Identities=19% Similarity=0.281 Sum_probs=225.9
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeec-CC
Q 017314 94 ILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTG-HT 172 (373)
Q Consensus 94 ~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-h~ 172 (373)
+.|+. .+.|+ .+....|.+|+..++........+...|+++.|+++|.+|+.|..+|+|.|||..+.+.+..+.+ |.
T Consensus 183 ldWss-~n~la-Valg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~ 260 (484)
T KOG0305|consen 183 LDWSS-ANVLA-VALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA 260 (484)
T ss_pred hhccc-CCeEE-EEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC
Confidence 34552 33444 45567999999999986655555588999999999999999999999999999999988889988 99
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeE-Eeec-CceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeE
Q 017314 173 DKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT-IIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLS 250 (373)
Q Consensus 173 ~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~-~~~~-~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~ 250 (373)
..|-+++|. ...+.+|+.|+.|..+|++....... +..| ..+..+.|++|+.++++|+.|+.+.|||.....++.
T Consensus 261 ~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~ 337 (484)
T KOG0305|consen 261 SRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF 337 (484)
T ss_pred ceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE
Confidence 999999986 56789999999999999997765444 4444 458889999999999999999999999998888888
Q ss_pred EEecccccceEEEEEcCCC-CEEEEe--eCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEE--EeCCC
Q 017314 251 EVAAHSLAAVTSISLSRSG-NIILTS--GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAA--GSADG 325 (373)
Q Consensus 251 ~~~~~~~~~v~~~~~~~~~-~~l~s~--~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s--gs~Dg 325 (373)
.+..|. ..|.+++|+|-. .+||+| +.|+.|++||..++..+..+...... ..+.+++..+-|++ |-.+.
T Consensus 338 ~~~~H~-aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQV-----csL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 338 TFTEHT-AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQV-----CSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred EEeccc-eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCce-----eeEEEcCCCCEEEEecCCCCC
Confidence 898887 899999999954 577775 47999999999988776665433222 23567887765555 45677
Q ss_pred cEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 326 SVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 326 ~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
.|.||++.+.+.+..+.+|...|..+++||||..+++|+.|.++++|+
T Consensus 412 ~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 999999999999999999999999999999999999999999999995
No 75
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=232.81 Aligned_cols=242 Identities=23% Similarity=0.384 Sum_probs=211.1
Q ss_pred ecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCC-EEEEEeCCCcEEEEEcCCC
Q 017314 84 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWDVNSG 162 (373)
Q Consensus 84 ~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~ 162 (373)
+.-....|+++.|-.||.+|++|...|.|+|+|+++...+..+.+|..+|..+.|+|+++ .+++|+.|+.+++||+.+.
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence 344567899999999999999999999999999877677888999999999999999876 5677888899999999999
Q ss_pred eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCC-eeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEE
Q 017314 163 RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLW 241 (373)
Q Consensus 163 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iw 241 (373)
..+..+.+|++.|.|.+++|..++.++|||+||+||+||++.. ..+.++.+..++..+.+-|.|..+++++. ..|++|
T Consensus 144 ~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVW 222 (487)
T KOG0310|consen 144 YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVW 222 (487)
T ss_pred EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEE
Confidence 8877999999999999999988889999999999999999876 66677777788999999999999998874 579999
Q ss_pred ECCCC-eeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEE
Q 017314 242 DIQTG-KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAA 320 (373)
Q Consensus 242 d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 320 (373)
|+-+| +.+.....|. ..|+|+.+..++..|+++|-|+.+++||+.+++.+..+...+... .++++|+++.++.
T Consensus 223 Dl~~G~qll~~~~~H~-KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvL-----siavs~dd~t~vi 296 (487)
T KOG0310|consen 223 DLTTGGQLLTSMFNHN-KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVL-----SIAVSPDDQTVVI 296 (487)
T ss_pred EecCCceehhhhhccc-ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccccee-----eEEecCCCceEEE
Confidence 99855 4444444465 799999999999999999999999999999999988887665544 3678999999999
Q ss_pred EeCCCcEEEEEc
Q 017314 321 GSADGSVYIWSI 332 (373)
Q Consensus 321 gs~Dg~i~iwd~ 332 (373)
|-.||.+.+=+.
T Consensus 297 GmsnGlv~~rr~ 308 (487)
T KOG0310|consen 297 GMSNGLVSIRRR 308 (487)
T ss_pred ecccceeeeehh
Confidence 999998877644
No 76
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.9e-31 Score=216.81 Aligned_cols=273 Identities=20% Similarity=0.307 Sum_probs=219.6
Q ss_pred ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEE
Q 017314 87 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH 166 (373)
Q Consensus 87 h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 166 (373)
....|+++.|++.++.|+.++.||++++||+....+... ..|..++++++|.+ ...+++|+.|+.|+.+|+++++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~-~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~- 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK-FKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED- 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh-eecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-
Confidence 467899999999999999999999999999988755444 45889999999986 567899999999999999988644
Q ss_pred EeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 017314 167 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG 246 (373)
Q Consensus 167 ~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~ 246 (373)
.+..|..+|.|+...+ ..+.+++||+|++|++||.+...+..++.....+.++.. .|..|+.|+.|..|.+||+++.
T Consensus 89 ~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred eeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccc
Confidence 5667999999999987 466899999999999999997666555555555666554 5788999999999999999987
Q ss_pred eeeEEEec-ccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccce---------eeeeeecCCeeecCeeeeEECCCCc
Q 017314 247 KLLSEVAA-HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV---------CGSLRATGNRVASNWSRSCISPDES 316 (373)
Q Consensus 247 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~s~~~~ 316 (373)
........ .-...+.++++-|++.=++.++-||.+.+=.+..-+. ++.....+..+..+++.++|+|--.
T Consensus 166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence 65442222 1235789999999888889999999876544332211 1112223344555667789999999
Q ss_pred EEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeC
Q 017314 317 YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADK 365 (373)
Q Consensus 317 ~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~ 365 (373)
.||||+.||.|.+||+.+.+.+..|......|.+++|+.+|..||.++.
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9999999999999999999999999888888999999999999999874
No 77
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-32 Score=223.42 Aligned_cols=287 Identities=21% Similarity=0.387 Sum_probs=238.4
Q ss_pred cceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 017314 79 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 158 (373)
Q Consensus 79 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd 158 (373)
...+.|.||..+|+.++-...-..+.++|.|.+.+||.++++.++..+.||.+.|+++.|++.+.++++++.|++..||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 34566789999999999888778999999999999999999999999999999999999999999999999999999997
Q ss_pred ------cCC------------------------------C----eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 017314 159 ------VNS------------------------------G----RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLK 198 (373)
Q Consensus 159 ------~~~------------------------------~----~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~ 198 (373)
+.. + .++..|.+|...|.+..|.. .+..++++|+|++-.
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTAN 297 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccccce
Confidence 211 0 14557889999999988875 678999999999999
Q ss_pred EEEccCCeeeeEEeecC-ceeEEEEccCCCEEEEEeCCCcEEEEECCCC-eeeEEEecccccceEEEEEcCCCCEEEEee
Q 017314 199 VWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRSGNIILTSG 276 (373)
Q Consensus 199 vwd~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 276 (373)
+||+++|..++.+..|. +.+.++-+|..+++++++.|.+.|+||++.. ..+..+.+|. ..|++..|..+. .+++++
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt-dtVTS~vF~~dd-~vVSgS 375 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT-DTVTSVVFNTDD-RVVSGS 375 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc-cceeEEEEecCC-ceeecC
Confidence 99999999998888775 4778889999999999999999999999843 3456677886 789999998765 578999
Q ss_pred CCCeEEEEEccccc-eeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEE----EeccCCccEEEE
Q 017314 277 RDNLHNLFDIRSLE-VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVR----TLKEHTAPVLSC 351 (373)
Q Consensus 277 ~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~----~l~~h~~~V~~~ 351 (373)
.|.++++||+++.+ .+.+++. .++.++++++..+..|+.--++..|++||+....+.. .-++|..-|.|+
T Consensus 376 DDrTvKvWdLrNMRsplATIRt-----dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~ 450 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMRSPLATIRT-----DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCC 450 (481)
T ss_pred CCceEEEeeeccccCcceeeec-----CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeee
Confidence 99999999998764 2333332 2334556777777788888889999999997654322 345899999999
Q ss_pred EEcCCC--CcEEEEeCCCeEEEcC
Q 017314 352 SWSGLG--KPLASADKNGVVCVWT 373 (373)
Q Consensus 352 ~~s~~g--~~l~s~s~dg~i~iW~ 373 (373)
+|..+. ..|.++|.|..+.=|.
T Consensus 451 AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 451 AWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred eccccCcccccccccccceeeeeE
Confidence 998653 5789999999887773
No 78
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=3.2e-31 Score=250.00 Aligned_cols=281 Identities=19% Similarity=0.280 Sum_probs=231.6
Q ss_pred ccCcEEEEEEcCCCCEEEEee--CCCcEEEEeCCC------------CceeeeccccccceEEEEEcCCCCEEEEEeCCC
Q 017314 87 HEGGCASILFEYNSARLISGG--QDKSIKLWDTNT------------GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN 152 (373)
Q Consensus 87 h~~~v~~~~~~~~~~~l~s~s--~D~~v~iwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~ 152 (373)
+...|.++..+||+..++||| .|+.++||+.+. .+.+.+...|.+.|+|+.|++||.+|++||.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 345689999999999999999 999999998642 234556778999999999999999999999999
Q ss_pred cEEEEEcCC------------------CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeec
Q 017314 153 NLYVWDVNS------------------GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH 214 (373)
Q Consensus 153 ~i~iwd~~~------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~ 214 (373)
.|.||.... -++...+.+|...|..++|+| ++.+++|+|.|++|.+||..+..++..+..|
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeecc
Confidence 999999762 136778999999999999999 6889999999999999999999888888777
Q ss_pred C-ceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccc-----cceEEEEEcCCCCEEEEeeC----CCeEEEE
Q 017314 215 S-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL-----AAVTSISLSRSGNIILTSGR----DNLHNLF 284 (373)
Q Consensus 215 ~-~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~s~~~----d~~i~~~ 284 (373)
. .|..++|.|-|+|+++-+.|++|++|++.+....+.++.+.. ..+.-++|+|||.+|++... -.++.|.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 5 488999999999999999999999999888777777765432 34778999999999998643 3467777
Q ss_pred EccccceeeeeeecCCeeecCeeeeEECC------C-------C--c--EEEEEeCCCcEEEEEccCceEEEEecc-CCc
Q 017314 285 DIRSLEVCGSLRATGNRVASNWSRSCISP------D-------E--S--YVAAGSADGSVYIWSISKADIVRTLKE-HTA 346 (373)
Q Consensus 285 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~-------~--~--~l~sgs~Dg~i~iwd~~~~~~~~~l~~-h~~ 346 (373)
+-.++..-..+.+|..++.+ +.|+| . + . .+|+||.|++|.||.....+++..... ...
T Consensus 251 eR~tWk~~~~LvGH~~p~ev----vrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~ 326 (942)
T KOG0973|consen 251 ERGTWKVDKDLVGHSAPVEV----VRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK 326 (942)
T ss_pred ecCCceeeeeeecCCCceEE----EEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence 77777766677777665433 33432 1 1 1 478899999999999988888665443 456
Q ss_pred cEEEEEEcCCCCcEEEEeCCCeEEEc
Q 017314 347 PVLSCSWSGLGKPLASADKNGVVCVW 372 (373)
Q Consensus 347 ~V~~~~~s~~g~~l~s~s~dg~i~iW 372 (373)
+|.+++|||||..|..+|.||+|.+.
T Consensus 327 SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 327 SIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred ceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 89999999999999999999999764
No 79
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.2e-31 Score=217.10 Aligned_cols=264 Identities=18% Similarity=0.350 Sum_probs=218.8
Q ss_pred ceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCC--EEEEEeCCCcEEEE
Q 017314 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR--SVIAASSSNNLYVW 157 (373)
Q Consensus 80 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~iw 157 (373)
....+.+|.+++++++.+ +.++||||.|-+|+|||+.+......+-.|.+.|+++.|.++-. .|++|+.||.|.+|
T Consensus 35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 345678999999999985 78999999999999999999988889999999999999999876 89999999999999
Q ss_pred EcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCc
Q 017314 158 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGN 237 (373)
Q Consensus 158 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~ 237 (373)
++..-.++.++++|+..|+.++++| .+++.++-+.|+.+++||+-.|+.............+.|+|.|.+++.++.+ .
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~ 190 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-K 190 (362)
T ss_pred EcCCeEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-E
Confidence 9999999999999999999999998 6888999999999999999988766555555666779999999998888776 5
Q ss_pred EEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcE
Q 017314 238 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY 317 (373)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 317 (373)
|-+|.+.+..+...+... ..+.++.|. ++..|++|+.|..|++||.....+...+.+|..++...+ ..-.|++.|
T Consensus 191 i~i~q~d~A~v~~~i~~~--~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~--~~~~~~~~~ 265 (362)
T KOG0294|consen 191 IDIYQLDNASVFREIENP--KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIA--SYTNPEHEY 265 (362)
T ss_pred EEEEecccHhHhhhhhcc--ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeE--EEecCCceE
Confidence 889999887776665443 345566554 567899999999999999998888888888888876532 123578899
Q ss_pred EEEEeCCCcEEEEEccCc-----eEEEEeccCCccEEEEEE
Q 017314 318 VAAGSADGSVYIWSISKA-----DIVRTLKEHTAPVLSCSW 353 (373)
Q Consensus 318 l~sgs~Dg~i~iwd~~~~-----~~~~~l~~h~~~V~~~~~ 353 (373)
|+|+|.||.|+|||+... +++..+.- ...++|+..
T Consensus 266 lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 266 LVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred EEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 999999999999999765 34443332 344555543
No 80
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=4.5e-30 Score=238.42 Aligned_cols=212 Identities=16% Similarity=0.248 Sum_probs=179.3
Q ss_pred EecCccCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCc-------eeeeccccccceEEEEEcCCC-CEEEEEeCCCc
Q 017314 83 KINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTGS-------LSSTLYGCLGSVLDLAITHDN-RSVIAASSSNN 153 (373)
Q Consensus 83 ~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~v~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~ 153 (373)
.+.+|.+.|++++|+| ++++|++||.|++|++||+.++. .+..+.+|...|.+++|+|++ ++|++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 88999999999999999997652 456788999999999999986 68999999999
Q ss_pred EEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc--eeEEEEccCCCEEEE
Q 017314 154 LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFS 231 (373)
Q Consensus 154 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~g~~l~s 231 (373)
|+|||+.+++....+.+|.+.|.+++|++ ++.++++++.|++|++||++++..+.++..|.. ...+.|.+++..+++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence 99999999999999999999999999998 678999999999999999999988887776653 346778898888876
Q ss_pred Ee----CCCcEEEEECCCCe-eeEEEecccccceEEEEEcCCCCEEEEee-CCCeEEEEEccccceeeee
Q 017314 232 GH----IDGNLRLWDIQTGK-LLSEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEVCGSL 295 (373)
Q Consensus 232 g~----~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~~~d~~~~~~~~~~ 295 (373)
++ .|+.|++||+++.. .+.....+....+....|++++++|++++ .|+.|++||++..+.....
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 54 47899999998754 33333334334566778999999999888 4999999999987765443
No 81
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-30 Score=212.85 Aligned_cols=246 Identities=20% Similarity=0.330 Sum_probs=208.1
Q ss_pred eeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeC--CCcEEEE
Q 017314 123 SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY--DRTLKVW 200 (373)
Q Consensus 123 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~--D~~i~vw 200 (373)
.+.+..-.+.|+++.|+++|..+++++.|.+++|||..++++..++..++-.+..+.|.. ..+.++.++. |.+||+-
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEE
Confidence 344444567899999999999999999999999999999999999998888888888766 3455666665 9999999
Q ss_pred EccCCeeeeEEeecCc-eeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCC
Q 017314 201 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN 279 (373)
Q Consensus 201 d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 279 (373)
++.+.+.++.+.+|.. |++++.+|-+..+++++.|++||+||++..++.--+.. ..-..++|+|+|-++|++....
T Consensus 86 sl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~---~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 86 SLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL---SGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec---CCCcceeECCCCcEEEEecCCC
Confidence 9999999999998875 99999999999999999999999999998776655443 2345679999999999998888
Q ss_pred eEEEEEccccc--eeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccE---EEEEEc
Q 017314 280 LHNLFDIRSLE--VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPV---LSCSWS 354 (373)
Q Consensus 280 ~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V---~~~~~s 354 (373)
.|++||+|... +..++.... .....|..+.|||||++|+.++..+.+++.|--+|....++.++...= .+..|+
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~-~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITD-NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred eEEEEEecccCCCCceeEccCC-CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence 99999999763 333333221 335678889999999999999999999999999999999998775432 688999
Q ss_pred CCCCcEEEEeCCCeEEEcC
Q 017314 355 GLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 355 ~~g~~l~s~s~dg~i~iW~ 373 (373)
|||+++.+|+.||+|++|+
T Consensus 242 Pds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred CCCcEEEEecCCCcEEEEE
Confidence 9999999999999999995
No 82
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-31 Score=213.87 Aligned_cols=240 Identities=21% Similarity=0.323 Sum_probs=194.5
Q ss_pred cCcEEEEEEcCC-CCEEEEeeCCCcEEEEeCCC-CceeeeccccccceEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCee
Q 017314 88 EGGCASILFEYN-SARLISGGQDKSIKLWDTNT-GSLSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWDVNSGRV 164 (373)
Q Consensus 88 ~~~v~~~~~~~~-~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~ 164 (373)
+.++..++|+++ .+.+++++.||+++|||+.. ..++..++.|...|.++.+++-.+ .++++|.|++||+|+.+..+.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 467889999975 56899999999999999643 356788899999999999988654 578889999999999999999
Q ss_pred EEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC-ceeEEEEcc-CCCEEEEEeCCCcEEEEE
Q 017314 165 RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSM-DGQTIFSGHIDGNLRLWD 242 (373)
Q Consensus 165 ~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~-~g~~l~sg~~dg~i~iwd 242 (373)
+.++.||...|....|+|..++.++++|.|+++++||++.......++.|. ++.++.|+. +.+.+++|+.|+.||.||
T Consensus 140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wD 219 (311)
T KOG0277|consen 140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWD 219 (311)
T ss_pred eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEe
Confidence 999999999999999999999999999999999999998654333466665 788888886 677889999999999999
Q ss_pred CCCCe-eeEEEecccccceEEEEEcCCC-CEEEEeeCCCeEEEEEccccce-eeeeeecCCee-ecCeeeeEECCCCcEE
Q 017314 243 IQTGK-LLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLEV-CGSLRATGNRV-ASNWSRSCISPDESYV 318 (373)
Q Consensus 243 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~-~~~~~~~~~~~-~~~~~~~~~s~~~~~l 318 (373)
+++.+ ++.++.+|. -.|..++|+|.. .+|++++.|.++++||.....- +.+...|..-+ ...|+. .++.++
T Consensus 220 ir~~r~pl~eL~gh~-~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~----~~~~~v 294 (311)
T KOG0277|consen 220 IRNLRTPLFELNGHG-LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSL----FDPGQV 294 (311)
T ss_pred hhhccccceeecCCc-eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccccc----ccCcee
Confidence 98754 566777776 789999999975 4889999999999999874332 22222222211 112211 278899
Q ss_pred EEEeCCCcEEEEEc
Q 017314 319 AAGSADGSVYIWSI 332 (373)
Q Consensus 319 ~sgs~Dg~i~iwd~ 332 (373)
|+++.|+.++||+.
T Consensus 295 As~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 295 ASTGWDELLYVWNP 308 (311)
T ss_pred eecccccceeeecc
Confidence 99999999999984
No 83
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.5e-30 Score=213.13 Aligned_cols=289 Identities=21% Similarity=0.388 Sum_probs=235.5
Q ss_pred cccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 017314 77 PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV 156 (373)
Q Consensus 77 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~i 156 (373)
|....+++.... ..++.|++-|.+||.|+.||.|.|||+.|......+.+|.-+|.+++||+||+.|+++|.|..|++
T Consensus 14 PEel~~tld~~~--a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~l 91 (405)
T KOG1273|consen 14 PEELTHTLDNPL--AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKL 91 (405)
T ss_pred hHhhceeccCCc--cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEE
Confidence 444445554322 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC-------ceeEEEEccCCCEE
Q 017314 157 WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-------NCNALAFSMDGQTI 229 (373)
Q Consensus 157 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~g~~l 229 (373)
||+..|.+++.+. ...+|+.+.|+|...+.++.+-.+..-.+-++..+ .+...... ...+..|.+.|+++
T Consensus 92 wDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~yI 168 (405)
T KOG1273|consen 92 WDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGKYI 168 (405)
T ss_pred EeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCCCEE
Confidence 9999999888877 56889999999988888887777776666666542 22221111 12234588999999
Q ss_pred EEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEcccccee---------eeeeecCC
Q 017314 230 FSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVC---------GSLRATGN 300 (373)
Q Consensus 230 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~---------~~~~~~~~ 300 (373)
++|...|.+.++|..+.+++..+.......|..+-++..|+.|+..+.|++|+.|+++..... ++++ .-
T Consensus 169 itGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~q--Dv 246 (405)
T KOG1273|consen 169 ITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQ--DV 246 (405)
T ss_pred EEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHH--HH
Confidence 999999999999999999988877665578999999999999999999999999998732211 1111 11
Q ss_pred eeecCeeeeEECCCCcEEEEEeC-CCcEEEEEccCceEEEEeccCC-ccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 301 RVASNWSRSCISPDESYVAAGSA-DGSVYIWSISKADIVRTLKEHT-APVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 301 ~~~~~~~~~~~s~~~~~l~sgs~-Dg~i~iwd~~~~~~~~~l~~h~-~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
.....|..+|||.+|.|++.|+. .-.++||....|.+++.|.|.. .....+.|+|-...|++- ..|.++||.
T Consensus 247 VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 247 VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 12346888999999999998874 3479999999999999999988 567899999998888888 789999994
No 84
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3e-30 Score=216.40 Aligned_cols=246 Identities=16% Similarity=0.291 Sum_probs=208.0
Q ss_pred ceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 017314 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV 159 (373)
Q Consensus 80 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 159 (373)
....+.+|+..|+++.|+.||.+||||+.+|.|+||+..++.....+......+--+.|+|-+..|++|+.||.+-+|.+
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i 177 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI 177 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence 45678999999999999999999999999999999999999888777766667777899999999999999999999999
Q ss_pred CCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEee------c---------------Cce-
Q 017314 160 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF------H---------------SNC- 217 (373)
Q Consensus 160 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~------~---------------~~~- 217 (373)
.++...+.+.||..++++=.|.| +++.++++..||+|++||+.++.++..+.. + ..+
T Consensus 178 p~~~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~ 256 (399)
T KOG0296|consen 178 PSQALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV 256 (399)
T ss_pred CCcceeeEecCCCCCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc
Confidence 99888889999999999999988 588999999999999999999887665541 0 000
Q ss_pred ------------------------------eE---EEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEE
Q 017314 218 ------------------------------NA---LAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSIS 264 (373)
Q Consensus 218 ------------------------------~~---~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 264 (373)
.+ +.++..=.+.++|+.||+|-|||+...++ +.+..|. ..|+.+.
T Consensus 257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~-R~~c~he-~~V~~l~ 334 (399)
T KOG0296|consen 257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL-RHICEHE-DGVTKLK 334 (399)
T ss_pred EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh-heeccCC-CceEEEE
Confidence 01 11122224577899999999999987654 3444454 6799999
Q ss_pred EcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEcc
Q 017314 265 LSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS 333 (373)
Q Consensus 265 ~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~ 333 (373)
|.+ ..+|++++.++.++.||.|+++....+.+|...+.. .+++|+.++++|+|.|++.+||++.
T Consensus 335 w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~----f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 335 WLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILD----FALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EcC-cchheeeccCceEEeeeccccceEEEEecCchheeE----EEEcCCCcEEEEecCCCeEEEEecC
Confidence 999 789999999999999999999999999988877653 6789999999999999999999864
No 85
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.98 E-value=2e-30 Score=233.50 Aligned_cols=276 Identities=21% Similarity=0.388 Sum_probs=224.2
Q ss_pred ceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCcee--eeccccccceEE-EEEcC-CCCEEEEEeCCCcEE
Q 017314 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLS--STLYGCLGSVLD-LAITH-DNRSVIAASSSNNLY 155 (373)
Q Consensus 80 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~--~~~~~~~~~v~~-~~~~~-~~~~l~s~s~d~~i~ 155 (373)
..+.+.+|...|..+++.+ +..++++|.|+++++|+-..+..+ ..+.+|.+-+.. +++.+ ++..+++|++|.+|.
T Consensus 6 ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred eEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 3567899999998888765 558999999999999997655443 346667776655 66664 555799999999999
Q ss_pred EEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC-ceeEEEEccCCCEEEEEeC
Q 017314 156 VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHI 234 (373)
Q Consensus 156 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sg~~ 234 (373)
+|.+.+..+..++.+|...|++++... ...++|||+|.++++|-.. ++......|. .+.+++.-|++ .++|||.
T Consensus 85 v~~~~~~~P~~~LkgH~snVC~ls~~~--~~~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsa 159 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLKGHKSNVCSLSIGE--DGTLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSA 159 (745)
T ss_pred EEecCCCCchhhhhccccceeeeecCC--cCceEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccC
Confidence 999999999999999999999998654 3349999999999999653 4444455554 47888888888 7889999
Q ss_pred CCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCC
Q 017314 235 DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD 314 (373)
Q Consensus 235 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 314 (373)
|.+|++|.- ++.++++.+|. ..|..+++-+++ .+++|+.|+.|++|++ +++.+..+.+|...+.+ ....++
T Consensus 160 DKtIklWk~--~~~l~tf~gHt-D~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYs----is~~~~ 230 (745)
T KOG0301|consen 160 DKTIKLWKG--GTLLKTFSGHT-DCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYS----ISMALS 230 (745)
T ss_pred cceeeeccC--Cchhhhhccch-hheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEE----EEecCC
Confidence 999999975 67888999987 899999998775 4789999999999999 66777676666655543 234578
Q ss_pred CcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 315 ESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 315 ~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
+..++|+++|++++||+.. ++.+.+.-..-.|+++.+=++|. |++|++||.||||+
T Consensus 231 ~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 231 DGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred CCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 8999999999999999876 77888776666899999877765 67888999999984
No 86
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=5.9e-30 Score=211.24 Aligned_cols=285 Identities=20% Similarity=0.287 Sum_probs=208.6
Q ss_pred EEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCcee--eecc--ccccceEEEEEcCCCCEEE-EEeCCCcEEE
Q 017314 82 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLS--STLY--GCLGSVLDLAITHDNRSVI-AASSSNNLYV 156 (373)
Q Consensus 82 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~-s~s~d~~i~i 156 (373)
..|++|.+.|++++|+.||++|+|++.|++||||++..-... ..++ -..+..+.+.|.||-+.++ +.-...++++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 467899999999999999999999999999999998753211 1111 0123567889999987654 5556668999
Q ss_pred EEcCC---CeeE---------EEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC-ceeEEEEc
Q 017314 157 WDVNS---GRVR---------HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFS 223 (373)
Q Consensus 157 wd~~~---~~~~---------~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~ 223 (373)
|-+.. |..- ..-+.|.-.+..+-.. ....+|+|+|.|.+|.+|+++ |+.+..+.... .-...++|
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 98643 2111 1113355555555443 357899999999999999998 77777665443 34568899
Q ss_pred cCCCEEEEEeCCCcEEEEECC---CC-----eeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccce----
Q 017314 224 MDGQTIFSGHIDGNLRLWDIQ---TG-----KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV---- 291 (373)
Q Consensus 224 ~~g~~l~sg~~dg~i~iwd~~---~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~---- 291 (373)
|+|+++++++..-.|++|.+- .| ..+..+.+|. ..|..++|+|+...+++.+.||.+++||..-.-.
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~-saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ-SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch-hheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 999999999999999999863 22 2345677887 7999999999999999999999999999752111
Q ss_pred ---eeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEecc-CCccEEEEEEcCCCCcEEEEeCCC
Q 017314 292 ---CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE-HTAPVLSCSWSGLGKPLASADKNG 367 (373)
Q Consensus 292 ---~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~-h~~~V~~~~~s~~g~~l~s~s~dg 367 (373)
+.............-.++.++|.|..||... ..++.++..++++....+.. |.+.|.+++|+|+|+++||+| |.
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 1111111111111223578899999988654 44799999999988887764 999999999999999999997 45
Q ss_pred eEEE
Q 017314 368 VVCV 371 (373)
Q Consensus 368 ~i~i 371 (373)
.+++
T Consensus 395 ~vrv 398 (420)
T KOG2096|consen 395 YVRV 398 (420)
T ss_pred eeee
Confidence 5554
No 87
>PTZ00420 coronin; Provisional
Probab=99.98 E-value=3.5e-29 Score=233.61 Aligned_cols=224 Identities=15% Similarity=0.236 Sum_probs=178.7
Q ss_pred EeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCe--------eeeEEeec-Ccee
Q 017314 148 ASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY--------CVNTIIFH-SNCN 218 (373)
Q Consensus 148 ~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~--------~~~~~~~~-~~~~ 218 (373)
|+.++.+++|+......+..+.+|.+.|.+++|+|..+++++|||.|++|++||+.++. ++..+..| ..+.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 45567899999888888889999999999999998667899999999999999997642 22234444 4589
Q ss_pred EEEEccCCCEE-EEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeee
Q 017314 219 ALAFSMDGQTI-FSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA 297 (373)
Q Consensus 219 ~~~~~~~g~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~ 297 (373)
+++|+|++..+ ++|+.|++|++||+++++.+..+.. . ..|.+++|+|+|.+|++++.|+.+++||+++.+.+..+..
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~-~-~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM-P-KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI 207 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec-C-CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 99999998765 6899999999999999987776653 2 6799999999999999999999999999999988888877
Q ss_pred cCCeeec-CeeeeEECCCCcEEEEEeCCC----cEEEEEccC-ceEEEEec--cCCccEEEEEEcCCCCcEEEEeCCCeE
Q 017314 298 TGNRVAS-NWSRSCISPDESYVAAGSADG----SVYIWSISK-ADIVRTLK--EHTAPVLSCSWSGLGKPLASADKNGVV 369 (373)
Q Consensus 298 ~~~~~~~-~~~~~~~s~~~~~l~sgs~Dg----~i~iwd~~~-~~~~~~l~--~h~~~V~~~~~s~~g~~l~s~s~dg~i 369 (373)
|...... .+....+++++.+|++++.|+ .|+|||+.+ +.++..+. .+.+.+......++|.++++|+.|++|
T Consensus 208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence 6553321 122234678999999988774 799999985 55665543 344555555556678999999999999
Q ss_pred EEcC
Q 017314 370 CVWT 373 (373)
Q Consensus 370 ~iW~ 373 (373)
++|+
T Consensus 288 r~~e 291 (568)
T PTZ00420 288 RYYQ 291 (568)
T ss_pred EEEE
Confidence 9994
No 88
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=5.4e-30 Score=211.15 Aligned_cols=239 Identities=18% Similarity=0.285 Sum_probs=201.4
Q ss_pred eeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCC-CCEEEEEeCCCcEEEEE
Q 017314 123 SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKIS-SRHVVSAAYDRTLKVWD 201 (373)
Q Consensus 123 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~s~s~D~~i~vwd 201 (373)
...+..|.++++++|+ ++.++++||.|.+|+|||+.+......+..|.+.|+++.|.++. ..+|++|+.||.|.+|+
T Consensus 36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 3456789999999998 47899999999999999999999999999999999999998643 34899999999999999
Q ss_pred ccCCeeeeEEeecC-ceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCe
Q 017314 202 LHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL 280 (373)
Q Consensus 202 ~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 280 (373)
...-.++.++..|. .|+.++++|.|++.++.+.|+.+|+||+.+|+.-....... .-+.+.|+|.|.+++..+.++
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd~F~v~~~~~- 190 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN--KATLVSWSPQGDHFVVSGRNK- 190 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC--cceeeEEcCCCCEEEEEeccE-
Confidence 99988999988775 49999999999999999999999999999988766655443 334599999999998888765
Q ss_pred EEEEEccccceeeeeeecCCeeecCeeeeEE-CCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEE--cCCC
Q 017314 281 HNLFDIRSLEVCGSLRATGNRVASNWSRSCI-SPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSW--SGLG 357 (373)
Q Consensus 281 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~--s~~g 357 (373)
|-+|.+........+...... .|. --++.+|++|.+|+.|++||-.+..+...+.+|+..|.++.+ .|++
T Consensus 191 i~i~q~d~A~v~~~i~~~~r~-------l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~ 263 (362)
T KOG0294|consen 191 IDIYQLDNASVFREIENPKRI-------LCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH 263 (362)
T ss_pred EEEEecccHhHhhhhhccccc-------eeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc
Confidence 668887766554444332111 222 247889999999999999999999999999999999999984 5678
Q ss_pred CcEEEEeCCCeEEEcC
Q 017314 358 KPLASADKNGVVCVWT 373 (373)
Q Consensus 358 ~~l~s~s~dg~i~iW~ 373 (373)
.+|+|+|.||.|+||+
T Consensus 264 ~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 264 EYLVTASSDGFIKVWD 279 (362)
T ss_pred eEEEEeccCceEEEEE
Confidence 9999999999999996
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.9e-31 Score=237.28 Aligned_cols=275 Identities=23% Similarity=0.370 Sum_probs=225.2
Q ss_pred EEEEc-CCCCEEEEeeCCCcEEEEeCCCCc------eeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--e
Q 017314 93 SILFE-YNSARLISGGQDKSIKLWDTNTGS------LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG--R 163 (373)
Q Consensus 93 ~~~~~-~~~~~l~s~s~D~~v~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~--~ 163 (373)
++..+ |.+++|+|||.||.|++|++.... ....+..|...|.+++...+++.|+++|.|-+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 45555 455679999999999999986432 35677889999999999999999999999999999999877 5
Q ss_pred eEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCee--eeEE--------e--ecCceeEEEEccCCCEEEE
Q 017314 164 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC--VNTI--------I--FHSNCNALAFSMDGQTIFS 231 (373)
Q Consensus 164 ~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~--~~~~--------~--~~~~~~~~~~~~~g~~l~s 231 (373)
+..++..|++.|.|+++.......++|||-|+.|.+||+.++.. +.++ . ....+.+++.++.|..+++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 78899999999999998544677899999999999999998732 2111 1 1134788999999999999
Q ss_pred EeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEE
Q 017314 232 GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI 311 (373)
Q Consensus 232 g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (373)
|+..+.|++||.++.+.+..+.+|. ..|..+-.++||+.++++|.|++|++||++.-+++.++..|...+- ....
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHT-dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VW----aL~~ 263 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHT-DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVW----ALQS 263 (735)
T ss_pred cCcccceEEeccccccceeeeeccc-cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceE----EEee
Confidence 9999999999999999999999887 7899999999999999999999999999999999999888876642 2445
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEc
Q 017314 312 SPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372 (373)
Q Consensus 312 s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW 372 (373)
+|+=.++.+|+.||.|+.=|+.+......+-....||..+..+.+.+-+-.++.|+.|+-|
T Consensus 264 ~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW 324 (735)
T KOG0308|consen 264 SPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRW 324 (735)
T ss_pred CCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceec
Confidence 7888999999999999999998854333333344566667666554545666677777777
No 90
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=6.9e-31 Score=223.41 Aligned_cols=251 Identities=20% Similarity=0.312 Sum_probs=210.7
Q ss_pred ccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccc-cccceEEEEEcCCCCEEEEEeCCCcEEE
Q 017314 78 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG-CLGSVLDLAITHDNRSVIAASSSNNLYV 156 (373)
Q Consensus 78 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~i~i 156 (373)
.+..+++.+|..+|.-+.||||.++|++|+.|..+++||+.+|.+...+.. +..++.+++|.|||..+++|+.|++|..
T Consensus 259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~ 338 (519)
T KOG0293|consen 259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIM 338 (519)
T ss_pred eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEE
Confidence 345789999999999999999999999999999999999999988766543 3578999999999999999999999999
Q ss_pred EEcCCCeeEEEeecC-CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCC
Q 017314 157 WDVNSGRVRHTLTGH-TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHID 235 (373)
Q Consensus 157 wd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~d 235 (373)
||++... ....++- ...|.++++.+ +++++++...|..|++++.+...+...+..+..+.++++|.||+++++.-.+
T Consensus 339 wdlDgn~-~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~ 416 (519)
T KOG0293|consen 339 WDLDGNI-LGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQD 416 (519)
T ss_pred ecCCcch-hhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEccc
Confidence 9987543 3333333 24588898877 6788888889999999999877666666778889999999999999999999
Q ss_pred CcEEEEECCCCeeeEEEeccccc--ceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECC
Q 017314 236 GNLRLWDIQTGKLLSEVAAHSLA--AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP 313 (373)
Q Consensus 236 g~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 313 (373)
..|++||+...+.+..+.+|..+ .|.++-=-.+..++++|+.|+.|++|+..++..+..+.+|...+.+ ++.+|
T Consensus 417 qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNc----VswNP 492 (519)
T KOG0293|consen 417 QEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNC----VSWNP 492 (519)
T ss_pred CeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeE----EecCC
Confidence 99999999988888888887633 3444443445689999999999999999999999999998866543 56667
Q ss_pred -CCcEEEEEeCCCcEEEEEccC
Q 017314 314 -DESYVAAGSADGSVYIWSISK 334 (373)
Q Consensus 314 -~~~~l~sgs~Dg~i~iwd~~~ 334 (373)
+..++||||+||+||||....
T Consensus 493 ~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 493 ADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCHHHhhccCCCCeEEEecCCc
Confidence 567899999999999998754
No 91
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=1.3e-28 Score=194.39 Aligned_cols=283 Identities=16% Similarity=0.262 Sum_probs=228.2
Q ss_pred ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC------C----c-----eeeeccccccceEEEEEcCCCCEEEEEeCC
Q 017314 87 HEGGCASILFEYNSARLISGGQDKSIKLWDTNT------G----S-----LSSTLYGCLGSVLDLAITHDNRSVIAASSS 151 (373)
Q Consensus 87 h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~------~----~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d 151 (373)
....|.+++|+|.|.+.+.||...+.||-.... + + ..+.-+.|.+.|.+.+|+|+|.++++|++|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 456899999999999999999999999875421 1 0 112335688999999999999999999999
Q ss_pred CcEEEEEcCCCee-----EEEeecCCCcEEEEEEeeC---CCCEEEEEe-CCCcEEEEEccCCeeeeEEeecCceeEEEE
Q 017314 152 NNLYVWDVNSGRV-----RHTLTGHTDKVCAVDVSKI---SSRHVVSAA-YDRTLKVWDLHKGYCVNTIIFHSNCNALAF 222 (373)
Q Consensus 152 ~~i~iwd~~~~~~-----~~~~~~h~~~v~~~~~~~~---~~~~~~s~s-~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 222 (373)
++|++...+...+ ...|.-|.+.|..++|... .+..+++++ .|..|.+-|...|+..+.+..|..-.-.-+
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly 190 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY 190 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE
Confidence 9999987654332 3456678899999988642 244566655 577888889989988888877765333346
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCeeeEEEec--c----cccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeee
Q 017314 223 SMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA--H----SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR 296 (373)
Q Consensus 223 ~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~----~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~ 296 (373)
+-+|..+++|+.|.+||+||++-..++..+.. | ....|.+++.+|.|++|+++..|..+.+||++.+++++.+.
T Consensus 191 swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ 270 (350)
T KOG0641|consen 191 SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH 270 (350)
T ss_pred EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC
Confidence 77899999999999999999998887776632 1 22579999999999999999999999999999999998887
Q ss_pred ecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccC----ceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEc
Q 017314 297 ATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK----ADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372 (373)
Q Consensus 297 ~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~----~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW 372 (373)
.|...+. .+-|+|.-.|+++||-|..|++=|+.. .-++-....|...+..+.|+|..--+++.|.|.++.+|
T Consensus 271 phsadir----~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 271 PHSADIR----CVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLW 346 (350)
T ss_pred CCcccee----EEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEe
Confidence 6665544 467999999999999999999998753 22334456799999999999998889999999999999
Q ss_pred C
Q 017314 373 T 373 (373)
Q Consensus 373 ~ 373 (373)
.
T Consensus 347 a 347 (350)
T KOG0641|consen 347 A 347 (350)
T ss_pred c
Confidence 4
No 92
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=5.3e-31 Score=224.10 Aligned_cols=311 Identities=21% Similarity=0.316 Sum_probs=243.6
Q ss_pred hHhHHHHhHHHHHHHHHHhhHHHHhhchhhHHHHHHHHHHHH---h----------------------------------
Q 017314 5 AKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDRLKA---S---------------------------------- 47 (373)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------------------------------- 47 (373)
.+.++-+|.++.-++|+++|+++++++++......--.+... .
T Consensus 104 ~q~~e~~n~~~~l~~~~~~~r~~e~la~~~~~l~~~~~r~~s~~ga~~~~~~d~~v~~~lpS~~~~~ld~h~gev~~v~~ 183 (459)
T KOG0288|consen 104 EQKAEFENAELALREMRRKMRIAERLAEALKDLGLKDLRRQSVDGAVPRTEDDHFVEDTLPSRALFVLDAHEGEVHDVEF 183 (459)
T ss_pred HhhhhhccchhhHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhcCCCccccCchhhhcccchhhhhhhhccccccceeEE
Confidence 367778888899999999999999988754332211111111 0
Q ss_pred --cHHHHhcccccceeeccccCcccccccccccc--ceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCcee
Q 017314 48 --GLEKLAKQQVDGVVRRSEEGAEFFAESTVPST--CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLS 123 (373)
Q Consensus 48 --~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 123 (373)
+-..++++..|..+..|+. .+.+ ...+|.+-.++|+++.|.+++..+++++.|+.+++|++...+..
T Consensus 184 l~~sdtlatgg~Dr~Ik~W~v---------~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~ 254 (459)
T KOG0288|consen 184 LRNSDTLATGGSDRIIKLWNV---------LGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLR 254 (459)
T ss_pred ccCcchhhhcchhhhhhhhhc---------ccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhh
Confidence 0012222222222222221 1222 34567788899999999999999999999999999999999999
Q ss_pred eeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcc
Q 017314 124 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 203 (373)
Q Consensus 124 ~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~ 203 (373)
.++.||.+.|+++.|......+++|+.|.+|++||+....+..++-. ...+..+.+. ...++||-.|++||+||++
T Consensus 255 ~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~---~~~~~SgH~DkkvRfwD~R 330 (459)
T KOG0288|consen 255 HTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS---ISDVISGHFDKKVRFWDIR 330 (459)
T ss_pred hhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec---ceeeeecccccceEEEecc
Confidence 99999999999999988887799999999999999999877766532 2334444443 4468899999999999999
Q ss_pred CCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEeccc---ccceEEEEEcCCCCEEEEeeCCCe
Q 017314 204 KGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS---LAAVTSISLSRSGNIILTSGRDNL 280 (373)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d~~ 280 (373)
+..+...++.+..++++..+++|..|.+++.|.++.+.|+++.+....+.... ....+.+.|||++.|+++||.|+.
T Consensus 331 s~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs 410 (459)
T KOG0288|consen 331 SADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS 410 (459)
T ss_pred CCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc
Confidence 99999999999999999999999999999999999999999988877765432 234788999999999999999999
Q ss_pred EEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEE
Q 017314 281 HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIW 330 (373)
Q Consensus 281 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iw 330 (373)
++||++.++++...+...... ..+..+.++|.|.+|++++.++.+.+|
T Consensus 411 v~iW~v~tgKlE~~l~~s~s~--~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 411 VYIWSVFTGKLEKVLSLSTSN--AAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EEEEEccCceEEEEeccCCCC--cceEEEEEcCCCchhhcccCCcceEec
Confidence 999999988876665543322 134457789999999999999999999
No 93
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=3.5e-30 Score=217.00 Aligned_cols=235 Identities=26% Similarity=0.445 Sum_probs=184.0
Q ss_pred CccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCC---EEEEEeCCCcEEEEEcCCC
Q 017314 86 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR---SVIAASSSNNLYVWDVNSG 162 (373)
Q Consensus 86 ~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~s~s~d~~i~iwd~~~~ 162 (373)
-|...|.++... +..++||+.||++|+||. .|+....+.||.+++.++++-..+. .+++++.|.++++|-.+.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 388999999887 789999999999999996 4788899999999999888644333 5999999999999998876
Q ss_pred ee----EEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccC-------------------------CeeeeEEee
Q 017314 163 RV----RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-------------------------GYCVNTIIF 213 (373)
Q Consensus 163 ~~----~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~-------------------------~~~~~~~~~ 213 (373)
.. +....||...|-+++..+ ++..++|||+|.+|++|+..+ +.++-++..
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 43 334459999999999877 678899999999999999321 112334445
Q ss_pred cCc-eeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEcccccee
Q 017314 214 HSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVC 292 (373)
Q Consensus 214 ~~~-~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~ 292 (373)
|.. |.++.|++ ...+++++.|.+|+.||+.++..+.++... ..++++.++|
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~--ksl~~i~~~~------------------------- 310 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN--KSLNCISYSP------------------------- 310 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC--cceeEeeccc-------------------------
Confidence 543 77888887 778999999999999999999887776654 3455555444
Q ss_pred eeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCc--e-EEEEeccCCccEEEEEEcCCCC-cEEEEeCCCe
Q 017314 293 GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA--D-IVRTLKEHTAPVLSCSWSGLGK-PLASADKNGV 368 (373)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~--~-~~~~l~~h~~~V~~~~~s~~g~-~l~s~s~dg~ 368 (373)
...+|++||.|..|++||..++ . ..++|.+|.+-|.+|.|+|... +|++||-|++
T Consensus 311 ---------------------~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t 369 (423)
T KOG0313|consen 311 ---------------------LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT 369 (423)
T ss_pred ---------------------ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe
Confidence 4455555555666666655442 2 3467889999999999999765 7899999999
Q ss_pred EEEcC
Q 017314 369 VCVWT 373 (373)
Q Consensus 369 i~iW~ 373 (373)
+++||
T Consensus 370 ~klWD 374 (423)
T KOG0313|consen 370 VKLWD 374 (423)
T ss_pred EEEEE
Confidence 99996
No 94
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.97 E-value=3.7e-28 Score=215.88 Aligned_cols=268 Identities=16% Similarity=0.139 Sum_probs=204.7
Q ss_pred CEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEE
Q 017314 101 ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSV-IAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVD 179 (373)
Q Consensus 101 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 179 (373)
..++|++.|+.|++||+.+++....+..+.. +..++|+|+++.+ ++++.++.|++||+.+++....+..+.. +..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 5788999999999999999988887776543 6779999999976 5667889999999999988777766544 45677
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCC-cEEEEECCCCeeeEEEeccccc
Q 017314 180 VSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDG-NLRLWDIQTGKLLSEVAAHSLA 258 (373)
Q Consensus 180 ~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~~~ 258 (373)
+++.....+++++.|+.+++||+.++..+..+.....+..++++|+|.++++++.++ .+.+||..+++....+... .
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~--~ 157 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD--Q 157 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC--C
Confidence 877433344566678999999999888777766555678899999999999888775 4678899988776654433 3
Q ss_pred ceEEEEEcCCCCEEEE-eeCCCeEEEEEccccceeeeeeecCCee---ecCeeeeEECCCCcEEEE-EeCCCcEEEEEcc
Q 017314 259 AVTSISLSRSGNIILT-SGRDNLHNLFDIRSLEVCGSLRATGNRV---ASNWSRSCISPDESYVAA-GSADGSVYIWSIS 333 (373)
Q Consensus 259 ~v~~~~~~~~~~~l~s-~~~d~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~l~s-gs~Dg~i~iwd~~ 333 (373)
....++|+|++++|+. +..++.+.+||+.+.+....+....... ......++++|++++++. .+.++.|.+||+.
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 4577999999998854 4568999999999887666554322111 011123568999998544 4556789999999
Q ss_pred CceEEEEeccCCccEEEEEEcCCCCcEEEE-eCCCeEEEcC
Q 017314 334 KADIVRTLKEHTAPVLSCSWSGLGKPLASA-DKNGVVCVWT 373 (373)
Q Consensus 334 ~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~-s~dg~i~iW~ 373 (373)
+++....+. +...+.+++|+|+|++|+++ +.+|.|++|+
T Consensus 238 ~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 238 TYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred CCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 888776653 34578999999999999876 5689999996
No 95
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=5.4e-29 Score=200.87 Aligned_cols=233 Identities=20% Similarity=0.319 Sum_probs=203.4
Q ss_pred eccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccC
Q 017314 125 TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 204 (373)
Q Consensus 125 ~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~ 204 (373)
.+.||.-+++.+.++.+|.+|++++.|.++.||--.+|+.+.++.||++.|++++... +...++|||.|.++++||+.+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence 3678999999999999999999999999999999999999999999999999999987 678999999999999999999
Q ss_pred CeeeeEEeecCceeEEEEccCCCEEEEEe-----CCCcEEEEECC-------CCeeeEEEecccccceEEEEEcCCCCEE
Q 017314 205 GYCVNTIIFHSNCNALAFSMDGQTIFSGH-----IDGNLRLWDIQ-------TGKLLSEVAAHSLAAVTSISLSRSGNII 272 (373)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~~l~sg~-----~dg~i~iwd~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l 272 (373)
|+++.++..+..+..+.|+++|++++... ..+.|.++|++ ..++...+..+. ..++..-|+|.+.+|
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~-skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD-SKITSALWGPLGETI 162 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-cceeeeeecccCCEE
Confidence 99999999999999999999999887654 35679999998 345566676665 789999999999999
Q ss_pred EEeeCCCeEEEEEccccc-eeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEE
Q 017314 273 LTSGRDNLHNLFDIRSLE-VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSC 351 (373)
Q Consensus 273 ~s~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~ 351 (373)
++|..|+.|..||++++. .+.....|.. .++.++++||..|+++||.|.+-++||+.+-+.++++. ...||++.
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~----~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~a 237 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSS----KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTA 237 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhcc----ccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccce
Confidence 999999999999999864 3333333333 44557899999999999999999999999999999886 56799999
Q ss_pred EEcCCCCcEEEEe
Q 017314 352 SWSGLGKPLASAD 364 (373)
Q Consensus 352 ~~s~~g~~l~s~s 364 (373)
+++|.-..++-|+
T Consensus 238 aisP~~d~VilgG 250 (327)
T KOG0643|consen 238 AISPLLDHVILGG 250 (327)
T ss_pred ecccccceEEecC
Confidence 9999877666654
No 96
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-29 Score=226.71 Aligned_cols=240 Identities=23% Similarity=0.365 Sum_probs=211.2
Q ss_pred ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccc-cccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeE
Q 017314 87 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG-CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR 165 (373)
Q Consensus 87 h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 165 (373)
+...|+++.|+++|+.|+.|..+|.|.|||.++.+.+..+.+ |...|-+++|. +..+.+|+.|+.|..+|++..+..
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence 478999999999999999999999999999999999999988 99999999997 678999999999999999987654
Q ss_pred EE-eecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC-ceeEEEEcc-CCCEEEEE--eCCCcEEE
Q 017314 166 HT-LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSM-DGQTIFSG--HIDGNLRL 240 (373)
Q Consensus 166 ~~-~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~-~g~~l~sg--~~dg~i~i 240 (373)
.. +.+|...|+.+.|++ ++.++++|+.|+.+.|||.....++.++..|. .|.+++|+| ....||+| +.|+.|++
T Consensus 294 ~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f 372 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF 372 (484)
T ss_pred hhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence 44 899999999999998 68899999999999999997777777776654 589999999 55677774 57999999
Q ss_pred EECCCCeeeEEEecccccceEEEEEcCCCCEEEEe--eCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEE
Q 017314 241 WDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTS--GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 318 (373)
Q Consensus 241 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 318 (373)
||..+++.+..+... ..|++|.|++..+-|+++ -.++.|.||+..+...+..+.+|..++.. ++.+|||.++
T Consensus 373 wn~~~g~~i~~vdtg--sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~----la~SPdg~~i 446 (484)
T KOG0305|consen 373 WNTNTGARIDSVDTG--SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLY----LALSPDGETI 446 (484)
T ss_pred EEcCCCcEecccccC--CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEE----EEECCCCCEE
Confidence 999999999887765 589999999999776664 35678999999999888999888887654 6789999999
Q ss_pred EEEeCCCcEEEEEccCc
Q 017314 319 AAGSADGSVYIWSISKA 335 (373)
Q Consensus 319 ~sgs~Dg~i~iwd~~~~ 335 (373)
++|+.|.++++|++-..
T Consensus 447 ~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 447 VTGAADETLRFWNLFDE 463 (484)
T ss_pred EEecccCcEEeccccCC
Confidence 99999999999998764
No 97
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=9.9e-31 Score=216.37 Aligned_cols=243 Identities=22% Similarity=0.345 Sum_probs=212.0
Q ss_pred EecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeecc-ccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 017314 83 KINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY-GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 161 (373)
Q Consensus 83 ~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 161 (373)
.|.-|..+|.|+.|+.|...|++|+.||.|++|.+.+|.++..+. .|+..|+++.|+.|+..+++++.|.++||--+.+
T Consensus 258 ~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS 337 (508)
T KOG0275|consen 258 NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS 337 (508)
T ss_pred ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc
Confidence 455688999999999999999999999999999999999998887 8999999999999999999999999999999999
Q ss_pred CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC---ceeEEEEcc-CCCEEEEEeCCCc
Q 017314 162 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS---NCNALAFSM-DGQTIFSGHIDGN 237 (373)
Q Consensus 162 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~-~g~~l~sg~~dg~ 237 (373)
|+++..++||+..|+...|.+ ++++++++|.||+|++|+..+..|+.++.... .++.+..-| +...++.+...++
T Consensus 338 GK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsnt 416 (508)
T KOG0275|consen 338 GKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNT 416 (508)
T ss_pred chhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCe
Confidence 999999999999999998876 78999999999999999999999999886543 377777777 4567888888999
Q ss_pred EEEEECCCCeeeEEEeccc--ccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCC
Q 017314 238 LRLWDIQTGKLLSEVAAHS--LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE 315 (373)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 315 (373)
|.|-++. |+.++.+.... .+..-+..++|.|.++.+.+.|+.+..|...++....++..|...+.. ...+|..
T Consensus 417 v~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIG----l~HHPHq 491 (508)
T KOG0275|consen 417 VYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIG----LTHHPHQ 491 (508)
T ss_pred EEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccc----cccCccc
Confidence 9999884 67777775432 245667789999999999999999999999988877777766554332 4568999
Q ss_pred cEEEEEeCCCcEEEEE
Q 017314 316 SYVAAGSADGSVYIWS 331 (373)
Q Consensus 316 ~~l~sgs~Dg~i~iwd 331 (373)
.+||+=++||.+++|.
T Consensus 492 NllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 492 NLLASYSEDGLLKLWK 507 (508)
T ss_pred chhhhhcccchhhhcC
Confidence 9999999999999994
No 98
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5.3e-30 Score=214.75 Aligned_cols=269 Identities=20% Similarity=0.336 Sum_probs=218.1
Q ss_pred cHHHHhcccccceeeccccCccccccccccccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeecc
Q 017314 48 GLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY 127 (373)
Q Consensus 48 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 127 (373)
.+..+++++.||.++.|+.... .|..++.+|.|.|..++++. ..++++|.|.+|+.|-++. .+..++.
T Consensus 78 ~ls~~aSGs~DG~VkiWnlsqR---------~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~til 145 (433)
T KOG0268|consen 78 KLSTVASGSCDGEVKIWNLSQR---------ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTIL 145 (433)
T ss_pred hhhhhhccccCceEEEEehhhh---------hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeee
Confidence 4567888899999999987653 46788999999999999987 7899999999999999865 3444443
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCee
Q 017314 128 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC 207 (373)
Q Consensus 128 ~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~ 207 (373)
+ ...++.+.-+.-+..+++++ ..|-|||.....++..+.--.+.+.++.|+|.....|++|+.|++|.++|++.+.+
T Consensus 146 g-~s~~~gIdh~~~~~~FaTcG--e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P 222 (433)
T KOG0268|consen 146 G-KSVYLGIDHHRKNSVFATCG--EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP 222 (433)
T ss_pred c-cccccccccccccccccccC--ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc
Confidence 3 44566666555555566554 46999999988999999988999999999999999999999999999999999999
Q ss_pred eeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeee-EEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEc
Q 017314 208 VNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL-SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI 286 (373)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~ 286 (373)
++.+......+.++|+|.+-.+++|+.|..++.+|++..+.. .....| ...|.+++|+|.|+-+++||.|.+|+||..
T Consensus 223 l~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh-vsAV~dVdfsptG~EfvsgsyDksIRIf~~ 301 (433)
T KOG0268|consen 223 LKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH-VSAVMDVDFSPTGQEFVSGSYDKSIRIFPV 301 (433)
T ss_pred cceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhccc-ceeEEEeccCCCcchhccccccceEEEeec
Confidence 999988888999999998888889999999999999876543 334444 478999999999999999999999999998
Q ss_pred cccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCc
Q 017314 287 RSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA 335 (373)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~ 335 (373)
+....... .+..++.. ...+.+|.|.+|++|||+|+.|++|.-...
T Consensus 302 ~~~~SRdi--YhtkRMq~-V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 302 NHGHSRDI--YHTKRMQH-VFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred CCCcchhh--hhHhhhhe-eeEEEEeccccEEEecCCCcceeeeecchh
Confidence 76432211 12222221 223568999999999999999999986543
No 99
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=2.4e-28 Score=199.80 Aligned_cols=286 Identities=19% Similarity=0.285 Sum_probs=218.1
Q ss_pred ecCccCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCce----------ee-----eccccccceEEEEEcC-CCCEEE
Q 017314 84 INAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTGSL----------SS-----TLYGCLGSVLDLAITH-DNRSVI 146 (373)
Q Consensus 84 ~~~h~~~v~~~~~~~-~~~~l~s~s~D~~v~iwd~~~~~~----------~~-----~~~~~~~~v~~~~~~~-~~~~l~ 146 (373)
.+.|.+.|.++...+ .|++++||+.||.|.+||+++... +. .-.+|.-.|.++.|-| |...+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 356999999999987 578999999999999999975431 11 1235677888888766 556888
Q ss_pred EEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCC--CEEEEEeCCCcEEEEEccCCeeeeEEeecC-ceeEEEEc
Q 017314 147 AASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISS--RHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFS 223 (373)
Q Consensus 147 s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~ 223 (373)
++|.|++++|||.++.+....|+ -.+.|...+++|... .++++|..|-+|++-|+.+|.+.+++..|. ++.++.|+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 99999999999999998877775 456777777777543 356778889999999999999999998875 59999999
Q ss_pred cCCCE-EEEEeCCCcEEEEECCCC-eeeEEEecc-------------cccceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q 017314 224 MDGQT-IFSGHIDGNLRLWDIQTG-KLLSEVAAH-------------SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS 288 (373)
Q Consensus 224 ~~g~~-l~sg~~dg~i~iwd~~~~-~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~ 288 (373)
|...+ |++|+.||.||+||++.. .+...+..| +.+.+..++|..++.++++++.|..+++|+..+
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 97766 568999999999999864 233332222 236799999999999999999999999999876
Q ss_pred cceeeeee---ecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeC
Q 017314 289 LEVCGSLR---ATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADK 365 (373)
Q Consensus 289 ~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~ 365 (373)
++..-.-. .+.......+... +-+...++---.|+.+.++++-.+..+..++.|...|.+++|.|+=+...+++.
T Consensus 278 G~ntl~~~g~~~~n~~~~~~~~~~--~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~ 355 (397)
T KOG4283|consen 278 GRNTLREFGPIIHNQTTSFAVHIQ--SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDM 355 (397)
T ss_pred CcccccccccccccccccceEEEe--ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcccc
Confidence 54211100 0111111111111 223333333345688999999999999999999999999999999999999999
Q ss_pred CCeEEEc
Q 017314 366 NGVVCVW 372 (373)
Q Consensus 366 dg~i~iW 372 (373)
||.|..|
T Consensus 356 d~ni~~w 362 (397)
T KOG4283|consen 356 NGNIYMW 362 (397)
T ss_pred CCccccc
Confidence 9999988
No 100
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-29 Score=201.43 Aligned_cols=246 Identities=22% Similarity=0.359 Sum_probs=194.2
Q ss_pred cCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC---ceeeeccccccceEEEEEcC--CCCEEEEEeCCCcEEEEEc
Q 017314 85 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG---SLSSTLYGCLGSVLDLAITH--DNRSVIAASSSNNLYVWDV 159 (373)
Q Consensus 85 ~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~ 159 (373)
+.|+..|..+....-|++|+|||.|++|||+.+.++ .++.++.||.+||..++|.. .|.+|+++++|+.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 468999999999999999999999999999998764 45788999999999999987 7899999999999999998
Q ss_pred CCCe--eEEEeecCCCcEEEEEEeeCC-CCEEEEEeCCCcEEEEEccCC-e-eeeEE-e-ecCceeEEEEccC---C---
Q 017314 160 NSGR--VRHTLTGHTDKVCAVDVSKIS-SRHVVSAAYDRTLKVWDLHKG-Y-CVNTI-I-FHSNCNALAFSMD---G--- 226 (373)
Q Consensus 160 ~~~~--~~~~~~~h~~~v~~~~~~~~~-~~~~~s~s~D~~i~vwd~~~~-~-~~~~~-~-~~~~~~~~~~~~~---g--- 226 (373)
++++ ..+....|...|++++|.|.+ +-.|+++|.||+|.|.+.+.. . ....+ . +.-.|+++++.|- |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 8874 345667899999999998854 345788999999999988654 2 11111 2 2345899999986 4
Q ss_pred --------CEEEEEeCCCcEEEEECCCCee--eEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeee
Q 017314 227 --------QTIFSGHIDGNLRLWDIQTGKL--LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR 296 (373)
Q Consensus 227 --------~~l~sg~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~ 296 (373)
+.|++|+.|..|+||+...++- ...+..|. ..|..+++.|.-
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~-dwVRDVAwaP~~--------------------------- 219 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHK-DWVRDVAWAPSV--------------------------- 219 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcc-hhhhhhhhcccc---------------------------
Confidence 5699999999999999887632 23355565 667777776642
Q ss_pred ecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCc-e--EEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 297 ATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA-D--IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 297 ~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~-~--~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
.--..+|||||.||+|.||-.... + ....++....++++++||+.|+.|+.++.|..|.+|.
T Consensus 220 ---------------gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 220 ---------------GLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ---------------CCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 112357899999999999976532 1 1223445667899999999999999999999999993
No 101
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.97 E-value=7.4e-29 Score=221.55 Aligned_cols=274 Identities=23% Similarity=0.354 Sum_probs=211.9
Q ss_pred CCEEEEeeCCCcEEEEeCCCCce------eeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEE--eecC
Q 017314 100 SARLISGGQDKSIKLWDTNTGSL------SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT--LTGH 171 (373)
Q Consensus 100 ~~~l~s~s~D~~v~iwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~--~~~h 171 (373)
...|+.+-+||.|.++|.....- +.....|.+.|.++.|-|....|++++.|.++++||++++++... +.||
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 45789999999999999865322 244567999999999999777899999999999999999988776 8999
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCee-------e------eE--------------EeecC-ceeE---E
Q 017314 172 TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC-------V------NT--------------IIFHS-NCNA---L 220 (373)
Q Consensus 172 ~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~-------~------~~--------------~~~~~-~~~~---~ 220 (373)
+..|.+++|.+.+...|++|+.||.|.|||++-... . .+ ...+. .+.+ +
T Consensus 144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv 223 (720)
T KOG0321|consen 144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV 223 (720)
T ss_pred ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence 999999999999999999999999999999863320 0 00 00011 1222 3
Q ss_pred EEccCCCEEEEEeC-CCcEEEEECCCCeeeEEE--------eccc--ccceEEEEEcCCCCEEEEeeCCCeEEEEEcccc
Q 017314 221 AFSMDGQTIFSGHI-DGNLRLWDIQTGKLLSEV--------AAHS--LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL 289 (373)
Q Consensus 221 ~~~~~g~~l~sg~~-dg~i~iwd~~~~~~~~~~--------~~~~--~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~ 289 (373)
-+..|...|++++. |+.|++||++........ ..+. ...++++..+..|.+|.+.+.|+.|.+|+++..
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 44568888998777 999999999976543322 1121 135788889999999988888999999999876
Q ss_pred ceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceE-EEEeccCCccEEEEEEcCCC-CcEEEEeCCC
Q 017314 290 EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI-VRTLKEHTAPVLSCSWSGLG-KPLASADKNG 367 (373)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~-~~~l~~h~~~V~~~~~s~~g-~~l~s~s~dg 367 (373)
...-.....+..+..-+...+++||+.+|++|+.|...++|.+.+.+. ...+.+|.-.|++++|.|.. .-+++++.|.
T Consensus 304 s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~ 383 (720)
T KOG0321|consen 304 SISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDF 383 (720)
T ss_pred CcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCc
Confidence 543222223333333445567899999999999999999999987554 56778999999999999864 3678889999
Q ss_pred eEEEcC
Q 017314 368 VVCVWT 373 (373)
Q Consensus 368 ~i~iW~ 373 (373)
.++||+
T Consensus 384 ~~kiW~ 389 (720)
T KOG0321|consen 384 RVKIWR 389 (720)
T ss_pred ceEEEe
Confidence 999995
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.5e-29 Score=224.06 Aligned_cols=314 Identities=21% Similarity=0.334 Sum_probs=244.0
Q ss_pred HHhcccccceeeccccCccccccccccccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC--ceeeeccc
Q 017314 51 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG--SLSSTLYG 128 (373)
Q Consensus 51 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~--~~~~~~~~ 128 (373)
-+.++..|+.++.|........ ....+..++..|...|..++...+++.|+|+|.|-+|++|+...+ -++.++..
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~---~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~ 115 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNE---PSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRT 115 (735)
T ss_pred eEEecCCCceEEEeccccccCC---cccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhc
Confidence 4788899999999876543211 112256778899999999999999999999999999999999877 67888999
Q ss_pred cccceEEEEE-cCCCCEEEEEeCCCcEEEEEcCCCe--e--------EEEee-cCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 017314 129 CLGSVLDLAI-THDNRSVIAASSSNNLYVWDVNSGR--V--------RHTLT-GHTDKVCAVDVSKISSRHVVSAAYDRT 196 (373)
Q Consensus 129 ~~~~v~~~~~-~~~~~~l~s~s~d~~i~iwd~~~~~--~--------~~~~~-~h~~~v~~~~~~~~~~~~~~s~s~D~~ 196 (373)
|...|.++++ .++...+++|+-|+.|.+||++++. . ...+. |+.+.|++++.++ .+..+++|+..+.
T Consensus 116 H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 116 HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKD 194 (735)
T ss_pred ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccc
Confidence 9999999999 7888899999999999999999772 2 22333 8999999999887 4568999999999
Q ss_pred EEEEEccCCeeeeEEeecC-ceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEe
Q 017314 197 LKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTS 275 (373)
Q Consensus 197 i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 275 (373)
+++||.+++..+..+.+|. ++.++-.++||+.++++|+||+|++||+...+++.++..|. ..|-++..+|+-..+.+|
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~-e~VWaL~~~~sf~~vYsG 273 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHK-EGVWALQSSPSFTHVYSG 273 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEecc-CceEEEeeCCCcceEEec
Confidence 9999999998877777775 59999999999999999999999999999999999999998 559999999999999999
Q ss_pred eCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEE-------ec---cC-
Q 017314 276 GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT-------LK---EH- 344 (373)
Q Consensus 276 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~-------l~---~h- 344 (373)
++|+.|..-|+++......+-....++.. ...+.+..-+-+++.|+.|+-|-......+.. .. .|
T Consensus 274 ~rd~~i~~Tdl~n~~~~tlick~daPv~~----l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~ 349 (735)
T KOG0308|consen 274 GRDGNIYRTDLRNPAKSTLICKEDAPVLK----LHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHS 349 (735)
T ss_pred CCCCcEEecccCCchhheEeecCCCchhh----hhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCcc
Confidence 99999999999875432222211112111 12222233336677888888886542111100 00 01
Q ss_pred -------------CccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 345 -------------TAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 345 -------------~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
..++...+.=.|-+++.|-+.+|.+.+||
T Consensus 350 ~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 350 CDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD 391 (735)
T ss_pred ccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence 11344455556778999999999999996
No 103
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.8e-27 Score=187.90 Aligned_cols=246 Identities=25% Similarity=0.389 Sum_probs=196.4
Q ss_pred eEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCce-----eeeccccccceEEEEEcCC----CCEEEEEe-C
Q 017314 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL-----SSTLYGCLGSVLDLAITHD----NRSVIAAS-S 150 (373)
Q Consensus 81 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~----~~~l~s~s-~ 150 (373)
...-+.|.+.|+|.+|+|+|.+|++||.|.+|++.-++...+ -..+.-|.+.|.+++|..+ +..|++++ .
T Consensus 82 ~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 82 CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence 344567899999999999999999999999999976654322 2346678999999999654 34555544 4
Q ss_pred CCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEee--c------CceeEEEE
Q 017314 151 SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF--H------SNCNALAF 222 (373)
Q Consensus 151 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~--~------~~~~~~~~ 222 (373)
|..|++-|-.+|+..+.+.+|++-|.++ ++. ++-.+++||.|++||+||++-..+++++.. + +.+.++++
T Consensus 162 dc~iy~tdc~~g~~~~a~sghtghilal-ysw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALSGHTGHILAL-YSW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred cceEEEeecCCCCcceeecCCcccEEEE-EEe-cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 5677888888999999999999999876 333 467899999999999999998888877632 1 34788999
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccc----eeeeeeec
Q 017314 223 SMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE----VCGSLRAT 298 (373)
Q Consensus 223 ~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~----~~~~~~~~ 298 (373)
.|.|++|++|..|....+||++.++.++.+..|. ..|.++.|+|...++++|+.|..|++-|+..-- .+.....|
T Consensus 240 dpsgrll~sg~~dssc~lydirg~r~iq~f~phs-adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh 318 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHS-ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH 318 (350)
T ss_pred CCCcceeeeccCCCceEEEEeeCCceeeeeCCCc-cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec
Confidence 9999999999999999999999999999999987 899999999999999999999999999986311 11111122
Q ss_pred CCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEcc
Q 017314 299 GNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS 333 (373)
Q Consensus 299 ~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~ 333 (373)
.... ..+-++|..--+++.|.|.++.+|-+.
T Consensus 319 kdk~----i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 319 KDKA----IQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cCce----EEEEecCccceeeeccCcceEEEeccC
Confidence 2221 123467888888999999999999753
No 104
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1e-28 Score=223.26 Aligned_cols=287 Identities=18% Similarity=0.301 Sum_probs=227.5
Q ss_pred cCccCcEEEEEEcC-C----------CCEEEEeeCCCcEEEEeCCCC---ceee--------------------------
Q 017314 85 NAHEGGCASILFEY-N----------SARLISGGQDKSIKLWDTNTG---SLSS-------------------------- 124 (373)
Q Consensus 85 ~~h~~~v~~~~~~~-~----------~~~l~s~s~D~~v~iwd~~~~---~~~~-------------------------- 124 (373)
--|...|+.+.--| + ...+.|+|.|++||+||+..+ ....
T Consensus 366 lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~ 445 (1080)
T KOG1408|consen 366 LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASA 445 (1080)
T ss_pred eeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccC
Confidence 34777777765433 1 235899999999999998752 1100
Q ss_pred --------eccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeC--CCCEEEEEeCC
Q 017314 125 --------TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKI--SSRHVVSAAYD 194 (373)
Q Consensus 125 --------~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~~~s~s~D 194 (373)
...+....+.+++++|++++|++|...|+++||++...+....+.+|..+|.|+.++.+ ..++|+++|.|
T Consensus 446 ~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrd 525 (1080)
T KOG1408|consen 446 GIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRD 525 (1080)
T ss_pred CcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCC
Confidence 01122346899999999999999999999999999998888899999999999998853 34678999999
Q ss_pred CcEEEEEccCCe-eeeEEeecC-ceeEEEEccCC--CEEEEEeCCCcEEEEECCC-CeeeEEEecc----cccceEEEEE
Q 017314 195 RTLKVWDLHKGY-CVNTIIFHS-NCNALAFSMDG--QTIFSGHIDGNLRLWDIQT-GKLLSEVAAH----SLAAVTSISL 265 (373)
Q Consensus 195 ~~i~vwd~~~~~-~~~~~~~~~-~~~~~~~~~~g--~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~----~~~~v~~~~~ 265 (373)
+-|.|+|+.... .++++..|+ .++++.|.-+| ...++++.|+.|.+ +... ..-...+..| ....++.++.
T Consensus 526 RlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~V 604 (1080)
T KOG1408|consen 526 RLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAV 604 (1080)
T ss_pred ceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeee
Confidence 999999997665 445665654 58999998877 67889999998754 3322 1111111111 1256889999
Q ss_pred cCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCC
Q 017314 266 SRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHT 345 (373)
Q Consensus 266 ~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~ 345 (373)
+|..+++++++.|+.|++||+.+++....|++....-. ....+...|.|-|||+...|.++.++|+.+++++...-||.
T Consensus 605 dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG-~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHs 683 (1080)
T KOG1408|consen 605 DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG-DLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS 683 (1080)
T ss_pred CCCcceEEEEecccceEEEeccccceeeeecccccCCC-ceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcc
Confidence 99999999999999999999999999888876433211 22346689999999999999999999999999999999999
Q ss_pred ccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 346 APVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 346 ~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
..|+.+.|.+|-+.|++++.||+|.||+
T Consensus 684 E~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 684 EAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred hheeeeeecccchhheeecCCceEEEEE
Confidence 9999999999999999999999999995
No 105
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=1.2e-28 Score=210.97 Aligned_cols=250 Identities=18% Similarity=0.277 Sum_probs=212.1
Q ss_pred ccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 017314 78 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW 157 (373)
Q Consensus 78 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iw 157 (373)
.+...+|+||...|..+.|+++...+++++.|..|+||.............|..+|+.+...|.|.||++++.|++.-..
T Consensus 251 ~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fs 330 (506)
T KOG0289|consen 251 NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFS 330 (506)
T ss_pred hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEE
Confidence 34456789999999999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred EcCCCeeEEEeecCC--CcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC-ceeEEEEccCCCEEEEEeC
Q 017314 158 DVNSGRVRHTLTGHT--DKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHI 234 (373)
Q Consensus 158 d~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sg~~ 234 (373)
|+.++.++......+ -.+++..|+| ++..+.+|..|+.+++||+.++..+..|..|. .+..++|+-+|.++++++.
T Consensus 331 d~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 331 DISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred EccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec
Confidence 999998765544322 2468889998 78899999999999999999988887787775 5899999999999999999
Q ss_pred CCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEcc--ccceeeeeeecCCeeecCeeeeEEC
Q 017314 235 DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR--SLEVCGSLRATGNRVASNWSRSCIS 312 (373)
Q Consensus 235 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~s 312 (373)
|+.|++||+|..+...++......++.++.|++.|.+|+.+|.|-.|.+++-. .+.....+..+.... ..+.|.
T Consensus 410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~s----t~v~Fg 485 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLS----TGVRFG 485 (506)
T ss_pred CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhccccc----ceeeec
Confidence 99999999999998888887776789999999999999999888888777743 333343333332111 234577
Q ss_pred CCCcEEEEEeCCCcEEEEEc
Q 017314 313 PDESYVAAGSADGSVYIWSI 332 (373)
Q Consensus 313 ~~~~~l~sgs~Dg~i~iwd~ 332 (373)
...++++++|.|..++++.+
T Consensus 486 ~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 486 EHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccceEEeeccchhheEEeec
Confidence 78899999999999888754
No 106
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=1.1e-27 Score=219.91 Aligned_cols=286 Identities=21% Similarity=0.336 Sum_probs=234.0
Q ss_pred EEecCccCcEEEEEEcCCCC-EEEEeeCCCcEEEEeCCCCceeeecc-ccccceEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 017314 82 HKINAHEGGCASILFEYNSA-RLISGGQDKSIKLWDTNTGSLSSTLY-GCLGSVLDLAITHDNRSVIAASSSNNLYVWDV 159 (373)
Q Consensus 82 ~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 159 (373)
.+|+...+.|++++|..||. .|++|+..|.+-+||++..+....+. .|.+.|....|-|....+++++.|+..++|=.
T Consensus 238 ~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vf 317 (910)
T KOG1539|consen 238 MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVF 317 (910)
T ss_pred EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEe
Confidence 44543359999999999997 66777788999999999888776665 78899999999999999999999999888865
Q ss_pred CC--C--eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCC-------e---------------------e
Q 017314 160 NS--G--RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-------Y---------------------C 207 (373)
Q Consensus 160 ~~--~--~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~-------~---------------------~ 207 (373)
++ | +.++.-.||+.+..++.|....+.++.+++.|++++.+++... + +
T Consensus 318 D~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~ 397 (910)
T KOG1539|consen 318 DSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP 397 (910)
T ss_pred eCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence 54 3 4456667999999999998778888999999999887764210 0 0
Q ss_pred e--------------------------eE------------Eeec------CceeEEEEccCCCEEEEEeCCCcEEEEEC
Q 017314 208 V--------------------------NT------------IIFH------SNCNALAFSMDGQTIFSGHIDGNLRLWDI 243 (373)
Q Consensus 208 ~--------------------------~~------------~~~~------~~~~~~~~~~~g~~l~sg~~dg~i~iwd~ 243 (373)
+ .+ +... ..+.+++.++.|++.+.|++.|+|.+|++
T Consensus 398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNm 477 (910)
T KOG1539|consen 398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNM 477 (910)
T ss_pred ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEc
Confidence 0 00 0000 13578899999999999999999999999
Q ss_pred CCCeeeEEE---ecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEE
Q 017314 244 QTGKLLSEV---AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAA 320 (373)
Q Consensus 244 ~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 320 (373)
.+|-....+ ..|. .+|+.++.+.-++.+++++.+|.+++||.........+..... ......+.....++.
T Consensus 478 QSGi~r~sf~~~~ah~-~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~-----~~~iv~hr~s~l~a~ 551 (910)
T KOG1539|consen 478 QSGIHRKSFGDSPAHK-GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSS-----ITGIVYHRVSDLLAI 551 (910)
T ss_pred ccCeeecccccCcccc-CceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCC-----cceeeeeehhhhhhh
Confidence 999887777 3454 8999999999999999999999999999988776555543221 112334566778899
Q ss_pred EeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 321 GSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 321 gs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
+..|-.|+++|+.+.+.++.|.||...|++++|||||+||++++.|++||+||
T Consensus 552 ~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 99999999999999999999999999999999999999999999999999997
No 107
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=5.4e-28 Score=218.00 Aligned_cols=259 Identities=27% Similarity=0.447 Sum_probs=210.8
Q ss_pred HHhcccccceeeccccCccccccccccccceEEecCccCcEEE-EEEcC-CCCEEEEeeCCCcEEEEeCCCCceeeeccc
Q 017314 51 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCAS-ILFEY-NSARLISGGQDKSIKLWDTNTGSLSSTLYG 128 (373)
Q Consensus 51 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 128 (373)
.+...+.|+.++.|......+. ..+.+.+|.+-|.. ++|.+ ++.+|++|+.|.+|.+|...+..+..++++
T Consensus 27 ~i~s~sRd~t~~vw~~~~~~~l-------~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lkg 99 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKGKQYL-------ETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKG 99 (745)
T ss_pred EEeecCCCCceeeeeccCcccc-------cceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhc
Confidence 3566677888887765332221 23567788888876 88874 556799999999999999999999999999
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeee
Q 017314 129 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV 208 (373)
Q Consensus 129 ~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~ 208 (373)
|...|.+++...++. +++||.|.|+++|.. +++...+.+|+..|+++...|. +.++|||.|++||+|.- +.++
T Consensus 100 H~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e--~~~vTgsaDKtIklWk~--~~~l 172 (745)
T KOG0301|consen 100 HKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPE--NTYVTGSADKTIKLWKG--GTLL 172 (745)
T ss_pred cccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCC--CcEEeccCcceeeeccC--Cchh
Confidence 999999999888887 999999999999975 5667779999999999987763 38999999999999975 6788
Q ss_pred eEEeecCc-eeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q 017314 209 NTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR 287 (373)
Q Consensus 209 ~~~~~~~~-~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~ 287 (373)
+++..|.. |..+++-|++ .++|++.||.|++|++ +|.++.+..+|. .-+.+++...++..++++|.|+++++|+..
T Consensus 173 ~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ght-n~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 173 KTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHT-NFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred hhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccc-eEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 88988876 6788887764 5789999999999999 788888898887 789999999999999999999999999987
Q ss_pred ccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEcc
Q 017314 288 SLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS 333 (373)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~ 333 (373)
++.+.+..+.. +.|...++ ++ .-|++|+.||.||||...
T Consensus 250 --e~~q~I~lPtt---siWsa~~L-~N-gDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 250 --ECVQVITLPTT---SIWSAKVL-LN-GDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred --ceEEEEecCcc---ceEEEEEe-eC-CCEEEeccCceEEEEEec
Confidence 44555543332 33444444 33 357789999999999875
No 108
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=5e-28 Score=208.62 Aligned_cols=255 Identities=20% Similarity=0.370 Sum_probs=200.0
Q ss_pred CccCcEEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCce----------eeeccccccceEEEEEcCCC-CEEEEEeCCCc
Q 017314 86 AHEGGCASILFEYNS-ARLISGGQDKSIKLWDTNTGSL----------SSTLYGCLGSVLDLAITHDN-RSVIAASSSNN 153 (373)
Q Consensus 86 ~h~~~v~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~----------~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~ 153 (373)
-|.+.|..+.+.|.. ..+++++..+.|.|||..+..- -..+.||.+.-.+++|++.. ..|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 589999999988855 5677788899999999865321 12678898877888998866 47999999999
Q ss_pred EEEEEcCCC-------eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccC--CeeeeEEeec-CceeEEEEc
Q 017314 154 LYVWDVNSG-------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK--GYCVNTIIFH-SNCNALAFS 223 (373)
Q Consensus 154 i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~--~~~~~~~~~~-~~~~~~~~~ 223 (373)
|.+||+... .+...+.+|++.|..++|++.....+++++.|+.+.|||+++ .++......| ..++|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 999998643 246688999999999999999899999999999999999994 4444445554 459999999
Q ss_pred c-CCCEEEEEeCCCcEEEEECCCC-eeeEEEecccccceEEEEEcCCCC-EEEEeeCCCeEEEEEccccceeeeeeecCC
Q 017314 224 M-DGQTIFSGHIDGNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRSGN-IILTSGRDNLHNLFDIRSLEVCGSLRATGN 300 (373)
Q Consensus 224 ~-~g~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~ 300 (373)
| ++..||+||.|++|++||+|+. +.+..+..|. ..|..+.|+|... .|++++.|+.+.+||+......+.
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~-dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~------ 354 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHE-DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS------ 354 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCCC-cceEEEEeCCCCCceeEecccCCcEEEEeccccccccC------
Confidence 9 5677889999999999999875 4566777776 7999999999754 788889999999999865321110
Q ss_pred eeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCC-cEEEEeCCCeEEEcC
Q 017314 301 RVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK-PLASADKNGVVCVWT 373 (373)
Q Consensus 301 ~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~-~l~s~s~dg~i~iW~ 373 (373)
+. -..|| ..+++-.-.||...|..++|+|... .|+|++.|+.+.||+
T Consensus 355 ------------~e------da~dg--------ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 355 ------------PE------DAEDG--------PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred ------------hh------hhccC--------CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 00 00111 1233444568999999999999876 679999999999995
No 109
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.4e-27 Score=202.96 Aligned_cols=285 Identities=14% Similarity=0.255 Sum_probs=231.9
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC--CCceeeeccccccceEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCee
Q 017314 88 EGGCASILFEYNSARLISGGQDKSIKLWDTN--TGSLSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWDVNSGRV 164 (373)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~ 164 (373)
.++|+++.|+|.-..|++||.|++++||.+. +...++.+.--..++.+..|.|+|. .+++++.....+.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4789999999999999999999999999875 3345666665677899999999999 889999999999999998864
Q ss_pred E--EEeecCCC-cEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEE
Q 017314 165 R--HTLTGHTD-KVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLW 241 (373)
Q Consensus 165 ~--~~~~~h~~-~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iw 241 (373)
. ..+.++.. .+....+++ .+++|+..+..|.|.+.-..++..+.++.....+..++|+.|++.|++++.+|.|.+|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 3 33345543 345566777 5779999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeee--ecCCeeecCeeeeEECCCCcEEE
Q 017314 242 DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR--ATGNRVASNWSRSCISPDESYVA 319 (373)
Q Consensus 242 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~ 319 (373)
|++...+++.+.......-++++.++++.+||+|+..|.+.|||..+.......+ .........+..+.|+||.+.||
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLA 451 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILA 451 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhh
Confidence 9999999888876654566788889999999999999999999976432111110 00111223445578999999998
Q ss_pred EEeC--CCcEEEEEccCceEEEEeccC---CccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 320 AGSA--DGSVYIWSISKADIVRTLKEH---TAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 320 sgs~--Dg~i~iwd~~~~~~~~~l~~h---~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
.+|. +..+|+-.+.+.+....+... -+.|+|++|||.|.+||.|-.+|.+++|.
T Consensus 452 iaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 452 IASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 8875 668999999888877766543 35689999999999999999999999994
No 110
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.6e-27 Score=223.82 Aligned_cols=252 Identities=22% Similarity=0.316 Sum_probs=207.3
Q ss_pred ceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC-------C-----------ceeeeccccccceEEEEEcCC
Q 017314 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT-------G-----------SLSSTLYGCLGSVLDLAITHD 141 (373)
Q Consensus 80 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~-------~-----------~~~~~~~~~~~~v~~~~~~~~ 141 (373)
...+...|.+.|.|+.|++||++||+||.|+.|.||+... + +....+.+|.+.|.++.|+|+
T Consensus 61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~ 140 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD 140 (942)
T ss_pred hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence 3456678999999999999999999999999999999872 1 245678899999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeec-------
Q 017314 142 NRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH------- 214 (373)
Q Consensus 142 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~------- 214 (373)
+.+|++++.|++|.|||..+.+.+.++.+|...|..+.|.| -+++++|-+.|++|++|++..-.+.+.+..+
T Consensus 141 ~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~ 219 (942)
T KOG0973|consen 141 DSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLT 219 (942)
T ss_pred ccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCc
Confidence 99999999999999999999999999999999999999998 5789999999999999997665454444322
Q ss_pred CceeEEEEccCCCEEEEEeC----CCcEEEEECCCCeeeEEEecccccceEEEEEcCC-------------CC----EEE
Q 017314 215 SNCNALAFSMDGQTIFSGHI----DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS-------------GN----IIL 273 (373)
Q Consensus 215 ~~~~~~~~~~~g~~l~sg~~----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~----~l~ 273 (373)
.-...++|||||.+|++... -.++.|.+-.+.+.-..+.+|. .++.++.|+|. .+ .+|
T Consensus 220 T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~-~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~A 298 (942)
T KOG0973|consen 220 TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHS-APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAA 298 (942)
T ss_pred ceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCC-CceEEEEeChHHhccccccCCccCCCcceEEEE
Confidence 23578999999999998532 3368898888888888899998 69999999871 11 678
Q ss_pred EeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCce
Q 017314 274 TSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD 336 (373)
Q Consensus 274 s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~ 336 (373)
+|+.|+.+.||.....++..... +.....+...+++|||..|..+|.||+|.+..+...+
T Consensus 299 vgSqDrSlSVW~T~~~RPl~vi~---~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 299 VGSQDRSLSVWNTALPRPLFVIH---NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EecCCccEEEEecCCCCchhhhh---hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 89999999999976555432221 1112234456789999999999999999999987643
No 111
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.5e-26 Score=214.68 Aligned_cols=278 Identities=21% Similarity=0.334 Sum_probs=226.4
Q ss_pred cCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC-ceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe
Q 017314 85 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG-SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR 163 (373)
Q Consensus 85 ~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 163 (373)
.+|..+-+.++|.++|..|++++.||.||+|+.... ....++..+...|.+++. ++++|++++.+++|.+|....++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 479999999999999999999999999999998766 455555556677777665 55699999999999999999988
Q ss_pred eEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeec-CceeEEEEccCCCEEEEEeCCCcEEEEE
Q 017314 164 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWD 242 (373)
Q Consensus 164 ~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~sg~~dg~i~iwd 242 (373)
....+.-.+-++..++++. ++++++.||.|-.|++-+.........+..| ..+.++.|+|++.+|++.+-||.|++||
T Consensus 88 ~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred ccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 7666666777888898886 6889999999999999999877666666655 4589999999999999999999999999
Q ss_pred CCCCeeeEEEeccc-------ccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCC
Q 017314 243 IQTGKLLSEVAAHS-------LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE 315 (373)
Q Consensus 243 ~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 315 (373)
+.++.+...+..-. ...++.++|+|++..++..+.|+.|++|+...++....++.. .+...+..+.++|.|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~--~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK--LSSSKFSDLQWSPNG 244 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc--ccccceEEEEEcCCC
Confidence 99987766554321 235677899999999999999999999999998877776543 233346778899999
Q ss_pred cEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEE
Q 017314 316 SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV 371 (373)
Q Consensus 316 ~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~i 371 (373)
+|||+++-||.|.|||+.+-+. ......|.+++|-|++.-|-.-...|..-+
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred cEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeecccccc
Confidence 9999999999999999987222 233467999999999887655555554433
No 112
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=6.7e-28 Score=198.45 Aligned_cols=247 Identities=20% Similarity=0.330 Sum_probs=194.2
Q ss_pred eeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCC------------C------eeEEEeecCCCcEEEEEEeeCCC
Q 017314 124 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS------------G------RVRHTLTGHTDKVCAVDVSKISS 185 (373)
Q Consensus 124 ~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~------------~------~~~~~~~~h~~~v~~~~~~~~~~ 185 (373)
..+..|.+++.+.+|++||.++++|+.|..|+|.|++. + .+++++..|.++|.++.|+| ..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RE 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hh
Confidence 34567899999999999999999999999999999861 1 35788999999999999998 56
Q ss_pred CEEEEEeCCCcEEEEEccCCeee---eEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEec--ccccce
Q 017314 186 RHVVSAAYDRTLKVWDLHKGYCV---NTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA--HSLAAV 260 (373)
Q Consensus 186 ~~~~s~s~D~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~~~v 260 (373)
..++||+.|++|+++|+.+.... +.+.....+.+++|+|.|.+|+.|..-.++|+||+++.++...-.. .+...|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 78999999999999999764332 2233345689999999999999999999999999999887654432 223689
Q ss_pred EEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEE
Q 017314 261 TSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT 340 (373)
Q Consensus 261 ~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~ 340 (373)
+++.+++.+++.++++.||.|++||--+.+++.++...... ..+....|..+|+|+++.+.|..+++|.+.+++++..
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g--sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG--SEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC--ceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE
Confidence 99999999999999999999999999888887777532221 1223356899999999999999999999999999988
Q ss_pred eccC--Ccc---EEEEEEcCCCCcEEEEeC-CCeEEEcC
Q 017314 341 LKEH--TAP---VLSCSWSGLGKPLASADK-NGVVCVWT 373 (373)
Q Consensus 341 l~~h--~~~---V~~~~~s~~g~~l~s~s~-dg~i~iW~ 373 (373)
+.|. ++. -+...|+....|+..-+. .+.++-|+
T Consensus 343 YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWd 381 (430)
T KOG0640|consen 343 YTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWD 381 (430)
T ss_pred EecCCcccchhhhhhhhhcCccceEEccccccCceeecc
Confidence 8653 111 134456655555555433 24455553
No 113
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=7e-27 Score=207.61 Aligned_cols=290 Identities=18% Similarity=0.277 Sum_probs=225.4
Q ss_pred ccccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCE-EEEEeCCCcE
Q 017314 76 VPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRS-VIAASSSNNL 154 (373)
Q Consensus 76 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~s~d~~i 154 (373)
.|..|...+.+|.+.|.++...|.|.+|++||.||+||||.+.||.++.++. ..+.|.+++|+|.+.. +++++.+..+
T Consensus 388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCce
Confidence 5777888999999999999999999999999999999999999999988765 3458999999998864 4444444445
Q ss_pred EEEEcCCCe-------------------------------------eEEEeecCCCcEEEEEEeeCCCCEEEEEeC---C
Q 017314 155 YVWDVNSGR-------------------------------------VRHTLTGHTDKVCAVDVSKISSRHVVSAAY---D 194 (373)
Q Consensus 155 ~iwd~~~~~-------------------------------------~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~---D 194 (373)
.|-+..-|. -+...-.|...|..+.|+. .+.||++... .
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGN 545 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCc
Confidence 554432110 0122334778899999987 6889887654 4
Q ss_pred CcEEEEEccCCeeeeEE-eecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEE
Q 017314 195 RTLKVWDLHKGYCVNTI-IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIIL 273 (373)
Q Consensus 195 ~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 273 (373)
..|-|+++.......-+ .-+..+.++.|+|...+++.++. ..|+|||+....+++++.... ..|.+++++|.|..|+
T Consensus 546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~-kwiS~msihp~GDnli 623 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGS-KWISSMSIHPNGDNLI 623 (733)
T ss_pred ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCC-eeeeeeeecCCCCeEE
Confidence 67888888765433222 23445789999999999988875 579999998887777776655 6899999999999999
Q ss_pred EeeCCCeEEEEEcccc-ceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEcc-------C--ceEEEEecc
Q 017314 274 TSGRDNLHNLFDIRSL-EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS-------K--ADIVRTLKE 343 (373)
Q Consensus 274 s~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~-------~--~~~~~~l~~ 343 (373)
.++.|+.+..||+.-. ++..++..|...+. .++|++.-.+|++|+.||++.|+.-. + --+++.|++
T Consensus 624 ~gs~d~k~~WfDldlsskPyk~lr~H~~avr----~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~g 699 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVR----SVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRG 699 (733)
T ss_pred EecCCCeeEEEEcccCcchhHHhhhhhhhhh----hhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccC
Confidence 9999999999998643 34444555544333 36788888999999999999998521 1 134678899
Q ss_pred CCcc----EEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 344 HTAP----VLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 344 h~~~----V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
|... |..+.|+|...+|.|++.||+|++|+
T Consensus 700 H~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 700 HEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred ceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 9876 99999999999999999999999995
No 114
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=1.6e-27 Score=207.66 Aligned_cols=277 Identities=20% Similarity=0.336 Sum_probs=220.7
Q ss_pred CccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC---ceeeeccc--cccceEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 017314 86 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG---SLSSTLYG--CLGSVLDLAITHDNRSVIAASSSNNLYVWDVN 160 (373)
Q Consensus 86 ~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~---~~~~~~~~--~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 160 (373)
.|..-|-++.+|...+.++||| .|.|+|||+... ..+..+.- -.+-+.++.+.|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 5878888899999999999988 479999998643 12222221 23568889999999999999999999999997
Q ss_pred CCeeE--EEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc-eeEEEEccCCCEEEEEeCCCc
Q 017314 161 SGRVR--HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGN 237 (373)
Q Consensus 161 ~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~sg~~dg~ 237 (373)
...+. ..+....-...+++.+| +.+..++|..||.|+|||++....++++..|.. +.|+.+++||..|-+|+-|.+
T Consensus 496 apTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 65432 23333334456778887 678899999999999999999999999988865 899999999999999999999
Q ss_pred EEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcE
Q 017314 238 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY 317 (373)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 317 (373)
||.||++.++.+...... ..|.++.++|++.+|+.|-.++.+.+......+. ..+..|..-+ -.+-|++.|++
T Consensus 575 vRcWDlregrqlqqhdF~--SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yqlhlheScV----LSlKFa~cGkw 647 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHDFS--SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQLHLHESCV----LSLKFAYCGKW 647 (705)
T ss_pred eeehhhhhhhhhhhhhhh--hhheecccCCCccceeeecccCcEEEEecCCccc-eeecccccEE----EEEEecccCce
Confidence 999999998876654433 5799999999999999999988887766554332 1222222222 23568999999
Q ss_pred EEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEc
Q 017314 318 VAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372 (373)
Q Consensus 318 l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW 372 (373)
+++-+.|..+..|...-|..+...+. .++|++|..|.|.+||+|||.|+...+|
T Consensus 648 fvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 648 FVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred eeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEE
Confidence 99999999999999988877766653 4689999999999999999999887776
No 115
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=4.1e-25 Score=196.30 Aligned_cols=266 Identities=17% Similarity=0.256 Sum_probs=199.6
Q ss_pred ceEEecCccCcEEEEEEcCCCCEE-EEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEE-eCCCcEEEE
Q 017314 80 CKHKINAHEGGCASILFEYNSARL-ISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAA-SSSNNLYVW 157 (373)
Q Consensus 80 ~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-s~d~~i~iw 157 (373)
+...+..|. .+.++.|++++..+ ++++.|+.|++||..+++....+..+.. +..++|+|+++.++++ +.++.+++|
T Consensus 23 ~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~ 100 (300)
T TIGR03866 23 VTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVI 100 (300)
T ss_pred eEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEE
Confidence 344555554 36779999999976 5677899999999999887766655433 4678999999977655 568999999
Q ss_pred EcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCC-cEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEE-EeCC
Q 017314 158 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR-TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFS-GHID 235 (373)
Q Consensus 158 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s-g~~d 235 (373)
|+.+++.+..+..+ ..+.++.++| ++..+++++.++ .+.+||..++..............++|+|+|.+|+. +..+
T Consensus 101 d~~~~~~~~~~~~~-~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 178 (300)
T TIGR03866 101 DIETRKVLAEIPVG-VEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIG 178 (300)
T ss_pred ECCCCeEEeEeeCC-CCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCC
Confidence 99998877777533 3457788887 577788877765 567789988877665555556678999999998864 4569
Q ss_pred CcEEEEECCCCeeeEEEeccc------ccceEEEEEcCCCCEEEE-eeCCCeEEEEEccccceeeeeeecCCeeecCeee
Q 017314 236 GNLRLWDIQTGKLLSEVAAHS------LAAVTSISLSRSGNIILT-SGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSR 308 (373)
Q Consensus 236 g~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 308 (373)
+.|++||+.+++.+..+..+. ......+.|+|++++++. .+.++.+.+||+++.+....+.. ... ...
T Consensus 179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~----~~~ 253 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV-GQR----VWQ 253 (300)
T ss_pred CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe-CCC----cce
Confidence 999999999998777664321 012356889999998544 45567899999988776654432 211 224
Q ss_pred eEECCCCcEEEEE-eCCCcEEEEEccCceEEEEeccCCccEEEEEEcC
Q 017314 309 SCISPDESYVAAG-SADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 355 (373)
Q Consensus 309 ~~~s~~~~~l~sg-s~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~ 355 (373)
++++|+|++|+++ +.+|.|++||+.+++++..++....| +.++|+|
T Consensus 254 ~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~ 300 (300)
T TIGR03866 254 LAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLP-WGVVVRP 300 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccccc-ceeEeCC
Confidence 6799999999886 56899999999999999988765444 8998876
No 116
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.1e-27 Score=204.24 Aligned_cols=241 Identities=24% Similarity=0.348 Sum_probs=196.7
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcC-------
Q 017314 88 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN------- 160 (373)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~------- 160 (373)
.++|.+++-+|+|.+|+.|+..+.+++|.+.+|.++..+.+|-.+|+++.|+.||.+|++||.||.|.+|++.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred --CCeeEEEeecCCCcEEEEEEeeC-CCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCc
Q 017314 161 --SGRVRHTLTGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGN 237 (373)
Q Consensus 161 --~~~~~~~~~~h~~~v~~~~~~~~-~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~ 237 (373)
+-++.+.+..|+-+|+.+.+.+. ....++|+|.|+++|+||+..|..+.++.++..+.++++.|-+..++.|+.+|.
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcce
Confidence 23678899999999999887654 346799999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcE
Q 017314 238 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY 317 (373)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 317 (373)
|.+.++....... ..+..=.+++.+.. +..+.++.+. ..+.+++++-||.+
T Consensus 241 I~~~~~~~~~~~~-------~~v~~k~~~~~~t~--------------------~~~~~Gh~~~--~~ITcLais~Dgtl 291 (476)
T KOG0646|consen 241 IFQNLLFKLSGQS-------AGVNQKGRHEENTQ--------------------INVLVGHENE--SAITCLAISTDGTL 291 (476)
T ss_pred EEeeehhcCCccc-------ccccccccccccce--------------------eeeeccccCC--cceeEEEEecCccE
Confidence 9998875432110 11111111111111 1111222221 34456788999999
Q ss_pred EEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCC
Q 017314 318 VAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLG 357 (373)
Q Consensus 318 l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g 357 (373)
|++|+.||.|+|||+.+.++++++....++|+-+.+.|-.
T Consensus 292 LlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 292 LLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred EEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 9999999999999999999998887778899999987653
No 117
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=4.5e-29 Score=225.80 Aligned_cols=238 Identities=26% Similarity=0.465 Sum_probs=213.1
Q ss_pred EEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 017314 82 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 161 (373)
Q Consensus 82 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 161 (373)
+.+.+|...|.++..-..+..+++||.|..+-+|.+........+.+|..+|-++.|+++..+|++|+.+|+|++||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 35567888898888877888999999999999999887777778999999999999999999999999999999999999
Q ss_pred CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc-eeEEEEccCCCEEEEEeCCCcEEE
Q 017314 162 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRL 240 (373)
Q Consensus 162 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~sg~~dg~i~i 240 (373)
++.+++|.+|...+..+.|+| -+.+.++||.|..+++||++...|...+..|.. +.++.|+|+|+++++|+.|.+++|
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki 180 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKI 180 (825)
T ss_pred hhhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeee
Confidence 999999999999999999998 467889999999999999998888888877655 788999999999999999999999
Q ss_pred EECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEE
Q 017314 241 WDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAA 320 (373)
Q Consensus 241 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 320 (373)
||...|+.+.++..|. ..+.++.|+|..-++++||.|+++++||+++.+.+......... .....|+|++..+++
T Consensus 181 ~d~~agk~~~ef~~~e-~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~----v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 181 WDLTAGKLSKEFKSHE-GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDG----VRSLAFNPDGKIVLS 255 (825)
T ss_pred eccccccccccccccc-ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCC----ceeeeecCCceeeec
Confidence 9999999999999887 78999999999999999999999999999998887766544333 334679999999998
Q ss_pred EeCCC
Q 017314 321 GSADG 325 (373)
Q Consensus 321 gs~Dg 325 (373)
|-.+.
T Consensus 256 G~q~s 260 (825)
T KOG0267|consen 256 GEQIS 260 (825)
T ss_pred Cchhh
Confidence 87764
No 118
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.1e-28 Score=223.38 Aligned_cols=253 Identities=24% Similarity=0.425 Sum_probs=218.3
Q ss_pred EEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEe
Q 017314 102 RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVS 181 (373)
Q Consensus 102 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 181 (373)
.+..+..+-.+++||... +..|...|.++..-..++.+++|+.|..+.+|.+..-..+..|.+|..+|.++.|+
T Consensus 6 ~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~ 79 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFD 79 (825)
T ss_pred ccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecC
Confidence 345555666788898653 23466667777766677889999999999999988777778899999999999998
Q ss_pred eCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC-ceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccce
Q 017314 182 KISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAV 260 (373)
Q Consensus 182 ~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v 260 (373)
+ ...++++|+.+|+|++||+..+..++++.+|. ++.++.|+|-+.+.++|+.|+.+++||++...+.+.+.+|. ..+
T Consensus 80 ~-~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~-~vv 157 (825)
T KOG0267|consen 80 T-SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT-RVV 157 (825)
T ss_pred c-chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCc-cee
Confidence 7 56788999999999999999999888887774 58899999999999999999999999999888888888865 789
Q ss_pred EEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEE
Q 017314 261 TSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT 340 (373)
Q Consensus 261 ~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~ 340 (373)
..+.|+|+|+++++++.|.++++||+..++....|..|...+.. +.|+|..-++++||.|++|++||+++.+.+..
T Consensus 158 ~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~s----le~hp~e~Lla~Gs~d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 158 DVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQS----LEFHPLEVLLAPGSSDRTVRFWDLETFEVISS 233 (825)
T ss_pred EEEeecCCCceeeccCCcceeeeecccccccccccccccccccc----cccCchhhhhccCCCCceeeeeccceeEEeec
Confidence 99999999999999999999999999999888888766555433 44788889999999999999999999999988
Q ss_pred eccCCccEEEEEEcCCCCcEEEEeCC
Q 017314 341 LKEHTAPVLSCSWSGLGKPLASADKN 366 (373)
Q Consensus 341 l~~h~~~V~~~~~s~~g~~l~s~s~d 366 (373)
.+.....|.+.+|+|+|+.+++|..+
T Consensus 234 ~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 234 GKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred cCCccCCceeeeecCCceeeecCchh
Confidence 88888899999999999999888654
No 119
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5e-26 Score=187.23 Aligned_cols=261 Identities=18% Similarity=0.372 Sum_probs=189.3
Q ss_pred cCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC----ceeeeccccccceEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 017314 85 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG----SLSSTLYGCLGSVLDLAITH--DNRSVIAASSSNNLYVWD 158 (373)
Q Consensus 85 ~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd 158 (373)
.+|..-|+++.|.+.|.++||||.|++|+|||.+.. .+....+.|.+.|..+.|.+ -|+.+++++.|++++||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 578899999999999999999999999999996433 45667788999999999865 468899999999999997
Q ss_pred cCCC---------eeEEEeecCCCcEEEEEEeeCC-CCEEEEEeCCCcEEEEEccCCeee------eEEe--------ec
Q 017314 159 VNSG---------RVRHTLTGHTDKVCAVDVSKIS-SRHVVSAAYDRTLKVWDLHKGYCV------NTII--------FH 214 (373)
Q Consensus 159 ~~~~---------~~~~~~~~h~~~v~~~~~~~~~-~~~~~s~s~D~~i~vwd~~~~~~~------~~~~--------~~ 214 (373)
-... ....++......|+.+.|.|.. +-.+++++.||++|||+...-..+ ..+. .+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 5211 2345677778889999998854 345789999999999987543211 1222 23
Q ss_pred CceeEEEEccC---CCEEEEEeCC-----CcEEEEECCCC----eeeEEEecccccceEEEEEcCCC----CEEEEeeCC
Q 017314 215 SNCNALAFSMD---GQTIFSGHID-----GNLRLWDIQTG----KLLSEVAAHSLAAVTSISLSRSG----NIILTSGRD 278 (373)
Q Consensus 215 ~~~~~~~~~~~---g~~l~sg~~d-----g~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~----~~l~s~~~d 278 (373)
..+.|+.|+|. ..+|+.|+.+ +.+.||....+ ..+.++..|. .+|++|+|.|+- .+|++++.|
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~-dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT-DPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC-CcceeeeeccccCCceeeEEEeecC
Confidence 45678889874 4678888766 47888876443 3445566555 789999999853 367888888
Q ss_pred CeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCC
Q 017314 279 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK 358 (373)
Q Consensus 279 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~ 358 (373)
| |+||.++.... .+ .... ...|++ -+.+ .-+.+..+.+|.++|+.+.|+-.|.
T Consensus 249 g-v~I~~v~~~~s--~i--~~ee--------~~~~~~--------~~~l------~v~~vs~~~~H~~~VWrv~wNmtGt 301 (361)
T KOG2445|consen 249 G-VRIFKVKVARS--AI--EEEE--------VLAPDL--------MTDL------PVEKVSELDDHNGEVWRVRWNMTGT 301 (361)
T ss_pred c-EEEEEEeeccc--hh--hhhc--------ccCCCC--------cccc------ceEEeeeccCCCCceEEEEEeeeee
Confidence 8 88887653210 00 0000 011111 1111 1235667889999999999999999
Q ss_pred cEEEEeCCCeEEEcC
Q 017314 359 PLASADKNGVVCVWT 373 (373)
Q Consensus 359 ~l~s~s~dg~i~iW~ 373 (373)
.|+|.|.||+||+|.
T Consensus 302 iLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 302 ILSSTGDDGCVRLWK 316 (361)
T ss_pred EEeecCCCceeeehh
Confidence 999999999999994
No 120
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.7e-26 Score=188.40 Aligned_cols=238 Identities=18% Similarity=0.275 Sum_probs=180.6
Q ss_pred cccceEEEEEcC-CCCEEEEEeCCCcEEEEEcCC-CeeE-EEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCC
Q 017314 129 CLGSVLDLAITH-DNRSVIAASSSNNLYVWDVNS-GRVR-HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG 205 (373)
Q Consensus 129 ~~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~-~~~~-~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~ 205 (373)
....|.+++||| ....++++|.|++||+|+++. |... .....|.++|.+++|+. ++..+++|+.|+++++||+.++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccCC
Confidence 356789999999 455667999999999999986 3322 34456899999999987 6788999999999999999999
Q ss_pred eeeeEEeecCceeEEEEccCCC--EEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEE
Q 017314 206 YCVNTIIFHSNCNALAFSMDGQ--TIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL 283 (373)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~ 283 (373)
+....-.+...+..+.|-+... .|++||.|++|+.||++....+.++... ..+.++.. -..+++.+..++.|.+
T Consensus 105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP--eRvYa~Dv--~~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP--ERVYAADV--LYPMAVVATAERHIAV 180 (347)
T ss_pred CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc--ceeeehhc--cCceeEEEecCCcEEE
Confidence 6654444445688888877655 8999999999999999998888877665 35555543 3467888999999999
Q ss_pred EEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceE--EEEeccCC---------ccEEEEE
Q 017314 284 FDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI--VRTLKEHT---------APVLSCS 352 (373)
Q Consensus 284 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~--~~~l~~h~---------~~V~~~~ 352 (373)
|+++..... +.....+.......+++.+|....+.||-.|++.|..+..+.+ --+|+-|. ..|++++
T Consensus 181 ynL~n~~te--~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 181 YNLENPPTE--FKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEcCCCcch--hhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence 999754321 1222222222223344556777779999999999999987633 22344343 3588999
Q ss_pred EcCCCCcEEEEeCCCeEEEcC
Q 017314 353 WSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 353 ~s~~g~~l~s~s~dg~i~iW~ 373 (373)
|+|.-..|+|+|.||++.+||
T Consensus 259 FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred eecccceEEEecCCceEEEec
Confidence 999999999999999999996
No 121
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=3e-26 Score=206.71 Aligned_cols=331 Identities=23% Similarity=0.320 Sum_probs=244.6
Q ss_pred HHHHHHHHHHHhc----HHHHhcccccceeeccccCc-----ccccc---cc---ccc-cce----------EEecCccC
Q 017314 36 LYEDMIDRLKASG----LEKLAKQQVDGVVRRSEEGA-----EFFAE---ST---VPS-TCK----------HKINAHEG 89 (373)
Q Consensus 36 ~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~-----~~~~~---~~---~~~-~~~----------~~~~~h~~ 89 (373)
-++|+++.+.... .-.+++.+.|..+|.|.-.. ....+ .. .|. .+. ..+.||+.
T Consensus 189 GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD 268 (764)
T KOG1063|consen 189 GHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED 268 (764)
T ss_pred ccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc
Confidence 3567766655432 23477888899998763100 00000 00 111 111 12349999
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCc-------eeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 017314 90 GCASILFEYNSARLISGGQDKSIKLWDTNTGS-------LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG 162 (373)
Q Consensus 90 ~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 162 (373)
.|+++-|+|.+-.|+|+|.|.++.+|...+.. .+....|..+...+.-|+|+++.+++-+.-|..++|...+.
T Consensus 269 WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~ 348 (764)
T KOG1063|consen 269 WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK 348 (764)
T ss_pred ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc
Confidence 99999999999999999999999999876541 12334456677899999999999999999999999983332
Q ss_pred ---eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeee--eE----EeecCceeEEEEccCCCEEEEEe
Q 017314 163 ---RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV--NT----IIFHSNCNALAFSMDGQTIFSGH 233 (373)
Q Consensus 163 ---~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~--~~----~~~~~~~~~~~~~~~g~~l~sg~ 233 (373)
.+...+.||.+.|..++|.| .+.+++|.|.|.|-|++-.- |+.. +. ..+....+|+++-+....+++|.
T Consensus 349 ~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgA 426 (764)
T KOG1063|consen 349 TFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGA 426 (764)
T ss_pred cceeeccccccccccceeeeecC-CCCEEEEeccccceeeeccc-ccccceeeecccccccccceeeehccCCceeeecc
Confidence 34557789999999999998 68899999999999998543 2111 11 12234578888887666778888
Q ss_pred CCCcEEEEECCC----------C----------------------ee---------------------------------
Q 017314 234 IDGNLRLWDIQT----------G----------------------KL--------------------------------- 248 (373)
Q Consensus 234 ~dg~i~iwd~~~----------~----------------------~~--------------------------------- 248 (373)
....+|+|+... + +.
T Consensus 427 dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~E 506 (764)
T KOG1063|consen 427 DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTE 506 (764)
T ss_pred cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChH
Confidence 888899997541 0 00
Q ss_pred -----------eEEEecccccceEEEEEcCCCCEEEEeeCCC-----eEEEEEccccceeeeeeecCCeeecCeeeeEEC
Q 017314 249 -----------LSEVAAHSLAAVTSISLSRSGNIILTSGRDN-----LHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS 312 (373)
Q Consensus 249 -----------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s 312 (373)
++++.+| ...|++++.+|+++++|+++... .|++|+..+....+.+..|.-.+ .++.||
T Consensus 507 dqLq~~tLwPEv~KLYGH-GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTV----T~l~FS 581 (764)
T KOG1063|consen 507 DQLQQNTLWPEVHKLYGH-GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTV----TRLAFS 581 (764)
T ss_pred HHHHHhccchhhHHhccC-ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEE----EEEEEC
Confidence 0011123 25799999999999999987654 58899999888777777776554 358899
Q ss_pred CCCcEEEEEeCCCcEEEEEccCce----EEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 313 PDESYVAAGSADGSVYIWSISKAD----IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 313 ~~~~~l~sgs~Dg~i~iwd~~~~~----~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
|||+||++.|.|+++.+|...... .....+.|+.-|++++|+|++.++||+|.|++|++|.
T Consensus 582 pdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 582 PDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred CCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 999999999999999999875432 2344778999999999999999999999999999994
No 122
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.3e-26 Score=199.95 Aligned_cols=239 Identities=21% Similarity=0.330 Sum_probs=191.4
Q ss_pred cCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCee
Q 017314 85 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV 164 (373)
Q Consensus 85 ~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 164 (373)
++|...+.+++.++||++|++|+.|..|.||+..+.+.++.+.+|.+.|.+++|-.....+++++.|++|++|+++....
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 48999999999999999999999999999999999999999999999999999998888999999999999999998888
Q ss_pred EEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECC
Q 017314 165 RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ 244 (373)
Q Consensus 165 ~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~ 244 (373)
+.++-+|.+.|.+++... ..+.+-.|+.|+++++|++.....+-.......+.|++|- +...+++|+.||.|.+|++.
T Consensus 279 vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLL 356 (479)
T ss_pred HHHHhCCccceeeechhc-ccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeec
Confidence 899999999999988654 3455556679999999999654333222223357777775 55678999999999999998
Q ss_pred CCeeeEEEeccc-----------ccceEEEEEcCCCCEEEEeeCCCeEEEEEcccc----ceeeeeeecCCeeecCeeee
Q 017314 245 TGKLLSEVAAHS-----------LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL----EVCGSLRATGNRVASNWSRS 309 (373)
Q Consensus 245 ~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~ 309 (373)
+.+++......+ ...|++++..|...++++|+.++.+++|-+..+ .++..+... .-++.+
T Consensus 357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~-----GfVNsl 431 (479)
T KOG0299|consen 357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV-----GFVNSL 431 (479)
T ss_pred ccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc-----cEEEEE
Confidence 888776553321 126899999999999999999999999997654 333333322 223457
Q ss_pred EECCCCcEEEEE-eCCCcEEEE
Q 017314 310 CISPDESYVAAG-SADGSVYIW 330 (373)
Q Consensus 310 ~~s~~~~~l~sg-s~Dg~i~iw 330 (373)
+|+++|++|++| +..-.+=-|
T Consensus 432 ~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 432 AFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred EEccCCCEEEEeccccccccee
Confidence 889999977666 444334334
No 123
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.1e-27 Score=214.70 Aligned_cols=277 Identities=22% Similarity=0.334 Sum_probs=212.4
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCc----eeeecccc---ccceEEEEEc-CCCCEEEEEeCCCcEEEEEcC
Q 017314 89 GGCASILFEYNSARLISGGQDKSIKLWDTNTGS----LSSTLYGC---LGSVLDLAIT-HDNRSVIAASSSNNLYVWDVN 160 (373)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~---~~~v~~~~~~-~~~~~l~s~s~d~~i~iwd~~ 160 (373)
+...++...++-..++.+|. ..++|+.++... +...+.+- .....+|.|. .+.++|++++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 34556677788888888885 477888765432 11111111 1234455564 345789999999999999998
Q ss_pred C---CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc-eeEEEEcc-CCCEEEEEeCC
Q 017314 161 S---GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSM-DGQTIFSGHID 235 (373)
Q Consensus 161 ~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~-~g~~l~sg~~d 235 (373)
. .+.+..|..|+..+.+++|++...++++|||.||+|++||++......++...++ +..+.|+| .+.+++++...
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence 7 5677789999999999999999999999999999999999998887777766554 78899999 57889999999
Q ss_pred CcEEEEECCCC-eeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCC
Q 017314 236 GNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD 314 (373)
Q Consensus 236 g~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 314 (373)
|.+++||+|.. ++...+..|. ++|.++.|+|++.+||+||+|++++|||+...+.......+. ..+..++.+-|.
T Consensus 199 G~lqlWDlRqp~r~~~k~~AH~-GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT---iapv~rVkWRP~ 274 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRCEKKLTAHN-GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT---IAPVGRVKWRPA 274 (839)
T ss_pred ceEEEeeccCchhHHHHhhccc-CceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee---cceeeeeeeccC
Confidence 99999999865 4556677776 899999999999999999999999999998644322211111 123345667776
Q ss_pred Cc-EEEEEe--CCCcEEEEEccCce-EEEEeccCCccEEEEEEcC-CCCcEEEEeCCCeEE
Q 017314 315 ES-YVAAGS--ADGSVYIWSISKAD-IVRTLKEHTAPVLSCSWSG-LGKPLASADKNGVVC 370 (373)
Q Consensus 315 ~~-~l~sgs--~Dg~i~iwd~~~~~-~~~~l~~h~~~V~~~~~s~-~g~~l~s~s~dg~i~ 370 (373)
.+ .||+++ .|-.|+|||+.... +..++..|...|+.++|.. |-..|.++|.||+|.
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred ccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 55 466665 47899999998754 4678999999999999965 456889999999863
No 124
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.5e-26 Score=186.74 Aligned_cols=259 Identities=22% Similarity=0.376 Sum_probs=207.7
Q ss_pred CEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEE
Q 017314 101 ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 180 (373)
Q Consensus 101 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 180 (373)
..+++.-.|++++. .++..+.||...|+.++.......+.+++.|.+.+||.++++.++.++.||.+.|.++.|
T Consensus 125 srivssFk~~t~~~------~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 125 SRIVSSFKDGTVKF------RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKF 198 (481)
T ss_pred chheeeecCCceeE------eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEe
Confidence 45666666776442 356778899999999998877778999999999999999999999999999999999999
Q ss_pred eeCCCCEEEEEeCCCcEEEEEc------cCC----------------------------------eeeeEEeecCc-eeE
Q 017314 181 SKISSRHVVSAAYDRTLKVWDL------HKG----------------------------------YCVNTIIFHSN-CNA 219 (373)
Q Consensus 181 ~~~~~~~~~s~s~D~~i~vwd~------~~~----------------------------------~~~~~~~~~~~-~~~ 219 (373)
++ ...+++++|.|++-.||.. .+. .++..+..|.. +.+
T Consensus 199 h~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 199 HN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred cc-ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 98 5778899999999999962 110 01111222222 455
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEcccc-ceeeeeeec
Q 017314 220 LAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL-EVCGSLRAT 298 (373)
Q Consensus 220 ~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~-~~~~~~~~~ 298 (373)
..|-..|+.+++++.|.+-.+||+.++.++..+.+|. .+.+-++-+|..+++++++.|.+.++||++.. ..+..|++|
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd-~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGH 356 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHD-SELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGH 356 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCceeccccCcc-hhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccc
Confidence 5677788999999999999999999999999999997 78999999999999999999999999999843 234556666
Q ss_pred CCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCce-EEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 299 GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD-IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 299 ~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~-~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
...+.+ ..|. .+..+++||+|.+|+|||+.+.. ++.+++ ..++++.++.+-.+..||.--.+..||+|+
T Consensus 357 tdtVTS----~vF~-~dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 357 TDTVTS----VVFN-TDDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred ccceeE----EEEe-cCCceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEe
Confidence 665543 3343 45678999999999999998754 466665 456899999998777888888888999885
No 125
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=1.1e-26 Score=202.37 Aligned_cols=237 Identities=22% Similarity=0.386 Sum_probs=198.8
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCce--eeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeE
Q 017314 88 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL--SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR 165 (373)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 165 (373)
..-+.++.+.+||..|++||.-.++.|||+..... ...+....-...+++.+||.+..+++..||.|.|||+.+...+
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence 45688999999999999999999999999975432 2333322334567899999999999999999999999999999
Q ss_pred EEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCC
Q 017314 166 HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT 245 (373)
Q Consensus 166 ~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~ 245 (373)
+.|+||++.+.|+++++ ++..|.||+-|.+||-||+++++.+....+.+.+-++.++|++.+|+.|-.++.+.+.....
T Consensus 545 rqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk 623 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK 623 (705)
T ss_pred ecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCC
Confidence 99999999999999987 67789999999999999999999888888888999999999999999999999999987755
Q ss_pred CeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCC
Q 017314 246 GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG 325 (373)
Q Consensus 246 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg 325 (373)
.+ ...+..|. ..|.++.|.+.|+++++.|.|+.+..|....+..+....... .+..+.+|.|.+||++||.|.
T Consensus 624 p~-kyqlhlhe-ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~S-----sVlsCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 624 PE-KYQLHLHE-SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS-----SVLSCDISFDDKYIVTGSGDK 696 (705)
T ss_pred cc-ceeecccc-cEEEEEEecccCceeeecCchhhhhhccCccccceeeccccC-----cceeeeeccCceEEEecCCCc
Confidence 43 23344454 789999999999999999999999999887665444433222 223456899999999999999
Q ss_pred cEEEEEc
Q 017314 326 SVYIWSI 332 (373)
Q Consensus 326 ~i~iwd~ 332 (373)
...||.+
T Consensus 697 kATVYeV 703 (705)
T KOG0639|consen 697 KATVYEV 703 (705)
T ss_pred ceEEEEE
Confidence 8888865
No 126
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=3.1e-25 Score=204.06 Aligned_cols=282 Identities=21% Similarity=0.343 Sum_probs=232.2
Q ss_pred EecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC----ceeeeccccccceEEEEEc-CCCCEEEEEeCCCcEEEE
Q 017314 83 KINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG----SLSSTLYGCLGSVLDLAIT-HDNRSVIAASSSNNLYVW 157 (373)
Q Consensus 83 ~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~-~~~~~l~s~s~d~~i~iw 157 (373)
...+|.++|....|-+....|+|++.|.++++|=.+++ +.+..-.||..|..++.|- .++..+++++.|++.+.+
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~f 362 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSF 362 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhh
Confidence 44589999999999999999999999999999966544 3345556888888888876 566778888888877766
Q ss_pred EcC-----------------------------------------------------------------CCee-EEEeecC
Q 017314 158 DVN-----------------------------------------------------------------SGRV-RHTLTGH 171 (373)
Q Consensus 158 d~~-----------------------------------------------------------------~~~~-~~~~~~h 171 (373)
++. +... .+++. +
T Consensus 363 s~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~-~ 441 (910)
T KOG1539|consen 363 SVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLD-P 441 (910)
T ss_pred hhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEec-C
Confidence 642 1111 01111 2
Q ss_pred C------CcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEE----eecCceeEEEEccCCCEEEEEeCCCcEEEE
Q 017314 172 T------DKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI----IFHSNCNALAFSMDGQTIFSGHIDGNLRLW 241 (373)
Q Consensus 172 ~------~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~~g~~l~sg~~dg~i~iw 241 (373)
. ..+++++.++ .+++.+-|+..|+|-++++++|.....+ .+...+..++...-++.+++++.+|.+++|
T Consensus 442 ~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw 520 (910)
T KOG1539|consen 442 KRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFW 520 (910)
T ss_pred ccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEE
Confidence 2 4567777776 5788899999999999999999877776 334568999998888999999999999999
Q ss_pred ECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEE
Q 017314 242 DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG 321 (373)
Q Consensus 242 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg 321 (373)
|..+..++..+... ..++.+.++.....++.+..|-.|.++|..+.+++..+.+|++.+. ..+|||||++|+++
T Consensus 521 ~f~~k~l~~~l~l~--~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nrit----d~~FS~DgrWlisa 594 (910)
T KOG1539|consen 521 DFKKKVLKKSLRLG--SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRIT----DMTFSPDGRWLISA 594 (910)
T ss_pred ecCCcceeeeeccC--CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccccee----eeEeCCCCcEEEEe
Confidence 99998877777655 4788899999999999999999999999999999999999988875 47899999999999
Q ss_pred eCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCC-CeEEEcC
Q 017314 322 SADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN-GVVCVWT 373 (373)
Q Consensus 322 s~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~d-g~i~iW~ 373 (373)
+.|++|++||+.++.++..+. -..+.+++.|||+|.+|||+..| .-|++|.
T Consensus 595 smD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 595 SMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred ecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 999999999999999987764 34678999999999999999998 6789983
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.3e-25 Score=205.93 Aligned_cols=243 Identities=19% Similarity=0.302 Sum_probs=203.1
Q ss_pred cccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCC
Q 017314 127 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG-RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG 205 (373)
Q Consensus 127 ~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~ 205 (373)
+.|....+.++|.|+|..|++++.|+.|++|+.... +.-.++..+...|.+++. ..+++++|+.+++|.+|.+.++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~---~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC---YSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee---cccceEEeeccceEEEeeCCCC
Confidence 468888999999999999999999999999997655 333344447788888765 3558999999999999999877
Q ss_pred eeeeE-EeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEE
Q 017314 206 YCVNT-IIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF 284 (373)
Q Consensus 206 ~~~~~-~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~ 284 (373)
..-.. ..+..++++++++.+|.+++.||.|-.|++.++.+......+.+|. ++|.++.|+|.+++||+.+.||.+++|
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~-apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD-APVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC-CceeeeeEcCCCCEEEEEecCceEEEE
Confidence 54311 2344567899999999999999999999999999999889999987 899999999999999999999999999
Q ss_pred EccccceeeeeeecCC----eeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEecc--CCccEEEEEEcCCCC
Q 017314 285 DIRSLEVCGSLRATGN----RVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE--HTAPVLSCSWSGLGK 358 (373)
Q Consensus 285 d~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~--h~~~V~~~~~s~~g~ 358 (373)
|+........+..... .......+.+++|+|..|+.-+.|+.|++|+...++....|.. |...+..+.|||.|+
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK 245 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCc
Confidence 9998776655543221 1133455678999988888888999999999999998877764 444589999999999
Q ss_pred cEEEEeCCCeEEEcC
Q 017314 359 PLASADKNGVVCVWT 373 (373)
Q Consensus 359 ~l~s~s~dg~i~iW~ 373 (373)
|||+++.||.|.||+
T Consensus 246 YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 246 YIAASTLDGQILVWN 260 (933)
T ss_pred EEeeeccCCcEEEEe
Confidence 999999999999996
No 128
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=3.3e-25 Score=182.57 Aligned_cols=235 Identities=16% Similarity=0.299 Sum_probs=183.2
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeee
Q 017314 130 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN 209 (373)
Q Consensus 130 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~ 209 (373)
...|.++.|+|.+..|+.+++||++++||+........+. |..++.+++|.+ ...+++|+.||.|+.+|+.++....
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC--CceEEEeccCceEEEEEecCCccee
Confidence 4578999999999999999999999999998886655554 889999998875 5679999999999999999887655
Q ss_pred EEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEcccc
Q 017314 210 TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL 289 (373)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~ 289 (373)
...+...+.++.+.+-...+++|++|++|++||.+.......+... ..|.++.. .++.|+.|+.|..+.+||+|+.
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~--kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG--KKVYCMDV--SGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC--ceEEEEec--cCCEEEEeecCceEEEEEcccc
Confidence 4445566899999998889999999999999999975544444332 46776665 4778999999999999999987
Q ss_pred ceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCc----eEEEEeccC---------CccEEEEEEcCC
Q 017314 290 EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA----DIVRTLKEH---------TAPVLSCSWSGL 356 (373)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~----~~~~~l~~h---------~~~V~~~~~s~~ 356 (373)
+.....+... .......+++-|.+.=++++|-||+|.+=.+... +.-..|+-| --||++++|+|-
T Consensus 166 ~~~~q~reS~--lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 166 DEPFQRRESS--LKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred cchhhhcccc--ceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 6543222111 1112233455678888889999999998777654 222234434 238999999999
Q ss_pred CCcEEEEeCCCeEEEcC
Q 017314 357 GKPLASADKNGVVCVWT 373 (373)
Q Consensus 357 g~~l~s~s~dg~i~iW~ 373 (373)
-+.|||||.||.|.+|+
T Consensus 244 ~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWD 260 (323)
T ss_pred cceEEecCCCceEEEcc
Confidence 99999999999999996
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.3e-25 Score=192.72 Aligned_cols=261 Identities=23% Similarity=0.365 Sum_probs=201.6
Q ss_pred EeeCC-CcEEEEeCCCCceeeecccc-ccceEEEEEcCCCCEEEEEeCC-CcEEEEEcCCCeeEEEeecCCCcEEEEEEe
Q 017314 105 SGGQD-KSIKLWDTNTGSLSSTLYGC-LGSVLDLAITHDNRSVIAASSS-NNLYVWDVNSGRVRHTLTGHTDKVCAVDVS 181 (373)
Q Consensus 105 s~s~D-~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~s~d-~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 181 (373)
+.+.| .++.+||+.+|....++++. ...-.++..- .+.+++++... ..+.+|.+..........--.++|.++.-+
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 33445 45999999999888887765 2222222221 23566666654 479999987654433222234678888776
Q ss_pred eCCCCEEEEEeCCCcEEEEEccCCeeeeEEeec-CceeEEEEccCCCEEEEEeCCCcEEEEECC---------CCeeeEE
Q 017314 182 KISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQ---------TGKLLSE 251 (373)
Q Consensus 182 ~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~---------~~~~~~~ 251 (373)
| .+.+++.|.-.|.|.+|.+.+|..+..+..| ..++++.|+-||.+|+||+.||.|.+|++- +-+.++.
T Consensus 91 n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 91 N-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred C-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 6 6777777779999999999999988877656 459999999999999999999999999863 2345666
Q ss_pred EecccccceEEEEEcCC--CCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEE
Q 017314 252 VAAHSLAAVTSISLSRS--GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYI 329 (373)
Q Consensus 252 ~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~i 329 (373)
+..|. -+|+++...+. ...|+++|.|+++++||+..+....++.... ....++++|-++.+..|+.+|.|.+
T Consensus 170 f~~Ht-lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~-----si~av~lDpae~~~yiGt~~G~I~~ 243 (476)
T KOG0646|consen 170 FSDHT-LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS-----SIKAVALDPAERVVYIGTEEGKIFQ 243 (476)
T ss_pred eccCc-ceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC-----cceeEEEcccccEEEecCCcceEEe
Confidence 77776 68999988775 4589999999999999999887766654432 2334678999999999999999999
Q ss_pred EEccCc----------------eEEEEeccCCc--cEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 330 WSISKA----------------DIVRTLKEHTA--PVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 330 wd~~~~----------------~~~~~l~~h~~--~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
.++... ..+..+.||.+ +|+|++.|-||..|++|+.||.++||+
T Consensus 244 ~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 244 NLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred eehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 887532 34556789988 999999999999999999999999996
No 130
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1e-23 Score=184.19 Aligned_cols=273 Identities=19% Similarity=0.301 Sum_probs=208.0
Q ss_pred ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeee---cccc-ccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 017314 87 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST---LYGC-LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG 162 (373)
Q Consensus 87 h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~---~~~~-~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 162 (373)
-+..|....|+|.+..|+.....+.+..|+.+.+...+. +.++ ..-|.+++|.++|. +++|..+|+|.||+..+.
T Consensus 199 sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~ 277 (626)
T KOG2106|consen 199 SNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTN 277 (626)
T ss_pred ccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCc
Confidence 345678889999766555445568999999998866433 3332 35799999999886 789999999999999888
Q ss_pred eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCe-----------eeeEEe-------------------
Q 017314 163 RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-----------CVNTII------------------- 212 (373)
Q Consensus 163 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~-----------~~~~~~------------------- 212 (373)
+..+....|.+.|.+++... ...|+||+.|+.|..||-.-.+ .++++.
T Consensus 278 ~~~k~~~aH~ggv~~L~~lr--~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt 355 (626)
T KOG2106|consen 278 RISKQVHAHDGGVFSLCMLR--DGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGT 355 (626)
T ss_pred eEEeEeeecCCceEEEEEec--CccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEee
Confidence 87777779999999998764 4468889999999999831000 011110
Q ss_pred ----------ec-CceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeE
Q 017314 213 ----------FH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLH 281 (373)
Q Consensus 213 ----------~~-~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i 281 (373)
.| .....++.+|+...+++++.|+.+++|+ ..+++.+.... .+..++.|+|.| .++.|...+..
T Consensus 356 ~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~--d~~~~~~fhpsg-~va~Gt~~G~w 430 (626)
T KOG2106|consen 356 LENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE--DPAECADFHPSG-VVAVGTATGRW 430 (626)
T ss_pred ecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec--CceeEeeccCcc-eEEEeeccceE
Confidence 01 1234578899999999999999999999 44555444333 578899999999 99999999999
Q ss_pred EEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCc-eEEEEecc-CCccEEEEEEcCCCCc
Q 017314 282 NLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA-DIVRTLKE-HTAPVLSCSWSGLGKP 359 (373)
Q Consensus 282 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~-~~~~~l~~-h~~~V~~~~~s~~g~~ 359 (373)
.+.|..+...+..-.. ..+.+.+.|+|+|.+||.||.|+.|+||.+... ........ |..+|+.+.||+|+++
T Consensus 431 ~V~d~e~~~lv~~~~d-----~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~ 505 (626)
T KOG2106|consen 431 FVLDTETQDLVTIHTD-----NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQF 505 (626)
T ss_pred EEEecccceeEEEEec-----CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCce
Confidence 9999987544332222 234456789999999999999999999999754 44443332 4489999999999999
Q ss_pred EEEEeCCCeEEEc
Q 017314 360 LASADKNGVVCVW 372 (373)
Q Consensus 360 l~s~s~dg~i~iW 372 (373)
|.+-|.|-.|-.|
T Consensus 506 ~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 506 LVSNSGDYEILYW 518 (626)
T ss_pred EEeccCceEEEEE
Confidence 9999999999888
No 131
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=4.1e-24 Score=186.58 Aligned_cols=283 Identities=19% Similarity=0.275 Sum_probs=218.3
Q ss_pred cCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCce----------------------------------------ee
Q 017314 85 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL----------------------------------------SS 124 (373)
Q Consensus 85 ~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~----------------------------------------~~ 124 (373)
.+|.++|.+++.-.+|.+ +||+.|+.|..||-+-.+. ..
T Consensus 284 ~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~ 362 (626)
T KOG2106|consen 284 HAHDGGVFSLCMLRDGTL-LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL 362 (626)
T ss_pred eecCCceEEEEEecCccE-eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE
Confidence 399999999999998864 5599999999998321100 01
Q ss_pred eccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccC
Q 017314 125 TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 204 (373)
Q Consensus 125 ~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~ 204 (373)
...+|......++..|+.+.+++++.|+++++|+ ..+++.+.. -.+++.+++|+|. + .++.|...|...+.|.++
T Consensus 363 ~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhps-g-~va~Gt~~G~w~V~d~e~ 437 (626)
T KOG2106|consen 363 TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPS-G-VVAVGTATGRWFVLDTET 437 (626)
T ss_pred EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCc-c-eEEEeeccceEEEEeccc
Confidence 2345677788899999999999999999999999 445544433 4578889999984 4 899999999999999998
Q ss_pred CeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECC-CCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEE
Q 017314 205 GYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ-TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL 283 (373)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~ 283 (373)
...+........++++.|+|+|.+|+.|+.|+.|+||-+. ++........++...|+.+.|++|+++|.+.+-|-.+..
T Consensus 438 ~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLy 517 (626)
T KOG2106|consen 438 QDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILY 517 (626)
T ss_pred ceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEE
Confidence 7666555556678999999999999999999999999885 455555555555589999999999999999999999999
Q ss_pred EEccccceeeee--------------eecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccC---ceEEEEeccCCc
Q 017314 284 FDIRSLEVCGSL--------------RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK---ADIVRTLKEHTA 346 (373)
Q Consensus 284 ~d~~~~~~~~~~--------------~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~---~~~~~~l~~h~~ 346 (373)
|........... ...+.......+.++-+.+..++|+|-+.|.|++|...= ..+.+.+.+|.+
T Consensus 518 W~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~ 597 (626)
T KOG2106|consen 518 WKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSS 597 (626)
T ss_pred EccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccc
Confidence 954322211111 011111111223344567788999999999999998753 344677889999
Q ss_pred cEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 347 PVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 347 ~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
-|++++|.-+.+.|.+.+.|-.|..|+
T Consensus 598 ~vt~V~Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 598 HVTNVAFLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred eeEEEEEeeCCceEEecCCCceEEEEE
Confidence 999999999888888888999999995
No 132
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=9e-25 Score=188.61 Aligned_cols=288 Identities=18% Similarity=0.255 Sum_probs=211.0
Q ss_pred EecCccCcEEEEEEcCCCC--EEEEeeCCCcEEEEeCCCC----ceeeeccccccceEEEEEcCCC-CEEEEEeCCCcEE
Q 017314 83 KINAHEGGCASILFEYNSA--RLISGGQDKSIKLWDTNTG----SLSSTLYGCLGSVLDLAITHDN-RSVIAASSSNNLY 155 (373)
Q Consensus 83 ~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~ 155 (373)
..+.|.+.|++++|+|..+ .+++|..-|.|-+||+.+. ..+..+..|.++|.++.|+|.+ ..+++.|+||+|+
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence 3456889999999999765 7788888999999999532 2245677899999999999977 5799999999999
Q ss_pred EEEcCCCeeEEEeec--CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCee-eeEEeec-CceeEEEEccCC-CEEE
Q 017314 156 VWDVNSGRVRHTLTG--HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC-VNTIIFH-SNCNALAFSMDG-QTIF 230 (373)
Q Consensus 156 iwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~-~~~~~~~-~~~~~~~~~~~g-~~l~ 230 (373)
+-|++++.....+.. -......+.++. +...++.+..=|...+||.+++.. ...+..| ..++.++++|-. .+++
T Consensus 261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 999998754433333 333455666765 444566666666999999987643 2222223 468999999954 5678
Q ss_pred EEeCCCcEEEEECCCCeee----EEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEcc----ccceeeeeeecCC--
Q 017314 231 SGHIDGNLRLWDIQTGKLL----SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR----SLEVCGSLRATGN-- 300 (373)
Q Consensus 231 sg~~dg~i~iwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~----~~~~~~~~~~~~~-- 300 (373)
|++.|++.+|||++....- -....| ...|.+..|+|++..|++.+.|+.|++||.. ..+....+.....
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~lst~~H-rrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~ 418 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFLSTLPH-RRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTG 418 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcceecccc-cceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCccc
Confidence 9999999999999864322 222334 3689999999999999999999999999983 3344444432211
Q ss_pred eeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCc-cEEEE-EEcCCCCcE-EEEeCCCeEEEcC
Q 017314 301 RVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTA-PVLSC-SWSGLGKPL-ASADKNGVVCVWT 373 (373)
Q Consensus 301 ~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~-~V~~~-~~s~~g~~l-~s~s~dg~i~iW~ 373 (373)
+.... -...+.|+..+|++|-.-..|-|+|-..++.+..+.+... .|.++ .|+|-+..+ +.++..|.|.||.
T Consensus 419 RwlT~-fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 419 RWLTP-FKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred ccccc-hhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 11111 1245789999999999999999999999998888766543 55554 699998845 4455678999984
No 133
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=2.4e-25 Score=194.77 Aligned_cols=246 Identities=17% Similarity=0.238 Sum_probs=180.3
Q ss_pred eeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe----eEEEe-ecCCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 017314 124 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR----VRHTL-TGHTDKVCAVDVSKISSRHVVSAAYDRTLK 198 (373)
Q Consensus 124 ~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~----~~~~~-~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~ 198 (373)
-.+.+|+..|.++++.|.|.+|++||.|.+|++||+.... ..+.+ ......|.++.|++ .+..|+..+.....+
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGSAQAK 239 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecCccee
Confidence 4577889999999999999999999999999999987532 11122 33456788899988 567787778888999
Q ss_pred EEEccCCeeeeEEe------------ec-CceeEEEEccCCC-EEEEEeCCCcEEEEECCCCeee-EEEe----cccccc
Q 017314 199 VWDLHKGYCVNTII------------FH-SNCNALAFSMDGQ-TIFSGHIDGNLRLWDIQTGKLL-SEVA----AHSLAA 259 (373)
Q Consensus 199 vwd~~~~~~~~~~~------------~~-~~~~~~~~~~~g~-~l~sg~~dg~i~iwd~~~~~~~-~~~~----~~~~~~ 259 (373)
|+|-.......... .| ..+++.+|+|+.+ .+++++.||++||||+...+.. +.+. ......
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 99965333222221 11 2468899999654 5789999999999999765322 2221 122357
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeee--e-ecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCc-
Q 017314 260 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL--R-ATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA- 335 (373)
Q Consensus 260 v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~--~-~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~- 335 (373)
+++++|+|+++.||+|..||.|.+|+.+...+.-.+ . .|.. ...+..+.||+||++|+|-+.|+++++||+...
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~--g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP--GQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCC--CCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 899999999999999999999999998654432222 1 2222 124456789999999999999999999999874
Q ss_pred eEEEEeccC--CccEEEEEEcCCCCcEEEEeCC------CeEEEc
Q 017314 336 DIVRTLKEH--TAPVLSCSWSGLGKPLASADKN------GVVCVW 372 (373)
Q Consensus 336 ~~~~~l~~h--~~~V~~~~~s~~g~~l~s~s~d------g~i~iW 372 (373)
+++....+- .-+-+.|+|||+.+.|++|..- |++.+|
T Consensus 398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~ 442 (641)
T KOG0772|consen 398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFF 442 (641)
T ss_pred cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEE
Confidence 456555543 2356899999999999998642 555554
No 134
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=6.4e-25 Score=189.53 Aligned_cols=207 Identities=22% Similarity=0.354 Sum_probs=171.0
Q ss_pred ceEEecCccCcEEEEEEcCC-CCEEEEeeCCCcEEEEeCCCCc-------eeeeccccccceEEEEEcCCCC-EEEEEeC
Q 017314 80 CKHKINAHEGGCASILFEYN-SARLISGGQDKSIKLWDTNTGS-------LSSTLYGCLGSVLDLAITHDNR-SVIAASS 150 (373)
Q Consensus 80 ~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~ 150 (373)
...+|.+|.+.-++++|++. ...|++|+.|++|.+||+.... ....+.+|...|.+++|++-.. .+.+++.
T Consensus 169 Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d 248 (422)
T KOG0264|consen 169 PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD 248 (422)
T ss_pred CceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecC
Confidence 34578999998899999975 4589999999999999997543 2456789999999999998664 6778899
Q ss_pred CCcEEEEEcC--CCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCC-eeeeEEeecC-ceeEEEEccCC
Q 017314 151 SNNLYVWDVN--SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFHS-NCNALAFSMDG 226 (373)
Q Consensus 151 d~~i~iwd~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~-~~~~~~~~~~-~~~~~~~~~~g 226 (373)
|+.+.|||++ +.++.+...+|+.+|.|++|+|.+...|+|||.|++|++||+++- .++.++..|. .+..+.|+|+.
T Consensus 249 d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~ 328 (422)
T KOG0264|consen 249 DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN 328 (422)
T ss_pred CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC
Confidence 9999999999 667788889999999999999999999999999999999999864 4566776665 58999999964
Q ss_pred -CEEEEEeCCCcEEEEECCCCe--------------eeEEEecccccceEEEEEcCCCC-EEEEeeCCCeEEEEEcc
Q 017314 227 -QTIFSGHIDGNLRLWDIQTGK--------------LLSEVAAHSLAAVTSISLSRSGN-IILTSGRDNLHNLFDIR 287 (373)
Q Consensus 227 -~~l~sg~~dg~i~iwd~~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~d~~ 287 (373)
..|++++.|+.+.+||+..-. ++..-.+| ...|..++|+|+.. .+++.+.|+.+.||.+.
T Consensus 329 etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH-~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 329 ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGH-TAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCc-ccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 567889999999999986421 12222344 47899999999887 46778899999999875
No 135
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.4e-25 Score=204.81 Aligned_cols=240 Identities=18% Similarity=0.290 Sum_probs=194.0
Q ss_pred EEEEEcC-CCCEEEEeeCCCcEEEEeCCC---CceeeeccccccceEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCeeEE
Q 017314 92 ASILFEY-NSARLISGGQDKSIKLWDTNT---GSLSSTLYGCLGSVLDLAITHDN-RSVIAASSSNNLYVWDVNSGRVRH 166 (373)
Q Consensus 92 ~~~~~~~-~~~~l~s~s~D~~v~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~ 166 (373)
..+.|.. +.++|||++..|.|.+||+.. .+.+..+..|.-.++++.|++-. .+|++||.|++|++||++..+...
T Consensus 91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~ 170 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS 170 (839)
T ss_pred hhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc
Confidence 3455653 568999999999999999987 56677889999999999998755 678999999999999999999899
Q ss_pred EeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCC-eeeeEEeec-CceeEEEEccCCCEEEEEeCCCcEEEEECC
Q 017314 167 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQ 244 (373)
Q Consensus 167 ~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~-~~~~~~~~~-~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~ 244 (373)
++.+..+.|..|.|+|..++.++++...|.+.+||++.. ++...+..| ..+.++.|+|++.+||||+.|++|+|||+.
T Consensus 171 t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 171 TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT 250 (839)
T ss_pred cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEecc
Confidence 999999999999999999999999999999999999854 445555555 458999999999999999999999999998
Q ss_pred CCeeeEEEecccccceEEEEEcCCCCE-EEEee--CCCeEEEEEcccc-ceeeeeeecCCeeecCeeeeEE-CCCCcEEE
Q 017314 245 TGKLLSEVAAHSLAAVTSISLSRSGNI-ILTSG--RDNLHNLFDIRSL-EVCGSLRATGNRVASNWSRSCI-SPDESYVA 319 (373)
Q Consensus 245 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~--~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~ 319 (373)
+++.-.....+...++..+.|-|...+ |++++ .|..|++||++.. -+...+..|...+.. +++ +.|-..|.
T Consensus 251 ~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~----i~W~~~d~~~l~ 326 (839)
T KOG0269|consen 251 DSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTG----IAWDSGDRINLW 326 (839)
T ss_pred CCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccc----eeccCCCceeeE
Confidence 776655566666689999999998764 66665 4778999999753 334444444444332 222 24567889
Q ss_pred EEeCCCcEEEEEccCc
Q 017314 320 AGSADGSVYIWSISKA 335 (373)
Q Consensus 320 sgs~Dg~i~iwd~~~~ 335 (373)
+++.||+|..-.++++
T Consensus 327 s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 327 SCSKDGTVLQHLFKNA 342 (839)
T ss_pred eecCccHHHHhhhhcc
Confidence 9999998877766654
No 136
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.7e-23 Score=186.60 Aligned_cols=275 Identities=16% Similarity=0.246 Sum_probs=221.7
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCce-eeeccccc-cceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeE
Q 017314 88 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL-SSTLYGCL-GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR 165 (373)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~-~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 165 (373)
..+|.+++|+.+.+.||.+-.||.|-||++..+-. ...+.++. ..|-+++|. ++..|++.+.+|.|.-||+.++++.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCcee
Confidence 46899999999999999999999999999987643 34555554 478889998 6678999999999999999999999
Q ss_pred EEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEe---ecCceeEEEEccCCCEEEEEeCCCcEEEEE
Q 017314 166 HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII---FHSNCNALAFSMDGQTIFSGHIDGNLRLWD 242 (373)
Q Consensus 166 ~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd 242 (373)
..+....+.+++++.+| ....++.|+.||.+...+...+....... ..+.+.+++|+|++..|++|+.||.|++||
T Consensus 104 ~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD 182 (691)
T ss_pred EEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEE
Confidence 99999999999999998 46678889999977777777765543322 235689999999999999999999999999
Q ss_pred CCCCeeeEEEec-------ccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCC
Q 017314 243 IQTGKLLSEVAA-------HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE 315 (373)
Q Consensus 243 ~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 315 (373)
..++..+..... ....-|-++.|-.+ ..|++|...|++.+||...+..+..+..+...+. .++..+++
T Consensus 183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl----~Lav~~~~ 257 (691)
T KOG2048|consen 183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVL----ALAVADNE 257 (691)
T ss_pred cCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhccee----EEEEcCCC
Confidence 999877662221 12234667777655 4688999999999999998877777766655543 36678899
Q ss_pred cEEEEEeCCCcEEEEEccCceE----EEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEE
Q 017314 316 SYVAAGSADGSVYIWSISKADI----VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV 371 (373)
Q Consensus 316 ~~l~sgs~Dg~i~iwd~~~~~~----~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~i 371 (373)
.++++++.|+.|.-+...+.+. ......|...|.+++..++ .|++|+.|+.+.+
T Consensus 258 d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 258 DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred CeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 9999999999999988766533 2233468888999999886 8999999998865
No 137
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=8.6e-25 Score=188.10 Aligned_cols=234 Identities=20% Similarity=0.357 Sum_probs=181.7
Q ss_pred CCEEEEeeCCCcEEEEeCCCCce---------------------eeeccccccceEEEEEcCCC-CEEEEEeCCCcEEEE
Q 017314 100 SARLISGGQDKSIKLWDTNTGSL---------------------SSTLYGCLGSVLDLAITHDN-RSVIAASSSNNLYVW 157 (373)
Q Consensus 100 ~~~l~s~s~D~~v~iwd~~~~~~---------------------~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~iw 157 (373)
|+++|.|..|..|.|||+.-... ...-.+|+..|.+++|+.+- +.|+|||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 67999999999999999852100 01123688888888887765 468899999999999
Q ss_pred EcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccC-CeeeeEEeecCceeEEEEccCC-CEEEEEeCC
Q 017314 158 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-GYCVNTIIFHSNCNALAFSMDG-QTIFSGHID 235 (373)
Q Consensus 158 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~g-~~l~sg~~d 235 (373)
|+.++++..++..|.++|.++.|++..+..+++||+|++|++.|.+. +..-..+.+...+..++|.|.. ..++++..|
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tdd 351 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDD 351 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCC
Confidence 99999999999999999999999999999999999999999999984 2233445666788999999855 456788899
Q ss_pred CcEEEEECCCC-eeeEEEecccccceEEEEEcCCCC-EEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEEC-
Q 017314 236 GNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRSGN-IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS- 312 (373)
Q Consensus 236 g~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s- 312 (373)
|+++-+|+|.. +++.++..|. .+|.+|++++... ++++++.|+++++|++..-..... ..+...+.. ..|+.
T Consensus 352 G~v~~~D~R~~~~~vwt~~AHd-~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v-~~~~~~~~r---l~c~~~ 426 (463)
T KOG0270|consen 352 GTVYYFDIRNPGKPVWTLKAHD-DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV-KEHSFKLGR---LHCFAL 426 (463)
T ss_pred ceEEeeecCCCCCceeEEEecc-CCcceEEecCCCCcceeeccccceEEEEeecCCCCccc-ccccccccc---eeeccc
Confidence 99999999875 8899999997 7999999998665 688899999999999864322111 111111111 12333
Q ss_pred -CCC-cEEEEEeCCCcEEEEEccCceEE
Q 017314 313 -PDE-SYVAAGSADGSVYIWSISKADIV 338 (373)
Q Consensus 313 -~~~-~~l~sgs~Dg~i~iwd~~~~~~~ 338 (373)
|+- -++|.|+..+.++|||+.+...+
T Consensus 427 ~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 427 DPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CCCcceEEEecCccceEEEeecccChhH
Confidence 433 46778888889999999876553
No 138
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=4.4e-24 Score=174.92 Aligned_cols=209 Identities=22% Similarity=0.319 Sum_probs=170.6
Q ss_pred cccccceEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCe------------e---EEEeecCCCcEEEEEEeeCCCCEEEE
Q 017314 127 YGCLGSVLDLAITH-DNRSVIAASSSNNLYVWDVNSGR------------V---RHTLTGHTDKVCAVDVSKISSRHVVS 190 (373)
Q Consensus 127 ~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~------------~---~~~~~~h~~~v~~~~~~~~~~~~~~s 190 (373)
..|.+.|+++.+.+ .|+++++|+.|+.|.+||+++.. + ...-.+|+-.|..+.|-|.+...+.|
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35778899988876 46899999999999999997643 1 01124688889999999999999999
Q ss_pred EeCCCcEEEEEccCCeeeeEEeecCceeEEEEccC---CCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcC
Q 017314 191 AAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMD---GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR 267 (373)
Q Consensus 191 ~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 267 (373)
+|.|.+++|||..+-+....+.....+.+-+++|- ..++++|..|-.|++-|+.+|..-+.+.+|. ..|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr-~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR-DGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc-CceEEEEecc
Confidence 99999999999999888888888888888888873 4467788899999999999999999999997 8999999999
Q ss_pred CCC-EEEEeeCCCeEEEEEcccc-ceeeeeeecC----------CeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCc
Q 017314 268 SGN-IILTSGRDNLHNLFDIRSL-EVCGSLRATG----------NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA 335 (373)
Q Consensus 268 ~~~-~l~s~~~d~~i~~~d~~~~-~~~~~~~~~~----------~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~ 335 (373)
... .|++|+.|+.|++||+|.. .+...+..|. ..+...+..+|++.++.++++++.|..+++|+..+|
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 877 4778999999999999875 3333332222 112233456789999999999999999999999876
Q ss_pred e
Q 017314 336 D 336 (373)
Q Consensus 336 ~ 336 (373)
+
T Consensus 279 ~ 279 (397)
T KOG4283|consen 279 R 279 (397)
T ss_pred c
Confidence 5
No 139
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.93 E-value=3.4e-25 Score=178.70 Aligned_cols=284 Identities=20% Similarity=0.269 Sum_probs=198.8
Q ss_pred cccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeecc-ccccceEEEEEcCCCCEEEEEeCCCcEE
Q 017314 77 PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY-GCLGSVLDLAITHDNRSVIAASSSNNLY 155 (373)
Q Consensus 77 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~~i~ 155 (373)
|......|++|.+.|+++.|..++ +|++|..-|.|++|++.+......+. .+...|+.+..-|+ ..+.+-+.|..+.
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLI 80 (323)
T ss_pred CCCCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEE
Confidence 344567788999999999998776 49999999999999999988888887 56778888888887 5788999999999
Q ss_pred EEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCC-cEEEEEcc---------CCeeeeEEeec-------Ccee
Q 017314 156 VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR-TLKVWDLH---------KGYCVNTIIFH-------SNCN 218 (373)
Q Consensus 156 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~-~i~vwd~~---------~~~~~~~~~~~-------~~~~ 218 (373)
+|++.-+..+. .|+-.+..+.|++.. +...+... ..-.++-+ .+...+..... ..+.
T Consensus 81 lw~ia~s~~i~---i~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvm 154 (323)
T KOG0322|consen 81 LWTIAYSAFIS---IHSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVM 154 (323)
T ss_pred EEEccCcceEE---Eeeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCcee
Confidence 99998765432 244344444444311 11111110 11111111 01111111110 1122
Q ss_pred EEEEc-cCCC--EEEEEeCCCcEEEEECCCCeee----------EEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEE
Q 017314 219 ALAFS-MDGQ--TIFSGHIDGNLRLWDIQTGKLL----------SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFD 285 (373)
Q Consensus 219 ~~~~~-~~g~--~l~sg~~dg~i~iwd~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d 285 (373)
+..+. .++. .+++|..+|.+-+||+.++..+ .....|. .++.++.|.+....=++++.+..+..|.
T Consensus 155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~-qpvlsldyas~~~rGisgga~dkl~~~S 233 (323)
T KOG0322|consen 155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK-QPVLSLDYASSCDRGISGGADDKLVMYS 233 (323)
T ss_pred eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhcc-CcceeeeechhhcCCcCCCccccceeee
Confidence 32221 1333 4568889999999999987333 2333444 7899999998877778888888888888
Q ss_pred ccccc----eeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEE
Q 017314 286 IRSLE----VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLA 361 (373)
Q Consensus 286 ~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~ 361 (373)
+..-. ...++...... .+.+.+-||++.+||++.|++||||+..+..++..|+-|.+.|++++|+|+...||
T Consensus 234 l~~s~gslq~~~e~~lknpG----v~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmA 309 (323)
T KOG0322|consen 234 LNHSTGSLQIRKEITLKNPG----VSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMA 309 (323)
T ss_pred eccccCcccccceEEecCCC----ccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhh
Confidence 76421 11112222222 22355789999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEcC
Q 017314 362 SADKNGVVCVWT 373 (373)
Q Consensus 362 s~s~dg~i~iW~ 373 (373)
++|.|+.|-+|+
T Consensus 310 aaskD~rISLWk 321 (323)
T KOG0322|consen 310 AASKDARISLWK 321 (323)
T ss_pred hccCCceEEeee
Confidence 999999999995
No 140
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=1.4e-24 Score=189.17 Aligned_cols=262 Identities=18% Similarity=0.249 Sum_probs=205.2
Q ss_pred cEEEEEEcCCCC-EEEEeeCCCcEEEEeCCCC--ceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEE
Q 017314 90 GCASILFEYNSA-RLISGGQDKSIKLWDTNTG--SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH 166 (373)
Q Consensus 90 ~v~~~~~~~~~~-~l~s~s~D~~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 166 (373)
++.++.|+.... ..++.+.|..|++|.-... .....-......-.|++......++++|+..+.|+|||++..-+.+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 488899987664 2344456889999964322 1211111111233455555566899999999999999999777788
Q ss_pred EeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC--ceeEEEEccCCCEEE-EEeCCCcEEEEEC
Q 017314 167 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS--NCNALAFSMDGQTIF-SGHIDGNLRLWDI 243 (373)
Q Consensus 167 ~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~-sg~~dg~i~iwd~ 243 (373)
.+++|++.|+++.++. ...+|++++..|.|.|..+.++....++.... .+.-+.|+|..+.++ +++.+|.|.+||+
T Consensus 116 ~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv 194 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV 194 (673)
T ss_pred hccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence 8999999999999987 56799999999999999999887766665553 356889999877654 7899999999999
Q ss_pred CCCeeeEEEecccccceEEEEEcCCCC-EEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEe
Q 017314 244 QTGKLLSEVAAHSLAAVTSISLSRSGN-IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS 322 (373)
Q Consensus 244 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs 322 (373)
.....+......+..+...|+|+|.+. +|++.|.|..|.+||.+.......+.+. .+++.++|+++|.+|+.|+
T Consensus 195 ~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~-----~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 195 QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS-----HPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred cCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec-----CCcceeeecCCceEEEeec
Confidence 888777766555558889999999765 7788999999999999876655555432 2445688999999999999
Q ss_pred CCCcEEEEEccC-ceEEEEeccCCccEEEEEEcCCC
Q 017314 323 ADGSVYIWSISK-ADIVRTLKEHTAPVLSCSWSGLG 357 (373)
Q Consensus 323 ~Dg~i~iwd~~~-~~~~~~l~~h~~~V~~~~~s~~g 357 (373)
..|.|..||+.. ..++..+..|...|++++|-|.-
T Consensus 270 s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 270 SKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999999975 56789999999999999998763
No 141
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.2e-24 Score=172.19 Aligned_cols=231 Identities=23% Similarity=0.260 Sum_probs=181.3
Q ss_pred HHHhcccccceeeccccCccccccccccccceEEecCccCcEEEEEEcC--CCCEEEEeeCCCcEEEEeCCCCc--eeee
Q 017314 50 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEY--NSARLISGGQDKSIKLWDTNTGS--LSST 125 (373)
Q Consensus 50 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~v~iwd~~~~~--~~~~ 125 (373)
..|++.+.|+.+++-... ...+++...+|++|.++|+.++|.. -|..|||++.||.|.||.-++++ ....
T Consensus 24 krlATcsSD~tVkIf~v~------~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e 97 (299)
T KOG1332|consen 24 KRLATCSSDGTVKIFEVR------NNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYE 97 (299)
T ss_pred ceeeeecCCccEEEEEEc------CCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhh
Confidence 468889999988864432 2234567789999999999999986 79999999999999999988773 3455
Q ss_pred ccccccceEEEEEcCCC--CEEEEEeCCCcEEEEEcCCC---eeEEEeecCCCcEEEEEEeeCCC-------------CE
Q 017314 126 LYGCLGSVLDLAITHDN--RSVIAASSSNNLYVWDVNSG---RVRHTLTGHTDKVCAVDVSKISS-------------RH 187 (373)
Q Consensus 126 ~~~~~~~v~~~~~~~~~--~~l~s~s~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~-------------~~ 187 (373)
...|..+|++++|.|.+ -.|++++.||.|.|.+.++. ........|.-.|+++++.|... +.
T Consensus 98 ~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr 177 (299)
T KOG1332|consen 98 HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR 177 (299)
T ss_pred hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence 67899999999998875 47899999999999988754 23446678999999999988521 45
Q ss_pred EEEEeCCCcEEEEEccCCee--eeEEeecCc-eeEEEEccCC----CEEEEEeCCCcEEEEECCCCee--eEEEeccccc
Q 017314 188 VVSAAYDRTLKVWDLHKGYC--VNTIIFHSN-CNALAFSMDG----QTIFSGHIDGNLRLWDIQTGKL--LSEVAAHSLA 258 (373)
Q Consensus 188 ~~s~s~D~~i~vwd~~~~~~--~~~~~~~~~-~~~~~~~~~g----~~l~sg~~dg~i~iwd~~~~~~--~~~~~~~~~~ 258 (373)
|+||+.|..|+||+...+.- .+++..|.. +..+++.|.- .+|+++++||++-||..+.... ..++......
T Consensus 178 lvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~ 257 (299)
T KOG1332|consen 178 LVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPD 257 (299)
T ss_pred eeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCc
Confidence 99999999999999987632 233555554 7889999964 5799999999999998763211 1111111235
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEEc
Q 017314 259 AVTSISLSRSGNIILTSGRDNLHNLFDI 286 (373)
Q Consensus 259 ~v~~~~~~~~~~~l~s~~~d~~i~~~d~ 286 (373)
.+..++|+..|++|+.++.|+.+.+|.-
T Consensus 258 ~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 258 VVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred ceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 7899999999999999999999999963
No 142
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=3.5e-23 Score=171.68 Aligned_cols=272 Identities=18% Similarity=0.286 Sum_probs=202.7
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEeCCCCce------------eeecc-ccccceEEEEE-------cCCCCEEEEEeC
Q 017314 91 CASILFEYNSARLISGGQDKSIKLWDTNTGSL------------SSTLY-GCLGSVLDLAI-------THDNRSVIAASS 150 (373)
Q Consensus 91 v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~------------~~~~~-~~~~~v~~~~~-------~~~~~~l~s~s~ 150 (373)
.....|+|||+.|++-+.|..+++|++...-. ..+++ .....|.+..| .|+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 34678999999999999999999999853210 01111 11234555554 477789999999
Q ss_pred CCcEEEEEcCCCeeEEEeec--CCCcE---EEEEEeeCCCCEEEEEeCCCcEEEEEc-cCCeeeeEE--eec------Cc
Q 017314 151 SNNLYVWDVNSGRVRHTLTG--HTDKV---CAVDVSKISSRHVVSAAYDRTLKVWDL-HKGYCVNTI--IFH------SN 216 (373)
Q Consensus 151 d~~i~iwd~~~~~~~~~~~~--h~~~v---~~~~~~~~~~~~~~s~s~D~~i~vwd~-~~~~~~~~~--~~~------~~ 216 (373)
+.-|++||.-+|+...++.+ |.+.+ .++.|+| ++.+|+ ++..++||++|+ +.|+-...+ ..+ .-
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlf-aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLF-AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEe-ecccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 99999999999988777654 55554 5788988 566666 567889999999 555422111 111 23
Q ss_pred eeEEEEccCC-CEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeC-CCeEEEEEccccc-eee
Q 017314 217 CNALAFSMDG-QTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR-DNLHNLFDIRSLE-VCG 293 (373)
Q Consensus 217 ~~~~~~~~~g-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~~~d~~~~~-~~~ 293 (373)
+.+++|+|.. ..++.|+...++-|+.-....++..+-+|. +.|+.+.|.++|+.|.+|.+ |..|..||+|... ++-
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~-gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG-GGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC-CCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence 6789999954 488899999999999888888888888776 89999999999999999886 6789999999643 333
Q ss_pred eeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccC-ceEEEEeccCCccEEEEEEcCCCCcEEEEeCC
Q 017314 294 SLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK-ADIVRTLKEHTAPVLSCSWSGLGKPLASADKN 366 (373)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~-~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~d 366 (373)
.+..+.......+ ...+.|+|++|++|+.||.|++||+++ +..+..+..|...|+.++++|-=.++|+++..
T Consensus 289 ~L~rhv~~TNQRI-~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 289 ALERHVGDTNQRI-LFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhccCccceE-EEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 3333322111110 123579999999999999999999988 77788888899999999999987777777643
No 143
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.92 E-value=3e-25 Score=203.98 Aligned_cols=276 Identities=21% Similarity=0.338 Sum_probs=214.2
Q ss_pred EEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 017314 82 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 161 (373)
Q Consensus 82 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 161 (373)
..|.+|...|+|+.|...|.++++|+.|..|+||.++++.+.....||.+.+++++++.++.+++++|.|..|++|.+.+
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeee-----eEEeecCceeEEEEccCCCEEEEEeCCC
Q 017314 162 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV-----NTIIFHSNCNALAFSMDGQTIFSGHIDG 236 (373)
Q Consensus 162 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~-----~~~~~~~~~~~~~~~~~g~~l~sg~~dg 236 (373)
+.++..+.+|++.|++++|+|.. +.+.||++++||.+-...+ ..+.....+.++.|..++..++||+.|+
T Consensus 264 ~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 264 GAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred CchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 99999999999999999999843 7889999999998721110 0111223356677777888899999999
Q ss_pred cEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCC-
Q 017314 237 NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE- 315 (373)
Q Consensus 237 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~- 315 (373)
.-+.|.+.... .+...-+..-.-+....+.+++-.+-.+.+|++-.+...+.+.++..... .+-++|-+
T Consensus 339 ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~y----vLd~Hpfn~ 408 (1113)
T KOG0644|consen 339 EARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVY----VLDVHPFNP 408 (1113)
T ss_pred ccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccccee----eeeecCCCc
Confidence 99888764311 11100011000111124555666677788999888776666666555433 24567754
Q ss_pred cEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEc
Q 017314 316 SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372 (373)
Q Consensus 316 ~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW 372 (373)
....+++.||...|||+-.|.+++.+....+.+...+||+||..++....-|.+.|.
T Consensus 409 ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 409 RIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred HhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEe
Confidence 455689999999999999998877654435567889999999999999888988874
No 144
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.4e-23 Score=190.33 Aligned_cols=244 Identities=18% Similarity=0.271 Sum_probs=204.8
Q ss_pred ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCC---CCEEEEEeCCCcEEEEEcCCC-
Q 017314 87 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHD---NRSVIAASSSNNLYVWDVNSG- 162 (373)
Q Consensus 87 h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~s~d~~i~iwd~~~~- 162 (373)
...++.+++.+|+|++||+|..-|++||||+.+-+....+..|...|.++.|+.. .++|++++.|..|.|||+...
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence 4568999999999999999999999999999988888889999999999999864 357999999999999998654
Q ss_pred eeEEEeecCCCcEEEEEEeeCCC-CEEEEEeCCCcEEEEEccCCeeeeEEe------ecCceeEEEEccCCCEEEEEeCC
Q 017314 163 RVRHTLTGHTDKVCAVDVSKISS-RHVVSAAYDRTLKVWDLHKGYCVNTII------FHSNCNALAFSMDGQTIFSGHID 235 (373)
Q Consensus 163 ~~~~~~~~h~~~v~~~~~~~~~~-~~~~s~s~D~~i~vwd~~~~~~~~~~~------~~~~~~~~~~~~~g~~l~sg~~d 235 (373)
.++.++.+|+..|+++.|...+. ...++|+.|+.|.+--.++......+. .+.....+++.|..+++++++.|
T Consensus 538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQD 617 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQD 617 (1080)
T ss_pred chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecc
Confidence 56789999999999999976442 467999999987643222111111121 12346789999999999999999
Q ss_pred CcEEEEECCCCeeeEEEeccc--ccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECC
Q 017314 236 GNLRLWDIQTGKLLSEVAAHS--LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP 313 (373)
Q Consensus 236 g~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 313 (373)
..|||||+.+++..+.+.+.. .+..--+..+|.|.||++...|.++.++|.-+++++....+|...+.. +.|.+
T Consensus 618 rnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG----~kF~n 693 (1080)
T KOG1408|consen 618 RNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTG----VKFLN 693 (1080)
T ss_pred cceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheee----eeecc
Confidence 999999999999999887643 245667889999999999999999999999999999998888776643 67999
Q ss_pred CCcEEEEEeCCCcEEEEEccC
Q 017314 314 DESYVAAGSADGSVYIWSISK 334 (373)
Q Consensus 314 ~~~~l~sgs~Dg~i~iwd~~~ 334 (373)
|.+.|++.+.||.|.||.+..
T Consensus 694 DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 694 DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cchhheeecCCceEEEEECch
Confidence 999999999999999999864
No 145
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.92 E-value=1.2e-22 Score=168.85 Aligned_cols=288 Identities=20% Similarity=0.324 Sum_probs=208.1
Q ss_pred EecCccCcEEEEEEcC-----CCCEEEEeeCCCcEEEEeCCCCc---eeeecc--ccccceEEEEEcCCC----CEEEEE
Q 017314 83 KINAHEGGCASILFEY-----NSARLISGGQDKSIKLWDTNTGS---LSSTLY--GCLGSVLDLAITHDN----RSVIAA 148 (373)
Q Consensus 83 ~~~~h~~~v~~~~~~~-----~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~--~~~~~v~~~~~~~~~----~~l~s~ 148 (373)
....|+.++..++|++ +.+.++++|. ..+.+|.....- .++.+. .|......++|+-|. .++++|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3457889999999983 2345666654 577888765432 222222 245566777776543 478888
Q ss_pred eCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEe---ec-CceeEEEEcc
Q 017314 149 SSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII---FH-SNCNALAFSM 224 (373)
Q Consensus 149 s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~---~~-~~~~~~~~~~ 224 (373)
+.-|.|+|.|+.++++...+.+|...|..+.++|...+++++||.|.+||+||+++..|+..+- .| ..+.++.|++
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence 9999999999999999999999999999999999989999999999999999999999987763 23 4599999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeeEEEec------------------cc---------ccceEEEEEcCCCCEEEEeeC
Q 017314 225 DGQTIFSGHIDGNLRLWDIQTGKLLSEVAA------------------HS---------LAAVTSISLSRSGNIILTSGR 277 (373)
Q Consensus 225 ~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~------------------~~---------~~~v~~~~~~~~~~~l~s~~~ 277 (373)
+|.+|+++++|.+|++|++...+....+.. |- ...|.|+.| -|+++++-|-
T Consensus 192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd~ilSksc 269 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGDFILSKSC 269 (385)
T ss_pred CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--Hhhheeeccc
Confidence 999999999999999999985332111110 00 011111111 2578999999
Q ss_pred CCeEEEEEccccce-eeee---------eecCC-eeecC-eeeeEECCCCcEEEEEeCCCcEEEEEccCceEE--EEecc
Q 017314 278 DNLHNLFDIRSLEV-CGSL---------RATGN-RVASN-WSRSCISPDESYVAAGSADGSVYIWSISKADIV--RTLKE 343 (373)
Q Consensus 278 d~~i~~~d~~~~~~-~~~~---------~~~~~-~~~~~-~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~--~~l~~ 343 (373)
++.|..|.....+. .... ..... +.... +.+.++.|-++.||.|.+.|.|++||+...++. .++..
T Consensus 270 enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~ 349 (385)
T KOG1034|consen 270 ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTH 349 (385)
T ss_pred CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEe
Confidence 99999998732221 1111 11111 11111 234567888999999999999999999876653 23322
Q ss_pred --CCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 344 --HTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 344 --h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
....|...+||.||..|+....|++|.-|+
T Consensus 350 s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 350 SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred ccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 235789999999999999999999998885
No 146
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=1.7e-22 Score=182.71 Aligned_cols=314 Identities=20% Similarity=0.311 Sum_probs=230.6
Q ss_pred HHHhcccccceeeccccCcc--ccccccccccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC---ceee
Q 017314 50 EKLAKQQVDGVVRRSEEGAE--FFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG---SLSS 124 (373)
Q Consensus 50 ~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~---~~~~ 124 (373)
..|.+.+.|..+..|..... ++.. .-+.....+-.++.++..|+++++.+++-|.-|-.++|-.+.. ....
T Consensus 280 ~~LLSASaDksmiiW~pd~~tGiWv~----~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~ 355 (764)
T KOG1063|consen 280 LDLLSASADKSMIIWKPDENTGIWVD----VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEP 355 (764)
T ss_pred hhheecccCcceEEEecCCccceEEE----EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecc
Confidence 35777788888777765432 2211 1122233355678999999999999999999999999983321 2345
Q ss_pred eccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe----eEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 017314 125 TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR----VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200 (373)
Q Consensus 125 ~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vw 200 (373)
.+.||.+.|.+++|.|.|.+|+++|.|.|-|++-.-..+ .+...+-|....+|+++-+ ....+++|...+.+|++
T Consensus 356 ~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF 434 (764)
T KOG1063|consen 356 VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVF 434 (764)
T ss_pred ccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCceeeecccceeeeee
Confidence 678999999999999999999999999999998754221 2233456778888998865 35678999999999999
Q ss_pred EccCCe-----------------------------------------------eeeE-----------------------
Q 017314 201 DLHKGY-----------------------------------------------CVNT----------------------- 210 (373)
Q Consensus 201 d~~~~~-----------------------------------------------~~~~----------------------- 210 (373)
+..... +..+
T Consensus 435 ~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tL 514 (764)
T KOG1063|consen 435 EAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTL 514 (764)
T ss_pred cCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhcc
Confidence 753110 0000
Q ss_pred ------Eeec-CceeEEEEccCCCEEEEEeCCC-----cEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCC
Q 017314 211 ------IIFH-SNCNALAFSMDGQTIFSGHIDG-----NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 278 (373)
Q Consensus 211 ------~~~~-~~~~~~~~~~~g~~l~sg~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 278 (373)
+..| .++.+++.+|+|+.++|++... .|++|+..+-..++.+..|+ -.|+.++|+||+++|++.++|
T Consensus 515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs-LTVT~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHS-LTVTRLAFSPDGRYLLSVSRD 593 (764)
T ss_pred chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccc-eEEEEEEECCCCcEEEEeecC
Confidence 0001 1467899999999999987543 59999999988888899998 789999999999999999999
Q ss_pred CeEEEEEcccccee----eeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCc--eEEEE--eccCCccEEE
Q 017314 279 NLHNLFDIRSLEVC----GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA--DIVRT--LKEHTAPVLS 350 (373)
Q Consensus 279 ~~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~--~~~~~--l~~h~~~V~~ 350 (373)
++..+|........ .....|.. .+..+.++|++.||+|+|.|.+|++|..... +.+.. ...+..+|++
T Consensus 594 Rt~sl~~~~~~~~~e~~fa~~k~HtR----IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTA 669 (764)
T KOG1063|consen 594 RTVSLYEVQEDIKDEFRFACLKAHTR----IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTA 669 (764)
T ss_pred ceEEeeeeecccchhhhhccccccce----EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceee
Confidence 99999987432211 11122222 2234568999999999999999999998876 33332 3358889999
Q ss_pred EEEcCC-----CCcEEEEeCCCeEEEcC
Q 017314 351 CSWSGL-----GKPLASADKNGVVCVWT 373 (373)
Q Consensus 351 ~~~s~~-----g~~l~s~s~dg~i~iW~ 373 (373)
++|.|- +..++.|-..|.|.+|+
T Consensus 670 v~~~~~~~~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 670 VAYLPVDHNEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred EEeeccccccccceEEEEecccEEEEEe
Confidence 999873 22567777889999995
No 147
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=2.2e-23 Score=176.01 Aligned_cols=206 Identities=23% Similarity=0.395 Sum_probs=169.1
Q ss_pred EEecCccCcEEEEEEcCCC--CEEEEeeCCCcEEEEeCCC----------------CceeeeccccccceEEEEEcCCC-
Q 017314 82 HKINAHEGGCASILFEYNS--ARLISGGQDKSIKLWDTNT----------------GSLSSTLYGCLGSVLDLAITHDN- 142 (373)
Q Consensus 82 ~~~~~h~~~v~~~~~~~~~--~~l~s~s~D~~v~iwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~~- 142 (373)
....+|.+.+.-+.-++-+ .+.++-+..|.|.|||+.. .+++.++.+|.+.=..++|||-.
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 4455788888888777654 4666667889999999742 23466778898888999999944
Q ss_pred CEEEEEeCCCcEEEEEcCCCee---EEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCC---eeeeEEeecCc
Q 017314 143 RSVIAASSSNNLYVWDVNSGRV---RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG---YCVNTIIFHSN 216 (373)
Q Consensus 143 ~~l~s~s~d~~i~iwd~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~---~~~~~~~~~~~ 216 (373)
..|++|..-+.|++|...+|.- ..-|.+|+..|-.+.|+|.....|+|||.||+|+|||++.+ .++.+-.+.+.
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 3488888889999999988742 33567899999999999999999999999999999999988 45555445567
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEECCC---CeeeEEEecccccceEEEEEcCCC-CEEEEeeCCCeEEEEEccc
Q 017314 217 CNALAFSMDGQTIFSGHIDGNLRLWDIQT---GKLLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRS 288 (373)
Q Consensus 217 ~~~~~~~~~g~~l~sg~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~ 288 (373)
|+.++|+.+-.+|++|+.||+++|||++. ++++..+..|. .+|++|.|+|.. ..|+++|.|+.+.+||+..
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk-~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK-APITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc-CCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 99999999888999999999999999975 56777888886 899999999865 5788899999999999853
No 148
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=172.58 Aligned_cols=291 Identities=16% Similarity=0.214 Sum_probs=216.4
Q ss_pred cceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC------Cceeeecc-ccccceEEEEEcCCCCEEEEEeCC
Q 017314 79 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT------GSLSSTLY-GCLGSVLDLAITHDNRSVIAASSS 151 (373)
Q Consensus 79 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d 151 (373)
.|+..+.+|.+.|.++.|+.++++|++||.|..+++|+++. .+++.... .|...|.+++|...++.+++|..+
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 46677889999999999999999999999999999999853 23333332 355889999999999999999999
Q ss_pred CcEEEEEcCCCeeEEEeecCCC---cEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEE----eecCceeEEEEcc
Q 017314 152 NNLYVWDVNSGRVRHTLTGHTD---KVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI----IFHSNCNALAFSM 224 (373)
Q Consensus 152 ~~i~iwd~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~ 224 (373)
++|..-|+++.+.+..+. |.+ .|+.+..+|. .+.+++.+.++.|.+||.+..+..... ........+.|+|
T Consensus 127 ~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred ceeEeeecccceeeeeec-ccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence 999999999998887764 444 8999999996 788999999999999999865421111 1223456788999
Q ss_pred C-CCEEEEEeCCCcEEEEECCCCeee-EEEec----cc-ccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeee
Q 017314 225 D-GQTIFSGHIDGNLRLWDIQTGKLL-SEVAA----HS-LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA 297 (373)
Q Consensus 225 ~-g~~l~sg~~dg~i~iwd~~~~~~~-~~~~~----~~-~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~ 297 (373)
- ..+|++.+..+-+.+||.+..+.. ..... .. ...-.++-|+|+|+.|.+--+...-.+||+.+..+. .++.
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~-V~k~ 283 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF-VLKS 283 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce-eEec
Confidence 5 456778888899999999865321 11100 00 123356789999999988777766778888763321 1221
Q ss_pred -cCC---eeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCc-----------------------eEEEEeccCCccEEE
Q 017314 298 -TGN---RVASNWSRSCISPDESYVAAGSADGSVYIWSISKA-----------------------DIVRTLKEHTAPVLS 350 (373)
Q Consensus 298 -~~~---~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~-----------------------~~~~~l~~h~~~V~~ 350 (373)
|.. -..+....+||- +...+++||.+-.|++|.+... +.+..|+||..-++.
T Consensus 284 D~N~~GY~N~~T~KS~~F~-~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ 362 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFI-DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ 362 (609)
T ss_pred cCCCCcceeeeeeeeeeee-cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence 111 111222335554 4455999999999999997531 124468899999999
Q ss_pred EEEcCCCCcEEEEeCCCeEEEcC
Q 017314 351 CSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 351 ~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
|.|+|...+|++.+-.+.++||.
T Consensus 363 VRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 363 VRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eeecCCcceEeccchhhheeccc
Confidence 99999999999999999999994
No 149
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=3.8e-23 Score=185.25 Aligned_cols=273 Identities=22% Similarity=0.300 Sum_probs=189.8
Q ss_pred EEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeee--ccccccceEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 017314 82 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST--LYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWD 158 (373)
Q Consensus 82 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd 158 (373)
....+|.+.|..+.|-|....|++++.|.++|.||++++.+... +.||.+.|-+++|.+.+. .+++|+.|+.|.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 44568999999999999778999999999999999999988766 899999999999999875 678999999999999
Q ss_pred cCCCe---------------------------eEEEeecCCCcEEE---EEEeeCCCCEEEEEeC-CCcEEEEEccCCee
Q 017314 159 VNSGR---------------------------VRHTLTGHTDKVCA---VDVSKISSRHVVSAAY-DRTLKVWDLHKGYC 207 (373)
Q Consensus 159 ~~~~~---------------------------~~~~~~~h~~~v~~---~~~~~~~~~~~~s~s~-D~~i~vwd~~~~~~ 207 (373)
.+-.. .++.-.+|...+.+ +.+.. +...|+|+|. |+.|+|||+++.++
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeeccccc
Confidence 85321 01112234444433 33333 5678888887 99999999987654
Q ss_pred eeE--------Eeec----CceeEEEEccCCCEEEEEeCCCcEEEEECCCCee--eEEEecccccce-EEEEEcCCCCEE
Q 017314 208 VNT--------IIFH----SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL--LSEVAAHSLAAV-TSISLSRSGNII 272 (373)
Q Consensus 208 ~~~--------~~~~----~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~--~~~~~~~~~~~v-~~~~~~~~~~~l 272 (373)
... +..+ ..+.+++....|.+|++.+.|+.|.+||+.+... +..+.++....+ ..-..+|++.++
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l 332 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL 332 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence 321 1112 1356777888899999988899999999986432 222222211111 122468999999
Q ss_pred EEeeCCCeEEEEEcccccee-eeeeecCCeeecCeeeeEECC-CCcEEEEEeCCCcEEEEEccCce--------------
Q 017314 273 LTSGRDNLHNLFDIRSLEVC-GSLRATGNRVASNWSRSCISP-DESYVAAGSADGSVYIWSISKAD-------------- 336 (373)
Q Consensus 273 ~s~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~s~-~~~~l~sgs~Dg~i~iwd~~~~~-------------- 336 (373)
++++.|....+|.+.+.+.- ..+.+|...+.. +++.| .-.-++++++|-+++||++..+-
T Consensus 333 ~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~----V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~ 408 (720)
T KOG0321|consen 333 LSGSSDEQAYIWVVSSPEAPPALLLGHTREVTT----VRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYE 408 (720)
T ss_pred eccCCCcceeeeeecCccCChhhhhCcceEEEE----EeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhh
Confidence 99999999999998876532 223333333322 33333 22456777999999999996542
Q ss_pred EEEEeccCCccEEEEEEcCCCCc
Q 017314 337 IVRTLKEHTAPVLSCSWSGLGKP 359 (373)
Q Consensus 337 ~~~~l~~h~~~V~~~~~s~~g~~ 359 (373)
....+++|.-.+..+.|+-.+.+
T Consensus 409 ~~~rfk~~~p~~~nv~ss~~~t~ 431 (720)
T KOG0321|consen 409 YSRRFKGHLPQVLNVNSSLRKTY 431 (720)
T ss_pred hhhhhhccccccccccccccccc
Confidence 12335667666666666654433
No 150
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=9.7e-23 Score=168.51 Aligned_cols=235 Identities=17% Similarity=0.300 Sum_probs=181.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEe
Q 017314 133 VLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII 212 (373)
Q Consensus 133 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~ 212 (373)
..++.|++.|.+|+.|..||.|.|||+.|...-+.+.+|..+|++++|++ +++.++|+|.|..|++||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 67899999999999999999999999999988889999999999999998 78999999999999999999999999999
Q ss_pred ecCceeEEEEccCC-CEEEEEeCCCcEEEEECCCCeeeEEEecccc----cceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q 017314 213 FHSNCNALAFSMDG-QTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL----AAVTSISLSRSGNIILTSGRDNLHNLFDIR 287 (373)
Q Consensus 213 ~~~~~~~~~~~~~g-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~ 287 (373)
+.+.+..+.|+|.. +.+++.-.+..-.+.++..+.. ..+..... ..-....|++.|+++++|...|.+.++|..
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 99999999999944 3444444455555555543221 11111110 112223689999999999999999999999
Q ss_pred ccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCc-------eE--EEEecc--CCccEEEEEEcCC
Q 017314 288 SLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA-------DI--VRTLKE--HTAPVLSCSWSGL 356 (373)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~-------~~--~~~l~~--h~~~V~~~~~s~~ 356 (373)
+.+++..++... ...+....++..|++|+.-+.|+.||.|++..- ++ .+.++. ...+-.+|+||.+
T Consensus 184 t~e~vas~rits---~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d 260 (405)
T KOG1273|consen 184 TLECVASFRITS---VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD 260 (405)
T ss_pred hheeeeeeeech---heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence 999988877554 122334567889999999999999999998631 11 122222 1234478999999
Q ss_pred CCcEEEEeC-CCeEEEc
Q 017314 357 GKPLASADK-NGVVCVW 372 (373)
Q Consensus 357 g~~l~s~s~-dg~i~iW 372 (373)
|.|++.++. ...++||
T Consensus 261 geYv~a~s~~aHaLYIW 277 (405)
T KOG1273|consen 261 GEYVCAGSARAHALYIW 277 (405)
T ss_pred ccEEEeccccceeEEEE
Confidence 999977764 5678888
No 151
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.91 E-value=1.7e-20 Score=173.60 Aligned_cols=284 Identities=35% Similarity=0.607 Sum_probs=223.9
Q ss_pred EecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCc-eeeecccccc-ceEEEEE-cCCCC-EEEEEeC-CCcEEEE
Q 017314 83 KINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS-LSSTLYGCLG-SVLDLAI-THDNR-SVIAASS-SNNLYVW 157 (373)
Q Consensus 83 ~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~-~l~s~s~-d~~i~iw 157 (373)
.+..|...+..+.|.+++..++.++.|+.+.+|+...+. ....+.+... .+..+.+ .+++. .++..+. |+.+++|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 456899999999999999999999999999999998886 5666655333 6677777 78887 5555455 8999999
Q ss_pred EcCC-CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEEccCCeeeeEEeec-CceeEEEEccCCC-EEEEEe
Q 017314 158 DVNS-GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY-DRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQ-TIFSGH 233 (373)
Q Consensus 158 d~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~-D~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~g~-~l~sg~ 233 (373)
|... ......+..|...|..+.+++. ...+++++. |+.+++|++..+..+..+..| ..+.+++++|++. .+++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCC-CCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 9998 7888899999999999999984 557888875 999999999987777777654 4589999999998 555569
Q ss_pred CCCcEEEEECCCCeeeE-EEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccce-eeeeeecCCeeecCeeeeEE
Q 017314 234 IDGNLRLWDIQTGKLLS-EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV-CGSLRATGNRVASNWSRSCI 311 (373)
Q Consensus 234 ~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~ 311 (373)
.|+.|++||...+..+. .+..|. ... ...|+|++.++++++.|+.+++|+.+.... ...+..+ ........+
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~ 292 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHS-DSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH----SSSVLSVAF 292 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCC-cce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC----CccEEEEEE
Confidence 99999999999887777 566665 332 228999999999999999999999986654 2222222 223334578
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCceEEEEec--cCCccEEEEEEcCCCCcEEEE-eCCCeEEEcC
Q 017314 312 SPDESYVAAGSADGSVYIWSISKADIVRTLK--EHTAPVLSCSWSGLGKPLASA-DKNGVVCVWT 373 (373)
Q Consensus 312 s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~--~h~~~V~~~~~s~~g~~l~s~-s~dg~i~iW~ 373 (373)
.|++..+++++.|+.+.+|+........... .|...|..+.|++++..++.+ ..|+.+.+|+
T Consensus 293 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 293 SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred CCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 8988888889999999999998887766665 788889999994343555555 6888888874
No 152
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=8.4e-23 Score=169.14 Aligned_cols=202 Identities=19% Similarity=0.365 Sum_probs=151.3
Q ss_pred EEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCC-----eeeeEEeecCceeEEEEccCCCEEE-EEeCCCcEE
Q 017314 166 HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-----YCVNTIIFHSNCNALAFSMDGQTIF-SGHIDGNLR 239 (373)
Q Consensus 166 ~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~g~~l~-sg~~dg~i~ 239 (373)
..+++|.+.|++++|+. +++.++|++.|++|++|+++.- ++++.-......+.+.|+||-+-++ +.....+++
T Consensus 80 ~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 36789999999999987 7899999999999999998742 1222211223468899999987665 455566799
Q ss_pred EEECCC---CeeeEE--------EecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeee
Q 017314 240 LWDIQT---GKLLSE--------VAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSR 308 (373)
Q Consensus 240 iwd~~~---~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 308 (373)
+|.+.. |..... +...+...+-.+-....+.+|.+++.|..|.+|+++ ++.++.+....... ..
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n----~~ 233 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSN----YD 233 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccc----cc
Confidence 997642 221111 111112345567777888999999999999999998 66665554322221 23
Q ss_pred eEECCCCcEEEEEeCCCcEEEEEcc---Cce-----EEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 309 SCISPDESYVAAGSADGSVYIWSIS---KAD-----IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 309 ~~~s~~~~~l~sgs~Dg~i~iwd~~---~~~-----~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
+++||+|++|++++.--.|++|.+- .|+ .+-.|+||...|..++|||+...++|+|.||.++||+
T Consensus 234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEee
Confidence 5789999999999999999999973 232 2446889999999999999999999999999999996
No 153
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2e-23 Score=184.76 Aligned_cols=260 Identities=20% Similarity=0.311 Sum_probs=194.3
Q ss_pred ceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC--------CceeeeccccccceEEEEEcCCCCEEEEEeCC
Q 017314 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT--------GSLSSTLYGCLGSVLDLAITHDNRSVIAASSS 151 (373)
Q Consensus 80 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d 151 (373)
...++..|...++.+.|.+...-|++|+.|+++++|++.. -+.+.++++|.++|.|+++.+++..+++|+-|
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence 3457888999999999999999999999999999999932 13577899999999999999999999999999
Q ss_pred CcEEEEEcCCC----------eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEee---cCcee
Q 017314 152 NNLYVWDVNSG----------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF---HSNCN 218 (373)
Q Consensus 152 ~~i~iwd~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~---~~~~~ 218 (373)
|+|+.|++... ....++.||++.|+.++++.. ...|++||.|||+++|+.....+ .++.. +.-..
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST-KDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc-ccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 99999966421 235678999999999999984 55799999999999999876554 22221 12234
Q ss_pred EEEEccCC-CEEEEEeCCCcEEEEECCCCeeeEEEeccc------ccceEEEEEcCCCCEEEEeeCCCeEEEEEccccce
Q 017314 219 ALAFSMDG-QTIFSGHIDGNLRLWDIQTGKLLSEVAAHS------LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV 291 (373)
Q Consensus 219 ~~~~~~~g-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~ 291 (373)
++.+.... ...++...-+.--+.|+.....+..+.... ...+.-+...|.+.+.+++..|+.|+++|..++..
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 44443322 122222222223333444333333222111 13466778889999999999999999999999988
Q ss_pred eeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCC
Q 017314 292 CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHT 345 (373)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~ 345 (373)
+.....+...+. ..++.|+|-||++|+.||.|++|.+....++.....|.
T Consensus 524 l~s~~a~~~svt----slai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 524 LHSMVAHKDSVT----SLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred chheeeccceec----ceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 877776655443 47889999999999999999999998877776655553
No 154
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=9e-23 Score=175.76 Aligned_cols=227 Identities=20% Similarity=0.294 Sum_probs=173.0
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC---eeEE------------------EeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 017314 141 DNRSVIAASSSNNLYVWDVNSG---RVRH------------------TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 199 (373)
Q Consensus 141 ~~~~l~s~s~d~~i~iwd~~~~---~~~~------------------~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~v 199 (373)
-|++++.|+.|..|.|||+.-- .+.. .-.+|++.|..+.++....+.|+|||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 3579999999999999998521 1111 124799999999998877889999999999999
Q ss_pred EEccCCeeeeEEeecC-ceeEEEEcc-CCCEEEEEeCCCcEEEEECCCCe-eeEEEecccccceEEEEEcCCCC-EEEEe
Q 017314 200 WDLHKGYCVNTIIFHS-NCNALAFSM-DGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHSLAAVTSISLSRSGN-IILTS 275 (373)
Q Consensus 200 wd~~~~~~~~~~~~~~-~~~~~~~~~-~g~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~l~s~ 275 (373)
||+.+++|..++.+|. +|.++.|+| .+.+|++|+.|++|++.|.|... .-..+.. .+.|-.+.|.|... .++++
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~--~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF--DGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe--ccceEEEEecCCCceeEEEe
Confidence 9999999999998654 599999999 46788999999999999998422 1122222 25788899998665 56777
Q ss_pred eCCCeEEEEEcccc-ceeeeeeecCCeeecCeeeeEECC-CCcEEEEEeCCCcEEEEEccCceE--EEEeccCCccEEEE
Q 017314 276 GRDNLHNLFDIRSL-EVCGSLRATGNRVASNWSRSCISP-DESYVAAGSADGSVYIWSISKADI--VRTLKEHTAPVLSC 351 (373)
Q Consensus 276 ~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~sgs~Dg~i~iwd~~~~~~--~~~l~~h~~~V~~~ 351 (373)
..||+++-+|+|.. +++-++..|...+.. +++++ ...+++++|.|+.|++|++..-.+ ++.-.---+...|.
T Consensus 349 tddG~v~~~D~R~~~~~vwt~~AHd~~ISg----l~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPGKPVWTLKAHDDEISG----LSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCF 424 (463)
T ss_pred cCCceEEeeecCCCCCceeEEEeccCCcce----EEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeec
Confidence 88999999999986 677788888776643 56654 346789999999999999865433 22111111335567
Q ss_pred EEcCCCC-cEEEEeCCCeEEEcC
Q 017314 352 SWSGLGK-PLASADKNGVVCVWT 373 (373)
Q Consensus 352 ~~s~~g~-~l~s~s~dg~i~iW~ 373 (373)
++.|+-. +||.||..+.++||+
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred ccCCCcceEEEecCccceEEEee
Confidence 7888754 778899999999996
No 155
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=3.8e-22 Score=179.84 Aligned_cols=269 Identities=16% Similarity=0.291 Sum_probs=201.5
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEee
Q 017314 90 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT 169 (373)
Q Consensus 90 ~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 169 (373)
.|+.++|-|||+.|+.+. +..+.+||.+.|..+.++++|...|.+++++.||..+++|+.|+.|.+|+..-...+ . .
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-k-Y 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-K-Y 90 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-e-e
Confidence 788999999999888766 457899999999999999999999999999999999999999999999986432211 1 2
Q ss_pred cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeee
Q 017314 170 GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL 249 (373)
Q Consensus 170 ~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~ 249 (373)
.|.+.|.|+.|+|. .+.++||+-. ..-+|...... +........+.+++|..||++++-|..||+|.+-+-.....+
T Consensus 91 SH~D~IQCMsFNP~-~h~LasCsLs-dFglWS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPI-THQLASCSLS-DFGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred ccCCeeeEeecCch-HHHhhhcchh-hccccChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence 59999999999985 5678888754 35678654332 222233456889999999999999999999998764332222
Q ss_pred -EEEecccccceEEEEEcCCCC-----EEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeE--ECCCCcEEEEE
Q 017314 250 -SEVAAHSLAAVTSISLSRSGN-----IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC--ISPDESYVAAG 321 (373)
Q Consensus 250 -~~~~~~~~~~v~~~~~~~~~~-----~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~l~sg 321 (373)
..-.+....+|.+++|+|... .++...-..++.++.+.. +.++ .... -.+.+.| +-|+|.|+..|
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Ig----k~r~--L~FdP~CisYf~NGEy~LiG 240 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIG----KDRA--LNFDPCCISYFTNGEYILLG 240 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeec----cccc--CCCCchhheeccCCcEEEEc
Confidence 222334457899999999653 455555555555554432 1111 1111 1222334 45899999999
Q ss_pred eCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEc
Q 017314 322 SADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372 (373)
Q Consensus 322 s~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW 372 (373)
+.|+.+.+|- ..|-.+.++......|+.++..|++++++.|..||+|-.|
T Consensus 241 Gsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 241 GSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred cCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehh
Confidence 9999999984 4566777777777889999999999999999999999765
No 156
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.2e-22 Score=174.18 Aligned_cols=231 Identities=16% Similarity=0.238 Sum_probs=192.5
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEEcCC--CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCee
Q 017314 130 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNS--GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC 207 (373)
Q Consensus 130 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~ 207 (373)
.+.|+++.|+|....+++|+.|++++||-+.. ...++.+.--.-++.+..|.|.....+++++.-+.+..||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 46899999999999999999999999998864 3455666556778889999986555899999999999999987754
Q ss_pred eeEEe--ec--CceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEE
Q 017314 208 VNTII--FH--SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL 283 (373)
Q Consensus 208 ~~~~~--~~--~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~ 283 (373)
.+.-. .. ..+....++|++++|+..+..|.|.+....+++.+..+... +.|..++|+.+++.|++++.++.|.+
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie--G~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE--GVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec--cEEeeEEEecCCcEEEEEcCCceEEE
Confidence 32211 11 13567889999999999999999999999999999888765 68999999999999999999999999
Q ss_pred EEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccC------ceEEEEeccCCccEEEEEEcCCC
Q 017314 284 FDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK------ADIVRTLKEHTAPVLSCSWSGLG 357 (373)
Q Consensus 284 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~------~~~~~~l~~h~~~V~~~~~s~~g 357 (373)
||++...+...+...+.... ...|.+++|.|||+||..|.|.|||..+ .++++.+..-...|+++.|+||+
T Consensus 371 ~nl~~~~~~~rf~D~G~v~g---ts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~ 447 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHG---TSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA 447 (514)
T ss_pred EecCCcceEEEEeecCccce---eeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch
Confidence 99999888887766554433 2468899999999999999999999653 46677777777889999999999
Q ss_pred CcEEEEeC
Q 017314 358 KPLASADK 365 (373)
Q Consensus 358 ~~l~s~s~ 365 (373)
+.||.+|.
T Consensus 448 qiLAiaS~ 455 (514)
T KOG2055|consen 448 QILAIASR 455 (514)
T ss_pred hhhhhhhh
Confidence 99988875
No 157
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.90 E-value=1.2e-21 Score=167.12 Aligned_cols=280 Identities=19% Similarity=0.341 Sum_probs=204.6
Q ss_pred CcEEEEEEcCCCC-EEEEeeCCCcEEEEeCCCCc---------eeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 017314 89 GGCASILFEYNSA-RLISGGQDKSIKLWDTNTGS---------LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 158 (373)
Q Consensus 89 ~~v~~~~~~~~~~-~l~s~s~D~~v~iwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd 158 (373)
.+|.++.|..++. .|+|||.|..||||-++.+. ....+.+|...|+.+.|+|+|..|++|+.++.|.+|-
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 5799999998776 99999999999999876432 2456788999999999999999999999999999997
Q ss_pred cC--------C--------CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc-eeEEE
Q 017314 159 VN--------S--------GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALA 221 (373)
Q Consensus 159 ~~--------~--------~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~-~~~~~ 221 (373)
.. + -.....+.+|.+.+..++|++ ++.++++++.|.++++||+..|........|.. +..++
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 65 2 124567889999999999998 688999999999999999999998877766654 78899
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCCeeeEEEe---------cccc-------------cceEEEEEcCCCCEEEEeeC--
Q 017314 222 FSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA---------AHSL-------------AAVTSISLSRSGNIILTSGR-- 277 (373)
Q Consensus 222 ~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~---------~~~~-------------~~v~~~~~~~~~~~l~s~~~-- 277 (373)
|.|-++++++=+.|...+.+.+...+.+.... .+.. .-..-++|+|+|.+|++...
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence 99999999999999888888776544433221 0101 12345788999998887532
Q ss_pred --CC-----eEEEEEccc-cceeeeeeecCCee-ecCeeeeE------------E-CCCCcEEEEEeCCCcEEEEEccCc
Q 017314 278 --DN-----LHNLFDIRS-LEVCGSLRATGNRV-ASNWSRSC------------I-SPDESYVAAGSADGSVYIWSISKA 335 (373)
Q Consensus 278 --d~-----~i~~~d~~~-~~~~~~~~~~~~~~-~~~~~~~~------------~-s~~~~~l~sgs~Dg~i~iwd~~~~ 335 (373)
++ +..+|+-.. .+++..+....... ...+..+. + -|-+..+|.++.+ .|+|||..+-
T Consensus 253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~ 331 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQTL 331 (434)
T ss_pred eeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEeccccc
Confidence 11 122333111 11122222111111 11111111 1 1344456777766 5999999988
Q ss_pred eEEEEecc-CCccEEEEEEcCCCCcEEEEeCCCeEE
Q 017314 336 DIVRTLKE-HTAPVLSCSWSGLGKPLASADKNGVVC 370 (373)
Q Consensus 336 ~~~~~l~~-h~~~V~~~~~s~~g~~l~s~s~dg~i~ 370 (373)
.++..... |...+++++||+||..|+..|.||.+-
T Consensus 332 ~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS 367 (434)
T KOG1009|consen 332 EPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCS 367 (434)
T ss_pred cceEEEeeeeeeeecceeecCCCcEEEEeccCCceE
Confidence 88776654 899999999999999999999999764
No 158
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.1e-21 Score=173.46 Aligned_cols=239 Identities=18% Similarity=0.288 Sum_probs=195.5
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-eEEEeecCCC-cEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCee
Q 017314 130 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR-VRHTLTGHTD-KVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC 207 (373)
Q Consensus 130 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~-~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~ 207 (373)
..+|.++||+.+.+.|+.+=.||+|-+|++..+= +...+.++.+ .|.+++|. ++..|+|.+.+|+|.-||+.++..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~--e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA--EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc--cCCeEEeecCCceEEEEecccCce
Confidence 4578999999999999999999999999998763 3456666654 58889997 356799999999999999999887
Q ss_pred eeEEeec-CceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEec-ccccceEEEEEcCCCCEEEEeeCCCeEEEEE
Q 017314 208 VNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA-HSLAAVTSISLSRSGNIILTSGRDNLHNLFD 285 (373)
Q Consensus 208 ~~~~~~~-~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d 285 (373)
...+... ..+.+++.+|.+..++.|+.||.+..++...++....... ...+++.+++|+|++..+++|+.|+.|++||
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD 182 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEE
Confidence 7666544 4488999999999999999999888888888776544322 2237899999999999999999999999999
Q ss_pred ccccceeeeeeecCC-----eeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcE
Q 017314 286 IRSLEVCGSLRATGN-----RVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPL 360 (373)
Q Consensus 286 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l 360 (373)
+.+............ .-...|+...+ ....|++|..-|+|.+||...+++++.+.-|.+.|.+++-++++.++
T Consensus 183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~v 260 (691)
T KOG2048|consen 183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRV 260 (691)
T ss_pred cCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeE
Confidence 998776553222111 22234554444 45689999999999999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEc
Q 017314 361 ASADKNGVVCVW 372 (373)
Q Consensus 361 ~s~s~dg~i~iW 372 (373)
.++|.|+.|.-+
T Consensus 261 fsaGvd~~ii~~ 272 (691)
T KOG2048|consen 261 FSAGVDPKIIQY 272 (691)
T ss_pred EEccCCCceEEE
Confidence 999999988643
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.90 E-value=1.8e-19 Score=166.63 Aligned_cols=286 Identities=34% Similarity=0.581 Sum_probs=224.8
Q ss_pred cceEEecCccCcEEEEEEcCCCCEEEEeeC-CCcEEEEeCCCCceeeeccccccceEEEEEcCCCC-EEEEEeCCCcEEE
Q 017314 79 TCKHKINAHEGGCASILFEYNSARLISGGQ-DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLYV 156 (373)
Q Consensus 79 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~i~i 156 (373)
.....+..|...|..+.|++++..+++++. |+.+++|++.++.....+.+|...|.+++++|++. .+++++.|++|++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 345677889999999999999999999986 99999999998888888889999999999999998 5555699999999
Q ss_pred EEcCCCeeEE-EeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCee-eeEEeec-CceeEEEEccCCCEEEEEe
Q 017314 157 WDVNSGRVRH-TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC-VNTIIFH-SNCNALAFSMDGQTIFSGH 233 (373)
Q Consensus 157 wd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~-~~~~~~~-~~~~~~~~~~~g~~l~sg~ 233 (373)
||...+.... .+.+|...+ ...|++. +..+++++.|+.+++||+..... ......| ..+.++.+.|++..+++++
T Consensus 226 wd~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 303 (466)
T COG2319 226 WDLSTGKLLRSTLSGHSDSV-VSSFSPD-GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303 (466)
T ss_pred EECCCCcEEeeecCCCCcce-eEeECCC-CCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee
Confidence 9998888877 688998885 4367764 47888999999999999986654 3333233 4588899999999998899
Q ss_pred CCCcEEEEECCCCeeeEEEe--cccccceEEEEEcCCCCEEEEe-eCCCeEEEEEccccceeeeeeecCCeeecCeeeeE
Q 017314 234 IDGNLRLWDIQTGKLLSEVA--AHSLAAVTSISLSRSGNIILTS-GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC 310 (373)
Q Consensus 234 ~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (373)
.|+.+++||..+........ .|. ..+..+.+.+++..++.+ ..|+.+.+|+............... .....
T Consensus 304 ~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 377 (466)
T COG2319 304 SDGTVRLWDLETGKLLSSLTLKGHE-GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-----VLSVS 377 (466)
T ss_pred CCCcEEEEEcCCCceEEEeeecccC-CceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-----EEEEE
Confidence 99999999998887766665 554 468888884332455555 6788899999887652111111111 22345
Q ss_pred ECCCCcEEEE-EeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 311 ISPDESYVAA-GSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 311 ~s~~~~~l~s-gs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
+++ ...+.. +..++.+.+|+............+...+..+.+++++..+++++.++.+++|+
T Consensus 378 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 378 FSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred ECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 666 444444 78999999999999888777665547899999999999999999999999984
No 160
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=8e-22 Score=170.52 Aligned_cols=250 Identities=16% Similarity=0.246 Sum_probs=183.7
Q ss_pred ceeeeccccccceEEEEEcCCCC--EEEEEeCCCcEEEEEcCCC----eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCC
Q 017314 121 SLSSTLYGCLGSVLDLAITHDNR--SVIAASSSNNLYVWDVNSG----RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD 194 (373)
Q Consensus 121 ~~~~~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D 194 (373)
......+-+.+.|++++|.|..+ .+++|...|+|-+||+.+. .-+..+..|..+|.++.|+|.+...+++.|+|
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 33445566788999999999875 6778888899999999533 23567788999999999999999999999999
Q ss_pred CcEEEEEccCCeeeeEEee---cCceeEEEEccCCCEEEEEeCCCcEEEEECCCCee-eEEEecccccceEEEEEcCCCC
Q 017314 195 RTLKVWDLHKGYCVNTIIF---HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL-LSEVAAHSLAAVTSISLSRSGN 270 (373)
Q Consensus 195 ~~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~ 270 (373)
|+||+=|++.+..-..+.. ......+.|+.+...++.|..=|...+||++++.. ...+..|. ..|++++++|...
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~-kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK-KKITSVALNPVCP 335 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhh-cccceeecCCCCc
Confidence 9999999986532111111 11245667777777777777777999999998765 55556666 5899999999776
Q ss_pred -EEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEcc----CceEEEEeccCC
Q 017314 271 -IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS----KADIVRTLKEHT 345 (373)
Q Consensus 271 -~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~----~~~~~~~l~~h~ 345 (373)
+|+++|.|++.+|||+|......+...+.-.....++..+|||++..|++-+.|..|+|||.. ...+..++. |.
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn 414 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HN 414 (498)
T ss_pred hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-cc
Confidence 689999999999999997654433011111222334557899998889999999999999983 333333332 22
Q ss_pred c------cEEEEEEcCCCCcEEEEeCCCeEEEc
Q 017314 346 A------PVLSCSWSGLGKPLASADKNGVVCVW 372 (373)
Q Consensus 346 ~------~V~~~~~s~~g~~l~s~s~dg~i~iW 372 (373)
. ......|.|+-.+|+.|---..|-|+
T Consensus 415 ~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~ 447 (498)
T KOG4328|consen 415 NRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVF 447 (498)
T ss_pred CcccccccchhheeCCCccEEEEeccCcceeEE
Confidence 1 24567899999999988766656554
No 161
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=7.8e-22 Score=164.03 Aligned_cols=244 Identities=20% Similarity=0.334 Sum_probs=182.8
Q ss_pred CccCcEEEEEEcCCC----CEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCC-CEEEEEeCCCcEEEEEcC
Q 017314 86 AHEGGCASILFEYNS----ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDN-RSVIAASSSNNLYVWDVN 160 (373)
Q Consensus 86 ~h~~~v~~~~~~~~~----~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~ 160 (373)
.|....+.++|+.|. .+||.||.-|.|||.|+.++++...+.+|.+.|..+.+.|+. ++++++|.|.+||+|++.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 367778888887653 379999999999999999999999999999999999999987 688999999999999999
Q ss_pred CCeeEEEe---ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEE------------------eecCc---
Q 017314 161 SGRVRHTL---TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI------------------IFHSN--- 216 (373)
Q Consensus 161 ~~~~~~~~---~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~------------------~~~~~--- 216 (373)
+..++..| .||.+.|.+++|++ ++.+|+||+.|.++++|++...+....+ ..+-.
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs 245 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS 245 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence 99988876 57999999999998 6779999999999999999743211000 00000
Q ss_pred --------eeEEEEccCCCEEEEEeCCCcEEEEEC-CCCeeeEEE-------------ecccccc--eEEEEEcCCCCEE
Q 017314 217 --------CNALAFSMDGQTIFSGHIDGNLRLWDI-QTGKLLSEV-------------AAHSLAA--VTSISLSRSGNII 272 (373)
Q Consensus 217 --------~~~~~~~~~g~~l~sg~~dg~i~iwd~-~~~~~~~~~-------------~~~~~~~--v~~~~~~~~~~~l 272 (373)
|-|+.|- |.++++=|-++.|..|.. .-++.+..+ .... .. ..-.+|+|-++.|
T Consensus 246 t~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~-c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 246 TTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM-CDIWFIRFAFDPWQKML 322 (385)
T ss_pred ccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCc-cceEEEEEeecHHHHHH
Confidence 1122221 578899888999999987 222221111 1111 11 2235678889999
Q ss_pred EEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEcc
Q 017314 273 LTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS 333 (373)
Q Consensus 273 ~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~ 333 (373)
+.+...+.+.+||++..+....-+.+.......+...+|+.||.+|+...+|++|.-||.-
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999999999998776422222222223344567899999999999999999999853
No 162
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.8e-22 Score=175.88 Aligned_cols=293 Identities=21% Similarity=0.292 Sum_probs=225.1
Q ss_pred ceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeec-cccccceEEEEEcCCC--CEEEEEeCCCcEEE
Q 017314 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL-YGCLGSVLDLAITHDN--RSVIAASSSNNLYV 156 (373)
Q Consensus 80 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~--~~l~s~s~d~~i~i 156 (373)
...+|.+|.|.|..+.|...|..|+|||.|..|.+||...++....+ .||...|..-.|-|.. ..+++++.||.+++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 34678899999999999999999999999999999999988776555 4677777666676643 57999999999998
Q ss_pred EEcC-CCee--EEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeec---C----ceeEEEEccCC
Q 017314 157 WDVN-SGRV--RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH---S----NCNALAFSMDG 226 (373)
Q Consensus 157 wd~~-~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~---~----~~~~~~~~~~g 226 (373)
=.+. ++.+ ...+..|.++|..++.-|....-|.|++.|+.+.-.|++.+.+...+... . ....++..|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 7653 3332 23456799999999999988889999999999999999987655444321 1 24678888866
Q ss_pred C-EEEEEeCCCcEEEEECCCCee------eEEEecc-----cccceEEEEEcCCCCEEEEeeCCCeEEEEEccccce---
Q 017314 227 Q-TIFSGHIDGNLRLWDIQTGKL------LSEVAAH-----SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV--- 291 (373)
Q Consensus 227 ~-~l~sg~~dg~i~iwd~~~~~~------~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~--- 291 (373)
. .+++|+.|-.+|+||.+.-.. +..+..+ ....|+++.|+.++.-|+++-.|-.|.+|.-.....
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 5 778999999999999875322 2333322 235699999998888888888888899985332211
Q ss_pred ---------eee-eeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEE
Q 017314 292 ---------CGS-LRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLA 361 (373)
Q Consensus 292 ---------~~~-~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~ 361 (373)
+.. +++|.+.-. .-....|.|...|++|||+-|.|.||+-.+++.+..+.+-...|+|+.=+|--..||
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~T-VKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLA 452 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRT-VKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLA 452 (559)
T ss_pred CCCcchhhccchhhcccccccc-cceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhh
Confidence 111 333322211 111234689999999999999999999999999988887555899999999889999
Q ss_pred EEeCCCeEEEcC
Q 017314 362 SADKNGVVCVWT 373 (373)
Q Consensus 362 s~s~dg~i~iW~ 373 (373)
|.|.|..|+||.
T Consensus 453 sSGid~DVKIWT 464 (559)
T KOG1334|consen 453 SSGIDHDVKIWT 464 (559)
T ss_pred ccCCccceeeec
Confidence 999999999995
No 163
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=2e-21 Score=164.29 Aligned_cols=236 Identities=22% Similarity=0.377 Sum_probs=176.8
Q ss_pred ccccceEEEEEcCCCC--EEEEEeCCCcEEEEEcCC----------------CeeEEEeecCCCcEEEEEEeeCCCCEEE
Q 017314 128 GCLGSVLDLAITHDNR--SVIAASSSNNLYVWDVNS----------------GRVRHTLTGHTDKVCAVDVSKISSRHVV 189 (373)
Q Consensus 128 ~~~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~----------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 189 (373)
.|.+.+.-+..++-++ +.++-+..|.|+|||+.. .++++++.+|...-++++|+|.....++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 4556666666666554 455556678999999842 2578899999999999999997777799
Q ss_pred EEeCCCcEEEEEccCCeee---eEEeec-CceeEEEEccCC-CEEEEEeCCCcEEEEECCCC---eeeEEEecccccceE
Q 017314 190 SAAYDRTLKVWDLHKGYCV---NTIIFH-SNCNALAFSMDG-QTIFSGHIDGNLRLWDIQTG---KLLSEVAAHSLAAVT 261 (373)
Q Consensus 190 s~s~D~~i~vwd~~~~~~~---~~~~~~-~~~~~~~~~~~g-~~l~sg~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~ 261 (373)
||..-+.|++|...+|.-. .-+..| ..|..++|||.. ..++|||.||+|+|||+|.+ .++.. ..|. +.|+
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~-sDVN 306 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHN-SDVN 306 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccC-Ccee
Confidence 9999999999998876532 112223 347889999964 56789999999999999988 23332 4554 7899
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEEccccc---eeeeeeecCCeeecCeeeeEECC-CCcEEEEEeCCCcEEEEEccCceE
Q 017314 262 SISLSRSGNIILTSGRDNLHNLFDIRSLE---VCGSLRATGNRVASNWSRSCISP-DESYVAAGSADGSVYIWSISKADI 337 (373)
Q Consensus 262 ~~~~~~~~~~l~s~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~sgs~Dg~i~iwd~~~~~~ 337 (373)
.|+|+....+|++|+.||+++|||+|..+ ++..+..|..++.+ +.++| +...|++++.|..|.|||+.-..-
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIts----ieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITS----IEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeE----EEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 99999999999999999999999998654 55677777766643 56777 457788889999999999863211
Q ss_pred --------EEE--------eccC--CccEEEEEEcCCC-CcEEEEeCCCeE
Q 017314 338 --------VRT--------LKEH--TAPVLSCSWSGLG-KPLASADKNGVV 369 (373)
Q Consensus 338 --------~~~--------l~~h--~~~V~~~~~s~~g-~~l~s~s~dg~i 369 (373)
... |=-| ...|..+.|++.- .+|++.+.||.-
T Consensus 383 ~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 383 EEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred hhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccccee
Confidence 111 1124 3468899999974 488999999853
No 164
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=2.4e-21 Score=164.70 Aligned_cols=230 Identities=24% Similarity=0.315 Sum_probs=176.9
Q ss_pred eeeccccccceEEEEEcCCC-CEEEEEeCCCcEEEEEcCCC-------eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCC
Q 017314 123 SSTLYGCLGSVLDLAITHDN-RSVIAASSSNNLYVWDVNSG-------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD 194 (373)
Q Consensus 123 ~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D 194 (373)
...+.||.++|.+++|+|-+ ..+++||.|.+|.||.+..+ +++..|.||...|--+.|+|...+.|+|++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 34577999999999999865 56889999999999998654 45778999999999999999999999999999
Q ss_pred CcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEE
Q 017314 195 RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILT 274 (373)
Q Consensus 195 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 274 (373)
.+|.+||+.+|..+-++.+...+.+++|+.||.++++.+.|..|||||.++++.+.+-..|....-.-.-|-.++.++-+
T Consensus 154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 99999999999988888866779999999999999999999999999999999999887777555555566677774444
Q ss_pred e---eCCCeEEEEEccccceeeeee--ecCCeeecCeeeeEECCCCcEEEE-EeCCCcEEEEEccCceE-EEEecc--CC
Q 017314 275 S---GRDNLHNLFDIRSLEVCGSLR--ATGNRVASNWSRSCISPDESYVAA-GSADGSVYIWSISKADI-VRTLKE--HT 345 (373)
Q Consensus 275 ~---~~d~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~s-gs~Dg~i~iwd~~~~~~-~~~l~~--h~ 345 (373)
| -.++.+-+||....+.-..+. ...+.+.. -.++||.+.+.. |-.|+.||.|.+....+ ++.|.. ..
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~----PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTSNGVLL----PFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccCCceEE----eeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 3 246678899987654322221 11222222 236788877654 56899999999987664 344432 22
Q ss_pred ccEEEEEEcCC
Q 017314 346 APVLSCSWSGL 356 (373)
Q Consensus 346 ~~V~~~~~s~~ 356 (373)
.+=..+.|-|.
T Consensus 310 epQRG~g~mPK 320 (472)
T KOG0303|consen 310 EPQRGMGFMPK 320 (472)
T ss_pred Ccccccccccc
Confidence 34455666553
No 165
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.9e-22 Score=191.96 Aligned_cols=240 Identities=18% Similarity=0.286 Sum_probs=188.3
Q ss_pred ccceEEEEEcCCCCE----EEEEeCCCcEEEEEcCC---C---eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 017314 130 LGSVLDLAITHDNRS----VIAASSSNNLYVWDVNS---G---RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 199 (373)
Q Consensus 130 ~~~v~~~~~~~~~~~----l~s~s~d~~i~iwd~~~---~---~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~v 199 (373)
....+.++|.+.+.. |+.|..||.|-+||... + ..+.++..|++.|..++|++..++.+++|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 456788999888765 78888999999999865 2 3466778899999999999988889999999999999
Q ss_pred EEccCCeeeeE---EeecCceeEEEEccCC-CEEEEEeCCCcEEEEECCCCeeeEEEecccc-cceEEEEEcCCCC-EEE
Q 017314 200 WDLHKGYCVNT---IIFHSNCNALAFSMDG-QTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL-AAVTSISLSRSGN-IIL 273 (373)
Q Consensus 200 wd~~~~~~~~~---~~~~~~~~~~~~~~~g-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~-~l~ 273 (373)
||+.+-....+ .....+|.+++|+..- ..|++++.+|.+.|||++..+.+..+..+.. ..+..+.|+|++. .|+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 99976332211 1234568899998654 4567899999999999999888877766643 3588999999875 455
Q ss_pred EeeCCC---eEEEEEccccc-eeeeeeecCCeeecCeeeeEECC-CCcEEEEEeCCCcEEEEEccCceEEEEeccCCccE
Q 017314 274 TSGRDN---LHNLFDIRSLE-VCGSLRATGNRVASNWSRSCISP-DESYVAAGSADGSVYIWSISKADIVRTLKEHTAPV 348 (373)
Q Consensus 274 s~~~d~---~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V 348 (373)
+++.|. .|.+||+|... ....++.|...+.. +.+.+ |..+|+|++.|++|.+|+..+++.+..+......+
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~Gils----lsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~ 299 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILS----LSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWC 299 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceee----eccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcce
Confidence 555543 68999998543 34455556554432 22333 56999999999999999999999999998877889
Q ss_pred EEEEEcCCCC-cEEEEeCCCeEEEcC
Q 017314 349 LSCSWSGLGK-PLASADKNGVVCVWT 373 (373)
Q Consensus 349 ~~~~~s~~g~-~l~s~s~dg~i~iW~ 373 (373)
..+.|.|..- .|+.++.||.|-|+.
T Consensus 300 fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 300 FDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred eeeeecCCCcchhhhheeccceeeee
Confidence 9999999765 889999999999873
No 166
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.5e-22 Score=191.24 Aligned_cols=243 Identities=22% Similarity=0.347 Sum_probs=193.8
Q ss_pred CcEEEEEEcCCCCE----EEEeeCCCcEEEEeCCC---C---ceeeeccccccceEEEEEcCCCC-EEEEEeCCCcEEEE
Q 017314 89 GGCASILFEYNSAR----LISGGQDKSIKLWDTNT---G---SLSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVW 157 (373)
Q Consensus 89 ~~v~~~~~~~~~~~----l~s~s~D~~v~iwd~~~---~---~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~i~iw 157 (373)
...+.++|.+.+.. |+.|..||.|.+||... + ..+.+...|.+.|..+.|++... .|++|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45667899887766 88889999999999865 2 23566778999999999999886 89999999999999
Q ss_pred EcCCCeeEEEee--cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc---eeEEEEccCCC-EEEE
Q 017314 158 DVNSGRVRHTLT--GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN---CNALAFSMDGQ-TIFS 231 (373)
Q Consensus 158 d~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~g~-~l~s 231 (373)
|+++-+.-.++. .-.+.|.+++|+....+.|++++.+|.+.|||++..+.+-.+..+.. +..++|+|++. .|++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 998765444442 24578999999987788899999999999999998877666555443 88999999864 4556
Q ss_pred EeCCC---cEEEEECCCC-eeeEEEecccccceEEEEEcCCC-CEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCe
Q 017314 232 GHIDG---NLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNW 306 (373)
Q Consensus 232 g~~dg---~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 306 (373)
++.|. .|.+||+|.. ..++.+..|. ..|.++.|++.+ .+|++++.|+.+.+|+..+++++..+...++.+.
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~-~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~f--- 300 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQ-RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCF--- 300 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccc-cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCccee---
Confidence 65544 5999999864 3455566676 789999999977 7999999999999999999999998877555443
Q ss_pred eeeEECCCC-cEEEEEeCCCcEEEEEccCce
Q 017314 307 SRSCISPDE-SYVAAGSADGSVYIWSISKAD 336 (373)
Q Consensus 307 ~~~~~s~~~-~~l~sgs~Dg~i~iwd~~~~~ 336 (373)
.+.|.|.. ..|++++-||.|.|+.+....
T Consensus 301 -dv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 301 -DVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred -eeeecCCCcchhhhheeccceeeeeeecCC
Confidence 24566644 588889999999999987643
No 167
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.5e-21 Score=160.96 Aligned_cols=270 Identities=17% Similarity=0.276 Sum_probs=192.5
Q ss_pred CEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCee--EEEeecCC-CcE
Q 017314 101 ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHD--NRSVIAASSSNNLYVWDVNSGRV--RHTLTGHT-DKV 175 (373)
Q Consensus 101 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~--~~~~~~h~-~~v 175 (373)
+.+|++-..|+|++||..+++.+..+.++...+..++|..+ ...+++|+.||+|++||++.... ...+.+|. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 57888889999999999999999999999999999999773 56799999999999999987643 34445565 455
Q ss_pred EEEEEeeCCCCEEEEEe----CCCcEEEEEccCCee-eeEE--eecCceeEEEEcc-CCCEEEEEeCCCcEEEEECCCCe
Q 017314 176 CAVDVSKISSRHVVSAA----YDRTLKVWDLHKGYC-VNTI--IFHSNCNALAFSM-DGQTIFSGHIDGNLRLWDIQTGK 247 (373)
Q Consensus 176 ~~~~~~~~~~~~~~s~s----~D~~i~vwd~~~~~~-~~~~--~~~~~~~~~~~~~-~g~~l~sg~~dg~i~iwd~~~~~ 247 (373)
.+++... ..+.+++|. .|-.|.+||++..+. ++.+ .++..++++.|+| +.+.|+|||.||.|.+||+....
T Consensus 121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 6666543 355566553 477899999997654 4443 2445699999999 56788999999999999997542
Q ss_pred ----eeEEEecccccceEEEEEcCCC-CEEEEeeCCCeEEEEEccccceeeeeeecCCe-------eecCeeeeEECC-C
Q 017314 248 ----LLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLEVCGSLRATGNR-------VASNWSRSCISP-D 314 (373)
Q Consensus 248 ----~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~s~-~ 314 (373)
++..+. + ...|..+.|..++ +.|.+-+......+|++..+.....+...... ..+.+..-+.+| +
T Consensus 200 EeDaL~~viN-~-~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~ 277 (376)
T KOG1188|consen 200 EEDALLHVIN-H-GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGD 277 (376)
T ss_pred chhhHHHhhc-c-cceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCC
Confidence 222222 2 2579999998877 35777788888999999876543333222110 111122223444 4
Q ss_pred CcEEEEEeC-CCcEEEEEcc---C---ceEEEEecc-CCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 315 ESYVAAGSA-DGSVYIWSIS---K---ADIVRTLKE-HTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 315 ~~~l~sgs~-Dg~i~iwd~~---~---~~~~~~l~~-h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
+..++.++. -+...++-+. + .+.+..+.+ |...|.++.|...+..+.|||.||.+.+|.
T Consensus 278 ~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 278 KDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred cceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 455555544 5666666543 2 344566776 667789999998899999999999999994
No 168
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.88 E-value=2.7e-19 Score=161.15 Aligned_cols=268 Identities=17% Similarity=0.287 Sum_probs=174.5
Q ss_pred EEEeeCCCcEEEEeCCC-Cc--eeeeccccccceEEEEEcCCCCEEEEEe-CCCcEEEEEcC-CCee--EEEeecCCCcE
Q 017314 103 LISGGQDKSIKLWDTNT-GS--LSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVN-SGRV--RHTLTGHTDKV 175 (373)
Q Consensus 103 l~s~s~D~~v~iwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~s-~d~~i~iwd~~-~~~~--~~~~~~h~~~v 175 (373)
+++.+.|+.|++||+.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|++. +++. ..... .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 34457799999999964 33 334443 335567789999999987765 47889999996 3432 22222 22345
Q ss_pred EEEEEeeCCCCEEEEEe-CCCcEEEEEccC-Ce---eeeEEeecCceeEEEEccCCCEEEEE-eCCCcEEEEECCCCeee
Q 017314 176 CAVDVSKISSRHVVSAA-YDRTLKVWDLHK-GY---CVNTIIFHSNCNALAFSMDGQTIFSG-HIDGNLRLWDIQTGKLL 249 (373)
Q Consensus 176 ~~~~~~~~~~~~~~s~s-~D~~i~vwd~~~-~~---~~~~~~~~~~~~~~~~~~~g~~l~sg-~~dg~i~iwd~~~~~~~ 249 (373)
..+.++| +++++++++ .++.|.+|++.+ +. .+..+.....+..++++|+|++++++ ..++.|.+||+.+...+
T Consensus 83 ~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 83 THISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred eEEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 6788887 466666655 589999999964 22 22222233446778899999998655 45699999999763322
Q ss_pred E-----EEecccccceEEEEEcCCCCEEEEeeC-CCeEEEEEccc----cceeeeeeecCCee-ecCe-eeeEECCCCcE
Q 017314 250 S-----EVAAHSLAAVTSISLSRSGNIILTSGR-DNLHNLFDIRS----LEVCGSLRATGNRV-ASNW-SRSCISPDESY 317 (373)
Q Consensus 250 ~-----~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~~~d~~~----~~~~~~~~~~~~~~-~~~~-~~~~~s~~~~~ 317 (373)
. ............+.|+|++++++++.. ++.+.+|++.. .+....+....... ...+ ..+.++|+|++
T Consensus 162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred cccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 1 111111234678999999999988776 89999999873 22233332111100 0111 12568999999
Q ss_pred EEEEe-CCCcEEEEEccCceEEEEeccCC---ccEEEEEEcCCCCcEEEEeC-CCeEEEcC
Q 017314 318 VAAGS-ADGSVYIWSISKADIVRTLKEHT---APVLSCSWSGLGKPLASADK-NGVVCVWT 373 (373)
Q Consensus 318 l~sgs-~Dg~i~iwd~~~~~~~~~l~~h~---~~V~~~~~s~~g~~l~s~s~-dg~i~iW~ 373 (373)
|+++. .++.|.+|++........+.+|. .....++|+|+|++|+++.. +++|.+|+
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 98875 47899999996543211222221 23457899999999987765 89999983
No 169
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.87 E-value=2.6e-20 Score=167.23 Aligned_cols=151 Identities=16% Similarity=0.186 Sum_probs=111.8
Q ss_pred HHHhcccccceeeccccCccccccccccccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeecccc
Q 017314 50 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC 129 (373)
Q Consensus 50 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 129 (373)
+.+|+.+.|..+.+|......... + +.....+.+-+-.|-++.|+|...-|+..+.-|+|+|||+.+++....+.+|
T Consensus 93 ~LLAT~S~D~~VKiW~lp~g~~q~--L-Sape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h 169 (1012)
T KOG1445|consen 93 ELLATCSRDEPVKIWKLPRGHSQK--L-SAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKTAVELSGH 169 (1012)
T ss_pred hhhhcccCCCeeEEEecCCCcccc--c-CCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCceeecccCC
Confidence 568888999988888654221111 1 1111223334456789999998776666677899999999999999999999
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CeeEEEeecCCCc-EEEEEEeeCCCCEEEEEeCC----CcEEEEEcc
Q 017314 130 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNS-GRVRHTLTGHTDK-VCAVDVSKISSRHVVSAAYD----RTLKVWDLH 203 (373)
Q Consensus 130 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~h~~~-v~~~~~~~~~~~~~~s~s~D----~~i~vwd~~ 203 (373)
...|.+..|+.||..|++++.|+.|+|||.+. ++++++.++|.+- -..+.|.. ....|+|.+.+ +.|++||.+
T Consensus 170 ~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~G-n~~rlisTGF~~~R~reV~~~Dtr 248 (1012)
T KOG1445|consen 170 TDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAG-NWERLISTGFTTKRIREVRAYDTR 248 (1012)
T ss_pred chhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeecc-chhhhhhcccchhhheeeeeeecc
Confidence 99999999999999999999999999999875 5678888888653 12344433 33457766665 678999976
Q ss_pred C
Q 017314 204 K 204 (373)
Q Consensus 204 ~ 204 (373)
.
T Consensus 249 ~ 249 (1012)
T KOG1445|consen 249 K 249 (1012)
T ss_pred c
Confidence 3
No 170
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.3e-21 Score=171.83 Aligned_cols=244 Identities=23% Similarity=0.309 Sum_probs=178.2
Q ss_pred eccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCC--------CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 017314 125 TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS--------GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRT 196 (373)
Q Consensus 125 ~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~ 196 (373)
++..|...+..++|.|-...|++++.|+++++|++.. -+++.+|.+|..+|.|+++.. .+.+++||+.||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCce
Confidence 4556777888899999999999999999999999932 257899999999999999876 6889999999999
Q ss_pred EEEEEccCCe----------eeeEEeecCc-eeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEeccc-ccceEEEE
Q 017314 197 LKVWDLHKGY----------CVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS-LAAVTSIS 264 (373)
Q Consensus 197 i~vwd~~~~~----------~~~~~~~~~~-~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~ 264 (373)
|+.|++.... ....+.+|.. +..+++|+....|++++.||++|+|+...... ..+.... .+...+++
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 9999765221 1233455554 56899999999999999999999999876554 2222211 12344555
Q ss_pred EcCCC-CEEEEeeCCCeEEEEEccccceeeeeee------cCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceE
Q 017314 265 LSRSG-NIILTSGRDNLHNLFDIRSLEVCGSLRA------TGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI 337 (373)
Q Consensus 265 ~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~ 337 (373)
+-... .+.++... ...+++...+....+.. .+.......+.+.-.|.+.+.+++-.|+.|+++|..++.+
T Consensus 447 ~~ss~~a~~~~s~~---~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 447 RTSSRPAHSLASFR---FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred eccchhHhhhhhcc---cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 54333 12222222 22333332222222211 1111112233444578889999999999999999999999
Q ss_pred EEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 338 VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 338 ~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
++....|...|+++++.|+|-+|++++.||.+++|.
T Consensus 524 l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 524 LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred chheeeccceecceeecCCCceEEeecCCceeehhh
Confidence 999999999999999999999999999999999994
No 171
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=1e-20 Score=165.20 Aligned_cols=259 Identities=15% Similarity=0.208 Sum_probs=191.6
Q ss_pred eeCCCcEEEEeCCCCceeeecccccc--ceEEEEEcCCCCEEEE--EeCCCcEEEEEcCCC--ee--EEEeecCCCcEEE
Q 017314 106 GGQDKSIKLWDTNTGSLSSTLYGCLG--SVLDLAITHDNRSVIA--ASSSNNLYVWDVNSG--RV--RHTLTGHTDKVCA 177 (373)
Q Consensus 106 ~s~D~~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s--~s~d~~i~iwd~~~~--~~--~~~~~~h~~~v~~ 177 (373)
+|...+++|||+........+..|.. .+.++.|+.... |++ .+.|..+++|.-... +. +....+. .-.|
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~C 84 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFC 84 (673)
T ss_pred eccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc--hHHH
Confidence 34445899999876544433333332 377777776654 443 456778999974332 22 2223332 3344
Q ss_pred EEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC-ceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEeccc
Q 017314 178 VDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS 256 (373)
Q Consensus 178 ~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 256 (373)
++... ...++++|+..++|+|||++...+.+.+..|. .++++.+.-...||++++..|.|-|..+.++....++....
T Consensus 85 v~~~s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 85 VACAS-QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred Hhhhh-cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC
Confidence 44433 35789999999999999999877777776664 58999999999999999999999999999998887887766
Q ss_pred ccceEEEEEcCCCCE-EEEeeCCCeEEEEEccccceeeeee-ecCCeeecCeeeeEECCCC-cEEEEEeCCCcEEEEEcc
Q 017314 257 LAAVTSISLSRSGNI-ILTSGRDNLHNLFDIRSLEVCGSLR-ATGNRVASNWSRSCISPDE-SYVAAGSADGSVYIWSIS 333 (373)
Q Consensus 257 ~~~v~~~~~~~~~~~-l~s~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~-~~l~sgs~Dg~i~iwd~~ 333 (373)
...|.-+.|+|..++ |.+++.+|.+.+||+....+...+. .|.- +...+||+|.. .+|++-+-|..|++||+.
T Consensus 164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsA----P~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSA----PCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccC----CcCcceecCCccceEEEecccceEEEeecc
Confidence 677889999998885 5568899999999998765544432 2222 22347899865 577889999999999999
Q ss_pred CceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 334 KADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 334 ~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
.......+. ...|..+++|+++|.+|+.|...|.|..||
T Consensus 240 s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 240 SQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred cccccceee-ecCCcceeeecCCceEEEeecCCceEEEEe
Confidence 877766664 345788999999999999999999998875
No 172
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=4.6e-20 Score=157.00 Aligned_cols=204 Identities=20% Similarity=0.319 Sum_probs=163.8
Q ss_pred EecCccCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCC-------ceeeeccccccceEEEEEcCCC-CEEEEEeCCCc
Q 017314 83 KINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTG-------SLSSTLYGCLGSVLDLAITHDN-RSVIAASSSNN 153 (373)
Q Consensus 83 ~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~ 153 (373)
.+.||.++|..+.|.| +...|||||.|.+|+||++..+ ..+..+.||...|--++|+|-. +.|++++.|++
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4679999999999998 4568999999999999998654 3356788999999999999976 57889999999
Q ss_pred EEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc--eeEEEEccCCCEEEE
Q 017314 154 LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFS 231 (373)
Q Consensus 154 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~g~~l~s 231 (373)
|.+||+.+|+.+.++. |.+.|.+++|+. ++.+++|.+.|+.|||||.+++..+..-..|.. ...+.|-.+|..+-+
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 9999999999888887 999999999987 688999999999999999999998877655543 345667778884444
Q ss_pred Ee---CCCcEEEEECCCCeee---EEEecccccceEEEEEcCCCCEEEEee-CCCeEEEEEccccc
Q 017314 232 GH---IDGNLRLWDIQTGKLL---SEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLE 290 (373)
Q Consensus 232 g~---~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~~~d~~~~~ 290 (373)
|- ++..+-+||..+.+.. .++.. ...|.-=-|+++.+++.-+| .|+.|+.|.+..-.
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDt--SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDT--SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccccccccceeccCcccccCcceeEEecc--CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 42 4778999998654332 23322 24566667899999877766 58899999876543
No 173
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.8e-19 Score=170.13 Aligned_cols=282 Identities=21% Similarity=0.336 Sum_probs=197.5
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccc---cceEEEEEcC--CCCEEEEEeCCCcEEEEEcC-C-
Q 017314 89 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCL---GSVLDLAITH--DNRSVIAASSSNNLYVWDVN-S- 161 (373)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~-~- 161 (373)
++-..+.|+|-...++++...-.|++||.+.++....+..+. ..|+++.+-. |..++++|+.||.||||+-- +
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 344567888888899999988899999999998877665443 4577777644 34579999999999999742 2
Q ss_pred ---CeeEEEe---ecC----CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc--eeEEEEc-cCCCE
Q 017314 162 ---GRVRHTL---TGH----TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN--CNALAFS-MDGQT 228 (373)
Q Consensus 162 ---~~~~~~~---~~h----~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~-~~g~~ 228 (373)
.+.+... .++ .+.-.-++|....+ +++++|.-+.|||||.++..+...+...+. +++++-+ +.|+.
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCce
Confidence 2233222 121 11123455655444 566566689999999999888887776655 3444332 35799
Q ss_pred EEEEeCCCcEEEEECCCCe---eeEEEecccc-cceEEEEEcCCCC-EEEEeeCCCeEEEEEccccceeeeeeecCCe-e
Q 017314 229 IFSGHIDGNLRLWDIQTGK---LLSEVAAHSL-AAVTSISLSRSGN-IILTSGRDNLHNLFDIRSLEVCGSLRATGNR-V 302 (373)
Q Consensus 229 l~sg~~dg~i~iwd~~~~~---~~~~~~~~~~-~~v~~~~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-~ 302 (373)
+++|..||.||+||.+... .+.....|.. ..|..+.+.+.|- .|++++.||.|.+||+|.......+...... .
T Consensus 1224 i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred EEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecccc
Confidence 9999999999999998643 3445555541 2388899988775 4999999999999999974222222111100 0
Q ss_pred ecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEecc-------CCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 303 ASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE-------HTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 303 ~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~-------h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
........++++...+|+|+. +.|+||++.. +.+..++. -.+++.+++|+|.--.+|.|+.|..|.||.
T Consensus 1304 Gs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred CccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 112344567889999999999 9999999864 33333332 245689999999988999999999999984
No 174
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=2.4e-19 Score=153.16 Aligned_cols=283 Identities=19% Similarity=0.256 Sum_probs=195.8
Q ss_pred HHhcccccceeeccccCccccccccccccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC--------C---
Q 017314 51 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTN--------T--- 119 (373)
Q Consensus 51 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~--------~--- 119 (373)
.++++..|.-++.|.-...........-.....|..|...|+++.|+|+|..|+||+.+|.|.+|-.. +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 67888888888887654432222111223345688999999999999999999999999999999765 2
Q ss_pred -----CceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCC
Q 017314 120 -----GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD 194 (373)
Q Consensus 120 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D 194 (373)
-.....+.+|...+.+++|+||+..+++++.|+++++||+..|+....+..|...|..++|.|. ..++++-|.|
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl-~qyv~s~s~d 186 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPL-NQYVASKSSD 186 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchh-hhhhhhhccC
Confidence 1234567789999999999999999999999999999999999999999999999999999984 6789999999
Q ss_pred CcEEEEEccCCeeeeEEe-------------------ecCc-----eeEEEEccCCCEEEEEeC----CCcE-----EEE
Q 017314 195 RTLKVWDLHKGYCVNTII-------------------FHSN-----CNALAFSMDGQTIFSGHI----DGNL-----RLW 241 (373)
Q Consensus 195 ~~i~vwd~~~~~~~~~~~-------------------~~~~-----~~~~~~~~~g~~l~sg~~----dg~i-----~iw 241 (373)
+..+.+.+...+.+.... +|.+ ...++|+|||..+++... ++.+ +++
T Consensus 187 r~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvf 266 (434)
T KOG1009|consen 187 RHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVF 266 (434)
T ss_pred cccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEee
Confidence 977777765433221111 1111 235789999999886431 2333 333
Q ss_pred ECCCC-eeeEEEecccccceEEEEEcC-----------------CCCEEEEeeCCCeEEEEEccccceeeeeeecCCeee
Q 017314 242 DIQTG-KLLSEVAAHSLAAVTSISLSR-----------------SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVA 303 (373)
Q Consensus 242 d~~~~-~~~~~~~~~~~~~v~~~~~~~-----------------~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 303 (373)
+-... ++...+.... .....+.++| -.+.+++-...+.+.+||..+.++.... .+...
T Consensus 267 srk~l~rP~~~lp~~~-k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v---~nihy 342 (434)
T KOG1009|consen 267 SRKDLKRPAARLPSPK-KPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVV---DNIHY 342 (434)
T ss_pred ccccccCceeecCCCC-cceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEE---eeeee
Confidence 32211 1222222211 2222233322 1123333334556889998876654433 33344
Q ss_pred cCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEE
Q 017314 304 SNWSRSCISPDESYVAAGSADGSVYIWSISKADIV 338 (373)
Q Consensus 304 ~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~ 338 (373)
......++++||.+|+..|.||...+--++..++-
T Consensus 343 ~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 343 SAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred eeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 55566889999999999999999888877766554
No 175
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=9.4e-20 Score=161.15 Aligned_cols=206 Identities=19% Similarity=0.291 Sum_probs=156.0
Q ss_pred EEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeec-cccccceEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 017314 82 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL-YGCLGSVLDLAITHD--NRSVIAASSSNNLYVWD 158 (373)
Q Consensus 82 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~s~s~d~~i~iwd 158 (373)
..|.||.|.|.++.|+.+|.+|+|||.|-.+.|||....+++..+ .||.+.|.++.|-|. ++.+++|+.|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 357899999999999999999999999999999999877777665 489999999999885 45899999999999999
Q ss_pred cCCC----------eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCe-eeeEEeec----------Cce
Q 017314 159 VNSG----------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-CVNTIIFH----------SNC 217 (373)
Q Consensus 159 ~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~-~~~~~~~~----------~~~ 217 (373)
+... +....+..|++.|..++..|..++.+.+++.||+|+-+|++... |......+ .+.
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 9742 34556778999999999988888999999999999999998632 21111111 235
Q ss_pred eEEEEccC-CCEEEEEeCCCcEEEEECCCC--------e----------eeEEEeccc-----------ccceEEEEEcC
Q 017314 218 NALAFSMD-GQTIFSGHIDGNLRLWDIQTG--------K----------LLSEVAAHS-----------LAAVTSISLSR 267 (373)
Q Consensus 218 ~~~~~~~~-g~~l~sg~~dg~i~iwd~~~~--------~----------~~~~~~~~~-----------~~~v~~~~~~~ 267 (373)
.++.++|. ..+|+.|+.|-..++||.+.. . ++..+...+ ...++-+.|+|
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnp 283 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNP 283 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECC
Confidence 68889995 557889999999999994321 0 122221111 01255678899
Q ss_pred CCCEEEEeeCCCeEEEEEcc
Q 017314 268 SGNIILTSGRDNLHNLFDIR 287 (373)
Q Consensus 268 ~~~~l~s~~~d~~i~~~d~~ 287 (373)
+|.-|+..-....+.+||+.
T Consensus 284 NGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 284 NGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred CCcEEEEeeCCeEEEEEeec
Confidence 98876665555567777753
No 176
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2e-19 Score=160.53 Aligned_cols=243 Identities=16% Similarity=0.242 Sum_probs=188.4
Q ss_pred eeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 017314 123 SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL 202 (373)
Q Consensus 123 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~ 202 (373)
...+.||.+.|.++...|.|.+|++|+.||+|+||.+.+|.++.++. -.+.|.+++|+|.....++..+....+-+-+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 44578999999999999999999999999999999999999998876 34689999999977666666665555544442
Q ss_pred cCCe-------------------------------------ee-eEEeecCceeEEEEccCCCEEEEEeCC---CcEEEE
Q 017314 203 HKGY-------------------------------------CV-NTIIFHSNCNALAFSMDGQTIFSGHID---GNLRLW 241 (373)
Q Consensus 203 ~~~~-------------------------------------~~-~~~~~~~~~~~~~~~~~g~~l~sg~~d---g~i~iw 241 (373)
.-|. -+ -.+.+...++.+.|+..|.||++..-+ ..|.|+
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 2110 01 112233457889999999999986543 458888
Q ss_pred ECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEE
Q 017314 242 DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG 321 (373)
Q Consensus 242 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg 321 (373)
++.......-+... .+.+..+.|+|...+|+.++.. .+++||+...+.+..+......+ +..+++|.|.-|+.|
T Consensus 552 QLSK~~sQ~PF~ks-kG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwi----S~msihp~GDnli~g 625 (733)
T KOG0650|consen 552 QLSKRKSQSPFRKS-KGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWI----SSMSIHPNGDNLILG 625 (733)
T ss_pred ecccccccCchhhc-CCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCeee----eeeeecCCCCeEEEe
Confidence 88765544444333 2678999999999999888664 58899998766655554322222 346789999999999
Q ss_pred eCCCcEEEEEccCc-eEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEc
Q 017314 322 SADGSVYIWSISKA-DIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372 (373)
Q Consensus 322 s~Dg~i~iwd~~~~-~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW 372 (373)
+.|+.+..+|+.-. ++.++++-|...|++|+|++.=..|++|+.||++.|+
T Consensus 626 s~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred cCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 99999999999754 5788899999999999999999999999999999886
No 177
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=9e-19 Score=144.74 Aligned_cols=215 Identities=23% Similarity=0.398 Sum_probs=146.5
Q ss_pred cccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----eeEEEeecCCCcEEEEEEeeC-CCCEEEEEeCCCcEEEEE
Q 017314 127 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG----RVRHTLTGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVWD 201 (373)
Q Consensus 127 ~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~-~~~~~~s~s~D~~i~vwd 201 (373)
.+|..-|+++.|.+.|+++++++.|++++|||.+.. .+....+.|.+.|..+.|.++ -+..+++||.|++++||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 367888999999999999999999999999997543 456677899999999998654 477889999999999997
Q ss_pred ccCC-------ee--eeEEe-ecCceeEEEEcc--CCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCC
Q 017314 202 LHKG-------YC--VNTII-FHSNCNALAFSM--DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG 269 (373)
Q Consensus 202 ~~~~-------~~--~~~~~-~~~~~~~~~~~~--~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 269 (373)
-... +- ..++. ..+.+..+.|.| -|-.+++++.||++|||+....-.+......+ ++.-+ .+|-+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~--Ei~~~-~~pp~ 166 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH--EIQNV-IDPPG 166 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh--hhhhc-cCCcc
Confidence 5211 11 11111 124588999998 47788999999999999876543332222211 11100 00111
Q ss_pred CEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCC-----CcEEEEEccCce----EEEE
Q 017314 270 NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-----GSVYIWSISKAD----IVRT 340 (373)
Q Consensus 270 ~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~D-----g~i~iwd~~~~~----~~~~ 340 (373)
+....+ ....|+..- -...+||.|+.+ +.++||...... .+.+
T Consensus 167 ~~~~~~--------------------------~CvsWn~sr--~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~ 218 (361)
T KOG2445|consen 167 KNKQPC--------------------------FCVSWNPSR--MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAE 218 (361)
T ss_pred cccCcc--------------------------eEEeecccc--ccCceEEEEcccCCccccceEEEEecCCcceeeeehh
Confidence 100000 000111000 134678888876 579999876532 4567
Q ss_pred eccCCccEEEEEEcCC-C---CcEEEEeCCCeEEEcC
Q 017314 341 LKEHTAPVLSCSWSGL-G---KPLASADKNGVVCVWT 373 (373)
Q Consensus 341 l~~h~~~V~~~~~s~~-g---~~l~s~s~dg~i~iW~ 373 (373)
|.+|+.+|++++|.|. | ..||+++.|| |+||.
T Consensus 219 L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~ 254 (361)
T KOG2445|consen 219 LPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFK 254 (361)
T ss_pred cCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEE
Confidence 8899999999999997 3 4789999999 99984
No 178
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=2.5e-18 Score=140.94 Aligned_cols=257 Identities=21% Similarity=0.380 Sum_probs=183.7
Q ss_pred CCCcEEEEeCCCCc--e-eeeccccccceEEEEEcCCCCEEEEEeCC--------CcEEEEEcCCC---------eeEEE
Q 017314 108 QDKSIKLWDTNTGS--L-SSTLYGCLGSVLDLAITHDNRSVIAASSS--------NNLYVWDVNSG---------RVRHT 167 (373)
Q Consensus 108 ~D~~v~iwd~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~l~s~s~d--------~~i~iwd~~~~---------~~~~~ 167 (373)
.|..|.+.++..+. + .+.|..|.+.|..++-+|-...+++.... ..+-||.+... +++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 36778877765432 2 35677788999999999877655543322 24679987642 22333
Q ss_pred ee-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCee-eeEEee------cCceeEEEEcc--CCCEEEEEeCCCc
Q 017314 168 LT-GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC-VNTIIF------HSNCNALAFSM--DGQTIFSGHIDGN 237 (373)
Q Consensus 168 ~~-~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~-~~~~~~------~~~~~~~~~~~--~g~~l~sg~~dg~ 237 (373)
+. .+-+.|.|+.|.|. +..+++-. |..|.+|++..+.. +..+.. .....+-+|+| ||+.+++. .|++
T Consensus 118 Ldteavg~i~cvew~Pn-s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~t 194 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPN-SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDST 194 (370)
T ss_pred CCHHHhCceeeEEEcCC-CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCc
Confidence 33 45568999999994 55565544 88999999987654 222221 12356678888 67777654 5899
Q ss_pred EEEEECCCCeeeEEEecccccceEEEEEcCCCC-EEEEeeCCCeEEEEEcccc-ceeeeeeecCCeeecCeeeeEECC-C
Q 017314 238 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN-IILTSGRDNLHNLFDIRSL-EVCGSLRATGNRVASNWSRSCISP-D 314 (373)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~-~ 314 (373)
++.||+++.+....+...+...|..+.|+|+-+ +|++||.|+.+++||.|.. .++.++..|...+ |. +-|.| .
T Consensus 195 l~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWv---W~-VRfn~~h 270 (370)
T KOG1007|consen 195 LQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWV---WA-VRFNPEH 270 (370)
T ss_pred EEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEE---EE-EEecCcc
Confidence 999999998888777766667899999999876 6889999999999999864 3455565555443 22 34555 5
Q ss_pred CcEEEEEeCCCcEEEEEccCc-----------------------------eEEEEeccCCccEEEEEEcCCCC-cEEEEe
Q 017314 315 ESYVAAGSADGSVYIWSISKA-----------------------------DIVRTLKEHTAPVLSCSWSGLGK-PLASAD 364 (373)
Q Consensus 315 ~~~l~sgs~Dg~i~iwd~~~~-----------------------------~~~~~l~~h~~~V~~~~~s~~g~-~l~s~s 364 (373)
.++|++||.|..|.+|....- ..+.++..|+.+|++++||.-.. .+|+-|
T Consensus 271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS 350 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS 350 (370)
T ss_pred ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence 688999999999999965320 12346678999999999998665 568889
Q ss_pred CCCeEEE
Q 017314 365 KNGVVCV 371 (373)
Q Consensus 365 ~dg~i~i 371 (373)
-||.+.|
T Consensus 351 YDGRviI 357 (370)
T KOG1007|consen 351 YDGRVII 357 (370)
T ss_pred cCceEEe
Confidence 9998876
No 179
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.83 E-value=4e-18 Score=163.49 Aligned_cols=293 Identities=14% Similarity=0.213 Sum_probs=201.4
Q ss_pred eEEecCccCcEEEEEEcCCC-CEEEEeeCCCcEEEEeCCCC-------ceeeeccccccceEEEEEcCCCCEEEEEeCCC
Q 017314 81 KHKINAHEGGCASILFEYNS-ARLISGGQDKSIKLWDTNTG-------SLSSTLYGCLGSVLDLAITHDNRSVIAASSSN 152 (373)
Q Consensus 81 ~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~ 152 (373)
...+..|...|..++.+++. .+++|||.||+||+||...- +...++......+..+...+.+..++.++.||
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence 44566688888888888765 89999999999999997531 12233334567888999999999999999999
Q ss_pred cEEEEEcCCC-------eeEEEeecCCCc-E-EEEEEeeCCCC-EEEEEeCCCcEEEEEccCCeeeeEE---eecCceeE
Q 017314 153 NLYVWDVNSG-------RVRHTLTGHTDK-V-CAVDVSKISSR-HVVSAAYDRTLKVWDLHKGYCVNTI---IFHSNCNA 219 (373)
Q Consensus 153 ~i~iwd~~~~-------~~~~~~~~h~~~-v-~~~~~~~~~~~-~~~s~s~D~~i~vwd~~~~~~~~~~---~~~~~~~~ 219 (373)
.|++.+++-. .+......+... + ...++...... .++.+..-+.|..||+++....... ..|.-+++
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence 9999998752 122222233322 2 23333322233 5667777888999999876543333 23456899
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCC---CEEEEee--CCCeEEEEEccccceeee
Q 017314 220 LAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG---NIILTSG--RDNLHNLFDIRSLEVCGS 294 (373)
Q Consensus 220 ~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~--~d~~i~~~d~~~~~~~~~ 294 (373)
++.+|.+++++.|+..|.+-+||+|-+..+..........++-+..+|-. ...++++ ..+.+.+|++.++.....
T Consensus 1201 i~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~v 1280 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTV 1280 (1431)
T ss_pred EEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEE
Confidence 99999999999999999999999998888777655555677777776643 3555544 467899999987754444
Q ss_pred eeec-CCe--------------eecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEE---------------------
Q 017314 295 LRAT-GNR--------------VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV--------------------- 338 (373)
Q Consensus 295 ~~~~-~~~--------------~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~--------------------- 338 (373)
+... ... ....-..+++...+.++.+|+.|+.||.||....+..
T Consensus 1281 l~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~ 1360 (1431)
T KOG1240|consen 1281 LWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLS 1360 (1431)
T ss_pred EEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcccc
Confidence 4332 100 0011112334445678899999999999997532111
Q ss_pred ---------------------------EEe--------ccCCccEEEEEEcCCC-CcEEEEeCCCeEEEcC
Q 017314 339 ---------------------------RTL--------KEHTAPVLSCSWSGLG-KPLASADKNGVVCVWT 373 (373)
Q Consensus 339 ---------------------------~~l--------~~h~~~V~~~~~s~~g-~~l~s~s~dg~i~iW~ 373 (373)
+.+ ..|..+|+++++--.. .+|+++|.||.|+||.
T Consensus 1361 ~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1361 TIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000 1477788888875543 4899999999999995
No 180
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=2.1e-18 Score=143.47 Aligned_cols=234 Identities=18% Similarity=0.284 Sum_probs=173.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCC-------e-----eEEEeec-CCCcEEEEEEe------eCCCCEEEEEeCCC
Q 017314 135 DLAITHDNRSVIAASSSNNLYVWDVNSG-------R-----VRHTLTG-HTDKVCAVDVS------KISSRHVVSAAYDR 195 (373)
Q Consensus 135 ~~~~~~~~~~l~s~s~d~~i~iwd~~~~-------~-----~~~~~~~-h~~~v~~~~~~------~~~~~~~~s~s~D~ 195 (373)
.+.|+|||..|++-+.|..+++|++... . ...+++- ....|...+|- .++.+++++.+.|.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 4689999999999999999999998531 0 1111111 12334444443 23577889999999
Q ss_pred cEEEEEccCCeeeeEEeec------CceeEEEEccCCCEEEEEeCCCcEEEEEC-CCCeeeEEE---ec---ccccceEE
Q 017314 196 TLKVWDLHKGYCVNTIIFH------SNCNALAFSMDGQTIFSGHIDGNLRLWDI-QTGKLLSEV---AA---HSLAAVTS 262 (373)
Q Consensus 196 ~i~vwd~~~~~~~~~~~~~------~~~~~~~~~~~g~~l~sg~~dg~i~iwd~-~~~~~~~~~---~~---~~~~~v~~ 262 (373)
-|++||.-+|+....+..- ...-+++|+|||..|++|. ...||++|+ +.|+-.... .. ...+.+.+
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc 212 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISC 212 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeee
Confidence 9999999998766554322 1246899999999999875 578999999 666432211 11 12367899
Q ss_pred EEEcCCCC-EEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeC-CCcEEEEEccC-ceEEE
Q 017314 263 ISLSRSGN-IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA-DGSVYIWSISK-ADIVR 339 (373)
Q Consensus 263 ~~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~-Dg~i~iwd~~~-~~~~~ 339 (373)
++|+|-.. .++.++..+.+-|+.-...+++..+-++...+.. +++.++|..|.+|+. |-.|-.||+.. ..++-
T Consensus 213 ~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvTh----L~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 213 FAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTH----LQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeee----EEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence 99999665 8899999999988887777777777777766654 789999999999874 67899999975 55677
Q ss_pred EeccCCc-cEEEE--EEcCCCCcEEEEeCCCeEEEcC
Q 017314 340 TLKEHTA-PVLSC--SWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 340 ~l~~h~~-~V~~~--~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
.|..|.+ .=-.+ ...|+|++||+|+.||.|++|+
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwd 325 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWD 325 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEe
Confidence 7877766 22334 4468899999999999999996
No 181
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=2.6e-18 Score=159.72 Aligned_cols=232 Identities=19% Similarity=0.179 Sum_probs=162.6
Q ss_pred CCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCee--EEEeecCCCcEEEEEEeeC
Q 017314 109 DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS---NNLYVWDVNSGRV--RHTLTGHTDKVCAVDVSKI 183 (373)
Q Consensus 109 D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d---~~i~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~ 183 (373)
+..|.+||..... ...+..+...+.+.+|+|||+.|+.++.+ ..|++||+.+++. +..+.+|. ....|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSP- 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSP- 257 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECC-
Confidence 5789999986554 45566777889999999999999888754 3699999988753 33344443 3567888
Q ss_pred CCCEEEEE-eCCCcEEEE--EccCCeeeeEEeecCceeEEEEccCCCEEEEE-eCCCcEEEEECCCC-eeeEEEeccccc
Q 017314 184 SSRHVVSA-AYDRTLKVW--DLHKGYCVNTIIFHSNCNALAFSMDGQTIFSG-HIDGNLRLWDIQTG-KLLSEVAAHSLA 258 (373)
Q Consensus 184 ~~~~~~s~-s~D~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg-~~dg~i~iwd~~~~-~~~~~~~~~~~~ 258 (373)
+++.++.+ +.++.+.|| |+.++...............+|+|||+.|+.+ ..+|..+||++... .....+ .+. .
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~-~ 335 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR-G 335 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC-C
Confidence 56666654 578877666 55555433222222346679999999987754 46788888887532 222222 222 2
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEcc--Cce
Q 017314 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS--KAD 336 (373)
Q Consensus 259 ~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~--~~~ 336 (373)
....|+|+|+.|+..+.++.+ +||+.+++... +..... . ....++|||++|+.++.+|.+.+|.+. ++.
T Consensus 336 --~~~~~SpDG~~ia~~~~~~i~-~~Dl~~g~~~~-lt~~~~-~----~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~ 406 (429)
T PRK01742 336 --YSAQISADGKTLVMINGDNVV-KQDLTSGSTEV-LSSTFL-D----ESPSISPNGIMIIYSSTQGLGKVLQLVSADGR 406 (429)
T ss_pred --CCccCCCCCCEEEEEcCCCEE-EEECCCCCeEE-ecCCCC-C----CCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 457899999999888877655 48987765432 211111 1 124689999999999999999988863 578
Q ss_pred EEEEeccCCccEEEEEEcCC
Q 017314 337 IVRTLKEHTAPVLSCSWSGL 356 (373)
Q Consensus 337 ~~~~l~~h~~~V~~~~~s~~ 356 (373)
....+..|.+.+...+|||-
T Consensus 407 ~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 407 FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ceEEccCCCCCCCCcccCCC
Confidence 88889889999999999984
No 182
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=4.6e-19 Score=152.38 Aligned_cols=195 Identities=19% Similarity=0.274 Sum_probs=151.5
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeec-
Q 017314 92 ASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTG- 170 (373)
Q Consensus 92 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~- 170 (373)
.+++|+.+|..|++|+.||++|||+............|.+.|.++.|+|||..|++-+.| ..+||+++++-.+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 678999999999999999999999988877777788899999999999999999999999 999999999965554442
Q ss_pred CCCc-EEEEEEeeCC--CCE--EEEEeCCCcEEEEEccCCe------eeeEEeecCceeEEEEccCCCEEEEEeCCCcEE
Q 017314 171 HTDK-VCAVDVSKIS--SRH--VVSAAYDRTLKVWDLHKGY------CVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLR 239 (373)
Q Consensus 171 h~~~-v~~~~~~~~~--~~~--~~s~s~D~~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~ 239 (373)
.++. ...+.|+... ..+ ++....-+.|+.||+.... ..+.+..+..+.++++++||++++.|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 1222 2233444321 122 2233445667777664221 111122234689999999999999999999999
Q ss_pred EEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q 017314 240 LWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR 287 (373)
Q Consensus 240 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~ 287 (373)
|++..+.+.++-+...+...|+.+.|+|+.+++++.+.|....+..+.
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 999999888887766666899999999999999999999988887654
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.2e-17 Score=132.36 Aligned_cols=198 Identities=22% Similarity=0.334 Sum_probs=151.1
Q ss_pred eEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCce----ee----ecccc-----ccceEEEEEcCCCCEEEE
Q 017314 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL----SS----TLYGC-----LGSVLDLAITHDNRSVIA 147 (373)
Q Consensus 81 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~----~~----~~~~~-----~~~v~~~~~~~~~~~l~s 147 (373)
.....+|.++++.++|. ...|++|+ ||.|+=|..+.... .. ...-| ...|+++-+.|..+.++.
T Consensus 55 iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~ 131 (325)
T KOG0649|consen 55 IVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF 131 (325)
T ss_pred eeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE
Confidence 34568999999999998 45778777 59999998754221 00 01111 235788899999999999
Q ss_pred EeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCcee---------
Q 017314 148 ASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCN--------- 218 (373)
Q Consensus 148 ~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~--------- 218 (373)
++.|+.++-||+++|+..++++||++.|.++.... ....++||+.||++|+||.++++++..+....+.+
T Consensus 132 AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~w 210 (325)
T KOG0649|consen 132 AGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKW 210 (325)
T ss_pred ecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCce
Confidence 99999999999999999999999999999997633 46689999999999999999999988775432211
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q 017314 219 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR 287 (373)
Q Consensus 219 ~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~ 287 (373)
-.++.-+..++++|+ ...+.+|.++..+....+... ..+..+.|..+ .++++|..+.+.-|.+.
T Consensus 211 igala~~edWlvCGg-Gp~lslwhLrsse~t~vfpip--a~v~~v~F~~d--~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 211 IGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFPIP--ARVHLVDFVDD--CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred eEEEeccCceEEecC-CCceeEEeccCCCceEEEecc--cceeEeeeecc--eEEEeccccceeeeeec
Confidence 134445666777765 457999999998888777664 56777888654 57788888888777654
No 184
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=1.2e-16 Score=143.91 Aligned_cols=242 Identities=14% Similarity=0.237 Sum_probs=160.0
Q ss_pred cCcEEEEEEcCCCCEEEEee-CCCcEEEEeCC-CCce--eeeccccccceEEEEEcCCCCEEEEEeC-CCcEEEEEcCC-
Q 017314 88 EGGCASILFEYNSARLISGG-QDKSIKLWDTN-TGSL--SSTLYGCLGSVLDLAITHDNRSVIAASS-SNNLYVWDVNS- 161 (373)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~s-~D~~v~iwd~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~s~-d~~i~iwd~~~- 161 (373)
.+....+.++|++++|+.++ .++.|.+|++. ++.. ..... ..+....++|+|+++++++++. ++.|.+|++++
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 35567789999999887665 58899999986 3332 22221 2234667999999999888775 78999999964
Q ss_pred C---eeEEEeecCCCcEEEEEEeeCCCCEE-EEEeCCCcEEEEEccCCeeee-------EEeecCceeEEEEccCCCEEE
Q 017314 162 G---RVRHTLTGHTDKVCAVDVSKISSRHV-VSAAYDRTLKVWDLHKGYCVN-------TIIFHSNCNALAFSMDGQTIF 230 (373)
Q Consensus 162 ~---~~~~~~~~h~~~v~~~~~~~~~~~~~-~s~s~D~~i~vwd~~~~~~~~-------~~~~~~~~~~~~~~~~g~~l~ 230 (373)
+ +....+.+ ......+.++|. ++++ ++...++.|.+||+.+...+. .......+..++|+|+|++++
T Consensus 113 g~~~~~~~~~~~-~~~~~~~~~~p~-g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ly 190 (330)
T PRK11028 113 GIPVAPIQIIEG-LEGCHSANIDPD-NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAY 190 (330)
T ss_pred CCCCCceeeccC-CCcccEeEeCCC-CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEE
Confidence 3 22333332 233556778874 5555 566678999999997632221 112234467899999999998
Q ss_pred EEeC-CCcEEEEECCC--Ce--eeEEEeccc-----ccceEEEEEcCCCCEEEEeeC-CCeEEEEEccccceeeeeeecC
Q 017314 231 SGHI-DGNLRLWDIQT--GK--LLSEVAAHS-----LAAVTSISLSRSGNIILTSGR-DNLHNLFDIRSLEVCGSLRATG 299 (373)
Q Consensus 231 sg~~-dg~i~iwd~~~--~~--~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~~~~~~~ 299 (373)
++.. +++|.+||+.. ++ .+..+.... ......+.++|++++++++.. ++.|.+|++........+..+.
T Consensus 191 v~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~ 270 (330)
T PRK11028 191 CVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQ 270 (330)
T ss_pred EEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEE
Confidence 8776 89999999973 32 233332211 012335889999999888865 6899999986433211221111
Q ss_pred CeeecCeeeeEECCCCcEEEEEeC-CCcEEEEEcc
Q 017314 300 NRVASNWSRSCISPDESYVAAGSA-DGSVYIWSIS 333 (373)
Q Consensus 300 ~~~~~~~~~~~~s~~~~~l~sgs~-Dg~i~iwd~~ 333 (373)
.....+ ....++|||++|++++. +++|.+|++.
T Consensus 271 ~~~~~p-~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 271 PTETQP-RGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eccccC-CceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 110111 23578999999988765 8999999875
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=7.6e-17 Score=129.33 Aligned_cols=267 Identities=15% Similarity=0.196 Sum_probs=183.8
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEeCCC---------C-ceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 017314 91 CASILFEYNSARLISGGQDKSIKLWDTNT---------G-SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN 160 (373)
Q Consensus 91 v~~~~~~~~~~~l~s~s~D~~v~iwd~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 160 (373)
|.+-+++|.+++|+.|+.+|.|.+..+++ + ..+....+|.+++..++|. ...|++|+ ||.|+-|..+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeeh
Confidence 34456888899999999999999998753 1 2234457899999999997 34556555 4999988764
Q ss_pred CCee--------EEEeecCC-----CcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc-eeEEEEccCC
Q 017314 161 SGRV--------RHTLTGHT-----DKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDG 226 (373)
Q Consensus 161 ~~~~--------~~~~~~h~-----~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~g 226 (373)
.... .....-|. ..|+++.+.|. .+.+++++.|+.+.-||+++|+..+++..|.. +-++.--...
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~-enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS-ENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccC-CCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 3211 11122233 34677777774 55677777999999999999999999999887 5566653445
Q ss_pred CEEEEEeCCCcEEEEECCCCeeeEEEeccc---------ccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeee
Q 017314 227 QTIFSGHIDGNLRLWDIQTGKLLSEVAAHS---------LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA 297 (373)
Q Consensus 227 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~ 297 (373)
..+++|+.||++|+||+++++.+..+.... ...|.+++. +..++++|+ .-...+|.++..+....++.
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFPI 245 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEec
Confidence 568899999999999999999988775432 123455554 445666554 44578999999888777765
Q ss_pred cCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCC-CcEEEEeCCCeEEEc
Q 017314 298 TGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLG-KPLASADKNGVVCVW 372 (373)
Q Consensus 298 ~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g-~~l~s~s~dg~i~iW 372 (373)
....... ..+...+++++....|.-|.+. |.+-..........++..|+..- ++|-.++..+.+.|.
T Consensus 246 pa~v~~v-------~F~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 246 PARVHLV-------DFVDDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ccceeEe-------eeecceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 4443322 2356678888888889999764 44444444333345566665443 466667777777664
No 186
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=5.6e-17 Score=150.54 Aligned_cols=260 Identities=18% Similarity=0.205 Sum_probs=180.9
Q ss_pred CCcEEEEeCCCCceeeeccccccceEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCee--EE----EeecCCCcEEEEEEe
Q 017314 109 DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDN-RSVIAASSSNNLYVWDVNSGRV--RH----TLTGHTDKVCAVDVS 181 (373)
Q Consensus 109 D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~--~~----~~~~h~~~v~~~~~~ 181 (373)
++.+.+|++...............|+++.|+|.. .+++.|..+|.|.+||+..+.. .. ....|..+|..+.|-
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 3579999998764444444567889999999866 5677888999999999987653 21 224688889888876
Q ss_pred eCC-CCEEEEEeCCCcEEEEEccCCee------eeEE-------eecCceeEEEEcc-CCCEEEEEeCCCcEEEEE---C
Q 017314 182 KIS-SRHVVSAAYDRTLKVWDLHKGYC------VNTI-------IFHSNCNALAFSM-DGQTIFSGHIDGNLRLWD---I 243 (373)
Q Consensus 182 ~~~-~~~~~s~s~D~~i~vwd~~~~~~------~~~~-------~~~~~~~~~~~~~-~g~~l~sg~~dg~i~iwd---~ 243 (373)
... +.-++++|.||.|..|+++.-.. .... .....+++++|.| +...++.|+.+|.|.-=+ .
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 532 23489999999999998763221 0001 1122367889987 556788999999987633 2
Q ss_pred CCCe-----eeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEcc-ccceeeeeeecCCeeecCeeeeEECCCC-c
Q 017314 244 QTGK-----LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR-SLEVCGSLRATGNRVASNWSRSCISPDE-S 316 (373)
Q Consensus 244 ~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~ 316 (373)
.... .......|. +.|+++.++|-+..++..+.|-++++|... ...+...+..+...+ ..+++||.- .
T Consensus 381 ~~~~~~~~~~~~~~~~h~-g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v----~~vaWSptrpa 455 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHI-GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYV----TDVAWSPTRPA 455 (555)
T ss_pred cccccccccccccccccC-cceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhcccee----eeeEEcCcCce
Confidence 2222 122333343 789999999987755554449999999876 444433333333222 235677754 6
Q ss_pred EEEEEeCCCcEEEEEccC--ceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 317 YVAAGSADGSVYIWSISK--ADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 317 ~l~sgs~Dg~i~iwd~~~--~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
.|+++..||.|.|||+.. ..++.+.+-+....+.+.|++.|+.|+.|+..|++++|+
T Consensus 456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 788899999999999865 344555555556667889999999999999999999874
No 187
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=2.2e-18 Score=148.21 Aligned_cols=194 Identities=23% Similarity=0.294 Sum_probs=144.4
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEEccCCee-eeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEec
Q 017314 176 CAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC-VNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA 254 (373)
Q Consensus 176 ~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 254 (373)
.+++++. ++..+++|+.||++|+|+..+... .....++.++.++.|+|||+.|++-+.| ..++|+.+++..+.....
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 4567766 567899999999999999654433 3344567789999999999999999999 899999999977666552
Q ss_pred -ccccceEEEEEcCCC---C--EEEEeeCCCeEEEEEccccceeeeeeecC-CeeecCeeeeEECCCCcEEEEEeCCCcE
Q 017314 255 -HSLAAVTSISLSRSG---N--IILTSGRDNLHNLFDIRSLEVCGSLRATG-NRVASNWSRSCISPDESYVAAGSADGSV 327 (373)
Q Consensus 255 -~~~~~v~~~~~~~~~---~--~l~s~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~sgs~Dg~i 327 (373)
........+.|+.++ . +.+....-+.++.||+..+.....++... ......++..++++||+++|.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 223456678888777 3 33334455677777765433211111100 0111134557889999999999999999
Q ss_pred EEEEccCceEEEEec-cCCccEEEEEEcCCCCcEEEEeCCCeEEE
Q 017314 328 YIWSISKADIVRTLK-EHTAPVLSCSWSGLGKPLASADKNGVVCV 371 (373)
Q Consensus 328 ~iwd~~~~~~~~~l~-~h~~~V~~~~~s~~g~~l~s~s~dg~i~i 371 (373)
.|++..+-+.++..+ .|...|+.+.|+||.+++++.+.|..+.|
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 999999988887765 59999999999999999999999987765
No 188
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.5e-16 Score=146.97 Aligned_cols=285 Identities=16% Similarity=0.231 Sum_probs=198.7
Q ss_pred CccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC--Cc--eeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 017314 86 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNT--GS--LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 161 (373)
Q Consensus 86 ~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 161 (373)
.|.-.+++.+++|+++++|+|-.||.|.+|.-.. +. ....+.=|...|.+++|+++|.+|++|+..+.+-+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 3666789999999999999999999999996432 11 1234455788999999999999999999999999999999
Q ss_pred CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEee---c---------CceeEEEEccCCCEE
Q 017314 162 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF---H---------SNCNALAFSMDGQTI 229 (373)
Q Consensus 162 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~---~---------~~~~~~~~~~~g~~l 229 (373)
++ ..-++--..+|..+.++| ++.+......|.+|.+-...+-....++.+ . .-...++++|.-+.+
T Consensus 283 ~~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~ 360 (792)
T KOG1963|consen 283 GK-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL 360 (792)
T ss_pred CC-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence 88 445555678899999997 566777777799999887643322222211 1 114568889976777
Q ss_pred EEEeCCCcEEEEECCCCeeeEEEecc-----c-----ccceEEEEEcCCCCEEEEee--------CC--CeEEEEEcccc
Q 017314 230 FSGHIDGNLRLWDIQTGKLLSEVAAH-----S-----LAAVTSISLSRSGNIILTSG--------RD--NLHNLFDIRSL 289 (373)
Q Consensus 230 ~sg~~dg~i~iwd~~~~~~~~~~~~~-----~-----~~~v~~~~~~~~~~~l~s~~--------~d--~~i~~~d~~~~ 289 (373)
+-.+..|.|.+||+-+.+.+.++... . .-.++.++.+..|.+++|.- .| ..+|+|-....
T Consensus 361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~ 440 (792)
T KOG1963|consen 361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN 440 (792)
T ss_pred eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence 77788999999999887766655321 1 12577788888898888763 22 24677865543
Q ss_pred ceeeeeeec-CCeeecCeeeeEE-CCCCc-EEEEEeCCCcEEEEEccCc----------eEEEEeccCCccEEEEEEcCC
Q 017314 290 EVCGSLRAT-GNRVASNWSRSCI-SPDES-YVAAGSADGSVYIWSISKA----------DIVRTLKEHTAPVLSCSWSGL 356 (373)
Q Consensus 290 ~~~~~~~~~-~~~~~~~~~~~~~-s~~~~-~l~sgs~Dg~i~iwd~~~~----------~~~~~l~~h~~~V~~~~~s~~ 356 (373)
...-.+... ..++...+...++ +|... .+++++.||.++||-+... .+...-.-|..++++++||.|
T Consensus 441 ~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 441 SKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD 520 (792)
T ss_pred cceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC
Confidence 322222110 1111111222333 33333 8999999999999988322 222222247889999999999
Q ss_pred CCcEEEEeCCCeEEEcC
Q 017314 357 GKPLASADKNGVVCVWT 373 (373)
Q Consensus 357 g~~l~s~s~dg~i~iW~ 373 (373)
|. +.++|.|++|.||+
T Consensus 521 Gs-lla~s~~~~Itiwd 536 (792)
T KOG1963|consen 521 GS-LLAVSFDDTITIWD 536 (792)
T ss_pred Cc-EEEEecCCEEEEec
Confidence 95 56678899999996
No 189
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=140.21 Aligned_cols=249 Identities=13% Similarity=0.221 Sum_probs=170.9
Q ss_pred ceEEecCccCcEEEEEEcC--CCCEEEEeeCCCcEEEEeCCCCceee--eccccc-cceEEEEEcCCCCEEEEEe----C
Q 017314 80 CKHKINAHEGGCASILFEY--NSARLISGGQDKSIKLWDTNTGSLSS--TLYGCL-GSVLDLAITHDNRSVIAAS----S 150 (373)
Q Consensus 80 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~--~~~~~~-~~v~~~~~~~~~~~l~s~s----~ 150 (373)
....+++|...+..+.|.. .+..+.+|+.||+||+||+.+..... .+.++. .+..+++....++.+++|. .
T Consensus 62 ~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s 141 (376)
T KOG1188|consen 62 LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRS 141 (376)
T ss_pred hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccC
Confidence 4566788888888999987 46789999999999999998765433 233444 4677777766777777764 3
Q ss_pred CCcEEEEEcCCCee-EE-EeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCe----eeeEEeecCceeEEEEcc
Q 017314 151 SNNLYVWDVNSGRV-RH-TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY----CVNTIIFHSNCNALAFSM 224 (373)
Q Consensus 151 d~~i~iwd~~~~~~-~~-~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~ 224 (373)
+-.+.+||++..+. +. -...|.+.|+++.|+|.+.+.++|||.||-|.|+|+.... ...++...+.+.++.|..
T Consensus 142 ~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~ 221 (376)
T KOG1188|consen 142 DASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLS 221 (376)
T ss_pred ceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeec
Confidence 56799999987654 33 3468999999999999999999999999999999997542 233344445688899988
Q ss_pred CC-CEEEEEeCCCcEEEEECCCCeeeEEEecccc------------cceEEEEEcCCCCEEEEeeC-CCeEEEEEccc--
Q 017314 225 DG-QTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL------------AAVTSISLSRSGNIILTSGR-DNLHNLFDIRS-- 288 (373)
Q Consensus 225 ~g-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~------------~~v~~~~~~~~~~~l~s~~~-d~~i~~~d~~~-- 288 (373)
++ +.|.+-+...+..+|+++.+.....+..... ..|.+ ....+...++.++. -+...++.+..
T Consensus 222 ~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~ 300 (376)
T KOG1188|consen 222 KKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTS 300 (376)
T ss_pred CCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecc
Confidence 77 4588888999999999998765443322110 01111 11223445555444 45555555442
Q ss_pred -c---ceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEc
Q 017314 289 -L---EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI 332 (373)
Q Consensus 289 -~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~ 332 (373)
+ .....+.++...+ ....+|...+.++.||++||.+.+|..
T Consensus 301 s~~~~~~~a~l~g~~~ei---VR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 301 SGSLLTEPAILQGGHEEI---VRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cccccCccccccCCcHHH---HHHHhhhcccceeeccCCCceEEEEec
Confidence 1 1122222222211 122456667889999999999999985
No 190
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.78 E-value=3.8e-18 Score=153.50 Aligned_cols=230 Identities=20% Similarity=0.315 Sum_probs=165.5
Q ss_pred eeCCCcEEEEeCCCC-ce----eeeccccccceEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC-------eeEEEeecCC
Q 017314 106 GGQDKSIKLWDTNTG-SL----SSTLYGCLGSVLDLAITH-DNRSVIAASSSNNLYVWDVNSG-------RVRHTLTGHT 172 (373)
Q Consensus 106 ~s~D~~v~iwd~~~~-~~----~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~-------~~~~~~~~h~ 172 (373)
+|.-|.|-||+++.. ++ +..+. ....|+++.|.| |...|+.++.|+.|++|.+..+ .+...+.+|.
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~ 677 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG 677 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeeccc
Confidence 355689999998753 22 11221 234688999987 4568999999999999998654 4567889999
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC-ceeEEEEccCCCEEEEEeCCCcEEEEECCCCee-eE
Q 017314 173 DKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL-LS 250 (373)
Q Consensus 173 ~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~-~~ 250 (373)
+.|+.+.|+|...+.++++++|-+|++||+.++.....+..|. .+..++|+|+|+.+++.+.||+|++|..+++.. ++
T Consensus 678 eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~ 757 (1012)
T KOG1445|consen 678 EKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY 757 (1012)
T ss_pred ceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc
Confidence 9999999999989999999999999999999887766676665 489999999999999999999999999987643 33
Q ss_pred EEecccccceEEEEEcCCCCEEEEeeCCC----eEEEEEccccceeeeeeecCCeeecCeeeeEECCCC-cEEEEEeCCC
Q 017314 251 EVAAHSLAAVTSISLSRSGNIILTSGRDN----LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE-SYVAAGSADG 325 (373)
Q Consensus 251 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~sgs~Dg 325 (373)
+-.+.-...-.-|.|.-+|+++++.|.|. .+.+||..+............ +.-..-.-.+.+|. .+|++|-.|.
T Consensus 758 Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD-vaps~LvP~YD~Ds~~lfltGKGD~ 836 (1012)
T KOG1445|consen 758 EGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD-VAPSPLVPHYDYDSNVLFLTGKGDR 836 (1012)
T ss_pred cCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeec-ccCccccccccCCCceEEEecCCCc
Confidence 32222223445677888999999888765 467787765431111110000 00000001245554 4678899999
Q ss_pred cEEEEEccCceE
Q 017314 326 SVYIWSISKADI 337 (373)
Q Consensus 326 ~i~iwd~~~~~~ 337 (373)
.|++|.+....+
T Consensus 837 ~v~~yEv~~esP 848 (1012)
T KOG1445|consen 837 FVNMYEVIYESP 848 (1012)
T ss_pred eEEEEEecCCCc
Confidence 999999866544
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=3.1e-16 Score=132.97 Aligned_cols=230 Identities=19% Similarity=0.278 Sum_probs=169.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCC--CcEEEEEccCCeeee
Q 017314 132 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD--RTLKVWDLHKGYCVN 209 (373)
Q Consensus 132 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D--~~i~vwd~~~~~~~~ 209 (373)
.+....|..+...|..|+.||+ ++|....-.. .+..-...+.-+..-. +..+++-.+.+ +.+++.+.+++..+.
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k--~~~~~~~~~~IvEmLF-SSSLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK--CFSKDTEGVSIVEMLF-SSSLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred ceeeeeeccceeEEEccCCCce-eEEecCchHH--hhcccCCCeEEEEeec-ccceeEEEecCCCceEEEEEcccCceEE
Confidence 3445557777777777777774 5666543222 1111122222222211 33455544444 458999999988888
Q ss_pred EEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecc--cccceEEEEEcCCCCEEEEee--CCCeEEEEE
Q 017314 210 TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH--SLAAVTSISLSRSGNIILTSG--RDNLHNLFD 285 (373)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~--~d~~i~~~d 285 (373)
.+.++..+.++.++ -+.|+++-.+. |.|||+++.++++++..- ....+.++++++.+.+++--+ ..|.+.+||
T Consensus 83 e~~fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d 159 (391)
T KOG2110|consen 83 EIFFPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFD 159 (391)
T ss_pred EEecCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEE
Confidence 88888888888775 45666665554 999999999999887554 334567777777777888643 357899999
Q ss_pred ccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCc-EEEEEccCceEEEEeccCC--ccEEEEEEcCCCCcEEE
Q 017314 286 IRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGS-VYIWSISKADIVRTLKEHT--APVLSCSWSGLGKPLAS 362 (373)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~-i~iwd~~~~~~~~~l~~h~--~~V~~~~~s~~g~~l~s 362 (373)
+.+.+.+..+..|...+.. ++|+|+|.+|||+|+.|+ |||+.+.+|+.+..|+.-. ..|.+++|||++++|+.
T Consensus 160 ~~nl~~v~~I~aH~~~lAa----lafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 160 TINLQPVNTINAHKGPLAA----LAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred cccceeeeEEEecCCceeE----EEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence 9999999999888877654 789999999999999996 8999999999999987543 45789999999999999
Q ss_pred EeCCCeEEEc
Q 017314 363 ADKNGVVCVW 372 (373)
Q Consensus 363 ~s~dg~i~iW 372 (373)
.|.-++|+|+
T Consensus 236 sS~TeTVHiF 245 (391)
T KOG2110|consen 236 SSNTETVHIF 245 (391)
T ss_pred ecCCCeEEEE
Confidence 9999999997
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=7.7e-17 Score=152.73 Aligned_cols=245 Identities=19% Similarity=0.315 Sum_probs=172.6
Q ss_pred cCcEEEEEEcC--CCCEEEEeeCCCcEEEEeCC-C----Cceeeecc-------ccccceEEEEEcCCCCEEEEEeCCCc
Q 017314 88 EGGCASILFEY--NSARLISGGQDKSIKLWDTN-T----GSLSSTLY-------GCLGSVLDLAITHDNRSVIAASSSNN 153 (373)
Q Consensus 88 ~~~v~~~~~~~--~~~~l~s~s~D~~v~iwd~~-~----~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~s~d~~ 153 (373)
...|+.+.+-. |...+++|+.||.||||+-- + .+++..+. +..+.=.-+.|.....+|++++.-..
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence 35688887754 55689999999999999742 2 22222221 11122233567777788888888999
Q ss_pred EEEEEcCCCeeEEEeecC-CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCee---eeEEeecC-c--eeEEEEccCC
Q 017314 154 LYVWDVNSGRVRHTLTGH-TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC---VNTIIFHS-N--CNALAFSMDG 226 (373)
Q Consensus 154 i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~---~~~~~~~~-~--~~~~~~~~~g 226 (373)
|+|||.+..++...+..- ..-|+++......++.++.|-.||.||+||.+.... +.....|. . +..+.+.+.|
T Consensus 1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence 999999988877766543 345677766655678999999999999999875432 33333333 2 6778888877
Q ss_pred CE-EEEEeCCCcEEEEECCCCeee--EEEeccc--ccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecC--
Q 017314 227 QT-IFSGHIDGNLRLWDIQTGKLL--SEVAAHS--LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATG-- 299 (373)
Q Consensus 227 ~~-l~sg~~dg~i~iwd~~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~-- 299 (373)
.. |++|+.||.|++||++..... ..+..|- .+..+++..++...++|+|+. +.|+||++.... ...++...
T Consensus 1269 ~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F 1346 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGF 1346 (1387)
T ss_pred CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCccc
Confidence 65 999999999999999974222 2222222 235999999999999999999 999999986422 22222211
Q ss_pred --CeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCc
Q 017314 300 --NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA 335 (373)
Q Consensus 300 --~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~ 335 (373)
..+. ....++|+|.--++|+|+.|.+|.||...+.
T Consensus 1347 ~~q~~g-s~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1347 MGQRIG-SVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ccCcCC-CcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 1111 2245779999999999999999999987654
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.4e-16 Score=146.07 Aligned_cols=269 Identities=20% Similarity=0.321 Sum_probs=203.1
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCeeEEEe
Q 017314 92 ASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR---SVIAASSSNNLYVWDVNSGRVRHTL 168 (373)
Q Consensus 92 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~s~s~d~~i~iwd~~~~~~~~~~ 168 (373)
..-.|++|++.++... +..|+||...|+.++..+.+|..+++++.+.|... ++++++.||+|++||...+.++.++
T Consensus 20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~ 98 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTF 98 (792)
T ss_pred cccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEE
Confidence 3456899999888765 56999999999999999999999999999877654 6789999999999997544322100
Q ss_pred --------------------------------------------------------------------------------
Q 017314 169 -------------------------------------------------------------------------------- 168 (373)
Q Consensus 169 -------------------------------------------------------------------------------- 168 (373)
T Consensus 99 ~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~ 178 (792)
T KOG1963|consen 99 DNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIV 178 (792)
T ss_pred ecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEE
Confidence
Q ss_pred -----------------------ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccC--C---eeeeEEeecCceeEE
Q 017314 169 -----------------------TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK--G---YCVNTIIFHSNCNAL 220 (373)
Q Consensus 169 -----------------------~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~--~---~~~~~~~~~~~~~~~ 220 (373)
..|+-.+++++++| .++++++|..||.|.+|.--. + .+..-.-++.+++++
T Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L 257 (792)
T KOG1963|consen 179 HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL 257 (792)
T ss_pred EeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEeccccccee
Confidence 01444567788887 578999999999999996432 1 111112234679999
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCC
Q 017314 221 AFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGN 300 (373)
Q Consensus 221 ~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~ 300 (373)
+|+++|.+|+||+..|.+-+|.+.+++ +++-..-.++|..+.++||+.+.+....|+.|.+....+.+...++.+...
T Consensus 258 ~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~ 335 (792)
T KOG1963|consen 258 SFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKP 335 (792)
T ss_pred EEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccC
Confidence 999999999999999999999999987 344443447899999999999999999999999998766655444433221
Q ss_pred e-------eecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEec-----------cCCccEEEEEEcCCCCcEEE
Q 017314 301 R-------VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLK-----------EHTAPVLSCSWSGLGKPLAS 362 (373)
Q Consensus 301 ~-------~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~-----------~h~~~V~~~~~s~~g~~l~s 362 (373)
. ...-...++++|.-+.++-.+.-|.|.+||+-+.+.+..+. .+.-++++++.+-.|.+++|
T Consensus 336 ~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT 415 (792)
T KOG1963|consen 336 PTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMAT 415 (792)
T ss_pred CCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEE
Confidence 1 11122346788877788889999999999998766554442 12345789999999999999
Q ss_pred Ee
Q 017314 363 AD 364 (373)
Q Consensus 363 ~s 364 (373)
+-
T Consensus 416 ~E 417 (792)
T KOG1963|consen 416 LE 417 (792)
T ss_pred ee
Confidence 74
No 194
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.77 E-value=7.9e-17 Score=132.38 Aligned_cols=250 Identities=20% Similarity=0.357 Sum_probs=161.1
Q ss_pred EEecCccCcEEEEEEcC---CCCEEEEeeC----CCcEEEEeC--CCCceee-eccccccceEEEEEcCCCC----EEEE
Q 017314 82 HKINAHEGGCASILFEY---NSARLISGGQ----DKSIKLWDT--NTGSLSS-TLYGCLGSVLDLAITHDNR----SVIA 147 (373)
Q Consensus 82 ~~~~~h~~~v~~~~~~~---~~~~l~s~s~----D~~v~iwd~--~~~~~~~-~~~~~~~~v~~~~~~~~~~----~l~s 147 (373)
.++.+| -..+++.|+. ...+|+.||. ...|.|-.+ ++++.+. .-+.|..+++.+.|.|+.. .|+
T Consensus 39 y~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL- 116 (364)
T KOG0290|consen 39 YTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL- 116 (364)
T ss_pred EEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh-
Confidence 344443 4677788872 2347888884 355665544 3333322 1246888999999999874 233
Q ss_pred EeCCCcEEEEEcCCCee----EEEe-----ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCcee
Q 017314 148 ASSSNNLYVWDVNSGRV----RHTL-----TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCN 218 (373)
Q Consensus 148 ~s~d~~i~iwd~~~~~~----~~~~-----~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~ 218 (373)
++.+..+|+|.+...+. ...+ ..+..++++++|+..+.+++.++|-|-|..|||++++
T Consensus 117 ATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~------------- 183 (364)
T KOG0290|consen 117 ATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG------------- 183 (364)
T ss_pred hcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeec-------------
Confidence 34455899999874221 1111 1233445555555555555555555555555555433
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCC-EEEEeeCCCeEEEEEccccceeeeeee
Q 017314 219 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN-IILTSGRDNLHNLFDIRSLEVCGSLRA 297 (373)
Q Consensus 219 ~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~~~ 297 (373)
.. +.+...+..|. .+|..++|...+. .+++.|.||.+++||+|..+....+ .
T Consensus 184 ---------------~~----------~~vkTQLIAHD-KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII-Y 236 (364)
T KOG0290|consen 184 ---------------VS----------GTVKTQLIAHD-KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII-Y 236 (364)
T ss_pred ---------------cc----------cceeeEEEecC-cceeEEEeccCccceEEEecCCCcEEEEEecccccceEE-e
Confidence 01 11233455565 7899999998654 7899999999999999987643322 2
Q ss_pred cCCeeecCeeeeEECC-CCcEEEEEeCC-CcEEEEEccC-ceEEEEeccCCccEEEEEEcCCC-CcEEEEeCCCeEEEcC
Q 017314 298 TGNRVASNWSRSCISP-DESYVAAGSAD-GSVYIWSISK-ADIVRTLKEHTAPVLSCSWSGLG-KPLASADKNGVVCVWT 373 (373)
Q Consensus 298 ~~~~~~~~~~~~~~s~-~~~~l~sgs~D-g~i~iwd~~~-~~~~~~l~~h~~~V~~~~~s~~g-~~l~s~s~dg~i~iW~ 373 (373)
....-.....+++.++ |-.|+|+-..| ..|.|.|+.. ..++..|++|.+.|++++|.|.. ..|+|+|.|..+-||+
T Consensus 237 E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 237 EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWD 316 (364)
T ss_pred cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEe
Confidence 2221122223344443 56788886655 4699999975 56789999999999999999975 5999999999999996
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=3.3e-17 Score=148.32 Aligned_cols=246 Identities=15% Similarity=0.257 Sum_probs=175.7
Q ss_pred ccccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEE
Q 017314 76 VPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLY 155 (373)
Q Consensus 76 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~ 155 (373)
......+++++|...|++++|+.||.+++||+.|..|.+|...-...+ -+.|...|.++.|+|-...|++++-.. .-
T Consensus 41 ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L--kYSH~D~IQCMsFNP~~h~LasCsLsd-Fg 117 (1081)
T KOG1538|consen 41 SDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL--KYSHNDAIQCMSFNPITHQLASCSLSD-FG 117 (1081)
T ss_pred CCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee--eeccCCeeeEeecCchHHHhhhcchhh-cc
Confidence 344567889999999999999999999999999999999986543322 246899999999999999999887653 56
Q ss_pred EEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEe---ecCceeEEEEccCC-----C
Q 017314 156 VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII---FHSNCNALAFSMDG-----Q 227 (373)
Q Consensus 156 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~g-----~ 227 (373)
+|......+.. . .....+.+++|.. ++.+++-|-.||||.+-+.........-. .++++.+++|+|.. .
T Consensus 118 lWS~~qK~V~K-~-kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~d 194 (1081)
T KOG1538|consen 118 LWSPEQKSVSK-H-KSSSRIICCSWTN-DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRND 194 (1081)
T ss_pred ccChhhhhHHh-h-hhheeEEEeeecC-CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccc
Confidence 78765433221 1 1234566777765 78899999999999998754333222222 23458899999853 3
Q ss_pred EEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCee
Q 017314 228 TIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS 307 (373)
Q Consensus 228 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 307 (373)
.++......++.++.+. |+.+..-..-. -...|+++.++|.+++.||.|+.+++|. |.+-..+++..... -+.
T Consensus 195 i~aV~DW~qTLSFy~Ls-G~~Igk~r~L~-FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~----WIW 267 (1081)
T KOG1538|consen 195 ILAVADWGQTLSFYQLS-GKQIGKDRALN-FDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDS----WIW 267 (1081)
T ss_pred eEEEEeccceeEEEEec-ceeecccccCC-CCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccce----eEE
Confidence 56677777777777664 33333211111 3467899999999999999999999985 33333344332222 223
Q ss_pred eeEECCCCcEEEEEeCCCcEEEEEccC
Q 017314 308 RSCISPDESYVAAGSADGSVYIWSISK 334 (373)
Q Consensus 308 ~~~~s~~~~~l~sgs~Dg~i~iwd~~~ 334 (373)
.+...|++++++.|+.||+|..|++..
T Consensus 268 tV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 268 TVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEEEccCCceEEEEEccCeeehhhhHH
Confidence 467899999999999999999999753
No 196
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.76 E-value=2.2e-15 Score=135.98 Aligned_cols=286 Identities=18% Similarity=0.205 Sum_probs=177.9
Q ss_pred eEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEe-CCCcEEEEEc
Q 017314 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDV 159 (373)
Q Consensus 81 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s-~d~~i~iwd~ 159 (373)
..++......-..+.|++||++++.++.|+.|.++|+.+++.+.++..... ..++++++||++++++. ..+++.++|.
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~ 107 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDA 107 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEecc
Confidence 445554433334578999999999999999999999999999888876544 56799999999988765 6789999999
Q ss_pred CCCeeEEEeecC-------CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeee--eEEeecCceeEEEEccCCCEEE
Q 017314 160 NSGRVRHTLTGH-------TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV--NTIIFHSNCNALAFSMDGQTIF 230 (373)
Q Consensus 160 ~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~g~~l~ 230 (373)
++.+++..+... ...+.++..++....++++--.-+.|-+-|......+ ..+..........|+|++++++
T Consensus 108 ~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 108 ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFL 187 (369)
T ss_dssp TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceee
Confidence 999988877643 2356667666644334444444477777787654333 2333334467789999999987
Q ss_pred EE-eCCCcEEEEECCCCeeeEEEeccc---ccceEEEEEcCC----------CCEEEEeeCCCeEEEEEccccceeeeee
Q 017314 231 SG-HIDGNLRLWDIQTGKLLSEVAAHS---LAAVTSISLSRS----------GNIILTSGRDNLHNLFDIRSLEVCGSLR 296 (373)
Q Consensus 231 sg-~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~----------~~~l~s~~~d~~i~~~d~~~~~~~~~~~ 296 (373)
.+ ..+..|-++|..+++.+..+.... ..+...+- +|. +...++.-....+.+||...++.+.++.
T Consensus 188 va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~p-hp~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~ 266 (369)
T PF02239_consen 188 VAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFP-HPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIP 266 (369)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEE-ETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE
T ss_pred ecccccceeEEEeeccceEEEEeecccccccccccccc-CCCcceEEeeccccceecccccCCccccchhhcCeEEEEEE
Confidence 65 556789999999988776653311 12233221 221 2222222222244568888888888888
Q ss_pred ecCCeeecCeeeeEECCCCcEEEEE----eCCCcEEEEEccCceEEEEeccCC-ccEEEEEEcCCCCcEEEE--eCCCeE
Q 017314 297 ATGNRVASNWSRSCISPDESYVAAG----SADGSVYIWSISKADIVRTLKEHT-APVLSCSWSGLGKPLASA--DKNGVV 369 (373)
Q Consensus 297 ~~~~~~~~~~~~~~~s~~~~~l~sg----s~Dg~i~iwd~~~~~~~~~l~~h~-~~V~~~~~s~~g~~l~s~--s~dg~i 369 (373)
..+..+. +..+|+++++... ...++|.++|..+.+.+..+.... ..+..+.|+++|+++..+ ..+|.|
T Consensus 267 ~~G~glF-----i~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i 341 (369)
T PF02239_consen 267 TQGGGLF-----IKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAI 341 (369)
T ss_dssp -SSSS-------EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEE
T ss_pred CCCCcce-----eecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEE
Confidence 7665532 3468999999988 455899999999998888876432 358999999999966444 334468
Q ss_pred EEcC
Q 017314 370 CVWT 373 (373)
Q Consensus 370 ~iW~ 373 (373)
.|||
T Consensus 342 ~v~D 345 (369)
T PF02239_consen 342 VVYD 345 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=9.1e-15 Score=124.14 Aligned_cols=234 Identities=17% Similarity=0.208 Sum_probs=167.1
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCeeEEE
Q 017314 90 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN--NLYVWDVNSGRVRHT 167 (373)
Q Consensus 90 ~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~ 167 (373)
.+..+.|+.+...|..|+.||. +++..+..............|..+-|+. .+++..+.+. .+++++...+..+-.
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe 83 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICE 83 (391)
T ss_pred ceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEE
Confidence 4555668899988999998886 6776654332111111122344455553 3555555444 488888877665544
Q ss_pred eecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeec-Cc---eeEEEEccCCCEEE--EEeCCCcEEEE
Q 017314 168 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SN---CNALAFSMDGQTIF--SGHIDGNLRLW 241 (373)
Q Consensus 168 ~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~-~~---~~~~~~~~~g~~l~--sg~~dg~i~iw 241 (373)
+. ...+|.+|.++. . .++.+=.+ .|.|||++.-+.++++... .+ +.++++++.+.+++ .....|.|.+|
T Consensus 84 ~~-fpt~IL~VrmNr--~-RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 84 IF-FPTSILAVRMNR--K-RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred Ee-cCCceEEEEEcc--c-eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 43 345677777653 3 45545444 3999999998888887543 22 34455555566777 34457899999
Q ss_pred ECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCe-EEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEE
Q 017314 242 DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL-HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAA 320 (373)
Q Consensus 242 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 320 (373)
|+.+.+.+..+..|. +.+.+++|+++|.+||+++..|+ |++|.+..++.+.+|+.-.. ...+..++|+||+++|++
T Consensus 159 d~~nl~~v~~I~aH~-~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 159 DTINLQPVNTINAHK-GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--PVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred EcccceeeeEEEecC-CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--eeEEEEEEECCCCCeEEE
Confidence 999999999999887 89999999999999999999876 79999999988888875333 344556889999999999
Q ss_pred EeCCCcEEEEEccC
Q 017314 321 GSADGSVYIWSISK 334 (373)
Q Consensus 321 gs~Dg~i~iwd~~~ 334 (373)
.|+.++|.||.+..
T Consensus 236 sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 236 SSNTETVHIFKLEK 249 (391)
T ss_pred ecCCCeEEEEEecc
Confidence 99999999998764
No 198
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=6.1e-19 Score=162.92 Aligned_cols=236 Identities=22% Similarity=0.360 Sum_probs=187.4
Q ss_pred eeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 017314 123 SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL 202 (373)
Q Consensus 123 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~ 202 (373)
++.+.+|.+.|.|+.|...|.++++|+.|..++||..+++.++.++.||...++.++++. ....++++|.|..|++|-+
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEec
Confidence 345778999999999999999999999999999999999999999999999999999875 4556789999999999999
Q ss_pred cCCeeeeEEeecC-ceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEE---EecccccceEEEEEcCCCCEEEEeeCC
Q 017314 203 HKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE---VAAHSLAAVTSISLSRSGNIILTSGRD 278 (373)
Q Consensus 203 ~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~s~~~d 278 (373)
..+.++..+..|. .+++++|+|-. +.+.||++++||.+-.-.+.. .......-+.++.|...+.-+++++.|
T Consensus 262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence 9999888777775 58999999965 778999999999982111111 111122457788888888899999999
Q ss_pred CeEEEEEccccceeeeeeecCCeeecCeeeeEE-CCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCC
Q 017314 279 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI-SPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLG 357 (373)
Q Consensus 279 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g 357 (373)
+....|.+....... .... + +.. +-...+.+++-.+-.+.+|++.+|..++.+.+|..++..+.++|-+
T Consensus 338 ~ea~n~e~~~l~~~~------~~li--f--~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn 407 (1113)
T KOG0644|consen 338 GEARNHEFEQLAWRS------NLLI--F--VTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN 407 (1113)
T ss_pred cccccchhhHhhhhc------cceE--E--EeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC
Confidence 988887654322111 1000 0 001 1123577778888899999999999999999999999999999976
Q ss_pred C-cEEEEeCCCeEEEcC
Q 017314 358 K-PLASADKNGVVCVWT 373 (373)
Q Consensus 358 ~-~l~s~s~dg~i~iW~ 373 (373)
. ...+++.||...||+
T Consensus 408 ~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 408 PRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred cHhhhhccCCCceEeee
Confidence 5 557889999999996
No 199
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=1.3e-16 Score=131.08 Aligned_cols=206 Identities=22% Similarity=0.322 Sum_probs=154.6
Q ss_pred ccceEEec-CccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCce-eeecc-----ccccceEEEEEcC--CCCEEEEE
Q 017314 78 STCKHKIN-AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL-SSTLY-----GCLGSVLDLAITH--DNRSVIAA 148 (373)
Q Consensus 78 ~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~s~ 148 (373)
..|...|. .|-+.|.|+.|.|++..|++-. |..|.+|++..+.. +..+. .+....++-+|+| |++. +..
T Consensus 112 lE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnq-v~t 189 (370)
T KOG1007|consen 112 LECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQ-VAT 189 (370)
T ss_pred hhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccce-EEE
Confidence 34444454 5667999999999999998866 89999999987755 22221 2344567778887 4554 456
Q ss_pred eCCCcEEEEEcCCCeeEEEe-ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCC-eeeeEEeecCc-eeEEEEccC
Q 017314 149 SSSNNLYVWDVNSGRVRHTL-TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFHSN-CNALAFSMD 225 (373)
Q Consensus 149 s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~-~~~~~~~~~~~-~~~~~~~~~ 225 (373)
..|++++.||+++......+ .+|...|..++|+|....+|+||+.||.||+||.+.. .++.++..|+. +.++.|+|.
T Consensus 190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~ 269 (370)
T KOG1007|consen 190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPE 269 (370)
T ss_pred eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCc
Confidence 77899999999987765555 4788999999999988899999999999999999854 45666666654 889999994
Q ss_pred -CCEEEEEeCCCcEEEEECCCCe-----------------------------eeEEEecccccceEEEEEcCCCC-EEEE
Q 017314 226 -GQTIFSGHIDGNLRLWDIQTGK-----------------------------LLSEVAAHSLAAVTSISLSRSGN-IILT 274 (373)
Q Consensus 226 -g~~l~sg~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~-~l~s 274 (373)
.++|++|+.|..|.+|....-. .+.++..|. ..|++++|+.-.. ++++
T Consensus 270 hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE-DSVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 270 HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE-DSVYALAWSSADPWIFAS 348 (370)
T ss_pred cceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc-cceEEEeeccCCCeeEEE
Confidence 5677899999999999653210 123444454 6899999987655 5677
Q ss_pred eeCCCeEEEEEc
Q 017314 275 SGRDNLHNLFDI 286 (373)
Q Consensus 275 ~~~d~~i~~~d~ 286 (373)
-+.||.+.|-.+
T Consensus 349 LSYDGRviIs~V 360 (370)
T KOG1007|consen 349 LSYDGRVIISSV 360 (370)
T ss_pred eccCceEEeecC
Confidence 788988866544
No 200
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.75 E-value=2.6e-16 Score=129.38 Aligned_cols=200 Identities=19% Similarity=0.303 Sum_probs=151.1
Q ss_pred CccCcEEEEEEcCCCC-----EEEEeeCCCcEEEEeCCCC--ce--eee-----ccccccceEEEEEcC-CCCEEEEEeC
Q 017314 86 AHEGGCASILFEYNSA-----RLISGGQDKSIKLWDTNTG--SL--SST-----LYGCLGSVLDLAITH-DNRSVIAASS 150 (373)
Q Consensus 86 ~h~~~v~~~~~~~~~~-----~l~s~s~D~~v~iwd~~~~--~~--~~~-----~~~~~~~v~~~~~~~-~~~~l~s~s~ 150 (373)
.|..+++.+.|.|+.. +|||.| ..+|+|.+... +. ... -..+..++++..|+. |.+++.++|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 5888999999999863 555544 48999988632 11 111 123456888888865 4578889999
Q ss_pred CCcEEEEEcCCCe---eEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEee-----cCceeEEEE
Q 017314 151 SNNLYVWDVNSGR---VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-----HSNCNALAF 222 (373)
Q Consensus 151 d~~i~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~-----~~~~~~~~~ 222 (373)
|-|+.|||++++. +...+-+|..+|..++|...+...++|.|.||++|++|++.-... ++.. +.....++|
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS-TIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS-TIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc-eEEecCCCCCCcceeecc
Confidence 9999999999873 466788999999999999877788999999999999999865322 2222 123456777
Q ss_pred cc-CCCEEEEEeCC-CcEEEEECCCC-eeeEEEecccccceEEEEEcCCC-CEEEEeeCCCeEEEEEcccc
Q 017314 223 SM-DGQTIFSGHID-GNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSL 289 (373)
Q Consensus 223 ~~-~g~~l~sg~~d-g~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~ 289 (373)
++ |-+++++-.+| ..|.|.|++.. ..+..+..|. +.|+.++|.|.. ..|.+||.|..+.+||+...
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~-a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQ-ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCc-ccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 76 45667765544 46999999864 4566778886 899999999964 58999999999999999753
No 201
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=3.3e-16 Score=145.65 Aligned_cols=209 Identities=19% Similarity=0.178 Sum_probs=144.5
Q ss_pred CCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCC---CcEEEEEccCCeeeeEEeecCceeEEEEccCCC
Q 017314 151 SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD---RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQ 227 (373)
Q Consensus 151 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~ 227 (373)
+..|.+||..... ...+..|...+....|+| +++.++..+.+ ..|.+||+.++...............+|+|||+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCC
Confidence 4689999986654 456777888899999998 56777776654 469999998875432222222345689999999
Q ss_pred EEEEEe-CCCcEEEE--ECCCCeeeEEEecccccceEEEEEcCCCCEEEEee-CCCeEEEEEccccceeeeeeecCCeee
Q 017314 228 TIFSGH-IDGNLRLW--DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEVCGSLRATGNRVA 303 (373)
Q Consensus 228 ~l~sg~-~dg~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~ 303 (373)
.|+.++ .+|.+.|| |+.+++. ..+..+. ..+.+..|+|||+.|+..+ .++...+|++...........+..
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~-~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--- 335 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGTP-SQLTSGA-GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--- 335 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCCe-EeeccCC-CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC---
Confidence 888654 68876655 6666553 4455443 5678899999999776554 677888888653221111111111
Q ss_pred cCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEc
Q 017314 304 SNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372 (373)
Q Consensus 304 ~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW 372 (373)
+ ...++|||++|+.++.++ +.+||+.+++.......+ ...+++|+|||++|++++.+|.+.+|
T Consensus 336 --~-~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l 398 (429)
T PRK01742 336 --Y-SAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVL 398 (429)
T ss_pred --C-CccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEE
Confidence 1 245899999998888765 666999888654332222 23568899999999999999988776
No 202
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.73 E-value=8.7e-16 Score=142.69 Aligned_cols=242 Identities=16% Similarity=0.190 Sum_probs=171.0
Q ss_pred cCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCce--ee----eccccccceEEEEEcCCCC--EEEEEeCCCcEEEEE
Q 017314 88 EGGCASILFEY-NSARLISGGQDKSIKLWDTNTGSL--SS----TLYGCLGSVLDLAITHDNR--SVIAASSSNNLYVWD 158 (373)
Q Consensus 88 ~~~v~~~~~~~-~~~~l~s~s~D~~v~iwd~~~~~~--~~----~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd 158 (373)
...|+++.|+| +.++++.|..+|.|.+||+..+.. .. ....|..+++.+.|..+.. -++++|.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 46799999998 566888888999999999987654 22 2345788899888866554 499999999999998
Q ss_pred cCCCee------EEEee------cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE---EccCCe-----eeeEE-eecCce
Q 017314 159 VNSGRV------RHTLT------GHTDKVCAVDVSKISSRHVVSAAYDRTLKVW---DLHKGY-----CVNTI-IFHSNC 217 (373)
Q Consensus 159 ~~~~~~------~~~~~------~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vw---d~~~~~-----~~~~~-~~~~~~ 217 (373)
++.-.. ..... .-...+++++|.+...+.++.|+.+|.|..- +...+. ....+ .+...+
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 764221 11111 1123578899999889999999999998763 333222 11122 233558
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECC-CCeeeEEEecccccceEEEEEcCCCC-EEEEeeCCCeEEEEEcccc--ceee
Q 017314 218 NALAFSMDGQTIFSGHIDGNLRLWDIQ-TGKLLSEVAAHSLAAVTSISLSRSGN-IILTSGRDNLHNLFDIRSL--EVCG 293 (373)
Q Consensus 218 ~~~~~~~~g~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~d~~~~--~~~~ 293 (373)
.++.++|=+..++..+.|-+++||... ...++..+..+. ..+++++|||.-. .++++..||.+.+||+... +++.
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~-~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSP-DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhcc-ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 899999977666655559999999987 555555554443 4599999999875 6777778999999998743 2333
Q ss_pred eeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccC
Q 017314 294 SLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK 334 (373)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~ 334 (373)
+.... ........+++.|+.|+.|...|++.+|++..
T Consensus 481 s~~~~----~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 481 SQKVC----SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccccc----ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 32222 11122344678899999999999999999864
No 203
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.73 E-value=1.4e-17 Score=144.84 Aligned_cols=263 Identities=23% Similarity=0.301 Sum_probs=196.8
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEE
Q 017314 88 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT 167 (373)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 167 (373)
.-+-+.+.++.+|..|+.||.-|.|-.+|..++++...+.. ...|.++.|-.+..++ +....+.++|||- .|..++.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~-AVAQK~y~yvYD~-~GtElHC 205 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFF-AVAQKKYVYVYDN-NGTELHC 205 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHH-HhhhhceEEEecC-CCcEEee
Confidence 44556789999999999999999999999999988776643 4568888888776654 4567788999995 5666777
Q ss_pred eecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeec-CceeEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 017314 168 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG 246 (373)
Q Consensus 168 ~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~ 246 (373)
++.| ..|..+.|.|. .-+|++++..|.++.-|+..|+.+..+... .....++-+|-+..+-.|...|+|.+|.....
T Consensus 206 lk~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred hhhc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 7765 56777888773 446788899999999999999887766544 34667888898888889999999999999998
Q ss_pred eeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCc
Q 017314 247 KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGS 326 (373)
Q Consensus 247 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~ 326 (373)
+.+..+..|. ++|.+|+++++|+|++|+|.|+.++|||+|......++.... ..+.+.+|. +-+++.|....
T Consensus 284 ePLvKiLcH~-g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~-----~a~~ls~Sq--kglLA~~~G~~ 355 (545)
T KOG1272|consen 284 EPLVKILCHR-GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH-----PASNLSLSQ--KGLLALSYGDH 355 (545)
T ss_pred chHHHHHhcC-CCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC-----Ccccccccc--ccceeeecCCe
Confidence 8888888886 899999999999999999999999999999887665554311 112234443 33444455557
Q ss_pred EEEEEc-cCce--EEEEeccC--CccEEEEEEcCCCCcEEEE
Q 017314 327 VYIWSI-SKAD--IVRTLKEH--TAPVLSCSWSGLGKPLASA 363 (373)
Q Consensus 327 i~iwd~-~~~~--~~~~l~~h--~~~V~~~~~s~~g~~l~s~ 363 (373)
|.||.= ..+. .-.-+-.| .++|..+.|.|-...|-.|
T Consensus 356 v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIG 397 (545)
T KOG1272|consen 356 VQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIG 397 (545)
T ss_pred eeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeecc
Confidence 999952 2211 11111123 3588999998865555444
No 204
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=5.4e-15 Score=123.21 Aligned_cols=231 Identities=15% Similarity=0.274 Sum_probs=158.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEE-EEEeCC------CcEEEEEccCC
Q 017314 133 VLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHV-VSAAYD------RTLKVWDLHKG 205 (373)
Q Consensus 133 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-~s~s~D------~~i~vwd~~~~ 205 (373)
..+++|+.|..-++ .+.|.-.+||+.+--+....-..+...+.-+..-. ..+++ +.|+.+ ..+.|||-...
T Consensus 8 ~lsvs~NQD~ScFa-va~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf-R~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFA-VATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF-RSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred eeEEEEccCCceEE-EEecCceEEEecCchhhhhhhccccCchhhhhHhh-hhceEEEecCCCCCCCCCceEEEEecccC
Confidence 45588888776555 45556689998764322111111111111111111 23444 344443 57999998888
Q ss_pred eeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECC-CCeeeEEEeccc-ccceEEEEEcCCCCEEEEee-CCCeEE
Q 017314 206 YCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ-TGKLLSEVAAHS-LAAVTSISLSRSGNIILTSG-RDNLHN 282 (373)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~-~d~~i~ 282 (373)
+++.++.+..++.++.+.++ .|++. ..+.|.+|... +.+.++.+.... .....+++-..+..+|+--| .-|.+.
T Consensus 86 ~~i~el~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ 162 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ 162 (346)
T ss_pred cEEEEEEeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence 99999999999999999866 34444 35789999987 556666554432 23344444333444555434 458899
Q ss_pred EEEcccccee--eeeeecCCeeecCeeeeEECCCCcEEEEEeCCCc-EEEEEccCceEEEEeccC--CccEEEEEEcCCC
Q 017314 283 LFDIRSLEVC--GSLRATGNRVASNWSRSCISPDESYVAAGSADGS-VYIWSISKADIVRTLKEH--TAPVLSCSWSGLG 357 (373)
Q Consensus 283 ~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~-i~iwd~~~~~~~~~l~~h--~~~V~~~~~s~~g 357 (373)
+-|+...+.. ..+.+|...+. .++++-+|.++||+|..|+ |||||..+|+++++++.- ...|.+++|||++
T Consensus 163 i~dL~~~~~~~p~~I~AH~s~Ia----cv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 163 IVDLASTKPNAPSIINAHDSDIA----CVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred EEEhhhcCcCCceEEEcccCcee----EEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 9998866552 44556665554 4678899999999999996 899999999999998753 3579999999999
Q ss_pred CcEEEEeCCCeEEEc
Q 017314 358 KPLASADKNGVVCVW 372 (373)
Q Consensus 358 ~~l~s~s~dg~i~iW 372 (373)
.+||.+|..|+|+|+
T Consensus 239 s~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHIF 253 (346)
T ss_pred cEEEEEcCCCeEEEE
Confidence 999999999999997
No 205
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=6.4e-15 Score=136.76 Aligned_cols=235 Identities=16% Similarity=0.136 Sum_probs=156.5
Q ss_pred CcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCC
Q 017314 110 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS---SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR 186 (373)
Q Consensus 110 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 186 (373)
..|.+||...... ..+..+...+.+.+|+|||+.|+..+. +..+.+||+.+++.... ......+....|+|. ++
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPD-G~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPD-GS 255 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCC-CC
Confidence 4688898875543 334445678899999999999886653 35799999988864332 222233445779884 55
Q ss_pred EEE-EEeCCC--cEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeC-CCcEEE--EECCCCeeeEEEecccccce
Q 017314 187 HVV-SAAYDR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI-DGNLRL--WDIQTGKLLSEVAAHSLAAV 260 (373)
Q Consensus 187 ~~~-s~s~D~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~-dg~i~i--wd~~~~~~~~~~~~~~~~~v 260 (373)
.++ +.+.++ .|.+||+.++...+............|+|||+.|+..+. ++..++ +|+.+++. ..+.... ...
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~-~~~ 333 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEG-SQN 333 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCC-CCc
Confidence 554 445555 488899988765443333345678899999998876665 344444 46666643 3343332 345
Q ss_pred EEEEEcCCCCEEEEeeCC---CeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCc---EEEEEccC
Q 017314 261 TSISLSRSGNIILTSGRD---NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGS---VYIWSISK 334 (373)
Q Consensus 261 ~~~~~~~~~~~l~s~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~---i~iwd~~~ 334 (373)
....|+|+|++|+..+.+ ..+.+||+.+.+. ..+.... .. ....++|||++|+.++.++. ++++++ +
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~~-~~----~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~ 406 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDTF-LD----ETPSIAPNGTMVIYSSSQGMGSVLNLVST-D 406 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCCC-CC----CCceECCCCCEEEEEEcCCCceEEEEEEC-C
Confidence 678899999998876543 3477888876653 2232111 11 12458999999999988875 666666 4
Q ss_pred ceEEEEeccCCccEEEEEEcCC
Q 017314 335 ADIVRTLKEHTAPVLSCSWSGL 356 (373)
Q Consensus 335 ~~~~~~l~~h~~~V~~~~~s~~ 356 (373)
|.....+.+|.+.+...+|||-
T Consensus 407 G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 407 GRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCCeEECccCCCCcCCcccCCC
Confidence 6666778888889999999983
No 206
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.71 E-value=5e-15 Score=123.89 Aligned_cols=275 Identities=15% Similarity=0.220 Sum_probs=189.5
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCeeEEEeecCC
Q 017314 94 ILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIA-ASSSNNLYVWDVNSGRVRHTLTGHT 172 (373)
Q Consensus 94 ~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~h~ 172 (373)
.+|||+|+++|+++.- .+.|-|.++-+..+ +..+...|.-+.|..|..++++ +..|+.|.+|++...+-...+..-.
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q-lf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQ-LFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHH-HHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 5799999999999866 77888888766543 3334566777888888876654 5667799999998877667777777
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeC------------------
Q 017314 173 DKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI------------------ 234 (373)
Q Consensus 173 ~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~------------------ 234 (373)
+++..++|+|.+.+.+.+...|-.|.+|.+.+..+...--....+..++|+|||++.+..+.
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll 171 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILL 171 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHH
Confidence 88999999995546667888999999999987765433333345677888888887665443
Q ss_pred ------------------CCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeee
Q 017314 235 ------------------DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR 296 (373)
Q Consensus 235 ------------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~ 296 (373)
+..+-+||-.-.-.+. ..+-.-.+..+.|+|.+++|+.|+.|+.+++.+--+.+..+++.
T Consensus 172 ~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~--aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~efl 249 (447)
T KOG4497|consen 172 KEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY--AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFL 249 (447)
T ss_pred HhcCCCcccccCceECCCCcEEEEecchhhheee--eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhc
Confidence 1123444432111111 11222468889999999999999999998876543322211110
Q ss_pred -----------------------------e-------c--------------------------CCeeecCeeeeEECCC
Q 017314 297 -----------------------------A-------T--------------------------GNRVASNWSRSCISPD 314 (373)
Q Consensus 297 -----------------------------~-------~--------------------------~~~~~~~~~~~~~s~~ 314 (373)
. + ...-.......+|++|
T Consensus 250 hl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~D 329 (447)
T KOG4497|consen 250 HLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCD 329 (447)
T ss_pred cchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCC
Confidence 0 0 0000122345789999
Q ss_pred CcEEEEEeCC--CcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 315 ESYVAAGSAD--GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 315 ~~~l~sgs~D--g~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
..|+++-.+. ..+-+||+...+....+. ...+|....|+|....|+.+.....+.+|.
T Consensus 330 s~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 330 STYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred ceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence 9999987643 579999998877655543 345899999999888887777666788873
No 207
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.4e-15 Score=129.93 Aligned_cols=247 Identities=13% Similarity=0.149 Sum_probs=181.4
Q ss_pred eeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCC------CeeEEEee-cCCCcEEEEEEeeCCCCEEEEEeCCC
Q 017314 123 SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS------GRVRHTLT-GHTDKVCAVDVSKISSRHVVSAAYDR 195 (373)
Q Consensus 123 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~~s~s~D~ 195 (373)
.+-+.+|.+-|.++.|+.++++|++|+.|..+++|.++. .+++.... .|...|.|++|.. ....+++|..++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCcc
Confidence 445678999999999999999999999999999999853 34444333 3558899999976 567899999999
Q ss_pred cEEEEEccCCeeeeEEeecC---ceeEEEEccCCCEEEEEeCCCcEEEEECCCCe-eeEE-EecccccceEEEEEcCCCC
Q 017314 196 TLKVWDLHKGYCVNTIIFHS---NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSE-VAAHSLAAVTSISLSRSGN 270 (373)
Q Consensus 196 ~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~ 270 (373)
+|.+.|+++.+.+..+.... .|..+..+|-.+.+++.+.+|.|.+||.+..+ .+.. +.........++-|+|-..
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 99999999988776665444 58889999999999999999999999998655 2221 2223335678888998654
Q ss_pred -EEEEeeCCCeEEEEEccccceeeeeeecC----CeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEE-EEeccC
Q 017314 271 -IILTSGRDNLHNLFDIRSLEVCGSLRATG----NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV-RTLKEH 344 (373)
Q Consensus 271 -~l~s~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~-~~l~~h 344 (373)
+|++++..+-+.+||.+..... .++... ..-...|..+.++|.|..|.+--.-..=.+||+-+..+. -.+ .|
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~-~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~-D~ 285 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARP-VYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS-DH 285 (609)
T ss_pred eeEEeccccCCCCceeeccccch-HHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec-cC
Confidence 7788888889999998854311 111100 111234555678999988877655555567888775543 222 23
Q ss_pred -------CccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 345 -------TAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 345 -------~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
...+.+|+|-.|- -++|||.+-.|++|.
T Consensus 286 N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~Wk 320 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWK 320 (609)
T ss_pred CCCcceeeeeeeeeeeecce-eeeccCcccceEEEe
Confidence 2357889997664 499999999999994
No 208
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.71 E-value=5.4e-15 Score=142.42 Aligned_cols=254 Identities=16% Similarity=0.209 Sum_probs=173.5
Q ss_pred EeCCCCceeeeccccccceEEEEEcCCC-CEEEEEeCCCcEEEEEcCCC-------eeEEEeecCCCcEEEEEEeeCCCC
Q 017314 115 WDTNTGSLSSTLYGCLGSVLDLAITHDN-RSVIAASSSNNLYVWDVNSG-------RVRHTLTGHTDKVCAVDVSKISSR 186 (373)
Q Consensus 115 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~ 186 (373)
|++ .|..+..+..|...|..++.+++. .++++||.||+||+||...- +...++.--...+.++...+ .++
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~ 1111 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGD 1111 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCC
Confidence 443 366778888899999898887766 89999999999999997531 23334443456777777766 567
Q ss_pred EEEEEeCCCcEEEEEccCCe-------eeeEEeec--Cc-eeEEEEcc-CCC-EEEEEeCCCcEEEEECCCCeeeEEEec
Q 017314 187 HVVSAAYDRTLKVWDLHKGY-------CVNTIIFH--SN-CNALAFSM-DGQ-TIFSGHIDGNLRLWDIQTGKLLSEVAA 254 (373)
Q Consensus 187 ~~~s~s~D~~i~vwd~~~~~-------~~~~~~~~--~~-~~~~~~~~-~g~-~l~sg~~dg~i~iwd~~~~~~~~~~~~ 254 (373)
.++.++.||.|++.++.... +.+....+ .. +..-++.. .+. .++.+..-+.|..||+++......+..
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 88888999999999986521 11110011 11 12222322 233 677788889999999998665544322
Q ss_pred c-cccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEE---CCCCcEEEEEe--CCCcEE
Q 017314 255 H-SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI---SPDESYVAAGS--ADGSVY 328 (373)
Q Consensus 255 ~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~l~sgs--~Dg~i~ 328 (373)
. ..+.|++++.+|.+++++.|...|.+.+||+|-...+........ .....++. .|...+.++++ ..+.|.
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~---~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR---APIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc---CCcceEEeeccCCCCceEEEecccCCCcee
Confidence 1 126899999999999999999999999999997776666543322 22222333 34456666654 467899
Q ss_pred EEEccCceEEEEeccC-------------------CccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 329 IWSISKADIVRTLKEH-------------------TAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 329 iwd~~~~~~~~~l~~h-------------------~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
+|++.+|..-.++... .-+...+++...+..+.+|+.|..||.||
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 9999998665554321 12234455555567899999999999997
No 209
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.70 E-value=1.7e-15 Score=134.23 Aligned_cols=262 Identities=15% Similarity=0.220 Sum_probs=177.0
Q ss_pred CccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccc-eEEEEE-------cCCCCEEEEEeCCCcEEEE
Q 017314 86 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGS-VLDLAI-------THDNRSVIAASSSNNLYVW 157 (373)
Q Consensus 86 ~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-v~~~~~-------~~~~~~l~s~s~d~~i~iw 157 (373)
.|...|-++.|+.+...+++++.+..++-||+.+... ..+.-...- .+++.. ......++.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 3555666888888777777666555555566544322 111000000 000100 1123468888999998887
Q ss_pred EcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEE-eecCceeEEEEccCCCEEEEEeCCC
Q 017314 158 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI-IFHSNCNALAFSMDGQTIFSGHIDG 236 (373)
Q Consensus 158 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~sg~~dg 236 (373)
+ ..+++...+.+|.+.+.+-.|++ ++.-++|++.||.|++|.- +|....++ .....+.|++|.|+...++-+. .+
T Consensus 91 ~-k~~rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~ 166 (737)
T KOG1524|consen 91 N-KSARVERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GG 166 (737)
T ss_pred c-ccchhhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEec-CC
Confidence 6 46777888899999999999998 6778999999999999973 33322222 2345689999999876554332 35
Q ss_pred cEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCc
Q 017314 237 NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES 316 (373)
Q Consensus 237 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 316 (373)
.+.|=.+.....+.....|. +-|.++.|++..+++++||.|-..++||.... ...+-..+.. ++..+++.|+ .
T Consensus 167 h~~IKpL~~n~k~i~WkAHD-GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-~Lf~S~~~ey----~ITSva~npd-~ 239 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHD-GLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-NLFTSAAEEY----AITSVAFNPE-K 239 (737)
T ss_pred eEEEeecccccceeEEeccC-cEEEEeecCccccceeecCCceeEEeecccCc-ccccCChhcc----ceeeeeeccc-c
Confidence 66666666665666777886 88999999999999999999999999997532 2222222222 3345788999 6
Q ss_pred EEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEE
Q 017314 317 YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV 371 (373)
Q Consensus 317 ~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~i 371 (373)
.++.||.. ++|+ -+...++|..++|||||..++.|...|.+.+
T Consensus 240 ~~~v~S~n-t~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 240 DYLLWSYN-TARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ceeeeeee-eeee-----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 66666643 2331 1234578999999999999999999888754
No 210
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.69 E-value=8.1e-15 Score=122.21 Aligned_cols=200 Identities=17% Similarity=0.217 Sum_probs=163.2
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCc---eeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcC-CC-
Q 017314 88 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGS---LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN-SG- 162 (373)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~-~~- 162 (373)
..+|++.+|++|.+.+|.+-....|.||...... ...++..|...|+.+.|+|..+.|++++.|..-+||... .+
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 4789999999999999999999999999987654 567888999999999999999999999999999999984 33
Q ss_pred -eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCee--ee---EEeecCceeEEEEccCCCEEEEEeCCC
Q 017314 163 -RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC--VN---TIIFHSNCNALAFSMDGQTIFSGHIDG 236 (373)
Q Consensus 163 -~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~--~~---~~~~~~~~~~~~~~~~g~~l~sg~~dg 236 (373)
++...+.-|...++++.|+| ..+.|++||.-+.|.||-++.... +. ..+..+.++++.|+|++-+|++|+.|+
T Consensus 90 WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 35556677899999999999 567899999999999987754321 11 112345689999999999999999999
Q ss_pred cEEEEECC------------------CCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEcccc
Q 017314 237 NLRLWDIQ------------------TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL 289 (373)
Q Consensus 237 ~i~iwd~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~ 289 (373)
..|++..- -|+++.++. ...+.+..+.|+|+|+.|+=.+.|.++.+-|....
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 99998631 123333332 23367999999999999999999999999887654
No 211
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1.8e-14 Score=134.33 Aligned_cols=234 Identities=17% Similarity=0.193 Sum_probs=155.8
Q ss_pred CcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCC
Q 017314 110 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS---NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR 186 (373)
Q Consensus 110 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 186 (373)
..|.+||.... ....+..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +..+........|+|....
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 46899998644 344455667788999999999999887744 469999998876543 3333444456788885444
Q ss_pred EEEEEeCCC--cEEEEEccCCeeeeEEeec-CceeEEEEccCCCEEEEEe-CCCc--EEEEECCCCeeeEEEecccccce
Q 017314 187 HVVSAAYDR--TLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGH-IDGN--LRLWDIQTGKLLSEVAAHSLAAV 260 (373)
Q Consensus 187 ~~~s~s~D~--~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~sg~-~dg~--i~iwd~~~~~~~~~~~~~~~~~v 260 (373)
.+++.+.++ .|.+||+.++.... +..+ ......+|+|||+.|+.++ .+|. |.++|+.+++.. .+.... ...
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g-~~~ 338 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQG-NYN 338 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCC-CCc
Confidence 445666666 58999998876533 2222 2345689999999888665 3454 666777766533 333222 234
Q ss_pred EEEEEcCCCCEEEEeeCCC---eEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCC---CcEEEEEccC
Q 017314 261 TSISLSRSGNIILTSGRDN---LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD---GSVYIWSISK 334 (373)
Q Consensus 261 ~~~~~~~~~~~l~s~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~D---g~i~iwd~~~ 334 (373)
...+|+|+|++|+..+.++ .+.+||+.+.+.. .+.. .... ....++|||++|+..+.+ +.|++++..
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-~~~~----~~p~~spdG~~i~~~s~~~g~~~L~~~~~~- 411 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP-GSLD----ESPSFAPNGSMVLYATREGGRGVLAAVSTD- 411 (433)
T ss_pred cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC-CCCC----CCceECCCCCEEEEEEecCCceEEEEEECC-
Confidence 5689999999988765433 5889998766543 2321 1111 124689999988776653 357788774
Q ss_pred ceEEEEeccCCccEEEEEEcC
Q 017314 335 ADIVRTLKEHTAPVLSCSWSG 355 (373)
Q Consensus 335 ~~~~~~l~~h~~~V~~~~~s~ 355 (373)
+.....+..+.+.+...+|||
T Consensus 412 g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 412 GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCceEEcccCCCCCCCCccCC
Confidence 445566666667788889987
No 212
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.68 E-value=9.6e-16 Score=135.72 Aligned_cols=185 Identities=17% Similarity=0.237 Sum_probs=142.6
Q ss_pred EEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 017314 82 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 161 (373)
Q Consensus 82 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 161 (373)
..+.+|.+.+.+-.|+|||.-|+|+|.||.|++|.- +|-+..++.....+|.|++|.|+.+.++.+..+ .+.|=.+.-
T Consensus 98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~-h~~IKpL~~ 175 (737)
T KOG1524|consen 98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG-HISIKPLAA 175 (737)
T ss_pred hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecCC-eEEEeeccc
Confidence 456789999999999999999999999999999984 455555566667789999999999877665443 455555554
Q ss_pred CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEE
Q 017314 162 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLW 241 (373)
Q Consensus 162 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iw 241 (373)
...+-..++|.+-|.+++|++ .++.++||+.|-..++||...........+...+++++|.|+ ..++.|+. .+.|+
T Consensus 176 n~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~- 251 (737)
T KOG1524|consen 176 NSKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF- 251 (737)
T ss_pred ccceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeee-eeeee-
Confidence 444556789999999999998 578999999999999999865444444444567999999999 55555554 34552
Q ss_pred ECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEE
Q 017314 242 DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL 283 (373)
Q Consensus 242 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~ 283 (373)
.....+.|..++|++||..++.|...|.+.+
T Consensus 252 -----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 252 -----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred -----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 2222367999999999999999888886643
No 213
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=1.3e-14 Score=121.06 Aligned_cols=236 Identities=17% Similarity=0.216 Sum_probs=171.9
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe---eEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcc-C
Q 017314 129 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR---VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH-K 204 (373)
Q Consensus 129 ~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~-~ 204 (373)
-..+|++.+|++|...++.+-..+.|.||.....+ ..+++..|...|++++|.| ..+.|++|+.|+.-.||... .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCC
Confidence 45789999999999999999999999999987654 6889999999999999998 56789999999999999984 4
Q ss_pred CeeeeE---EeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeee---EEEecccccceEEEEEcCCCCEEEEeeCC
Q 017314 205 GYCVNT---IIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL---SEVAAHSLAAVTSISLSRSGNIILTSGRD 278 (373)
Q Consensus 205 ~~~~~~---~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 278 (373)
+.-..+ +..+...+++.|+|.++.+++|+.-..|.+|=......- +.+.......|++++|+|++-+|++|+.|
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence 433333 234566899999999999999999999999866532211 11222223679999999999999999999
Q ss_pred CeEEEEEccccce--------------eeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCce-EEEEecc
Q 017314 279 NLHNLFDIRSLEV--------------CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD-IVRTLKE 343 (373)
Q Consensus 279 ~~i~~~d~~~~~~--------------~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~-~~~~l~~ 343 (373)
+.+++|..--..+ .+.+-........-...+.|+|+|..|+=.+.|+.+.+=|..... .+..+..
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~ 247 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVAT 247 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhh
Confidence 9999997421111 111100000111122357899999999999999999999877654 3444443
Q ss_pred CCccEEEEEEcCCCCcEEEEeCC
Q 017314 344 HTAPVLSCSWSGLGKPLASADKN 366 (373)
Q Consensus 344 h~~~V~~~~~s~~g~~l~s~s~d 366 (373)
..-|-.++.|-.+. .++.++.|
T Consensus 248 ~~lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 248 AQLPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred ccCCceeeEeecCC-ceeecCCC
Confidence 33677788775443 34444444
No 214
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.67 E-value=2.5e-16 Score=137.11 Aligned_cols=229 Identities=17% Similarity=0.242 Sum_probs=186.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEe
Q 017314 133 VLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII 212 (373)
Q Consensus 133 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~ 212 (373)
...+.++.+|+.++.++..|.+-.+|..++++...+. -...|..+.|... ..+++....+.+.|||- .|..++.+.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHn--eq~~AVAQK~y~yvYD~-~GtElHClk 207 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHN--EQFFAVAQKKYVYVYDN-NGTELHCLK 207 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcc--hHHHHhhhhceEEEecC-CCcEEeehh
Confidence 3457899999999999999999999999998776664 2355667776552 33445556677888884 566677777
Q ss_pred ecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEcccccee
Q 017314 213 FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVC 292 (373)
Q Consensus 213 ~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~ 292 (373)
.+..+..+.|-|..-+|++++..|.++--|+.+|+.+..+.... +.+..++-+|-+..+-.|...|++.+|.....++.
T Consensus 208 ~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~-G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL 286 (545)
T KOG1272|consen 208 RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA-GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL 286 (545)
T ss_pred hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC-CccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence 78889999999999999999999999999999999998887665 78899999999999999999999999999988887
Q ss_pred eeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEc
Q 017314 293 GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372 (373)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW 372 (373)
..+..|...+. .+++.++|.|+||.+.|..++|||+.....+.++.. .-+...++||..| +.+.|..-.+.||
T Consensus 287 vKiLcH~g~V~----siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 287 VKILCHRGPVS----SIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred HHHHhcCCCcc----eEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence 77777766654 478999999999999999999999998877666654 3456788998755 4455566678888
Q ss_pred C
Q 017314 373 T 373 (373)
Q Consensus 373 ~ 373 (373)
.
T Consensus 360 ~ 360 (545)
T KOG1272|consen 360 K 360 (545)
T ss_pred h
Confidence 3
No 215
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.67 E-value=2.9e-15 Score=132.71 Aligned_cols=198 Identities=16% Similarity=0.231 Sum_probs=138.4
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCeeEEEe----ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeec
Q 017314 139 THDNRSVIAASSSNNLYVWDVNSGRVRHTL----TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH 214 (373)
Q Consensus 139 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~ 214 (373)
.+.+-.++.+-.-|.+.+.|....+..+.+ .-.+..|+++.|-+.+...++.+-.+|.+.++|..- ...
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~ 254 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCG 254 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------ccc
Confidence 355666777888888888887653221111 112467999999998888888899999999998621 111
Q ss_pred CceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeee
Q 017314 215 SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGS 294 (373)
Q Consensus 215 ~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~ 294 (373)
....+....+++..+.....-+. .+...+....... ..|...+|+|||++||+.+.|+.++|||..+.+....
T Consensus 255 ~t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~-g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~ 327 (636)
T KOG2394|consen 255 ATAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGE-GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV 327 (636)
T ss_pred CCCCcccccCCCCeeEEeeeecc------ccCCccceeEecc-ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH
Confidence 11112223345544432211110 0112222332232 5799999999999999999999999999988766554
Q ss_pred eeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEc
Q 017314 295 LRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWS 354 (373)
Q Consensus 295 ~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s 354 (373)
++.-.. ...++|+||||+||++|++|--|.||.+...+.+..-++|.+.|..|+|.
T Consensus 328 mkSYFG----GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 328 MKSYFG----GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred HHhhcc----ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 433222 22357899999999999999999999999999999999999999999998
No 216
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.66 E-value=3.1e-15 Score=121.52 Aligned_cols=200 Identities=21% Similarity=0.310 Sum_probs=150.0
Q ss_pred ec-CccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceee--------------ec----------------------
Q 017314 84 IN-AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSS--------------TL---------------------- 126 (373)
Q Consensus 84 ~~-~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~--------------~~---------------------- 126 (373)
++ .|...|+.+.--|+ ..|.+=+.|+.+.+|++.-+..+. .+
T Consensus 51 ~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h 129 (323)
T KOG0322|consen 51 IRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETH 129 (323)
T ss_pred hhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhh
Confidence 44 46677888877776 678889999999999886421100 00
Q ss_pred -----------------cccccceEEEEEcC-CCC--EEEEEeCCCcEEEEEcCCC----------eeEEEeecCCCcEE
Q 017314 127 -----------------YGCLGSVLDLAITH-DNR--SVIAASSSNNLYVWDVNSG----------RVRHTLTGHTDKVC 176 (373)
Q Consensus 127 -----------------~~~~~~v~~~~~~~-~~~--~l~s~s~d~~i~iwd~~~~----------~~~~~~~~h~~~v~ 176 (373)
.+..+.+.+..+.. ++. .+++|-.+|.+-+||+.++ +...-...|..+|.
T Consensus 130 ~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvl 209 (323)
T KOG0322|consen 130 KQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVL 209 (323)
T ss_pred hhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcce
Confidence 00123444444322 222 4567778999999999987 34445567999999
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEEccCC--eee--eEEe-ecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEE
Q 017314 177 AVDVSKISSRHVVSAAYDRTLKVWDLHKG--YCV--NTII-FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE 251 (373)
Q Consensus 177 ~~~~~~~~~~~~~s~s~D~~i~vwd~~~~--~~~--~~~~-~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~ 251 (373)
++++.+. ...=++|+.+..+..|.+... .+. .+.. .+..+..+.+-||++.+++++.|+.||+|..++.+.+..
T Consensus 210 sldyas~-~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAV 288 (323)
T KOG0322|consen 210 SLDYASS-CDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAV 288 (323)
T ss_pred eeeechh-hcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhh
Confidence 9998763 345678888999999988643 221 1111 234578899999999999999999999999999999999
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCeEEEEEc
Q 017314 252 VAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI 286 (373)
Q Consensus 252 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~ 286 (373)
+..|. ..|++++|+|+.+++++++.|..|.+|++
T Consensus 289 LkyHs-agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 289 LKYHS-AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhh-cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99998 89999999999999999999999999985
No 217
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=3.1e-14 Score=121.72 Aligned_cols=260 Identities=18% Similarity=0.199 Sum_probs=180.7
Q ss_pred cCcEEEEEEcCCCC--EEEEeeCCCcEEEEeCCCCceeee------ccccccceEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 017314 88 EGGCASILFEYNSA--RLISGGQDKSIKLWDTNTGSLSST------LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV 159 (373)
Q Consensus 88 ~~~v~~~~~~~~~~--~l~s~s~D~~v~iwd~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 159 (373)
...|++++|..+++ .|...+.|..+..+++........ .....++|..++.. +..|++|-.+|.+++|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 35677888876654 455555788888887776554333 23345566665543 346888899999999998
Q ss_pred CCCe----eEEEeecCCCcEEEEEEeeCCCCEEEEEeCC--CcEEEEEccCCeeeeEEe----------ecCceeEEEEc
Q 017314 160 NSGR----VRHTLTGHTDKVCAVDVSKISSRHVVSAAYD--RTLKVWDLHKGYCVNTII----------FHSNCNALAFS 223 (373)
Q Consensus 160 ~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D--~~i~vwd~~~~~~~~~~~----------~~~~~~~~~~~ 223 (373)
..+- ....+..+ ..+..+.-++.....+++|+.. ..+++||+.....+.+.. .+-....+.|-
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 7432 22233323 4455566666667777889998 889999998774433221 11224678888
Q ss_pred cC--CCEEEEEeCCCcEEEEECCCCe-eeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeee-eeecC
Q 017314 224 MD--GQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGS-LRATG 299 (373)
Q Consensus 224 ~~--g~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~-~~~~~ 299 (373)
+. ...+++++.-+.+|+||.+.++ ++..+... ..+++++...|++++++++..-+.+..||++.....+. +.+.
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~- 289 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI- 289 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEeccc-cCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc-
Confidence 87 7889999999999999998765 44555444 37899999999999999999999999999998876655 3322
Q ss_pred CeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCC
Q 017314 300 NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGL 356 (373)
Q Consensus 300 ~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~ 356 (373)
......+..+|.+.++|+|+-|..|||+|+.+.+++...= -....+++-+.++
T Consensus 290 ---tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 290 ---TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred ---cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence 2223335568999999999999999999999866553210 1123455555443
No 218
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=4.9e-14 Score=119.45 Aligned_cols=182 Identities=18% Similarity=0.307 Sum_probs=133.9
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccc-cccceEEEEEcCCCCEEEEEeCCCcEEEEEcCC----Ce-
Q 017314 90 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG-CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS----GR- 163 (373)
Q Consensus 90 ~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~----~~- 163 (373)
.+..++|++.-..++.+..|-+||+||-+. .+...++. ....|++++|.|.+..-++.+.-+-|.+|.... +.
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~ 178 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRN 178 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccc
Confidence 456788888777899999999999999766 44444432 234699999999987766666667799998642 11
Q ss_pred ---------eEEEeecCCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEEccCCeeeeEE-eecCceeEEEEccCCCEEEEE
Q 017314 164 ---------VRHTLTGHTDKVCAVDVSKISSRHVVSAAY-DRTLKVWDLHKGYCVNTI-IFHSNCNALAFSMDGQTIFSG 232 (373)
Q Consensus 164 ---------~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~-D~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~sg 232 (373)
.+....+| .+|+++.|.+ ++..++++|. |..|.|||..++.++.-. .....+.-+.|||||.+|+++
T Consensus 179 ~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 179 IRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred cccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 12233556 7899999987 5777888775 688999999998876655 233457789999999999999
Q ss_pred eCCCcEEEEECC-CCeeeEEEecccccceEEEEEcCCCCEEEEee
Q 017314 233 HIDGNLRLWDIQ-TGKLLSEVAAHSLAAVTSISLSRSGNIILTSG 276 (373)
Q Consensus 233 ~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 276 (373)
+-|+..++|... +.....-..+ . +.|..-+|+|+|++|+-..
T Consensus 257 t~davfrlw~e~q~wt~erw~lg-s-grvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 257 TCDAVFRLWQENQSWTKERWILG-S-GRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred cccceeeeehhcccceecceecc-C-CceeeeeecCCCCEEEEEE
Confidence 999999999553 3332222222 2 5899999999999765443
No 219
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=3.2e-15 Score=132.79 Aligned_cols=215 Identities=21% Similarity=0.347 Sum_probs=150.2
Q ss_pred eeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEe-ecCCCcEEEEEEeeCC-CCEEEEEeCCCcEEEE
Q 017314 123 SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL-TGHTDKVCAVDVSKIS-SRHVVSAAYDRTLKVW 200 (373)
Q Consensus 123 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~-~~~~~s~s~D~~i~vw 200 (373)
...+.||.+=|.++.|+.||.+|++||.|-.+.|||+-.-++++.+ .||+..|.++.|-|.. ...++||+.|+.|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3567899999999999999999999999999999999877777665 6899999999998854 4567899999999999
Q ss_pred EccCCe----------eeeEEeec-CceeEEEEccCC-CEEEEEeCCCcEEEEECCCCeeeE-EEecc--------cccc
Q 017314 201 DLHKGY----------CVNTIIFH-SNCNALAFSMDG-QTIFSGHIDGNLRLWDIQTGKLLS-EVAAH--------SLAA 259 (373)
Q Consensus 201 d~~~~~----------~~~~~~~~-~~~~~~~~~~~g-~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~--------~~~~ 259 (373)
|+...+ ....+..| ..+..++..|++ ..+.+++.||+|+-+|++....-. ....+ ..-.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 997421 11122223 246778889988 567799999999999998632111 11010 1134
Q ss_pred eEEEEEcCCCC-EEEEeeCCCeEEEEEccccce------------------eeeee-ecC---Ce----eecCeeeeEEC
Q 017314 260 VTSISLSRSGN-IILTSGRDNLHNLFDIRSLEV------------------CGSLR-ATG---NR----VASNWSRSCIS 312 (373)
Q Consensus 260 v~~~~~~~~~~-~l~s~~~d~~i~~~d~~~~~~------------------~~~~~-~~~---~~----~~~~~~~~~~s 312 (373)
..++.++|... +|+.|+.|-..++||.|.... +..+. .+. .. ......-+.|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 67888998765 788899999999999542111 11110 010 00 00001224689
Q ss_pred CCCcEEEEEeCCCcEEEEEccCceE
Q 017314 313 PDESYVAAGSADGSVYIWSISKADI 337 (373)
Q Consensus 313 ~~~~~l~sgs~Dg~i~iwd~~~~~~ 337 (373)
|+|.-|+..=..-.|+++|+..++.
T Consensus 283 pNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 283 PNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred CCCcEEEEeeCCeEEEEEeecCCCC
Confidence 9987655544444799999987654
No 220
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=8.9e-13 Score=119.16 Aligned_cols=267 Identities=15% Similarity=0.065 Sum_probs=169.4
Q ss_pred EEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeC
Q 017314 104 ISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKI 183 (373)
Q Consensus 104 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 183 (373)
++-..++.|.+.|..+.+.+..+.........+.|+||+++++.++.|+.|.++|+.+++.+.+++.-. ...++++++
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~- 87 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSP- 87 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE---
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcC-
Confidence 556678999999999999988887655555567899999999999999999999999999998887544 456788887
Q ss_pred CCCEEE-EEeCCCcEEEEEccCCeeeeEEeec--------CceeEEEEccCCCEEEEEeC-CCcEEEEECCCCeeeEEEe
Q 017314 184 SSRHVV-SAAYDRTLKVWDLHKGYCVNTIIFH--------SNCNALAFSMDGQTIFSGHI-DGNLRLWDIQTGKLLSEVA 253 (373)
Q Consensus 184 ~~~~~~-s~s~D~~i~vwd~~~~~~~~~~~~~--------~~~~~~~~~~~g~~l~sg~~-dg~i~iwd~~~~~~~~~~~ 253 (373)
++++++ ++..++++.++|.++.+.++.+... ..+.++..+|....++..-. .+.|-+.|....+.+..-.
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~ 167 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT 167 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE
T ss_pred CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee
Confidence 566666 4557999999999999888877543 23567777888886665555 4788888877654443222
Q ss_pred cccccceEEEEEcCCCCEEEE-eeCCCeEEEEEccccceeeeeeecCCeeecCee--------e-eEECCCCcEEEEEeC
Q 017314 254 AHSLAAVTSISLSRSGNIILT-SGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS--------R-SCISPDESYVAAGSA 323 (373)
Q Consensus 254 ~~~~~~v~~~~~~~~~~~l~s-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--------~-~~~s~~~~~l~sgs~ 323 (373)
...........|+|++++++. ....+.+-++|..+.+....+.....+...... . ...+..+.+.++.-.
T Consensus 168 i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig 247 (369)
T PF02239_consen 168 IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIG 247 (369)
T ss_dssp EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred ecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceeccccc
Confidence 222245678899999998765 456778999999887766554321111111100 0 011222333333333
Q ss_pred CCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEE----eCCCeEEEcC
Q 017314 324 DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASA----DKNGVVCVWT 373 (373)
Q Consensus 324 Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~----s~dg~i~iW~ 373 (373)
...+.+|+....+.++++....++ .-+.-+|+++++... ...+.|.++|
T Consensus 248 ~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 248 TDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp --TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred CCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence 345778999999999999877777 778889999999877 3346676653
No 221
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.1e-13 Score=128.68 Aligned_cols=235 Identities=18% Similarity=0.232 Sum_probs=151.4
Q ss_pred CcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCC
Q 017314 110 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS---NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR 186 (373)
Q Consensus 110 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 186 (373)
..|.++|.. +.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +......+....|+|....
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 457777764 33344455667788899999999999877753 359999999887543 3333344567789985444
Q ss_pred EEEEEeCCCcEEEEEc--cCCeeeeEEeecC-ceeEEEEccCCCEEEEEeC-CCcEEEEEC--CCCeeeEEEecccccce
Q 017314 187 HVVSAAYDRTLKVWDL--HKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHI-DGNLRLWDI--QTGKLLSEVAAHSLAAV 260 (373)
Q Consensus 187 ~~~s~s~D~~i~vwd~--~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sg~~-dg~i~iwd~--~~~~~~~~~~~~~~~~v 260 (373)
.+++.+.++...+|.+ ..+. ...+..+. ......|+|||+.|+..+. +|...+|.+ .++.. ..+.... ...
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g-~~~ 330 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTG-SYN 330 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCC-CCc
Confidence 4457788888777765 3333 23332222 2456789999998875553 566666654 44432 2232221 234
Q ss_pred EEEEEcCCCCEEEEeeCCC---eEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCC---cEEEEEccC
Q 017314 261 TSISLSRSGNIILTSGRDN---LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG---SVYIWSISK 334 (373)
Q Consensus 261 ~~~~~~~~~~~l~s~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg---~i~iwd~~~ 334 (373)
...+|+|+|++|+..+.++ .+.+||+.+.+.. .+.... .. ....++|||++|+..+.++ .+++.++ +
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~~-~~----~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~ 403 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDTT-RD----ESPSFAPNGRYILYATQQGGRSVLAAVSS-D 403 (427)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCCC-Cc----cCceECCCCCEEEEEEecCCCEEEEEEEC-C
Confidence 4678999999998776554 5889998776543 222111 11 1246899999988877554 3555555 4
Q ss_pred ceEEEEeccCCccEEEEEEcCC
Q 017314 335 ADIVRTLKEHTAPVLSCSWSGL 356 (373)
Q Consensus 335 ~~~~~~l~~h~~~V~~~~~s~~ 356 (373)
+.....+..+.+.+...+|||-
T Consensus 404 g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 404 GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCceEEeecCCCCCCCCccCCC
Confidence 6666667667788888999984
No 222
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.64 E-value=4.8e-14 Score=118.76 Aligned_cols=246 Identities=15% Similarity=0.297 Sum_probs=179.9
Q ss_pred ceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEe-CCCCceeeecc-ccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 017314 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWD-TNTGSLSSTLY-GCLGSVLDLAITHDNRSVIAASSSNNLYVW 157 (373)
Q Consensus 80 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~~i~iw 157 (373)
..+.++||...|+....-|-..-+++.+.|.++|||- .+.++.-..++ ....+++++.+.++.+.|+.+-..+++.-+
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 3567889999999999989889999999999999994 33444333332 234678889999999999999999999887
Q ss_pred EcC----CCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEe
Q 017314 158 DVN----SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGH 233 (373)
Q Consensus 158 d~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~ 233 (373)
.+. .....+....|...|..+-|+. ...++++++.|+.+.---.+.+..+..+.......++.+.-. +.+.|.
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd 172 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGD 172 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecc
Confidence 653 3445667788999999988875 577899999999887666666655544444333333333222 666777
Q ss_pred CCCcEEEEEC--CCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccc-eeeeeeecCCeeecCeeeeE
Q 017314 234 IDGNLRLWDI--QTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE-VCGSLRATGNRVASNWSRSC 310 (373)
Q Consensus 234 ~dg~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~ 310 (373)
..|.|.+-.+ ..-.++.++.+|. ..+++++|+|....|.+|..|..+.+||+.-.. ....+.++...+.. ++
T Consensus 173 ~~gqvt~lr~~~~~~~~i~~~~~h~-~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~----l~ 247 (404)
T KOG1409|consen 173 HSGQITMLKLEQNGCQLITTFNGHT-GEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQA----LS 247 (404)
T ss_pred cccceEEEEEeecCCceEEEEcCcc-cceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhh----hh
Confidence 7777766554 3456677888886 899999999999999999999999999986433 22334444444332 23
Q ss_pred ECCCCcEEEEEeCCCcEEEEEcc
Q 017314 311 ISPDESYVAAGSADGSVYIWSIS 333 (373)
Q Consensus 311 ~s~~~~~l~sgs~Dg~i~iwd~~ 333 (373)
.-+--+.+.+++.||.|-+|+++
T Consensus 248 ~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 248 YAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhhheeeeeccCCCeEEEEecc
Confidence 33455778899999999999986
No 223
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=3.1e-13 Score=126.16 Aligned_cols=234 Identities=14% Similarity=0.151 Sum_probs=154.9
Q ss_pred CcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCC
Q 017314 110 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS---SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR 186 (373)
Q Consensus 110 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 186 (373)
..|.+||.... ....+..+...+.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+...+....|+|....
T Consensus 182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 47888888544 34556667788999999999999887764 468999999888653 44556667778889985444
Q ss_pred EEEEEeCCCc--EEEEEccCCeeeeEEeec-CceeEEEEccCCCEEEEEeC-CC--cEEEEECCCCeeeEEEecccccce
Q 017314 187 HVVSAAYDRT--LKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHI-DG--NLRLWDIQTGKLLSEVAAHSLAAV 260 (373)
Q Consensus 187 ~~~s~s~D~~--i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v 260 (373)
.+++.+.++. |.+||+.++...+ +..+ .......|+|||+.|+..+. +| .|.++|+.+++. ..+..+. ..+
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~-~~~ 336 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGG-GRY 336 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCC-Ccc
Confidence 4567777766 6667888776533 3222 23456899999998886653 33 588888876654 3443332 456
Q ss_pred EEEEEcCCCCEEEEeeCC---CeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCC------CcEEEEE
Q 017314 261 TSISLSRSGNIILTSGRD---NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD------GSVYIWS 331 (373)
Q Consensus 261 ~~~~~~~~~~~l~s~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~D------g~i~iwd 331 (373)
....|+|+|+.|+..+.+ ..+.+||+..... ..+.. ... .....++|||++|+..+.+ ..++++|
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~----~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d 410 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFL----VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD 410 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCC----CCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence 678899999998876543 3577788754332 22221 111 1234689999988765442 2577888
Q ss_pred ccCceEEEEeccCCccEEEEEEcCC
Q 017314 332 ISKADIVRTLKEHTAPVLSCSWSGL 356 (373)
Q Consensus 332 ~~~~~~~~~l~~h~~~V~~~~~s~~ 356 (373)
+..+.. ..+. ..+.+...+|||-
T Consensus 411 l~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 411 LTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCCCce-EEcc-CCCCccCcccCCC
Confidence 766544 3444 3445677888873
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=2.1e-12 Score=107.96 Aligned_cols=267 Identities=15% Similarity=0.268 Sum_probs=171.6
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeecccccc--ceEEEEEcCCCCEE-EEEeCC------CcEEEEEcCCC
Q 017314 92 ASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLG--SVLDLAITHDNRSV-IAASSS------NNLYVWDVNSG 162 (373)
Q Consensus 92 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l-~s~s~d------~~i~iwd~~~~ 162 (373)
.+++|+.|..-++.|-.+ -.|||+.+--+.......+.+ .+..+-|- .++| +.|+.+ +.+.|||-...
T Consensus 9 lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 9 LSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred eEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecccC
Confidence 348999999888877655 569998865322111111111 11112221 2233 333333 46999997777
Q ss_pred eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCC-eeeeEEeecCceeE-EEEcc--CCCEEEE-EeCCCc
Q 017314 163 RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFHSNCNA-LAFSM--DGQTIFS-GHIDGN 237 (373)
Q Consensus 163 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~-~~~~~~~~~~~~~~-~~~~~--~g~~l~s-g~~dg~ 237 (373)
+++.++. ...+|.++.+.+ ..++. --.+.|.||..... +.++.+....+.+. +++.| +..+|+- |-.-|.
T Consensus 86 ~~i~el~-f~~~I~~V~l~r---~riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRR---DRIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cEEEEEE-eccceeeEEEcC---CeEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 7777665 567888888765 23443 34678999988733 34444433332222 22333 3334442 666799
Q ss_pred EEEEECCCCee--eEEEecccccceEEEEEcCCCCEEEEeeCCCe-EEEEEccccceeeeeeecCCeeecCeeeeEECCC
Q 017314 238 LRLWDIQTGKL--LSEVAAHSLAAVTSISLSRSGNIILTSGRDNL-HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD 314 (373)
Q Consensus 238 i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 314 (373)
|+|-|+...+. ...+..|. ..|.+++++.+|..+||+|..|+ |++||..+++.+.+++.-... .....++|||+
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~-s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~--A~iy~iaFSp~ 237 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHD-SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR--ADIYCIAFSPN 237 (346)
T ss_pred EEEEEhhhcCcCCceEEEccc-CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch--heEEEEEeCCC
Confidence 99999976554 46677776 89999999999999999999886 899999999988887643222 23345789999
Q ss_pred CcEEEEEeCCCcEEEEEccCceEE------------------------EEeccCCccEEEEEEcCCCCcEEEEeCCCeE
Q 017314 315 ESYVAAGSADGSVYIWSISKADIV------------------------RTLKEHTAPVLSCSWSGLGKPLASADKNGVV 369 (373)
Q Consensus 315 ~~~l~sgs~Dg~i~iwd~~~~~~~------------------------~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i 369 (373)
.++||+.|+.|+|.|+.+.....- ..++-..++..-++|..+.+-++....||.-
T Consensus 238 ~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy 316 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSY 316 (346)
T ss_pred ccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcE
Confidence 999999999999999998652210 0111123455666776665666666667654
No 225
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.1e-13 Score=123.78 Aligned_cols=241 Identities=16% Similarity=0.237 Sum_probs=175.3
Q ss_pred ccCcEEEEEEcCCCCEE-EEeeCCCcEEEEeCCCCceeee----------------------------ccccc--c----
Q 017314 87 HEGGCASILFEYNSARL-ISGGQDKSIKLWDTNTGSLSST----------------------------LYGCL--G---- 131 (373)
Q Consensus 87 h~~~v~~~~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~----------------------------~~~~~--~---- 131 (373)
|....+.+..+|||+++ +||-.--.|++||+.+-.+... +.-|. +
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR 129 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence 55667789999999976 5666788999999875432110 00010 0
Q ss_pred -----ceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCe
Q 017314 132 -----SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY 206 (373)
Q Consensus 132 -----~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~ 206 (373)
.-.+++++.-..-|+.++....|+-.+++.|+.+.-|......++++.+++. ..+|++|+.||.|-.||.+...
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~-hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE-HGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCc-cceEEecccCceEEEecchhhh
Confidence 1122333333445777777788999999999988888888889999999874 4578888889999999998876
Q ss_pred eeeEEeecCc------------eeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCC--CCEE
Q 017314 207 CVNTIIFHSN------------CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS--GNII 272 (373)
Q Consensus 207 ~~~~~~~~~~------------~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l 272 (373)
.+.++..... ++++.|+.+|-.+++|+.+|.+.|||+++.+++..-......+|..+.|.+. ++.+
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v 288 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKV 288 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceE
Confidence 6665544332 7899999999999999999999999999988765443333467888999775 3445
Q ss_pred EEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccC
Q 017314 273 LTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK 334 (373)
Q Consensus 273 ~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~ 334 (373)
++. ....++|||-.+++....+... +.++..|+-|++.++.+|-.++.+-.|=+..
T Consensus 289 ~S~-Dk~~~kiWd~~~Gk~~asiEpt-----~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 289 VSM-DKRILKIWDECTGKPMASIEPT-----SDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred Eec-chHHhhhcccccCCceeecccc-----CCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 554 4467899998887765554332 2344578889999999999998877776654
No 226
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.6e-14 Score=126.65 Aligned_cols=251 Identities=19% Similarity=0.283 Sum_probs=182.7
Q ss_pred eeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEe-ecCCCcEEEEEEeeCC-CCEEEEEeCCCcEEEE
Q 017314 123 SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL-TGHTDKVCAVDVSKIS-SRHVVSAAYDRTLKVW 200 (373)
Q Consensus 123 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~-~~~~~s~s~D~~i~vw 200 (373)
...+.+|.+-|..|.|...|..|+++|.|..|.+||...+++...+ .||...|....|-|.. ...+++++.||.+++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 3456789999999999999999999999999999999888766555 5799888877777754 4568999999999987
Q ss_pred Ecc-CCeeeeEE---eecCceeEEEEccCCC-EEEEEeCCCcEEEEECCCCeeeEEEec--ccc---cceEEEEEcCCCC
Q 017314 201 DLH-KGYCVNTI---IFHSNCNALAFSMDGQ-TIFSGHIDGNLRLWDIQTGKLLSEVAA--HSL---AAVTSISLSRSGN 270 (373)
Q Consensus 201 d~~-~~~~~~~~---~~~~~~~~~~~~~~g~-~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~---~~v~~~~~~~~~~ 270 (373)
.+. ++++..+. .++..+..++.-|+.. -+++++.|+.+.-+|++.+.....+.. +.. -...+++.+|.+.
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 664 34433222 3445688888888654 578999999999999988755444322 111 2567889999776
Q ss_pred -EEEEeeCCCeEEEEEcccccee------eeeeecC--CeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccC--c----
Q 017314 271 -IILTSGRDNLHNLFDIRSLEVC------GSLRATG--NRVASNWSRSCISPDESYVAAGSADGSVYIWSISK--A---- 335 (373)
Q Consensus 271 -~l~s~~~d~~i~~~d~~~~~~~------~~~~~~~--~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~--~---- 335 (373)
.+++++.|...++||.+..... .++..+. ......+..+.++.++.-|.+.-.|-.|+++.-.- |
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence 7899999999999998865432 2221111 01112334567887777666677777899995432 2
Q ss_pred ------eEEEE-eccCCc--cEEEEE-EcCCCCcEEEEeCCCeEEEcC
Q 017314 336 ------DIVRT-LKEHTA--PVLSCS-WSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 336 ------~~~~~-l~~h~~--~V~~~~-~s~~g~~l~s~s~dg~i~iW~ 373 (373)
..++. ++||.. .|..+- |.|...|++|||.=|.|.||+
T Consensus 375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 22333 788864 577776 678889999999999999995
No 227
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.60 E-value=1.5e-13 Score=113.07 Aligned_cols=146 Identities=17% Similarity=0.328 Sum_probs=102.4
Q ss_pred EEEEccCCCEEEEEeC----------CCcEEEEECCC-CeeeEEEecccccceEEEEEcCCCCEEEEe--eCCCeEEEEE
Q 017314 219 ALAFSMDGQTIFSGHI----------DGNLRLWDIQT-GKLLSEVAAHSLAAVTSISLSRSGNIILTS--GRDNLHNLFD 285 (373)
Q Consensus 219 ~~~~~~~g~~l~sg~~----------dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~~d~~i~~~d 285 (373)
.+.|+|+|.+|+.-.. -|...+|-++. +..+..+.....++|.+++|+|+|+.++.. ..+..+.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 4668888877663222 23355555532 233444444333579999999999987554 4577999999
Q ss_pred ccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeC---CCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEE
Q 017314 286 IRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA---DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLAS 362 (373)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~---Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s 362 (373)
++ .+.+..+.. ...+.+.++|+|++|++|+. .|.|.+||+.+.+.+.... |. .++.++|||||++|++
T Consensus 90 ~~-~~~i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 90 VK-GKKIFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLAT 160 (194)
T ss_pred Cc-ccEeEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEE
Confidence 97 444444432 12234679999999999874 4679999999988887764 33 4789999999999999
Q ss_pred EeC------CCeEEEcC
Q 017314 363 ADK------NGVVCVWT 373 (373)
Q Consensus 363 ~s~------dg~i~iW~ 373 (373)
++. |..++||+
T Consensus 161 a~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWS 177 (194)
T ss_pred EEeccceeccccEEEEE
Confidence 874 68888884
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=4.5e-13 Score=124.56 Aligned_cols=205 Identities=20% Similarity=0.254 Sum_probs=133.9
Q ss_pred CcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCC---CcEEEEEccCCeeeeEEeecCceeEEEEccCCCE
Q 017314 152 NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD---RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQT 228 (373)
Q Consensus 152 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~ 228 (373)
..+.++|.. +.....+..+...+.+.+|+| +++.++..+.+ ..|.+||+.++...............+|+|||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 357777764 444445566778888999998 56677666543 4599999998865443223344567899999998
Q ss_pred EE-EEeCCCcEEEEE--CCCCeeeEEEecccccceEEEEEcCCCCEEEEeeC-CCeEEEEEcc--ccceeeeeeecCCee
Q 017314 229 IF-SGHIDGNLRLWD--IQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR-DNLHNLFDIR--SLEVCGSLRATGNRV 302 (373)
Q Consensus 229 l~-sg~~dg~i~iwd--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~~~d~~--~~~~~~~~~~~~~~~ 302 (373)
|+ +.+.+|..++|. +.++. ...+..+. .......|+|||+.|+..+. ++...+|.+. .... ..+...+...
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~ 330 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYN 330 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCc
Confidence 86 567788766665 44443 44454433 44567889999998776553 4566666553 3221 2222111111
Q ss_pred ecCeeeeEECCCCcEEEEEeCCC---cEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCC
Q 017314 303 ASNWSRSCISPDESYVAAGSADG---SVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNG 367 (373)
Q Consensus 303 ~~~~~~~~~s~~~~~l~sgs~Dg---~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg 367 (373)
....++|||++|+..+.++ .|++||+.+++... +..+ ......+|+|||++|+.++.++
T Consensus 331 ----~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 331 ----TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred ----CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecC
Confidence 1246899999998777654 69999998876543 3322 2346789999999988877654
No 229
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.58 E-value=3.1e-12 Score=107.43 Aligned_cols=272 Identities=15% Similarity=0.194 Sum_probs=183.8
Q ss_pred CcEEEEEEcCCCCEEE-EeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCeeEE
Q 017314 89 GGCASILFEYNSARLI-SGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRS-VIAASSSNNLYVWDVNSGRVRH 166 (373)
Q Consensus 89 ~~v~~~~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~s~d~~i~iwd~~~~~~~~ 166 (373)
..|.-+.|..|.-+++ .+..|+.|.+|++...+-...+.....++.+..|+|||+. |.+...+-.|.||.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 3455577877776554 4567889999999887777777777788999999999965 5677788899999998876543
Q ss_pred EeecCCCcEEEEEEeeCCCCEEEEEeC------------------------------------CCcEEEEEccCCeeeeE
Q 017314 167 TLTGHTDKVCAVDVSKISSRHVVSAAY------------------------------------DRTLKVWDLHKGYCVNT 210 (373)
Q Consensus 167 ~~~~h~~~v~~~~~~~~~~~~~~s~s~------------------------------------D~~i~vwd~~~~~~~~~ 210 (373)
++..+..+..++|++ ++.+.+-++. +..+.+||---...+..
T Consensus 129 -~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 129 -LPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred -ecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 222233456666766 4444333221 22345666433222223
Q ss_pred EeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeE----------------------------------------
Q 017314 211 IIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLS---------------------------------------- 250 (373)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~---------------------------------------- 250 (373)
+.....+..++|+|.+++|+.|+.|+.+|+.+--+-+...
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 3334567889999999999999999999986532211100
Q ss_pred --------------------EEec-----ccccceEEEEEcCCCCEEEEeeC--CCeEEEEEccccceeeeeeecCCeee
Q 017314 251 --------------------EVAA-----HSLAAVTSISLSRSGNIILTSGR--DNLHNLFDIRSLEVCGSLRATGNRVA 303 (373)
Q Consensus 251 --------------------~~~~-----~~~~~v~~~~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~ 303 (373)
.+.. .....+.-++|++|..++++-.. -+.+-+||++..+....+.......
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~pir- 365 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIR- 365 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcccee-
Confidence 0000 00123557899999999998654 3678899999877655443333222
Q ss_pred cCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCe
Q 017314 304 SNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGV 368 (373)
Q Consensus 304 ~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~ 368 (373)
....+|....|+.+....++++|.......+..- +..-.|..+.|.-+|..|+-.|.|..
T Consensus 366 ----af~WdP~~prL~vctg~srLY~W~psg~~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 366 ----AFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ----EEEeCCCCceEEEEcCCceEEEEcCCCceEEecC-CCCceeeeEEecCCCcEEEEEcCCce
Confidence 2346888888888888888999988765555442 22356899999999999999999864
No 230
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=3.1e-12 Score=114.48 Aligned_cols=269 Identities=13% Similarity=0.229 Sum_probs=159.0
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEE-----EeCC-----CcEEEEE
Q 017314 89 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIA-----ASSS-----NNLYVWD 158 (373)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-----~s~d-----~~i~iwd 158 (373)
.++...+++++|.+++- +.+..|+|++..++..+.+... ..+.++.|+|.+.+|.+ ...+ -.+++|+
T Consensus 35 ~~~~v~~~S~~G~lfA~-~~~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAY-SDNQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CcceeEEEcCCCcEEEE-EcCCeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 44677888888876665 6678999999988864433332 27889999999998864 2233 3467999
Q ss_pred cCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeE-------------------
Q 017314 159 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNA------------------- 219 (373)
Q Consensus 159 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~------------------- 219 (373)
+.++.....+......-++..|+..+ .++.--..+.+.+|++..............++.
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dE--sl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDE--SLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred eccceehhheehhhhcCcccccccch--hhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCC
Confidence 98865444443322222333343321 122111223344444432111111111112222
Q ss_pred ---------------------------------EEEccCCCEEE---EEeCC---------CcEEEEECCCCeeeEEEec
Q 017314 220 ---------------------------------LAFSMDGQTIF---SGHID---------GNLRLWDIQTGKLLSEVAA 254 (373)
Q Consensus 220 ---------------------------------~~~~~~g~~l~---sg~~d---------g~i~iwd~~~~~~~~~~~~ 254 (373)
+.|++-|.-|+ +..-| .++++.++....+.-.+
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-- 267 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-- 267 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec--
Confidence 33444333221 11112 24555555532222222
Q ss_pred ccccceEEEEEcCCCCEEEEe--eCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCC---CcEEE
Q 017314 255 HSLAAVTSISLSRSGNIILTS--GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD---GSVYI 329 (373)
Q Consensus 255 ~~~~~v~~~~~~~~~~~l~s~--~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~D---g~i~i 329 (373)
...++|.++.|+|+++-++++ -.-..+.+||++-. ++..+.. .+.+.+.|+|.|++|+.++-+ |.+-|
T Consensus 268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df~e------gpRN~~~fnp~g~ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDFPE------GPRNTAFFNPHGNIILLAGFGNLPGDMEV 340 (566)
T ss_pred CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeCCC------CCccceEECCCCCEEEEeecCCCCCceEE
Confidence 224789999999999876654 34567889998743 3333221 122345689999999987765 89999
Q ss_pred EEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeC------CCeEEEcC
Q 017314 330 WSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADK------NGVVCVWT 373 (373)
Q Consensus 330 wd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~------dg~i~iW~ 373 (373)
||+.+.+++..+...... -+.|+|||++|.|+.. |..++||+
T Consensus 341 wDv~n~K~i~~~~a~~tt--~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 341 WDVPNRKLIAKFKAANTT--VFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred EeccchhhccccccCCce--EEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 999998888887765544 4899999999988765 46677774
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=3.6e-12 Score=118.47 Aligned_cols=205 Identities=15% Similarity=0.148 Sum_probs=135.3
Q ss_pred cEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEe---CCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEE
Q 017314 153 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAA---YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTI 229 (373)
Q Consensus 153 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s---~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l 229 (373)
.|.+||....... .+..+...+....|+| +++.++..+ .+..+.+||+.++................|+|||+.|
T Consensus 180 ~l~~~d~dg~~~~-~lt~~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCCE-EeecCCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEE
Confidence 6889998765443 3445667888999998 456666443 3457999999887644332233345568999999988
Q ss_pred EEE-eCCC--cEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeC-CCeEEEE--EccccceeeeeeecCCeee
Q 017314 230 FSG-HIDG--NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR-DNLHNLF--DIRSLEVCGSLRATGNRVA 303 (373)
Q Consensus 230 ~sg-~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~~~--d~~~~~~~~~~~~~~~~~~ 303 (373)
+.. +.+| .|.+||+.+++... +..+. ..+....|+|+|+.|+..+. ++...+| |+...+. ..+.......
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~-lt~~~-~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~- 333 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQ-VTDGR-SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQN- 333 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEE-ccCCC-CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCc-
Confidence 754 4455 48899998876543 33332 46788999999998876654 3444555 5544432 2222222111
Q ss_pred cCeeeeEECCCCcEEEEEeCC---CcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCe
Q 017314 304 SNWSRSCISPDESYVAAGSAD---GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGV 368 (373)
Q Consensus 304 ~~~~~~~~s~~~~~l~sgs~D---g~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~ 368 (373)
....++|||++|+..+.+ ..|++||+.+++.. .+... .......|||||++|+.++.++.
T Consensus 334 ---~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 334 ---QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred ---cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCC
Confidence 235689999999876543 35889999887643 34322 22356889999999999988865
No 232
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.56 E-value=3.4e-12 Score=118.93 Aligned_cols=234 Identities=18% Similarity=0.183 Sum_probs=149.4
Q ss_pred CcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCC
Q 017314 110 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS---NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR 186 (373)
Q Consensus 110 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 186 (373)
..|.++|..... ...+..+...+.+.+|+|||++|+.++.+ ..|++||+.+++... +..+...+.+..|+|....
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 467888875433 34455566678889999999999887654 479999999886543 3345555667788884434
Q ss_pred EEEEEeCCC--cEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeC-CC--cEEEEECCCCeeeEEEecccccceE
Q 017314 187 HVVSAAYDR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI-DG--NLRLWDIQTGKLLSEVAAHSLAAVT 261 (373)
Q Consensus 187 ~~~s~s~D~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~ 261 (373)
++++.+.++ .|.+||+.++................|+|||+.|+..+. ++ .|.++|+.+++.. .+..+. ....
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~-~~~~ 325 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRG-GYNA 325 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCC-CCcc
Confidence 445655554 588889887654322222222345689999998876554 33 5788888776643 333332 4567
Q ss_pred EEEEcCCCCEEEEeeCCC---eEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCC---cEEEEEccCc
Q 017314 262 SISLSRSGNIILTSGRDN---LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG---SVYIWSISKA 335 (373)
Q Consensus 262 ~~~~~~~~~~l~s~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg---~i~iwd~~~~ 335 (373)
...|+|++++++.++.+. .+.+||+.+... ..+..... . ....++|||++|+..+.++ .+++.+. ++
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~-~----~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g 398 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGL-D----ESPSFAPNGRMILYATTRGGRGVLGLVST-DG 398 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCCC-C----CCceECCCCCEEEEEEeCCCcEEEEEEEC-CC
Confidence 789999999998887775 788888876432 22221111 1 1236899999988877654 3555443 34
Q ss_pred eEEEEeccCCccEEEEEEc
Q 017314 336 DIVRTLKEHTAPVLSCSWS 354 (373)
Q Consensus 336 ~~~~~l~~h~~~V~~~~~s 354 (373)
.....+..+.+.+...+||
T Consensus 399 ~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 399 RFRARLPLGNGDVREPAWS 417 (417)
T ss_pred ceeeECCCCCCCcCCCCCC
Confidence 4455555455556655554
No 233
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=3.8e-12 Score=118.89 Aligned_cols=204 Identities=20% Similarity=0.206 Sum_probs=135.9
Q ss_pred CcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeC---CCcEEEEEccCCeeeeEEeecCceeEEEEccCCCE
Q 017314 152 NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY---DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQT 228 (373)
Q Consensus 152 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~---D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~ 228 (373)
..|.++|..... ...+..|...+....|+| +++.|+..+. +..|.+||+.++...........+...+|+|||+.
T Consensus 182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCCCC-cEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence 378889885544 455667888999999998 5667766553 46899999988865432223334567899999998
Q ss_pred EE-EEeCCCc--EEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeC-CC--eEEEEEccccceeeeeeecCCee
Q 017314 229 IF-SGHIDGN--LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR-DN--LHNLFDIRSLEVCGSLRATGNRV 302 (373)
Q Consensus 229 l~-sg~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~ 302 (373)
|+ +.+.++. |.+||+.+++. ..+..+. .......|+|||+.|+..+. ++ .+.++|+...+. ..+......
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~-~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~- 335 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSP-AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGR- 335 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCC-CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCc-
Confidence 75 5566665 77779887765 3454443 45667899999998876653 33 577777765433 223222111
Q ss_pred ecCeeeeEECCCCcEEEEEeCC---CcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCC
Q 017314 303 ASNWSRSCISPDESYVAAGSAD---GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN 366 (373)
Q Consensus 303 ~~~~~~~~~s~~~~~l~sgs~D---g~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~d 366 (373)
+....++|||++|+..+.+ ..|.+||+..+.. ..+.. ...+....|+|||++|+..+.+
T Consensus 336 ---~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 336 ---YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred ---ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEcc
Confidence 1224689999999876543 3688888765443 33332 2346788999999988776543
No 234
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.56 E-value=8.9e-13 Score=108.49 Aligned_cols=148 Identities=15% Similarity=0.274 Sum_probs=103.9
Q ss_pred EEEEcCCCCEEEEEeC----------CCcEEEEEcCC-CeeEEEeec-CCCcEEEEEEeeCCCCEE-EEEeCCCcEEEEE
Q 017314 135 DLAITHDNRSVIAASS----------SNNLYVWDVNS-GRVRHTLTG-HTDKVCAVDVSKISSRHV-VSAAYDRTLKVWD 201 (373)
Q Consensus 135 ~~~~~~~~~~l~s~s~----------d~~i~iwd~~~-~~~~~~~~~-h~~~v~~~~~~~~~~~~~-~s~s~D~~i~vwd 201 (373)
.+.|+++|.+|+.-.. -+...+|.++. +.....+.- ...+|..++|+|....++ ++|..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 4678888877654322 12344555422 233334432 345799999999544443 3455788999999
Q ss_pred ccCCeeeeEEeecCceeEEEEccCCCEEEEEeC---CCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeC-
Q 017314 202 LHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI---DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR- 277 (373)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~- 277 (373)
++ +..+.++. ....+.+.|+|+|++|+.|+. .|.|.+||.++.+.+..... ..++.++|+|+|++|+++..
T Consensus 90 ~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~---~~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 90 VK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH---SDATDVEWSPDGRYLATATTS 164 (194)
T ss_pred Cc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc---CcEEEEEEcCCCCEEEEEEec
Confidence 96 55555543 456789999999999998875 46799999998888766543 35789999999999998864
Q ss_pred -----CCeEEEEEcc
Q 017314 278 -----DNLHNLFDIR 287 (373)
Q Consensus 278 -----d~~i~~~d~~ 287 (373)
|+.++||+..
T Consensus 165 ~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQ 179 (194)
T ss_pred cceeccccEEEEEec
Confidence 6778888874
No 235
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.56 E-value=1.3e-10 Score=105.13 Aligned_cols=268 Identities=17% Similarity=0.273 Sum_probs=165.0
Q ss_pred EEEeeCC----CcEEEEeC--CCCcee--eeccccccceEEEEEcCCCCEEEEEeC----CCcEEEEEcCC--Cee--EE
Q 017314 103 LISGGQD----KSIKLWDT--NTGSLS--STLYGCLGSVLDLAITHDNRSVIAASS----SNNLYVWDVNS--GRV--RH 166 (373)
Q Consensus 103 l~s~s~D----~~v~iwd~--~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~s~----d~~i~iwd~~~--~~~--~~ 166 (373)
++.|+.. +.|.+|++ +++++. ..+ ........++++|++++|+++.. ++.|..|++.. +++ +.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 3445554 67888877 444432 221 12334556889999999999887 46888888765 333 33
Q ss_pred EeecCCCcEEEEEEeeCCCCEEEEEe-CCCcEEEEEccC-CeeeeE---Eee-----------cCceeEEEEccCCCEEE
Q 017314 167 TLTGHTDKVCAVDVSKISSRHVVSAA-YDRTLKVWDLHK-GYCVNT---IIF-----------HSNCNALAFSMDGQTIF 230 (373)
Q Consensus 167 ~~~~h~~~v~~~~~~~~~~~~~~s~s-~D~~i~vwd~~~-~~~~~~---~~~-----------~~~~~~~~~~~~g~~l~ 230 (373)
.........+.+++++ ++++++.+. .+++|.++++.. +..... +.+ ...+-++.++|+|++++
T Consensus 81 ~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp EEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred eeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 3332334455677777 566776665 599999999976 433222 111 12356899999999988
Q ss_pred EEeC-CCcEEEEECCCCe--e--eEEEecccccceEEEEEcCCCCEEEEe-eCCCeEEEEEcc--cc--ceeeeeeec--
Q 017314 231 SGHI-DGNLRLWDIQTGK--L--LSEVAAHSLAAVTSISLSRSGNIILTS-GRDNLHNLFDIR--SL--EVCGSLRAT-- 298 (373)
Q Consensus 231 sg~~-dg~i~iwd~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~i~~~d~~--~~--~~~~~~~~~-- 298 (373)
+... ...|.+|++.... + ...+..........+.|+|+++++... -.++.+.++++. .+ +....+...
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred EEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 7643 3479999987654 3 223333444678899999999987655 457889999987 22 222222211
Q ss_pred CCeeecCeeeeEECCCCcEEEEEe-CCCcEEEEEcc--CceE--EEEeccCCccEEEEEEcCCCCcEEEEe-CCCeEEEc
Q 017314 299 GNRVASNWSRSCISPDESYVAAGS-ADGSVYIWSIS--KADI--VRTLKEHTAPVLSCSWSGLGKPLASAD-KNGVVCVW 372 (373)
Q Consensus 299 ~~~~~~~~~~~~~s~~~~~l~sgs-~Dg~i~iwd~~--~~~~--~~~l~~h~~~V~~~~~s~~g~~l~s~s-~dg~i~iW 372 (373)
.......-..+.++|||++|.++. .+..|.+|++. ++++ +..+......-..++++|+|++|+.+. .++.|.+|
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence 111111223467999999887654 56789999993 2333 334433333468999999999988776 45677776
No 236
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=9.8e-13 Score=112.71 Aligned_cols=236 Identities=15% Similarity=0.209 Sum_probs=170.4
Q ss_pred cceEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCeeEE------EeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 017314 131 GSVLDLAITHDNR--SVIAASSSNNLYVWDVNSGRVRH------TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL 202 (373)
Q Consensus 131 ~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~------~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~ 202 (373)
..+.+++|..++. .+...+.|..+............ +....+.+|..+.. ....+++|-.+|.+.+|..
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~---~dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL---ADGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh---cCCEEEEEecCCcEEEEec
Confidence 3455666655553 45555567777776665544332 23344556655543 3457999999999999998
Q ss_pred cCCe----eeeEEeecCceeEEEEccCCCEEE-EEeCC--CcEEEEECCCCeeeEEEeccc--------ccceEEEEEcC
Q 017314 203 HKGY----CVNTIIFHSNCNALAFSMDGQTIF-SGHID--GNLRLWDIQTGKLLSEVAAHS--------LAAVTSISLSR 267 (373)
Q Consensus 203 ~~~~----~~~~~~~~~~~~~~~~~~~g~~l~-sg~~d--g~i~iwd~~~~~~~~~~~~~~--------~~~v~~~~~~~ 267 (373)
..+- .+..+..+.....+.-+|.-.+++ +|+.. ..+++||+...+.+..-..-. .-.++++.|-+
T Consensus 133 k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE 212 (412)
T ss_pred cCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence 7432 233344455566666677555555 58888 789999998876554322111 13577889988
Q ss_pred C--CCEEEEeeCCCeEEEEEcccc-ceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEE-ecc
Q 017314 268 S--GNIILTSGRDNLHNLFDIRSL-EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT-LKE 343 (373)
Q Consensus 268 ~--~~~l~s~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~-l~~ 343 (373)
. ...|+++..-+.+++||.+.. +++..+....+.+ +.....|+|.+|.+|..-|.+..||+..++.... +++
T Consensus 213 g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~i----s~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 213 GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPI----SSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred CCCCceEEEEecceeEEEecCcccCcceeEeccccCcc----eeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 7 889999999999999999854 3455554443333 3356789999999999999999999999988766 899
Q ss_pred CCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 344 HTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 344 h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
-.++|.++..+|.+++||++|-|..+||+|
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 999999999999999999999999999985
No 237
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.8e-11 Score=104.16 Aligned_cols=267 Identities=15% Similarity=0.210 Sum_probs=162.7
Q ss_pred HHHhcccccceeeccccCccccccccccccceEEec-CccCcEEEEEEcCCCC-EEEEeeCCCcEEEEeCCCC----ce-
Q 017314 50 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKIN-AHEGGCASILFEYNSA-RLISGGQDKSIKLWDTNTG----SL- 122 (373)
Q Consensus 50 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~s~s~D~~v~iwd~~~~----~~- 122 (373)
-.++....|.++|..+.... +...++ .-...|++++|-|.+. .|+.|+ -+-|.+|..... ..
T Consensus 111 ~~fava~nddvVriy~ksst----------~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~r~~ 179 (445)
T KOG2139|consen 111 IAFAVATNDDVVRIYDKSST----------CPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNANRNI 179 (445)
T ss_pred hhhhhhccCcEEEEeccCCC----------CCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCccccccccc
Confidence 34555566777777655431 111222 2346799999999765 455555 567899976421 11
Q ss_pred ---------eeeccccccceEEEEEcCCCCEEEEEeCC-CcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEe
Q 017314 123 ---------SSTLYGCLGSVLDLAITHDNRSVIAASSS-NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAA 192 (373)
Q Consensus 123 ---------~~~~~~~~~~v~~~~~~~~~~~l~s~s~d-~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s 192 (373)
+....+| .+|+++.|.+||..+++++.+ ..|.|||+.++..+....---+.+.-+.|+| ++.+++.+.
T Consensus 180 ~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt 257 (445)
T KOG2139|consen 180 RMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAAT 257 (445)
T ss_pred ccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEec
Confidence 1122334 689999999999999999865 5899999999876655434456678899998 678999999
Q ss_pred CCCcEEEEEcc-CCeeeeEEeecCceeEEEEccCCCEEE-EEeCCCcEEEEECC----CC-----------eeeEEEec-
Q 017314 193 YDRTLKVWDLH-KGYCVNTIIFHSNCNALAFSMDGQTIF-SGHIDGNLRLWDIQ----TG-----------KLLSEVAA- 254 (373)
Q Consensus 193 ~D~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~-sg~~dg~i~iwd~~----~~-----------~~~~~~~~- 254 (373)
.|+..++|+.. +-.+.+.......|...+|+|+|..|+ +.+..- ++|.+. .+ .++..+..
T Consensus 258 ~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ 335 (445)
T KOG2139|consen 258 CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEV 335 (445)
T ss_pred ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhh
Confidence 99999999654 334444455556788899999998765 443332 333321 10 01111100
Q ss_pred ----c---cccceEEEEEcCCCCEEEEeeCCC--------eEEEEEccccceeeeeeecCCeeecCeeeeEECC---CCc
Q 017314 255 ----H---SLAAVTSISLSRSGNIILTSGRDN--------LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP---DES 316 (373)
Q Consensus 255 ----~---~~~~v~~~~~~~~~~~l~s~~~d~--------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~ 316 (373)
. ..++..+++|+|.|.+|++.-..+ .|.+||.+..-.+.-.. -+..-...-...+|+| ++.
T Consensus 336 ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~-cg~i~ge~P~~IsF~pl~n~g~ 414 (445)
T KOG2139|consen 336 TICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSY-CGMIGGEYPAYISFGPLKNEGR 414 (445)
T ss_pred hhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEe-cccccCCCCceEEeeecccCCc
Confidence 0 024678999999999999864433 34567766433221110 0000000001133443 566
Q ss_pred EEEEEeCCCcEEEEEc
Q 017314 317 YVAAGSADGSVYIWSI 332 (373)
Q Consensus 317 ~l~sgs~Dg~i~iwd~ 332 (373)
+|..|=.-|.|.-|++
T Consensus 415 lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 415 LLSIAWSTGRIQRYPL 430 (445)
T ss_pred EEEEEeccCceEeeee
Confidence 6666666777766655
No 238
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=7.7e-13 Score=126.06 Aligned_cols=267 Identities=17% Similarity=0.265 Sum_probs=179.5
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeecc------ccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 017314 89 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY------GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG 162 (373)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 162 (373)
+++.+..+-. .+|++| .--.|++||+..+..+..+. .|...- ...-.+.+++++..-+-+..-+....
T Consensus 8 ~~l~~~~~~~--~~llag-~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~---~~~l~~~~~v~~~~~~~v~~~~~~~~ 81 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLAG-SGPEILVYDLSSGCLIRHLIQSKILEVHRGEG---KVKLLSGKIVTCAKSDEVYVKEASNQ 81 (967)
T ss_pred ccccchhhcc--ceeeec-CCCceEEeeCCchhHhhhhhhhcccccccccc---cceeccceEEEEEeecceeecchhhh
Confidence 3444444433 455544 45579999998876544332 231000 00123345555555444443322211
Q ss_pred eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCce-----eEEEEccCCCEEEEEeCCCc
Q 017314 163 RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC-----NALAFSMDGQTIFSGHIDGN 237 (373)
Q Consensus 163 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~g~~l~sg~~dg~ 237 (373)
.... -.+.+....+.. ....++.+..+..+-+||...+...........+ .-+.++++.-++++|+.-+.
T Consensus 82 -~~~~---~s~wi~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~ 156 (967)
T KOG0974|consen 82 -IIER---FSDWIFGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGE 156 (967)
T ss_pred -hhhh---ccccccccchhh-hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccccc
Confidence 1111 223333333333 4567888888999999999877666555444332 23456778889999999999
Q ss_pred EEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcE
Q 017314 238 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY 317 (373)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 317 (373)
|.+|+..-......+.+|. +.|.++.++.||+++++.|.|+++++|++.+.+... .+.-.+......+++.|. +
T Consensus 157 iivW~~~~dn~p~~l~GHe-G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgHsaRvw~~~~~~n--~ 230 (967)
T KOG0974|consen 157 IIVWKPHEDNKPIRLKGHE-GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---CTGFGHSARVWACCFLPN--R 230 (967)
T ss_pred EEEEeccccCCcceecccC-CceEEEEEccCCcEEEEEecCcceeeeecccccccC---cccccccceeEEEEeccc--e
Confidence 9999997443333567776 899999999999999999999999999999877654 222222233345778877 9
Q ss_pred EEEEeCCCcEEEEEccCceEEEEeccCC-ccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 318 VAAGSADGSVYIWSISKADIVRTLKEHT-APVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 318 l~sgs~Dg~i~iwd~~~~~~~~~l~~h~-~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
++|++.|-+.++|+.. ++.+..+.+|. ..++.++..++...++|++.||.+++|+
T Consensus 231 i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred eEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 9999999999999665 44555788886 4799999999999999999999999995
No 239
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.3e-11 Score=115.30 Aligned_cols=235 Identities=15% Similarity=0.164 Sum_probs=144.9
Q ss_pred cEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCE
Q 017314 111 SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN---NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRH 187 (373)
Q Consensus 111 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~---~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 187 (373)
.|.++|...... ..+..+...+.+..|+|||+.|+..+.++ .|.+||+.+++... +...........|+|.....
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 566778655433 34445566788899999999988766432 58899998876432 22222233456788854434
Q ss_pred EEEEeCCCc--EEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEe-CCC--cEEEEECCCCeeeEEEecccccceEE
Q 017314 188 VVSAAYDRT--LKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGH-IDG--NLRLWDIQTGKLLSEVAAHSLAAVTS 262 (373)
Q Consensus 188 ~~s~s~D~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~-~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~ 262 (373)
+++.+.++. |.++|+.++...............+|+|||+.|+..+ .++ .|.++|+.+++.. .+.... .....
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g-~~~~~ 354 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEG-EQNLG 354 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecCC-CCCcC
Confidence 456677775 6777887775433222222346688999999887544 344 4666788777643 332221 22345
Q ss_pred EEEcCCCCEEEEeeCC-Ce--EEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeC-CCc--EEEEEccCce
Q 017314 263 ISLSRSGNIILTSGRD-NL--HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA-DGS--VYIWSISKAD 336 (373)
Q Consensus 263 ~~~~~~~~~l~s~~~d-~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~-Dg~--i~iwd~~~~~ 336 (373)
.+|+|+|++|+..+.+ +. +.++|+.+.+. ..+.... . .. ...++|||++|+..+. +|. +++++. ++.
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~~-~---d~-~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~ 427 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTSTR-L---DE-SPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGR 427 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccCCC-C---CC-CceECCCCCEEEEEEecCCceEEEEEEC-CCC
Confidence 6899999988776553 33 44567665543 2222111 1 11 1258999998876554 443 777776 566
Q ss_pred EEEEeccCCccEEEEEEcCC
Q 017314 337 IVRTLKEHTAPVLSCSWSGL 356 (373)
Q Consensus 337 ~~~~l~~h~~~V~~~~~s~~ 356 (373)
....+..+.+.+...+|||-
T Consensus 428 ~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 428 FKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ceEECcCCCCCcCCCccCCC
Confidence 66667767777888899983
No 240
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=5.9e-12 Score=117.50 Aligned_cols=201 Identities=17% Similarity=0.183 Sum_probs=135.2
Q ss_pred ceEEecCccCcEEEEEEcCCCCEEEEeeCC---CcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEE-EEeCCC--c
Q 017314 80 CKHKINAHEGGCASILFEYNSARLISGGQD---KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVI-AASSSN--N 153 (373)
Q Consensus 80 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~s~d~--~ 153 (373)
..+.+..|...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +....+...+.+|+|||+.++ +.+.++ .
T Consensus 195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 195 NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 345566777889999999999999988743 469999998876532 233344455789999999775 455555 5
Q ss_pred EEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEe-CCCc--EEEEEccCCeeeeEEeec-CceeEEEEccCCCEE
Q 017314 154 LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAA-YDRT--LKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTI 229 (373)
Q Consensus 154 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s-~D~~--i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~g~~l 229 (373)
|++||+.+++.. .+..+.......+|+| +++.++.++ .++. |.++|+.++.... +... ......+|+|||++|
T Consensus 274 Iy~~d~~~g~~~-~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~I 350 (433)
T PRK04922 274 IYVMDLGSRQLT-RLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKI 350 (433)
T ss_pred EEEEECCCCCeE-ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEE
Confidence 999999888754 4555555556678888 566666555 4555 5566766665332 2222 223468999999999
Q ss_pred EEEeCCC---cEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCC---CeEEEEEcc
Q 017314 230 FSGHIDG---NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD---NLHNLFDIR 287 (373)
Q Consensus 230 ~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~i~~~d~~ 287 (373)
+..+.++ .|.+||+.+++.. .+... .......|+|+|++++..+.+ ..+.++++.
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~~-~Lt~~--~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSVR-TLTPG--SLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred EEEECCCCceeEEEEECCCCCeE-ECCCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 8655433 5999999887654 33322 234567899999987766543 245566654
No 241
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.51 E-value=3.8e-10 Score=100.03 Aligned_cols=255 Identities=13% Similarity=0.093 Sum_probs=159.0
Q ss_pred CcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeC----------CCcEEEEEcCCCeeEEEeecCCC------
Q 017314 110 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS----------SNNLYVWDVNSGRVRHTLTGHTD------ 173 (373)
Q Consensus 110 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~----------d~~i~iwd~~~~~~~~~~~~h~~------ 173 (373)
++|.+.|..+++.+.++.....+-. + ++||++.++.+.. +..|.+||+.+.+.+..+..-.+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 8999999999998888775544433 4 9999998887766 68999999999998887764222
Q ss_pred -cEEEEEEeeCCCCEEEEEe--CCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCC-Cee-
Q 017314 174 -KVCAVDVSKISSRHVVSAA--YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT-GKL- 248 (373)
Q Consensus 174 -~v~~~~~~~~~~~~~~s~s--~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~-~~~- 248 (373)
....+.+++ ++++++... .+..|-+.|+.+++.+.++...........+.+... +-+.||......+.+ |+.
T Consensus 105 ~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 105 TYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred CccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccE--EEeecCceEEEEecCCCceE
Confidence 123566777 566666544 379999999999998887765432222222222211 112344433322211 111
Q ss_pred eEEEec-cc-ccc--eEEEEEcC-CCCEEEEeeCCCeEEEEEccc-----cceeeeeeec---CCeeecCeeeeEECCCC
Q 017314 249 LSEVAA-HS-LAA--VTSISLSR-SGNIILTSGRDNLHNLFDIRS-----LEVCGSLRAT---GNRVASNWSRSCISPDE 315 (373)
Q Consensus 249 ~~~~~~-~~-~~~--v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~-----~~~~~~~~~~---~~~~~~~~~~~~~s~~~ 315 (373)
...... +. ... ..- .|.+ +|+++..... +.+.+.|+.. .+....+... .......|...+++|++
T Consensus 182 ~~~~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg 259 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHP-AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR 259 (352)
T ss_pred EeeeeeecCCccccccCC-ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCC
Confidence 111000 00 000 000 3345 7887777666 9999999543 2222222211 11223345557899999
Q ss_pred cEEEEEe----------CCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCC-cEEEEe-CCCeEEEc
Q 017314 316 SYVAAGS----------ADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK-PLASAD-KNGVVCVW 372 (373)
Q Consensus 316 ~~l~sgs----------~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~-~l~s~s-~dg~i~iW 372 (373)
+.+.... ..+.|.++|..+++.+..+.- ...+..+++||||+ +|+... .++.|.+.
T Consensus 260 ~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsVi 327 (352)
T TIGR02658 260 DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIF 327 (352)
T ss_pred CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEE
Confidence 8877743 124799999999999888763 34789999999999 776555 56777765
No 242
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.3e-11 Score=113.67 Aligned_cols=235 Identities=17% Similarity=0.178 Sum_probs=148.0
Q ss_pred cEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCE
Q 017314 111 SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS---NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRH 187 (373)
Q Consensus 111 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 187 (373)
.|.++|...+. ...+..+...+....|+|||+.|+..+.+ ..|.+||+.+++... +......+....|+|.....
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 47777876544 34444566788899999999998877654 368999998886543 22233344467788844434
Q ss_pred EEEEeCCC--cEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeC-CC--cEEEEECCCCeeeEEEecccccceEE
Q 017314 188 VVSAAYDR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI-DG--NLRLWDIQTGKLLSEVAAHSLAAVTS 262 (373)
Q Consensus 188 ~~s~s~D~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~ 262 (373)
+++.+.++ .|.+||+.++................|+|||+.|+..+. +| .|.++|+.+++.. .+.... .....
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~-~~~~~ 335 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVG-NYNAR 335 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCC-CCccc
Confidence 44666665 577889987764332112223456789999998775543 33 5777788777643 232221 23345
Q ss_pred EEEcCCCCEEEEeeCC-C--eEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCC-C--cEEEEEccCce
Q 017314 263 ISLSRSGNIILTSGRD-N--LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-G--SVYIWSISKAD 336 (373)
Q Consensus 263 ~~~~~~~~~l~s~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~D-g--~i~iwd~~~~~ 336 (373)
..|+|+|+.|+..+.+ + .+.++|+.+.+. ..+... ... . ...++|||++++-.+.+ | .|+++++. +.
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~-~~~---~-~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~ 408 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDT-SLD---E-SPSVAPNGTMLIYATRQQGRGVLMLVSIN-GR 408 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCC-CCC---C-CceECCCCCEEEEEEecCCceEEEEEECC-CC
Confidence 7899999998876643 2 477888876543 222211 111 1 13689999998776643 3 46666764 44
Q ss_pred EEEEeccCCccEEEEEEcCC
Q 017314 337 IVRTLKEHTAPVLSCSWSGL 356 (373)
Q Consensus 337 ~~~~l~~h~~~V~~~~~s~~ 356 (373)
....+..+.+.+...+|||-
T Consensus 409 ~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 409 VRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ceEECcCCCCCcCCCccCCC
Confidence 44456556677788889873
No 243
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.50 E-value=3.8e-12 Score=114.61 Aligned_cols=184 Identities=21% Similarity=0.314 Sum_probs=143.6
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCeeeeEEeec----CceeEEEE--------------------ccCCCEEEEEeCCCcE
Q 017314 183 ISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH----SNCNALAF--------------------SMDGQTIFSGHIDGNL 238 (373)
Q Consensus 183 ~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~----~~~~~~~~--------------------~~~g~~l~sg~~dg~i 238 (373)
....+++....||.+|+||...++....+... ..+.+..| +.|...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 34668899999999999999988765555322 12333322 2233457788999999
Q ss_pred EEEECCCCeeeEEEe-cccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcE
Q 017314 239 RLWDIQTGKLLSEVA-AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY 317 (373)
Q Consensus 239 ~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 317 (373)
-+|++..++.-..+. ..+.+.|+++.++.+-..|.+++.|..+..|+.........+....... ...|++|||..
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~----~sl~is~D~~~ 158 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLV----SSLCISPDGKI 158 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCcc----ceEEEcCCCCE
Confidence 999999999888876 4456889999999999999999999999999998877766665443333 34789999999
Q ss_pred EEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCC-----CCcEEEE-eCCCeEEEc
Q 017314 318 VAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGL-----GKPLASA-DKNGVVCVW 372 (373)
Q Consensus 318 l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~-----g~~l~s~-s~dg~i~iW 372 (373)
+++|| +.|++||+++++.+.+|.||.++|.+++|--+ |.++.++ ..+..|.+|
T Consensus 159 l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 159 LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence 99887 56999999999999999999999999999877 7766554 445556665
No 244
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.50 E-value=1.4e-11 Score=111.10 Aligned_cols=187 Identities=14% Similarity=0.241 Sum_probs=146.0
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCceeeecccc---ccceEEEEE--------------------cCCCCEEEEEeCCCcE
Q 017314 98 YNSARLISGGQDKSIKLWDTNTGSLSSTLYGC---LGSVLDLAI--------------------THDNRSVIAASSSNNL 154 (373)
Q Consensus 98 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~---~~~v~~~~~--------------------~~~~~~l~s~s~d~~i 154 (373)
|...++|....||.+||||..+++....+... .+.-++..| +.|-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 44578999999999999999988775554321 122222222 2344567788889999
Q ss_pred EEEEcCCCeeEEEee--cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeec-CceeEEEEccCCCEEEE
Q 017314 155 YVWDVNSGRVRHTLT--GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFS 231 (373)
Q Consensus 155 ~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~s 231 (373)
.+|++..++....+. .|-+.|.++.++. ....|.|++.|+.+.+|+...+..++..... ..+.+++++|||..+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 999999999887776 6888999887765 5678999999999999999988877766544 34788999999999998
Q ss_pred EeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCC-----CCEEEE-eeCCCeEEEEEccc
Q 017314 232 GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS-----GNIILT-SGRDNLHNLFDIRS 288 (373)
Q Consensus 232 g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~s-~~~d~~i~~~d~~~ 288 (373)
|+ +.|++||+.+++.+..+++|. ++|.+++|..+ |.++++ ...+..+.+|-...
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~-s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHG-SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCC-cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 86 689999999999999999997 89999999876 666655 45566677776543
No 245
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.49 E-value=1.7e-13 Score=121.79 Aligned_cols=94 Identities=21% Similarity=0.363 Sum_probs=87.9
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEE
Q 017314 88 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT 167 (373)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 167 (373)
+++|...+|++||++||+.|.||.+||+|..+.+++..++..-+...|++|+|||+++++|+.|.-|.||.+...+++..
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR 369 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence 45788999999999999999999999999999888777776778899999999999999999999999999999999999
Q ss_pred eecCCCcEEEEEEe
Q 017314 168 LTGHTDKVCAVDVS 181 (373)
Q Consensus 168 ~~~h~~~v~~~~~~ 181 (373)
-++|+..|..|+|.
T Consensus 370 GqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 370 GQGHKSWVSVVAFD 383 (636)
T ss_pred ccccccceeeEeec
Confidence 99999999999997
No 246
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=9.4e-12 Score=111.67 Aligned_cols=239 Identities=15% Similarity=0.245 Sum_probs=160.2
Q ss_pred ccccceEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCeeEEEeecCCC--cEEEEEEeeCCCCEEEEEeCCCcEEEEEccC
Q 017314 128 GCLGSVLDLAITHDNRSVI-AASSSNNLYVWDVNSGRVRHTLTGHTD--KVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 204 (373)
Q Consensus 128 ~~~~~v~~~~~~~~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~ 204 (373)
.+...-+.+.++|||++++ +|...-.|++||+.+..+ .|.-|.+ .|.-.-++. +-.-++---.|++|-+... -
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsD-D~SK~v~L~~DR~IefHak-~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSD-DYSKSVFLQNDRTIEFHAK-Y 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEecc-chhhheEeecCceeeehhh-c
Confidence 4556678899999999865 556777999999976543 3444543 222221221 1112333445666655321 1
Q ss_pred CeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEE
Q 017314 205 GYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF 284 (373)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~ 284 (373)
|. -.....+.....++++.-..-|+.++....|.-+++..|+-+..+.... +.+++|..++...+|++|+.++.+.+|
T Consensus 125 G~-hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~-~~lN~v~in~~hgLla~Gt~~g~VEfw 202 (703)
T KOG2321|consen 125 GR-HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS-GELNVVSINEEHGLLACGTEDGVVEFW 202 (703)
T ss_pred Ce-eeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccccc-ccceeeeecCccceEEecccCceEEEe
Confidence 11 1112223334567776544556666666778889999999888776665 789999999999999999999999999
Q ss_pred EccccceeeeeeecCC-------eeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEe-ccCCccEEEEEEcCC
Q 017314 285 DIRSLEVCGSLRATGN-------RVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL-KEHTAPVLSCSWSGL 356 (373)
Q Consensus 285 d~~~~~~~~~~~~~~~-------~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l-~~h~~~V~~~~~s~~ 356 (373)
|.|....++.+..... ........+.|+.+|-.+++|+.+|.|.|||+...+++-.- .+..-+|..+.|.+.
T Consensus 203 DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 203 DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred cchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence 9998877777654332 11122455678888999999999999999999988775432 233458899999876
Q ss_pred C--CcEEEEeCCCeEEEcC
Q 017314 357 G--KPLASADKNGVVCVWT 373 (373)
Q Consensus 357 g--~~l~s~s~dg~i~iW~ 373 (373)
+ ..++|.+ ...++||+
T Consensus 283 ~~q~~v~S~D-k~~~kiWd 300 (703)
T KOG2321|consen 283 DQQNKVVSMD-KRILKIWD 300 (703)
T ss_pred CCCceEEecc-hHHhhhcc
Confidence 3 3455543 35678885
No 247
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.48 E-value=7.6e-10 Score=100.11 Aligned_cols=259 Identities=17% Similarity=0.258 Sum_probs=160.7
Q ss_pred cEEEEEEcCCCCEEEEeeC----CCcEEEEeCCCC--ce--eeeccccccceEEEEEcCCCCEEEEEeC-CCcEEEEEcC
Q 017314 90 GCASILFEYNSARLISGGQ----DKSIKLWDTNTG--SL--SSTLYGCLGSVLDLAITHDNRSVIAASS-SNNLYVWDVN 160 (373)
Q Consensus 90 ~v~~~~~~~~~~~l~s~s~----D~~v~iwd~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~l~s~s~-d~~i~iwd~~ 160 (373)
.-+-+++++++++|+++.. ++.|..|.+... .+ +............++++|++++|+++.. +++|.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 3445789999999999887 468988887653 32 2223222334556899999999998875 7899999998
Q ss_pred C-CeeEEE---ee--c--------CCCcEEEEEEeeCCCCEEEEE-eCCCcEEEEEccCCe--eee--EE--eecCceeE
Q 017314 161 S-GRVRHT---LT--G--------HTDKVCAVDVSKISSRHVVSA-AYDRTLKVWDLHKGY--CVN--TI--IFHSNCNA 219 (373)
Q Consensus 161 ~-~~~~~~---~~--~--------h~~~v~~~~~~~~~~~~~~s~-s~D~~i~vwd~~~~~--~~~--~~--~~~~~~~~ 219 (373)
. +.+... +. + -.....++.++| ++++++.. -....|.+|++.... ... .+ ........
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 6 443222 21 0 123356788887 55666554 345679999987654 222 22 22345788
Q ss_pred EEEccCCCEEEEE-eCCCcEEEEECC--CCee--eEEEecc-----cccceEEEEEcCCCCEEEEeeC-CCeEEEEEccc
Q 017314 220 LAFSMDGQTIFSG-HIDGNLRLWDIQ--TGKL--LSEVAAH-----SLAAVTSISLSRSGNIILTSGR-DNLHNLFDIRS 288 (373)
Q Consensus 220 ~~~~~~g~~l~sg-~~dg~i~iwd~~--~~~~--~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~-d~~i~~~d~~~ 288 (373)
+.|+|+|++++.. -.+++|.++++. ++.. +..+... .......|.++|||++|.++.+ .+.|.+|++..
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 9999999998765 467889999987 4432 2222211 1125778999999998877664 67899999832
Q ss_pred ----cceeeeeeecCCeeecCeeeeEECCCCcEEEEEe-CCCcEEEEEcc--CceEEEEec-cCCccEEEEEE
Q 017314 289 ----LEVCGSLRATGNRVASNWSRSCISPDESYVAAGS-ADGSVYIWSIS--KADIVRTLK-EHTAPVLSCSW 353 (373)
Q Consensus 289 ----~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs-~Dg~i~iwd~~--~~~~~~~l~-~h~~~V~~~~~ 353 (373)
.+.+..+...+.. -..+.++|+|++|+++. .++.|.+|++. +|.+...-. -.-....|+.|
T Consensus 277 ~~g~l~~~~~~~~~G~~----Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 277 ATGTLTLVQTVPTGGKF----PRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTEEEEEEEEESSSS----EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCceEEEEEEeCCCCC----ccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 2333333322221 12357899999998876 56789999874 565543322 12234456665
No 248
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.47 E-value=2.2e-12 Score=122.97 Aligned_cols=194 Identities=18% Similarity=0.247 Sum_probs=154.8
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeecccccc----ceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEE
Q 017314 91 CASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLG----SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH 166 (373)
Q Consensus 91 v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 166 (373)
+....+..+..+++.+..+..+-+||...+.....+....- ...-+.++++.-++++|+.-+.|.+|++...+.-.
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence 44456667788999999999999999988766554432211 12223456777789999999999999987433333
Q ss_pred EeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeee-EEe-ecCceeEEEEccCCCEEEEEeCCCcEEEEECC
Q 017314 167 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN-TII-FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ 244 (373)
Q Consensus 167 ~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~-~~~-~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~ 244 (373)
.+.||.+.+..+.++. ++.+++|.|.|+++|+|++.+.+... +.. +...+..++|.|+ .+++++.|.+.++|+..
T Consensus 170 ~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred eecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence 6899999999999976 78999999999999999999876554 222 3345888999988 89999999999999775
Q ss_pred CCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q 017314 245 TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS 288 (373)
Q Consensus 245 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~ 288 (373)
. ..+..+..|....+..++.++....++|++.|+.+++||+..
T Consensus 247 ~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 247 G-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred c-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 4 445588888888999999999999999999999999999753
No 249
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=5.3e-13 Score=119.20 Aligned_cols=277 Identities=13% Similarity=0.217 Sum_probs=186.1
Q ss_pred EEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC-------CceeeeccccccceEEEEEcCCCCEEEEEeCCCcE
Q 017314 82 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT-------GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNL 154 (373)
Q Consensus 82 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i 154 (373)
..+.||...|..++--.+.+.++++|.|++|++|.++. ..+..++..|..+|.++.|-.+.++++ +.|+.|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--eccCcc
Confidence 45789999999888777888999999999999999853 235667889999999999998888775 668899
Q ss_pred EEEEcCCCeeEEEee---cC--CCcEEEEEEeeC-CCCEEEE-EeCCCcEEEEEccCCeeeeEEeec------CceeEEE
Q 017314 155 YVWDVNSGRVRHTLT---GH--TDKVCAVDVSKI-SSRHVVS-AAYDRTLKVWDLHKGYCVNTIIFH------SNCNALA 221 (373)
Q Consensus 155 ~iwd~~~~~~~~~~~---~h--~~~v~~~~~~~~-~~~~~~s-~s~D~~i~vwd~~~~~~~~~~~~~------~~~~~~~ 221 (373)
.+||.--++++.... .| ...|.++ +. +...++. |+...+|+++|.+.+.....+..- .-+.+++
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 999987666544221 12 2233333 32 3334444 478999999999988766665432 2367899
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEE-EEccccceeeeeeecCC
Q 017314 222 FSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL-FDIRSLEVCGSLRATGN 300 (373)
Q Consensus 222 ~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~-~d~~~~~~~~~~~~~~~ 300 (373)
+.|.|+++++|-.+|.|.+.|.++|+.+.....-. .....++ .|..+.|+....|..+.+ |-...+...-+......
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpme-cdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppe 961 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPME-CDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPE 961 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCccc-chhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCc
Confidence 99999999999999999999999999876554321 1111222 245566777777777766 65444332222211111
Q ss_pred eeecCeeeeEECCCCcEEEEEeCCCcEEEEEccC----ceEEEEec--cCCccEEEEEEcCCCCcEEEEeCCCeEEE
Q 017314 301 RVASNWSRSCISPDESYVAAGSADGSVYIWSISK----ADIVRTLK--EHTAPVLSCSWSGLGKPLASADKNGVVCV 371 (373)
Q Consensus 301 ~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~----~~~~~~l~--~h~~~V~~~~~s~~g~~l~s~s~dg~i~i 371 (373)
+.. .+..-|.-|+++.....+.+|.-.. ...+..++ ...+..++++--|-+.-+..|...|.|.+
T Consensus 962 pah------flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 962 PAH------FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred chh------hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 111 0123455677777777788874221 11112222 23466788888888887888888998875
No 250
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.45 E-value=1.2e-11 Score=104.52 Aligned_cols=270 Identities=16% Similarity=0.314 Sum_probs=170.1
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCc-----eeeeccccc------------cceEEEEEcCCCC--EEEEEe
Q 017314 89 GGCASILFEYNSARLISGGQDKSIKLWDTNTGS-----LSSTLYGCL------------GSVLDLAITHDNR--SVIAAS 149 (373)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~s~s 149 (373)
.-+.++.|..+|.+|++|..+|.|.++.-+... ....+..|. ..|..+.|.++++ .++...
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 457889999999999999999999999754322 222333332 2467778877765 577889
Q ss_pred CCCcEEEEEcCCCeeEE---Ee--ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEe--ecCceeEEEE
Q 017314 150 SSNNLYVWDVNSGRVRH---TL--TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII--FHSNCNALAF 222 (373)
Q Consensus 150 ~d~~i~iwd~~~~~~~~---~~--~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~--~~~~~~~~~~ 222 (373)
.|++|++|-+....... .+ ++....+..+.. .+-+..|-.+-. .|.+.+. +...++++++
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~-------p~~~~~~~~vea------~prRv~aNaHtyhiNSIS~ 172 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL-------PVEGRHDLEVEA------SPRRVYANAHTYHINSISV 172 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeec-------eeeccccceeee------eeeeeccccceeEeeeeee
Confidence 99999999875432111 00 111111222211 111111211111 1222221 1234799999
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCee---eEEEeccc----ccceEEEEEcCC-CCEEEEeeCCCeEEEEEccccceeee
Q 017314 223 SMDGQTIFSGHIDGNLRLWDIQTGKL---LSEVAAHS----LAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLEVCGS 294 (373)
Q Consensus 223 ~~~g~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~----~~~v~~~~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~~~ 294 (373)
+.|+..++++ .|=.|.+|++.--.. +-.+..+. ...|++..|+|. .+.++-.+..|.|++-|+|....+..
T Consensus 173 NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~ 251 (433)
T KOG1354|consen 173 NSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA 251 (433)
T ss_pred cCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc
Confidence 9999988876 477899999853221 11222222 236888899985 46777788899999999995432211
Q ss_pred ----eeecC--------CeeecCeeeeEECCCCcEEEEEeCCCcEEEEEc-cCceEEEEeccCC------------ccE-
Q 017314 295 ----LRATG--------NRVASNWSRSCISPDESYVAAGSADGSVYIWSI-SKADIVRTLKEHT------------APV- 348 (373)
Q Consensus 295 ----~~~~~--------~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~-~~~~~~~~l~~h~------------~~V- 348 (373)
+.... ..+...++.+.|+++|+|+++-.- -+|++||+ -..+++.+++-|. ..|
T Consensus 252 hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~If 330 (433)
T KOG1354|consen 252 HSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIF 330 (433)
T ss_pred hhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchh
Confidence 11111 112234455779999999987554 47999999 4566677666552 122
Q ss_pred --EEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 349 --LSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 349 --~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
..|+||.++.++.|||-....++++
T Consensus 331 dKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 331 DKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred heeEEEEcCCcceEecccccceEEEec
Confidence 6799999999999999999888874
No 251
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.44 E-value=1.4e-10 Score=106.51 Aligned_cols=258 Identities=15% Similarity=0.145 Sum_probs=166.5
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEE--
Q 017314 99 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVC-- 176 (373)
Q Consensus 99 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~-- 176 (373)
++..++.++.|+.+..+|..+|+..-..... +.+.+.... .+..++.++.++.+..||.++|+.+..+........
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 4677888889999999999888875443221 222211111 345677788899999999999988776654332211
Q ss_pred ---EEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc-----e---eEEEEcc--CCCEEEEEeCCCcEEEEEC
Q 017314 177 ---AVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-----C---NALAFSM--DGQTIFSGHIDGNLRLWDI 243 (373)
Q Consensus 177 ---~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~-----~---~~~~~~~--~g~~l~sg~~dg~i~iwd~ 243 (373)
.... .+..++.+..++.+..+|+++|..+.+...... . ..+.-+| .+..++.++.+|.+..||.
T Consensus 182 ~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 182 GSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDL 258 (377)
T ss_pred CCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEEC
Confidence 0111 124677888899999999998876544322110 0 0010111 3567888889999999999
Q ss_pred CCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeC
Q 017314 244 QTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA 323 (373)
Q Consensus 244 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~ 323 (373)
.+|+.+...... ...... ..+..++.++.|+.+..+|..+++..-.......... ....+ .+.+|++++.
T Consensus 259 ~tG~~~W~~~~~---~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~---ssp~i--~g~~l~~~~~ 328 (377)
T TIGR03300 259 RSGRVLWKRDAS---SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQL---TAPAV--VGGYLVVGDF 328 (377)
T ss_pred CCCcEEEeeccC---CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCcc---ccCEE--ECCEEEEEeC
Confidence 999877655422 111222 2466788888999999999988765543321111111 11111 4678889999
Q ss_pred CCcEEEEEccCceEEEEeccCCccEE-EEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 324 DGSVYIWSISKADIVRTLKEHTAPVL-SCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 324 Dg~i~iwd~~~~~~~~~l~~h~~~V~-~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
||.|+++|..+++.+..++.+..++. +-.+. + ..|+.++.||.|..++
T Consensus 329 ~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 329 EGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAFR 377 (377)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEeC
Confidence 99999999999999988876654432 22332 3 4588899999998764
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.44 E-value=6.7e-11 Score=110.29 Aligned_cols=204 Identities=22% Similarity=0.251 Sum_probs=133.2
Q ss_pred cEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCC---CcEEEEEccCCeeeeEEeecCceeEEEEccCCCEE
Q 017314 153 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD---RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTI 229 (373)
Q Consensus 153 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l 229 (373)
.|.++|..... ...+..+...+....|+| +++.++.++.+ ..|.+||+.++.............+.+|+|||+.|
T Consensus 171 ~l~~~d~~g~~-~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYDGAN-PQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCCCCC-CEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 58888876444 344555677788888988 56677665543 47999999887654333333445678999999977
Q ss_pred E-EEeCCC--cEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeC-CC--eEEEEEccccceeeeeeecCCeee
Q 017314 230 F-SGHIDG--NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR-DN--LHNLFDIRSLEVCGSLRATGNRVA 303 (373)
Q Consensus 230 ~-sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~ 303 (373)
+ +.+.++ .|.+||+.+++. ..+..+. .......|+|+++.|+..+. ++ .+.++|+...+. ..+.......
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~- 324 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQL-TRLTNGP-GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYN- 324 (417)
T ss_pred EEEECCCCCccEEEEECCCCCE-EECCCCC-CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCc-
Confidence 6 444444 588899987754 3333332 33456789999998876554 33 466677665442 2222222111
Q ss_pred cCeeeeEECCCCcEEEEEeCCC---cEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCC
Q 017314 304 SNWSRSCISPDESYVAAGSADG---SVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNG 367 (373)
Q Consensus 304 ~~~~~~~~s~~~~~l~sgs~Dg---~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg 367 (373)
....++|+|++|+.++.++ .|.+||+.++.. ..+... ......+|+|||++|+.++.++
T Consensus 325 ---~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 325 ---ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred ---cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 2346899999999888776 789999887544 333322 2234568999999888877764
No 253
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.41 E-value=3.8e-10 Score=100.26 Aligned_cols=272 Identities=15% Similarity=0.222 Sum_probs=179.4
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCc---------------EEEEeCCCCceeeeccccccc--eE-EEEEcCCCCEEEEEeC
Q 017314 89 GGCASILFEYNSARLISGGQDKS---------------IKLWDTNTGSLSSTLYGCLGS--VL-DLAITHDNRSVIAASS 150 (373)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~s~D~~---------------v~iwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~s~s~ 150 (373)
..|.-+.|+|.+++|.|-+.... +.+||..+|..+..+.+...+ .. -+.|+.++.+++=- .
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence 46788899999999999876544 999999999998888776655 33 46788888766543 4
Q ss_pred CCcEEEEEcCCCeeE-EEeecC-CCcEEEEEEeeC-CCCEEE-----EEeCCCcEEEEEccCCeeeeEEee-cCceeEEE
Q 017314 151 SNNLYVWDVNSGRVR-HTLTGH-TDKVCAVDVSKI-SSRHVV-----SAAYDRTLKVWDLHKGYCVNTIIF-HSNCNALA 221 (373)
Q Consensus 151 d~~i~iwd~~~~~~~-~~~~~h-~~~v~~~~~~~~-~~~~~~-----s~s~D~~i~vwd~~~~~~~~~~~~-~~~~~~~~ 221 (373)
...++|+++ ++... .-+..- ...+....++|. +...|+ ....+.++++|.+..+..+.+... ...-..+.
T Consensus 151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk 229 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK 229 (561)
T ss_pred cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence 457889987 33211 111111 244566667774 222333 356788999999987765544322 22234577
Q ss_pred EccCCCEEEEE----e-------CCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEee--CCCeEEEEEccc
Q 017314 222 FSMDGQTIFSG----H-------IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG--RDNLHNLFDIRS 288 (373)
Q Consensus 222 ~~~~g~~l~sg----~-------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~d~~i~~~d~~~ 288 (373)
|++.|.+|..= . ...++.|+++....+.-.. ...++|...+|.|.++.+++.+ .+..+.++|++.
T Consensus 230 W~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 230 WQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred EecCCceEEEEEEEeeecccceeccceEEEEeecccccceec--cccccceeeeecccCCceeEEecccccceeeccccc
Confidence 88888876531 1 1346788888643322221 2237899999999988776654 678899999986
Q ss_pred cceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCC---CcEEEEEccCceEEE-EeccCCccEEEEEEcCCCCcEEEEe
Q 017314 289 LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD---GSVYIWSISKADIVR-TLKEHTAPVLSCSWSGLGKPLASAD 364 (373)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~D---g~i~iwd~~~~~~~~-~l~~h~~~V~~~~~s~~g~~l~s~s 364 (373)
. ....+..... +...|+|.++|++.++-| |.|-+||......+. .+.+... .-|.|||||+++-+.-
T Consensus 308 N-l~~~~Pe~~r------NT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~--s~~~wspd~qF~~~~~ 378 (561)
T COG5354 308 N-LRFYFPEQKR------NTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT--SYCDWSPDGQFYDTDT 378 (561)
T ss_pred c-eEEecCCccc------ccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc--eEeeccCCceEEEecC
Confidence 5 3222221111 234589999999998776 789999987755443 6665543 3588999999876542
Q ss_pred ------CCCeEEEcC
Q 017314 365 ------KNGVVCVWT 373 (373)
Q Consensus 365 ------~dg~i~iW~ 373 (373)
.|..|.||+
T Consensus 379 ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 379 TSEKLRVDNSIKLWD 393 (561)
T ss_pred CCcccccCcceEEEE
Confidence 356788885
No 254
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.38 E-value=3.1e-09 Score=94.32 Aligned_cols=235 Identities=13% Similarity=0.136 Sum_probs=151.4
Q ss_pred EcCCCCEEEEeeC----------CCcEEEEeCCCCceeeeccccc-------cceEEEEEcCCCCEEEEEe-C-CCcEEE
Q 017314 96 FEYNSARLISGGQ----------DKSIKLWDTNTGSLSSTLYGCL-------GSVLDLAITHDNRSVIAAS-S-SNNLYV 156 (373)
Q Consensus 96 ~~~~~~~l~s~s~----------D~~v~iwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~s~s-~-d~~i~i 156 (373)
++||++.|+.+.. +..|.+||..+.+....+.-.. .....++++|||++|+... . +..|-+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998877776 7899999999999887765321 1233688999999988766 3 689999
Q ss_pred EEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccC-Ce-eeeEEe-ecC-c----eeEEEEcc-CCC
Q 017314 157 WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-GY-CVNTII-FHS-N----CNALAFSM-DGQ 227 (373)
Q Consensus 157 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~-~~-~~~~~~-~~~-~----~~~~~~~~-~g~ 227 (373)
.|+.+++.+..+.--. ...- + +........-+.||+.....+.. |. ...... ++. . .+- .|.+ +|+
T Consensus 133 vD~~~~kvv~ei~vp~-~~~v--y-~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~ 207 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD-CYHI--F-PTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP-AYSNKSGR 207 (352)
T ss_pred EECCCCcEEEEEeCCC-CcEE--E-EecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC-ceEcCCCc
Confidence 9999999888776421 1111 1 11112222334555554433322 11 111111 111 0 011 3455 888
Q ss_pred EEEEEeCCCcEEEEECCCC-----eeeEEEecc------cccceEEEEEcCCCCEEEEee----------CCCeEEEEEc
Q 017314 228 TIFSGHIDGNLRLWDIQTG-----KLLSEVAAH------SLAAVTSISLSRSGNIILTSG----------RDNLHNLFDI 286 (373)
Q Consensus 228 ~l~sg~~dg~i~iwd~~~~-----~~~~~~~~~------~~~~v~~~~~~~~~~~l~s~~----------~d~~i~~~d~ 286 (373)
+++.... |+|.+.|+... +....+... ......-++++|+++.+.... ..+.+-++|.
T Consensus 208 ~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 208 LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 8887766 99999996432 222222211 112334499999999877632 2257999999
Q ss_pred cccceeeeeeecCCeeecCeeeeEECCCCc-EEEEEe-CCCcEEEEEccCceEEEEe
Q 017314 287 RSLEVCGSLRATGNRVASNWSRSCISPDES-YVAAGS-ADGSVYIWSISKADIVRTL 341 (373)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sgs-~Dg~i~iwd~~~~~~~~~l 341 (373)
.+.+.+..+...... ..++++||++ +|.+.+ .++.|.+.|..+++.++.+
T Consensus 287 ~t~kvi~~i~vG~~~-----~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 287 KTGKRLRKIELGHEI-----DSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCeEEEEEeCCCce-----eeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 999888877643222 2367999999 777665 6788999999999998887
No 255
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.38 E-value=1.9e-09 Score=110.00 Aligned_cols=242 Identities=14% Similarity=0.184 Sum_probs=161.4
Q ss_pred EEEEEcCC-CCEEEEeeCCCcEEEEeCCCCceeeeccc--------------cccceEEEEEcCCCCEEEEEe-CCCcEE
Q 017314 92 ASILFEYN-SARLISGGQDKSIKLWDTNTGSLSSTLYG--------------CLGSVLDLAITHDNRSVIAAS-SSNNLY 155 (373)
Q Consensus 92 ~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~s~s-~d~~i~ 155 (373)
..++++++ +..+++-+..+.|++||... .....+.+ .......++++++++.|+.+. ..+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788864 55777777889999999764 33332221 112357889999888766655 456899
Q ss_pred EEEcCCCeeEEEeecC-----------------CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEee-----
Q 017314 156 VWDVNSGRVRHTLTGH-----------------TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF----- 213 (373)
Q Consensus 156 iwd~~~~~~~~~~~~h-----------------~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~----- 213 (373)
++|+.++.. .++.+- -.....+++++.++..+++.+.++.|++||...+... .+..
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 999887653 333210 0123567888756677788888999999998776532 1111
Q ss_pred -----------cCceeEEEEccCCCEEE-EEeCCCcEEEEECCCCeeeEEEec-------------c-------cccceE
Q 017314 214 -----------HSNCNALAFSMDGQTIF-SGHIDGNLRLWDIQTGKLLSEVAA-------------H-------SLAAVT 261 (373)
Q Consensus 214 -----------~~~~~~~~~~~~g~~l~-sg~~dg~i~iwd~~~~~~~~~~~~-------------~-------~~~~v~ 261 (373)
-.....++++|+|..|+ +-+.++.|++||+.++.......+ . ......
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 01245799999998555 556678999999987653211100 0 011346
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCe----------eecCeeeeEECCCCcEEEEEeCCCcEEEEE
Q 017314 262 SISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR----------VASNWSRSCISPDESYVAAGSADGSVYIWS 331 (373)
Q Consensus 262 ~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~----------~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd 331 (373)
.++++++|+++++.+.++.|++||..+..... +...+.. .......++++++|+.+++-+.++.|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 88999999999999999999999987655432 2221110 001123467899999999999999999999
Q ss_pred ccCceE
Q 017314 332 ISKADI 337 (373)
Q Consensus 332 ~~~~~~ 337 (373)
+.+++.
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 988764
No 256
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=7.1e-12 Score=125.36 Aligned_cols=193 Identities=15% Similarity=0.257 Sum_probs=151.7
Q ss_pred ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccc-cccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeE
Q 017314 87 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG-CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR 165 (373)
Q Consensus 87 h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 165 (373)
|-..|.++.=+|...+.+||+.||+|++|....+..+..++. ....|+.+.|+.+|+.+..+..||.+.+|... .++.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence 445667777778888999999999999999988777665542 23788899999999999999999999999987 5666
Q ss_pred EEeecCCCcEEEEEEeeCCCCEEEEEe---CCCcEEEEEccCC---eeeeEEeec-CceeEEEEccCCCEEEEEeCCCcE
Q 017314 166 HTLTGHTDKVCAVDVSKISSRHVVSAA---YDRTLKVWDLHKG---YCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNL 238 (373)
Q Consensus 166 ~~~~~h~~~v~~~~~~~~~~~~~~s~s---~D~~i~vwd~~~~---~~~~~~~~~-~~~~~~~~~~~g~~l~sg~~dg~i 238 (373)
...+.|......+.|-. ..+++++ .++.+.+||.... .++. ..| ..++++++.|..+.|++|+.+|.|
T Consensus 2286 ~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred eccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcE
Confidence 67788888877777653 3455543 5789999997432 2333 333 458999999999999999999999
Q ss_pred EEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeee
Q 017314 239 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR 296 (373)
Q Consensus 239 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~ 296 (373)
++||++..++++.+.. ++ ...++++++..+.++||++.....+.++.
T Consensus 2361 ~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999998877665543 33 45689999999999999998776655554
No 257
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.35 E-value=1.5e-09 Score=99.77 Aligned_cols=258 Identities=16% Similarity=0.122 Sum_probs=162.9
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEE
Q 017314 99 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAV 178 (373)
Q Consensus 99 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 178 (373)
.+..++.++.++.|.-+|..+|+.+-...-........+ .++..++.++.++.+..+|..+|+.+...... ..+.+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~ 140 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSP 140 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecC
Confidence 467899999999999999999987644332221111222 25678888999999999999999887665432 222211
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCcee------EEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEE
Q 017314 179 DVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCN------ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEV 252 (373)
Q Consensus 179 ~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~------~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~ 252 (373)
... .+..++.++.++.+..||..+|+.+.++....... +..+ .+..++.+..+|.+..+|.++|+.+...
T Consensus 141 p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 141 PLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred CEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 111 23467778889999999999998766554332211 1111 2346788888999999999999876544
Q ss_pred eccccc------ceEEEEEcC--CCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCC
Q 017314 253 AAHSLA------AVTSISLSR--SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD 324 (373)
Q Consensus 253 ~~~~~~------~v~~~~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~D 324 (373)
...... ....+.-+| .+..++.++.++.+..+|..+++..-..... .+. ....++..+..++.|
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~------~~~--~p~~~~~~vyv~~~~ 288 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS------SYQ--GPAVDDNRLYVTDAD 288 (377)
T ss_pred ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC------Ccc--CceEeCCEEEEECCC
Confidence 321100 000010111 2457777888999999999887654433211 011 112356778888899
Q ss_pred CcEEEEEccCceEEEEeccCCc-cEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 325 GSVYIWSISKADIVRTLKEHTA-PVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 325 g~i~iwd~~~~~~~~~l~~h~~-~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
|.|+.+|..+++.+-....... ...+... .+..|+.++.+|.|++++
T Consensus 289 G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 289 GVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred CeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 9999999999987654422111 1111122 356888899999988764
No 258
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=5.1e-12 Score=113.01 Aligned_cols=213 Identities=16% Similarity=0.281 Sum_probs=155.0
Q ss_pred eeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCC-------CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 017314 124 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS-------GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRT 196 (373)
Q Consensus 124 ~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~ 196 (373)
..+.||...|..++--.+.+.+++++.|++|++|.++. ..+..+++.|+.+|..+.|-. +.++++ |.|+-
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~--ScD~g 805 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIA--SCDGG 805 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceee--eccCc
Confidence 45668888888777666778899999999999999853 357889999999999998865 444555 45899
Q ss_pred EEEEEccCCeeeeEEee---cCceeEEEEcc--CCCEEEEE-eCCCcEEEEECCCCeeeEEEeccc----ccceEEEEEc
Q 017314 197 LKVWDLHKGYCVNTIIF---HSNCNALAFSM--DGQTIFSG-HIDGNLRLWDIQTGKLLSEVAAHS----LAAVTSISLS 266 (373)
Q Consensus 197 i~vwd~~~~~~~~~~~~---~~~~~~~~~~~--~g~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~~ 266 (373)
|.+||.-.++.+.++.. +..+..+..-| +...+++| +...+|+++|.+..+...++.... ..-+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 99999877776654432 22222222222 44445444 778999999999987776664431 2468899999
Q ss_pred CCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEE-EEccCceEEEEeccC
Q 017314 267 RSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYI-WSISKADIVRTLKEH 344 (373)
Q Consensus 267 ~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~i-wd~~~~~~~~~l~~h 344 (373)
+.|+.++++-.+|.+.+.|.|++.++..++...-... .. ..|..+.|+....|.++.+ |...++......+..
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdll----ql-aapsdq~L~~saldHslaVnWhaldgimh~q~kpp 959 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLL----QL-AAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPP 959 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhh----hh-cCchhHHHHhhcccceeEeeehhcCCeeeeccCCC
Confidence 9999999999999999999999887766543221111 11 2577888988888999999 988777666555543
No 259
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.33 E-value=1.9e-11 Score=112.76 Aligned_cols=280 Identities=16% Similarity=0.287 Sum_probs=182.6
Q ss_pred ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC-ceeeeccccc--cceEEEEEcCCCC--EEEEEeCCCcEEEEEcCC
Q 017314 87 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTG-SLSSTLYGCL--GSVLDLAITHDNR--SVIAASSSNNLYVWDVNS 161 (373)
Q Consensus 87 h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~--~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~ 161 (373)
-.+++.++.++|.|.-++.|+.-|... -|+... .....+. |. -.|.++.|++... +-+.......-.+|++..
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~gl~i-~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQGLYI-IDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcCeEE-EeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 357888999999999999999876544 455432 3333332 32 2356677776653 344444445566888753
Q ss_pred ---CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCe-eeeE-EeecCceeEEEEccCCCEEEEEeCCC
Q 017314 162 ---GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-CVNT-IIFHSNCNALAFSMDGQTIFSGHIDG 236 (373)
Q Consensus 162 ---~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~-~~~~-~~~~~~~~~~~~~~~g~~l~sg~~dg 236 (373)
......+.+|+..|+.+.|++.....+++|+.|-.+..||+++.. ++.. ...+.....+.|+.....+.+.+...
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~ 180 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN 180 (1081)
T ss_pred CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCC
Confidence 345667889999999999999888899999999999999998753 2222 23445567888987655666667778
Q ss_pred cEEEEECCCCe-eeEEEecccccceEEEEEcCC-CCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCC
Q 017314 237 NLRLWDIQTGK-LLSEVAAHSLAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD 314 (373)
Q Consensus 237 ~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 314 (373)
.|++||++.|. ++..+.+| ...|+++.|..- ...+.+++.|+++++||.............. .......++-|-
T Consensus 181 ~i~vwd~r~gs~pl~s~K~~-vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt---~~piw~~r~~Pf 256 (1081)
T KOG0309|consen 181 DIFVWDLRKGSTPLCSLKGH-VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT---NFPIWRGRYLPF 256 (1081)
T ss_pred ceEEEeccCCCcceEEeccc-ceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc---cCcceecccccc
Confidence 89999998764 45556664 477888888653 3468899999999999976432211111110 011111223332
Q ss_pred C--cEEEE--EeC-------CCcEEEEEccC-ceEEEEeccCCccEEEEEEcCCC----------CcEEEEeCCCeEEEc
Q 017314 315 E--SYVAA--GSA-------DGSVYIWSISK-ADIVRTLKEHTAPVLSCSWSGLG----------KPLASADKNGVVCVW 372 (373)
Q Consensus 315 ~--~~l~s--gs~-------Dg~i~iwd~~~-~~~~~~l~~h~~~V~~~~~s~~g----------~~l~s~s~dg~i~iW 372 (373)
| .++.- |+. +..-..|++.+ .++++.|.||...|...-|--.+ -.|+|=|.|.++|+|
T Consensus 257 g~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 257 GEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred CceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 2 22211 111 12233455544 46799999999998776664322 269999999999999
No 260
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1.4e-09 Score=101.77 Aligned_cols=200 Identities=17% Similarity=0.163 Sum_probs=128.2
Q ss_pred eEEecCccCcEEEEEEcCCCCEEEEeeCC---CcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEE-EEeCCC--cE
Q 017314 81 KHKINAHEGGCASILFEYNSARLISGGQD---KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVI-AASSSN--NL 154 (373)
Q Consensus 81 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~s~d~--~i 154 (373)
.+.+..+...+....|+|||+.|+..+.+ ..|.+||+.++.... +....+.+...+|+|||+.|+ +.+.++ .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 34455677788999999999999877644 368999998876533 222234455689999999876 444454 58
Q ss_pred EEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEe-CCC--cEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEE
Q 017314 155 YVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAA-YDR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFS 231 (373)
Q Consensus 155 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s-~D~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s 231 (373)
++||+.+++.. .+..+........|+|. ++.++..+ .++ .|.++|+.++...+............|+|||+.|+.
T Consensus 270 y~~d~~~~~~~-~lt~~~~~~~~~~~spD-g~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 270 YVMDLASRQLS-RVTNHPAIDTEPFWGKD-GRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEECCCCCeE-EcccCCCCcCCeEECCC-CCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence 88899887654 34555555556678874 55554444 344 466778777654322211122345689999999886
Q ss_pred EeCC-C--cEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCC-C--eEEEEEc
Q 017314 232 GHID-G--NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD-N--LHNLFDI 286 (373)
Q Consensus 232 g~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-~--~i~~~d~ 286 (373)
.+.+ + .|.+||+.+++. ..+... .......|+|+|+.++-.+.+ + .+.++++
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~-~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSV-RILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred EEccCCceEEEEEECCCCCE-EEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 6543 3 488899988764 333321 122345899999988766543 3 3444454
No 261
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.31 E-value=2.4e-11 Score=121.76 Aligned_cols=219 Identities=16% Similarity=0.296 Sum_probs=154.8
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCe
Q 017314 128 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTG-HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY 206 (373)
Q Consensus 128 ~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~ 206 (373)
.+...|..+.-+|-..+.++|+.||.|++|....++.+..+.. -...|+.+.|+. .++-+..+..||.+.+|.+.. +
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~p-k 2283 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASP-K 2283 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccCC-c
Confidence 3455667777778888899999999999999888877666542 226777787876 566777888999999999873 2
Q ss_pred eeeEEeecCc-eeEEEEccCCCEEEEE---eCCCcEEEEECCCC---eeeEEEecccccceEEEEEcCCCCEEEEeeCCC
Q 017314 207 CVNTIIFHSN-CNALAFSMDGQTIFSG---HIDGNLRLWDIQTG---KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN 279 (373)
Q Consensus 207 ~~~~~~~~~~-~~~~~~~~~g~~l~sg---~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 279 (373)
+.-....|.. ...+.|-. ..++++ +.++.+.+||..-. .++. ..|. +..+++++.|..++|++||++|
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~-~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHD-GGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecC-CCceEEEEcCcceEEEecCCcC
Confidence 2223333332 34444443 455654 35788999997432 2333 5554 7899999999999999999999
Q ss_pred eEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEecc-C--Ccc--E--EEEE
Q 017314 280 LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE-H--TAP--V--LSCS 352 (373)
Q Consensus 280 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~-h--~~~--V--~~~~ 352 (373)
.+++||++..+..+.++. .. ...+|++|+..|.|+||++.....++++.. | .+- + ..+-
T Consensus 2359 ~v~l~D~rqrql~h~~~~-------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~ 2424 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA-------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQIN 2424 (2439)
T ss_pred cEEEeehHHHHHHHHhhh-------------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceee
Confidence 999999998766655543 23 467999999999999999998877777653 2 111 1 1222
Q ss_pred EcCCCCcEEEEeCCCe
Q 017314 353 WSGLGKPLASADKNGV 368 (373)
Q Consensus 353 ~s~~g~~l~s~s~dg~ 368 (373)
.. .++.|.+++.||+
T Consensus 2425 v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2425 VG-QCNRIFSCGADGT 2439 (2439)
T ss_pred ec-cCceEEEecCCCC
Confidence 22 2456778888874
No 262
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.31 E-value=3.9e-09 Score=107.67 Aligned_cols=236 Identities=13% Similarity=0.088 Sum_probs=152.4
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEEcCCCeeEEEeec-C-------------CCcEEEEEEeeCCCCE-EEEEeCCCcE
Q 017314 134 LDLAITHD-NRSVIAASSSNNLYVWDVNSGRVRHTLTG-H-------------TDKVCAVDVSKISSRH-VVSAAYDRTL 197 (373)
Q Consensus 134 ~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-h-------------~~~v~~~~~~~~~~~~-~~s~s~D~~i 197 (373)
..++++++ +..+++-+.++.|++||... +.+..+.+ . -.....+++.+. ++. +++-...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~-gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK-KNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCC-CCEEEEEeCCCceE
Confidence 35788875 45666667788999999864 43433332 1 112467777763 444 4445556789
Q ss_pred EEEEccCCeeeeEEee------------------cCceeEEEEcc-CCCEEEEEeCCCcEEEEECCCCeeeEEEecc---
Q 017314 198 KVWDLHKGYCVNTIIF------------------HSNCNALAFSM-DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH--- 255 (373)
Q Consensus 198 ~vwd~~~~~~~~~~~~------------------~~~~~~~~~~~-~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--- 255 (373)
+++|..++.. .++.. -.....++++| ++..+++.+.++.|++||..++... .+.+.
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 9999877642 22211 01235789999 5666667778899999999876542 22111
Q ss_pred -----------cccceEEEEEcCCCC-EEEEeeCCCeEEEEEccccceeeeeee----------cC--Ce-----eecCe
Q 017314 256 -----------SLAAVTSISLSRSGN-IILTSGRDNLHNLFDIRSLEVCGSLRA----------TG--NR-----VASNW 306 (373)
Q Consensus 256 -----------~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~~~----------~~--~~-----~~~~~ 306 (373)
.......++++|+++ ++++.+.++.|++||+.+......... .+ .. .....
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 012356799999998 555666778999999876542110000 00 00 00111
Q ss_pred eeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEec-------------cCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 307 SRSCISPDESYVAAGSADGSVYIWSISKADIVRTLK-------------EHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 307 ~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~-------------~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
..++++++|..+++-+.+++|++||..++....... +.-.....++++++|+.+++-+.++.|++|+
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 246788999999999999999999998876553321 1112457899999999889888999999985
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1.8e-09 Score=100.98 Aligned_cols=197 Identities=14% Similarity=0.152 Sum_probs=121.6
Q ss_pred EecCccCcEEEEEEcCCCCEEEEeeCC-C--cEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEE-EeCCCc--EEE
Q 017314 83 KINAHEGGCASILFEYNSARLISGGQD-K--SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIA-ASSSNN--LYV 156 (373)
Q Consensus 83 ~~~~h~~~v~~~~~~~~~~~l~s~s~D-~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~s~d~~--i~i 156 (373)
.+..+...+.+..|+|||++|+..+.+ + .|.+||+.+++... +....+.....+|+|||+.|+. .+.++. |++
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 344556678889999999999877643 2 58888998876432 2212233346789999998765 455664 788
Q ss_pred EEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEE-EEeCCCc--EEEEEccCCeeeeEEeec-CceeEEEEccCCCEEEEE
Q 017314 157 WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVV-SAAYDRT--LKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSG 232 (373)
Q Consensus 157 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~-s~s~D~~--i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~sg 232 (373)
+|+.+++.. .+..+........|+|. ++.++ +...++. |.++|+.++.... +... ......+|+|||++|+..
T Consensus 291 ~dl~tg~~~-~lt~~~~~~~~p~wSpD-G~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 291 VDIATKALT-RITRHRAIDTEPSWHPD-GKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMV 367 (448)
T ss_pred EECCCCCeE-ECccCCCCccceEECCC-CCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEE
Confidence 898887654 34445555566778884 55554 4444444 5556776665432 2222 123346899999998765
Q ss_pred eC-CC--cEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCC-Ce--EEEEEc
Q 017314 233 HI-DG--NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD-NL--HNLFDI 286 (373)
Q Consensus 233 ~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-~~--i~~~d~ 286 (373)
+. ++ .|.++|+.+++.. .+.... ......|+|+|+.|+..+.+ +. +.+++.
T Consensus 368 ~~~~g~~~I~~~dl~~g~~~-~lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 368 NRTNGKFNIARQDLETGAMQ-VLTSTR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred EecCCceEEEEEECCCCCeE-EccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 44 44 4556788777542 333221 12234799999987665443 32 445554
No 264
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.29 E-value=6.4e-10 Score=92.32 Aligned_cols=178 Identities=17% Similarity=0.185 Sum_probs=124.5
Q ss_pred cEEEEEEc---CCCC-EEEEeeCCCcEEEEeCCCCceeeeccccc------cceEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 017314 90 GCASILFE---YNSA-RLISGGQDKSIKLWDTNTGSLSSTLYGCL------GSVLDLAITHDNRSVIAASSSNNLYVWDV 159 (373)
Q Consensus 90 ~v~~~~~~---~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 159 (373)
.+..+.|. .+|. .|+-+-.+|.|.++..........+.+-. ....++.|++-+..++++-.+|.+.+-+.
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~ 150 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYE 150 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEec
Confidence 34444443 2344 56666778888888765433333333221 12456788999999999999999986665
Q ss_pred CCCeeEE--EeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcc-CCeeee--EEeecCceeEEEEcc-CCCEEEEEe
Q 017314 160 NSGRVRH--TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH-KGYCVN--TIIFHSNCNALAFSM-DGQTIFSGH 233 (373)
Q Consensus 160 ~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~-~~~~~~--~~~~~~~~~~~~~~~-~g~~l~sg~ 233 (373)
....... +.+.|.-+.+...|+....+.+.+||.|+.+.-||++ .+..+. ...++..|.++.-+| .+.+|++|+
T Consensus 151 t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGs 230 (339)
T KOG0280|consen 151 TEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGS 230 (339)
T ss_pred ceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEec
Confidence 5554444 7889999999999988888999999999999999998 332222 223445677776665 688999999
Q ss_pred CCCcEEEEECC-CCeeeEEEecccccceEEEEEcCCC
Q 017314 234 IDGNLRLWDIQ-TGKLLSEVAAHSLAAVTSISLSRSG 269 (373)
Q Consensus 234 ~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~ 269 (373)
.|-.|++||.| .++++..-... +.|--+..+|.-
T Consensus 231 YDe~i~~~DtRnm~kPl~~~~v~--GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 231 YDECIRVLDTRNMGKPLFKAKVG--GGVWRIKHHPEI 265 (339)
T ss_pred cccceeeeehhcccCccccCccc--cceEEEEecchh
Confidence 99999999998 45555443322 578888888743
No 265
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=2e-09 Score=96.64 Aligned_cols=272 Identities=15% Similarity=0.179 Sum_probs=159.6
Q ss_pred cEEEEEEcCCCCEEEEeeCC-----------CcEEEEeCCCCceeeecccccc--ceE-EEEEcCCCCEEEEEeCCCcEE
Q 017314 90 GCASILFEYNSARLISGGQD-----------KSIKLWDTNTGSLSSTLYGCLG--SVL-DLAITHDNRSVIAASSSNNLY 155 (373)
Q Consensus 90 ~v~~~~~~~~~~~l~s~s~D-----------~~v~iwd~~~~~~~~~~~~~~~--~v~-~~~~~~~~~~l~s~s~d~~i~ 155 (373)
.|.-+.|||..++|+|-|.- ..++|||+.+|.....+....+ .+. -..||.|+++++--.. .+|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence 56778999999999998841 5799999999988877654222 222 2578999998876554 6799
Q ss_pred EEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeC-----CCcEEEEEccCCeeeeEEeecCce-eEEEEccCCCEE
Q 017314 156 VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY-----DRTLKVWDLHKGYCVNTIIFHSNC-NALAFSMDGQTI 229 (373)
Q Consensus 156 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~-----D~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~g~~l 229 (373)
||+..+-.++..-.-.-..|....|+|. ++.|+--.. -..+-+-.+.+++.+++...+.-. ..+-|..+|.+|
T Consensus 330 IyEtpsf~lld~Kslki~gIr~FswsP~-~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 330 IYETPSFMLLDKKSLKISGIRDFSWSPT-SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEecCceeeecccccCCccccCcccCCC-cceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence 9987664332211122345667778874 444432111 122334444444444433222111 125566677776
Q ss_pred EEE----------eCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeC---CCeEEEEEccccceeeeee
Q 017314 230 FSG----------HIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR---DNLHNLFDIRSLEVCGSLR 296 (373)
Q Consensus 230 ~sg----------~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i~~~d~~~~~~~~~~~ 296 (373)
..- +.=..+.|+.++.....-....- ...|...+|.|.|+.+++-+. ..++.+|-+.+....-.+.
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel-ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL-KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeeec-chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 531 12224556666544332222111 257888999999987665332 3567788766311100110
Q ss_pred ecCCeeecCeeeeEECCCCcEEEEE---eCCCcEEEEEccCceEEEE-eccCCccEEEEEEcCCCCcEEEEeCCC
Q 017314 297 ATGNRVASNWSRSCISPDESYVAAG---SADGSVYIWSISKADIVRT-LKEHTAPVLSCSWSGLGKPLASADKNG 367 (373)
Q Consensus 297 ~~~~~~~~~~~~~~~s~~~~~l~sg---s~Dg~i~iwd~~~~~~~~~-l~~h~~~V~~~~~s~~g~~l~s~s~dg 367 (373)
..... ...+.+.++|.|++++.+ |..|.+.++|..-..+..+ ...|. ..+.+-|.|.|+|++|++.-.
T Consensus 488 k~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 488 KELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred hhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehh
Confidence 00011 112346689999998775 4578999999875333222 22344 357899999999999998654
No 266
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=2.9e-09 Score=98.79 Aligned_cols=206 Identities=15% Similarity=0.088 Sum_probs=120.4
Q ss_pred cEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCC--EEEEEeCCC--cEEEEEccCCeeeeEEeecCceeEEEEccCCCE
Q 017314 153 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR--HVVSAAYDR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQT 228 (373)
Q Consensus 153 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~~~s~s~D~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~ 228 (373)
.|.+.|...+... .+.........-.|+|.... ++++...++ .|.+.++..+...+...........+|+|||+.
T Consensus 166 ~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~ 244 (428)
T PRK01029 166 ELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL 244 (428)
T ss_pred eEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence 5777777655543 34434445566678885433 222443443 466778877754433333334456789999998
Q ss_pred EEEEeC-----CCcEEEEECCCC--eeeEEEecccccceEEEEEcCCCCEEEEee-CCCeEEEEEc--cc-cceeeeeee
Q 017314 229 IFSGHI-----DGNLRLWDIQTG--KLLSEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDI--RS-LEVCGSLRA 297 (373)
Q Consensus 229 l~sg~~-----dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~~~d~--~~-~~~~~~~~~ 297 (373)
|+..+. |..+.+|++..+ .....+...........+|+|||+.|+..+ .++...+|.+ .. ......+..
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~ 324 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK 324 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc
Confidence 875442 333455777653 122333322223446789999999777654 4665555543 21 111222222
Q ss_pred cCCeeecCeeeeEECCCCcEEEEEeCC---CcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEe
Q 017314 298 TGNRVASNWSRSCISPDESYVAAGSAD---GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASAD 364 (373)
Q Consensus 298 ~~~~~~~~~~~~~~s~~~~~l~sgs~D---g~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s 364 (373)
.... .....++|||++|+..+.+ ..|++||+.+++... +......+....|+|||++|+..+
T Consensus 325 ~~~~----~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 325 KYRN----SSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSA 389 (428)
T ss_pred CCCC----ccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEE
Confidence 2111 1234689999998876543 369999998887643 333344567899999999887543
No 267
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=1.6e-07 Score=80.74 Aligned_cols=264 Identities=13% Similarity=0.215 Sum_probs=166.4
Q ss_pred CccCcEEEEEEcCCCCEEEEeeCC---CcEEEEeCCC--Ccee--eeccccccceEEEEEcCCCCEEEEEeCC-CcEEEE
Q 017314 86 AHEGGCASILFEYNSARLISGGQD---KSIKLWDTNT--GSLS--STLYGCLGSVLDLAITHDNRSVIAASSS-NNLYVW 157 (373)
Q Consensus 86 ~h~~~v~~~~~~~~~~~l~s~s~D---~~v~iwd~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~s~d-~~i~iw 157 (373)
.+.+..+=++|+++.+.|.++-.+ |.|.-|.+.. |.+. ........+..-+++++++++++++... +.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 455667778999999999988765 6677766653 4432 1111112333778999999999998865 689999
Q ss_pred EcCC-CeeEE--EeecCCCc----------EEEEEEeeCCCCEEEEEeC-CCcEEEEEccCCeeeeE----EeecCceeE
Q 017314 158 DVNS-GRVRH--TLTGHTDK----------VCAVDVSKISSRHVVSAAY-DRTLKVWDLHKGYCVNT----IIFHSNCNA 219 (373)
Q Consensus 158 d~~~-~~~~~--~~~~h~~~----------v~~~~~~~~~~~~~~s~s~-D~~i~vwd~~~~~~~~~----~~~~~~~~~ 219 (373)
-++. |.+.. ....|... +....+.| ++++++++.- --.|.+|++..|..... +.......-
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH 195 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH 195 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcce
Confidence 8855 43221 22234444 66677777 5677776642 23588999987754322 222345678
Q ss_pred EEEccCCCEEEEEe-CCCcEEEEECCCC-eeeEEEecc--------cccceEEEEEcCCCCEEEEeeCC-CeEEEEEccc
Q 017314 220 LAFSMDGQTIFSGH-IDGNLRLWDIQTG-KLLSEVAAH--------SLAAVTSISLSRSGNIILTSGRD-NLHNLFDIRS 288 (373)
Q Consensus 220 ~~~~~~g~~l~sg~-~dg~i~iwd~~~~-~~~~~~~~~--------~~~~v~~~~~~~~~~~l~s~~~d-~~i~~~d~~~ 288 (373)
+.|+|++++++..+ -+++|-+|..... ..+..+..+ .......|.+++||++|.++.+. +.|-+|.+..
T Consensus 196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 99999999988654 5899999998763 222222221 12457789999999999998763 4677777654
Q ss_pred cc-ee---eeeeecCCeeecCeeeeEECCCCcEEEEEeCCC-cEEEEEccC--ceEEEEec-cCCccEEEEEEc
Q 017314 289 LE-VC---GSLRATGNRVASNWSRSCISPDESYVAAGSADG-SVYIWSISK--ADIVRTLK-EHTAPVLSCSWS 354 (373)
Q Consensus 289 ~~-~~---~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg-~i~iwd~~~--~~~~~~l~-~h~~~V~~~~~s 354 (373)
.. .. .....++. ... ...|+|+|++|+++.+|+ .|.+|.+.. |++-.... .....-.|+.|.
T Consensus 276 ~~g~L~~~~~~~teg~-~PR---~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 276 DGGKLELVGITPTEGQ-FPR---DFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCCEEEEEEEeccCCc-CCc---cceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 31 11 11111111 111 235789999999888764 688887754 44433322 122334577664
No 268
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.23 E-value=2.2e-08 Score=85.81 Aligned_cols=217 Identities=22% Similarity=0.273 Sum_probs=140.1
Q ss_pred CCcEEEEeCCCCceeeecccc--ccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCC
Q 017314 109 DKSIKLWDTNTGSLSSTLYGC--LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR 186 (373)
Q Consensus 109 D~~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 186 (373)
+++|..||..+|+.+-...-- ....... ..+++..+++++.++.+..||..+|+.+..+.. ...+..... ..+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~--~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV--VDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE--EETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee--eccc
Confidence 688999999888876554321 1122211 233677888889999999999999998877764 222111111 1345
Q ss_pred EEEEEeCCCcEEEEEccCCeeeeEE-eecC----ceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccc--
Q 017314 187 HVVSAAYDRTLKVWDLHKGYCVNTI-IFHS----NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA-- 259 (373)
Q Consensus 187 ~~~s~s~D~~i~vwd~~~~~~~~~~-~~~~----~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-- 259 (373)
.++.++.|+.+..+|..+|..+... .... .........++..++.+..++.|..+|+.+|+.+..........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 6777778899999999999887774 3221 11223333448889999989999999999999988776643111
Q ss_pred -------eEEEEEcCCCCEEEEeeCCC-eEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEE
Q 017314 260 -------VTSISLSRSGNIILTSGRDN-LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS 331 (373)
Q Consensus 260 -------v~~~~~~~~~~~l~s~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd 331 (373)
+..-.+..++ .+..++.++ .+.+ |+.+++..-+. ...... ....+++..|+.++.++.|.+||
T Consensus 158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~--~~~~~~-----~~~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSK--PISGIY-----SLPSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp -EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEE--CSS-EC-----ECEECCCTEEEEEETTTEEEEEE
T ss_pred ceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEe--cCCCcc-----CCceeeCCEEEEEeCCCEEEEEE
Confidence 1222222344 666666666 4555 99888744211 111111 11346778888888999999999
Q ss_pred ccCceEE
Q 017314 332 ISKADIV 338 (373)
Q Consensus 332 ~~~~~~~ 338 (373)
+.+|+.+
T Consensus 229 ~~tG~~~ 235 (238)
T PF13360_consen 229 LKTGKVV 235 (238)
T ss_dssp TTTTEEE
T ss_pred CCCCCEE
Confidence 9999865
No 269
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.21 E-value=5.1e-10 Score=92.92 Aligned_cols=154 Identities=12% Similarity=0.100 Sum_probs=113.8
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEeCCCCce--eeeccccccceEEEEEcCCC-CEEEEEeCCCcEEEEEcC-CCeeEE
Q 017314 91 CASILFEYNSARLISGGQDKSIKLWDTNTGSL--SSTLYGCLGSVLDLAITHDN-RSVIAASSSNNLYVWDVN-SGRVRH 166 (373)
Q Consensus 91 v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~-~~~~~~ 166 (373)
.-++.|++.+..++++-.+|.+.+-+.....+ ++.++.|.-+.....|+... +.+++|+.|+.+..||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 34677888899999999999998555444433 34778898888888887544 578999999999999998 334443
Q ss_pred E-eecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcc-CCeeeeEEeecCceeEEEEccCC--CEEEEEeCCCcEEEEE
Q 017314 167 T-LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH-KGYCVNTIIFHSNCNALAFSMDG--QTIFSGHIDGNLRLWD 242 (373)
Q Consensus 167 ~-~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~g--~~l~sg~~dg~i~iwd 242 (373)
. .+-|+..|.++.-+|..+.+++||++|..|++||.+ -++++..-.....|..+..+|.- ..|+++-.. -.+|-+
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~ 282 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHN-GAKILD 282 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhc-CceEEE
Confidence 3 567899999999998889999999999999999998 46666555555667788888743 233333333 355666
Q ss_pred CCC
Q 017314 243 IQT 245 (373)
Q Consensus 243 ~~~ 245 (373)
...
T Consensus 283 ~~~ 285 (339)
T KOG0280|consen 283 SSD 285 (339)
T ss_pred ecc
Confidence 544
No 270
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.20 E-value=1.1e-09 Score=92.84 Aligned_cols=156 Identities=17% Similarity=0.322 Sum_probs=113.9
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC----CceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEE-------
Q 017314 89 GGCASILFEYNSARLISGGQDKSIKLWDTNT----GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW------- 157 (373)
Q Consensus 89 ~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iw------- 157 (373)
.+++++.+.++...|+.|-..|++.-+.+.. ...++....|...+..+-|+.....+++.+.|..+.--
T Consensus 69 ~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~ 148 (404)
T KOG1409|consen 69 SPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR 148 (404)
T ss_pred CCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc
Confidence 5788999999999999999999998886532 23344455677777777777766677766666544211
Q ss_pred ---------------E-------------------cCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcc
Q 017314 158 ---------------D-------------------VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 203 (373)
Q Consensus 158 ---------------d-------------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~ 203 (373)
| .+.-.++.++.+|.+.+.++.|.+ ....+.+|..|..+.+||+.
T Consensus 149 lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 149 LGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred ccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEecc
Confidence 0 111235667889999999999987 56789999999999999996
Q ss_pred CCeeee-EE-eecCceeEEEEccCCCEEEEEeCCCcEEEEECCC
Q 017314 204 KGYCVN-TI-IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT 245 (373)
Q Consensus 204 ~~~~~~-~~-~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~ 245 (373)
-.+-.. .. .++..+..++..+--+.+++++.||.|-+||++.
T Consensus 228 g~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 228 GRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred CCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 443221 22 2334577777777788899999999999999864
No 271
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=1.3e-08 Score=94.60 Aligned_cols=204 Identities=12% Similarity=0.098 Sum_probs=122.0
Q ss_pred EecCccCcEEEEEEcCCCCEE---EEeeCCC--cEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeC-----CC
Q 017314 83 KINAHEGGCASILFEYNSARL---ISGGQDK--SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS-----SN 152 (373)
Q Consensus 83 ~~~~h~~~v~~~~~~~~~~~l---~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~-----d~ 152 (373)
.+......+.+=.|+|||+.+ ++...++ .|.+.++.+++.... ....+.....+|+|||+.|+..+. +-
T Consensus 179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di 257 (428)
T PRK01029 179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDL 257 (428)
T ss_pred EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCcce
Confidence 344455566677999999752 2333443 577778877654322 223344456789999998876653 22
Q ss_pred cEEEEEcCC---CeeEEEeecCCCcEEEEEEeeCCCCEEEEE-eCCCcEEEEEc--cC-CeeeeEEeec-CceeEEEEcc
Q 017314 153 NLYVWDVNS---GRVRHTLTGHTDKVCAVDVSKISSRHVVSA-AYDRTLKVWDL--HK-GYCVNTIIFH-SNCNALAFSM 224 (373)
Q Consensus 153 ~i~iwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~-s~D~~i~vwd~--~~-~~~~~~~~~~-~~~~~~~~~~ 224 (373)
.+.+|++.+ ++......++........|+| +++.|+.. ..++...+|.+ .. +.....+... .......|+|
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP 336 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP 336 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC
Confidence 345577765 233333333323345567888 45555544 45776666644 32 2222223222 2356788999
Q ss_pred CCCEEEEEeCC---CcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeC---CCeEEEEEccccc
Q 017314 225 DGQTIFSGHID---GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR---DNLHNLFDIRSLE 290 (373)
Q Consensus 225 ~g~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i~~~d~~~~~ 290 (373)
||+.|+..+.+ ..|.+||+.+++.. .+.... ..+....|+|||+.|+..+. ...+.++|+...+
T Consensus 337 DG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~-~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 337 DGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSP-ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 99988865443 36999999888654 333222 35677899999998764432 2456777776544
No 272
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.16 E-value=2e-08 Score=89.56 Aligned_cols=272 Identities=13% Similarity=0.127 Sum_probs=175.3
Q ss_pred CccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCC--------------
Q 017314 86 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS-------------- 151 (373)
Q Consensus 86 ~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d-------------- 151 (373)
.-.-++..+++||.|.+|++.-. .-|.+|+......+..+. ...|..+.|+|.+++|.+=+.-
T Consensus 30 ~~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 30 SENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred ccCcchhheeecCcchheehhhc-cceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 34567888999999999987554 468999988776554443 3568889999999999986543
Q ss_pred -CcEEEEEcCCCeeEEEeecCCCc--EE-EEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEee----cCceeEEEEc
Q 017314 152 -NNLYVWDVNSGRVRHTLTGHTDK--VC-AVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF----HSNCNALAFS 223 (373)
Q Consensus 152 -~~i~iwd~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~----~~~~~~~~~~ 223 (373)
+.+.+||..+|..+..+.+-..+ .+ -+.|+. +..+++-- ....+.++++ ++... .... ...+...+++
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~-~~p~~~lr~~gi~dFsis 182 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIE-EHPFKNLRPVGILDFSIS 182 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccc-cCchhhccccceeeEEec
Confidence 35999999999999888877665 33 345554 33444322 3346888887 33211 1111 1346677888
Q ss_pred cCCC--EEE-----EEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEee-----------CCCeEEEEE
Q 017314 224 MDGQ--TIF-----SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG-----------RDNLHNLFD 285 (373)
Q Consensus 224 ~~g~--~l~-----sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-----------~d~~i~~~d 285 (373)
|.|+ .|+ ..+.++++++|.+..+..+..-.... ..-..+.|.+.|++|+.-- ....+.+++
T Consensus 183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk-~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~ 261 (561)
T COG5354 183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK-VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLR 261 (561)
T ss_pred CCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe-ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEe
Confidence 8643 333 25678999999998777665544332 3345678888888765321 113455666
Q ss_pred ccccceeeeeeecCCeeecCeeeeEECCCCcEEEEE--eCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEE
Q 017314 286 IRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG--SADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASA 363 (373)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg--s~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~ 363 (373)
++...+.... ... .++...++.|.++.+++. -.+..+.++|+... +...+ ....=+.+.|||.+++++.+
T Consensus 262 ~~e~~i~V~~-~~~----~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~a 333 (561)
T COG5354 262 ITERSIPVEK-DLK----DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFA 333 (561)
T ss_pred ecccccceec-ccc----ccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEe
Confidence 6532221111 111 122335788888877654 47888999998765 33333 33344668899999999888
Q ss_pred eCC---CeEEEcC
Q 017314 364 DKN---GVVCVWT 373 (373)
Q Consensus 364 s~d---g~i~iW~ 373 (373)
+.| |.|-||+
T Consensus 334 gF~nl~gni~i~~ 346 (561)
T COG5354 334 GFDNLQGNIEIFD 346 (561)
T ss_pred cCCccccceEEec
Confidence 877 5566663
No 273
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=1.2e-08 Score=94.45 Aligned_cols=276 Identities=16% Similarity=0.166 Sum_probs=176.7
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCc---------------eeeeccccccceEEEEEcCCCCEEEEEeCCC
Q 017314 88 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGS---------------LSSTLYGCLGSVLDLAITHDNRSVIAASSSN 152 (373)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~ 152 (373)
+....++.|+....+++.||.||.+++-.+.+.. +-+++.||.++|.-+.|+.+...|-++..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3456789999999999999999999999775431 2346889999999999999999999999999
Q ss_pred cEEEEEcCCCeeEEEe--ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEE
Q 017314 153 NLYVWDVNSGRVRHTL--TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF 230 (373)
Q Consensus 153 ~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 230 (373)
.|.||-+-.|.-.... .-.+..|.+++|.. ++..+.-.-.||.|.+=.+..++.-..-.-......+.|++|...++
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence 9999987655321111 11344567777765 45555555666666554443322111100011234577999998888
Q ss_pred EEeCCCcEEEEECCCC-------eeeEEEecc---cccceEEEEE--------cCCCCEEEEeeCCCeEEEEEcccccee
Q 017314 231 SGHIDGNLRLWDIQTG-------KLLSEVAAH---SLAAVTSISL--------SRSGNIILTSGRDNLHNLFDIRSLEVC 292 (373)
Q Consensus 231 sg~~dg~i~iwd~~~~-------~~~~~~~~~---~~~~v~~~~~--------~~~~~~l~s~~~d~~i~~~d~~~~~~~ 292 (373)
.+-..|.+.++|.... .+.-..++. ....+..+.| .|+...|+.|-.+|.+.+-.-.+-...
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 8888899999997532 111111110 0112444444 357788999988888766432211100
Q ss_pred eeeeecCCeeecCeeeeEECCCCcEEEEEeCCC---------cEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEE
Q 017314 293 GSLRATGNRVASNWSRSCISPDESYVAAGSADG---------SVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASA 363 (373)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg---------~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~ 363 (373)
. +...+..+ ....++++|..||.++.|. .|.++. .-|..+.+|+-....|++++|-..|=.||.+
T Consensus 253 v-v~dtgm~~----vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 253 V-VVDTGMKI----VGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred e-EEecccEe----ecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE
Confidence 0 11111111 1234689999999988753 355543 3477788888888899999998887666655
Q ss_pred eCCCeEEE
Q 017314 364 DKNGVVCV 371 (373)
Q Consensus 364 s~dg~i~i 371 (373)
.|+.|.+
T Consensus 327 -vdsfiyf 333 (1189)
T KOG2041|consen 327 -VDSFIYF 333 (1189)
T ss_pred -ecceEEE
Confidence 3555543
No 274
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.13 E-value=1e-06 Score=75.93 Aligned_cols=218 Identities=15% Similarity=0.147 Sum_probs=137.1
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEee
Q 017314 135 DLAITH-DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF 213 (373)
Q Consensus 135 ~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~ 213 (373)
+..|.+ ++.++++--..+.|..|+..+++... +.... ...+.+...+ ..++.+..++ +.++|..++........
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 356777 45555555567899999998886543 22222 5566666434 4566566554 55559988865433332
Q ss_pred ------cCceeEEEEccCCCEEEEEeCC--------CcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEE-EeeCC
Q 017314 214 ------HSNCNALAFSMDGQTIFSGHID--------GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIIL-TSGRD 278 (373)
Q Consensus 214 ------~~~~~~~~~~~~g~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d 278 (373)
...++.+++.|+|+..++.... |.|..++.. ++....... ....+.|+|+|+++.|+ +-+..
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ESSEEEEEEETTSSEEEEEETTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--cccccceEECCcchheeeccccc
Confidence 1237899999999977765543 557777877 554333322 35678999999999765 66777
Q ss_pred CeEEEEEccccce-e---eeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEc
Q 017314 279 NLHNLFDIRSLEV-C---GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWS 354 (373)
Q Consensus 279 ~~i~~~d~~~~~~-~---~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s 354 (373)
+.|..+++..... . ..+...... ....--++++.+|.+.++....+.|.+++.. |+.+..+.-....+++++|.
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGG-PGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSS-SCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred ceeEEEeccccccceeeeeeEEEcCCC-CcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 8888888753221 1 111111110 0011236789999988888888999999987 88888777665689999994
Q ss_pred -CCCCcEEE
Q 017314 355 -GLGKPLAS 362 (373)
Q Consensus 355 -~~g~~l~s 362 (373)
|+.+.|..
T Consensus 234 g~~~~~L~v 242 (246)
T PF08450_consen 234 GPDGKTLYV 242 (246)
T ss_dssp STTSSEEEE
T ss_pred CCCCCEEEE
Confidence 66565543
No 275
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.12 E-value=1e-07 Score=79.57 Aligned_cols=232 Identities=17% Similarity=0.224 Sum_probs=127.6
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCC--ceee---eccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEe
Q 017314 94 ILFEYNSARLISGGQDKSIKLWDTNTG--SLSS---TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL 168 (373)
Q Consensus 94 ~~~~~~~~~l~s~s~D~~v~iwd~~~~--~~~~---~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 168 (373)
++.++||+.||. -.|..|.|=..+.. ..+. .-+.....-..++|+||+..|+.+...|+|+++|+....+. .+
T Consensus 3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VI 80 (282)
T ss_pred eeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-Ec
Confidence 456677766654 56777777655432 1111 11112234567999999999999999999999999764433 33
Q ss_pred ec-C------CCcEEEEEEeeCC-----CCEEEEEeCCCcEEEEEccCC-----eeeeEEee----cCceeEEEEccCCC
Q 017314 169 TG-H------TDKVCAVDVSKIS-----SRHVVSAAYDRTLKVWDLHKG-----YCVNTIIF----HSNCNALAFSMDGQ 227 (373)
Q Consensus 169 ~~-h------~~~v~~~~~~~~~-----~~~~~s~s~D~~i~vwd~~~~-----~~~~~~~~----~~~~~~~~~~~~g~ 227 (373)
.. + ...|.++.|.... ...++.-..+|.++-+-+..+ +..+++.+ ...++++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 22 2 2445566555432 224666778888877765322 23333333 24589999999988
Q ss_pred EEEEEeCCCc-EEEEECCCCeeeEEEecccccceEEEEEcCCCCE--EEEeeCCCeE------EEEEccccceeeeeeec
Q 017314 228 TIFSGHIDGN-LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNI--ILTSGRDNLH------NLFDIRSLEVCGSLRAT 298 (373)
Q Consensus 228 ~l~sg~~dg~-i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~s~~~d~~i------~~~d~~~~~~~~~~~~~ 298 (373)
+|+.|+.... -..+. .....+++-.+-.+..+ .++...|+.. .+|.+-+..........
T Consensus 161 LLlVgG~~~~~~~~s~------------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 228 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSK------------ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQE 228 (282)
T ss_pred EEEEeccCCCCCcccc------------ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccC
Confidence 8877654222 00000 00012222222111111 1122222211 22322221111110111
Q ss_pred CCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEecc
Q 017314 299 GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE 343 (373)
Q Consensus 299 ~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~ 343 (373)
.. .+..+.+||||++||+...+|.|.+|++.+-.+...++-
T Consensus 229 ~d----~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 229 QD----GIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CC----ceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 11 123467999999999999999999999998776665543
No 276
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.12 E-value=5.9e-09 Score=88.51 Aligned_cols=268 Identities=15% Similarity=0.236 Sum_probs=168.7
Q ss_pred CcEEEEEEcCCCC--EEEEeeCCCcEEEEeCCCCcee-----------------------------------ee-ccccc
Q 017314 89 GGCASILFEYNSA--RLISGGQDKSIKLWDTNTGSLS-----------------------------------ST-LYGCL 130 (373)
Q Consensus 89 ~~v~~~~~~~~~~--~l~s~s~D~~v~iwd~~~~~~~-----------------------------------~~-~~~~~ 130 (373)
..|..+.|-++++ .++..+.|.+|++|-+...... +. -.+|.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 4577888887664 5666788999999987432110 00 12466
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-e--EEEeecC-----CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 017314 131 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR-V--RHTLTGH-----TDKVCAVDVSKISSRHVVSAAYDRTLKVWDL 202 (373)
Q Consensus 131 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-~--~~~~~~h-----~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~ 202 (373)
..|.++.++.|...++++ .|-.|.+|+++--. . +..++.+ +..|++..|+|...+.++-.|..|+||+-|+
T Consensus 165 yhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm 243 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM 243 (433)
T ss_pred eEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence 778999999998877764 56689999986322 1 2222333 2346778899988888999999999999999
Q ss_pred cCCeee----eEEeec-------------CceeEEEEccCCCEEEEEeCCCcEEEEEC-CCCeeeEEEecccc-------
Q 017314 203 HKGYCV----NTIIFH-------------SNCNALAFSMDGQTIFSGHIDGNLRLWDI-QTGKLLSEVAAHSL------- 257 (373)
Q Consensus 203 ~~~~~~----~~~~~~-------------~~~~~~~~~~~g~~l~sg~~dg~i~iwd~-~~~~~~~~~~~~~~------- 257 (373)
+..... +.+..+ +.+..+.|+++|+++++-.. -+|++||+ ...+++.++..|..
T Consensus 244 R~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~ 322 (433)
T KOG1354|consen 244 RQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCS 322 (433)
T ss_pred hhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHH
Confidence 843211 111111 23567999999999997654 58999999 55667777766531
Q ss_pred -------cceEEEEEcCCCCEEEEeeCCCeEEEEEcccccee-eeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEE
Q 017314 258 -------AAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVC-GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYI 329 (373)
Q Consensus 258 -------~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~i 329 (373)
-.-..++|+.++.++.+|+..+..++|++..+... .++......... -.+ +.-+.+.+++......+
T Consensus 323 lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~----~~~-~k~~~V~~~g~r~~~~~ 397 (433)
T KOG1354|consen 323 LYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKP----RKV-LKLRLVSSSGKRKRDEI 397 (433)
T ss_pred HhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcc----ccc-ccceeeecCCCcccccc
Confidence 12346889999999999999999999996543321 111111111000 000 12244555555544322
Q ss_pred EEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEc
Q 017314 330 WSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 372 (373)
Q Consensus 330 wd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW 372 (373)
|- ..+ .....+...+|+|..+.||.+..+. +.|+
T Consensus 398 ~v-------d~l-df~kkilh~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 398 SV-------DAL-DFRKKILHTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred cc-------chh-hhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence 21 111 1223467789999988888776543 4443
No 277
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.11 E-value=4.1e-08 Score=80.83 Aligned_cols=222 Identities=11% Similarity=-0.010 Sum_probs=141.5
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCee-EEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeec-Ccee
Q 017314 141 DNRSVIAASSSNNLYVWDVNSGRV-RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCN 218 (373)
Q Consensus 141 ~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~-~~~~ 218 (373)
...+|+.|+.-|...+|...+.+. .+....|...|.-+.-.....--+.-++.|.++++.++.-+......-.. -..+
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 345788999999999999986643 33444455544322211112223566889999999988654322222111 2378
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCC-eeeEE-EecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeee
Q 017314 219 ALAFSMDGQTIFSGHIDGNLRLWDIQTG-KLLSE-VAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR 296 (373)
Q Consensus 219 ~~~~~~~g~~l~sg~~dg~i~iwd~~~~-~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~ 296 (373)
++++++|+++.++.+....|-.|.+... +.+.. ........-.+.+|+.....+|++..|+.+.+||+|.........
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 9999999999999999999999988643 22222 222233455678899999999999999999999999765433222
Q ss_pred -ecCCeeecCeeeeEECCCCc--EEEEEeCCCcEEEEEccCceEEEEec-------cCCcc-EEEEEEcCCCCcEEE
Q 017314 297 -ATGNRVASNWSRSCISPDES--YVAAGSADGSVYIWSISKADIVRTLK-------EHTAP-VLSCSWSGLGKPLAS 362 (373)
Q Consensus 297 -~~~~~~~~~~~~~~~s~~~~--~l~sgs~Dg~i~iwd~~~~~~~~~l~-------~h~~~-V~~~~~s~~g~~l~s 362 (373)
.........+..+-|+|.|. +|.-.-.=+.+.+-|+.++...+.+. .|... |....|+.++.-+..
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v 319 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDV 319 (344)
T ss_pred cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccc
Confidence 12222333455566887553 33333445678999998876654432 24333 777778777654433
No 278
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=1e-08 Score=95.74 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=95.4
Q ss_pred cccceEEecCccCcEEEEEEcCCC------------CEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcC---C
Q 017314 77 PSTCKHKINAHEGGCASILFEYNS------------ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH---D 141 (373)
Q Consensus 77 ~~~~~~~~~~h~~~v~~~~~~~~~------------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~ 141 (373)
..+..+.+..|...|+.+.|.|-. -+||++...|.|.+||...+.....+..|..++.++.|-+ +
T Consensus 44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~ 123 (1062)
T KOG1912|consen 44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDD 123 (1062)
T ss_pred hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCc
Confidence 334556778899999999987542 2466777779999999999998889999999999888754 3
Q ss_pred C-CEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 017314 142 N-RSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD 201 (373)
Q Consensus 142 ~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd 201 (373)
. ..|++-....++.+|+..+|+....+........|+.+.|.+.+++..-+..|.+-+-+
T Consensus 124 Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 124 SRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCK 184 (1062)
T ss_pred chheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEe
Confidence 4 45777788889999999999988777666666777888887777766555555554443
No 279
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=4.4e-08 Score=88.28 Aligned_cols=269 Identities=12% Similarity=0.202 Sum_probs=165.7
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeC-----------CCcEEEEEcC
Q 017314 92 ASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS-----------SNNLYVWDVN 160 (373)
Q Consensus 92 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~-----------d~~i~iwd~~ 160 (373)
+-+.|||-|++|+|--. .-|.+|--++-...+.+. | ..|.-+.|||+.++|++-|. ...+.|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk-~GI~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHK-QGIALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEec-cceeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 45789999999998665 457889766555454443 3 34677899999999998653 2579999999
Q ss_pred CCeeEEEeecCCC--cEE-EEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEe-ecCceeEEEEccCCCEEEEEe--C
Q 017314 161 SGRVRHTLTGHTD--KVC-AVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-FHSNCNALAFSMDGQTIFSGH--I 234 (373)
Q Consensus 161 ~~~~~~~~~~h~~--~v~-~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~sg~--~ 234 (373)
+|...+.|..-.. .+. -+.|+. +.++++.-.. .+|.|++..+-..+..-. -...+....|+|.++.|+=-. .
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred ccchhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 9998888766322 222 345665 5667664444 578999876633322111 124577889999988776221 1
Q ss_pred ---CCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEee----------CCCeEEEEEccccce-eeeeeecCC
Q 017314 235 ---DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG----------RDNLHNLFDIRSLEV-CGSLRATGN 300 (373)
Q Consensus 235 ---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~d~~i~~~d~~~~~~-~~~~~~~~~ 300 (373)
-..+.+-.+.+++.+++...++ ..=..+.|-.+|.+|..-- .=..+.|+.++...+ +..+.
T Consensus 369 ~~~parvtL~evPs~~~iRt~nlfn-VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve---- 443 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNLFN-VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE---- 443 (698)
T ss_pred cCCcceEEEEecCccceeeecccee-eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee----
Confidence 2357777888887777666554 2334466777888775421 111123343332221 11111
Q ss_pred eeecCeeeeEECCCCcEEEEEeC---CCcEEEEEccC----ceEEEEeccCCccEEEEEEcCCCCcEEEE---eCCCeEE
Q 017314 301 RVASNWSRSCISPDESYVAAGSA---DGSVYIWSISK----ADIVRTLKEHTAPVLSCSWSGLGKPLASA---DKNGVVC 370 (373)
Q Consensus 301 ~~~~~~~~~~~s~~~~~l~sgs~---Dg~i~iwd~~~----~~~~~~l~~h~~~V~~~~~s~~g~~l~s~---s~dg~i~ 370 (373)
+...+-..++-|.|..+++-+. ..++.+|.+.+ .+++..+.. ...+.+.|||.|++++.+ |..|.+.
T Consensus 444 -lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~ 520 (698)
T KOG2314|consen 444 -LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLE 520 (698)
T ss_pred -cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceE
Confidence 1111222345688887766443 35799998873 233444433 456789999999998776 4456666
Q ss_pred EcC
Q 017314 371 VWT 373 (373)
Q Consensus 371 iW~ 373 (373)
++|
T Consensus 521 F~D 523 (698)
T KOG2314|consen 521 FYD 523 (698)
T ss_pred EEe
Confidence 553
No 280
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=2.9e-08 Score=89.50 Aligned_cols=249 Identities=14% Similarity=0.254 Sum_probs=160.2
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCC--EEE-----EEeCCCcEEEEEcCCCee
Q 017314 92 ASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR--SVI-----AASSSNNLYVWDVNSGRV 164 (373)
Q Consensus 92 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~-----s~s~d~~i~iwd~~~~~~ 164 (373)
++..|+.|..+. .-=..+.|.+|+..+.+.. .-.-|...++.+.++|-+. .++ ..+.-..|+||...-+..
T Consensus 129 W~~qfs~dEsl~-arlv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLA-ARLVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhh-hhhhcceEEEEecCCccce-eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 577888877532 2233568999998763322 2223567788888888743 232 134445799998762211
Q ss_pred E-----EEeecCCCcEEEEEEeeCCCCEEEEE--eCCC---------cEEEEEccCCeeeeEEeecCceeEEEEccCCCE
Q 017314 165 R-----HTLTGHTDKVCAVDVSKISSRHVVSA--AYDR---------TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQT 228 (373)
Q Consensus 165 ~-----~~~~~h~~~v~~~~~~~~~~~~~~s~--s~D~---------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~ 228 (373)
- ++|- -.+.| .+.|++....+|+-+ .-|+ ++.+.++....+.-.+.....|.++.|+|+|+-
T Consensus 207 ~~~~a~ksFF-kadkv-qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 207 HQPVANKSFF-KADKV-QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred cchhhhcccc-cccee-EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 1 1111 11222 345665444444433 3343 577777774444444444567899999999987
Q ss_pred EEE--EeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCC---eEEEEEccccceeeeeeecCCeee
Q 017314 229 IFS--GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN---LHNLFDIRSLEVCGSLRATGNRVA 303 (373)
Q Consensus 229 l~s--g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~ 303 (373)
+++ |-+-..+.|+|++- .++..+.. ++-+++-|+|.|++|+-+|.++ .+-+||+.+.+.+..+.......
T Consensus 285 F~VvyGfMPAkvtifnlr~-~~v~df~e---gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~- 359 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLRG-KPVFDFPE---GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTV- 359 (566)
T ss_pred EEEEEecccceEEEEcCCC-CEeEeCCC---CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceE-
Confidence 654 66778899999974 45554433 5678899999999999988774 68999999888777776554432
Q ss_pred cCeeeeEECCCCcEEEEEeC------CCcEEEEEccCceEEEEeccCCccEEEEEEcCC
Q 017314 304 SNWSRSCISPDESYVAAGSA------DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGL 356 (373)
Q Consensus 304 ~~~~~~~~s~~~~~l~sgs~------Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~ 356 (373)
+.++|||+||+|++. |..++||++. |.++..-.- ..+.+.+.|-|.
T Consensus 360 -----~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f-~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 360 -----FEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMF-KSELLQVEWRPF 411 (566)
T ss_pred -----EEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceeehhhh-hHhHhheeeeec
Confidence 458999999998865 6789999986 444432111 115677888764
No 281
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.8e-07 Score=81.36 Aligned_cols=255 Identities=16% Similarity=0.182 Sum_probs=148.0
Q ss_pred EEEEeCCCCceeeeccccccceEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEE
Q 017314 112 IKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVS 190 (373)
Q Consensus 112 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s 190 (373)
|++.+..+-+....+.++...|.+++|+|..+ ++..++.+++|+|.|+++..+...+..| ..+++++|...+.+++..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 44444444444445667777899999999987 7889999999999999999999999888 889999999888889999
Q ss_pred EeCCCcEEEEEccCCee-eeEEeec---CceeEE------EEccCCCEEEEEeCCCcEEEEECCC--CeeeEEEeccccc
Q 017314 191 AAYDRTLKVWDLHKGYC-VNTIIFH---SNCNAL------AFSMDGQTIFSGHIDGNLRLWDIQT--GKLLSEVAAHSLA 258 (373)
Q Consensus 191 ~s~D~~i~vwd~~~~~~-~~~~~~~---~~~~~~------~~~~~g~~l~sg~~dg~i~iwd~~~--~~~~~~~~~~~~~ 258 (373)
|-..|.|.++|++...- +..+... ..+-.+ ...+.|..|+..+.+ ...|.+.. +.....+.....+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCc
Confidence 99999999999986432 1111110 111111 223334444444332 55666532 2222222222234
Q ss_pred ceEEEEEcCCCCEEEEeeCCC----eEEE----EEcccccee-eeeeec-CC---eeecCeeeeEECCCCcEEEE-EeCC
Q 017314 259 AVTSISLSRSGNIILTSGRDN----LHNL----FDIRSLEVC-GSLRAT-GN---RVASNWSRSCISPDESYVAA-GSAD 324 (373)
Q Consensus 259 ~v~~~~~~~~~~~l~s~~~d~----~i~~----~d~~~~~~~-~~~~~~-~~---~~~~~~~~~~~s~~~~~l~s-gs~D 324 (373)
...++++++-.+.++..-+.+ .++. .|.+.+..+ +.-... +. +....- ...-.++..+|+. |.+-
T Consensus 332 ~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~-ai~~~~~nn~iv~~gd~t 410 (463)
T KOG1645|consen 332 ICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQ-AIRAVEDNNYIVVVGDST 410 (463)
T ss_pred ceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCccccccccc-ceeccccccEEEEecCCc
Confidence 566666666555544433321 0000 011111111 000000 00 000000 0111355666654 5566
Q ss_pred CcEEEEEccCceEEEEeccCCccEEEEEEcC-CC-CcEEEEeCCCeEEEc
Q 017314 325 GSVYIWSISKADIVRTLKEHTAPVLSCSWSG-LG-KPLASADKNGVVCVW 372 (373)
Q Consensus 325 g~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~-~g-~~l~s~s~dg~i~iW 372 (373)
..+.+||..+++.++++.-. .+|.++.... +| .||+.-. |..++|+
T Consensus 411 n~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iy 458 (463)
T KOG1645|consen 411 NELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIY 458 (463)
T ss_pred ceeEEeccchhheeeecccC-cceeecceeecCCcchhhhee-cceEEEE
Confidence 78999999999999988644 7888887544 33 4666554 4456654
No 282
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.08 E-value=1.4e-06 Score=74.99 Aligned_cols=263 Identities=18% Similarity=0.286 Sum_probs=162.3
Q ss_pred CCcEEEEeCCCCc--e-eeeccccccceEEEEEcCCCCEEEEEeCC---CcEEEEEcC--CCeeEE--EeecCCCcEEEE
Q 017314 109 DKSIKLWDTNTGS--L-SSTLYGCLGSVLDLAITHDNRSVIAASSS---NNLYVWDVN--SGRVRH--TLTGHTDKVCAV 178 (373)
Q Consensus 109 D~~v~iwd~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~l~s~s~d---~~i~iwd~~--~~~~~~--~~~~h~~~v~~~ 178 (373)
+.-|.+|++.+.. . ...+....+.++-++|+|+++.|+++..+ +.|--|.++ +|++.. ....-..+-+-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 5679999987432 2 12233456677889999999999988765 566666554 355422 111112233667
Q ss_pred EEeeCCCCEEEEEeC-CCcEEEEEccC-Cee---eeEEeecC----------ceeEEEEccCCCEEEEEeC-CCcEEEEE
Q 017314 179 DVSKISSRHVVSAAY-DRTLKVWDLHK-GYC---VNTIIFHS----------NCNALAFSMDGQTIFSGHI-DGNLRLWD 242 (373)
Q Consensus 179 ~~~~~~~~~~~s~s~-D~~i~vwd~~~-~~~---~~~~~~~~----------~~~~~~~~~~g~~l~sg~~-dg~i~iwd 242 (373)
++++ ++.+++++.. -|.|.++-++. |.. +..+.+.. .+-..-++|++++|++..- --.|.+|+
T Consensus 95 svd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 7776 5678887765 58899998865 322 12222211 2567889999999988653 23589999
Q ss_pred CCCCeeeEEE--ecccccceEEEEEcCCCCEEEEeeC-CCeEEEEEcccc-ceeeeeeec---CCeee--cCeeeeEECC
Q 017314 243 IQTGKLLSEV--AAHSLAAVTSISLSRSGNIILTSGR-DNLHNLFDIRSL-EVCGSLRAT---GNRVA--SNWSRSCISP 313 (373)
Q Consensus 243 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~~~d~~~~-~~~~~~~~~---~~~~~--~~~~~~~~s~ 313 (373)
+..|++...- .......-.-|.|+|++++....++ +++|.+|..... .....++.. ..... ..-..+.++|
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 9877643221 1122356788999999998776654 789999987763 222222211 11100 1112356899
Q ss_pred CCcEEEEEeC-CCcEEEEEccCc-eEEEEe---ccCCccEEEEEEcCCCCcEEEEeCCC-eEEEc
Q 017314 314 DESYVAAGSA-DGSVYIWSISKA-DIVRTL---KEHTAPVLSCSWSGLGKPLASADKNG-VVCVW 372 (373)
Q Consensus 314 ~~~~l~sgs~-Dg~i~iwd~~~~-~~~~~l---~~h~~~V~~~~~s~~g~~l~s~s~dg-~i~iW 372 (373)
||+||.++.. ...|.++.+... ..+..+ ..+...-....|+|.|++|+.+..|+ +|.++
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 9999987642 337888887653 222222 22333357899999999998887764 45554
No 283
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.08 E-value=1.9e-06 Score=74.21 Aligned_cols=214 Identities=16% Similarity=0.155 Sum_probs=134.2
Q ss_pred EEEEcC-CCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEc-CCCCEEEEEeCCCcEEEEEcCCCeeEEEeec
Q 017314 93 SILFEY-NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT-HDNRSVIAASSSNNLYVWDVNSGRVRHTLTG 170 (373)
Q Consensus 93 ~~~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 170 (373)
+..|.+ ++.++++--..+.|..|+..++.....-. .. ...+++. ++ ..++.+..++ +.++|+.+++....+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~--~~-~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL--PG-PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES--SS-EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec--CC-CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 457887 66677777778999999998876533111 12 6677777 55 5555555544 45559998865544432
Q ss_pred -----CCCcEEEEEEeeCCCCEEEEEeCC--------CcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEE-EEeCCC
Q 017314 171 -----HTDKVCAVDVSKISSRHVVSAAYD--------RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF-SGHIDG 236 (373)
Q Consensus 171 -----h~~~v~~~~~~~~~~~~~~s~s~D--------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~-sg~~dg 236 (373)
.......+++.+ ++++.++.... +.|..++.. +........-...+.++|+|+++.|+ +-+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence 234467788877 56666665543 456667766 44433333334578999999999876 566788
Q ss_pred cEEEEECCCCe--e--eEEE-ecccc-cceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeE
Q 017314 237 NLRLWDIQTGK--L--LSEV-AAHSL-AAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC 310 (373)
Q Consensus 237 ~i~iwd~~~~~--~--~~~~-~~~~~-~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (373)
.|..+|+.... . ...+ ..... .....++++.+|++.++....+.|.++|.. ++....+...... ...++
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~----~t~~~ 231 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPR----PTNCA 231 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSS----EEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCC----EEEEE
Confidence 89999985322 1 1122 11111 247889999999999988888999999987 6666666544222 23456
Q ss_pred E-CCCCcEE
Q 017314 311 I-SPDESYV 318 (373)
Q Consensus 311 ~-s~~~~~l 318 (373)
| .++...|
T Consensus 232 fgg~~~~~L 240 (246)
T PF08450_consen 232 FGGPDGKTL 240 (246)
T ss_dssp EESTTSSEE
T ss_pred EECCCCCEE
Confidence 7 3554443
No 284
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.07 E-value=2.1e-07 Score=86.06 Aligned_cols=258 Identities=14% Similarity=0.162 Sum_probs=158.0
Q ss_pred CCEEEEeeCCCcEEEEeCCCCceeeeccccccceEE-EEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEE-
Q 017314 100 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLD-LAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCA- 177 (373)
Q Consensus 100 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~- 177 (373)
+..++.++.++.+.-+|.++|+.+-..... +.+.+ ..+ .+..++.++.++.+.-+|..+|+.+..+.........
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 557778889999999999999875443322 11211 111 2456777888999999999999988776532111100
Q ss_pred EEEee-CCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCc--------eeEEEEcc--CCCEEEEEeCCCcEEEEECCCC
Q 017314 178 VDVSK-ISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN--------CNALAFSM--DGQTIFSGHIDGNLRLWDIQTG 246 (373)
Q Consensus 178 ~~~~~-~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~--------~~~~~~~~--~g~~l~sg~~dg~i~iwd~~~~ 246 (373)
...+| .....++.++.++.+...|..+|+.......... ...+..+| .+..++.++.+|.+..+|..+|
T Consensus 197 ~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 197 GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 00001 0123566778889999999988876544322110 00111122 3557778888999999999999
Q ss_pred eeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCc
Q 017314 247 KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGS 326 (373)
Q Consensus 247 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~ 326 (373)
+.+....... ...+. ..+..++.++.++.+..+|..+++..-......... +....+ .+.+|+.++.||.
T Consensus 277 ~~~W~~~~~~---~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~---~~sp~v--~~g~l~v~~~~G~ 346 (394)
T PRK11138 277 QIVWKREYGS---VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL---LTAPVL--YNGYLVVGDSEGY 346 (394)
T ss_pred CEEEeecCCC---ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc---ccCCEE--ECCEEEEEeCCCE
Confidence 8776543221 11122 245677777888999999988776533221111111 111111 3567788999999
Q ss_pred EEEEEccCceEEEEeccCCccEEE-EEEcCCCCcEEEEeCCCeEEEc
Q 017314 327 VYIWSISKADIVRTLKEHTAPVLS-CSWSGLGKPLASADKNGVVCVW 372 (373)
Q Consensus 327 i~iwd~~~~~~~~~l~~h~~~V~~-~~~s~~g~~l~s~s~dg~i~iW 372 (373)
|++.|..+|+.+...+-....+.+ ..+ .+..|..++.||.|..+
T Consensus 347 l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 347 LHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAI 391 (394)
T ss_pred EEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEE
Confidence 999999999988766543333322 122 24578888999988764
No 285
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=9.1e-10 Score=93.39 Aligned_cols=149 Identities=20% Similarity=0.336 Sum_probs=118.2
Q ss_pred EEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-----eeEEEeecCCCcEEEE
Q 017314 104 ISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG-----RVRHTLTGHTDKVCAV 178 (373)
Q Consensus 104 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-----~~~~~~~~h~~~v~~~ 178 (373)
++.|.+..|-+-|+++|-. ......+.|.++.|...+++++.|..+|.|..+|++.. .+.+.+ -|...|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~--qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ--QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeecccc--cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence 6777888899999988743 22235677888889888899999999999999999764 233333 388889988
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEEccCCee---eeEEeecCc---eeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEE
Q 017314 179 DVSKISSRHVVSAAYDRTLKVWDLHKGYC---VNTIIFHSN---CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEV 252 (373)
Q Consensus 179 ~~~~~~~~~~~s~s~D~~i~vwd~~~~~~---~~~~~~~~~---~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~ 252 (373)
..-..++.++.+.+.+|+|++||.+.-++ +.++..|.+ ..-+-+.+....+++++.|...|||.++.|.++.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 77666778899999999999999987666 777777754 233455677788999999999999999999998877
Q ss_pred ecc
Q 017314 253 AAH 255 (373)
Q Consensus 253 ~~~ 255 (373)
...
T Consensus 385 pf~ 387 (425)
T KOG2695|consen 385 PFP 387 (425)
T ss_pred CCC
Confidence 554
No 286
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.02 E-value=5e-07 Score=77.32 Aligned_cols=215 Identities=19% Similarity=0.180 Sum_probs=137.7
Q ss_pred CCcEEEEEcCCCeeEEEeec---CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCC
Q 017314 151 SNNLYVWDVNSGRVRHTLTG---HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQ 227 (373)
Q Consensus 151 d~~i~iwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~ 227 (373)
+++|..||..+|+.+....- ....+. ..+ + .+..+++++.++.+..||..+|+.+..+.....+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~-~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVA-TAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEE-TEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccc-eEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eeccc
Confidence 67899999999998877753 222221 112 1 35678888999999999999998887776544322211 23456
Q ss_pred EEEEEeCCCcEEEEECCCCeeeEEE-eccc--ccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeec
Q 017314 228 TIFSGHIDGNLRLWDIQTGKLLSEV-AAHS--LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVAS 304 (373)
Q Consensus 228 ~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~--~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 304 (373)
.++.++.|+.|+.+|..+|+.+... .... ............+..++.+..++.+..+|+++++.+-...........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 6777778899999999999998874 3221 011222223333788888888999999999998887666553322111
Q ss_pred ------CeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 305 ------NWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 305 ------~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
......+..++ .+..++.+|.+.-+|+.+++.+-... ...+.. ...+++..|+.++.++.|..|+
T Consensus 158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEE
T ss_pred ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEE
Confidence 11122233345 77777777764444999998663222 223322 1446778888888999998874
No 287
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=9.7e-09 Score=90.15 Aligned_cols=252 Identities=17% Similarity=0.225 Sum_probs=171.8
Q ss_pred ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC--C-ceeeeccccccceEEEEEcCCCCEEEEEeC-CCcEEEEEcCCC
Q 017314 87 HEGGCASILFEYNSARLISGGQDKSIKLWDTNT--G-SLSSTLYGCLGSVLDLAITHDNRSVIAASS-SNNLYVWDVNSG 162 (373)
Q Consensus 87 h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~-d~~i~iwd~~~~ 162 (373)
|...|+.+..+. .+++.+|+.||.++.|--.. + ..+..+..|.+.+.+++.+-++.++.+.+. |+.++++|+++-
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 667777665543 56899999999999997543 1 335567788899999999999999999787 999999999865
Q ss_pred eeEEEee--cCCCcEEEEEEeeCCC--CEEEEEeCCCcEEEEEccCCeeeeEE--e-ecCceeEEEEccCCCEEEEEeCC
Q 017314 163 RVRHTLT--GHTDKVCAVDVSKISS--RHVVSAAYDRTLKVWDLHKGYCVNTI--I-FHSNCNALAFSMDGQTIFSGHID 235 (373)
Q Consensus 163 ~~~~~~~--~h~~~v~~~~~~~~~~--~~~~s~s~D~~i~vwd~~~~~~~~~~--~-~~~~~~~~~~~~~g~~l~sg~~d 235 (373)
..+..++ --.+.+..+ .++.+. ...++.-.++.+.++|-..+.|..-+ . +-+++..+-+.|-+..+++....
T Consensus 87 DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred chhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 4332211 111122211 122111 22334456788999997765432221 2 23568889999999999999999
Q ss_pred CcEEEEECCC------CeeeEEEe--------cccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecC--
Q 017314 236 GNLRLWDIQT------GKLLSEVA--------AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATG-- 299 (373)
Q Consensus 236 g~i~iwd~~~------~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~-- 299 (373)
|.|.-|.... .++...+. .......+++.|+|++..+.+-+.|..|++++.++++.++.+....
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence 9999998762 11111111 0112567899999999999999999999999998876544331100
Q ss_pred --------Ce-------------------eecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEe
Q 017314 300 --------NR-------------------VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL 341 (373)
Q Consensus 300 --------~~-------------------~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l 341 (373)
.. -.......+|...|.+|+-|+-=| |++.++.++++++.+
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 00 001122357888999999999887 999999998877765
No 288
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.01 E-value=9.2e-10 Score=65.17 Aligned_cols=39 Identities=36% Similarity=0.659 Sum_probs=36.9
Q ss_pred ceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 335 ADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 335 ~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
++++.++.+|.++|++++|+|++++|++++.|+.|++|+
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999996
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.00 E-value=1.5e-09 Score=100.47 Aligned_cols=205 Identities=18% Similarity=0.293 Sum_probs=140.1
Q ss_pred EEecCccCcEEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCc-eeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 017314 82 HKINAHEGGCASILFEYNS-ARLISGGQDKSIKLWDTNTGS-LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV 159 (373)
Q Consensus 82 ~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 159 (373)
..+-+|..+|+.+-|.+.. ..|++++.|..|..||+.+.. ....+..-......++|+-....+++.+..+.|++||+
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~ 187 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDL 187 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEec
Confidence 4566899999999999854 589999999999999998653 33333333344556788877777788888899999999
Q ss_pred CCC-eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCe--eeeEEeecCceeEEEEcc--CCCEEEEEeC
Q 017314 160 NSG-RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY--CVNTIIFHSNCNALAFSM--DGQTIFSGHI 234 (373)
Q Consensus 160 ~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~--~g~~l~sg~~ 234 (373)
+.| .++.++++|...|..++|....-..+.+++.|++|+.||..+.. ..+++.....+..-.+.| +|.++.---.
T Consensus 188 r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G 267 (1081)
T KOG0309|consen 188 RKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVG 267 (1081)
T ss_pred cCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccC
Confidence 865 68889999999999999887666678999999999999987543 223333333333334444 2222221111
Q ss_pred CCcEEE---------EECCC-CeeeEEEecccccceEEEEE--------cCCC--CEEEEeeCCCeEEEEEcc
Q 017314 235 DGNLRL---------WDIQT-GKLLSEVAAHSLAAVTSISL--------SRSG--NIILTSGRDNLHNLFDIR 287 (373)
Q Consensus 235 dg~i~i---------wd~~~-~~~~~~~~~~~~~~v~~~~~--------~~~~--~~l~s~~~d~~i~~~d~~ 287 (373)
+..+.+ |+..+ .+.++.+.+|. ..|....| +.+. -.|++=+.|..+++|.+.
T Consensus 268 ~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~-D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 268 GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD-DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred CeeeeeccccchhhhhccccCCcceeeecCcc-hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 123333 33322 35678888886 34433333 2222 368999999999999875
No 290
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.00 E-value=7.7e-09 Score=84.62 Aligned_cols=159 Identities=17% Similarity=0.193 Sum_probs=99.1
Q ss_pred CccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCcee-eecc-ccccceEEEEEcCCCCEEEEEeC-----CCcEEEEE
Q 017314 86 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLS-STLY-GCLGSVLDLAITHDNRSVIAASS-----SNNLYVWD 158 (373)
Q Consensus 86 ~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~l~s~s~-----d~~i~iwd 158 (373)
.|.++-..-..+-.++.+++++.||.+.+.+.+.-..+ .... .|.+. .+..+...++.+.++.. -+..+.|+
T Consensus 87 ~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~ 165 (319)
T KOG4714|consen 87 KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANT 165 (319)
T ss_pred ccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeec
Confidence 45555444455666789999999999999998652111 1111 11111 11222233444443322 13455666
Q ss_pred cCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeee-EEee-cCceeEEEEcc-CCCEEEEEeCC
Q 017314 159 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN-TIIF-HSNCNALAFSM-DGQTIFSGHID 235 (373)
Q Consensus 159 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~-~~~~-~~~~~~~~~~~-~g~~l~sg~~d 235 (373)
++..+....-..--+.|.+++-+|...+.+++|+.||.+-+||.+...... .+.. ..++..+-|+| ++..|++++.|
T Consensus 166 ~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sed 245 (319)
T KOG4714|consen 166 LDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSED 245 (319)
T ss_pred ccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCC
Confidence 543221111111223488888889888888999999999999998763222 1222 34578899999 67889999999
Q ss_pred CcEEEEECCC
Q 017314 236 GNLRLWDIQT 245 (373)
Q Consensus 236 g~i~iwd~~~ 245 (373)
|.+-.||..+
T Consensus 246 Gslw~wdas~ 255 (319)
T KOG4714|consen 246 GSLWHWDAST 255 (319)
T ss_pred CcEEEEcCCC
Confidence 9999999865
No 291
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=1.6e-08 Score=93.59 Aligned_cols=231 Identities=17% Similarity=0.262 Sum_probs=157.5
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe---------------eEEEeecCCCcEEEEEEeeCCCCEEEEEeCCC
Q 017314 131 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR---------------VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR 195 (373)
Q Consensus 131 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~---------------~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~ 195 (373)
....+++|+....++++|+.||.++|-.+.+.. .-+++.||...|..+.|+.. ...+-|...+|
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~-~QKLTtSDt~G 93 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN-NQKLTTSDTSG 93 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc-cccccccCCCc
Confidence 346788999999999999999999998876431 23578899999999999864 34577778899
Q ss_pred cEEEEEccCCeeeeEEee---cCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeee-EEEecccccceEEEEEcCCCCE
Q 017314 196 TLKVWDLHKGYCVNTIIF---HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL-SEVAAHSLAAVTSISLSRSGNI 271 (373)
Q Consensus 196 ~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ 271 (373)
-|.+|-+-+|.....+.. .+-+.+++|+.||..+.....||.|-+=.+...+.- +.+.+ .....+.|++|.+.
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg---~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG---QLLAHVLWSEDLEQ 170 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch---heccceeecccHHH
Confidence 999999877654333322 234788999999999988888888877655443321 11222 23446789999998
Q ss_pred EEEeeCCCeEEEEEcccc-----ceee------eeeecCCeeec-Ceee---eEECCCCcEEEEEeCCCcEEEEEccCc-
Q 017314 272 ILTSGRDNLHNLFDIRSL-----EVCG------SLRATGNRVAS-NWSR---SCISPDESYVAAGSADGSVYIWSISKA- 335 (373)
Q Consensus 272 l~s~~~d~~i~~~d~~~~-----~~~~------~~~~~~~~~~~-~~~~---~~~s~~~~~l~sgs~Dg~i~iwd~~~~- 335 (373)
++-+-..+.+.++|.... +... .+...+..+.. .|.. ....||...|+.+-..|.+.|-.-.+.
T Consensus 171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP 250 (1189)
T ss_pred HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence 888888899999996521 1111 11101111111 0110 113578889999999999988754432
Q ss_pred eEEEEeccCCccEEEEEEcCCCCcEEEEeCCC
Q 017314 336 DIVRTLKEHTAPVLSCSWSGLGKPLASADKNG 367 (373)
Q Consensus 336 ~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg 367 (373)
.++- +. ..-.|....|+|+|..||.+|.|.
T Consensus 251 ~Pvv-~d-tgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 251 EPVV-VD-TGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred CCeE-Ee-cccEeecceecCCCcEEEEccCcc
Confidence 2322 21 224578999999999999998763
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=1.1e-06 Score=81.36 Aligned_cols=191 Identities=18% Similarity=0.131 Sum_probs=115.5
Q ss_pred ceEEEEEcCCCCE-EEEEeCC---CcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCC--CcEEEEEccCC
Q 017314 132 SVLDLAITHDNRS-VIAASSS---NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD--RTLKVWDLHKG 205 (373)
Q Consensus 132 ~v~~~~~~~~~~~-l~s~s~d---~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D--~~i~vwd~~~~ 205 (373)
......|+|||+. ++..+.+ ..|.++|+.+++...... ..+.+....|+|.....+++.+.+ ..|.++|+..+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6677899999985 5544443 469999998887654433 444455667888544455555544 45677788777
Q ss_pred eeeeEEeecC-ceeEEEEccCCCEEEEEe-CCC--cEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCC---
Q 017314 206 YCVNTIIFHS-NCNALAFSMDGQTIFSGH-IDG--NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD--- 278 (373)
Q Consensus 206 ~~~~~~~~~~-~~~~~~~~~~g~~l~sg~-~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--- 278 (373)
...+ +.... ......|+|||+.|+-.+ ..+ .|.+.|+.+++..+.. ... . ....|+|+|+.|+-.+..
T Consensus 268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt-~~g-~--~~~~~SPDG~~Ia~~~~~~~~ 342 (419)
T PRK04043 268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV-FHG-K--NNSSVSTYKNYIVYSSRETNN 342 (419)
T ss_pred cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc-cCC-C--cCceECCCCCEEEEEEcCCCc
Confidence 5433 32222 233467999998776444 333 5788888877653322 211 1 124899999988766543
Q ss_pred ------CeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCC-C--cEEEEEccC
Q 017314 279 ------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-G--SVYIWSISK 334 (373)
Q Consensus 279 ------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~D-g--~i~iwd~~~ 334 (373)
..+.+.|+...+. ..+..... . ....++|||++|+-.+.+ + .+.+.++..
T Consensus 343 ~~~~~~~~I~v~d~~~g~~-~~LT~~~~--~---~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 343 EFGKNTFNLYLISTNSDYI-RRLTANGV--N---QFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred ccCCCCcEEEEEECCCCCe-EECCCCCC--c---CCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 2567777766543 23332211 1 124589999987765543 2 355555543
No 293
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=3.2e-09 Score=90.19 Aligned_cols=163 Identities=17% Similarity=0.249 Sum_probs=123.2
Q ss_pred EEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCC-----eeeEEEecccccceEE
Q 017314 188 VVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG-----KLLSEVAAHSLAAVTS 262 (373)
Q Consensus 188 ~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~-----~~~~~~~~~~~~~v~~ 262 (373)
-++.+.+..+-+-|+.+|.. +.+...++|.++.|...++.++.|+.+|.|-.+|++.. .+.+.+ .| ...|++
T Consensus 227 hfs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh-~Ssvts 303 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YH-DSSVTS 303 (425)
T ss_pred eecccccceeEEEEeecccc-cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-Ec-Ccchhh
Confidence 36677788888889888743 23445567888889888999999999999999999864 222222 23 368888
Q ss_pred EEEcC-CCCEEEEeeCCCeEEEEEccccce---eeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEE
Q 017314 263 ISLSR-SGNIILTSGRDNLHNLFDIRSLEV---CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV 338 (373)
Q Consensus 263 ~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~ 338 (373)
+..-. ++++|.+.+.++.|++||+|..+. +.++.+|.+.. ......+.+....++++++|-..|||.+..+.++
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~--a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLS--AYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL 381 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccc--cccccccccccceEEEccCeeEEEEEecccCcee
Confidence 87766 788999999999999999997766 66666665433 3334456788889999999999999999999999
Q ss_pred EEeccCCc----cEEEEEEcC
Q 017314 339 RTLKEHTA----PVLSCSWSG 355 (373)
Q Consensus 339 ~~l~~h~~----~V~~~~~s~ 355 (373)
.++..... .+.+++|..
T Consensus 382 ~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 382 CTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eccCCCCccccccccceehhc
Confidence 88765432 345666653
No 294
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=3.6e-08 Score=86.66 Aligned_cols=273 Identities=18% Similarity=0.178 Sum_probs=175.6
Q ss_pred HHHHhcccccceeeccccCccccccccccccceEEecCccCcEEEEEEcCCCCEEEEeeC-CCcEEEEeCCCCceeeecc
Q 017314 49 LEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQ-DKSIKLWDTNTGSLSSTLY 127 (373)
Q Consensus 49 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~ 127 (373)
.+-+.+.+.||....|...... -......+.+|.+.+.+++.+.++-.+.|.+. |..+|++|+++-..+..++
T Consensus 20 a~fiiqASlDGh~KFWkKs~is------GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiK 93 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRIS------GVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIK 93 (558)
T ss_pred hheEEeeecchhhhhcCCCCcc------ceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcc
Confidence 3445566677776665432200 01122346789999999999999999999888 9999999998765442221
Q ss_pred c--cccceEEEEEcCCC-C-EE-EEEeCCCcEEEEEcCCC--eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 017314 128 G--CLGSVLDLAITHDN-R-SV-IAASSSNNLYVWDVNSG--RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200 (373)
Q Consensus 128 ~--~~~~v~~~~~~~~~-~-~l-~s~s~d~~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vw 200 (373)
- -.+.+ ++..++.. . .+ ++.-.++.+.++|-... +....-.-|..+|.++.+.+ ..+.++|....|.|..|
T Consensus 94 L~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyW 171 (558)
T KOG0882|consen 94 LVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYW 171 (558)
T ss_pred cccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccccceeEee
Confidence 1 11111 11122221 1 22 23345678999996543 34445566999999999987 46778888889999999
Q ss_pred EccC------CeeeeE----------EeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEec----------
Q 017314 201 DLHK------GYCVNT----------IIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA---------- 254 (373)
Q Consensus 201 d~~~------~~~~~~----------~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~---------- 254 (373)
.... +...-. ........++.|+|+|..+.+-+.|..|+++++++|++++.+..
T Consensus 172 s~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~k 251 (558)
T KOG0882|consen 172 SAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPK 251 (558)
T ss_pred cCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccc
Confidence 8763 111000 11223467899999999999988999999999999987655432
Q ss_pred ----------------------ccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecC-------------
Q 017314 255 ----------------------HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATG------------- 299 (373)
Q Consensus 255 ----------------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~------------- 299 (373)
+....-+.+.|+.++++|+-++-=| |+++++.+..++..+-...
T Consensus 252 s~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~ 330 (558)
T KOG0882|consen 252 SPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQGA 330 (558)
T ss_pred cccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhhh
Confidence 1222345678999999998876554 6788888776655441100
Q ss_pred ---Cee-----ecCeeeeEECCCCcEEEEEeCCCcEEEE
Q 017314 300 ---NRV-----ASNWSRSCISPDESYVAAGSADGSVYIW 330 (373)
Q Consensus 300 ---~~~-----~~~~~~~~~s~~~~~l~sgs~Dg~i~iw 330 (373)
+.. +..-..+.+.+|...++++-...+++++
T Consensus 331 ~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 331 QKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred hhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 000 0000012245677788888888888888
No 295
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.93 E-value=5.7e-08 Score=81.61 Aligned_cols=274 Identities=15% Similarity=0.262 Sum_probs=161.5
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCc-----eeeeccccc------------cceEEEEEcCCCC--EEEEE
Q 017314 88 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGS-----LSSTLYGCL------------GSVLDLAITHDNR--SVIAA 148 (373)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~s~ 148 (373)
...|+++.|...|.+|++|..-|.|.++.-+... ....+.+|. ..|..+.|..++. .++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 3568899999999999999999999999865432 122344443 2356666655543 57778
Q ss_pred eCCCcEEEEEcCCCeeEEEeec------C---CCcEEEEEEeeCCCCEEEEEe-CCCcEEEEEccCCeeeeEEeecCcee
Q 017314 149 SSSNNLYVWDVNSGRVRHTLTG------H---TDKVCAVDVSKISSRHVVSAA-YDRTLKVWDLHKGYCVNTIIFHSNCN 218 (373)
Q Consensus 149 s~d~~i~iwd~~~~~~~~~~~~------h---~~~v~~~~~~~~~~~~~~s~s-~D~~i~vwd~~~~~~~~~~~~~~~~~ 218 (373)
+.|++|++|.+........-+. | .+++++.. .-.+--++ .|..|..... .+..-.+...++
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~-----~l~lprls~hd~iiaa~p~----rvyaNaH~yhiN 176 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTK-----ELLLPRLSEHDEIIAAKPC----RVYANAHPYHIN 176 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHH-----HhhcccccccceEEEeccc----eeccccceeEee
Confidence 9999999998864321110000 0 11111100 00000001 1111111100 000011223478
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCe---eeEEEeccc----ccceEEEEEcCCCC-EEEEeeCCCeEEEEEccccc
Q 017314 219 ALAFSMDGQTIFSGHIDGNLRLWDIQTGK---LLSEVAAHS----LAAVTSISLSRSGN-IILTSGRDNLHNLFDIRSLE 290 (373)
Q Consensus 219 ~~~~~~~g~~l~sg~~dg~i~iwd~~~~~---~~~~~~~~~----~~~v~~~~~~~~~~-~l~s~~~d~~i~~~d~~~~~ 290 (373)
++++..|...++++ .|=.|.+|++.-.. .+-.+..|. ...|++..|+|... .+.-.+..|.|++-|+|...
T Consensus 177 SiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 177 SISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 99999998888776 46789999885422 122233332 13588889998654 55566778999999998533
Q ss_pred eeee----eeecC--------CeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccC-ceEEEEeccC------------C
Q 017314 291 VCGS----LRATG--------NRVASNWSRSCISPDESYVAAGSADGSVYIWSISK-ADIVRTLKEH------------T 345 (373)
Q Consensus 291 ~~~~----~~~~~--------~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~-~~~~~~l~~h------------~ 345 (373)
.+.. +.... ..+...++...|++.|+|+++-+-- +|+|||+.. ..++++..-| .
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEn 334 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEN 334 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhc
Confidence 2211 11011 1122344556789999999886644 799999875 3456665433 1
Q ss_pred ccE---EEEEEcCCCCcEEEEeCCCeEEEc
Q 017314 346 APV---LSCSWSGLGKPLASADKNGVVCVW 372 (373)
Q Consensus 346 ~~V---~~~~~s~~g~~l~s~s~dg~i~iW 372 (373)
..| ..+.||.|.+.+.+||-....-||
T Consensus 335 DaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 335 DAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred cceeeeEEEEecCCcccccccccccceeee
Confidence 223 578999999999988876655443
No 296
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=1.8e-06 Score=79.83 Aligned_cols=201 Identities=15% Similarity=0.101 Sum_probs=119.3
Q ss_pred cEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeC---CCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEE
Q 017314 153 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY---DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTI 229 (373)
Q Consensus 153 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~---D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l 229 (373)
.|.+-|........... .. ....-.|+|.....++..+. +..|.++|+.+++...............|+|||+.+
T Consensus 170 ~l~~~d~dg~~~~~~~~-~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 170 NIVLADYTLTYQKVIVK-GG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred eEEEECCCCCceeEEcc-CC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEE
Confidence 45555554433332323 23 66677888854433554333 356888899888654433333445567899999877
Q ss_pred E-EEeCC--CcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEee-CCC--eEEEEEccccceeeeeeecCCeee
Q 017314 230 F-SGHID--GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG-RDN--LHNLFDIRSLEVCGSLRATGNRVA 303 (373)
Q Consensus 230 ~-sg~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~--~i~~~d~~~~~~~~~~~~~~~~~~ 303 (373)
+ +.+.+ ..|.++|+.+++. ..+..+. .....-.|+|||+.|+-.+ ..+ .|.+.|+.+++.. .+...+..
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~-~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~-rlt~~g~~-- 322 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTL-TQITNYP-GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE-QVVFHGKN-- 322 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcE-EEcccCC-CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE-eCccCCCc--
Confidence 6 33333 4688889887763 3444332 2234567999998665544 333 4666677655432 22221111
Q ss_pred cCeeeeEECCCCcEEEEEeCC---------CcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCC
Q 017314 304 SNWSRSCISPDESYVAAGSAD---------GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN 366 (373)
Q Consensus 304 ~~~~~~~~s~~~~~l~sgs~D---------g~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~d 366 (373)
. ..++|||++|+-.+.. ..|++.|+.++.. ..|... +......|||||+.|+..+.+
T Consensus 323 ---~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 323 ---N-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred ---C-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 1 2689999988766543 3688888877764 334433 233368899999988766544
No 297
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.93 E-value=3.6e-09 Score=62.58 Aligned_cols=38 Identities=29% Similarity=0.596 Sum_probs=36.0
Q ss_pred cceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEe
Q 017314 79 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWD 116 (373)
Q Consensus 79 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd 116 (373)
++.+++.+|.+.|++++|+|++..|+||+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 36788999999999999999999999999999999997
No 298
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.93 E-value=2.6e-08 Score=86.31 Aligned_cols=157 Identities=19% Similarity=0.199 Sum_probs=103.0
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCe----eEEEeecCCCcEEEEEEeeCCCCEEE--EEeCCCcEEEEEccCCeeeeE
Q 017314 137 AITHDNRSVIAASSSNNLYVWDVNSGR----VRHTLTGHTDKVCAVDVSKISSRHVV--SAAYDRTLKVWDLHKGYCVNT 210 (373)
Q Consensus 137 ~~~~~~~~l~s~s~d~~i~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~--s~s~D~~i~vwd~~~~~~~~~ 210 (373)
..++.+++++.+..++...+++..... +......... -+++.+...+...++ ..+....+.+|...++.+...
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~-~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~ 147 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKR-PTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPI 147 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccC-cceeeeeeccceEEEEeecCCceeeeeecccccCcchh
Confidence 445666666666666665555554322 2222221111 122222222222222 344556667777666655544
Q ss_pred EeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccc
Q 017314 211 IIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE 290 (373)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~ 290 (373)
+-+-+.+..++++||+++|+++..|..||+-.....-.+..+...+..-|..+++-++ ..|+++|.|+++++||+++++
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCC
Confidence 4444568899999999999999999999998887766777776645578888988765 459999999999999999988
Q ss_pred eeeee
Q 017314 291 VCGSL 295 (373)
Q Consensus 291 ~~~~~ 295 (373)
...++
T Consensus 227 ~L~t~ 231 (390)
T KOG3914|consen 227 LLDTC 231 (390)
T ss_pred ccccc
Confidence 76554
No 299
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.93 E-value=6.4e-07 Score=73.93 Aligned_cols=231 Identities=13% Similarity=0.056 Sum_probs=143.0
Q ss_pred CCEEEEeeCCCcEEEEeCCCCceee-eccccccceEEEE-EcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCc--E
Q 017314 100 SARLISGGQDKSIKLWDTNTGSLSS-TLYGCLGSVLDLA-ITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDK--V 175 (373)
Q Consensus 100 ~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~v~~~~-~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~--v 175 (373)
..+|+.||.-|...+|...+.+... ....|...|+-+. ..-....+..++.|.++++.++..+.....+ |... +
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--h~~~~~~ 161 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--HNQNLTQ 161 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee--eccccce
Confidence 3589999999999999988665422 2222322222111 1111234677899999999998755432222 3333 6
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEEccCC--eeeeEEeec--CceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeE-
Q 017314 176 CAVDVSKISSRHVVSAAYDRTLKVWDLHKG--YCVNTIIFH--SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLS- 250 (373)
Q Consensus 176 ~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~--~~~~~~~~~--~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~- 250 (373)
..+++++ ++.+.++.+....|-.|.+... +..++.... ..--+.+|+.....+|++..||++.|||++......
T Consensus 162 ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 162 NSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 6777776 6788888888899999987543 233322222 224567888888899999999999999998754332
Q ss_pred ---EEecccccceEEEEEcCCCC--EEEEeeCCCeEEEEEccccceeeeeeecCCeee----cCeeeeEECCCCcEEEEE
Q 017314 251 ---EVAAHSLAAVTSISLSRSGN--IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVA----SNWSRSCISPDESYVAAG 321 (373)
Q Consensus 251 ---~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~l~sg 321 (373)
....|+.+.+..+.|++.|. +|+-.-.=+.+.+.|+|++...+.+........ ......+|+.++.-+.+.
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK 320 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence 22345568999999998665 344333345678999998876655543322210 111123455555555555
Q ss_pred eCCCcEEEEEccC
Q 017314 322 SADGSVYIWSISK 334 (373)
Q Consensus 322 s~Dg~i~iwd~~~ 334 (373)
+++. +.=|++.+
T Consensus 321 ~e~~-~ae~ni~s 332 (344)
T KOG4532|consen 321 NELQ-GAEYNILS 332 (344)
T ss_pred cchh-hheeeccc
Confidence 5442 44455443
No 300
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.92 E-value=1.3e-06 Score=87.92 Aligned_cols=271 Identities=15% Similarity=0.158 Sum_probs=162.8
Q ss_pred ccCcEEEEEEcCCCCEEEEeeCCCcEEEE----eCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 017314 87 HEGGCASILFEYNSARLISGGQDKSIKLW----DTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG 162 (373)
Q Consensus 87 h~~~v~~~~~~~~~~~l~s~s~D~~v~iw----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 162 (373)
..+.|.++.|-++...++.+..+|.|.+. |..+... ...-.....|.+++||||+..|+.++.++++.+-+ .+-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~f 151 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDF 151 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccc
Confidence 34678999999999999999999999999 5544322 22222356899999999999999999999888764 333
Q ss_pred eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCee--------------eeEEeecCceeEEEEccCCCE
Q 017314 163 RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC--------------VNTIIFHSNCNALAFSMDGQT 228 (373)
Q Consensus 163 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~--------------~~~~~~~~~~~~~~~~~~g~~ 228 (373)
.++....-+.+.. .....++.|+-+.=--+.-..|+. ...+........++|-.||.+
T Consensus 152 d~i~E~~l~~~~~--------~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~y 223 (928)
T PF04762_consen 152 DPISEVPLDSDDF--------GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEY 223 (928)
T ss_pred eEEEEeecCcccc--------CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcE
Confidence 4444333222111 111223322221110010000110 000111223567899999999
Q ss_pred EEEEeC---C---CcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeC---CCeEEEEEccccceeeeeeecC
Q 017314 229 IFSGHI---D---GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR---DNLHNLFDIRSLEVCGSLRATG 299 (373)
Q Consensus 229 l~sg~~---d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i~~~d~~~~~~~~~~~~~~ 299 (373)
+++.+- + ..||+|+-. |.+...-.. -.+--.+++|-|+|++||+... ...|.+|.- ++-..+.|....
T Consensus 224 FAVss~~~~~~~~R~iRVy~Re-G~L~stSE~-v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~ 300 (928)
T PF04762_consen 224 FAVSSVEPETGSRRVIRVYSRE-GELQSTSEP-VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRF 300 (928)
T ss_pred EEEEEEEcCCCceeEEEEECCC-ceEEecccc-CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCC
Confidence 997664 3 479999875 554433322 1234557899999999999865 334666652 333333443322
Q ss_pred CeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCce--EEEEeccC-CccEEEEEEcCCC-CcEEEEeCCCeEEE
Q 017314 300 NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD--IVRTLKEH-TAPVLSCSWSGLG-KPLASADKNGVVCV 371 (373)
Q Consensus 300 ~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~--~~~~l~~h-~~~V~~~~~s~~g-~~l~s~s~dg~i~i 371 (373)
..-......+.+++|+..||.--.|. |.+|-..+.. +-+.+.-. ...+..+.|+|.. ..|.....+|.+..
T Consensus 301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~ 375 (928)
T PF04762_consen 301 DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEI 375 (928)
T ss_pred CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEE
Confidence 11112234577899999999987666 9999988754 33344422 2344559999964 45666666566544
No 301
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.92 E-value=4e-08 Score=93.39 Aligned_cols=183 Identities=20% Similarity=0.294 Sum_probs=138.2
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEE
Q 017314 99 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAV 178 (373)
Q Consensus 99 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 178 (373)
++..++-|+....+..+|+.+.+......-..+.|.=+ ..+++.+++|...|+|.+-|+++.+.++++.+|++.+..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 45678888888888889998887765554434344433 3567899999999999999999999999999999999988
Q ss_pred EEeeCCCCEEEEEeC---------CCcEEEEEccCCeeeeEEeecCceeEEEEccC-CCEEEEEeCCCcEEEEECC---C
Q 017314 179 DVSKISSRHVVSAAY---------DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMD-GQTIFSGHIDGNLRLWDIQ---T 245 (373)
Q Consensus 179 ~~~~~~~~~~~s~s~---------D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-g~~l~sg~~dg~i~iwd~~---~ 245 (373)
++ .++.++|||. |.-|+|||++.-+.+.-+.++....-+.|+|. ...++.++..|...+-|.. +
T Consensus 224 Dv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCC
Confidence 76 4788999875 67789999997765554555555555667774 3457778888999998843 2
Q ss_pred Ce-eeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q 017314 246 GK-LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR 287 (373)
Q Consensus 246 ~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~ 287 (373)
.. .+..+... ...+..++++++++.++-+..++.+.+|.-+
T Consensus 301 P~~~~~~v~p~-~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 301 PPAGVKMVNPN-GSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CccceeEEccC-CCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 21 11222222 2459999999999999999999999999743
No 302
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.91 E-value=1.7e-08 Score=87.54 Aligned_cols=160 Identities=20% Similarity=0.332 Sum_probs=106.2
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEeCCCCce----eeeccccccceEEEEEcCCCCEEEE---EeCCCcEEEEEcCCCe
Q 017314 91 CASILFEYNSARLISGGQDKSIKLWDTNTGSL----SSTLYGCLGSVLDLAITHDNRSVIA---ASSSNNLYVWDVNSGR 163 (373)
Q Consensus 91 v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s---~s~d~~i~iwd~~~~~ 163 (373)
...+.+++++.+||.+..+....++++..... ...... ...-+++.|..+...... ++....+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34456677888888888887777777654432 111111 112233444444444333 3344556666665544
Q ss_pred eEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEee-cCc-eeEEEEccCCCEEEEEeCCCcEEEE
Q 017314 164 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-HSN-CNALAFSMDGQTIFSGHIDGNLRLW 241 (373)
Q Consensus 164 ~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~-~~~-~~~~~~~~~g~~l~sg~~dg~i~iw 241 (373)
+. -+.||-.-+..++++| ++.+|+++..|..||+-.......+..+.. |.. |..+++-+ +..|++||.|++|++|
T Consensus 144 ~~-~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 144 CE-PILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLW 220 (390)
T ss_pred cc-hhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEE
Confidence 33 4568999999999998 568999999999999977665544545443 444 66777765 4568999999999999
Q ss_pred ECCCCeeeEEEec
Q 017314 242 DIQTGKLLSEVAA 254 (373)
Q Consensus 242 d~~~~~~~~~~~~ 254 (373)
|+.+|+.+.++..
T Consensus 221 d~~sgk~L~t~dl 233 (390)
T KOG3914|consen 221 DITSGKLLDTCDL 233 (390)
T ss_pred ecccCCcccccch
Confidence 9999998866543
No 303
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=9.1e-10 Score=103.91 Aligned_cols=220 Identities=18% Similarity=0.229 Sum_probs=153.7
Q ss_pred eeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCC-cEEEEE
Q 017314 123 SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR-TLKVWD 201 (373)
Q Consensus 123 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~-~i~vwd 201 (373)
..+++.|....++++|+.+.+.|+.|+..|.|+++++.+|.......+|..+|+-+.-+...+..+.+.++.. -..+|+
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 3456678889999999999999999999999999999999999999999999998876664444455555554 457899
Q ss_pred ccC-CeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecc---cccceEEEEEcCCCCEEEEeeC
Q 017314 202 LHK-GYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH---SLAAVTSISLSRSGNIILTSGR 277 (373)
Q Consensus 202 ~~~-~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~ 277 (373)
+.+ +...+++ ....++.|+..-..-+.|+.-....+||+.++..+.++... ....-+...|+|+..+++-
T Consensus 1174 ~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln--- 1247 (1516)
T KOG1832|consen 1174 ASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN--- 1247 (1516)
T ss_pred cccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---
Confidence 864 2233332 23456777765444445555567899999998776653221 1123467789999887764
Q ss_pred CCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCC
Q 017314 278 DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLG 357 (373)
Q Consensus 278 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g 357 (373)
|| .+||+|..+.++.|........ -.|+|.|.-++..+ -|||+.+.++++....-. =..|.|+..|
T Consensus 1248 dG--vLWDvR~~~aIh~FD~ft~~~~-----G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNstG 1313 (1516)
T KOG1832|consen 1248 DG--VLWDVRIPEAIHRFDQFTDYGG-----GGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNSTG 1313 (1516)
T ss_pred Cc--eeeeeccHHHHhhhhhheeccc-----ccccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEeccCc
Confidence 33 3899998776666543332222 24799999988877 489999988876554322 2457788877
Q ss_pred CcEEE
Q 017314 358 KPLAS 362 (373)
Q Consensus 358 ~~l~s 362 (373)
..+..
T Consensus 1314 ~VmYa 1318 (1516)
T KOG1832|consen 1314 DVMYA 1318 (1516)
T ss_pred cchhh
Confidence 76543
No 304
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.89 E-value=1e-08 Score=83.88 Aligned_cols=184 Identities=19% Similarity=0.338 Sum_probs=107.7
Q ss_pred CCEEEEEeCCCcEEEEEccCCeeeeE------------EeecCce-eEEEEccCCCEEEEEeCCCcEEEEECCCCeee-E
Q 017314 185 SRHVVSAAYDRTLKVWDLHKGYCVNT------------IIFHSNC-NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL-S 250 (373)
Q Consensus 185 ~~~~~s~s~D~~i~vwd~~~~~~~~~------------~~~~~~~-~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~-~ 250 (373)
...|+++..++.+......++.+... +..+.++ .+-..+.-++.++++..||.+-+++.+.-..+ .
T Consensus 47 ~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~ 126 (319)
T KOG4714|consen 47 EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMS 126 (319)
T ss_pred hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhh
Confidence 44566666666666655544433221 1112211 12223344667899999999999998652111 1
Q ss_pred EEecccccceEEEEEcCCCCEEEEeeCC-----CeEEEEEccccceeeeeeecCCeeecCeeeeEECCC-CcEEEEEeCC
Q 017314 251 EVAAHSLAAVTSISLSRSGNIILTSGRD-----NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD-ESYVAAGSAD 324 (373)
Q Consensus 251 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~sgs~D 324 (373)
.+...+ ..-.+.++...++.+.+++.. +..+.|+++.. .++........ .....|-+|. ...+++|+.|
T Consensus 127 ~i~~~~-~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~---~t~~~~~~~~~-~v~~l~~hp~qq~~v~cgt~d 201 (319)
T KOG4714|consen 127 RIPSIH-SGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPI---KTLIPSKKALD-AVTALCSHPAQQHLVCCGTDD 201 (319)
T ss_pred hccccc-ccccccceeecccEEecCCcceEeeccceeeeccccc---ccccccccccc-cchhhhCCcccccEEEEecCC
Confidence 111111 122334444555655554322 12334544432 22221111110 1233556664 4577889999
Q ss_pred CcEEEEEccCceE-EEEeccCCccEEEEEEcCC-CCcEEEEeCCCeEEEcC
Q 017314 325 GSVYIWSISKADI-VRTLKEHTAPVLSCSWSGL-GKPLASADKNGVVCVWT 373 (373)
Q Consensus 325 g~i~iwd~~~~~~-~~~l~~h~~~V~~~~~s~~-g~~l~s~s~dg~i~iW~ 373 (373)
|.+-+||...... ...++.|+.+|+.+-|+|. +..|.+++.||.+.-|+
T Consensus 202 g~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 202 GIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred CeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 9999999988754 4557889999999999995 67999999999999885
No 305
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.89 E-value=2.3e-06 Score=76.17 Aligned_cols=145 Identities=19% Similarity=0.322 Sum_probs=113.5
Q ss_pred cCccCcEEEEEEcCCCCEEEEeeCCC-cEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe
Q 017314 85 NAHEGGCASILFEYNSARLISGGQDK-SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR 163 (373)
Q Consensus 85 ~~h~~~v~~~~~~~~~~~l~s~s~D~-~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 163 (373)
-+|.++|.=..+..++..++.|..|| .+-|+|..+++. +.+....+.|-++..+++|+.++.+.....+-+.|+.++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 36778888888888888999999999 899999988764 4455667889999999999999998888899999999998
Q ss_pred eEEEeecCCCcEEEEEEeeCCCCEEEEEeC----CCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEE
Q 017314 164 VRHTLTGHTDKVCAVDVSKISSRHVVSAAY----DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFS 231 (373)
Q Consensus 164 ~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~----D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s 231 (373)
+...-+..-+-|+.++|+| ++++++-+-. -..|+++|+..++....-.....-.+=+|.|||++|+-
T Consensus 435 v~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred eeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEE
Confidence 8766666667789999998 5778775543 46789999988765433222222234568899998864
No 306
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.86 E-value=9e-08 Score=91.09 Aligned_cols=180 Identities=18% Similarity=0.302 Sum_probs=131.1
Q ss_pred CCCEEEEEeCCCcEEEEEccCCeeeeEEeecC-ceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEE
Q 017314 184 SSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTS 262 (373)
Q Consensus 184 ~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 262 (373)
++..++-|+.-..+...|+++....+...... .+.-+. .+++++.+|...|+|-+-|.++.+.++++..|. +.+..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs-~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS-GSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccc-cceee
Confidence 34567778888888889998887666554443 344333 478899999999999999999999999999997 56654
Q ss_pred EEEcCCCCEEEEeeCC---------CeEEEEEccccceeeeeeecCCeeecCeeeeEECCC-CcEEEEEeCCCcEEEEEc
Q 017314 263 ISLSRSGNIILTSGRD---------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD-ESYVAAGSADGSVYIWSI 332 (373)
Q Consensus 263 ~~~~~~~~~l~s~~~d---------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~sgs~Dg~i~iwd~ 332 (373)
|+-.|+.|++||.. ..+++||+|..+.+.-+..+..+.. +-|.|. ...++.+|..|...+-|.
T Consensus 223 --fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~f-----lrf~Psl~t~~~V~S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 223 --FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQF-----LRFHPSLTTRLAVTSQSGQFQFVDT 295 (1118)
T ss_pred --eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchh-----hhhcccccceEEEEecccceeeccc
Confidence 55679999999754 4578999998776554444333311 224553 457888999999999883
Q ss_pred ---cCceE-EEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 333 ---SKADI-VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 333 ---~~~~~-~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
.+... +..+..-...+.++++|+.|+.||.|..+|.|.+|.
T Consensus 296 ~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 296 ATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 33211 222222334489999999999999999999999994
No 307
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=2e-09 Score=101.67 Aligned_cols=199 Identities=20% Similarity=0.285 Sum_probs=145.7
Q ss_pred eEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeC-CC-cEEEEE
Q 017314 81 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS-SN-NLYVWD 158 (373)
Q Consensus 81 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~-d~-~i~iwd 158 (373)
...|+.|....++++|+-+.+.|+.|+..|.|+++++.+|........|...|+-+.-+.||..+++.+. .. -..+|+
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 4567889999999999999999999999999999999999999999999999999999999987665443 33 578999
Q ss_pred cCC-CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeec-----CceeEEEEccCCCEEEEE
Q 017314 159 VNS-GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-----SNCNALAFSMDGQTIFSG 232 (373)
Q Consensus 159 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~-----~~~~~~~~~~~g~~l~sg 232 (373)
... +.+.++|.+ -.++.|+.... .-+.|..-....+||+.++..+.++... ..-++..|+|+..+++
T Consensus 1174 ~~s~~~~~Hsf~e----d~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl-- 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDE----DKAVKFSNSLQ-FRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL-- 1246 (1516)
T ss_pred cccccCccccccc----cceeehhhhHH-HHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--
Confidence 854 455666543 24566664322 2233333356789999998776664322 2247789999998886
Q ss_pred eCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeee
Q 017314 233 HIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR 296 (373)
Q Consensus 233 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~ 296 (373)
.||. +||++..+.++.+.... .--.=.|+|.|+.++..+. +||+|+....+..+
T Consensus 1247 -ndGv--LWDvR~~~aIh~FD~ft--~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1247 -NDGV--LWDVRIPEAIHRFDQFT--DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVP 1300 (1516)
T ss_pred -eCce--eeeeccHHHHhhhhhhe--ecccccccCCCceEEeech-----hhhhHHHHHHhcCc
Confidence 4553 89999887776654322 1112258899998887755 89999988766554
No 308
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.84 E-value=2.1e-06 Score=76.41 Aligned_cols=211 Identities=18% Similarity=0.199 Sum_probs=137.5
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCCceeeeccc-----cc---cceEEEE----Ec-CCCCEEEEEeCCCcEEEEEcCCCe
Q 017314 97 EYNSARLISGGQDKSIKLWDTNTGSLSSTLYG-----CL---GSVLDLA----IT-HDNRSVIAASSSNNLYVWDVNSGR 163 (373)
Q Consensus 97 ~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-----~~---~~v~~~~----~~-~~~~~l~s~s~d~~i~iwd~~~~~ 163 (373)
+.||++++= +.-|.|.++|.++.++.+.--+ .. ..+.-.. |+ .+|.+++..|.. ...|.+...+-
T Consensus 275 nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG-kaFi~~~~~~~ 352 (668)
T COG4946 275 NSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG-KAFIMRPWDGY 352 (668)
T ss_pred CCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC-cEEEECCCCCe
Confidence 456766553 5567899999887654221000 00 0010001 22 256676666654 45565555444
Q ss_pred eEEEeecCCCcEEEEEEeeCCCCEEEEEeCCC-cEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEE
Q 017314 164 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR-TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWD 242 (373)
Q Consensus 164 ~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd 242 (373)
.+. .+|...|.-..+.. .++-++-|..|| .+-++|..++...+....-..+.++..+|+|++++.+.....|-+.|
T Consensus 353 ~iq--v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 353 SIQ--VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred eEE--cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 333 35677777666554 345678888998 89999999987666555557799999999999999999888999999
Q ss_pred CCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCC----CeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEE
Q 017314 243 IQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD----NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 318 (373)
Q Consensus 243 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 318 (373)
+.++.. +.+.....+-|+.+.|+|+++++|-+=-+ ..|+++|+...+....-... ...++ -+|.||++||
T Consensus 430 idngnv-~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t----a~Dfs-PaFD~d~ryL 503 (668)
T COG4946 430 IDNGNV-RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT----AYDFS-PAFDPDGRYL 503 (668)
T ss_pred ecCCCe-eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCc----ccccC-cccCCCCcEE
Confidence 999875 34444444679999999999999876444 46899999876543222111 11222 2577888765
No 309
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.84 E-value=2e-06 Score=79.50 Aligned_cols=259 Identities=12% Similarity=0.085 Sum_probs=152.2
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCceeeeccccc---------c-ce-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEE
Q 017314 99 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCL---------G-SV-LDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT 167 (373)
Q Consensus 99 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---------~-~v-~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 167 (373)
.+..++.++.++.|.-+|..+|+.+=...-.. . .+ ..+. -++..++.++.++.+..+|..+|+.+..
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVT--VAGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccE--EECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 36688888889999999999887653322111 0 00 0011 1356778888999999999999988776
Q ss_pred eecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEE--EEcc--CCCEEEEEeCCCcEEEEEC
Q 017314 168 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNAL--AFSM--DGQTIFSGHIDGNLRLWDI 243 (373)
Q Consensus 168 ~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~--~g~~l~sg~~dg~i~iwd~ 243 (373)
............+ .+..++.+..++.+.-+|..+|+.+-..........+ .-+| .+..++.++.+|.+..+|.
T Consensus 146 ~~~~~~~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 146 TKVAGEALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ccCCCceecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEc
Confidence 6543221111111 2346777888999999999999877665432111000 0111 2345777888999999999
Q ss_pred CCCeeeEEEeccccc------ceEEEEEcC--CCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCC
Q 017314 244 QTGKLLSEVAAHSLA------AVTSISLSR--SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE 315 (373)
Q Consensus 244 ~~~~~~~~~~~~~~~------~v~~~~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 315 (373)
.+|+.+......... ....+..+| .+..++.++.++.+..+|..+++..-+..... . ... ...+
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~----~~~--~~~~ 294 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS--V----NDF--AVDG 294 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC--c----cCc--EEEC
Confidence 999876654321100 011111122 24566677788999999988876543322110 0 001 1246
Q ss_pred cEEEEEeCCCcEEEEEccCceEEEEeccCCc-cEEEEEEcCCCCcEEEEeCCCeEEEc
Q 017314 316 SYVAAGSADGSVYIWSISKADIVRTLKEHTA-PVLSCSWSGLGKPLASADKNGVVCVW 372 (373)
Q Consensus 316 ~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~-~V~~~~~s~~g~~l~s~s~dg~i~iW 372 (373)
..|..++.||.+..+|..+++.+-....-.. ...+... .+.+|+.++.||.|...
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~l 350 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWI 350 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEE
Confidence 6777788899999999998876533221111 1111111 24566777778877653
No 310
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.83 E-value=4.8e-06 Score=78.29 Aligned_cols=164 Identities=17% Similarity=0.209 Sum_probs=110.9
Q ss_pred CCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeC--------------------------------------
Q 017314 193 YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI-------------------------------------- 234 (373)
Q Consensus 193 ~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~-------------------------------------- 234 (373)
..+.+.+.|..+.+...++........+.++|+|+++++.+.
T Consensus 213 y~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~ 292 (635)
T PRK02888 213 YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKT 292 (635)
T ss_pred eeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEE
Confidence 345667778777666667666666667888899988877651
Q ss_pred --CCcEEEEECCC-----CeeeEEEecccccceEEEEEcCCCCEEEEee-CCCeEEEEEccccce------------eee
Q 017314 235 --DGNLRLWDIQT-----GKLLSEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEV------------CGS 294 (373)
Q Consensus 235 --dg~i~iwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~~~d~~~~~~------------~~~ 294 (373)
++.|.+.|.++ .+.+..+... .....+.++|||+++++++ .++++.++|+.+.+. ..+
T Consensus 293 V~gn~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 293 IGGSKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred ECCCEEEEEECCccccCCcceEEEEECC--CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 24577777776 3444444443 4577899999999877765 588999999987552 222
Q ss_pred eeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccC----------ceEEEEeccCCcc-----EEEEEEcCCCCc
Q 017314 295 LRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK----------ADIVRTLKEHTAP-----VLSCSWSGLGKP 359 (373)
Q Consensus 295 ~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~----------~~~~~~l~~h~~~-----V~~~~~s~~g~~ 359 (373)
...-..+. ..+|+++|....|-.-|..|-.|++.+ ...+..+.-|..+ ...=.-.|||+|
T Consensus 371 vevGlGPL-----HTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~ 445 (635)
T PRK02888 371 PELGLGPL-----HTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKW 445 (635)
T ss_pred eccCCCcc-----eEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCE
Confidence 22211121 246889998888889999999999976 3445555444332 222234789999
Q ss_pred EEEE
Q 017314 360 LASA 363 (373)
Q Consensus 360 l~s~ 363 (373)
|++.
T Consensus 446 l~~~ 449 (635)
T PRK02888 446 LVSL 449 (635)
T ss_pred EEEc
Confidence 9886
No 311
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.81 E-value=3.4e-05 Score=78.05 Aligned_cols=281 Identities=14% Similarity=0.170 Sum_probs=166.1
Q ss_pred ccCcEEEEEEcCCCCEEEEeeC---C---CcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeC---CCcEEEE
Q 017314 87 HEGGCASILFEYNSARLISGGQ---D---KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS---SNNLYVW 157 (373)
Q Consensus 87 h~~~v~~~~~~~~~~~l~s~s~---D---~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~---d~~i~iw 157 (373)
+...-..++|-.||.++|..+. . +.+|||+-+ |.+..+...-.+--.+++|.|.|+++++... ...|..|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 5566778999999999998875 2 579999976 6554444333444456899999999888765 3456666
Q ss_pred EcCCC---eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCe--eeeEEeecC--ceeEEEEccC-CCEE
Q 017314 158 DVNSG---RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY--CVNTIIFHS--NCNALAFSMD-GQTI 229 (373)
Q Consensus 158 d~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~--~~~~~~~~~--~~~~~~~~~~-g~~l 229 (373)
.-+.- +....+......|..+.|+. ++..|+..-.|. |.+|-..+.. ..+.+.+.. ....+.|+|. ...|
T Consensus 287 ErNGLrhgeF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L 364 (928)
T PF04762_consen 287 ERNGLRHGEFTLRFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRL 364 (928)
T ss_pred ecCCcEeeeEecCCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEE
Confidence 64332 21112223456789999987 566676655554 9999876653 233333332 2455889984 4456
Q ss_pred EEEeCCCcEEEEECC----CC--------eeeEEEec----------------------ccccceEEEEEcCCCCEEEEe
Q 017314 230 FSGHIDGNLRLWDIQ----TG--------KLLSEVAA----------------------HSLAAVTSISLSRSGNIILTS 275 (373)
Q Consensus 230 ~sg~~dg~i~iwd~~----~~--------~~~~~~~~----------------------~~~~~v~~~~~~~~~~~l~s~ 275 (373)
...+.+|.+..+++. .+ ..+..+.+ .-...|.+++|++++..+++-
T Consensus 365 ~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl 444 (928)
T PF04762_consen 365 HVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVL 444 (928)
T ss_pred EEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEE
Confidence 666666766554431 11 01111111 112568999999999889999
Q ss_pred eCCCeEEEEEcccccee--------eeeeec------CCeeecCeeeeEECCCCcEEEEEeC---CCcEEEEEccCce--
Q 017314 276 GRDNLHNLFDIRSLEVC--------GSLRAT------GNRVASNWSRSCISPDESYVAAGSA---DGSVYIWSISKAD-- 336 (373)
Q Consensus 276 ~~d~~i~~~d~~~~~~~--------~~~~~~------~~~~~~~~~~~~~s~~~~~l~sgs~---Dg~i~iwd~~~~~-- 336 (373)
..|+.+.+|........ ..+... ...........++..+..+++.... -..+.++++...+
T Consensus 445 ~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 524 (928)
T PF04762_consen 445 TSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENS 524 (928)
T ss_pred ECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCc
Confidence 99999999885432111 111110 0000111222344444455554444 3678888874332
Q ss_pred -EEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEE
Q 017314 337 -IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVC 370 (373)
Q Consensus 337 -~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~ 370 (373)
.+.....-.+.+..+...++...++.-..||.+.
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~ 559 (928)
T PF04762_consen 525 ASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVF 559 (928)
T ss_pred eeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEE
Confidence 2333333455666666666655456666677765
No 312
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.73 E-value=9.9e-05 Score=65.76 Aligned_cols=271 Identities=19% Similarity=0.157 Sum_probs=126.8
Q ss_pred EEcCCCCEEEEee-CCC--cEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecC
Q 017314 95 LFEYNSARLISGG-QDK--SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGH 171 (373)
Q Consensus 95 ~~~~~~~~l~s~s-~D~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 171 (373)
+|..||++|+-+| .|+ .+.+-|+.+++..+...+-........++++++.++-...+..++-.|+.+.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 5678887665555 455 5666688888766554432222224556788888877777788999999998766666655
Q ss_pred CCcEEEEEEeeC-CCCEEEEEe---CC-------------------CcEEEEEccCCeeeeEEeecCceeEEEEccCCCE
Q 017314 172 TDKVCAVDVSKI-SSRHVVSAA---YD-------------------RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQT 228 (373)
Q Consensus 172 ~~~v~~~~~~~~-~~~~~~s~s---~D-------------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~ 228 (373)
.+.+-...+... +...++-.- .| ..|.--|+.+|.....+.......-+.|+|....
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~ 201 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPT 201 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCC
Confidence 555543444322 233332111 11 1233446666655444444445677889996665
Q ss_pred EEEEeC----CCc-EEEEECCC-CeeeEEEeccc-ccceEEEEEcCCCCEEEE-----eeCCCeEEEEEccccceeeeee
Q 017314 229 IFSGHI----DGN-LRLWDIQT-GKLLSEVAAHS-LAAVTSISLSRSGNIILT-----SGRDNLHNLFDIRSLEVCGSLR 296 (373)
Q Consensus 229 l~sg~~----dg~-i~iwd~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s-----~~~d~~i~~~d~~~~~~~~~~~ 296 (373)
+++=+. |.. -|||-+++ +.....+..+. ...+.-=-|.|||..|.- ++.+..+.-+|+.+.+......
T Consensus 202 li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~ 281 (386)
T PF14583_consen 202 LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME 281 (386)
T ss_dssp EEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE
T ss_pred EEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe
Confidence 555332 332 36675543 33333333222 123444568899886543 2334456667777654322111
Q ss_pred ecCCeeecCeeeeEECCCCcEEEEEeCCC----------------cEEEEEccCceEEEEeccCC----------c-cEE
Q 017314 297 ATGNRVASNWSRSCISPDESYVAAGSADG----------------SVYIWSISKADIVRTLKEHT----------A-PVL 349 (373)
Q Consensus 297 ~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg----------------~i~iwd~~~~~~~~~l~~h~----------~-~V~ 349 (373)
.. . ..-.-.++||++++-=+.|. .|+++++..+.... +..|. . .=-
T Consensus 282 ~p--~----~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hP 354 (386)
T PF14583_consen 282 MP--W----CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDGDRQVTHP 354 (386)
T ss_dssp E---S----EEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEE-EEE-------BTTBSSTT--
T ss_pred CC--c----eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee-eeeccCcceeecCCCccCCC
Confidence 11 0 11123578999987633331 56778887765432 21221 1 114
Q ss_pred EEEEcCCCCcEEEE-eCCCeEEEc
Q 017314 350 SCSWSGLGKPLASA-DKNGVVCVW 372 (373)
Q Consensus 350 ~~~~s~~g~~l~s~-s~dg~i~iW 372 (373)
...|||||++++.. ...|...||
T Consensus 355 hp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 355 HPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp --EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CCccCCCCCEEEEECCCCCCccEE
Confidence 67999999977555 456766554
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.72 E-value=8.9e-06 Score=70.12 Aligned_cols=187 Identities=18% Similarity=0.283 Sum_probs=120.9
Q ss_pred eEEecCccCcEEEEEEcCCCCEEEEeeCC-----CcEEEEeCC-CCceeeeccccccceEEEEEcCCCCEEEEEe-----
Q 017314 81 KHKINAHEGGCASILFEYNSARLISGGQD-----KSIKLWDTN-TGSLSSTLYGCLGSVLDLAITHDNRSVIAAS----- 149 (373)
Q Consensus 81 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D-----~~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s----- 149 (373)
-+.|.+| ..||+||++|++.-.| |.|-|||.. +...+..+..|--....+.+.||+..|+.+-
T Consensus 49 gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~T 122 (305)
T PF07433_consen 49 GRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIET 122 (305)
T ss_pred CCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCcc
Confidence 4456777 5899999999987654 789999998 5566777877777778899999998777652
Q ss_pred -------------CCCcEEEEEcCCCeeEEE--e--ecCCCcEEEEEEeeCCCCEEEEEeCCCc-------EEEEEccCC
Q 017314 150 -------------SSNNLYVWDVNSGRVRHT--L--TGHTDKVCAVDVSKISSRHVVSAAYDRT-------LKVWDLHKG 205 (373)
Q Consensus 150 -------------~d~~i~iwd~~~~~~~~~--~--~~h~~~v~~~~~~~~~~~~~~s~s~D~~-------i~vwd~~~~ 205 (373)
++-++-.-|..+|+.+.. + .-|...+.-+++.. ++..++..-+.+. +-+++ .+
T Consensus 123 hpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~--~g 199 (305)
T PF07433_consen 123 HPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHR--RG 199 (305)
T ss_pred CcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEc--CC
Confidence 233445556666765544 3 23556666666654 2333332222221 11221 22
Q ss_pred eeeeEEe--------ecCceeEEEEccCCCEEEE-EeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEee
Q 017314 206 YCVNTII--------FHSNCNALAFSMDGQTIFS-GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG 276 (373)
Q Consensus 206 ~~~~~~~--------~~~~~~~~~~~~~g~~l~s-g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 276 (373)
..+..+. ...-+-+++++++|..+++ +=.-+.+.+||..+++.+..... ..++.++-.+++ ++++.+
T Consensus 200 ~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l---~D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 200 GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL---PDACGVAPTDDG-FLVSSG 275 (305)
T ss_pred CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc---CceeeeeecCCc-eEEeCC
Confidence 2222221 1234678999999988765 44677899999999998776544 356777777776 777776
Q ss_pred CCCe
Q 017314 277 RDNL 280 (373)
Q Consensus 277 ~d~~ 280 (373)
....
T Consensus 276 ~G~~ 279 (305)
T PF07433_consen 276 QGQL 279 (305)
T ss_pred CccE
Confidence 6553
No 314
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.68 E-value=4.4e-05 Score=64.13 Aligned_cols=222 Identities=16% Similarity=0.167 Sum_probs=124.1
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCC--eeEEEeecCCCc---EEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeE
Q 017314 136 LAITHDNRSVIAASSSNNLYVWDVNSG--RVRHTLTGHTDK---VCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT 210 (373)
Q Consensus 136 ~~~~~~~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~h~~~---v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~ 210 (373)
++.+.||+.| +.-.|..|-|-..++. ..+......+++ =+.++|+| +...++.+...|+|+++|+....+. .
T Consensus 3 ~~~~~~Gk~l-Ai~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf-~ 79 (282)
T PF15492_consen 3 LALSSDGKLL-AILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELF-V 79 (282)
T ss_pred eeecCCCcEE-EEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeE-E
Confidence 3455666544 4456666665544332 223333334433 25688987 6778999999999999998754322 2
Q ss_pred Eeec--------CceeEEEEccC------CCEEEEEeCCCcEEEEECCC-----CeeeEE--EecccccceEEEEEcCCC
Q 017314 211 IIFH--------SNCNALAFSMD------GQTIFSGHIDGNLRLWDIQT-----GKLLSE--VAAHSLAAVTSISLSRSG 269 (373)
Q Consensus 211 ~~~~--------~~~~~~~~~~~------g~~l~sg~~dg~i~iwd~~~-----~~~~~~--~~~~~~~~v~~~~~~~~~ 269 (373)
+... ..+..+.|-+- ...|+.-..+|.++-|-+.. .+..+. +..|....|+++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 2111 12334444331 22466677788887776532 222222 233444689999999999
Q ss_pred CEEEEeeCCCeEE-EEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCC------cEEEEEccCceEEEEec
Q 017314 270 NIILTSGRDNLHN-LFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG------SVYIWSISKADIVRTLK 342 (373)
Q Consensus 270 ~~l~s~~~d~~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg------~i~iwd~~~~~~~~~l~ 342 (373)
++|+.+|....-. ... +. ..-...|..+.=+|....+ +...|+ +-.+|.+.+.+......
T Consensus 160 ~LLlVgG~~~~~~~~s~-----------a~-~~GLtaWRiL~~~Pyyk~v-~~~~~~~~~~~~~~~~~~~~~~~~fs~~~ 226 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSK-----------AS-SCGLTAWRILSDSPYYKQV-TSSEDDITASSKRRGLLRIPSFKFFSRQG 226 (282)
T ss_pred CEEEEeccCCCCCcccc-----------cc-ccCceEEEEcCCCCcEEEc-cccCccccccccccceeeccceeeeeccc
Confidence 9888876543310 000 00 0001122222112332222 222232 12455554433332222
Q ss_pred cCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 343 EHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 343 ~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
.....|..+..||||+.||+...+|.|.+|+
T Consensus 227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred cCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence 3456799999999999999999999999995
No 315
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.68 E-value=0.00011 Score=63.57 Aligned_cols=229 Identities=16% Similarity=0.176 Sum_probs=137.6
Q ss_pred eEEEEEcCCC-CEEEEEeCCC-cEEEEEcCCCeeEEEeecCCCcEE-E-EEEeeCCCCEEEEEe-----CCCcEEEEEcc
Q 017314 133 VLDLAITHDN-RSVIAASSSN-NLYVWDVNSGRVRHTLTGHTDKVC-A-VDVSKISSRHVVSAA-----YDRTLKVWDLH 203 (373)
Q Consensus 133 v~~~~~~~~~-~~l~s~s~d~-~i~iwd~~~~~~~~~~~~h~~~v~-~-~~~~~~~~~~~~s~s-----~D~~i~vwd~~ 203 (373)
...++.+|.. ..++.+-.-| ...+||..+++....+....+.-. . -.|++ ++++|++.- ..|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECc
Confidence 3456777844 4455555555 578899999987766654333321 1 23665 677787653 35889999998
Q ss_pred -CCeeeeEEeecC-ceeEEEEccCCCEEEEEe------------------CCCcEEEEECCCCeeeEEEec---ccccce
Q 017314 204 -KGYCVNTIIFHS-NCNALAFSMDGQTIFSGH------------------IDGNLRLWDIQTGKLLSEVAA---HSLAAV 260 (373)
Q Consensus 204 -~~~~~~~~~~~~-~~~~~~~~~~g~~l~sg~------------------~dg~i~iwd~~~~~~~~~~~~---~~~~~v 260 (373)
.-..+.++..+. ..-.+.+.|||..|+.+- ++-++-..|..+|+++..... ++..++
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 334444444332 234577889997776542 234566678888888776432 233679
Q ss_pred EEEEEcCCCCEEEEeeCCCe-------EEEEEccccceeeeeeecC---CeeecCeeeeEECCCCcEEEEEe-CCCcEEE
Q 017314 261 TSISLSRSGNIILTSGRDNL-------HNLFDIRSLEVCGSLRATG---NRVASNWSRSCISPDESYVAAGS-ADGSVYI 329 (373)
Q Consensus 261 ~~~~~~~~~~~l~s~~~d~~-------i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~l~sgs-~Dg~i~i 329 (373)
.-++++++|..++..-..+- +-+++. .+....+.... .....-...+++++++.+++..| ..+.+.+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 99999999988777644432 222222 11111111110 01111123478899998886655 5789999
Q ss_pred EEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCC
Q 017314 330 WSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNG 367 (373)
Q Consensus 330 wd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg 367 (373)
||..+++.+....-. .+-.++-.+++ +++|.+.-.
T Consensus 244 ~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 244 WDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred EECCCCCEeeccccC--ceeeeeecCCc-eEEeCCCcc
Confidence 999999987765322 24455555555 666665544
No 316
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.60 E-value=6.1e-06 Score=77.62 Aligned_cols=178 Identities=12% Similarity=0.055 Sum_probs=115.8
Q ss_pred EEEcCCCCEEEEee-CCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCC----CcEEEEEcCCCeeEEEe
Q 017314 94 ILFEYNSARLISGG-QDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS----NNLYVWDVNSGRVRHTL 168 (373)
Q Consensus 94 ~~~~~~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~ 168 (373)
+=+++||+.+...+ ..+.+.+.|.++.+...++.-. +....++++++|+++++.+.+ .++..-+..+..
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d----- 271 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD----- 271 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCc-----
Confidence 34566776654433 3466777888876665544322 233567899999998887643 233333322211
Q ss_pred ecCCCcEEEEEEeeC-------CCCEEEEEeCCCcEEEEEccC-----CeeeeEEeecCceeEEEEccCCCEEEEE-eCC
Q 017314 169 TGHTDKVCAVDVSKI-------SSRHVVSAAYDRTLKVWDLHK-----GYCVNTIIFHSNCNALAFSMDGQTIFSG-HID 235 (373)
Q Consensus 169 ~~h~~~v~~~~~~~~-------~~~~~~s~s~D~~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~g~~l~sg-~~d 235 (373)
..+.|+.. ++++... .+++|.+.|..+ ...+..+......-.+.++|||++++++ ..+
T Consensus 272 -------~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS 342 (635)
T PRK02888 272 -------WVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLS 342 (635)
T ss_pred -------eEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCC
Confidence 12222221 2444433 367899999988 3566677777778889999999998865 458
Q ss_pred CcEEEEECCCCee------------eEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q 017314 236 GNLRLWDIQTGKL------------LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS 288 (373)
Q Consensus 236 g~i~iwd~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~ 288 (373)
.+|.++|+.+.+. +.+.... ......+|+++|+...|---|..+..|++..
T Consensus 343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG--lGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG--LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CcEEEEEChhhhhhhhccCCccceEEEeeccC--CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 9999999987542 2333222 2344578899999888888999999999875
No 317
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=1.5e-05 Score=75.11 Aligned_cols=238 Identities=13% Similarity=0.064 Sum_probs=157.0
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCC------------CEEEEEeCCCcEEEEE
Q 017314 91 CASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDN------------RSVIAASSSNNLYVWD 158 (373)
Q Consensus 91 v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~s~s~d~~i~iwd 158 (373)
-.++.|++.| +||-|+ -..|.+-|..+-+.+.++..|...|+.+.|.|-. -.|+++.-.|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 4567788765 555555 4578888999989999999999999999987531 1355666678999999
Q ss_pred cCCCeeEEEeecCCCcEEEEEEeeCC--C-CEEEEEeCCCcEEEEEccCCeeeeEEeecCce-eEEEEcc-CCCEEEEEe
Q 017314 159 VNSGRVRHTLTGHTDKVCAVDVSKIS--S-RHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC-NALAFSM-DGQTIFSGH 233 (373)
Q Consensus 159 ~~~~~~~~~~~~h~~~v~~~~~~~~~--~-~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~-~g~~l~sg~ 233 (373)
...+..+..+..|.+++..++|-+.. . ..++.-..-.++.+|+..+|..+-.......+ .++.+.| |.+.+..-+
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence 99998888999999999888877642 3 45666667789999999999877666554443 4577777 555555445
Q ss_pred CCCcEEEEECCC-------CeeeEEEecccc-----------cc-------------eEEEEEcCCCCEEEEeeCCCeEE
Q 017314 234 IDGNLRLWDIQT-------GKLLSEVAAHSL-----------AA-------------VTSISLSRSGNIILTSGRDNLHN 282 (373)
Q Consensus 234 ~dg~i~iwd~~~-------~~~~~~~~~~~~-----------~~-------------v~~~~~~~~~~~l~s~~~d~~i~ 282 (373)
..|.+-+-+.-. ++..+--..|+. .. ...++|+|.-+.++-....+.+.
T Consensus 176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prell 255 (1062)
T KOG1912|consen 176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELL 255 (1062)
T ss_pred cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceE
Confidence 556655554321 222221111111 00 11246677655444455666788
Q ss_pred EEEccccceeeeeeecCCeeecCeeeeEECC--CCcEEEEEeCCCcEEEEEccC
Q 017314 283 LFDIRSLEVCGSLRATGNRVASNWSRSCISP--DESYVAAGSADGSVYIWSISK 334 (373)
Q Consensus 283 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~sgs~Dg~i~iwd~~~ 334 (373)
++|+.-...+.......+... + +.+-| ....|.++-.||.+.||-.+.
T Consensus 256 v~dle~~~~l~vvpier~~ak--f--v~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 256 VFDLEYECCLAVVPIERGGAK--F--VDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEcchhhceeEEEEeccCCcc--e--eEeccCCCcceEEEEecCCeEEEEEeec
Confidence 999887666655544333221 1 22334 445788999999999997654
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=8.3e-06 Score=77.15 Aligned_cols=185 Identities=18% Similarity=0.220 Sum_probs=124.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEE
Q 017314 132 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI 211 (373)
Q Consensus 132 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~ 211 (373)
.+.+++++ ++.++.|+-+|.|++.+.... + .+...|+.. ..++.+++|||.||+|.|-.+-+.....++
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc-------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 34444543 467888999999999886543 2 333334333 236889999999999999998888888888
Q ss_pred eecCceeEEEEccC-----CCEEEEEeCCCcEEEEECCCCeeeE--EEecccccceEEEEEcCCCCEEEEeeCCCeEEEE
Q 017314 212 IFHSNCNALAFSMD-----GQTIFSGHIDGNLRLWDIQTGKLLS--EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF 284 (373)
Q Consensus 212 ~~~~~~~~~~~~~~-----g~~l~sg~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~ 284 (373)
.++..+.+++++|+ .+.+++|+.-| +-++.-+-..... .+.. ..++|.+++|. |+++|=++.+| +++|
T Consensus 110 df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~-~eG~I~~i~W~--g~lIAWand~G-v~vy 184 (846)
T KOG2066|consen 110 DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE-GEGPIHSIKWR--GNLIAWANDDG-VKVY 184 (846)
T ss_pred ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec-CccceEEEEec--CcEEEEecCCC-cEEE
Confidence 88899999999998 46788999888 7666533211111 1222 23789999985 67888776665 7899
Q ss_pred EccccceeeeeeecCCeeecC-ee-eeEECCCCcEEEEEeCCCcEEEEEccC
Q 017314 285 DIRSLEVCGSLRATGNRVASN-WS-RSCISPDESYVAAGSADGSVYIWSISK 334 (373)
Q Consensus 285 d~~~~~~~~~~~~~~~~~~~~-~~-~~~~s~~~~~l~sgs~Dg~i~iwd~~~ 334 (373)
|......+..+......+... +. ..++. +...|+.|=.| +|+|..+..
T Consensus 185 d~~~~~~l~~i~~p~~~~R~e~fpphl~W~-~~~~LVIGW~d-~v~i~~I~~ 234 (846)
T KOG2066|consen 185 DTPTRQRLTNIPPPSQSVRPELFPPHLHWQ-DEDRLVIGWGD-SVKICSIKK 234 (846)
T ss_pred eccccceeeccCCCCCCCCcccCCCceEec-CCCeEEEecCC-eEEEEEEec
Confidence 998877776665443222211 11 12222 45566666655 688888873
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.53 E-value=5e-05 Score=75.24 Aligned_cols=235 Identities=14% Similarity=0.140 Sum_probs=137.9
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEE
Q 017314 88 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT 167 (373)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 167 (373)
.+.|.++.|..+...++.+..+|.|.+-|.++.... ..-...+.|.+.+|+||+..++..+..+++.+-+- +-.++..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAE 145 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhc
Confidence 368999999999999999999999999998876432 22234567899999999999999999888876432 1111111
Q ss_pred eecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCe-----------eeeEEeecCceeEEEEccCCCEEEEE----
Q 017314 168 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-----------CVNTIIFHSNCNALAFSMDGQTIFSG---- 232 (373)
Q Consensus 168 ~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~-----------~~~~~~~~~~~~~~~~~~~g~~l~sg---- 232 (373)
-.-|.+. . .....++.++-+.=.-+--..|+ .......+..-..++|--||.++++.
T Consensus 146 ~~L~~d~------~--~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~ 217 (1265)
T KOG1920|consen 146 KPLDADD------E--RKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVES 217 (1265)
T ss_pred ccccccc------c--cccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEec
Confidence 1101100 0 01112333322211111000110 00111122334578999999998863
Q ss_pred eCC-CcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEe---eCCCeEEEEEccccceeeeeeecCCeeecCeee
Q 017314 233 HID-GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTS---GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSR 308 (373)
Q Consensus 233 ~~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~---~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 308 (373)
..+ ..|++||.. |.+ ..........-.+++|-|.|..+++- +.|+.|.+|.-... ..+.+......-...+..
T Consensus 218 ~~~~RkirV~drE-g~L-ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL-~hg~f~l~~p~de~~ve~ 294 (1265)
T KOG1920|consen 218 ETGTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL-RHGEFVLPFPLDEKEVEE 294 (1265)
T ss_pred cCCceeEEEeccc-chh-hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc-cccccccCCcccccchhe
Confidence 224 789999987 433 22222223456789999999999875 34567888874322 222222111111111345
Q ss_pred eEECCCCcEEEE---EeCCCcEEEEEccCc
Q 017314 309 SCISPDESYVAA---GSADGSVYIWSISKA 335 (373)
Q Consensus 309 ~~~s~~~~~l~s---gs~Dg~i~iwd~~~~ 335 (373)
++++.++..||. ......|++|-+.+.
T Consensus 295 L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 295 LAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeecCCCCceeeeecccccceEEEEEecCe
Confidence 778888988887 455556999988764
No 320
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=0.00062 Score=62.53 Aligned_cols=250 Identities=18% Similarity=0.216 Sum_probs=156.1
Q ss_pred EEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEE
Q 017314 112 IKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVS 190 (373)
Q Consensus 112 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s 190 (373)
+.+++..+......+..+. ....+.+.+++..++... ....+..-+............-...-..+++++...+..++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence 5555554444333332222 345567888886554433 22345555544222221111111222355666655656777
Q ss_pred EeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeC---CCcEEEEECCCCeeeEEEecccccceEEEEEcC
Q 017314 191 AAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI---DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR 267 (373)
Q Consensus 191 ~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 267 (373)
...+..|.+.|..................++++|++..++.+.. ++++.+.|..+++.+....... .+ ..++++|
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p 169 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDP 169 (381)
T ss_pred cCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECC
Confidence 77789999999888777777766667788999999988887655 7899999999998888755443 23 8899999
Q ss_pred CCCEEEEe-eCCCeEEEEEccccceee-eeeecCCeeecCeeeeEECCCCcEEEEEeC---CCcEEEEEccCceEEEE-e
Q 017314 268 SGNIILTS-GRDNLHNLFDIRSLEVCG-SLRATGNRVASNWSRSCISPDESYVAAGSA---DGSVYIWSISKADIVRT-L 341 (373)
Q Consensus 268 ~~~~l~s~-~~d~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~---Dg~i~iwd~~~~~~~~~-l 341 (373)
+|+.+..+ ..++.+.++|........ .... .......-....++|+|.++...-. ++.+...|..++..... +
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~-~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~ 248 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGS-LVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL 248 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceecccccc-ccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence 99966555 478899999977655442 1000 0111111123568999986655433 36899999988877665 2
Q ss_pred ccCCccEEEEEEcCCCCcEEEEeC
Q 017314 342 KEHTAPVLSCSWSGLGKPLASADK 365 (373)
Q Consensus 342 ~~h~~~V~~~~~s~~g~~l~s~s~ 365 (373)
..-...-..+..+|+|+++.....
T Consensus 249 ~~~~~~~~~v~~~p~g~~~yv~~~ 272 (381)
T COG3391 249 PVGSGAPRGVAVDPAGKAAYVANS 272 (381)
T ss_pred ccccCCCCceeECCCCCEEEEEec
Confidence 211113467899999998776633
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=6e-05 Score=65.99 Aligned_cols=243 Identities=17% Similarity=0.160 Sum_probs=132.9
Q ss_pred EecCccCcEEEEEEcCCCC-EEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCC-EEEEEeCCCcEEEEEcC
Q 017314 83 KINAHEGGCASILFEYNSA-RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWDVN 160 (373)
Q Consensus 83 ~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~ 160 (373)
.+..|...|..++|||... ++..++.+.+|+|.|+++..++..+..+ ..+++++|..|.. ++++|-..|.|.|||++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 4556778899999999877 7899999999999999999888888777 7899999988774 67888899999999997
Q ss_pred CCe-eEEEeec--CCCcEEEEEEeeC-----CCCEEEEEeCCCcEEEEEccCC----eeeeEEeecCceeEEEEccCCCE
Q 017314 161 SGR-VRHTLTG--HTDKVCAVDVSKI-----SSRHVVSAAYDRTLKVWDLHKG----YCVNTIIFHSNCNALAFSMDGQT 228 (373)
Q Consensus 161 ~~~-~~~~~~~--h~~~v~~~~~~~~-----~~~~~~s~s~D~~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~g~~ 228 (373)
..+ +...+.+ -..+|..++.-+. .+..++..+.+ +..|++.-. .++-.......+.++.+.+-.+.
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH 344 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence 543 2222222 2234443332211 12233332222 345554311 11111222233444455443343
Q ss_pred EE-EEeCCC---cEE----EEECCCCeeeEEEec-c---c---ccceEEEEEcCCCCEEEE-eeCCCeEEEEEcccccee
Q 017314 229 IF-SGHIDG---NLR----LWDIQTGKLLSEVAA-H---S---LAAVTSISLSRSGNIILT-SGRDNLHNLFDIRSLEVC 292 (373)
Q Consensus 229 l~-sg~~dg---~i~----iwd~~~~~~~~~~~~-~---~---~~~v~~~~~~~~~~~l~s-~~~d~~i~~~d~~~~~~~ 292 (373)
++ +.-.+. +++ --|.++|..+..... + . ...-..+.-.+++++++. ++..+.+.+||.++.+.+
T Consensus 345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evv 424 (463)
T KOG1645|consen 345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVV 424 (463)
T ss_pred EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhee
Confidence 33 222111 010 012222322211110 0 0 001112222345566554 455678999999999988
Q ss_pred eeeeecCCeeecCeeeeEEC-CCCcEEEEEeCCCcEEEEEcc
Q 017314 293 GSLRATGNRVASNWSRSCIS-PDESYVAAGSADGSVYIWSIS 333 (373)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~s-~~~~~l~sgs~Dg~i~iwd~~ 333 (373)
.++.... ++.. + +-+. ..+.||++-.+| .++|+..+
T Consensus 425 Q~l~~~e-pv~D-i--cp~~~n~~syLa~LTd~-~v~Iyk~e 461 (463)
T KOG1645|consen 425 QTLALSE-PVLD-I--CPNDTNGSSYLALLTDD-RVHIYKNE 461 (463)
T ss_pred eecccCc-ceee-c--ceeecCCcchhhheecc-eEEEEecC
Confidence 8876542 2211 1 1112 234577666655 57777543
No 322
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.44 E-value=0.0003 Score=66.87 Aligned_cols=258 Identities=14% Similarity=0.190 Sum_probs=148.1
Q ss_pred CCEEEEeeCCCcEEEEeCCCCceeeecccccc------ceE--EEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecC
Q 017314 100 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLG------SVL--DLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGH 171 (373)
Q Consensus 100 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 171 (373)
+..++.++.|+.|.-.|..+|+.+-.+..... .+. .+++. ++..++.++.++.|.-+|.++|+.+-.+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 55677788899999999999876544322111 111 11111 2267888889999999999999988766543
Q ss_pred CCc-----EE-EEEEeeCCCCEEEEEe---------CCCcEEEEEccCCeeeeEEeecCc--------------------
Q 017314 172 TDK-----VC-AVDVSKISSRHVVSAA---------YDRTLKVWDLHKGYCVNTIIFHSN-------------------- 216 (373)
Q Consensus 172 ~~~-----v~-~~~~~~~~~~~~~s~s---------~D~~i~vwd~~~~~~~~~~~~~~~-------------------- 216 (373)
... +. ...+. ...++.++ .++.+.-.|..+|+.+-.+.....
T Consensus 140 ~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 140 DQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred CCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 221 11 11111 23444443 467888899999887665543210
Q ss_pred -e-eEEEEccCCCEEEEEeCCC------------------cEEEEECCCCeeeEEEeccccc----------ceEEEEEc
Q 017314 217 -C-NALAFSMDGQTIFSGHIDG------------------NLRLWDIQTGKLLSEVAAHSLA----------AVTSISLS 266 (373)
Q Consensus 217 -~-~~~~~~~~g~~l~sg~~dg------------------~i~iwd~~~~~~~~~~~~~~~~----------~v~~~~~~ 266 (373)
+ ...++.+.+..++.++.++ .|.-+|..+|+....+...... .+..+. .
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~ 295 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-P 295 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-c
Confidence 0 1234555567788777665 7999999999988776432100 011111 1
Q ss_pred CCCC---EEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEE-----------------EeCCCc
Q 017314 267 RSGN---IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAA-----------------GSADGS 326 (373)
Q Consensus 267 ~~~~---~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-----------------gs~Dg~ 326 (373)
-++. .++.++.++.+..+|.++++.+-........ ...+| +..++. ...+|.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~-------~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQP-------MAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccc-------cccCC-ceEEEccccccccCcccccCCCCCCCceE
Confidence 2333 5777888999999999988765544321111 11233 211111 123567
Q ss_pred EEEEEccCceEEEEeccC--C------ccEE--EEEEcCCCCcEEEEeCCCeEEEc
Q 017314 327 VYIWSISKADIVRTLKEH--T------APVL--SCSWSGLGKPLASADKNGVVCVW 372 (373)
Q Consensus 327 i~iwd~~~~~~~~~l~~h--~------~~V~--~~~~s~~g~~l~s~s~dg~i~iW 372 (373)
|.-.|..+|+.+=..... . .+.. .+.. .+..|..++.||.|+-+
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~al 421 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAF 421 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEE
Confidence 777777777765433211 0 1111 1122 45677778888887654
No 323
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.40 E-value=3.5e-06 Score=71.13 Aligned_cols=232 Identities=13% Similarity=0.215 Sum_probs=133.6
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-----eEEEeecCCC------------cEEEEEEee-CCCCEEEEEe
Q 017314 131 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR-----VRHTLTGHTD------------KVCAVDVSK-ISSRHVVSAA 192 (373)
Q Consensus 131 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-----~~~~~~~h~~------------~v~~~~~~~-~~~~~~~s~s 192 (373)
..|+++.|..-|.++++|...|.|.+|.-+... ....+++|.- .|..+.|.. ..-..++...
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 468889999999999999999999999765432 2234556643 355666553 3345677778
Q ss_pred CCCcEEEEEccCCeeeeEEeecCce-eEEEEccCCCEE-------E-EEeCCCcEEEEECCCCeeeEEE-ecccccceEE
Q 017314 193 YDRTLKVWDLHKGYCVNTIIFHSNC-NALAFSMDGQTI-------F-SGHIDGNLRLWDIQTGKLLSEV-AAHSLAAVTS 262 (373)
Q Consensus 193 ~D~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~g~~l-------~-sg~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~ 262 (373)
.|++|++|.+...... .. ...+. .++.+-..|... - ....|..|..... +.. ..| ...+.+
T Consensus 107 NdktiKlWKiyeknlk-~v-a~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~------rvyaNaH-~yhiNS 177 (460)
T COG5170 107 NDKTIKLWKIYEKNLK-VV-AENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPC------RVYANAH-PYHINS 177 (460)
T ss_pred CCceeeeeeeecccch-hh-hccccccccccccCCCcCCHHHhhcccccccceEEEeccc------eeccccc-eeEeee
Confidence 9999999988654211 00 00000 111111111110 0 0111222222111 111 223 367999
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEEccccceeeeee---ecCC-eeecCeeeeEECCCC-cEEEEEeCCCcEEEEEccCceE
Q 017314 263 ISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR---ATGN-RVASNWSRSCISPDE-SYVAAGSADGSVYIWSISKADI 337 (373)
Q Consensus 263 ~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~---~~~~-~~~~~~~~~~~s~~~-~~l~sgs~Dg~i~iwd~~~~~~ 337 (373)
++|..|...++++ .|-.|.+|.+........+. .+.. .....+....|+|.. ..+.-.+..|.|++-|+....+
T Consensus 178 iS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~al 256 (460)
T COG5170 178 ISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL 256 (460)
T ss_pred eeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhh
Confidence 9999999888876 56789999986543222221 1110 111122234577743 4555567789999999874221
Q ss_pred E----------------EEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 338 V----------------RTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 338 ~----------------~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
. .-+.+-..+|..+.|+|.|+||++-+- -+++||+
T Consensus 257 cdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 257 CDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD 307 (460)
T ss_pred ccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence 1 012233457889999999999987653 5788885
No 324
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.38 E-value=0.00081 Score=58.91 Aligned_cols=230 Identities=18% Similarity=0.264 Sum_probs=132.5
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEE----------
Q 017314 98 YNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT---------- 167 (373)
Q Consensus 98 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~---------- 167 (373)
..++.|+.|..+| +.+++.........+. +..+|..+.+.++-+.++.-+ |+++.++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3578899999998 8999983222222221 233488999988888776665 49999999875433221
Q ss_pred ----eecCCCcEEEEE-EeeCCCCEEEEEeCCCcEEEEEccCC-----eeeeEEeecCceeEEEEccCCCEEEEEeCCCc
Q 017314 168 ----LTGHTDKVCAVD-VSKISSRHVVSAAYDRTLKVWDLHKG-----YCVNTIIFHSNCNALAFSMDGQTIFSGHIDGN 237 (373)
Q Consensus 168 ----~~~h~~~v~~~~-~~~~~~~~~~s~s~D~~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~ 237 (373)
.......+...+ .....+...+.....++|.+|..... ...+.+.....+..++|. ++.++.|..+ .
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~ 158 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-G 158 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-c
Confidence 111223344443 11223444555666679998877542 456667777888899988 5567777654 4
Q ss_pred EEEEECCCCeeeEEEeccc-----------ccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceee--eeeecCCeeec
Q 017314 238 LRLWDIQTGKLLSEVAAHS-----------LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG--SLRATGNRVAS 304 (373)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~--~~~~~~~~~~~ 304 (373)
..+.|+.++....-+.... ..++..+.++ ++.+|++- |+.-.+.|... +... .+.-...
T Consensus 159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G-~~~r~~~i~W~~~---- 230 (275)
T PF00780_consen 159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNG-EPSRKSTIQWSSA---- 230 (275)
T ss_pred eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCC-CcCcccEEEcCCc----
Confidence 7788998765543322111 1233334443 34555542 33333444322 1111 1111111
Q ss_pred CeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCC
Q 017314 305 NWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHT 345 (373)
Q Consensus 305 ~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~ 345 (373)
...+.-...||+.-+.++ |-||++.++++++.+....
T Consensus 231 ---p~~~~~~~pyli~~~~~~-iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 231 ---PQSVAYSSPYLIAFSSNS-IEVRSLETGELVQTIPLPN 267 (275)
T ss_pred ---hhEEEEECCEEEEECCCE-EEEEECcCCcEEEEEECCC
Confidence 111222455887777655 9999999999999887543
No 325
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.36 E-value=0.00049 Score=62.61 Aligned_cols=247 Identities=21% Similarity=0.220 Sum_probs=124.9
Q ss_pred CCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEE-Eeec-------C---------
Q 017314 109 DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH-TLTG-------H--------- 171 (373)
Q Consensus 109 D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~-------h--------- 171 (373)
.+.+.|+|++++........ ...+....|+|+|+.++... ++.|.+++..+++..+ +..| -
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 46788999999766544333 56778889999999988775 5789999987775432 2222 0
Q ss_pred CCcEEEEEEeeCCCCEEEEEe-CCCcEEEE-----------------------------------EccCCeeeeEEeec-
Q 017314 172 TDKVCAVDVSKISSRHVVSAA-YDRTLKVW-----------------------------------DLHKGYCVNTIIFH- 214 (373)
Q Consensus 172 ~~~v~~~~~~~~~~~~~~s~s-~D~~i~vw-----------------------------------d~~~~~~~~~~~~~- 214 (373)
-+.-..+-|+| ++++|+... .+..|+.+ |+.+++.. .+...
T Consensus 100 ~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~-~~~~~~ 177 (353)
T PF00930_consen 100 FDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT-ELDPPN 177 (353)
T ss_dssp SSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC-EE---H
T ss_pred cccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE-Eeeecc
Confidence 01123456777 455555443 33333333 22222211 00000
Q ss_pred ------CceeEEEEccCCCEEEEE--eCCC---cEEEEECCCCeeeEEEecccccc---eEEEEEc-CCCC-EEEEeeCC
Q 017314 215 ------SNCNALAFSMDGQTIFSG--HIDG---NLRLWDIQTGKLLSEVAAHSLAA---VTSISLS-RSGN-IILTSGRD 278 (373)
Q Consensus 215 ------~~~~~~~~~~~g~~l~sg--~~dg---~i~iwd~~~~~~~~~~~~~~~~~---v~~~~~~-~~~~-~l~s~~~d 278 (373)
.-+..+.|.+++..|+.. ..+. .+.+.|..++............. .....+. +++. +|.....|
T Consensus 178 ~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 178 SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence 014567888888844432 2222 35667777665433332222122 2234443 5544 55555577
Q ss_pred CeEEEEEc--cccceeeeeeecCCeeecCeeeeEECCCCcEE-EEEeCCC----cEEEEEccCceEEEEeccCCccEEEE
Q 017314 279 NLHNLFDI--RSLEVCGSLRATGNRVASNWSRSCISPDESYV-AAGSADG----SVYIWSISKADIVRTLKEHTAPVLSC 351 (373)
Q Consensus 279 ~~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~sgs~Dg----~i~iwd~~~~~~~~~l~~h~~~V~~~ 351 (373)
|.-.++-+ .... ...+....-.+. ....+++++..| .+|..++ .|+.-++..+..++.|....+.-..+
T Consensus 258 G~~hly~~~~~~~~-~~~lT~G~~~V~---~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~ 333 (353)
T PF00930_consen 258 GYRHLYLYDLDGGK-PRQLTSGDWEVT---SILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSA 333 (353)
T ss_dssp SSEEEEEEETTSSE-EEESS-SSS-EE---EEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEE
T ss_pred CCcEEEEEcccccc-eeccccCceeec---ccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEE
Confidence 76555544 3332 122222221221 124567776544 4555432 45555666234455555443333799
Q ss_pred EEcCCCCcEEEE
Q 017314 352 SWSGLGKPLASA 363 (373)
Q Consensus 352 ~~s~~g~~l~s~ 363 (373)
.|||+|++++-.
T Consensus 334 ~~Spdg~y~v~~ 345 (353)
T PF00930_consen 334 SFSPDGKYYVDT 345 (353)
T ss_dssp EE-TTSSEEEEE
T ss_pred EECCCCCEEEEE
Confidence 999999977543
No 326
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.35 E-value=0.00084 Score=63.85 Aligned_cols=233 Identities=17% Similarity=0.197 Sum_probs=133.5
Q ss_pred CEEEEeeCCCcEEEEeCCCCceeeecccccc-----ceE-EEEEcCCCCEEEEEe---------CCCcEEEEEcCCCeeE
Q 017314 101 ARLISGGQDKSIKLWDTNTGSLSSTLYGCLG-----SVL-DLAITHDNRSVIAAS---------SSNNLYVWDVNSGRVR 165 (373)
Q Consensus 101 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-----~v~-~~~~~~~~~~l~s~s---------~d~~i~iwd~~~~~~~ 165 (373)
..++.++.|+.|.-+|.++|+.+-.+..... .+. +..+. +..++.++ .++.+..+|..+|+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 6788888999999999999987644332111 011 11121 24455443 3678899999999887
Q ss_pred EEeecCCCc--------------------EE-EEEEeeCCCCEEEEEeCCC------------------cEEEEEccCCe
Q 017314 166 HTLTGHTDK--------------------VC-AVDVSKISSRHVVSAAYDR------------------TLKVWDLHKGY 206 (373)
Q Consensus 166 ~~~~~h~~~--------------------v~-~~~~~~~~~~~~~s~s~D~------------------~i~vwd~~~~~ 206 (373)
..+...... +. ...+.+ ....++.++.++ .|.-.|+.+|+
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 766542110 10 111222 245566666554 68888999998
Q ss_pred eeeEEeecCc------e-eEEEEc----cCCC---EEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEE
Q 017314 207 CVNTIIFHSN------C-NALAFS----MDGQ---TIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNII 272 (373)
Q Consensus 207 ~~~~~~~~~~------~-~~~~~~----~~g~---~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 272 (373)
..-.+..... . ....+. -+|. .++.++.+|.+...|.++|+.+...... ...+..+| +..+
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~-~~vy 342 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP-GLVY 342 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC-ceEE
Confidence 7766532210 0 111111 2343 5788899999999999999988765422 11123333 2222
Q ss_pred EE-----------------eeCCCeEEEEEccccceeeeeeecCCee-----ecCeeeeEECCCCcEEEEEeCCCcEEEE
Q 017314 273 LT-----------------SGRDNLHNLFDIRSLEVCGSLRATGNRV-----ASNWSRSCISPDESYVAAGSADGSVYIW 330 (373)
Q Consensus 273 ~s-----------------~~~d~~i~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~l~sgs~Dg~i~iw 330 (373)
+. ...++.+.-+|+.+++.+=+........ ...+. ......+.+|+.|+.||.|+.+
T Consensus 343 v~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~-~~~~~~g~~v~~g~~dG~l~al 421 (488)
T cd00216 343 LGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWG-GSLATAGNLVFAGAADGYFRAF 421 (488)
T ss_pred EccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccC-cceEecCCeEEEECCCCeEEEE
Confidence 21 1134566677777666543332210000 00000 0011256788889999999999
Q ss_pred EccCceEEEEec
Q 017314 331 SISKADIVRTLK 342 (373)
Q Consensus 331 d~~~~~~~~~l~ 342 (373)
|..+|+.+-.++
T Consensus 422 d~~tG~~lW~~~ 433 (488)
T cd00216 422 DATTGKELWKFR 433 (488)
T ss_pred ECCCCceeeEEE
Confidence 999999887655
No 327
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=1.7e-05 Score=75.20 Aligned_cols=165 Identities=14% Similarity=0.174 Sum_probs=112.3
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEe
Q 017314 174 KVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA 253 (373)
Q Consensus 174 ~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~ 253 (373)
.++|+++ ..+.++-|..+|.|++.+..... .+...|+.. ..+|.+++||+.||+|.|-.+-+.+....+.
T Consensus 41 ~is~~av---~~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d 110 (846)
T KOG2066|consen 41 AISCCAV---HDKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEITQYD 110 (846)
T ss_pred HHHHHHh---hcceeeeccccceEEEEecCCcc--ccccccccc-----ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence 3444444 35788999999999999875432 233333322 5589999999999999999998888877777
Q ss_pred cccccceEEEEEcCC-----CCEEEEeeCCCeEEEEEccccceeeee--eecCCeeecCeeeeEECCCCcEEEEEeCCCc
Q 017314 254 AHSLAAVTSISLSRS-----GNIILTSGRDNLHNLFDIRSLEVCGSL--RATGNRVASNWSRSCISPDESYVAAGSADGS 326 (373)
Q Consensus 254 ~~~~~~v~~~~~~~~-----~~~l~s~~~d~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~ 326 (373)
.+ .++.+++++|+ .+.+++||.-| +.++.-+-....... ....+.+ .+++-.|.++|=++++|
T Consensus 111 f~--rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I------~~i~W~g~lIAWand~G- 180 (846)
T KOG2066|consen 111 FK--RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPI------HSIKWRGNLIAWANDDG- 180 (846)
T ss_pred cC--CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccce------EEEEecCcEEEEecCCC-
Confidence 66 58999999998 56799999888 666653322111111 1111111 23445789999999998
Q ss_pred EEEEEccCceEEEEeccCCccE------EEEEEcCCCC
Q 017314 327 VYIWSISKADIVRTLKEHTAPV------LSCSWSGLGK 358 (373)
Q Consensus 327 i~iwd~~~~~~~~~l~~h~~~V------~~~~~s~~g~ 358 (373)
|+|||+..++.+..+......+ ..+.|.++.+
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~ 218 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR 218 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe
Confidence 9999999988877765433322 4567776543
No 328
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.00014 Score=69.61 Aligned_cols=205 Identities=16% Similarity=0.213 Sum_probs=123.2
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCc-EEEEEEeeCCCCEEEEEeCCCc-----EEEEEccCC-----
Q 017314 137 AITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDK-VCAVDVSKISSRHVVSAAYDRT-----LKVWDLHKG----- 205 (373)
Q Consensus 137 ~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~~s~s~D~~-----i~vwd~~~~----- 205 (373)
.+++.+..++.|+.+|.|.+.+- .-+.++.++++... |..+ +.....+++++-+.|++ +++||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 46778889999999999888763 23444777777766 4433 33334567888777654 899998632
Q ss_pred -eee---eEEe--e---cCceeEEEEccCCCEEEEEeCCCcEEEEECC--CCe-eeEEEecccccceEEEEEcCCCCEEE
Q 017314 206 -YCV---NTII--F---HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ--TGK-LLSEVAAHSLAAVTSISLSRSGNIIL 273 (373)
Q Consensus 206 -~~~---~~~~--~---~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~--~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~ 273 (373)
.+. +.+. . ...+.+++++.+-+.+++|-.||.|..+.-. ..+ .-..+......+|+.+.+..++..++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 233 1111 1 1346789999998999999999999988421 111 11122223347899999999888733
Q ss_pred EeeCCCeEEEEEccccceeee-eeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEec-cCCccE
Q 017314 274 TSGRDNLHNLFDIRSLEVCGS-LRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLK-EHTAPV 348 (373)
Q Consensus 274 s~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~-~h~~~V 348 (373)
=......|.+|.+....+... +..++.... +..+++...-+++|+.. -|++|+.....+--.+. ||....
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~ln----Css~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLN----CSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred EEEecceeEEEEecCCCcceeeeccCCccce----eeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCeEEE
Confidence 333445677888763322222 333332222 23344332224444433 48999987666655565 665443
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=1.6e-05 Score=75.78 Aligned_cols=106 Identities=12% Similarity=0.179 Sum_probs=79.8
Q ss_pred EEeeCCCCEEEEEe----CCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEec
Q 017314 179 DVSKISSRHVVSAA----YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA 254 (373)
Q Consensus 179 ~~~~~~~~~~~s~s----~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 254 (373)
+|+|. ..+++.++ ..|+|-|| +.+|.+.+....+-.+.++||+|..-.|+.|-.-|.+.+|...+.+.-.....
T Consensus 22 SWHPs-ePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~t 99 (1416)
T KOG3617|consen 22 SWHPS-EPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVET 99 (1416)
T ss_pred ccCCC-CceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccC
Confidence 35553 34555444 35777777 34565555555555577899999999999999999999999887655444444
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q 017314 255 HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR 287 (373)
Q Consensus 255 ~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~ 287 (373)
| ..+|..+.|+++|+.++++..-+.+.+|...
T Consensus 100 h-~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 100 H-PAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred C-CCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 4 4899999999999999999999999999865
No 330
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.29 E-value=2.8e-05 Score=71.54 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=55.8
Q ss_pred CeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 305 NWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 305 ~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
....++.+|+...|+.|+.||.|.+||...+.- .+..+.-..+.++|+|+|..++.|+..|.|.+||
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence 344577899999999999999999999877633 2333445578999999999999999999999996
No 331
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.29 E-value=8.4e-05 Score=68.54 Aligned_cols=115 Identities=16% Similarity=0.242 Sum_probs=77.9
Q ss_pred eEEEEEcCC-CCEEEE----EeCCCcE----EEEEcCCCeeEE---EeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 017314 133 VLDLAITHD-NRSVIA----ASSSNNL----YVWDVNSGRVRH---TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 200 (373)
Q Consensus 133 v~~~~~~~~-~~~l~s----~s~d~~i----~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vw 200 (373)
..++.|+.. +..+.+ .+.++.+ .+|+...++... +--.....|.+++++| +...++.|+.||+|.+|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILY 286 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEE
Confidence 356667653 334443 2334432 456665543321 1123567788888988 56679999999999999
Q ss_pred EccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeee
Q 017314 201 DLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL 249 (373)
Q Consensus 201 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~ 249 (373)
|...+..... ...-.++.++|+|+|..+++|+..|.+.+||+.-....
T Consensus 287 D~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 287 DTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred EcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence 9987643322 23334688999999999999999999999998755433
No 332
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.00074 Score=62.02 Aligned_cols=202 Identities=18% Similarity=0.235 Sum_probs=141.7
Q ss_pred EEEEEcCCCCEE-EEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCeeEEE
Q 017314 92 ASILFEYNSARL-ISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS---SNNLYVWDVNSGRVRHT 167 (373)
Q Consensus 92 ~~~~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~---d~~i~iwd~~~~~~~~~ 167 (373)
..+++++++..+ +....+..|.+.|..+........... ....++++++++.++.+.. ++++.+.|..+++...+
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 356788888744 555556899999988776665544322 5567899999988776665 68999999999888777
Q ss_pred eecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeee-E----EeecCceeEEEEccCCCEEEEEeCC---CcEE
Q 017314 168 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN-T----IIFHSNCNALAFSMDGQTIFSGHID---GNLR 239 (373)
Q Consensus 168 ~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~-~----~~~~~~~~~~~~~~~g~~l~sg~~d---g~i~ 239 (373)
...-..+ ..+++.|......++-+.++.|.+.|.......+ + .........+.++|+|.+++..... +.+.
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~ 234 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVL 234 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence 5443344 7788888544455566689999999976654442 1 2222334678899999987765443 5899
Q ss_pred EEECCCCeeeEE-EecccccceEEEEEcCCCCEEEEeeC-CCeEEEEEccccceeeeee
Q 017314 240 LWDIQTGKLLSE-VAAHSLAAVTSISLSRSGNIILTSGR-DNLHNLFDIRSLEVCGSLR 296 (373)
Q Consensus 240 iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~~~~ 296 (373)
..|..++..... ...... ....+.++|+|..+.+... .+.+.+.|..+........
T Consensus 235 ~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 235 KIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred EEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 999998877665 333322 4567889999998887744 4888899988766555443
No 333
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.25 E-value=2.9e-07 Score=84.58 Aligned_cols=194 Identities=15% Similarity=0.287 Sum_probs=119.9
Q ss_pred CcEEEEEEeeCC-CCEEEEEeCCCcEEEEEccCCeee-eEE--eecCceeEEEEcc-CCCEEEEEe----CCCcEEEEEC
Q 017314 173 DKVCAVDVSKIS-SRHVVSAAYDRTLKVWDLHKGYCV-NTI--IFHSNCNALAFSM-DGQTIFSGH----IDGNLRLWDI 243 (373)
Q Consensus 173 ~~v~~~~~~~~~-~~~~~s~s~D~~i~vwd~~~~~~~-~~~--~~~~~~~~~~~~~-~g~~l~sg~----~dg~i~iwd~ 243 (373)
..+.|++..... ...++.|..+|.|.+-..+...-. ..+ .....|++++|++ |.+.|++|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 344555544322 245677888999988877543221 111 2234589999988 566677664 3667999999
Q ss_pred CCC--eee--EEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccc-cceeeeeeecCCeeecCeeeeEECC-CCcE
Q 017314 244 QTG--KLL--SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISP-DESY 317 (373)
Q Consensus 244 ~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~ 317 (373)
.++ .+. ..+.........+++|..+.+++++|...+.++++|+|. ......+... .+....++| .+.|
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk------~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTK------YVQGITVDPFSPNY 210 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhh------hcccceecCCCCCc
Confidence 876 111 112221234566889999999999999999999999983 2222222110 011134567 7789
Q ss_pred EEEEeCCCcEEEEEc-cC-ceEEEEeccCC----ccEEEEEEcCCCC-cEEEEeCC-CeEEEcC
Q 017314 318 VAAGSADGSVYIWSI-SK-ADIVRTLKEHT----APVLSCSWSGLGK-PLASADKN-GVVCVWT 373 (373)
Q Consensus 318 l~sgs~Dg~i~iwd~-~~-~~~~~~l~~h~----~~V~~~~~s~~g~-~l~s~s~d-g~i~iW~ 373 (373)
+++-+ ||.|.+||. .+ ..++..+...+ ..+..++|.|... .+++.+.| ++|+.++
T Consensus 211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence 88777 999999993 22 23333333222 2489999999643 56666665 6677653
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.00053 Score=65.91 Aligned_cols=198 Identities=13% Similarity=0.201 Sum_probs=125.6
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccc-eEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCC------
Q 017314 95 LFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGS-VLDLAITHDNRSVIAASSSN-----NLYVWDVNSG------ 162 (373)
Q Consensus 95 ~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~s~d~-----~i~iwd~~~~------ 162 (373)
+|++.+..++-|+.||.|.+.+-. -+....+..+... |..+-...+...|++.+.|+ .++|||++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 578889999999999999887632 2333566666655 55454444446788877664 4899998632
Q ss_pred eeE--EEeec-----CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEE--ccCCeeee---EEeecCceeEEEEccCCCE-E
Q 017314 163 RVR--HTLTG-----HTDKVCAVDVSKISSRHVVSAAYDRTLKVWD--LHKGYCVN---TIIFHSNCNALAFSMDGQT-I 229 (373)
Q Consensus 163 ~~~--~~~~~-----h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd--~~~~~~~~---~~~~~~~~~~~~~~~~g~~-l 229 (373)
+++ +.+.. ...++++++++. +-..++.|-.+|.|..+. +...+-.+ ......+++.+++..++.. +
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 233 12222 245677888876 467788888999998873 21111111 2233456899999998887 3
Q ss_pred EEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeee
Q 017314 230 FSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR 296 (373)
Q Consensus 230 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~ 296 (373)
+++. ...|.+|.+....+......++.....|..+++....+++++ +..+.+||.........+.
T Consensus 188 Fv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 188 FVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 3433 457899998743322332333346788888887766455554 3467888877555444443
No 335
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.19 E-value=0.00062 Score=67.86 Aligned_cols=195 Identities=17% Similarity=0.138 Sum_probs=123.9
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEEC----CCCee
Q 017314 173 DKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDI----QTGKL 248 (373)
Q Consensus 173 ~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~----~~~~~ 248 (373)
+.|.++.|.. +.+.++.+..+|.|.+-|..+......-.....+.+++|+||+..++-.+.++++.+-+- -..+.
T Consensus 69 ~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLA-DTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEec-ccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 5788888875 567788888899999988877644322233456899999999999998888777765321 11111
Q ss_pred e-------------------EEEecc--------------------cccceEEEEEcCCCCEEEEe-----eCCCeEEEE
Q 017314 249 L-------------------SEVAAH--------------------SLAAVTSISLSRSGNIILTS-----GRDNLHNLF 284 (373)
Q Consensus 249 ~-------------------~~~~~~--------------------~~~~v~~~~~~~~~~~l~s~-----~~d~~i~~~ 284 (373)
+ ..+.+. ....-++|+|--||.++++. ...+.+++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 1 111110 00123468999999998873 233789999
Q ss_pred EccccceeeeeeecCCeeecCeeeeEECCCCcEEEEE---eCCCcEEEEEccC---ceEEEEeccCCccEEEEEEcCCCC
Q 017314 285 DIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG---SADGSVYIWSISK---ADIVRTLKEHTAPVLSCSWSGLGK 358 (373)
Q Consensus 285 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg---s~Dg~i~iwd~~~---~~~~~~l~~h~~~V~~~~~s~~g~ 358 (373)
|-. + .+.....+.......+++-|.|.++++- ++|+.|.++.... ++..-.+..-..+|..++|+.++.
T Consensus 228 drE-g----~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 228 DRE-G----ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred ccc-c----hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence 965 1 1222222222222335567999999884 4566899987543 222222223344589999999999
Q ss_pred cEEE---EeCCCeEEEcC
Q 017314 359 PLAS---ADKNGVVCVWT 373 (373)
Q Consensus 359 ~l~s---~s~dg~i~iW~ 373 (373)
.||. ......|++|.
T Consensus 303 iLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred ceeeeecccccceEEEEE
Confidence 9988 44455599984
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.10 E-value=0.0036 Score=58.15 Aligned_cols=221 Identities=15% Similarity=0.177 Sum_probs=104.8
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeee
Q 017314 130 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN 209 (373)
Q Consensus 130 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~ 209 (373)
...+..+.++|+|+.++. ..|+...|+.....+.... +.-....|.. .+.++.-...++|+++.--+.....
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~--~n~yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSS--RNRYAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-T--SSEEEEE-TTS-EEEEETTEE-TT-
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEec--CccEEEEECCCeEEEEEcCccccce
Confidence 345678999999998877 6666677776443333222 1223344654 3456666668889996322222222
Q ss_pred EEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEcccc
Q 017314 210 TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL 289 (373)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~ 289 (373)
.+.....+..+-. |..|...+.+ .|.+||+.+++.+..+... .|..+.|++++.+++-.+.+. +.+++....
T Consensus 104 ~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~~-i~il~~~~~ 175 (443)
T PF04053_consen 104 SIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKDS-IYILKYNLE 175 (443)
T ss_dssp ----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S-S-EEEEEE-HH
T ss_pred EEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCCe-EEEEEecch
Confidence 3333333343322 7777766554 8999999999999988753 489999999999999887765 445443221
Q ss_pred ceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccC-------ceEEEEeccCCccEEEEEEcCCCCcEEE
Q 017314 290 EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK-------ADIVRTLKEHTAPVLSCSWSGLGKPLAS 362 (373)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~-------~~~~~~l~~h~~~V~~~~~s~~g~~l~s 362 (373)
.... .....+...+. .++--...+-||.+++.+.||...+ |+. .++..-..++.=+...|..+.+..
T Consensus 176 ~~~~---~~~~g~e~~f~--~~~E~~~~IkSg~W~~d~fiYtT~~~lkYl~~Ge~-~~i~~ld~~~yllgy~~~~~~ly~ 249 (443)
T PF04053_consen 176 AVAA---IPEEGVEDAFE--LIHEISERIKSGCWVEDCFIYTTSNHLKYLVNGET-GIIAHLDKPLYLLGYLPKENRLYL 249 (443)
T ss_dssp HHHH---BTTTB-GGGEE--EEEEE-S--SEEEEETTEEEEE-TTEEEEEETTEE-EEEEE-SS--EEEEEETTTTEEEE
T ss_pred hccc---ccccCchhceE--EEEEecceeEEEEEEcCEEEEEcCCeEEEEEcCCc-ceEEEcCCceEEEEEEccCCEEEE
Confidence 0000 00000000000 0000022333444444444443332 211 112222356777888887788888
Q ss_pred EeCCCeEEEc
Q 017314 363 ADKNGVVCVW 372 (373)
Q Consensus 363 ~s~dg~i~iW 372 (373)
.+.|+.|..+
T Consensus 250 ~Dr~~~v~~~ 259 (443)
T PF04053_consen 250 IDRDGNVISY 259 (443)
T ss_dssp E-TT--EEEE
T ss_pred EECCCCEEEE
Confidence 8888887654
No 337
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.08 E-value=8.2e-07 Score=81.76 Aligned_cols=197 Identities=16% Similarity=0.220 Sum_probs=122.9
Q ss_pred cEEEEEEcCCC--CEEEEeeCCCcEEEEeCCCCc--eeeeccccccceEEEEEcCCCCEEEEEeC-----CCcEEEEEcC
Q 017314 90 GCASILFEYNS--ARLISGGQDKSIKLWDTNTGS--LSSTLYGCLGSVLDLAITHDNRSVIAASS-----SNNLYVWDVN 160 (373)
Q Consensus 90 ~v~~~~~~~~~--~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~s~-----d~~i~iwd~~ 160 (373)
.+.|++...+. -.++.|..+|.|-+-.+.... -.....++..+.++++|++-+...++++. |..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 45556555444 377888899999988765421 13345567778889999876544444444 3569999998
Q ss_pred CC--eeEE--Eeec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEcc-CCCEEEEEeC
Q 017314 161 SG--RVRH--TLTG-HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSM-DGQTIFSGHI 234 (373)
Q Consensus 161 ~~--~~~~--~~~~-h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~sg~~ 234 (373)
++ .+.. .+.+ --....+++|. .+.+.+++|...+.+.++|++.............+..+.+.| .+.++++-.
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~- 215 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS- 215 (783)
T ss_pred cccCCCccccccccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-
Confidence 76 2221 1111 22334466666 367788999999999999998432111111111345677788 777776554
Q ss_pred CCcEEEEE-CCCCeeeEEEeccc----ccceEEEEEcCCCC-EEEEeeCC-CeEEEEEccc
Q 017314 235 DGNLRLWD-IQTGKLLSEVAAHS----LAAVTSISLSRSGN-IILTSGRD-NLHNLFDIRS 288 (373)
Q Consensus 235 dg~i~iwd-~~~~~~~~~~~~~~----~~~v~~~~~~~~~~-~l~s~~~d-~~i~~~d~~~ 288 (373)
||.|.+|| .+.-+.......+. ...+..++|+|..+ .+++..+| ++|+++|+..
T Consensus 216 dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 216 DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 99999999 43322211111111 23588999999654 66777766 6799999863
No 338
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.05 E-value=0.00013 Score=71.30 Aligned_cols=138 Identities=18% Similarity=0.223 Sum_probs=88.5
Q ss_pred CEEE-EEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcC-----CCCEEEEeeCCCeEEEEEccccc--eeeeeeec
Q 017314 227 QTIF-SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR-----SGNIILTSGRDNLHNLFDIRSLE--VCGSLRAT 298 (373)
Q Consensus 227 ~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~d~~i~~~d~~~~~--~~~~~~~~ 298 (373)
++|+ .......|+-.|+..|+.+.+...+...+|..++-+. +...-+.|-.++.+..||.|-.. .+. -..+
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~-~~~k 572 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD-SQSK 572 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee-cccc
Confidence 3444 3345678999999999999999888644455443221 12234566677788889988532 111 1111
Q ss_pred CCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCC
Q 017314 299 GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN 366 (373)
Q Consensus 299 ~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~d 366 (373)
.......+++.+-+ ...+||.||.+|.||+||-.....-..|.+-..||.+|..+.||+||+.....
T Consensus 573 ~Y~~~~~Fs~~aTt-~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 573 QYSSKNNFSCFATT-EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred ccccCCCceEEEec-CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence 11222234434333 44589999999999999954333233456677899999999999998766543
No 339
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.04 E-value=1.9e-05 Score=45.37 Aligned_cols=39 Identities=44% Similarity=0.730 Sum_probs=34.7
Q ss_pred ceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 335 ADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 335 ~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
+.+...+..|...|.++.|+|.+.++++++.||.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
No 340
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.04 E-value=0.0054 Score=51.19 Aligned_cols=70 Identities=13% Similarity=0.049 Sum_probs=53.2
Q ss_pred CCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEee
Q 017314 100 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT 169 (373)
Q Consensus 100 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 169 (373)
|+.++.|...+.+.+.+.++|.....+......=......+++..+..++.|++.+..|..+..++...+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 6779999999999999999996654443221111123456889999999999999999999888877654
No 341
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.00 E-value=0.011 Score=54.27 Aligned_cols=262 Identities=14% Similarity=0.115 Sum_probs=132.6
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCC--------
Q 017314 90 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS-------- 161 (373)
Q Consensus 90 ~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-------- 161 (373)
.|+.+.|.++...|+.|-..|.|.||.....+... ..-..+-....+.+- ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 47889999999999999999999999775433221 000001111111100 01111222233321
Q ss_pred -CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC---------ceeEEEEc-----cCC
Q 017314 162 -GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS---------NCNALAFS-----MDG 226 (373)
Q Consensus 162 -~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~---------~~~~~~~~-----~~g 226 (373)
-.+...+....++|++++.+. -.+++.|..+|++.|.|++....+....... .++++.|+ .|+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 124445556688999999874 4689999999999999998766554422211 24566664 233
Q ss_pred ---CEEEEEeCCCcEEEEECCC---CeeeEEE---e-cccccceEEEE-EcCC--------------------CCEEEEe
Q 017314 227 ---QTIFSGHIDGNLRLWDIQT---GKLLSEV---A-AHSLAAVTSIS-LSRS--------------------GNIILTS 275 (373)
Q Consensus 227 ---~~l~sg~~dg~i~iwd~~~---~~~~~~~---~-~~~~~~v~~~~-~~~~--------------------~~~l~s~ 275 (373)
-++++|...|.+.+|.+.. +.....+ . .+. ..+..+. ++.+ -+-++..
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~-~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv 231 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHD-SPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV 231 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCC-CceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE
Confidence 4688999999999998741 1111111 1 122 3333333 3211 0123444
Q ss_pred eCCCeEEEEEccccceeeeeeecCCeeecCeeeeEE-----CCCCcEEEEEeCCCcEEEEEccCceEEEEeccCC----c
Q 017314 276 GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI-----SPDESYVAAGSADGSVYIWSISKADIVRTLKEHT----A 346 (373)
Q Consensus 276 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~----~ 346 (373)
..+..++++...+.+..++.. .....+. .+++ ...+..|++-..+|.|+++.+..-+.+..++-+. .
T Consensus 232 vSe~~irv~~~~~~k~~~K~~--~~~~~~~--~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~ 307 (395)
T PF08596_consen 232 VSESDIRVFKPPKSKGAHKSF--DDPFLCS--SASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSR 307 (395)
T ss_dssp E-SSEEEEE-TT---EEEEE---SS-EEEE--EEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HH
T ss_pred EcccceEEEeCCCCcccceee--ccccccc--eEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccc
Confidence 456678888887665544433 2211111 1222 2356677888899999999999988877665432 2
Q ss_pred cEEEEEEcCCCCcEEEEeCC
Q 017314 347 PVLSCSWSGLGKPLASADKN 366 (373)
Q Consensus 347 ~V~~~~~s~~g~~l~s~s~d 366 (373)
.+....++++|..++-.|..
T Consensus 308 ~~~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 308 RLSSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp HHTT-EE-TTS-EEEE-SSS
T ss_pred cccccEECCCCCEEEEeCcc
Confidence 34567778888877655543
No 342
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.99 E-value=0.005 Score=52.46 Aligned_cols=201 Identities=9% Similarity=0.150 Sum_probs=112.8
Q ss_pred EeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeec--CceeEEEEccCCCEEEEEeCCCcEEEEECC
Q 017314 167 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH--SNCNALAFSMDGQTIFSGHIDGNLRLWDIQ 244 (373)
Q Consensus 167 ~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~ 244 (373)
.+.+-.+.+.++++.|..+.+++.....+.|.-.+. .|..++.+... .....+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 455666679999999865666677777888877786 47777777654 457889998888888877678999999883
Q ss_pred CCe------eeEEEe--cc--cccceEEEEEcCCCCEEEEeeCCCeEEEEEccccc---eeeeee--e-c-CCeeecCee
Q 017314 245 TGK------LLSEVA--AH--SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE---VCGSLR--A-T-GNRVASNWS 307 (373)
Q Consensus 245 ~~~------~~~~~~--~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~---~~~~~~--~-~-~~~~~~~~~ 307 (373)
... ....+. .. ....+-.++|+|.++.|+.+-...-..+|.+.... ...... . . ........+
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 112221 11 22458899999998877777666666777765411 110000 0 0 111122344
Q ss_pred eeEECC-CCcEEEEEeCCCcEEEEEccCceEEEEec--c--C-----CccEEEEEEcCCCCcEEEEeCCCeEE
Q 017314 308 RSCISP-DESYVAAGSADGSVYIWSISKADIVRTLK--E--H-----TAPVLSCSWSGLGKPLASADKNGVVC 370 (373)
Q Consensus 308 ~~~~s~-~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~--~--h-----~~~V~~~~~s~~g~~l~s~s~dg~i~ 370 (373)
.+.++| .|.+++.......|.++| .+|+++..+. . | -..-..++|.++|+..++ |.-....
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy 245 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFY 245 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEE
Confidence 566776 467777888888999999 6677665443 2 1 124589999999964443 3443333
No 343
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.96 E-value=0.00024 Score=69.53 Aligned_cols=143 Identities=22% Similarity=0.307 Sum_probs=97.0
Q ss_pred CCCEEEEE-eCCCcEEEEEcCCCeeEEEeecCCCc-EEEEEEe----eCCCCEEEEEeCCCcEEEEEccCCe--eee---
Q 017314 141 DNRSVIAA-SSSNNLYVWDVNSGRVRHTLTGHTDK-VCAVDVS----KISSRHVVSAAYDRTLKVWDLHKGY--CVN--- 209 (373)
Q Consensus 141 ~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~----~~~~~~~~s~s~D~~i~vwd~~~~~--~~~--- 209 (373)
+.++|+.- ...+.++-.|++.|+.+.....|.+. |..++-. .......+.|-.+..+..||.+-.. ++.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33444443 34578999999999999999888765 5554321 1224456778889999999998532 221
Q ss_pred -EEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEc
Q 017314 210 -TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI 286 (373)
Q Consensus 210 -~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~ 286 (373)
.+.......|++-+.+| +||.|+.+|.||+||- .|+..++.-..-..+|..|..+.||++|++.+.. .+.+++.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 11222346778777776 6899999999999994 4443333333334799999999999998877555 4445554
No 344
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.00093 Score=64.25 Aligned_cols=107 Identities=9% Similarity=0.117 Sum_probs=82.7
Q ss_pred EEEcCCCCEEEEeeC----CCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEee
Q 017314 94 ILFEYNSARLISGGQ----DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT 169 (373)
Q Consensus 94 ~~~~~~~~~l~s~s~----D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 169 (373)
.+|+|...+++.++. -|+|-||- ++|++..... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+......
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~ 98 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE 98 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence 467888888877774 57888883 5565432211 12235678999988888888888999999988877776777
Q ss_pred cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcc
Q 017314 170 GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 203 (373)
Q Consensus 170 ~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~ 203 (373)
.|..++..+.|++ +++.++|+..-|.+.+|...
T Consensus 99 th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 99 THPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 8999999999998 68899999999999999764
No 345
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.93 E-value=0.0032 Score=51.75 Aligned_cols=202 Identities=14% Similarity=0.182 Sum_probs=106.6
Q ss_pred CCcEEEEEcCCCeeEE-EeecCCCcEEEEEEeeCCC---CEEEEEeCCCcEEEEEccCC--eeeeEEe------ecCcee
Q 017314 151 SNNLYVWDVNSGRVRH-TLTGHTDKVCAVDVSKISS---RHVVSAAYDRTLKVWDLHKG--YCVNTII------FHSNCN 218 (373)
Q Consensus 151 d~~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~---~~~~s~s~D~~i~vwd~~~~--~~~~~~~------~~~~~~ 218 (373)
.+.|.-||..+.+..+ ++.+.. +.++.+ |..+ .+.+.++.--.|--||.... ...++.. .....+
T Consensus 36 ag~v~r~D~~qn~v~ra~ie~p~--~ag~il-pv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~N 112 (310)
T KOG4499|consen 36 AGEVHRYDIEQNKVYRAKIEGPP--SAGFIL-PVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLN 112 (310)
T ss_pred cCceehhhhhhhheEEEEEecCc--ceeEEE-EecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHhcccc
Confidence 3445558877655432 333322 222222 2222 34444444444455774332 2222211 122356
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccc-------cceEEEEEcCCCCEE-EEeeCCCeEEEEE--ccc
Q 017314 219 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL-------AAVTSISLSRSGNII-LTSGRDNLHNLFD--IRS 288 (373)
Q Consensus 219 ~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l-~s~~~d~~i~~~d--~~~ 288 (373)
.-..+|+|++ +.|.+--.=-.+....+.+..-+..|+. .--+.++|+.+.+.+ +.-+.+-.+.-|| ..+
T Consensus 113 DgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~t 191 (310)
T KOG4499|consen 113 DGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPT 191 (310)
T ss_pred cCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCc
Confidence 6778999998 4554311111222222333333333332 234567888777654 4455566676677 333
Q ss_pred cce-----eeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCC
Q 017314 289 LEV-----CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGL 356 (373)
Q Consensus 289 ~~~-----~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~ 356 (373)
+.. +..++.....-...--..++..+|.+.++.-..|+|...|..+|+.+.+++-....|++|+|-..
T Consensus 192 G~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 192 GDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 221 11111110000000012456777888888888999999999999999999988999999999765
No 346
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.89 E-value=3.6e-05 Score=44.12 Aligned_cols=37 Identities=32% Similarity=0.574 Sum_probs=33.4
Q ss_pred ceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEe
Q 017314 80 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWD 116 (373)
Q Consensus 80 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd 116 (373)
+...+.+|...|.++.|.+++..+++++.|+.+++||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566778999999999999999999999999999996
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.88 E-value=0.0054 Score=57.05 Aligned_cols=221 Identities=13% Similarity=0.086 Sum_probs=106.0
Q ss_pred ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEE
Q 017314 87 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH 166 (373)
Q Consensus 87 h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 166 (373)
..-....+.++|+|+.++. +.||.-.|+.....+.. ..+.-.+..|.+. +.++.-...++|.|+.--+.+...
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k-----~~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNK-----AFGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEE-----EEEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT-
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccc-----ccCceeEEEEecC-ccEEEEECCCeEEEEEcCccccce
Confidence 3444678999999998888 55778777774332221 1234456778884 456666778899996422222212
Q ss_pred EeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 017314 167 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG 246 (373)
Q Consensus 167 ~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~ 246 (373)
.++-. ..+..+ .+ +..+...+. +.|.+||..++..++.+.... +..+.|+++|.+++-.+.+ .+.+++....
T Consensus 104 ~i~~~-~~~~~I--f~--G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 104 SIKLP-FSVEKI--FG--GNLLGVKSS-DFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp ----S-S-EEEE--E---SSSEEEEET-TEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred EEcCC-cccceE--Ec--CcEEEEECC-CCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 22211 123333 12 455555544 489999999999888876543 7899999999999887755 6777765432
Q ss_pred -----------eeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCC
Q 017314 247 -----------KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE 315 (373)
Q Consensus 247 -----------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 315 (373)
..+..+..- ...|.+..|..+ -++.+... .++.+ ..++ .+.+.....++ ..+.+.|..
T Consensus 176 ~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~d-~fiYtT~~--~lkYl--~~Ge-~~~i~~ld~~~----yllgy~~~~ 244 (443)
T PF04053_consen 176 AVAAIPEEGVEDAFELIHEI-SERIKSGCWVED-CFIYTTSN--HLKYL--VNGE-TGIIAHLDKPL----YLLGYLPKE 244 (443)
T ss_dssp HHHHBTTTB-GGGEEEEEEE--S--SEEEEETT-EEEEE-TT--EEEEE--ETTE-EEEEEE-SS------EEEEEETTT
T ss_pred hcccccccCchhceEEEEEe-cceeEEEEEEcC-EEEEEcCC--eEEEE--EcCC-cceEEEcCCce----EEEEEEccC
Confidence 012222211 256888888766 33444333 55442 2221 22222212111 112344545
Q ss_pred cEEEEEeCCCcEEEEEcc
Q 017314 316 SYVAAGSADGSVYIWSIS 333 (373)
Q Consensus 316 ~~l~sgs~Dg~i~iwd~~ 333 (373)
..+.....|+.|..+.+.
T Consensus 245 ~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 245 NRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TEEEEE-TT--EEEEE--
T ss_pred CEEEEEECCCCEEEEEEC
Confidence 566666666666666553
No 348
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.87 E-value=0.0018 Score=59.84 Aligned_cols=190 Identities=23% Similarity=0.241 Sum_probs=105.2
Q ss_pred EEeecCCCcEEEEEEeeCCCCEEEEEeCC---CcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEE-EEeCCCc--EE
Q 017314 166 HTLTGHTDKVCAVDVSKISSRHVVSAAYD---RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF-SGHIDGN--LR 239 (373)
Q Consensus 166 ~~~~~h~~~v~~~~~~~~~~~~~~s~s~D---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~-sg~~dg~--i~ 239 (373)
..+..-...+..-.|++.........-.. ..+.++|+.++..............-+|+|||+.|+ +...||. |.
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEE
Confidence 33333334445555666544433332222 358889998887665555455555678999999876 5566776 56
Q ss_pred EEECCCCeeeEEEecccccceEEEEEcCCCCEEEEe-eCCCeEEEE--EccccceeeeeeecCCeeecCeeeeEECCCCc
Q 017314 240 LWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTS-GRDNLHNLF--DIRSLEVCGSLRATGNRVASNWSRSCISPDES 316 (373)
Q Consensus 240 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~i~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 316 (373)
+.|+.++...+ +.... +.-+.=.|+|||+.++-. ++.+.-.+| +...... ..+........ .-.++|||+
T Consensus 266 ~~dl~~~~~~~-Lt~~~-gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~----~p~~SpdG~ 338 (425)
T COG0823 266 LMDLDGKNLPR-LTNGF-GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS----NPVWSPDGD 338 (425)
T ss_pred EEcCCCCccee-cccCC-ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc----CccCCCCCC
Confidence 66777666333 33322 333356789999977654 455554444 4433322 22222221111 134689999
Q ss_pred EEEEEeC-CCc--EEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEE
Q 017314 317 YVAAGSA-DGS--VYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASA 363 (373)
Q Consensus 317 ~l~sgs~-Dg~--i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~ 363 (373)
+|+..+. +|. |.+.++.++.....+. +......-.|.|+|+.+...
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEe
Confidence 9987664 344 6666666555444433 22223345666666655443
No 349
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.87 E-value=0.016 Score=51.06 Aligned_cols=258 Identities=14% Similarity=0.155 Sum_probs=142.2
Q ss_pred CcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCeeEEEeecCCC---cE-
Q 017314 110 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS----------SSNNLYVWDVNSGRVRHTLTGHTD---KV- 175 (373)
Q Consensus 110 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s----------~d~~i~iwd~~~~~~~~~~~~h~~---~v- 175 (373)
+.|.+.|..+++.+..+... -.-.+.++||++.+++++ ....|.+||..+..+...+.-... .+
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 47999999999887766532 233467899999888654 245699999999877664432211 11
Q ss_pred ---EEEEEeeCCCCEEEE--EeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECC-CCeee
Q 017314 176 ---CAVDVSKISSRHVVS--AAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ-TGKLL 249 (373)
Q Consensus 176 ---~~~~~~~~~~~~~~s--~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~-~~~~~ 249 (373)
....++. ++++++. .+---+|.|-|+..++.+.++..+. |..+=-++ ...+.+-+.||.+.-..+. .|+..
T Consensus 95 ~~~~~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 95 PYKNMFALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp --GGGEEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEE
T ss_pred ccccceEEcc-CCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-EEEEEecC-CCceEEEecCCceEEEEECCCCCEe
Confidence 1122222 3333332 2233456666666666655544332 22221122 2457788889999888887 45543
Q ss_pred EEEec----ccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccce--eeeee------ecCCeeecCeeeeEECCCC-c
Q 017314 250 SEVAA----HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV--CGSLR------ATGNRVASNWSRSCISPDE-S 316 (373)
Q Consensus 250 ~~~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~--~~~~~------~~~~~~~~~~~~~~~s~~~-~ 316 (373)
..... .....+..=.++..+..++=-+.+|.+.-.|+..... ...+. .........|...++++.. +
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 22111 0001111222333444444456777777766654321 11111 1123334456667777644 4
Q ss_pred EEEEE--eCCC-------cEEEEEccCceEEEEeccCCccEEEEEEcCCCC-cEEEEe-CCCeEEEcC
Q 017314 317 YVAAG--SADG-------SVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK-PLASAD-KNGVVCVWT 373 (373)
Q Consensus 317 ~l~sg--s~Dg-------~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~-~l~s~s-~dg~i~iW~ 373 (373)
+.+.- +.+| .|.++|+.+++.+..+.- ..++.+++.+.+.+ +|.+.+ .++.|.+||
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 43332 2232 488889999999988763 24678999999887 565544 578998875
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.80 E-value=0.017 Score=49.23 Aligned_cols=196 Identities=11% Similarity=0.208 Sum_probs=106.5
Q ss_pred EecCccCcEEEEEEcCCCCEE-EEeeCCCcEEEEeCCCCceeeecccc-ccceEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 017314 83 KINAHEGGCASILFEYNSARL-ISGGQDKSIKLWDTNTGSLSSTLYGC-LGSVLDLAITHDNRSVIAASSSNNLYVWDVN 160 (373)
Q Consensus 83 ~~~~h~~~v~~~~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 160 (373)
.+.+-...++++.|+|+.+.| +.....+.|...+. +|+.+..+.-. .+..-.+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 445555679999999986655 55556778888886 46666655322 3456678888888777776678999998884
Q ss_pred CCe------eEEEee-----cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccC---CeeeeEEe---------ecCce
Q 017314 161 SGR------VRHTLT-----GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK---GYCVNTII---------FHSNC 217 (373)
Q Consensus 161 ~~~------~~~~~~-----~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~---~~~~~~~~---------~~~~~ 217 (373)
... ....+. .+...+-.+++.+... .++.+-...-.+++.+.. ........ .-...
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 321 111121 2445578999988544 454555666667776653 21111111 11246
Q ss_pred eEEEEccCC-CEEEEEeCCCcEEEEECCCCeeeEEEeccc--------ccceEEEEEcCCCCEEEEeeCCCeEE
Q 017314 218 NALAFSMDG-QTIFSGHIDGNLRLWDIQTGKLLSEVAAHS--------LAAVTSISLSRSGNIILTSGRDNLHN 282 (373)
Q Consensus 218 ~~~~~~~~g-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~s~~~d~~i~ 282 (373)
.+++++|.. .+++-...+..|-.+| ..|+.+..+.-.. ...--.|+|+++|++.+++ .-+...
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy 245 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFY 245 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEE
Confidence 789999964 4555677788888898 5677665543321 1346789999999766655 444433
No 351
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.73 E-value=0.048 Score=52.34 Aligned_cols=189 Identities=14% Similarity=0.179 Sum_probs=113.8
Q ss_pred CCEEEEeeCCCcEEEEeCCCCceeeeccccc-cceE----------EEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEe
Q 017314 100 SARLISGGQDKSIKLWDTNTGSLSSTLYGCL-GSVL----------DLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL 168 (373)
Q Consensus 100 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~v~----------~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 168 (373)
+..|+.++.++.|.-.|..+|+.+=.+.... ..+. .+++ .+..++.++.|+.+.-.|..+|+.+-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 5677778888899999999997754432111 0111 1122 2356778889999999999999987655
Q ss_pred ec--CCC--cEEEEEEeeCCCCEEEEEe------CCCcEEEEEccCCeeeeEEeecC-----------------------
Q 017314 169 TG--HTD--KVCAVDVSKISSRHVVSAA------YDRTLKVWDLHKGYCVNTIIFHS----------------------- 215 (373)
Q Consensus 169 ~~--h~~--~v~~~~~~~~~~~~~~s~s------~D~~i~vwd~~~~~~~~~~~~~~----------------------- 215 (373)
.. +.. .+.+--.- ....++.++ .++.|.-+|.++|+.+-.+..-.
T Consensus 147 ~~~~~~~~~~~tssP~v--~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLV--VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred ccccccccccccCCcEE--ECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 42 111 11110000 123444443 36889999999887654432110
Q ss_pred ---------ce-eEEEEccCCCEEEEEeC-----CC-----------cEEEEECCCCeeeEEEeccc--------ccceE
Q 017314 216 ---------NC-NALAFSMDGQTIFSGHI-----DG-----------NLRLWDIQTGKLLSEVAAHS--------LAAVT 261 (373)
Q Consensus 216 ---------~~-~~~~~~~~g~~l~sg~~-----dg-----------~i~iwd~~~~~~~~~~~~~~--------~~~v~ 261 (373)
.+ ...++.|...+++.+.. ++ .|--.|+++|+....+...+ .....
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 00 13466666666665542 12 56677889998876664421 01222
Q ss_pred EEEEcCCCC---EEEEeeCCCeEEEEEcccccee
Q 017314 262 SISLSRSGN---IILTSGRDNLHNLFDIRSLEVC 292 (373)
Q Consensus 262 ~~~~~~~~~---~l~s~~~d~~i~~~d~~~~~~~ 292 (373)
-+.+..+|+ .++.+..++.+.++|-++++.+
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 233445666 7788999999999998887764
No 352
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.73 E-value=0.031 Score=50.12 Aligned_cols=172 Identities=18% Similarity=0.206 Sum_probs=102.1
Q ss_pred cEEEEeCCCCceeeecccc-ccceE---EEEEcCC----CCEEEEEeC----------CCcEEEEEcCCC-----ee--E
Q 017314 111 SIKLWDTNTGSLSSTLYGC-LGSVL---DLAITHD----NRSVIAASS----------SNNLYVWDVNSG-----RV--R 165 (373)
Q Consensus 111 ~v~iwd~~~~~~~~~~~~~-~~~v~---~~~~~~~----~~~l~s~s~----------d~~i~iwd~~~~-----~~--~ 165 (373)
.|++.|..+...+.++.-. ...++ .+.+..+ ..+++.|.. .|.|.++++... +. +
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5677777666554433221 12233 3334432 345665543 278999999884 22 2
Q ss_pred EEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCe-eeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECC
Q 017314 166 HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-CVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ 244 (373)
Q Consensus 166 ~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~ 244 (373)
.. ....++|++++.. .+ .++.+ ..+.|.+|++.... .......+.....++....+++++.|.....+.++...
T Consensus 83 ~~-~~~~g~V~ai~~~--~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 83 HS-TEVKGPVTAICSF--NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EE-EEESS-EEEEEEE--TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred EE-EeecCcceEhhhh--CC-EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence 22 2346788888654 34 44433 35889999998777 55544444444455555557799999988888877443
Q ss_pred C-CeeeEEEe-cccccceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q 017314 245 T-GKLLSEVA-AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR 287 (373)
Q Consensus 245 ~-~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~ 287 (373)
. +..+..+. ......++++.+-++++.++.+..++.+.++...
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 2 22233332 2223568888888666799999999999988865
No 353
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.00027 Score=66.37 Aligned_cols=110 Identities=25% Similarity=0.332 Sum_probs=68.3
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeee
Q 017314 216 NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 295 (373)
Q Consensus 216 ~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~ 295 (373)
.+.--+++..+.+++.|+.-|.+.+|+-..++....-.......+..++
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~------------------------------- 83 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRS------------------------------- 83 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEE-------------------------------
Confidence 3444566778999999999999999987766543221111112233333
Q ss_pred eecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceE-----EEEe-ccCCccEEEEEEcCCCCcEEEEeCCCeE
Q 017314 296 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI-----VRTL-KEHTAPVLSCSWSGLGKPLASADKNGVV 369 (373)
Q Consensus 296 ~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~-----~~~l-~~h~~~V~~~~~s~~g~~l~s~s~dg~i 369 (373)
++++..++|.|+..|.|.++-+..+.+ +..+ +.|...|++++||+++..+.+|+..|.|
T Consensus 84 ---------------vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv 148 (726)
T KOG3621|consen 84 ---------------VSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKV 148 (726)
T ss_pred ---------------ecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceE
Confidence 455555555555555555555443211 0111 1277888999999999999999888887
Q ss_pred EE
Q 017314 370 CV 371 (373)
Q Consensus 370 ~i 371 (373)
..
T Consensus 149 ~~ 150 (726)
T KOG3621|consen 149 VL 150 (726)
T ss_pred EE
Confidence 53
No 354
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.0015 Score=61.61 Aligned_cols=113 Identities=20% Similarity=0.343 Sum_probs=80.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEE-EeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeE
Q 017314 132 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH-TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT 210 (373)
Q Consensus 132 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~ 210 (373)
.|.--+++..+.+++.|+.-|.+++|+-..++... ...+-...+....+++ ...+++.|+..|.|.++-+..+.+...
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCCcc
Confidence 33334566778899999999999999988776433 2223333344445555 466778888889999998876433222
Q ss_pred Ee-------ecCceeEEEEccCCCEEEEEeCCCcEEEEECCC
Q 017314 211 II-------FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT 245 (373)
Q Consensus 211 ~~-------~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~ 245 (373)
.. +...|++++|++|+..+++|...|+|.+-.+.+
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11 123589999999999999999999998887766
No 355
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.67 E-value=0.034 Score=49.04 Aligned_cols=242 Identities=14% Similarity=0.188 Sum_probs=136.6
Q ss_pred EEEEcCCCCEEEEeeC----------CCcEEEEeCCCCceeeecccc---c----cceEEEEEcCCCCEEEEEeC--CCc
Q 017314 93 SILFEYNSARLISGGQ----------DKSIKLWDTNTGSLSSTLYGC---L----GSVLDLAITHDNRSVIAASS--SNN 153 (373)
Q Consensus 93 ~~~~~~~~~~l~s~s~----------D~~v~iwd~~~~~~~~~~~~~---~----~~v~~~~~~~~~~~l~s~s~--d~~ 153 (373)
.+.++||++.+++++. .-.|.+||..+-.....+.-. . ......+++.|+++++.... -.+
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 4668999999887663 346899999987655432211 1 12233578889988776543 457
Q ss_pred EEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcc-CCeeeeEE--eecCc----eeEEEEccCC
Q 017314 154 LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH-KGYCVNTI--IFHSN----CNALAFSMDG 226 (373)
Q Consensus 154 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~-~~~~~~~~--~~~~~----~~~~~~~~~g 226 (373)
|.|-|+...+.+..+.-- . |...-|....-+.+-+.||++-...+. .|+...+. .++.. ...-++...+
T Consensus 120 VtVVDl~~~kvv~ei~~P--G--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~ 195 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTP--G--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG 195 (342)
T ss_dssp EEEEETTTTEEEEEEEGT--S--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred EEEEECCCCceeeeecCC--C--EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence 888888888877666421 1 222234445678899999999988886 44443221 11111 1222334444
Q ss_pred CEEEEEeCCCcEEEEECCCCeeeE--EEeccc---------ccceEEEEEcCCCCEEEEe---eCCC-------eEEEEE
Q 017314 227 QTIFSGHIDGNLRLWDIQTGKLLS--EVAAHS---------LAAVTSISLSRSGNIILTS---GRDN-------LHNLFD 285 (373)
Q Consensus 227 ~~l~sg~~dg~i~iwd~~~~~~~~--~~~~~~---------~~~v~~~~~~~~~~~l~s~---~~d~-------~i~~~d 285 (373)
..++=-+.+|.|+--|+....... .+.... .+.-.-+++++..+.|..- +.++ .|-++|
T Consensus 196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 445446788999988886554221 111100 0122346666655444331 1122 355677
Q ss_pred ccccceeeeeeecCCeeecCeeeeEECCCCc-EEEE-EeCCCcEEEEEccCceEEEEecc
Q 017314 286 IRSLEVCGSLRATGNRVASNWSRSCISPDES-YVAA-GSADGSVYIWSISKADIVRTLKE 343 (373)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s-gs~Dg~i~iwd~~~~~~~~~l~~ 343 (373)
+.+.+.+..+...... ..+.++.+.+ +|.+ ...++.+.+||..+|+.++.+.+
T Consensus 276 ~~t~krv~Ri~l~~~~-----~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 276 LKTHKRVARIPLEHPI-----DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp TTTTEEEEEEEEEEEE-----SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCCCeEEEEEeCCCcc-----ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 8887777776543221 1245666554 5544 45689999999999999988764
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.67 E-value=0.039 Score=49.53 Aligned_cols=211 Identities=15% Similarity=0.157 Sum_probs=114.5
Q ss_pred cEEEEEcCCCeeEEEeecCC-CcEEEEEEeeCC------CCEEEEEeC----------CCcEEEEEccCC-----e--ee
Q 017314 153 NLYVWDVNSGRVRHTLTGHT-DKVCAVDVSKIS------SRHVVSAAY----------DRTLKVWDLHKG-----Y--CV 208 (373)
Q Consensus 153 ~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~------~~~~~s~s~----------D~~i~vwd~~~~-----~--~~ 208 (373)
.|++.|..+.+.+.++.-.. ..+.++...... ..+++.|.. .|.|.++++... + .+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 57788887776665554322 223444322211 456665432 288999999884 2 22
Q ss_pred eEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCe-eeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q 017314 209 NTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR 287 (373)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~ 287 (373)
........+.+++-- +|. |+.+. .+.|.+|++...+ ....-..+....++++... +++++.+..-..+.++..+
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred EEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence 333445667776654 444 44443 4789999998877 5444433333455555554 5688888887777777544
Q ss_pred cc-ceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccC-------c--eEEEEeccC-CccEEEE---EE
Q 017314 288 SL-EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK-------A--DIVRTLKEH-TAPVLSC---SW 353 (373)
Q Consensus 288 ~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~-------~--~~~~~l~~h-~~~V~~~---~~ 353 (373)
.. .....+....... ....+++-+++..++.+..+|.|.++.... + .+.....-| ...|+++ +.
T Consensus 158 ~~~~~l~~va~d~~~~--~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 158 EENNKLILVARDYQPR--WVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp TTTE-EEEEEEESS-B--EEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred ccCCEEEEEEecCCCc--cEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 31 1111221111111 112233434556899999999999998863 2 233222233 3457777 55
Q ss_pred cC--CCC------cEEEEeCCCeEE
Q 017314 354 SG--LGK------PLASADKNGVVC 370 (373)
Q Consensus 354 s~--~g~------~l~s~s~dg~i~ 370 (373)
.| .+. .++.++.+|.|.
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig 260 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIG 260 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EE
T ss_pred eecCCCCcccccceEEEEecCCEEE
Confidence 55 222 388888999886
No 357
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.65 E-value=0.021 Score=52.47 Aligned_cols=195 Identities=15% Similarity=0.239 Sum_probs=109.1
Q ss_pred EEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeee--ccc------cccceEEEEEc-----CCC---CEE
Q 017314 82 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST--LYG------CLGSVLDLAIT-----HDN---RSV 145 (373)
Q Consensus 82 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~------~~~~v~~~~~~-----~~~---~~l 145 (373)
..+....++|++++.| |=..++.|..+|++.|.|+.....+.. +.. ....++++.|+ .|+ -.+
T Consensus 80 ~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 80 TLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp EEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred hheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 3455668999999997 556999999999999999987665543 111 12356667664 333 367
Q ss_pred EEEeCCCcEEEEEcC--C-Ce----eEEEeecCCCcEEEEEEeeCC--------------------CCEEEEEeCCCcEE
Q 017314 146 IAASSSNNLYVWDVN--S-GR----VRHTLTGHTDKVCAVDVSKIS--------------------SRHVVSAAYDRTLK 198 (373)
Q Consensus 146 ~s~s~d~~i~iwd~~--~-~~----~~~~~~~h~~~v~~~~~~~~~--------------------~~~~~s~s~D~~i~ 198 (373)
+.|...|.+.+|.+. . +. .......+.++|..+..-..+ -+.++....+..+|
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 889999999999764 1 21 122223456666655432111 12244445578899
Q ss_pred EEEccCCeeeeEEeecC--ceeEEEEc-----cCCCEEEEEeCCCcEEEEECCCCeeeEEEeccc---ccceEEEEEcCC
Q 017314 199 VWDLHKGYCVNTIIFHS--NCNALAFS-----MDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS---LAAVTSISLSRS 268 (373)
Q Consensus 199 vwd~~~~~~~~~~~~~~--~~~~~~~~-----~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~ 268 (373)
++...+.+..+... .. .+..+++- ..+..|++-..+|.|+++.+...+.+..+.... ...+....++++
T Consensus 239 v~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~ 317 (395)
T PF08596_consen 239 VFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRN 317 (395)
T ss_dssp EE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TT
T ss_pred EEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCC
Confidence 99988776655543 22 23444452 356678888899999999999988887766532 123445677888
Q ss_pred CCEEEEeeCC
Q 017314 269 GNIILTSGRD 278 (373)
Q Consensus 269 ~~~l~s~~~d 278 (373)
|..++-.+..
T Consensus 318 Gdi~~~~gps 327 (395)
T PF08596_consen 318 GDIFYWTGPS 327 (395)
T ss_dssp S-EEEE-SSS
T ss_pred CCEEEEeCcc
Confidence 8877666544
No 358
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.64 E-value=0.028 Score=47.13 Aligned_cols=121 Identities=17% Similarity=0.187 Sum_probs=83.6
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCcee-EEE
Q 017314 143 RSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCN-ALA 221 (373)
Q Consensus 143 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~-~~~ 221 (373)
.+++.||..+.+.--|..+|+....-. -...+.+-+.- -+++++-|...|.+.+.+..+|.....+..-..+. ...
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 567788888888888888887654321 11223222221 25679999999999999999997666555444432 244
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcC
Q 017314 222 FSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR 267 (373)
Q Consensus 222 ~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 267 (373)
..+++..++.|+.|++.+..|.++...+.+..... ....+=++.|
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG-~~f~sP~i~~ 145 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG-GTFVSPVIAP 145 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCC-ceeccceecC
Confidence 67899999999999999999999988887765442 2233334455
No 359
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0013 Score=60.13 Aligned_cols=132 Identities=16% Similarity=0.199 Sum_probs=87.8
Q ss_pred EEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCE-------EEEeeCCCeEEEEEccccce--eeeeeecC
Q 017314 229 IFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNI-------ILTSGRDNLHNLFDIRSLEV--CGSLRATG 299 (373)
Q Consensus 229 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~s~~~d~~i~~~d~~~~~~--~~~~~~~~ 299 (373)
+.++.....++-.|+..|+.+.+...+. .|+-+.+.|+.+. -+.|-.|+.+.-||.|-... +.-...+.
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~--di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFED--DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccC--CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 3456666778999999999999988875 3788888887642 23455667777888873221 11111222
Q ss_pred CeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEE-EEeccCCccEEEEEEcCCCCcEEEEe
Q 017314 300 NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV-RTLKEHTAPVLSCSWSGLGKPLASAD 364 (373)
Q Consensus 300 ~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~-~~l~~h~~~V~~~~~s~~g~~l~s~s 364 (373)
......+++.+- -...|||.||.+|.||+||- .+... ..|.+-..+|..|..+.+|++|+...
T Consensus 427 y~~k~nFsc~aT-T~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 427 YSTKNNFSCFAT-TESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred cccccccceeee-cCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence 111222322222 34459999999999999997 44433 34677888999999999999876554
No 360
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.56 E-value=0.061 Score=48.98 Aligned_cols=220 Identities=18% Similarity=0.220 Sum_probs=112.0
Q ss_pred cCCCCEEEEE---------eCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeee
Q 017314 139 THDNRSVIAA---------SSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN 209 (373)
Q Consensus 139 ~~~~~~l~s~---------s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~ 209 (373)
|||+++++.. +..+.+.|||+++++....... ...+....|+|. ++.++-.. ++.|.+++..++...+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SS-STEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecC-CCeeEEEe-cCceEEEECCCCCeEE
Confidence 4666665553 2345789999999875544333 556777889884 66666554 6789999887664332
Q ss_pred EEeec------------------CceeEEEEccCCCEEEEEeC-CCcEEEE-----------------------------
Q 017314 210 TIIFH------------------SNCNALAFSMDGQTIFSGHI-DGNLRLW----------------------------- 241 (373)
Q Consensus 210 ~~~~~------------------~~~~~~~~~~~g~~l~sg~~-dg~i~iw----------------------------- 241 (373)
--... ..-..+-|||||++|+.... +..|+.+
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~ 157 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR 157 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence 11100 11256889999998875433 3333333
Q ss_pred ------ECCCCeeeE-EEe---cccccceEEEEEcCCCCEEE--EeeCCC---eEEEEEccccceeeeeeecCCeeecCe
Q 017314 242 ------DIQTGKLLS-EVA---AHSLAAVTSISLSRSGNIIL--TSGRDN---LHNLFDIRSLEVCGSLRATGNRVASNW 306 (373)
Q Consensus 242 ------d~~~~~~~~-~~~---~~~~~~v~~~~~~~~~~~l~--s~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~~ 306 (373)
|+.+++... ... .....-+..+.|.++++.|+ ..+++. .+.++|..++............-....
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~ 237 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY 237 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence 333332211 000 01123477788888888333 234443 344556655433222221111111111
Q ss_pred eeeEEC-CCC-cEEEEEeCCCc--EEEEEccCceEEEEeccCCccEEE-EEEcCCCCcEEE
Q 017314 307 SRSCIS-PDE-SYVAAGSADGS--VYIWSISKADIVRTLKEHTAPVLS-CSWSGLGKPLAS 362 (373)
Q Consensus 307 ~~~~~s-~~~-~~l~sgs~Dg~--i~iwd~~~~~~~~~l~~h~~~V~~-~~~s~~g~~l~s 362 (373)
....+. +++ .+|.....||. |++.+...+. ...+....-.|.. +.|+++++.|..
T Consensus 238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf 297 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYF 297 (353)
T ss_dssp SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEE
T ss_pred cccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEE
Confidence 123333 444 55555567775 4444555554 4456555666754 778998876543
No 361
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.55 E-value=0.023 Score=52.71 Aligned_cols=155 Identities=18% Similarity=0.237 Sum_probs=91.7
Q ss_pred cccceEEEEEcCCCCEEEEEe---CC-CcEEEEEcCCCeeEE--EeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE--
Q 017314 129 CLGSVLDLAITHDNRSVIAAS---SS-NNLYVWDVNSGRVRH--TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW-- 200 (373)
Q Consensus 129 ~~~~v~~~~~~~~~~~l~s~s---~d-~~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vw-- 200 (373)
....+..-+|+|++..++-.+ .. ..+.++|+++++... .+.++.. .-.|+|.....+++...|+...+|
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEE
Confidence 344566678899998755432 22 358999999886443 3344432 345778666666777888876655
Q ss_pred EccCCeeeeEEeecCc-eeEEEEccCCCEEE-EEeCCCc--EEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEee
Q 017314 201 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIF-SGHIDGN--LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG 276 (373)
Q Consensus 201 d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~-sg~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 276 (373)
|+..+...+ +..... -..=.|+|||++++ +.+..|. |.+.|+..+.. ..++..... -..-.++|+|++++-.+
T Consensus 268 dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~-~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 268 DLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG-NSNPVWSPDGDKIVFES 344 (425)
T ss_pred cCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC-CcCccCCCCCCEEEEEe
Confidence 666555322 222111 22456899999887 4445554 55566665544 334333212 22667899999988877
Q ss_pred CC-Ce--EEEEEcccc
Q 017314 277 RD-NL--HNLFDIRSL 289 (373)
Q Consensus 277 ~d-~~--i~~~d~~~~ 289 (373)
.. +. +.+.|+.+.
T Consensus 345 ~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 345 SSGGQWDIDKNDLASG 360 (425)
T ss_pred ccCCceeeEEeccCCC
Confidence 43 33 455555443
No 362
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.53 E-value=0.077 Score=49.27 Aligned_cols=114 Identities=18% Similarity=0.234 Sum_probs=66.9
Q ss_pred cCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceee
Q 017314 214 HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG 293 (373)
Q Consensus 214 ~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~ 293 (373)
...+..+++||+|++++.-..+|.+.+.+..-.+...++..........+.|. |.|..+..|. .....++
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WC---------G~dav~l~~~-~~l~lvg 285 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWC---------GNDAVVLSWE-DELLLVG 285 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEE---------CCCcEEEEeC-CEEEEEC
Confidence 35688999999999999988999999988766666665555433344455554 4444444442 1111111
Q ss_pred eeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccE
Q 017314 294 SLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPV 348 (373)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V 348 (373)
..+.. ..+..++..++..-.|| |||..-..-+.++........|
T Consensus 286 ---~~~~~-------~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~~~~~i 329 (410)
T PF04841_consen 286 ---PDGDS-------ISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVPDSTENI 329 (410)
T ss_pred ---CCCCc-------eEEeccCceEEeccCCc-eEEEeCCceEEEEECCHHHHHH
Confidence 11111 12334455555666677 8888766666666654433333
No 363
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.52 E-value=0.00012 Score=59.70 Aligned_cols=142 Identities=13% Similarity=0.154 Sum_probs=84.6
Q ss_pred EEEEEeCCCcEEEEEcCCCeeE-EEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCC-eeeeEEeecCc--eeE
Q 017314 144 SVIAASSSNNLYVWDVNSGRVR-HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFHSN--CNA 219 (373)
Q Consensus 144 ~l~s~s~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~-~~~~~~~~~~~--~~~ 219 (373)
.+...+.|++|+-+++..-+.- +.-.-|... ..+ +.....++.|+.||.|.+|+..-. .....+....+ ...
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v---~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG-QRV---VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc-eee---cccCceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 3556677888887776532210 000111111 111 123456888999999999987521 11111111111 122
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEe--eCCCeEEEEEcccc
Q 017314 220 LAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTS--GRDNLHNLFDIRSL 289 (373)
Q Consensus 220 ~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~~d~~i~~~d~~~~ 289 (373)
+....++.+..+++.||.||.|++..++.+-....|...++.....+..+++++.+ |.|..++.|++...
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 33333556788999999999999998887766655554556666666667777777 77888888887653
No 364
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.49 E-value=0.086 Score=48.95 Aligned_cols=191 Identities=13% Similarity=0.242 Sum_probs=99.6
Q ss_pred cEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC-----cee-E----EEE
Q 017314 153 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-----NCN-A----LAF 222 (373)
Q Consensus 153 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~-----~~~-~----~~~ 222 (373)
.|+||+.. |+.+.++.--.+.+.++.|.. ...|+.-..||+++++|+.... ++.... .+. + ..+
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCCCce---eechhhhccccCccccccccccc
Confidence 47888753 455555554447888888865 4567788899999999986433 222111 111 1 122
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCe-eeEEE---ec-----ccccceEE-EEEcCCCCEEEEeeCCCeEEEEEcccccee
Q 017314 223 SMDGQTIFSGHIDGNLRLWDIQTGK-LLSEV---AA-----HSLAAVTS-ISLSRSGNIILTSGRDNLHNLFDIRSLEVC 292 (373)
Q Consensus 223 ~~~g~~l~sg~~dg~i~iwd~~~~~-~~~~~---~~-----~~~~~v~~-~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~ 292 (373)
..+|-.+++ .++.+.+..-.... ....+ .. +....... ..++.+....+....+..+.+.+-.....
T Consensus 136 ~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~- 212 (410)
T PF04841_consen 136 YKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ- 212 (410)
T ss_pred CCCCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-
Confidence 224433333 33444333221111 11111 00 00001111 23444444444444455555443322111
Q ss_pred eeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccC-CccEEEEEEcCCCCc
Q 017314 293 GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEH-TAPVLSCSWSGLGKP 359 (373)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h-~~~V~~~~~s~~g~~ 359 (373)
+. ....+..+++||+|++||.-..+|.+.|.+..-.+.+..+.-. ..+...+.|..+...
T Consensus 213 --i~-----~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 213 --ID-----SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred --cc-----CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence 10 1124566889999999999999999999886655555554432 334567777765443
No 365
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.48 E-value=0.053 Score=46.22 Aligned_cols=180 Identities=15% Similarity=0.123 Sum_probs=112.4
Q ss_pred EEEEEcCCCCEEEEeeCCC--cEEEEeCCCCceeeeccccccc-eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEe
Q 017314 92 ASILFEYNSARLISGGQDK--SIKLWDTNTGSLSSTLYGCLGS-VLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL 168 (373)
Q Consensus 92 ~~~~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 168 (373)
..+.|..+|.++-|.|.-| .|+.+|+.+++......-...- --.+++. +++...-.-.++...+||.++-+.+.++
T Consensus 48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~ 126 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTF 126 (264)
T ss_dssp EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEE
Confidence 4667777888888888765 7999999999875443211110 0112222 2333444556789999999999888887
Q ss_pred ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC------ceeEEEEccCCCEEEEEeCCCcEEEEE
Q 017314 169 TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS------NCNALAFSMDGQTIFSGHIDGNLRLWD 242 (373)
Q Consensus 169 ~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~~g~~l~sg~~dg~i~iwd 242 (373)
.-. ..=+.++. ++..++.......+..+|..+-...+++.... ..|.+.+- +|...+-.-....|-..|
T Consensus 127 ~y~-~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id 201 (264)
T PF05096_consen 127 PYP-GEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID 201 (264)
T ss_dssp E-S-SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred ecC-CcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence 643 45566653 34456555556789999988766666654432 35667775 677666677777888899
Q ss_pred CCCCeeeEEEecc--------------cccceEEEEEcCCCCEEEEeeC
Q 017314 243 IQTGKLLSEVAAH--------------SLAAVTSISLSRSGNIILTSGR 277 (373)
Q Consensus 243 ~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~s~~~ 277 (373)
..+|++...+... .....+.|+++|..+.|...|.
T Consensus 202 p~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 202 PETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp TTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 9999988766321 1246889999887775554443
No 366
>PHA02713 hypothetical protein; Provisional
Probab=97.41 E-value=0.022 Score=55.06 Aligned_cols=217 Identities=12% Similarity=0.079 Sum_probs=104.6
Q ss_pred CcEEEEeCCCCcee--eeccccccceEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCeeEEE--eecCCCcEEEEE
Q 017314 110 KSIKLWDTNTGSLS--STLYGCLGSVLDLAITHDNRSVIAASSS------NNLYVWDVNSGRVRHT--LTGHTDKVCAVD 179 (373)
Q Consensus 110 ~~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~s~d------~~i~iwd~~~~~~~~~--~~~h~~~v~~~~ 179 (373)
..+..||..+++-. ..+...... .+++. .++...+.|+.+ ..+..||+.+..-... +....... +++
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~ 348 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA 348 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE
Confidence 35778888776432 122111111 12222 356666677653 3477888877642211 11001111 122
Q ss_pred EeeCCCCEEEEEeCCC-----cEEEEEccCCeeeeEEeecCc-eeEEEEccCCCEEEEEeCCC-----------------
Q 017314 180 VSKISSRHVVSAAYDR-----TLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDG----------------- 236 (373)
Q Consensus 180 ~~~~~~~~~~s~s~D~-----~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~sg~~dg----------------- 236 (373)
. .++...+.||.++ ++..||..++.....-..+.. ....+..-+|...+.|+.++
T Consensus 349 ~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 349 V--IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred E--ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccc
Confidence 1 2456667777654 477899877643221111111 11111223677777777653
Q ss_pred ------cEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCC------CeEEEEEccc---cceeeeeeecCCe
Q 017314 237 ------NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD------NLHNLFDIRS---LEVCGSLRATGNR 301 (373)
Q Consensus 237 ------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------~~i~~~d~~~---~~~~~~~~~~~~~ 301 (373)
.+..||..+.+-...-.... .....-...-++++.+.||.+ ..+..||..+ +..+..+......
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~-~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWT-GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCc-ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 47778887765322111111 111111112246666777654 2356788765 2222322211111
Q ss_pred eecCeeeeEECCCCcEEEEEeCCC--cEEEEEccCceEE
Q 017314 302 VASNWSRSCISPDESYVAAGSADG--SVYIWSISKADIV 338 (373)
Q Consensus 302 ~~~~~~~~~~s~~~~~l~sgs~Dg--~i~iwd~~~~~~~ 338 (373)
. ....-+|...+.|+.|| .+-.||+.+.+-.
T Consensus 506 ----~--~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 506 ----L--HTILHDNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred ----c--eeEEECCEEEEEeeecceeehhhcCccccccc
Confidence 1 11223788889999888 6777777665443
No 367
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.41 E-value=0.026 Score=41.07 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=63.9
Q ss_pred EEEEEEeeC---CCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEE
Q 017314 175 VCAVDVSKI---SSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE 251 (373)
Q Consensus 175 v~~~~~~~~---~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~ 251 (373)
|+++++... ..+.|+.||.|..||+|+- ...+..+.....+.+++-... ..++-+..+|+|-+|+-.. .+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeee
Confidence 455555443 3478999999999999974 356677777788888877765 5677888899999887532 2333
Q ss_pred EecccccceEEEEE-cCC--CC-EEEEeeCCCeE
Q 017314 252 VAAHSLAAVTSISL-SRS--GN-IILTSGRDNLH 281 (373)
Q Consensus 252 ~~~~~~~~v~~~~~-~~~--~~-~l~s~~~d~~i 281 (373)
+... ..++++.+ +.+ |. -|++|=.+|.+
T Consensus 77 iKSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 77 IKSK--NQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred eccC--CCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 3322 23444433 333 22 46666566554
No 368
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.38 E-value=0.013 Score=42.55 Aligned_cols=101 Identities=11% Similarity=0.189 Sum_probs=64.2
Q ss_pred EEEEEEcC---CC-CEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEE
Q 017314 91 CASILFEY---NS-ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH 166 (373)
Q Consensus 91 v~~~~~~~---~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 166 (373)
|+++++.. || +.|+.||.|..||+|+-+ ..+..+.. ...|+++.-... ..++.+-.+|+|-+|+-. +.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 45565542 32 589999999999999754 44444432 456777766555 678899999999999752 2233
Q ss_pred EeecCCCcEEEEEEeeCC---CCEEEEEeCCCcEE
Q 017314 167 TLTGHTDKVCAVDVSKIS---SRHVVSAAYDRTLK 198 (373)
Q Consensus 167 ~~~~h~~~v~~~~~~~~~---~~~~~s~s~D~~i~ 198 (373)
..+. +..+.++.+...+ ...|++|-.+|.|-
T Consensus 76 RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3332 2335555544322 23688888887663
No 369
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.37 E-value=0.03 Score=54.19 Aligned_cols=229 Identities=13% Similarity=0.173 Sum_probs=113.6
Q ss_pred cCCCCEEEEeeCC------CcEEEEeCCCCceee--eccccccceEEEEEcCCCCEEEEEeCC------CcEEEEEcCCC
Q 017314 97 EYNSARLISGGQD------KSIKLWDTNTGSLSS--TLYGCLGSVLDLAITHDNRSVIAASSS------NNLYVWDVNSG 162 (373)
Q Consensus 97 ~~~~~~l~s~s~D------~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~s~d------~~i~iwd~~~~ 162 (373)
+..+..++.||.+ .+|..+|..++.-.. .+.. .-.-.++++ .++...++|+.| .++..||..++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~-~r~~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS-PRCRVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc-ccccccEEE-ECCEEEEEccccCCCcccceEEEecCCCC
Confidence 3345677788877 468889988773321 1111 111222333 345677788888 35778888776
Q ss_pred eeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCc-----EEEEEccCCeeeeEEeecCce-eEEEEccCCCEEEEEeCCC
Q 017314 163 RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRT-----LKVWDLHKGYCVNTIIFHSNC-NALAFSMDGQTIFSGHIDG 236 (373)
Q Consensus 163 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~-----i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~sg~~dg 236 (373)
+=.. +..=..+=..+......+...+.|+.||. +-.||..+......-...... ..-...-+|...+.|+.|+
T Consensus 360 ~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 360 QWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred ceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC
Confidence 5222 11000011111122235667788988865 556777655422111111111 1122233677777887655
Q ss_pred ------cEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCC-----eEEEEEccccceeee--eeecCCeee
Q 017314 237 ------NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN-----LHNLFDIRSLEVCGS--LRATGNRVA 303 (373)
Q Consensus 237 ------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-----~i~~~d~~~~~~~~~--~~~~~~~~~ 303 (373)
++..||..+++....-.....-.-..++ .-++.+.+.||.|+ .+..||..+.+.... .......
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~-- 515 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA-- 515 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc--
Confidence 4678888776543221111100111111 12567777888776 256677665432211 1111000
Q ss_pred cCeeeeEECCCCcEEEEEeCCC-----cEEEEEccCc
Q 017314 304 SNWSRSCISPDESYVAAGSADG-----SVYIWSISKA 335 (373)
Q Consensus 304 ~~~~~~~~s~~~~~l~sgs~Dg-----~i~iwd~~~~ 335 (373)
..+..-++...+.|+.|| +|..||..+.
T Consensus 516 ----~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 516 ----VGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ----ccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 011223677888888886 4566655443
No 370
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.30 E-value=0.11 Score=45.98 Aligned_cols=217 Identities=12% Similarity=0.154 Sum_probs=117.4
Q ss_pred EcCCCCEE-EEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEee---
Q 017314 138 ITHDNRSV-IAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF--- 213 (373)
Q Consensus 138 ~~~~~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~--- 213 (373)
|.++...| .+--..+.|.-|+..+++.. .+.. .+.+.+..... ....|+++. ..+.+++...+.....+..
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~-p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKR-VFPS-PGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceE-EEEC-CCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence 34555533 34445667888888766432 2221 22223332222 334455443 2356667655544222211
Q ss_pred ---cCceeEEEEccCCCEEEEEeC-----------CCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeC-C
Q 017314 214 ---HSNCNALAFSMDGQTIFSGHI-----------DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR-D 278 (373)
Q Consensus 214 ---~~~~~~~~~~~~g~~l~sg~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d 278 (373)
....|.+.+.|+|.+.++... -|.++.+|. .+..+..+..+ ...-+.|+||||++.|..+.. .
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~-~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDD-LTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCc-EEecCceEECCCCCEEEEEeCCC
Confidence 123578889999987764332 133444443 34444444332 356678999999987666644 4
Q ss_pred CeEEEEEccc--cceeee---eeecCCeeecCeeeeEECCCCcEEEEEeCCC-cEEEEEccCceEEEEeccCCccEEEEE
Q 017314 279 NLHNLFDIRS--LEVCGS---LRATGNRVASNWSRSCISPDESYVAAGSADG-SVYIWSISKADIVRTLKEHTAPVLSCS 352 (373)
Q Consensus 279 ~~i~~~d~~~--~~~~~~---~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg-~i~iwd~~~~~~~~~l~~h~~~V~~~~ 352 (373)
+.+.-|++.. ...... +..... ...---.++..+|.+-+++-.+| .|.+|+.. ++++..+.-+...+++++
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~--~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEE--PGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCC--CCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 7777776642 111111 000000 00001245677787776555554 89999988 889888887766778888
Q ss_pred EcC-CCCcE-EEEe
Q 017314 353 WSG-LGKPL-ASAD 364 (373)
Q Consensus 353 ~s~-~g~~l-~s~s 364 (373)
|-. +.+.| +|+.
T Consensus 262 FgG~~~~~L~iTs~ 275 (307)
T COG3386 262 FGGPDLNTLYITSA 275 (307)
T ss_pred EeCCCcCEEEEEec
Confidence 865 44544 4433
No 371
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.29 E-value=0.23 Score=49.46 Aligned_cols=273 Identities=14% Similarity=0.123 Sum_probs=148.6
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEe--CCCCceeeecc--ccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEE
Q 017314 91 CASILFEYNSARLISGGQDKSIKLWD--TNTGSLSSTLY--GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH 166 (373)
Q Consensus 91 v~~~~~~~~~~~l~s~s~D~~v~iwd--~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 166 (373)
|--..|--|..+|+++..||.+..+. ..++.....-+ -...|+.--.|+..++.-+.+..|.-.-+|-- +++...
T Consensus 586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-n~kLv~ 664 (1096)
T KOG1897|consen 586 ILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS-NGKLVY 664 (1096)
T ss_pred eeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-CCcEEE
Confidence 44445556688999999999998664 44554322221 12345655667777766666666766666653 333332
Q ss_pred EeecCCCcEEEE-EEee-CCCCEEEEEeCCCcEEEEEccCC--eeeeEEeecCceeEEEEccCCCEEEEEeC--------
Q 017314 167 TLTGHTDKVCAV-DVSK-ISSRHVVSAAYDRTLKVWDLHKG--YCVNTIIFHSNCNALAFSMDGQTIFSGHI-------- 234 (373)
Q Consensus 167 ~~~~h~~~v~~~-~~~~-~~~~~~~s~s~D~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~g~~l~sg~~-------- 234 (373)
+--.- ..+..+ .|+. .-...++++. .+.+++..+..- -.+++++.+.....+++.+....+.+.+.
T Consensus 665 spls~-kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~ 742 (1096)
T KOG1897|consen 665 SPLSL-KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEY 742 (1096)
T ss_pred eccch-HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhh
Confidence 21110 111111 1111 1233445444 345666655432 22445555556667777764444333222
Q ss_pred ---C---CcEEEEECCCCeeeEEEeccc---ccceEEEEEcCC-CCEEEEee----------CCCeEEEEEccccceeee
Q 017314 235 ---D---GNLRLWDIQTGKLLSEVAAHS---LAAVTSISLSRS-GNIILTSG----------RDNLHNLFDIRSLEVCGS 294 (373)
Q Consensus 235 ---d---g~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~-~~~l~s~~----------~d~~i~~~d~~~~~~~~~ 294 (373)
. ..++++|-++.+.+....... ...+.++.|..| +.+++.|. ..|.+.+|.+........
T Consensus 743 ~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~ 822 (1096)
T KOG1897|consen 743 YGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLEL 822 (1096)
T ss_pred cCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceee
Confidence 1 147788887776654432222 124666678877 66666653 123455555443111111
Q ss_pred eeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEE
Q 017314 295 LRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV 371 (373)
Q Consensus 295 ~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~i 371 (373)
. +...+......+ .-.+|++||. -...|++|++.+++.++.-..|..++..+...-.|..++.|+.=+.|.+
T Consensus 823 v--~e~~v~Gav~aL-~~fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 823 V--AETVVKGAVYAL-VEFNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred e--eeeeeccceeeh-hhhCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 1 111111111111 1236777765 3457999999988777666678888999999888999999887766654
No 372
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0015 Score=60.86 Aligned_cols=92 Identities=18% Similarity=0.241 Sum_probs=67.2
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeec-Ccee-EEEEccCCCEEEEEeCCCcEEEEECCCCeeeEE
Q 017314 174 KVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCN-ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE 251 (373)
Q Consensus 174 ~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~-~~~~-~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~ 251 (373)
.+.-+.|+| .-..++.+..+|.+-+.-+. -+.+.++..+ .+++ +++|.|||+.|+.|-.||+|++.|+.++..+..
T Consensus 22 ~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 22 NIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred ceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 345566777 45678888888888777666 3445555533 3455 999999999999999999999999999887776
Q ss_pred EecccccceEEEEEcC
Q 017314 252 VAAHSLAAVTSISLSR 267 (373)
Q Consensus 252 ~~~~~~~~v~~~~~~~ 267 (373)
....-...|.++-|++
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 4332235677777764
No 373
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.28 E-value=0.19 Score=48.34 Aligned_cols=148 Identities=14% Similarity=0.183 Sum_probs=84.3
Q ss_pred CCEEEEeeCCCcEEEEeCCCCceeeeccc--cc--cceEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCeeEEEee
Q 017314 100 SARLISGGQDKSIKLWDTNTGSLSSTLYG--CL--GSVLDLAITHDNRSVIAASS------SNNLYVWDVNSGRVRHTLT 169 (373)
Q Consensus 100 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--~~--~~v~~~~~~~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~ 169 (373)
+..++.++.|+.|.-.|..+|+.+-.... +. ..+++--.-.++ .++.++. ++.|.-+|.++|+.+-.+.
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 45677888999999999999987644321 11 011110011133 4444432 6889999999998765442
Q ss_pred cCC-------------------------------CcEE-EEEEeeCCCCEEEEEe-----CCC-----------cEEEEE
Q 017314 170 GHT-------------------------------DKVC-AVDVSKISSRHVVSAA-----YDR-----------TLKVWD 201 (373)
Q Consensus 170 ~h~-------------------------------~~v~-~~~~~~~~~~~~~s~s-----~D~-----------~i~vwd 201 (373)
.-. ..+. ..++.+ ..++++.+. .++ +|.--|
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 210 0111 123333 233343332 122 455567
Q ss_pred ccCCeeeeEEee--cC--------ceeEEEEccCCC---EEEEEeCCCcEEEEECCCCeee
Q 017314 202 LHKGYCVNTIIF--HS--------NCNALAFSMDGQ---TIFSGHIDGNLRLWDIQTGKLL 249 (373)
Q Consensus 202 ~~~~~~~~~~~~--~~--------~~~~~~~~~~g~---~l~sg~~dg~i~iwd~~~~~~~ 249 (373)
+++|+..-.+.. |. ...-+.+..+|+ .++.+..+|.+.+.|.++|+.+
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 788876544432 11 112233335776 6778999999999999999876
No 374
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.28 E-value=0.00081 Score=54.93 Aligned_cols=138 Identities=13% Similarity=0.125 Sum_probs=87.2
Q ss_pred EEEEeCCCcEEEEECCCCeeeEEEecccccceEE-EEEcCCCCEEEEeeCCCeEEEEEccccceeeee-eecCCeeecCe
Q 017314 229 IFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTS-ISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL-RATGNRVASNW 306 (373)
Q Consensus 229 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~ 306 (373)
+..-+.||.|+-++++..+.-..- ...+.+ .....-+..++.|+.++.+.+|...-....... ..-...+..
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rs----e~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~-- 106 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRS----ERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDL-- 106 (238)
T ss_pred hccccCCcccccchhhhhhhhhhh----hhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhccccccee--
Confidence 334567888888877653321110 011111 112234567889999999999987622111100 000111110
Q ss_pred eeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCC-ccEEEEEEcCCCCcEEEE--eCCCeEEEcC
Q 017314 307 SRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHT-APVLSCSWSGLGKPLASA--DKNGVVCVWT 373 (373)
Q Consensus 307 ~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~-~~V~~~~~s~~g~~l~s~--s~dg~i~iW~ 373 (373)
.+....++.+.++++.||.||-|++...+.+.....|+ .++.....+..++.|+++ |.|..++.|+
T Consensus 107 -~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 107 -GIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred -ccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcc
Confidence 11123456688999999999999999999988888888 777777778888888888 8888888885
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.0051 Score=56.36 Aligned_cols=145 Identities=19% Similarity=0.280 Sum_probs=95.3
Q ss_pred cCCCCEEE-EEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCC------CCEEEEEeCCCcEEEEEccCCee--e-
Q 017314 139 THDNRSVI-AASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKIS------SRHVVSAAYDRTLKVWDLHKGYC--V- 208 (373)
Q Consensus 139 ~~~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~------~~~~~s~s~D~~i~vwd~~~~~~--~- 208 (373)
..+.++|+ ++..-..++--|++.|+.+....-|.+ |..+.+.|.. ...-+.|-.|..|.-||.+-... +
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence 34445544 344445788889999999988887777 5555555421 22234567788999999873221 1
Q ss_pred ----eEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEE
Q 017314 209 ----NTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF 284 (373)
Q Consensus 209 ----~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~ 284 (373)
+.+....+..|.+-..+| +|+.||.+|.||+||- .+...++..+.-..+|.-+..+.+|++|++.+. ..+.+.
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi 497 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLI 497 (644)
T ss_pred eeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEE
Confidence 112223345677766666 7899999999999997 554444444444478999999999998876644 455566
Q ss_pred Ecc
Q 017314 285 DIR 287 (373)
Q Consensus 285 d~~ 287 (373)
++.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 643
No 376
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.14 E-value=0.048 Score=45.04 Aligned_cols=136 Identities=15% Similarity=0.173 Sum_probs=85.8
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcE--------EEEEEeeCCCCEEEEEeCCCcEEEEE-
Q 017314 131 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKV--------CAVDVSKISSRHVVSAAYDRTLKVWD- 201 (373)
Q Consensus 131 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v--------~~~~~~~~~~~~~~s~s~D~~i~vwd- 201 (373)
...++-.++|+|++ +.|.+...--+.....+.+..-+.+|.-.. ..++|+.....+.+.-+.+-+|.-||
T Consensus 109 nR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred cccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 34555667899998 444433222233333445444455554322 35666644444556777788888888
Q ss_pred -ccCCeeee-----EEe-----ecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCC
Q 017314 202 -LHKGYCVN-----TII-----FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS 268 (373)
Q Consensus 202 -~~~~~~~~-----~~~-----~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 268 (373)
..+|...+ .+. .+...-.+++..+|++.++.-..++|...|..+|+.+.++.... ..++|++|--.
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt-~qitsccFgGk 264 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPT-PQITSCCFGGK 264 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCC-CceEEEEecCC
Confidence 45553211 111 11123456667788888888889999999999999999998775 78999999643
No 377
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.07 E-value=0.4 Score=48.02 Aligned_cols=200 Identities=13% Similarity=0.154 Sum_probs=114.8
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCc--------EEEEEEee---------------CCCCEEEEEeCCCcEE
Q 017314 142 NRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDK--------VCAVDVSK---------------ISSRHVVSAAYDRTLK 198 (373)
Q Consensus 142 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~--------v~~~~~~~---------------~~~~~~~s~s~D~~i~ 198 (373)
+..++.++.++.|.-.|..+|+.+-.+.-.... ...+.+.. .....++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457788888899999999999887766533211 11222211 1234678888999999
Q ss_pred EEEccCCeeeeEEeecCcee-------------EEEEcc--CCCEEEEEeC----------CCcEEEEECCCCeeeEEEe
Q 017314 199 VWDLHKGYCVNTIIFHSNCN-------------ALAFSM--DGQTIFSGHI----------DGNLRLWDIQTGKLLSEVA 253 (373)
Q Consensus 199 vwd~~~~~~~~~~~~~~~~~-------------~~~~~~--~g~~l~sg~~----------dg~i~iwd~~~~~~~~~~~ 253 (373)
-.|.++|+....+.....+. ...-.| .+..++.|+. +|.|+-+|.++|+.+..+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999998776543222110 011112 1345555543 6889999999999887764
Q ss_pred cccc----------------cce-EEEEEcCCCCEEEEee------------------CCCeEEEEEccccceeeeeeec
Q 017314 254 AHSL----------------AAV-TSISLSRSGNIILTSG------------------RDNLHNLFDIRSLEVCGSLRAT 298 (373)
Q Consensus 254 ~~~~----------------~~v-~~~~~~~~~~~l~s~~------------------~d~~i~~~d~~~~~~~~~~~~~ 298 (373)
.... ..+ ...++++...++.... ..+.+.-.|+.+++..=.++..
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~ 433 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV 433 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence 3100 001 2345555554443321 1233445556665554433321
Q ss_pred CCee-----ecCeeeeEECC-CCc---EEEEEeCCCcEEEEEccCceEEEEe
Q 017314 299 GNRV-----ASNWSRSCISP-DES---YVAAGSADGSVYIWSISKADIVRTL 341 (373)
Q Consensus 299 ~~~~-----~~~~~~~~~s~-~~~---~l~sgs~Dg~i~iwd~~~~~~~~~l 341 (373)
.+.. ...-....+.. +|+ .++.++.+|.++++|-.+|+++-..
T Consensus 434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 1110 00000111222 563 7889999999999999999887554
No 378
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.96 E-value=0.33 Score=45.25 Aligned_cols=191 Identities=11% Similarity=0.149 Sum_probs=99.0
Q ss_pred EEEEEcCCCCEEEEe-eCC----CcEEEEeCCCCceeeec-cccccceEEEEEcCCCCEEEEEeCCC-----------cE
Q 017314 92 ASILFEYNSARLISG-GQD----KSIKLWDTNTGSLSSTL-YGCLGSVLDLAITHDNRSVIAASSSN-----------NL 154 (373)
Q Consensus 92 ~~~~~~~~~~~l~s~-s~D----~~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~s~d~-----------~i 154 (373)
....++|||+++|-+ +.. .++++.|+++++.+... ... ....+.|.+|++.|+....+. .|
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 357899999988644 333 45999999999765432 221 122389999998887766444 37
Q ss_pred EEEEcCCCee--EEEeecCCCc--EEEEEEeeCCCCEEE-EEeCC---CcEEEEEccCC----eeeeEEeecC-ceeEEE
Q 017314 155 YVWDVNSGRV--RHTLTGHTDK--VCAVDVSKISSRHVV-SAAYD---RTLKVWDLHKG----YCVNTIIFHS-NCNALA 221 (373)
Q Consensus 155 ~iwd~~~~~~--~~~~~~h~~~--v~~~~~~~~~~~~~~-s~s~D---~~i~vwd~~~~----~~~~~~~~~~-~~~~~~ 221 (373)
+.|.+.+... ...+...... ...+..++ ++++++ +.... ..+.+-|+..+ .....+.... .+....
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 8888876642 2455544433 34566665 456654 44333 34677777764 1222222222 222222
Q ss_pred EccCCCEEEEE---eCCCcEEEEECCCCee---eEEEecccc-cceEEEEEcCCCCEEEE-eeCCC--eEEEEEcc
Q 017314 222 FSMDGQTIFSG---HIDGNLRLWDIQTGKL---LSEVAAHSL-AAVTSISLSRSGNIILT-SGRDN--LHNLFDIR 287 (373)
Q Consensus 222 ~~~~g~~l~sg---~~dg~i~iwd~~~~~~---~~~~~~~~~-~~v~~~~~~~~~~~l~s-~~~d~--~i~~~d~~ 287 (373)
-+..+.+++.. ...+.|-..++..... ...+..+.. ..+..+.. .+.+|+. --.++ .++++++.
T Consensus 284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence 22233333322 2345666677766542 223433331 23444444 3444444 33443 46788887
No 379
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.0065 Score=60.25 Aligned_cols=102 Identities=17% Similarity=0.276 Sum_probs=74.7
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCce-eeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEE
Q 017314 99 NSARLISGGQDKSIKLWDTNTGSL-SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCA 177 (373)
Q Consensus 99 ~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 177 (373)
-+..++.|+..|.|-..|+...-. ...-..-.++|++++|+.+|..++.|-.+|.|.+||..+++..+.+..|..++.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 456788888889998888765311 1111223578999999999999999999999999999999999988888877766
Q ss_pred EEEee-C-CCCEEEEEeCCCcEEEEEc
Q 017314 178 VDVSK-I-SSRHVVSAAYDRTLKVWDL 202 (373)
Q Consensus 178 ~~~~~-~-~~~~~~s~s~D~~i~vwd~ 202 (373)
+-+.. . ....++++..-|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 54332 1 2334677766665 6654
No 380
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.0059 Score=60.51 Aligned_cols=98 Identities=26% Similarity=0.378 Sum_probs=71.3
Q ss_pred CCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCcc
Q 017314 268 SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAP 347 (373)
Q Consensus 268 ~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~ 347 (373)
.+..++.|+.-+-+-.+|.+..- ..+ ..+..+..+...++|+.+|++++.|-.+|.|.+||+..+++++.+..|..|
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL--~~~-~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNL--GPL-HQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhccc--chh-hcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc
Confidence 44567777777777777766421 100 223344455567899999999999999999999999999999988877666
Q ss_pred EEE---EEEcCCCCcEEEEeCCCe
Q 017314 348 VLS---CSWSGLGKPLASADKNGV 368 (373)
Q Consensus 348 V~~---~~~s~~g~~l~s~s~dg~ 368 (373)
+++ +.|..++..+.+++..|.
T Consensus 175 ~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred cceEEEEEEeCCCcEEEEccCCCc
Confidence 544 455566677888888885
No 381
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.75 E-value=0.15 Score=49.51 Aligned_cols=217 Identities=14% Similarity=0.137 Sum_probs=108.0
Q ss_pred CCEEEEEeCC------CcEEEEEcCCCeeEEEeec-CCCcEEEEEEeeCCCCEEEEEeCC------CcEEEEEccCCeee
Q 017314 142 NRSVIAASSS------NNLYVWDVNSGRVRHTLTG-HTDKVCAVDVSKISSRHVVSAAYD------RTLKVWDLHKGYCV 208 (373)
Q Consensus 142 ~~~l~s~s~d------~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~s~s~D------~~i~vwd~~~~~~~ 208 (373)
+..++.|+.+ ..+..||+.+++-.....- +...-.++++. .+...++||.| .++-.||.+.+...
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 3455556655 4688888887743221111 11122233333 35677889988 34667787766533
Q ss_pred eEEeecCceeEEE-EccCCCEEEEEeCCCc-----EEEEECCCCeeeEEEeccc-ccceEEEEEcCCCCEEEEeeCCCe-
Q 017314 209 NTIIFHSNCNALA-FSMDGQTIFSGHIDGN-----LRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRDNL- 280 (373)
Q Consensus 209 ~~~~~~~~~~~~~-~~~~g~~l~sg~~dg~-----i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~- 280 (373)
..-.....-...+ ..-+|...+.|+.||. |..||..+.+--..-.... ......+. -+|.+.+.||.++.
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSS 440 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCc
Confidence 2111111111111 1236777788999874 7788887654321110100 01111122 25777788886653
Q ss_pred -----EEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCc-----EEEEEccCceE--EEEeccCCccE
Q 017314 281 -----HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGS-----VYIWSISKADI--VRTLKEHTAPV 348 (373)
Q Consensus 281 -----i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~-----i~iwd~~~~~~--~~~l~~h~~~V 348 (373)
+..||..+......-.-...+. .. ....-++...+.|+.|+. |..+|..+.+- +..+......+
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~---~~-g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRS---GF-GVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV 516 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccccc---cc-eEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc
Confidence 4566665433211111000000 00 112347788888888873 77788766433 32233222333
Q ss_pred EEEEEcCCCCcEEEEeCCCe
Q 017314 349 LSCSWSGLGKPLASADKNGV 368 (373)
Q Consensus 349 ~~~~~s~~g~~l~s~s~dg~ 368 (373)
-.+.+ +++..+.|+.||.
T Consensus 517 g~~~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 517 GVVVL--GGKLYAVGGFDGN 534 (571)
T ss_pred cEEEE--CCEEEEEecccCc
Confidence 33333 4567777887764
No 382
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.69 E-value=0.43 Score=46.43 Aligned_cols=148 Identities=18% Similarity=0.215 Sum_probs=80.5
Q ss_pred cceEEEEEcCCCCEEEEEe------CCC--cEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeC---------
Q 017314 131 GSVLDLAITHDNRSVIAAS------SSN--NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY--------- 193 (373)
Q Consensus 131 ~~v~~~~~~~~~~~l~s~s------~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~--------- 193 (373)
..+.+.+++|||+.++... .|. .+.+++.. +.......+. ....-.|+| ++..+++.+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECC-CCCceEEEecCcceEEEec
Confidence 4577889999999887665 244 45555542 2222223332 245556776 3444544432
Q ss_pred ---CCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEE---EECCCCee-e---EEEecccccceEEE
Q 017314 194 ---DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRL---WDIQTGKL-L---SEVAAHSLAAVTSI 263 (373)
Q Consensus 194 ---D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~i---wd~~~~~~-~---~~~~~~~~~~v~~~ 263 (373)
.+.+.+.++..+.... .....+..+.|||||..++.-. +|.|.+ -....|.. + ..+.......+.++
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 2333333444433322 2344689999999999887654 467766 34334431 1 11222221235889
Q ss_pred EEcCCCCEEEEeeCCCeEEEEEc
Q 017314 264 SLSRSGNIILTSGRDNLHNLFDI 286 (373)
Q Consensus 264 ~~~~~~~~l~s~~~d~~i~~~d~ 286 (373)
.|.+++.+++ +..+....+|.+
T Consensus 503 ~W~~~~~L~V-~~~~~~~~v~~v 524 (591)
T PRK13616 503 DWRTGDSLVV-GRSDPEHPVWYV 524 (591)
T ss_pred eEecCCEEEE-EecCCCCceEEE
Confidence 9999998654 334433334443
No 383
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.013 Score=54.98 Aligned_cols=90 Identities=10% Similarity=0.126 Sum_probs=70.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEE-EEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeE
Q 017314 132 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVC-AVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT 210 (373)
Q Consensus 132 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~ 210 (373)
.+.-+.|+|.-..++.+..+|.+-+..++ .+.+.++.-|..+++ +++|.| +++.++.|-.||+|++.|+.++..+..
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCceec
Confidence 35557788888899999999999888887 666778887777777 999988 689999999999999999999877665
Q ss_pred --EeecCceeEEEEc
Q 017314 211 --IIFHSNCNALAFS 223 (373)
Q Consensus 211 --~~~~~~~~~~~~~ 223 (373)
+.....+.++-|.
T Consensus 100 ~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 100 FLFSVETDISKGIWD 114 (665)
T ss_pred cccccccchheeecc
Confidence 2223334444443
No 384
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.65 E-value=0.57 Score=43.65 Aligned_cols=219 Identities=12% Similarity=0.141 Sum_probs=107.2
Q ss_pred eEEEEEcCCCCEEEEE-eCCC----cEEEEEcCCCeeEEEe-ecCCCcEEEEEEeeCCCCEEEEEeCC-----------C
Q 017314 133 VLDLAITHDNRSVIAA-SSSN----NLYVWDVNSGRVRHTL-TGHTDKVCAVDVSKISSRHVVSAAYD-----------R 195 (373)
Q Consensus 133 v~~~~~~~~~~~l~s~-s~d~----~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~s~s~D-----------~ 195 (373)
+....++||+++++.+ +..| +++++|+.+++.+... .. .. ...+.|.+. +..++-...| .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~-~~~~~W~~d-~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PK-FSSVSWSDD-GKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EE-SEEEEECTT-SSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cc-cceEEEeCC-CCEEEEEEeCcccccccCCCCc
Confidence 3467899999987744 3333 5999999999765422 21 11 123778764 4445444332 2
Q ss_pred cEEEEEccCCeeeeEEee--c--Cc-eeEEEEccCCCEEEEEeC---C-CcEEEEECCCC----eeeEEEecccccceEE
Q 017314 196 TLKVWDLHKGYCVNTIIF--H--SN-CNALAFSMDGQTIFSGHI---D-GNLRLWDIQTG----KLLSEVAAHSLAAVTS 262 (373)
Q Consensus 196 ~i~vwd~~~~~~~~~~~~--~--~~-~~~~~~~~~g~~l~sg~~---d-g~i~iwd~~~~----~~~~~~~~~~~~~v~~ 262 (373)
.|..|.+.+......+.+ . .. ...+..++|+++|+..+. + ..+.+.|+..+ .....+..........
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 367788766543222222 2 22 457888999999874332 2 34788888764 2333343333233344
Q ss_pred EEEcCCCCEEEEeeC---CCeEEEEEccccce---eeeeeecCCeeecCeeeeEECCCCc-EEEEEeCCC--cEEEEEcc
Q 017314 263 ISLSRSGNIILTSGR---DNLHNLFDIRSLEV---CGSLRATGNRVASNWSRSCISPDES-YVAAGSADG--SVYIWSIS 333 (373)
Q Consensus 263 ~~~~~~~~~l~s~~~---d~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sgs~Dg--~i~iwd~~ 333 (373)
+... .+.+++.... .+.+.-.++..... ...+..+..... ...+...+. +++.-..++ .|+++++.
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~----l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVS----LEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEE----EEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCcee----EEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 4443 3333333322 23454555554431 112222221110 112233344 444455555 68888888
Q ss_pred -CceEEEEeccCCccEEEEEEcCCCCc
Q 017314 334 -KADIVRTLKEHTAPVLSCSWSGLGKP 359 (373)
Q Consensus 334 -~~~~~~~l~~h~~~V~~~~~s~~g~~ 359 (373)
..........-.+.|..+...+++..
T Consensus 358 ~~~~~~~~~~p~~g~v~~~~~~~~~~~ 384 (414)
T PF02897_consen 358 DGKESREIPLPEAGSVSGVSGDFDSDE 384 (414)
T ss_dssp -TEEEEEEESSSSSEEEEEES-TT-SE
T ss_pred CCcEEeeecCCcceEEeccCCCCCCCE
Confidence 43333322223345666665565553
No 385
>PHA02713 hypothetical protein; Provisional
Probab=96.60 E-value=0.094 Score=50.84 Aligned_cols=183 Identities=8% Similarity=0.084 Sum_probs=89.6
Q ss_pred CCCEEEEeeCC------CcEEEEeCCCCcee--eeccccccceEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCeeE
Q 017314 99 NSARLISGGQD------KSIKLWDTNTGSLS--STLYGCLGSVLDLAITHDNRSVIAASSSN-----NLYVWDVNSGRVR 165 (373)
Q Consensus 99 ~~~~l~s~s~D------~~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~s~d~-----~i~iwd~~~~~~~ 165 (373)
++...+.||.+ .++..||..++.-. ..+........ ....++...+.|+.++ ++..||+.+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~--~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS--LAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee--EEEECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 56777778754 34777887766421 11111111111 1223566667777653 4888998876422
Q ss_pred E--EeecCCCcEEEEEEeeCCCCEEEEEeCCC-----------------------cEEEEEccCCeeeeEEeecC-ceeE
Q 017314 166 H--TLTGHTDKVCAVDVSKISSRHVVSAAYDR-----------------------TLKVWDLHKGYCVNTIIFHS-NCNA 219 (373)
Q Consensus 166 ~--~~~~h~~~v~~~~~~~~~~~~~~s~s~D~-----------------------~i~vwd~~~~~~~~~~~~~~-~~~~ 219 (373)
. .+.........+. .++...+.|+.++ ++..||..++.....-.... ....
T Consensus 381 ~~~~mp~~r~~~~~~~---~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~ 457 (557)
T PHA02713 381 MLPDMPIALSSYGMCV---LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP 457 (557)
T ss_pred ECCCCCcccccccEEE---ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC
Confidence 1 1111111111111 2455666777653 46678877664322111111 1111
Q ss_pred EEEccCCCEEEEEeCC------CcEEEEECCC-Ceee--EEEecccccceEEEEEcCCCCEEEEeeCCC--eEEEEEccc
Q 017314 220 LAFSMDGQTIFSGHID------GNLRLWDIQT-GKLL--SEVAAHSLAAVTSISLSRSGNIILTSGRDN--LHNLFDIRS 288 (373)
Q Consensus 220 ~~~~~~g~~l~sg~~d------g~i~iwd~~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~--~i~~~d~~~ 288 (373)
-+..-+|...+.|+.+ ..+..||..+ .+-. ..+...- .....+.+ ++++.+.||.++ .+..||..+
T Consensus 458 ~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r-~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 458 GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL-SALHTILH--DNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc-ccceeEEE--CCEEEEEeeecceeehhhcCccc
Confidence 1222356666667654 2467899887 4432 2221111 11222222 678888888887 455566554
Q ss_pred c
Q 017314 289 L 289 (373)
Q Consensus 289 ~ 289 (373)
.
T Consensus 535 ~ 535 (557)
T PHA02713 535 Y 535 (557)
T ss_pred c
Confidence 3
No 386
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.57 E-value=0.72 Score=44.93 Aligned_cols=187 Identities=16% Similarity=0.181 Sum_probs=92.0
Q ss_pred CcEEEEEEeeCCCCEEEEEe------CCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCC-----------
Q 017314 173 DKVCAVDVSKISSRHVVSAA------YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHID----------- 235 (373)
Q Consensus 173 ~~v~~~~~~~~~~~~~~s~s------~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~d----------- 235 (373)
..+...++++. +..++..- .|..-.||=...+.....+........-.|+|||..|.+....
T Consensus 350 ~~vsspaiSpd-G~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 350 GNITSAALSRS-GRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred cCcccceECCC-CCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 35567778874 44444322 2443344432222212233223335667899998877765432
Q ss_pred -CcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEE---EEccccceeeeeee---cCCeeecCeee
Q 017314 236 -GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL---FDIRSLEVCGSLRA---TGNRVASNWSR 308 (373)
Q Consensus 236 -g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~---~d~~~~~~~~~~~~---~~~~~~~~~~~ 308 (373)
+.+.+.++..+.... .....|.++.|+|||..++.-. ++.+.+ -....++ ..+.. -..........
T Consensus 429 ~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 429 TGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTAVS 501 (591)
T ss_pred CceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEeecccCCcccc
Confidence 233333443333221 1124699999999999877654 355544 2222222 11100 00000000112
Q ss_pred eEECCCCcEEEEEeCCCcEEEEEccC-ceEEEEecc--CCccEEEEEEcCCCCcEEEEeCCCeEE
Q 017314 309 SCISPDESYVAAGSADGSVYIWSISK-ADIVRTLKE--HTAPVLSCSWSGLGKPLASADKNGVVC 370 (373)
Q Consensus 309 ~~~s~~~~~l~sgs~Dg~i~iwd~~~-~~~~~~l~~--h~~~V~~~~~s~~g~~l~s~s~dg~i~ 370 (373)
+.+.+++.++ .+..++.-.+|.+.- |.....+.. ...+|.+++=++. .|..++.+|.+.
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 3455677754 555566556666543 222222233 3567888887773 355556666554
No 387
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.44 E-value=0.49 Score=40.78 Aligned_cols=148 Identities=18% Similarity=0.152 Sum_probs=84.8
Q ss_pred ceeEEEEccCCCEEEEEe-CCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEE-cccccee-
Q 017314 216 NCNALAFSMDGQTIFSGH-IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFD-IRSLEVC- 292 (373)
Q Consensus 216 ~~~~~~~~~~g~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d-~~~~~~~- 292 (373)
.+.+.+++++|..++... .++.-.+|-...+....... ....++.-+|++++...+....+...+++. .......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 467889999999876544 23333344333333333322 123677788999988777766666666653 2221111
Q ss_pred eeeeecCCeeecCeeeeEECCCCcEEEEEe---CCCcEEEEEccC---c------eEEEEeccCCccEEEEEEcCCCCcE
Q 017314 293 GSLRATGNRVASNWSRSCISPDESYVAAGS---ADGSVYIWSISK---A------DIVRTLKEHTAPVLSCSWSGLGKPL 360 (373)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs---~Dg~i~iwd~~~---~------~~~~~l~~h~~~V~~~~~s~~g~~l 360 (373)
..+..... ...+..+.+||||..+|.-. .++.|++=-+.. + .+..........+++++|.+++.++
T Consensus 103 ~~v~~~~~--~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 103 VEVDWPGL--RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred EEeccccc--CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 11111110 00344577999999877654 457777776542 3 1112222335678999999999877
Q ss_pred EEEeCCC
Q 017314 361 ASADKNG 367 (373)
Q Consensus 361 ~s~s~dg 367 (373)
+.+...+
T Consensus 181 V~~~~~~ 187 (253)
T PF10647_consen 181 VLGRSAG 187 (253)
T ss_pred EEeCCCC
Confidence 7665543
No 388
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.37 E-value=0.0089 Score=36.27 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=26.2
Q ss_pred CccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 345 TAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 345 ~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
..+|..++|+|....||.++.||.|.+++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~R 39 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYR 39 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEE
Confidence 45799999999999999999999998874
No 389
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.35 E-value=0.21 Score=45.69 Aligned_cols=145 Identities=15% Similarity=0.157 Sum_probs=76.1
Q ss_pred ceeEEEEccCCCEEEEEe-----------CCC-cEEEEECCC--Cee--eEEEecccccceEEEEEcCCCCEEEEeeCCC
Q 017314 216 NCNALAFSMDGQTIFSGH-----------IDG-NLRLWDIQT--GKL--LSEVAAHSLAAVTSISLSRSGNIILTSGRDN 279 (373)
Q Consensus 216 ~~~~~~~~~~g~~l~sg~-----------~dg-~i~iwd~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 279 (373)
....++|.++|+.+++-. ..+ .|.+++-.+ |+. ...+. ......+.+++.+++ ++++ +...
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa-~~l~~p~Gi~~~~~G-lyV~-~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA-EELSMVTGLAVAVGG-VYVA-TPPD 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee-cCCCCccceeEecCC-EEEe-CCCe
Confidence 356788999998776642 223 677776432 322 12222 222456889999988 5544 4555
Q ss_pred eEEEEEcccc-------cee-eeeeecCCeeecCeeeeEECCCCcEEEEEeC-------------------CCcEEEEEc
Q 017314 280 LHNLFDIRSL-------EVC-GSLRATGNRVASNWSRSCISPDESYVAAGSA-------------------DGSVYIWSI 332 (373)
Q Consensus 280 ~i~~~d~~~~-------~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~-------------------Dg~i~iwd~ 332 (373)
..++.|.... +.+ ..+.............+.+.|||.+.++-+. .|.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 4445454321 111 1111110001122334678899886655331 144555555
Q ss_pred cCceEEEEeccCCccEEEEEEcCCCCcEEEEe
Q 017314 333 SKADIVRTLKEHTAPVLSCSWSGLGKPLASAD 364 (373)
Q Consensus 333 ~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s 364 (373)
..++......++ .....++|+|+|+.+++-.
T Consensus 172 dg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 554433222333 3347899999998876643
No 390
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.33 E-value=0.58 Score=40.10 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=44.5
Q ss_pred EEEcCCCCEEEEeeCC-----CcEEEEeCCCC-ceeeeccccccceEEEEEcCCCCEEEEEeC
Q 017314 94 ILFEYNSARLISGGQD-----KSIKLWDTNTG-SLSSTLYGCLGSVLDLAITHDNRSVIAASS 150 (373)
Q Consensus 94 ~~~~~~~~~l~s~s~D-----~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 150 (373)
-.||+||.+|+..-.| |.|-|||...+ +.+..+..|.-....+.+.+||+.++.+..
T Consensus 119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 3799999999876654 78999998754 345667777777788999999998886644
No 391
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.28 E-value=0.93 Score=41.91 Aligned_cols=144 Identities=10% Similarity=0.142 Sum_probs=81.9
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCce-----eeeccccccceEEEEEcC----CCCEEEEEeCCCcEEEEEcCC--Ce----
Q 017314 99 NSARLISGGQDKSIKLWDTNTGSL-----SSTLYGCLGSVLDLAITH----DNRSVIAASSSNNLYVWDVNS--GR---- 163 (373)
Q Consensus 99 ~~~~l~s~s~D~~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~----~~~~l~s~s~d~~i~iwd~~~--~~---- 163 (373)
+...|+.||..|.+|||+...+.. +.+ ..-..+|..+..-. .....++.=.-+.+.||.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 346899999999999999854331 111 11245677766432 223334444555667777621 11
Q ss_pred ---eEEEeecCC--CcEEEEEEeeCC----CCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeC
Q 017314 164 ---VRHTLTGHT--DKVCAVDVSKIS----SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI 234 (373)
Q Consensus 164 ---~~~~~~~h~--~~v~~~~~~~~~----~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~ 234 (373)
.+..+..|. .....+++-+.. ..++..=|.||++.+++-+.-...+.+....-...++|.|.-..+++++.
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC
Confidence 111112221 122233333322 35677789999999998664332222222122345778888888899888
Q ss_pred CCcEEEEEC
Q 017314 235 DGNLRLWDI 243 (373)
Q Consensus 235 dg~i~iwd~ 243 (373)
+..+..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 888888864
No 392
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.08 E-value=0.79 Score=39.24 Aligned_cols=182 Identities=10% Similarity=0.075 Sum_probs=108.8
Q ss_pred EEEEEeeCCCCEEEEEeCCC--cEEEEEccCCeeeeEEeecCce--eEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEE
Q 017314 176 CAVDVSKISSRHVVSAAYDR--TLKVWDLHKGYCVNTIIFHSNC--NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE 251 (373)
Q Consensus 176 ~~~~~~~~~~~~~~s~s~D~--~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~ 251 (373)
.++.+.. ++.++-|.+.-| .|+.+|+.+++........... ..++...| ....-.-.++..-+||..+.+.+.+
T Consensus 48 QGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 48 QGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEEE
T ss_pred ccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEEE
Confidence 4565643 455666777655 7899999999887776665542 34555432 3333456788999999999998888
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeec-CeeeeEECCCCcEEEEEeCCCcEEEE
Q 017314 252 VAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVAS-NWSRSCISPDESYVAAGSADGSVYIW 330 (373)
Q Consensus 252 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~l~sgs~Dg~i~iw 330 (373)
+.... .--.++ .++..|+.......+.++|..+.+....+......... ..+-+.+ -+|...|=-=..-.|..-
T Consensus 126 ~~y~~--EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~-i~G~IyANVW~td~I~~I 200 (264)
T PF05096_consen 126 FPYPG--EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY-INGKIYANVWQTDRIVRI 200 (264)
T ss_dssp EE-SS--S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE-ETTEEEEEETTSSEEEEE
T ss_pred EecCC--cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE-EcCEEEEEeCCCCeEEEE
Confidence 86653 334444 45666666666778899999888877776544222111 1122222 156555555555568888
Q ss_pred EccCceEEEEec------------cC---CccEEEEEEcCCCCcEEEEe
Q 017314 331 SISKADIVRTLK------------EH---TAPVLSCSWSGLGKPLASAD 364 (373)
Q Consensus 331 d~~~~~~~~~l~------------~h---~~~V~~~~~s~~g~~l~s~s 364 (373)
|..+|+....+. .+ ..-.+.+||.|.++.|...|
T Consensus 201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 999998887652 01 23468999999876554443
No 393
>PHA03098 kelch-like protein; Provisional
Probab=96.02 E-value=0.55 Score=45.46 Aligned_cols=184 Identities=17% Similarity=0.161 Sum_probs=85.4
Q ss_pred CCCCEEEEeeCCC------cEEEEeCCCCceeee--ccccccceEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCee
Q 017314 98 YNSARLISGGQDK------SIKLWDTNTGSLSST--LYGCLGSVLDLAITHDNRSVIAASSS-----NNLYVWDVNSGRV 164 (373)
Q Consensus 98 ~~~~~l~s~s~D~------~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~ 164 (373)
.++..++.||.++ .+..||..++.-... +.........+ ..++...+.|+.+ ..+..||+.+++-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3556677777543 567788876643221 11111111112 2356666777765 3577888876542
Q ss_pred EEE--eecCCCcEEEEEEeeCCCCEEEEEeCC------CcEEEEEccCCeeeeEEeecCc-eeEEEEccCCCEEEEEeCC
Q 017314 165 RHT--LTGHTDKVCAVDVSKISSRHVVSAAYD------RTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHID 235 (373)
Q Consensus 165 ~~~--~~~h~~~v~~~~~~~~~~~~~~s~s~D------~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~sg~~d 235 (373)
... +...... .++.. .++...+.||.+ ..+..||..++........+.. ....+...++...+.|+.+
T Consensus 371 ~~~~~lp~~r~~-~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 447 (534)
T PHA03098 371 REEPPLIFPRYN-PCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGIS 447 (534)
T ss_pred eeCCCcCcCCcc-ceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCcc
Confidence 211 1100111 11111 245566666632 4577888876643221111111 1111223356555666543
Q ss_pred C--------cEEEEECCCCeeeEEEecc-cccceEEEEEcCCCCEEEEeeCC-----CeEEEEEccc
Q 017314 236 G--------NLRLWDIQTGKLLSEVAAH-SLAAVTSISLSRSGNIILTSGRD-----NLHNLFDIRS 288 (373)
Q Consensus 236 g--------~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d-----~~i~~~d~~~ 288 (373)
+ .+.+||..+.+-...-... .......+.+ ++++++.||.+ +.+.+||..+
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCC
Confidence 2 3888998876533211110 0011112222 56666666654 3455565543
No 394
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.00 E-value=0.028 Score=34.08 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=28.9
Q ss_pred cCceeEEEEccCCCEEEEEeCCCcEEEEECCCCe
Q 017314 214 HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK 247 (373)
Q Consensus 214 ~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~ 247 (373)
...+.+++|+|...+|+.|+.||.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 455889999999999999999999999988 444
No 395
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.92 E-value=1 Score=39.21 Aligned_cols=142 Identities=18% Similarity=0.236 Sum_probs=83.9
Q ss_pred CCCCEEEEEeCCCcEEEEEcC-CCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeee---------
Q 017314 140 HDNRSVIAASSSNNLYVWDVN-SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN--------- 209 (373)
Q Consensus 140 ~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~--------- 209 (373)
..++.|+.|..+| +.++++. ........ +...|..+.+.+. -+.++.- .|+++.++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~-~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPE-LNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecc-cCEEEEE-cCCccEEEEchhhccccccccccccc
Confidence 3567888888888 9999983 33333332 2333888887763 4444443 35999999986433222
Q ss_pred ------EEeecCceeEEE--EccCCCEEEEEeCCCcEEEEECCCC-----eeeEEEecccccceEEEEEcCCCCEEEEee
Q 017314 210 ------TIIFHSNCNALA--FSMDGQTIFSGHIDGNLRLWDIQTG-----KLLSEVAAHSLAAVTSISLSRSGNIILTSG 276 (373)
Q Consensus 210 ------~~~~~~~~~~~~--~~~~g~~l~sg~~dg~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 276 (373)
.+.....+...+ -.+.+...+......+|.+|..... +..+++... ..+.+++|. ++.++.+.
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFL--GNKICVGT 155 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEe--CCEEEEEe
Confidence 111112344444 1234444444555668998887653 455555554 578888888 55666665
Q ss_pred CCCeEEEEEccccce
Q 017314 277 RDNLHNLFDIRSLEV 291 (373)
Q Consensus 277 ~d~~i~~~d~~~~~~ 291 (373)
.++ ..+.|+.+...
T Consensus 156 ~~~-f~~idl~~~~~ 169 (275)
T PF00780_consen 156 SKG-FYLIDLNTGSP 169 (275)
T ss_pred CCc-eEEEecCCCCc
Confidence 544 56778876544
No 396
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.89 E-value=1.2 Score=39.57 Aligned_cols=181 Identities=19% Similarity=0.198 Sum_probs=104.6
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeecc----c-cccceEEEEEcCCCCEEEEEeC---------CCcEEE
Q 017314 91 CASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY----G-CLGSVLDLAITHDNRSVIAASS---------SNNLYV 156 (373)
Q Consensus 91 v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~----~-~~~~v~~~~~~~~~~~l~s~s~---------d~~i~i 156 (373)
+.++..-..+..|+++. .-+.+++.+++.....+. + -....+++.+.|+|.+.++... -.+-.|
T Consensus 68 ~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~l 145 (307)
T COG3386 68 FSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSL 145 (307)
T ss_pred cccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceE
Confidence 34443333444555443 345667766555422221 1 1235667888899887665444 112245
Q ss_pred EEcC-CCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccC--Ceee--e-EEee---cCceeEEEEccCCC
Q 017314 157 WDVN-SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK--GYCV--N-TIIF---HSNCNALAFSMDGQ 227 (373)
Q Consensus 157 wd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~--~~~~--~-~~~~---~~~~~~~~~~~~g~ 227 (373)
|.+. .+..+..+..|-..-+.++|+|......++=+..+.|.-+++.. +... . .+.. ....-.++...+|.
T Consensus 146 yr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~ 225 (307)
T COG3386 146 YRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN 225 (307)
T ss_pred EEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC
Confidence 5544 56666666665555678999996544455556667787776642 1111 1 1111 12245577778888
Q ss_pred EEEEEeCCC-cEEEEECCCCeeeEEEecccccceEEEEEc-CCCCEEEEe
Q 017314 228 TIFSGHIDG-NLRLWDIQTGKLLSEVAAHSLAAVTSISLS-RSGNIILTS 275 (373)
Q Consensus 228 ~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~ 275 (373)
+-+++..+| .|..|+.. ++++..+.... ..+++++|- ++.+.|...
T Consensus 226 lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~-~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 226 LWVAAVWGGGRVVRFNPD-GKLLGEIKLPV-KRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred EEEecccCCceEEEECCC-CcEEEEEECCC-CCCccceEeCCCcCEEEEE
Confidence 776665555 89999998 88888887764 567777774 444544433
No 397
>PHA02790 Kelch-like protein; Provisional
Probab=95.81 E-value=0.94 Score=43.16 Aligned_cols=172 Identities=9% Similarity=-0.019 Sum_probs=80.0
Q ss_pred CCCEEEEeeCCC-----cEEEEeCCCCceee--eccccccceEEEEEcCCCCEEEEEeCC--CcEEEEEcCCCeeEEEee
Q 017314 99 NSARLISGGQDK-----SIKLWDTNTGSLSS--TLYGCLGSVLDLAITHDNRSVIAASSS--NNLYVWDVNSGRVRHTLT 169 (373)
Q Consensus 99 ~~~~l~s~s~D~-----~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~s~d--~~i~iwd~~~~~~~~~~~ 169 (373)
++..++.||.++ ++..||..++.-.. .+........ + ...++...+.|+.+ .++..||+.+++-...-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~-v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-G-VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-E-EEECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455667787653 56778887764322 1111111111 1 22356666666653 468889887654222111
Q ss_pred cCCCcEEEEEEeeCCCCEEEEEeCCC---cEEEEEccCCeeeeEEeecCc-eeEEEEccCCCEEEEEeCCCcEEEEECCC
Q 017314 170 GHTDKVCAVDVSKISSRHVVSAAYDR---TLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQT 245 (373)
Q Consensus 170 ~h~~~v~~~~~~~~~~~~~~s~s~D~---~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~sg~~dg~i~iwd~~~ 245 (373)
-. .+....+....++...+.||.++ ++..||..++.-...-..... ....+...+|...+.| |.+.+||..+
T Consensus 349 l~-~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 349 LL-KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CC-CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCC
Confidence 01 11111111112456667777653 466788876643221111111 1112223456555555 4578899877
Q ss_pred CeeeEEEeccc-ccceEEEEEcCCCCEEEEeeCC
Q 017314 246 GKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRD 278 (373)
Q Consensus 246 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d 278 (373)
.+-...-.... ......+. -++++.+.||.+
T Consensus 425 ~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~ 456 (480)
T PHA02790 425 NTWTLIDDPIYPRDNPELII--VDNKLLLIGGFY 456 (480)
T ss_pred CcEeEcCCCCCCccccEEEE--ECCEEEEECCcC
Confidence 65432111111 11111222 256777777754
No 398
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.64 E-value=1.6 Score=39.33 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=40.2
Q ss_pred CCcEEEEEeCCCcEEEEEccCceEEE----EeccCCccEEEEEEcCCCCcEEEEeCCCeEE
Q 017314 314 DESYVAAGSADGSVYIWSISKADIVR----TLKEHTAPVLSCSWSGLGKPLASADKNGVVC 370 (373)
Q Consensus 314 ~~~~l~sgs~Dg~i~iwd~~~~~~~~----~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~ 370 (373)
.|.+|++.-..+.|....+..+..+. .+......+.++++.|||.+.++.+.+|.|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 56677777667788888887543321 2334555899999999999999988999874
No 399
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=0.15 Score=51.45 Aligned_cols=142 Identities=15% Similarity=0.172 Sum_probs=91.0
Q ss_pred ceEEEEEcCCCCE--EEEEeCCCcEEEEEcCCCee-----EEEeecC------CCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 017314 132 SVLDLAITHDNRS--VIAASSSNNLYVWDVNSGRV-----RHTLTGH------TDKVCAVDVSKISSRHVVSAAYDRTLK 198 (373)
Q Consensus 132 ~v~~~~~~~~~~~--l~s~s~d~~i~iwd~~~~~~-----~~~~~~h------~~~v~~~~~~~~~~~~~~s~s~D~~i~ 198 (373)
++..+...+|+.. ++..+.+-.|..||+++-.. ..-|..| ...+.++.|.|.-....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4556667778664 34445555899999865311 1111111 122346667776566677888999999
Q ss_pred EEEccCCe-eeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEec---ccccceEEEEEcCCCCEEEE
Q 017314 199 VWDLHKGY-CVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA---HSLAAVTSISLSRSGNIILT 274 (373)
Q Consensus 199 vwd~~~~~-~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s 274 (373)
+.-+.... .+.++......++++|+|.|+.++.|-..|++.-|... ++....+.. .....|.+|+|-....+++.
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 98764322 22334445567899999999999999999999888653 333333322 12357899999877766654
No 400
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.53 E-value=1.4 Score=38.03 Aligned_cols=155 Identities=14% Similarity=0.218 Sum_probs=99.6
Q ss_pred CceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeee
Q 017314 215 SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGS 294 (373)
Q Consensus 215 ~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~ 294 (373)
.++.++.|+|+.+.|++......--++=...|+.+.++........-.|.+..+|++.++--+++.+.++.+.....+..
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~ 165 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVIS 165 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEe
Confidence 45889999999999998887777667766788888888665445566778888888888888888888877654322111
Q ss_pred -----eeec-CCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCce---EEEEeccCCc-------cEEEEEEcCC-C
Q 017314 295 -----LRAT-GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD---IVRTLKEHTA-------PVLSCSWSGL-G 357 (373)
Q Consensus 295 -----~~~~-~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~---~~~~l~~h~~-------~V~~~~~s~~-g 357 (373)
++-. ...-...+..++++|.++.|..+-+-.-+.|+.+.... .++....+.. .|.++.|++. +
T Consensus 166 ~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~ 245 (316)
T COG3204 166 AKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITN 245 (316)
T ss_pred ccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCC
Confidence 1111 11113445567889988888888777777777665332 1122222222 3566677764 4
Q ss_pred CcEEEEeCCCeE
Q 017314 358 KPLASADKNGVV 369 (373)
Q Consensus 358 ~~l~s~s~dg~i 369 (373)
..|+-+..++.+
T Consensus 246 ~LLVLS~ESr~l 257 (316)
T COG3204 246 SLLVLSDESRRL 257 (316)
T ss_pred cEEEEecCCceE
Confidence 455555555443
No 401
>PHA03098 kelch-like protein; Provisional
Probab=95.52 E-value=0.94 Score=43.84 Aligned_cols=186 Identities=11% Similarity=0.102 Sum_probs=86.8
Q ss_pred CCCCEEEEEeCCC------cEEEEEcCCCeeEEEe--ecCCCcEEEEEEeeCCCCEEEEEeCC-----CcEEEEEccCCe
Q 017314 140 HDNRSVIAASSSN------NLYVWDVNSGRVRHTL--TGHTDKVCAVDVSKISSRHVVSAAYD-----RTLKVWDLHKGY 206 (373)
Q Consensus 140 ~~~~~l~s~s~d~------~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~s~s~D-----~~i~vwd~~~~~ 206 (373)
.++..++.|+.++ .+..||+.+.+-...- .........+ . .++..++.||.+ .++..||..++.
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~-~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT-V--FNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE-E--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3455666666542 5778888776542211 1011111111 1 245566777765 346678877654
Q ss_pred eeeEEeecCc-eeEEEEccCCCEEEEEeCC------CcEEEEECCCCeeeEEEeccc-ccceEEEEEcCCCCEEEEeeCC
Q 017314 207 CVNTIIFHSN-CNALAFSMDGQTIFSGHID------GNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRD 278 (373)
Q Consensus 207 ~~~~~~~~~~-~~~~~~~~~g~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d 278 (373)
....-..+.. ....+...++...+.|+.+ ..+..||+.+.+-...-.... ...... ...++.+++.||.+
T Consensus 370 W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~--~~~~~~iyv~GG~~ 447 (534)
T PHA03098 370 WREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA--IYHDGKIYVIGGIS 447 (534)
T ss_pred eeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE--EEECCEEEEECCcc
Confidence 3221111111 1111122356666666632 358889987764322111100 011111 22345666666643
Q ss_pred C--------eEEEEEcccccee--eeeeecCCeeecCeeeeEECCCCcEEEEEeCC-----CcEEEEEccCce
Q 017314 279 N--------LHNLFDIRSLEVC--GSLRATGNRVASNWSRSCISPDESYVAAGSAD-----GSVYIWSISKAD 336 (373)
Q Consensus 279 ~--------~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~D-----g~i~iwd~~~~~ 336 (373)
. .+.+||..+.+.. ..+.. .... ..+...++..++.|+.+ ..|.+||..+.+
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~--~r~~----~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNF--PRIN----ASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCc--cccc----ceEEEECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 2 3677887654322 11111 0100 11122367777777654 467888877653
No 402
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.46 E-value=3.3 Score=41.74 Aligned_cols=240 Identities=13% Similarity=0.170 Sum_probs=118.1
Q ss_pred CcEEEEEEcC-C---CCEEEEee---CCCcEEEEeCCCC--c-eeeeccccccceEEEE--EcC--CCCEEEEEeCCCcE
Q 017314 89 GGCASILFEY-N---SARLISGG---QDKSIKLWDTNTG--S-LSSTLYGCLGSVLDLA--ITH--DNRSVIAASSSNNL 154 (373)
Q Consensus 89 ~~v~~~~~~~-~---~~~l~s~s---~D~~v~iwd~~~~--~-~~~~~~~~~~~v~~~~--~~~--~~~~l~s~s~d~~i 154 (373)
++|..++.-. + ...++|++ .||++|+....-+ . -...+.| ...++.+. +.+ |. +++.+=-+.|
T Consensus 354 gPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~eT- 430 (1096)
T KOG1897|consen 354 GPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFISET- 430 (1096)
T ss_pred cceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEeccce-
Confidence 5777665432 2 34677666 5899999864322 1 1122334 34455555 322 22 4443333332
Q ss_pred EEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeC
Q 017314 155 YVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI 234 (373)
Q Consensus 155 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~ 234 (373)
++..+...-......+-......+.++...++.++=.. ...||+.+-. ........+...+....+.+...++.++.
T Consensus 431 rvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~~ti~~~~~n~sqVvvA~~ 507 (1096)
T KOG1897|consen 431 RVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGKITIGVVSANASQVVVAGG 507 (1096)
T ss_pred EEEEEccceEEeccccccccCceEEEEccCCceEEEEe-cccEEEEcch--hhhhcccCCCceEEEEEeecceEEEEecC
Confidence 33333222111122333333344444444444433221 2346666543 12222333333444444445556777777
Q ss_pred CCcEEEEECCCCeeeEEEecccccceEEEEEcCCC---C---EEEEeeCCCeEEEEE-ccccceeeeeeecCCeeecCee
Q 017314 235 DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG---N---IILTSGRDNLHNLFD-IRSLEVCGSLRATGNRVASNWS 307 (373)
Q Consensus 235 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~---~l~s~~~d~~i~~~d-~~~~~~~~~~~~~~~~~~~~~~ 307 (373)
++.+-..++..+.+.......-...|.|+.++|-+ + +++.|.-+..+.+.- ................+....-
T Consensus 508 ~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl 587 (1096)
T KOG1897|consen 508 GLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSIL 587 (1096)
T ss_pred ccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchhee
Confidence 77777777766553222222223679999999742 2 677776555443322 2222222222122223333333
Q ss_pred eeEECCCCcEEEEEeCCCcEEEEEccC
Q 017314 308 RSCISPDESYVAAGSADGSVYIWSISK 334 (373)
Q Consensus 308 ~~~~s~~~~~l~sgs~Dg~i~iwd~~~ 334 (373)
..++-.|..||.++..||.+..+-+..
T Consensus 588 ~~~~e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 588 LTTFEGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred eEEeeccceEEEEEcCCceEEEEEEEc
Confidence 455667789999999999987775543
No 403
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=1.2 Score=36.37 Aligned_cols=172 Identities=14% Similarity=0.119 Sum_probs=95.3
Q ss_pred CCCEEEEeeC--CCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCeeEEEeecCCCcE
Q 017314 99 NSARLISGGQ--DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVI-AASSSNNLYVWDVNSGRVRHTLTGHTDKV 175 (373)
Q Consensus 99 ~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~h~~~v 175 (373)
+|.++.+.|. ...|++||+.+++...+-.-....+..=-...-+.++. -.-.++...++|.++-+.+..+.- .+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 5677788775 45799999999877543221111111111111223332 334567778888887766554431 2233
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeec------CceeEEEEccCCCEEEEEeCCCcEEEEECCCCeee
Q 017314 176 CAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH------SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL 249 (373)
Q Consensus 176 ~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~------~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~ 249 (373)
+.++. ++..++.++...++..-|..+-....++... ...+.+.|- ||...+-.-.+..|-..|..+|+++
T Consensus 134 WgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~ 209 (262)
T COG3823 134 WGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVV 209 (262)
T ss_pred eeeec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEE
Confidence 44432 3344666655666776666544333333221 123444442 6666666666777777788888877
Q ss_pred EEEecc-----------cccceEEEEEcCCCC-EEEEe
Q 017314 250 SEVAAH-----------SLAAVTSISLSRSGN-IILTS 275 (373)
Q Consensus 250 ~~~~~~-----------~~~~v~~~~~~~~~~-~l~s~ 275 (373)
..+... .....+.+++.|++. ++++|
T Consensus 210 ~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 210 AWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 655432 123567788888874 45554
No 404
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=1.2 Score=36.35 Aligned_cols=106 Identities=12% Similarity=0.082 Sum_probs=56.9
Q ss_pred CCCEEEEEeCCC--cEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCcee
Q 017314 141 DNRSVIAASSSN--NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCN 218 (373)
Q Consensus 141 ~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~ 218 (373)
+|.++.+.+.-| .|++||+.+++.+.+-.--.+.+..--........-.-.-.||.-..+|..+-+++..+....+-.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 344555555433 699999999987655432222222111111111122223346666777777766666665555544
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCee
Q 017314 219 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKL 248 (373)
Q Consensus 219 ~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~ 248 (373)
.++ .|+..|+.+....+++.-|..+...
T Consensus 135 gLt--~d~~~LimsdGsatL~frdP~tfa~ 162 (262)
T COG3823 135 GLT--SDDKNLIMSDGSATLQFRDPKTFAE 162 (262)
T ss_pred eee--cCCcceEeeCCceEEEecCHHHhhh
Confidence 444 3555566665555677766655443
No 405
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.32 E-value=1.7 Score=37.46 Aligned_cols=154 Identities=12% Similarity=0.163 Sum_probs=88.4
Q ss_pred eeeeEEeecCceeEEEEccCCC-EEEEEeCCCc-EEEEECCCCeeeEEEeccccc-ceEEEEEcCCCCEEEEeeCC----
Q 017314 206 YCVNTIIFHSNCNALAFSMDGQ-TIFSGHIDGN-LRLWDIQTGKLLSEVAAHSLA-AVTSISLSRSGNIILTSGRD---- 278 (373)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~-~l~sg~~dg~-i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d---- 278 (373)
+++.....+..+-.++++|.-. -++-+-.-|+ ..++|....+.+..+.....- -.--=.|+|||.+|.+.-.|
T Consensus 59 k~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~ 138 (366)
T COG3490 59 KIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPN 138 (366)
T ss_pred ceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCC
Confidence 3333444445555677777543 3444555554 568888877766555332210 01112589999999876433
Q ss_pred -CeEEEEEccc-cceeeeeeecCCeeecCeeeeEECCCCcEEEEEeC------C-C-----------cEEEEEccCceEE
Q 017314 279 -NLHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA------D-G-----------SVYIWSISKADIV 338 (373)
Q Consensus 279 -~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~------D-g-----------~i~iwd~~~~~~~ 338 (373)
+.|-+||.+. ...++++..++-.-. .+.+.+||+.|+.+.. | | ++.+.|-.+|.++
T Consensus 139 rGViGvYd~r~~fqrvgE~~t~GiGpH----ev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~li 214 (366)
T COG3490 139 RGVIGVYDAREGFQRVGEFSTHGIGPH----EVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLI 214 (366)
T ss_pred CceEEEEecccccceecccccCCcCcc----eeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchh
Confidence 5789999874 345566665543322 2457899999887543 1 1 2333343444443
Q ss_pred EE--ec--cCCccEEEEEEcCCCCcEEEE
Q 017314 339 RT--LK--EHTAPVLSCSWSGLGKPLASA 363 (373)
Q Consensus 339 ~~--l~--~h~~~V~~~~~s~~g~~l~s~ 363 (373)
.+ |. -+.-+|..++..+||...+.+
T Consensus 215 ekh~Lp~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 215 EKHTLPASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred hhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence 22 22 244568888998888766543
No 406
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.15 E-value=0.65 Score=43.08 Aligned_cols=135 Identities=16% Similarity=0.196 Sum_probs=80.1
Q ss_pred CCCEEE-EEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCC--------EEEEeeCCCeEEEEEccccc-eeee
Q 017314 225 DGQTIF-SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN--------IILTSGRDNLHNLFDIRSLE-VCGS 294 (373)
Q Consensus 225 ~g~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~l~s~~~d~~i~~~d~~~~~-~~~~ 294 (373)
|..+|+ .|+....++-.|+..|+.+.+...+. .+ -+.|.|+.+ .|+.-|. ..|--.|.|-.. .+..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~d--dv-vVqy~p~~kf~qmt~eqtlvGlS~-~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKD--DV-VVQYNPYFKFQQMTDEQTLVGLSD-YSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCC--cc-eeecCCchhHHhcCccceEEeecc-cceEEecccccCCceee
Confidence 444554 46666778888999999998888775 23 567777542 3444444 344344544221 1111
Q ss_pred eeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEe
Q 017314 295 LRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASAD 364 (373)
Q Consensus 295 ~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s 364 (373)
...........++. .-.....|+|.||..|.|++||--....-..+.+-...|..+..+.+|++|.+..
T Consensus 554 ~esKdY~tKn~Fss-~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 554 VESKDYKTKNKFSS-GMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC 622 (776)
T ss_pred eeehhccccccccc-cccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee
Confidence 11111111111111 1123457999999999999999654444445566677899999999999775543
No 407
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.03 E-value=4.3 Score=40.60 Aligned_cols=93 Identities=11% Similarity=0.146 Sum_probs=50.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeE
Q 017314 132 SVLDLAITHDNRSVIAASSSNNLYVWDVNS-GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT 210 (373)
Q Consensus 132 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~ 210 (373)
.|..+.++++|.+++..|..+.+ |-.+.. ......+.+-...+.|-.+ +.+..++ +.+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~-~v~~~~~-~~~------------------ 144 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTV-PVDERFF-TSN------------------ 144 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEE-Eechhhc-cCC------------------
Confidence 57778889999988877775533 333321 1111122222233333222 1122111 110
Q ss_pred EeecCceeEEEEccC---CCEEEEEeCCCcEEEEECCCCe
Q 017314 211 IIFHSNCNALAFSMD---GQTIFSGHIDGNLRLWDIQTGK 247 (373)
Q Consensus 211 ~~~~~~~~~~~~~~~---g~~l~sg~~dg~i~iwd~~~~~ 247 (373)
....+..+.|+|. +..|+.=..|+++|+||+...+
T Consensus 145 --~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 145 --SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred --CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 1123556778885 5788888889999999996543
No 408
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.93 E-value=3 Score=38.38 Aligned_cols=194 Identities=17% Similarity=0.185 Sum_probs=85.6
Q ss_pred CCCEEEEEe-CCCcEEEEEcCCC----eeEEEeec---CC--CcE--EEEEEeeCCCCEEEEE--eCC----CcEEEEEc
Q 017314 141 DNRSVIAAS-SSNNLYVWDVNSG----RVRHTLTG---HT--DKV--CAVDVSKISSRHVVSA--AYD----RTLKVWDL 202 (373)
Q Consensus 141 ~~~~l~s~s-~d~~i~iwd~~~~----~~~~~~~~---h~--~~v--~~~~~~~~~~~~~~s~--s~D----~~i~vwd~ 202 (373)
+.++|+..+ ....|+|.|+.+. +..+++.. +. +-. ..+.+-| +++.++|+ ..+ |-+-+.|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcC
Confidence 446777777 5678999998743 44445542 11 111 1122223 46667764 222 44566666
Q ss_pred cCCeeeeEEeecCc----eeEEEEccCCCEEEEEeC--------------------CCcEEEEECCCCeeeEEEeccccc
Q 017314 203 HKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHI--------------------DGNLRLWDIQTGKLLSEVAAHSLA 258 (373)
Q Consensus 203 ~~~~~~~~~~~~~~----~~~~~~~~~g~~l~sg~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~ 258 (373)
++-........... ...+-+.|..+.++|... ..++.+||+.+.+.++++......
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 55444333322211 245667777777776543 458999999999999998765433
Q ss_pred -ceEEEEEc--CCCCEEEE--eeCCCeEEEEEccccc----eeeeeeec---CC---e-------eecCeeeeEECCCCc
Q 017314 259 -AVTSISLS--RSGNIILT--SGRDNLHNLFDIRSLE----VCGSLRAT---GN---R-------VASNWSRSCISPDES 316 (373)
Q Consensus 259 -~v~~~~~~--~~~~~l~s--~~~d~~i~~~d~~~~~----~~~~~~~~---~~---~-------~~~~~~~~~~s~~~~ 316 (373)
....+.|. |+..+=++ +-.....++|.-...+ .+..+... +. . +..-.....+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 34455554 44444333 2223334444423221 12222111 00 0 011223456899999
Q ss_pred EEEEE-eCCCcEEEEEccCc
Q 017314 317 YVAAG-SADGSVYIWSISKA 335 (373)
Q Consensus 317 ~l~sg-s~Dg~i~iwd~~~~ 335 (373)
||... -.+|.|+.||+...
T Consensus 325 fLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEEEEETTTTEEEEEE-SST
T ss_pred EEEEEcccCCcEEEEecCCC
Confidence 98655 46899999999763
No 409
>PHA02790 Kelch-like protein; Provisional
Probab=94.83 E-value=2.4 Score=40.38 Aligned_cols=142 Identities=11% Similarity=0.027 Sum_probs=66.6
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCeeEEE--eecCCCcEEEEEEeeCCCCEEEEEeCC--CcEEEEEccCCeeeeEE
Q 017314 141 DNRSVIAASSS-----NNLYVWDVNSGRVRHT--LTGHTDKVCAVDVSKISSRHVVSAAYD--RTLKVWDLHKGYCVNTI 211 (373)
Q Consensus 141 ~~~~l~s~s~d-----~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~~s~s~D--~~i~vwd~~~~~~~~~~ 211 (373)
++..++.|+.+ .++..||+.+++-... +.........+. .++...+.|+.+ .++..||..++.....-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~---~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP---ANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE---ECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 34455666654 3577788877653221 111111111121 245566677754 45777887665432211
Q ss_pred eecCc-eeEEEEccCCCEEEEEeCCC---cEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q 017314 212 IFHSN-CNALAFSMDGQTIFSGHIDG---NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR 287 (373)
Q Consensus 212 ~~~~~-~~~~~~~~~g~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~ 287 (373)
..+.. ....+..-+|...+.|+.++ .+..||..+.+-...-.... ..-......-++.+.+.|+ ...+||..
T Consensus 348 ~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~-~r~~~~~~~~~~~IYv~GG---~~e~ydp~ 423 (480)
T PHA02790 348 SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY-PHYKSCALVFGRRLFLVGR---NAEFYCES 423 (480)
T ss_pred CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC-ccccceEEEECCEEEEECC---ceEEecCC
Confidence 11111 11122233677667777654 47788987765432111110 1111111123456666664 35677776
Q ss_pred cc
Q 017314 288 SL 289 (373)
Q Consensus 288 ~~ 289 (373)
+.
T Consensus 424 ~~ 425 (480)
T PHA02790 424 SN 425 (480)
T ss_pred CC
Confidence 53
No 410
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.61 E-value=1.8 Score=42.18 Aligned_cols=112 Identities=13% Similarity=0.182 Sum_probs=67.3
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEc--CCCCEEEEeeCCCeEEEEEcccc------
Q 017314 218 NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLS--RSGNIILTSGRDNLHNLFDIRSL------ 289 (373)
Q Consensus 218 ~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~d~~i~~~d~~~~------ 289 (373)
..+.-+.-++..+.-+....+.|||.+.+....+........|..+.|. |+++.+++.|..+.|.++.-...
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence 3444455555555555556799999999886655544334688888874 78899999999999998864321
Q ss_pred ---ceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEc
Q 017314 290 ---EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI 332 (373)
Q Consensus 290 ---~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~ 332 (373)
..+..+.... ....++...++-++|.+++.++ ..+.|++-
T Consensus 113 p~w~~i~~i~i~~-~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 113 PSWAPIRKIDISS-HTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cccceeEEEEeec-CCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1222221110 0111223345567776665443 34777764
No 411
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.45 E-value=0.81 Score=42.21 Aligned_cols=97 Identities=15% Similarity=0.187 Sum_probs=68.1
Q ss_pred cccccccceEEecCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEE-EEEcCC-C--------
Q 017314 73 ESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLD-LAITHD-N-------- 142 (373)
Q Consensus 73 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~-~~~~~~-~-------- 142 (373)
+...|..+...|......+.+++.+|++++.|+...=|.|.++|+.++..++.++|..+.-.. +..... .
T Consensus 292 ~~~~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~ 371 (415)
T PF14655_consen 292 EPAAPLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNS 371 (415)
T ss_pred CCCcccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccc
Confidence 344566677788888888999999999888887766799999999999888888776543211 111111 0
Q ss_pred -------C--EEEEEeCCCcEEEEEcCCCeeEEEee
Q 017314 143 -------R--SVIAASSSNNLYVWDVNSGRVRHTLT 169 (373)
Q Consensus 143 -------~--~l~s~s~d~~i~iwd~~~~~~~~~~~ 169 (373)
. +++-+-.-|.|.||++++|..+..+.
T Consensus 372 ~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 372 PKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred cCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 1 23456677889999988877665543
No 412
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.44 E-value=2.3 Score=38.89 Aligned_cols=141 Identities=14% Similarity=0.140 Sum_probs=72.9
Q ss_pred cEEEEEEcCCCCEEEEee-----------CCC-cEEEEeCCC--Cc--eeeeccccccceEEEEEcCCCCEEEEEeCCCc
Q 017314 90 GCASILFEYNSARLISGG-----------QDK-SIKLWDTNT--GS--LSSTLYGCLGSVLDLAITHDNRSVIAASSSNN 153 (373)
Q Consensus 90 ~v~~~~~~~~~~~l~s~s-----------~D~-~v~iwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~ 153 (373)
....++|.++|+.+++-. ..+ .|.+++-.+ |+ ....+.........+++.+++ |+.++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence 345688999998777643 223 677776433 22 123343334456788898888 444455544
Q ss_pred EEEEEcCCC-----ee---EEEeec----CCCcEEEEEEeeCCCCEEEEEeCC-------------------CcEEEEEc
Q 017314 154 LYVWDVNSG-----RV---RHTLTG----HTDKVCAVDVSKISSRHVVSAAYD-------------------RTLKVWDL 202 (373)
Q Consensus 154 i~iwd~~~~-----~~---~~~~~~----h~~~v~~~~~~~~~~~~~~s~s~D-------------------~~i~vwd~ 202 (373)
.++.|.+.. +. ...+.. +......+.+.+ ++.+.++-+.. +.|.-+|.
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 444454321 21 112222 123355677776 45554443311 33444444
Q ss_pred cCCeeeeEEeecCceeEEEEccCCCEEEEEe
Q 017314 203 HKGYCVNTIIFHSNCNALAFSMDGQTIFSGH 233 (373)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~ 233 (373)
..+..............++|+|+|.++++-.
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 4333211112223456789999998876543
No 413
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.39 E-value=3.9 Score=37.19 Aligned_cols=224 Identities=15% Similarity=0.124 Sum_probs=100.4
Q ss_pred EEEcCCCCEEEEEeC-CC--cEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEe
Q 017314 136 LAITHDNRSVIAASS-SN--NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII 212 (373)
Q Consensus 136 ~~~~~~~~~l~s~s~-d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~ 212 (373)
=+|.+||+.|+.++. |+ .+.+.|+.+++..+--.+-.+......+++ .++.++-....++|+--|+.+.+....+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 357889977665554 54 677778888875543332222222333455 45666555566788888998876544444
Q ss_pred ecCcee-EEEE--ccCCCEEEEEe---C-------------------CCcEEEEECCCCeeeEEEecccccceEEEEEcC
Q 017314 213 FHSNCN-ALAF--SMDGQTIFSGH---I-------------------DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR 267 (373)
Q Consensus 213 ~~~~~~-~~~~--~~~g~~l~sg~---~-------------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 267 (373)
.+..-. ...+ +.|+..++-.- . ...|...|+.+|+....+... ..+.-+.|+|
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~--~wlgH~~fsP 197 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT--DWLGHVQFSP 197 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES--S-EEEEEEET
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC--ccccCcccCC
Confidence 444422 2333 34565544221 1 224555677777654433322 4677788888
Q ss_pred CCCEEEEeeC----CCe-EEEEEccccc-eeeeeeecCCeeecCeeeeEECCCCcEEEE-----EeCCCcEEEEEccCce
Q 017314 268 SGNIILTSGR----DNL-HNLFDIRSLE-VCGSLRATGNRVASNWSRSCISPDESYVAA-----GSADGSVYIWSISKAD 336 (373)
Q Consensus 268 ~~~~l~s~~~----d~~-i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-----gs~Dg~i~iwd~~~~~ 336 (373)
....+++=+. +.. -++|-++.-. ....+..+... ....--.+.|||..|.- ++.+..|.-+|+.+++
T Consensus 198 ~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~--e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 198 TDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEG--ESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp TEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TT--EEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred CCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCC--cccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence 7765555332 222 3677665321 11111111110 11111237889986543 2334567777887775
Q ss_pred EEEEeccCCccEEEEEEcCCCCcEEEEeCC
Q 017314 337 IVRTLKEHTAPVLSCSWSGLGKPLASADKN 366 (373)
Q Consensus 337 ~~~~l~~h~~~V~~~~~s~~g~~l~s~s~d 366 (373)
....... .+-...--|+||+++|-=+.|
T Consensus 276 ~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 276 RRRLMEM--PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEEEEE---SEEEEEE-TTSSEEEEEE--
T ss_pred ceEEEeC--CceeeeEEcCCCCEEEecCCC
Confidence 5332221 133455667888887654444
No 414
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=3.2 Score=35.99 Aligned_cols=260 Identities=13% Similarity=0.108 Sum_probs=132.7
Q ss_pred CCEEEEeeCCCcEEEEeCCCCceeeecc--ccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe---eEEEeecCCCc
Q 017314 100 SARLISGGQDKSIKLWDTNTGSLSSTLY--GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR---VRHTLTGHTDK 174 (373)
Q Consensus 100 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~---~~~~~~~h~~~ 174 (373)
+++...+-.+.-++|.|+.+......+. .-.+-...+.+ .|++...+..|.-.-+.|+.+.+ +...+......
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d 173 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGD 173 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCC
Confidence 5677778888899999998754332211 11133334444 57788888878888888886542 33333333333
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEEccCCee---eeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEE
Q 017314 175 VCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC---VNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE 251 (373)
Q Consensus 175 v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~ 251 (373)
...+++ ++++...+.+|+-+.+-|+..... +........+.++..+++-.+++.. +--+-+-|..+.+.+..
T Consensus 174 ~~~v~I---SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp~~ 248 (370)
T COG5276 174 THDVAI---SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSPTV 248 (370)
T ss_pred ceeEEE---ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEEecCCCCCceE
Confidence 344444 356777788999999999865422 2222222245666666665555443 44466777766554443
Q ss_pred EecccccceEEE-EEcCCCCEEEEeeCCCeEEEEEccccc---eeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcE
Q 017314 252 VAAHSLAAVTSI-SLSRSGNIILTSGRDNLHNLFDIRSLE---VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSV 327 (373)
Q Consensus 252 ~~~~~~~~v~~~-~~~~~~~~l~s~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i 327 (373)
+.......+.++ .+.-.+++......+.-+-+.|+.... ....+...+... .-+...+.++..+-.+ +.
T Consensus 249 ~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a------~gi~ay~~y~yiadkn-~g 321 (370)
T COG5276 249 FGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQA------AGIRAYGNYNYIADKN-TG 321 (370)
T ss_pred eeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccc------cceEEecCeeEeccCC-ce
Confidence 322221222222 122234444444344334444443211 000010000000 0011123333333222 23
Q ss_pred EEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 328 YIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 328 ~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
.+-+....+......+-...+.+++.+-+.+++.+...++.+.||+
T Consensus 322 ~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 322 AVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred EEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 3334433333322233333456677777778888999999998884
No 415
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.14 E-value=2.7 Score=40.91 Aligned_cols=98 Identities=19% Similarity=0.336 Sum_probs=66.4
Q ss_pred CEEEEEeCCCcEEEEEccCCeeeeEEee--cCceeEEEEc--cCCCEEEEEeCCCcEEEEECC---------CCeeeEEE
Q 017314 186 RHVVSAAYDRTLKVWDLHKGYCVNTIIF--HSNCNALAFS--MDGQTIFSGHIDGNLRLWDIQ---------TGKLLSEV 252 (373)
Q Consensus 186 ~~~~s~s~D~~i~vwd~~~~~~~~~~~~--~~~~~~~~~~--~~g~~l~sg~~dg~i~iwd~~---------~~~~~~~~ 252 (373)
+..+.-+.-.++.|||.+.+.......+ +..+..+.|. |+|+.+++.+..+.|.++--. +...+..+
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i 121 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI 121 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence 3344444556789999998876555444 5567777764 799999999999999998542 11233333
Q ss_pred --ecccccceEEEEEcCCCCEEEEeeCCCeEEEEE
Q 017314 253 --AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFD 285 (373)
Q Consensus 253 --~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d 285 (373)
..+...+|.+..|-++|.+++++| +.+.++|
T Consensus 122 ~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 122 DISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred EeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 333445788899999998777664 3566665
No 416
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.08 E-value=0.41 Score=40.21 Aligned_cols=63 Identities=25% Similarity=0.532 Sum_probs=48.3
Q ss_pred EECCCCcEEEEEeCCCcEEEEEccCceEEEE-------ec-------cCCccEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 310 CISPDESYVAAGSADGSVYIWSISKADIVRT-------LK-------EHTAPVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 310 ~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~-------l~-------~h~~~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
.+..++.||++-+.+|.+++||+.+++.+.. +. .....|..+..+.+|.-|++-+ +|....|+
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 3566899999999999999999998876432 22 2456789999999998887765 46667664
No 417
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.68 E-value=4.1 Score=34.97 Aligned_cols=187 Identities=14% Similarity=0.106 Sum_probs=117.1
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEE-Ee
Q 017314 90 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH-TL 168 (373)
Q Consensus 90 ~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~ 168 (373)
.-+.++-++||..-+++...+.|--.|..+|+....--+.......+...||+..-++-+.. -|.-.|.++.+... .+
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 34578888999999999999999999999998766555555566677888998876654444 56666666654322 11
Q ss_pred e-cC-CCcEEEEEEeeCCCCEEEEEeC---------CCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCc
Q 017314 169 T-GH-TDKVCAVDVSKISSRHVVSAAY---------DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGN 237 (373)
Q Consensus 169 ~-~h-~~~v~~~~~~~~~~~~~~s~s~---------D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~ 237 (373)
. .| ........|.+ .+++-+++.. -+.|++|+...| ...+.++..|||..-++.-.+..
T Consensus 142 p~~~a~~nlet~vfD~-~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG---------~gpyGi~atpdGsvwyaslagna 211 (353)
T COG4257 142 PLEHADANLETAVFDP-WGNLWFTGQIGAYGRLDPARNVISVFPAPQG---------GGPYGICATPDGSVWYASLAGNA 211 (353)
T ss_pred ccccCCCcccceeeCC-CccEEEeeccccceecCcccCceeeeccCCC---------CCCcceEECCCCcEEEEeccccc
Confidence 1 12 12233333443 3444444431 133444443322 23567889999999998888888
Q ss_pred EEEEECCCCeeeEEEeccc--ccceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q 017314 238 LRLWDIQTGKLLSEVAAHS--LAAVTSISLSRSGNIILTSGRDNLHNLFDIRS 288 (373)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~ 288 (373)
|-..|..++.. ..+.... ...-..+..+|.++.-++....+.+.-||...
T Consensus 212 iaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 212 IARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred eEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 88888877632 2222111 12345566778888777776667776666543
No 418
>PRK10115 protease 2; Provisional
Probab=93.68 E-value=8.5 Score=38.56 Aligned_cols=192 Identities=8% Similarity=0.043 Sum_probs=96.8
Q ss_pred cEEEEEEcCCCCEEEEeeC-----CCcEEEEeCCCCceeee-ccccccceEEEEEcCCCCEEEEEeCC------CcEEEE
Q 017314 90 GCASILFEYNSARLISGGQ-----DKSIKLWDTNTGSLSST-LYGCLGSVLDLAITHDNRSVIAASSS------NNLYVW 157 (373)
Q Consensus 90 ~v~~~~~~~~~~~l~s~s~-----D~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~s~d------~~i~iw 157 (373)
.+..+.++|||++|+-+-. ...|++-|+.++..+.. +.+. . ..++|.+|++.|+....+ ..|+.+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 3667789999998765543 23588899988864322 2221 1 458999999877665543 357778
Q ss_pred EcCCC--eeEEEeecCCCcEEEEEEeeCCCCEEEEEe---CCCcEEEEEcc--CCeeeeEEeecCceeEEEEccCCCEEE
Q 017314 158 DVNSG--RVRHTLTGHTDKVCAVDVSKISSRHVVSAA---YDRTLKVWDLH--KGYCVNTIIFHSNCNALAFSMDGQTIF 230 (373)
Q Consensus 158 d~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s---~D~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~g~~l~ 230 (373)
++.++ +-...+...........+...++.+++..+ .++.+.+++.. .+...........+..-..+. +..++
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHY-QHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeC-CCEEE
Confidence 88877 333444433333331222232455544322 34678888853 332211122222221111122 23333
Q ss_pred EEeC----CCcEEEEECCCCeeeEEEecc-cccceEEEEEcCCCCEEEEeeCCCeEEEEEc
Q 017314 231 SGHI----DGNLRLWDIQTGKLLSEVAAH-SLAAVTSISLSRSGNIILTSGRDNLHNLFDI 286 (373)
Q Consensus 231 sg~~----dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~ 286 (373)
.-+. ...|-..++........+..+ ....+..+.+. .+.++++...++.-+++-+
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 2222 123333344421222334444 22467777777 3345556666666555443
No 419
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.41 E-value=3.1 Score=40.65 Aligned_cols=183 Identities=13% Similarity=0.196 Sum_probs=85.3
Q ss_pred CCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeee-EEe---ecCceeEEEEccCC
Q 017314 151 SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN-TII---FHSNCNALAFSMDG 226 (373)
Q Consensus 151 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~-~~~---~~~~~~~~~~~~~g 226 (373)
-..|+|++. +|+.+..+.....++..+.|+. ...++.-..||++.++++....... .+. ....+..+.+..+|
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc
Confidence 346888886 4555554444444666777764 5678889999999999985322111 010 01123333333355
Q ss_pred CEEEEEeCCCcEEEEECCCCeeeEEEeccc--ccceEEEEEcCCCC---EEEEeeCCCeEEEEEccccceeeeeeec-CC
Q 017314 227 QTIFSGHIDGNLRLWDIQTGKLLSEVAAHS--LAAVTSISLSRSGN---IILTSGRDNLHNLFDIRSLEVCGSLRAT-GN 300 (373)
Q Consensus 227 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~---~l~s~~~d~~i~~~d~~~~~~~~~~~~~-~~ 300 (373)
-.+++. +|.+.+-.-.....+.++..-. ...-++....+++. .++--...-...++-... .....+ ..
T Consensus 140 Vavlt~--~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~----~~~q~~~~~ 213 (829)
T KOG2280|consen 140 VAVLTV--SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEE----SRVQLHALS 213 (829)
T ss_pred eEEEec--CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceec----ccccccccC
Confidence 333333 3444332211111111111100 01112222222111 111110000000010000 000111 11
Q ss_pred eeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEec
Q 017314 301 RVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLK 342 (373)
Q Consensus 301 ~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~ 342 (373)
.....|..+.+||..++|+-=..+|.|.+-++...+.+..+.
T Consensus 214 ~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 214 WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 112445667899999999999999999998887766655554
No 420
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.35 E-value=10 Score=38.39 Aligned_cols=194 Identities=15% Similarity=0.156 Sum_probs=114.9
Q ss_pred CCEEEEeeCCCcEEEEeCCCCceeeeccccccc--------eEEEEEc----------------CCCCEEEEEeCCCcEE
Q 017314 100 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGS--------VLDLAIT----------------HDNRSVIAASSSNNLY 155 (373)
Q Consensus 100 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~--------v~~~~~~----------------~~~~~l~s~s~d~~i~ 155 (373)
+..|+.++.++.|.-.|..+|+.+=.+...... ...+++- .++..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567888888999999999998875443221110 0112221 2345788899999999
Q ss_pred EEEcCCCeeEEEeecCCCcEE-------------EEEEee-CCCCEEEEEeC----------CCcEEEEEccCCeeeeEE
Q 017314 156 VWDVNSGRVRHTLTGHTDKVC-------------AVDVSK-ISSRHVVSAAY----------DRTLKVWDLHKGYCVNTI 211 (373)
Q Consensus 156 iwd~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~~~~~~s~s~----------D~~i~vwd~~~~~~~~~~ 211 (373)
-.|..+|+....+.. ...|. ...-.| .....++.|+. +|.|+-+|+++|+.+-.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876532 11110 000001 01345555643 688999999999876554
Q ss_pred eec----------------C--ce-eEEEEccCCCEEEEEe------------------CCCcEEEEECCCCeeeEEEec
Q 017314 212 IFH----------------S--NC-NALAFSMDGQTIFSGH------------------IDGNLRLWDIQTGKLLSEVAA 254 (373)
Q Consensus 212 ~~~----------------~--~~-~~~~~~~~g~~l~sg~------------------~dg~i~iwd~~~~~~~~~~~~ 254 (373)
... . ++ ...++.|....++.+. ..+.|.-.|.++|+....+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 321 0 00 2345555444444321 234566778889988776644
Q ss_pred -ccc-------cceEEEEEcC-CCC---EEEEeeCCCeEEEEEccccceeee
Q 017314 255 -HSL-------AAVTSISLSR-SGN---IILTSGRDNLHNLFDIRSLEVCGS 294 (373)
Q Consensus 255 -~~~-------~~v~~~~~~~-~~~---~l~s~~~d~~i~~~d~~~~~~~~~ 294 (373)
|+. ....-+.+.. +|+ .++.++.++.+.++|-++++.+-.
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 220 1122223333 553 788899999999999888776543
No 421
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.12 E-value=5.4 Score=34.64 Aligned_cols=188 Identities=12% Similarity=0.165 Sum_probs=116.0
Q ss_pred ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeec--CceeEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 017314 169 TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH--SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG 246 (373)
Q Consensus 169 ~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~ 246 (373)
.+-+..+.++.|+| +.+.+++......-.||=...|..+++++.. .....+.+.-+|+++++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 44555689999998 5677877777777778877788888887644 34667888888888888888888888876554
Q ss_pred eeeEE-----Ee----cccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeee------cCCeeecCeeeeEE
Q 017314 247 KLLSE-----VA----AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA------TGNRVASNWSRSCI 311 (373)
Q Consensus 247 ~~~~~-----~~----~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~ 311 (373)
..+.. +. .+.....-.++|+|....|..+-.-+-+.+|........-.... .........+...|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 22211 11 12124567899999999888888877788877653221101100 00011112233445
Q ss_pred CC-CCcEEEEEeCCCcEEEEEccCceEEEEec---c-C--C---ccEEEEEEcCCCC
Q 017314 312 SP-DESYVAAGSADGSVYIWSISKADIVRTLK---E-H--T---APVLSCSWSGLGK 358 (373)
Q Consensus 312 s~-~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~---~-h--~---~~V~~~~~s~~g~ 358 (373)
++ .+.+|+-+-+++.+.-.|... .++..+. + | . -.-..++-.++|.
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G-~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~ 296 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSG-EVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN 296 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCC-CeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence 53 567777777888777776653 3333332 1 1 1 1235667766665
No 422
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.08 E-value=0.9 Score=38.16 Aligned_cols=63 Identities=14% Similarity=0.300 Sum_probs=41.6
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCCceeee-------cc-------ccccceEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 017314 96 FEYNSARLISGGQDKSIKLWDTNTGSLSST-------LY-------GCLGSVLDLAITHDNRSVIAASSSNNLYVWDV 159 (373)
Q Consensus 96 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-------~~-------~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 159 (373)
+..++++|++-..+|.+++||+.+++.+.. +. .....|..+.++.+|.-+++-+. +..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEecc
Confidence 556788999999999999999998765422 11 23345666666666655554443 45566654
No 423
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.93 E-value=6.3 Score=34.88 Aligned_cols=149 Identities=14% Similarity=0.140 Sum_probs=74.0
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEE-ccccceeee
Q 017314 216 NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFD-IRSLEVCGS 294 (373)
Q Consensus 216 ~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d-~~~~~~~~~ 294 (373)
.+..+..++||.++++++.-....-||.-...- ..........|.++.|+|++.+.+.+ +.+.+++=+ ....+ +
T Consensus 146 s~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~---~ 220 (302)
T PF14870_consen 146 SINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE---T 220 (302)
T ss_dssp -EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE---E
T ss_pred eeEeEEECCCCcEEEEECcccEEEEecCCCccc-eEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc---c
Confidence 466777889999888876655566787543211 11222223689999999998876655 888887776 12111 1
Q ss_pred eeecCCe---eecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEe---ccCCccEEEEEEcCCCCcEEEEeCCCe
Q 017314 295 LRATGNR---VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL---KEHTAPVLSCSWSGLGKPLASADKNGV 368 (373)
Q Consensus 295 ~~~~~~~---~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l---~~h~~~V~~~~~s~~g~~l~s~s~dg~ 368 (373)
+..+..+ ....+..+++.+++...++|+.. .+. .....|+-=+.- ..-....+.+.|.++.+-+| -+.+|.
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ 297 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGV 297 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEESTT--EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTE
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCCc-cEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcE
Confidence 1111111 11122345677787777766644 443 344444432222 22345678899876644444 457888
Q ss_pred EEEc
Q 017314 369 VCVW 372 (373)
Q Consensus 369 i~iW 372 (373)
|--|
T Consensus 298 ll~~ 301 (302)
T PF14870_consen 298 LLRY 301 (302)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7655
No 424
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.77 E-value=0.48 Score=27.91 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=25.3
Q ss_pred CcEEEEEEcCCCC---EEEEeeCCCcEEEEeCCC
Q 017314 89 GGCASILFEYNSA---RLISGGQDKSIKLWDTNT 119 (373)
Q Consensus 89 ~~v~~~~~~~~~~---~l~s~s~D~~v~iwd~~~ 119 (373)
|.|.++.|+|++. +|+-+-.-+.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 5688999998654 777777779999999985
No 425
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.67 E-value=0.83 Score=46.46 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=67.9
Q ss_pred EecccccceEEEEEcCCCCEEEEe--eCCCeEEEEEccccceeeeee-----ecCCeeecCe--eeeEECCC-CcEEEEE
Q 017314 252 VAAHSLAAVTSISLSRSGNIILTS--GRDNLHNLFDIRSLEVCGSLR-----ATGNRVASNW--SRSCISPD-ESYVAAG 321 (373)
Q Consensus 252 ~~~~~~~~v~~~~~~~~~~~l~s~--~~d~~i~~~d~~~~~~~~~~~-----~~~~~~~~~~--~~~~~s~~-~~~l~sg 321 (373)
+..+....+..+...+|+...+.. +.+-.|..||++......... .+........ ....+.|. ....+.+
T Consensus 95 ~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~ 174 (1405)
T KOG3630|consen 95 FKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVD 174 (1405)
T ss_pred eeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhh
Confidence 333444456666667777654443 344578999998654322111 0000000000 00112221 2345677
Q ss_pred eCCCcEEEEEccCceE-EEEeccCCccEEEEEEcCCCCcEEEEeCCCeEEE
Q 017314 322 SADGSVYIWSISKADI-VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV 371 (373)
Q Consensus 322 s~Dg~i~iwd~~~~~~-~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~i~i 371 (373)
..|+.|++..+..... +..+ .-...+++++|||.|+.++.|...|++.=
T Consensus 175 l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQ 224 (1405)
T KOG3630|consen 175 LSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQ 224 (1405)
T ss_pred ccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEE
Confidence 8899999987754332 2222 23456899999999999999999998753
No 426
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.38 E-value=0.15 Score=50.25 Aligned_cols=147 Identities=19% Similarity=0.291 Sum_probs=84.7
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEE-----------EcCCCCEEEEEeCCCcEEEEEcC--
Q 017314 94 ILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLA-----------ITHDNRSVIAASSSNNLYVWDVN-- 160 (373)
Q Consensus 94 ~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~s~s~d~~i~iwd~~-- 160 (373)
.-|-++..++..+-.+++|++...++... ..+.+|...+++++ ++|||..+++++.||.++.|.+-
T Consensus 189 cp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~ 267 (1283)
T KOG1916|consen 189 CPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYIT 267 (1283)
T ss_pred cccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeee
Confidence 34455666777777889999877655432 44556776655544 58999999999999998888652
Q ss_pred ---CCeeEEEeecCCC-c-EEEEEEeeCC--------CCEEEEE-eCCCcEEEEEccCCeeeeEEeecCceeEEEEccCC
Q 017314 161 ---SGRVRHTLTGHTD-K-VCAVDVSKIS--------SRHVVSA-AYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDG 226 (373)
Q Consensus 161 ---~~~~~~~~~~h~~-~-v~~~~~~~~~--------~~~~~s~-s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g 226 (373)
.-.+++..+.|.+ + |+.+ ++... -.+++++ ...+.+++|....-+|+-.+ ....+..++ -++|
T Consensus 268 g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~-~~d~v~iV~-p~~~ 344 (1283)
T KOG1916|consen 268 GKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDK-LIDGVQIVG-PHDG 344 (1283)
T ss_pred ccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhhhhh-cccceEeec-CCCc
Confidence 2234445555652 2 3322 22110 1133444 45677899987665554111 112233333 2233
Q ss_pred C------------EEEEEeCCCcEEEEECC
Q 017314 227 Q------------TIFSGHIDGNLRLWDIQ 244 (373)
Q Consensus 227 ~------------~l~sg~~dg~i~iwd~~ 244 (373)
. .+++-+-|++|.+|-=+
T Consensus 345 ~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 345 EVTDLSMCQWMTTRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred cccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence 2 13345667888888543
No 427
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.34 E-value=2.6 Score=38.94 Aligned_cols=83 Identities=20% Similarity=0.261 Sum_probs=57.0
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEee-CCCC-----------------EEEEEe
Q 017314 131 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSK-ISSR-----------------HVVSAA 192 (373)
Q Consensus 131 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~-----------------~~~s~s 192 (373)
-.+.++..+|++++.++...-|-|.++|+.++..++..+|-.+.-+..-... ...+ +++-+-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 3577899999988887777778999999999988888887766533211111 1110 233456
Q ss_pred CCCcEEEEEccCCeeeeEEee
Q 017314 193 YDRTLKVWDLHKGYCVNTIIF 213 (373)
Q Consensus 193 ~D~~i~vwd~~~~~~~~~~~~ 213 (373)
.-|.|.||.++.|..+..+..
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred cCCeEEEEecCCCCEEEEEEe
Confidence 678889999988877665543
No 428
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.22 E-value=9.5 Score=35.27 Aligned_cols=189 Identities=19% Similarity=0.231 Sum_probs=88.4
Q ss_pred CCCEEEEee-CCCcEEEEeCCCC----ceeeeccc-------cccceEEEEEcCCCCEEEEEeCC------CcEEEEEcC
Q 017314 99 NSARLISGG-QDKSIKLWDTNTG----SLSSTLYG-------CLGSVLDLAITHDNRSVIAASSS------NNLYVWDVN 160 (373)
Q Consensus 99 ~~~~l~s~s-~D~~v~iwd~~~~----~~~~~~~~-------~~~~v~~~~~~~~~~~l~s~s~d------~~i~iwd~~ 160 (373)
+-++|+..+ ..+.|.|.|+.+. ++.+++.. .....+.+..-|+|+.++++=.| +-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345777777 6788999999854 23333321 11223345556888888875332 357788877
Q ss_pred CCeeEEEeecCCC---cEEEEEEeeCCCCEEEEEeC--------------------CCcEEEEEccCCeeeeEEeecCc-
Q 017314 161 SGRVRHTLTGHTD---KVCAVDVSKISSRHVVSAAY--------------------DRTLKVWDLHKGYCVNTIIFHSN- 216 (373)
Q Consensus 161 ~~~~~~~~~~h~~---~v~~~~~~~~~~~~~~s~s~--------------------D~~i~vwd~~~~~~~~~~~~~~~- 216 (373)
+.+.......... .-..+-+.| ..+.++|.++ -.++.+||+.+.+.++++.....
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp T--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred cccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 7666655543222 123444444 4566776544 46799999999999998876542
Q ss_pred --eeEEEEc--cCCCEEEEEe-CCCcE-EEEECCCCee----eEEEecc--------c--------ccceEEEEEcCCCC
Q 017314 217 --CNALAFS--MDGQTIFSGH-IDGNL-RLWDIQTGKL----LSEVAAH--------S--------LAAVTSISLSRSGN 270 (373)
Q Consensus 217 --~~~~~~~--~~g~~l~sg~-~dg~i-~iwd~~~~~~----~~~~~~~--------~--------~~~v~~~~~~~~~~ 270 (373)
...+.|. |+..+-++|+ -.++| ++|....++- +..+... . ..-|+.|.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 3455554 4455544433 33344 3333333321 1122111 0 13478999999999
Q ss_pred EEEEee-CCCeEEEEEccc
Q 017314 271 IILTSG-RDNLHNLFDIRS 288 (373)
Q Consensus 271 ~l~s~~-~d~~i~~~d~~~ 288 (373)
+|..+. -.+.++.||+..
T Consensus 325 fLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EEEEEETTTTEEEEEE-SS
T ss_pred EEEEEcccCCcEEEEecCC
Confidence 887665 589999999864
No 429
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.21 E-value=0.56 Score=26.91 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=21.4
Q ss_pred eccCCccEEEEEEcCCCCcEEEEeC-C--CeEEEc
Q 017314 341 LKEHTAPVLSCSWSGLGKPLASADK-N--GVVCVW 372 (373)
Q Consensus 341 l~~h~~~V~~~~~s~~g~~l~s~s~-d--g~i~iW 372 (373)
+....+.-....|||||++|+.++. + |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3344556778999999998877655 4 666666
No 430
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.20 E-value=7.5 Score=34.03 Aligned_cols=221 Identities=13% Similarity=0.159 Sum_probs=123.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcC------CC-eeEEEeec-----CCCcEEEEEEeeCC-----------CCEEE
Q 017314 133 VLDLAITHDNRSVIAASSSNNLYVWDVN------SG-RVRHTLTG-----HTDKVCAVDVSKIS-----------SRHVV 189 (373)
Q Consensus 133 v~~~~~~~~~~~l~s~s~d~~i~iwd~~------~~-~~~~~~~~-----h~~~v~~~~~~~~~-----------~~~~~ 189 (373)
-+.++++|.+...++...-+...+||.. .. .++-++.. -....+.+.|+... ...++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4568999999888888888899999986 11 22334332 12234555555321 12367
Q ss_pred EEeCCCcEEEEEccCCee---eeEEeec-C---c-eeEEEEcc--CCCEEEEEe-CCCcEEEEECCCCeeeE--EEecc-
Q 017314 190 SAAYDRTLKVWDLHKGYC---VNTIIFH-S---N-CNALAFSM--DGQTIFSGH-IDGNLRLWDIQTGKLLS--EVAAH- 255 (373)
Q Consensus 190 s~s~D~~i~vwd~~~~~~---~~~~~~~-~---~-~~~~~~~~--~g~~l~sg~-~dg~i~iwd~~~~~~~~--~~~~~- 255 (373)
.++.||+|.=|...-+.. ...+... + . ...+++.. .+.+|+.+. ..++|.++|-.-.+... .+...
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 889999999998533322 1111111 1 1 23455543 466776654 57899999864322110 00000
Q ss_pred --------------cccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeE----E-CCCCc
Q 017314 256 --------------SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC----I-SPDES 316 (373)
Q Consensus 256 --------------~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~----~-s~~~~ 316 (373)
..--|+=..-+++.+.=+.+.--+.|.+||..- ..++.+ .+......+|.... | ...|.
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~-as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRV-ASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEe-ccCCcccCCceeeeChhhhCCCCCC
Confidence 000111111122332223333445788888653 233333 34445556665322 1 24677
Q ss_pred EEEEEeCCCcEEEEEccCceEEEEeccCCc------cEEEEEEcC
Q 017314 317 YVAAGSADGSVYIWSISKADIVRTLKEHTA------PVLSCSWSG 355 (373)
Q Consensus 317 ~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~------~V~~~~~s~ 355 (373)
+|+---.||+|..+|..+++.+..|....+ ..+.++|..
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 787767799999999999998888876443 358888865
No 431
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.96 E-value=15 Score=36.91 Aligned_cols=97 Identities=13% Similarity=0.019 Sum_probs=53.3
Q ss_pred ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEE
Q 017314 87 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH 166 (373)
Q Consensus 87 h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 166 (373)
-.-.|..+.++++|..|+-.|..+.+.+.=.........+.+....+.| +.+.+... .
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~C-------------------rt~~v~~~--~- 140 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINC-------------------RTVPVDER--F- 140 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeE-------------------EEEEechh--h-
Confidence 3457889999999999999998665544321111001112221222222 22222110 0
Q ss_pred EeecCCCcEEEEEEeeCC--CCEEEEEeCCCcEEEEEccCC
Q 017314 167 TLTGHTDKVCAVDVSKIS--SRHVVSAAYDRTLKVWDLHKG 205 (373)
Q Consensus 167 ~~~~h~~~v~~~~~~~~~--~~~~~s~s~D~~i~vwd~~~~ 205 (373)
....+...|..+.|+|.. +.+++.-..|+++|+||+...
T Consensus 141 ~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 141 FTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 011234556677788753 567777788888888888643
No 432
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.92 E-value=6.4 Score=32.60 Aligned_cols=145 Identities=15% Similarity=0.151 Sum_probs=75.5
Q ss_pred CEEEEEeCCCcEEEEEccC--CeeeeEEeecCceeEEEEccCCCEEEEEeCC------CcEEEE-ECCCC----eeeE-E
Q 017314 186 RHVVSAAYDRTLKVWDLHK--GYCVNTIIFHSNCNALAFSMDGQTIFSGHID------GNLRLW-DIQTG----KLLS-E 251 (373)
Q Consensus 186 ~~~~s~s~D~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~d------g~i~iw-d~~~~----~~~~-~ 251 (373)
+.++.+.....|.+|++.. .....++..-+.+..+.++..|++|+|=-.+ ..+|+| +++.. +.+. .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 3444435567799999983 3445556555778999999999999974321 256665 22211 1111 1
Q ss_pred Eec--------------------ccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccce-eeee-----eecCCeeecC
Q 017314 252 VAA--------------------HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV-CGSL-----RATGNRVASN 305 (373)
Q Consensus 252 ~~~--------------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~-~~~~-----~~~~~~~~~~ 305 (373)
+.+ .....+.+++..|-..-|+.|+ ++.+.+|.+..... ...+ ....-.+...
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 111 1123456677766444444443 44677887764322 1111 1111111122
Q ss_pred eeeeEECCCCcEEEEEeCCCcEEEEEc
Q 017314 306 WSRSCISPDESYVAAGSADGSVYIWSI 332 (373)
Q Consensus 306 ~~~~~~s~~~~~l~sgs~Dg~i~iwd~ 332 (373)
+....++-.+.|+|..+.. .+++..+
T Consensus 188 ~~p~~v~ic~~yiA~~s~~-ev~Vlkl 213 (215)
T PF14761_consen 188 FKPTQVAICEGYIAVMSDL-EVLVLKL 213 (215)
T ss_pred ceEEEEEEEeeEEEEecCC-EEEEEEE
Confidence 2222333457788777654 4666544
No 433
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.75 E-value=12 Score=35.28 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=36.0
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEECCCCee--eEEE----ecccccceEEEEEcCCC
Q 017314 216 NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL--LSEV----AAHSLAAVTSISLSRSG 269 (373)
Q Consensus 216 ~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~--~~~~----~~~~~~~v~~~~~~~~~ 269 (373)
....++|.|||+.|++--..|.|++++..++.. +..+ ..........|+++|+-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 357899999998777655569999998655432 1111 11123567899999874
No 434
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.47 E-value=15 Score=36.14 Aligned_cols=169 Identities=15% Similarity=0.250 Sum_probs=79.0
Q ss_pred CcEEEEEccCCeeeeEEe-ecCceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEe---cccccceEEEEEcCCCC
Q 017314 195 RTLKVWDLHKGYCVNTII-FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA---AHSLAAVTSISLSRSGN 270 (373)
Q Consensus 195 ~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~ 270 (373)
-.|+|+++. |+.+.... .+..+..+.|+.+. .|++-..||++++|++-... +.... ......|..+.+..+|-
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhh-hcccccccccccCceeEEEEecCce
Confidence 357777763 44443332 23467788888655 56677899999999985322 22211 11112345555554554
Q ss_pred EEEEeeCCCeEEEEEccccceeeeeee-cCCeee-cCeeeeEECCCCc-EE--EEEeCCCcEEEEEccCce-EEEEeccC
Q 017314 271 IILTSGRDNLHNLFDIRSLEVCGSLRA-TGNRVA-SNWSRSCISPDES-YV--AAGSADGSVYIWSISKAD-IVRTLKEH 344 (373)
Q Consensus 271 ~l~s~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~-~~~~~~~~s~~~~-~l--~sgs~Dg~i~iwd~~~~~-~~~~l~~h 344 (373)
.+.+. .+..+.+.+..... ..+++. +..... ..|. ++.|.-. ++ ...-..|. .+.-+.... ....+...
T Consensus 141 avlt~-~g~v~~i~~~~~~~-~~~~~diP~~~~~~~~Wt--~~~~~~~~~~ll~v~~~v~~-~~~q~~~~~~q~~~~~~~ 215 (829)
T KOG2280|consen 141 AVLTV-SGQVILINGVEEPK-LRKMPDIPYNELPKSCWT--VFQPHRQSTILLDVDVAVGL-HICQVEESRVQLHALSWP 215 (829)
T ss_pred EEEec-CCcEEEEcCCCcch-hhhCCCCCCccCCCccee--EecCCCcceeEEeechhhhh-cccceecccccccccCCC
Confidence 33333 23333333332211 111111 111111 1222 2333221 11 11111110 111111111 11222223
Q ss_pred CccEEEEEEcCCCCcEEEEeCCCeEEE
Q 017314 345 TAPVLSCSWSGLGKPLASADKNGVVCV 371 (373)
Q Consensus 345 ~~~V~~~~~s~~g~~l~s~s~dg~i~i 371 (373)
.+.+..+..||++++||--..+|.|.+
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~ 242 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWV 242 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEE
Confidence 456889999999999999888888765
No 435
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.25 E-value=9 Score=33.02 Aligned_cols=186 Identities=15% Similarity=0.102 Sum_probs=107.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEe
Q 017314 133 VLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII 212 (373)
Q Consensus 133 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~ 212 (373)
-..++-.+||..-+++...+.|---|..+|+....--+....-..+.+.|....++.-.+. -|.-.|-++... ..+.
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~--aI~R~dpkt~ev-t~f~ 140 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL--AIGRLDPKTLEV-TRFP 140 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc--eeEEecCcccce-EEee
Confidence 3467888999988999888888888998888765544443333444444433333322221 233333333221 1222
Q ss_pred e-----cCceeEEEEccCCCEEEEEeC---------CCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCC
Q 017314 213 F-----HSNCNALAFSMDGQTIFSGHI---------DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 278 (373)
Q Consensus 213 ~-----~~~~~~~~~~~~g~~l~sg~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 278 (373)
. ..+.+...|.+.|.+-+++.. .+.|++|+... ...-+.|+..|+|..-++.-.+
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-----------G~gpyGi~atpdGsvwyaslag 209 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ-----------GGGPYGICATPDGSVWYASLAG 209 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC-----------CCCCcceEECCCCcEEEEeccc
Confidence 1 134677889999998888753 23445554432 2455678888999988888788
Q ss_pred CeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccC
Q 017314 279 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK 334 (373)
Q Consensus 279 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~ 334 (373)
+.|-..|...+. ...+..... ....-..+..+|.|..-+|-...+.+..+|...
T Consensus 210 naiaridp~~~~-aev~p~P~~-~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 210 NAIARIDPFAGH-AEVVPQPNA-LKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred cceEEcccccCC-cceecCCCc-ccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 877777755431 111111111 011111223467777777766677777777654
No 436
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.13 E-value=0.96 Score=26.67 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=25.1
Q ss_pred cceEEEEEcCCCC---EEEEEeCCCcEEEEEcCC
Q 017314 131 GSVLDLAITHDNR---SVIAASSSNNLYVWDVNS 161 (373)
Q Consensus 131 ~~v~~~~~~~~~~---~l~s~s~d~~i~iwd~~~ 161 (373)
+.|.++.|+|++. +|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3578899998655 777777888999999985
No 437
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.07 E-value=10 Score=33.28 Aligned_cols=208 Identities=15% Similarity=0.177 Sum_probs=116.9
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEeCCC------C-ceeeeccc-----cccceEEEEEcCC--------C----CEE
Q 017314 90 GCASILFEYNSARLISGGQDKSIKLWDTNT------G-SLSSTLYG-----CLGSVLDLAITHD--------N----RSV 145 (373)
Q Consensus 90 ~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~------~-~~~~~~~~-----~~~~v~~~~~~~~--------~----~~l 145 (373)
.-+.|+|+|.+..-++...-++..+||.+. . .++-++.. .....+.+.|+.- + ..+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 357899999999888888889999999861 1 22222221 1123444544422 1 236
Q ss_pred EEEeCCCcEEEEEcCCCee-----EEEee-cCCCcE-EEEEEeeC-CCCEEEEEe-CCCcEEEEEccCCeee--eEEeec
Q 017314 146 IAASSSNNLYVWDVNSGRV-----RHTLT-GHTDKV-CAVDVSKI-SSRHVVSAA-YDRTLKVWDLHKGYCV--NTIIFH 214 (373)
Q Consensus 146 ~s~s~d~~i~iwd~~~~~~-----~~~~~-~h~~~v-~~~~~~~~-~~~~~~s~s-~D~~i~vwd~~~~~~~--~~~~~~ 214 (373)
+.++.||+|.-|...-+.. ...+. +-...| ..+++... ..++|..+. ..++|.|+|-.-.+.. ..+..+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 8899999999998633221 11221 112344 34444422 234555443 5789999985422110 000000
Q ss_pred --------Cce------eEEEE---ccCCCEEEEEeCCCcEEEEECCCCeeeEEEecc-cccceEEEEEcC------CCC
Q 017314 215 --------SNC------NALAF---SMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH-SLAAVTSISLSR------SGN 270 (373)
Q Consensus 215 --------~~~------~~~~~---~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~------~~~ 270 (373)
-.+ .-+.| .+++..=+.|-.-|.|-+||+. |+.++.+... .......|+..| .+.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 000 01111 2233333344455789999985 5666666322 122344555544 567
Q ss_pred EEEEeeCCCeEEEEEccccceeeeeeec
Q 017314 271 IILTSGRDNLHNLFDIRSLEVCGSLRAT 298 (373)
Q Consensus 271 ~l~s~~~d~~i~~~d~~~~~~~~~~~~~ 298 (373)
+|+..--|++|..||..+++.++.+...
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~~~ 290 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLLDP 290 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeecCC
Confidence 7887777999999999988877777543
No 438
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=90.83 E-value=8.6 Score=32.80 Aligned_cols=144 Identities=17% Similarity=0.235 Sum_probs=77.9
Q ss_pred EEEEccCCeeeeEEeecCc--eeEEEEccCCCEEEEEeC-C--CcEEEEECCC---CeeeEEEe--cccccceEEEEEcC
Q 017314 198 KVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHI-D--GNLRLWDIQT---GKLLSEVA--AHSLAAVTSISLSR 267 (373)
Q Consensus 198 ~vwd~~~~~~~~~~~~~~~--~~~~~~~~~g~~l~sg~~-d--g~i~iwd~~~---~~~~~~~~--~~~~~~v~~~~~~~ 267 (373)
.+||+.++... .+....+ |.+-++-|||++|.+|+. | ..+|+++... .....+.. ....-.-.+...-+
T Consensus 49 ~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 46888776432 2222222 455567899999998775 3 3488888644 11111100 01112233445568
Q ss_pred CCCEEEEeeCCC-eEEEEEcccc-ceeeee---eecCCee-ecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEe
Q 017314 268 SGNIILTSGRDN-LHNLFDIRSL-EVCGSL---RATGNRV-ASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL 341 (373)
Q Consensus 268 ~~~~l~s~~~d~-~i~~~d~~~~-~~~~~~---~~~~~~~-~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l 341 (373)
||+.|+.||.+. ...+|+-... .....+ ....... ..-+-.+.+-|+|++|+.+..++ .|||..+.+.++.+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence 999999988874 3445554211 111111 0000000 11112345679999999888765 56799888777776
Q ss_pred ccC
Q 017314 342 KEH 344 (373)
Q Consensus 342 ~~h 344 (373)
..-
T Consensus 206 P~l 208 (243)
T PF07250_consen 206 PDL 208 (243)
T ss_pred CCC
Confidence 543
No 439
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=90.61 E-value=15 Score=35.26 Aligned_cols=150 Identities=11% Similarity=0.181 Sum_probs=81.7
Q ss_pred cccccceEEEEEcCCCCEEE-EEe--CCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCC---CCEEEEEeCCCcEEEE
Q 017314 127 YGCLGSVLDLAITHDNRSVI-AAS--SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKIS---SRHVVSAAYDRTLKVW 200 (373)
Q Consensus 127 ~~~~~~v~~~~~~~~~~~l~-s~s--~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~~~s~s~D~~i~vw 200 (373)
....-+++.++|. ||+.++ +.- .+|.++.=| .+.+ |.-.-|.++.|.|.. ...+++-...+.|.||
T Consensus 16 ~qAiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVW 87 (671)
T PF15390_consen 16 HQAIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVW 87 (671)
T ss_pred HhhhccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEE
Confidence 3334577888886 555443 321 122222211 1222 334457888888752 3356667788899999
Q ss_pred Ecc-----CCeeeeEEe--ecCc----eeEEEEccCCCEEEEEeCCCcEEEEECCCC--eeeEEEecccccceEEEEEcC
Q 017314 201 DLH-----KGYCVNTII--FHSN----CNALAFSMDGQTIFSGHIDGNLRLWDIQTG--KLLSEVAAHSLAAVTSISLSR 267 (373)
Q Consensus 201 d~~-----~~~~~~~~~--~~~~----~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~ 267 (373)
.+. +++.+.... .... .-.+.|+|....|+.=.....=-+++++.. +....+. ..+.|.|-+|.+
T Consensus 88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~--~~G~IhCACWT~ 165 (671)
T PF15390_consen 88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK--TSGLIHCACWTK 165 (671)
T ss_pred EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc--CCceEEEEEecC
Confidence 875 222221111 1111 234668998877765333333234555432 2222332 337899999999
Q ss_pred CCCEEEEe-eCCCeEEEEEc
Q 017314 268 SGNIILTS-GRDNLHNLFDI 286 (373)
Q Consensus 268 ~~~~l~s~-~~d~~i~~~d~ 286 (373)
||+.|+.+ |..---.+||-
T Consensus 166 DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred cCCEEEEEeCCeEEEEEecC
Confidence 99977665 33334567874
No 440
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=90.45 E-value=16 Score=35.14 Aligned_cols=145 Identities=13% Similarity=0.160 Sum_probs=77.8
Q ss_pred CcEEEEEEcCCCCEE-EEee--CCCcEEEEeCCCCceeeeccccccceEEEEEcCCC----CEEEEEeCCCcEEEEEcC-
Q 017314 89 GGCASILFEYNSARL-ISGG--QDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDN----RSVIAASSSNNLYVWDVN- 160 (373)
Q Consensus 89 ~~v~~~~~~~~~~~l-~s~s--~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~s~s~d~~i~iwd~~- 160 (373)
.++..++|. ||+.+ +|.= ..|.++.=|- ..+ |.-..|..+.|.|-+ ..|++....+.|.||-+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 467788887 45443 3322 1222222111 112 333457888888763 368888889999999875
Q ss_pred ----CCeeEEEeecCCC---cE--EEEEEeeCCCCEEE-EEeCCCcEEEEEccCC--eeeeEEeecCceeEEEEccCCCE
Q 017314 161 ----SGRVRHTLTGHTD---KV--CAVDVSKISSRHVV-SAAYDRTLKVWDLHKG--YCVNTIIFHSNCNALAFSMDGQT 228 (373)
Q Consensus 161 ----~~~~~~~~~~h~~---~v--~~~~~~~~~~~~~~-s~s~D~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~g~~ 228 (373)
.++.+..-..+-. +| .++.|+|. ...++ -...|-+ .+.+++.. +....+.....+-|.+|.+||+.
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk-~~iL~VLT~~dvS-V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPK-KAILTVLTARDVS-VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQR 169 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCC-CceEEEEecCcee-EeeeeeeCCceEEEeccCCceEEEEEecCcCCE
Confidence 2333322222211 11 23457774 33333 2333322 23444322 22333444556889999999999
Q ss_pred EEEEe-CCCcEEEEEC
Q 017314 229 IFSGH-IDGNLRLWDI 243 (373)
Q Consensus 229 l~sg~-~dg~i~iwd~ 243 (373)
|+.+- ..=.-++||-
T Consensus 170 LVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWDS 185 (671)
T ss_pred EEEEeCCeEEEEEecC
Confidence 87643 3334568874
No 441
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.79 E-value=2.1 Score=41.58 Aligned_cols=71 Identities=23% Similarity=0.372 Sum_probs=45.1
Q ss_pred CCCCEEEEeeCCCcEEEEeCCC----Ccee-ee----------ccc-----------cccceEEEEEcC----CCCEEEE
Q 017314 98 YNSARLISGGQDKSIKLWDTNT----GSLS-ST----------LYG-----------CLGSVLDLAITH----DNRSVIA 147 (373)
Q Consensus 98 ~~~~~l~s~s~D~~v~iwd~~~----~~~~-~~----------~~~-----------~~~~v~~~~~~~----~~~~l~s 147 (373)
.++..++.+..||.+....... +... .. +.+ ..+.+.++++.. +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3677888888999988877654 1111 11 111 123455566666 7789999
Q ss_pred EeCCCcEEEEEcCCCeeEEEe
Q 017314 148 ASSSNNLYVWDVNSGRVRHTL 168 (373)
Q Consensus 148 ~s~d~~i~iwd~~~~~~~~~~ 168 (373)
.+.|+++|+||+.+++++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999986654
No 442
>PRK10115 protease 2; Provisional
Probab=89.47 E-value=25 Score=35.32 Aligned_cols=110 Identities=11% Similarity=-0.002 Sum_probs=60.9
Q ss_pred ceEEEEEcCCCCEEEEEeC-C----CcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCC-----CcEEEEE
Q 017314 132 SVLDLAITHDNRSVIAASS-S----NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD-----RTLKVWD 201 (373)
Q Consensus 132 ~v~~~~~~~~~~~l~s~s~-d----~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D-----~~i~vwd 201 (373)
.+..+.++||+++|+.+.. + .++++.|+.++..+........ ..+.|.+....++++.-.+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4556788999998765432 2 3588999988863322211111 4577877444444544322 3577778
Q ss_pred ccCCee--eeEEeecCc-ee-EEEEccCCCEEEEEe---CCCcEEEEEC
Q 017314 202 LHKGYC--VNTIIFHSN-CN-ALAFSMDGQTIFSGH---IDGNLRLWDI 243 (373)
Q Consensus 202 ~~~~~~--~~~~~~~~~-~~-~~~~~~~g~~l~sg~---~dg~i~iwd~ 243 (373)
+.++.. ...+..... .. ....+.++.+++..+ .++.+.+++.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 877632 112221111 22 233344888766433 3457888885
No 443
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.26 E-value=11 Score=35.46 Aligned_cols=145 Identities=14% Similarity=0.171 Sum_probs=84.3
Q ss_pred EEcCCCCEEE-EeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCC-------EEEEEeCCCcEEEEEcCC-CeeE
Q 017314 95 LFEYNSARLI-SGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR-------SVIAASSSNNLYVWDVNS-GRVR 165 (373)
Q Consensus 95 ~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~s~s~d~~i~iwd~~~-~~~~ 165 (373)
....|.++|+ .|+.-..+.--|++-|+.+....-|...| +.|.|+.. .-+.|-.+..|.-.|++- |..+
T Consensus 474 lh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi 551 (776)
T COG5167 474 LHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI 551 (776)
T ss_pred eecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeecccceEEecccccCCce
Confidence 3445555554 45566778888899999888887766553 56666532 123444555555556643 2111
Q ss_pred EEeecCCCcEEEEEEe---eCCCCEEEEEeCCCcEEEEEccCCeeeeEE-e-ecCceeEEEEccCCCEEEEEeCCCcEEE
Q 017314 166 HTLTGHTDKVCAVDVS---KISSRHVVSAAYDRTLKVWDLHKGYCVNTI-I-FHSNCNALAFSMDGQTIFSGHIDGNLRL 240 (373)
Q Consensus 166 ~~~~~h~~~v~~~~~~---~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~-~-~~~~~~~~~~~~~g~~l~sg~~dg~i~i 240 (373)
... ...+.++.-.|+ ...+.+++.+|..|.||+||--..+ .++. + ....+..+..+.+|.++++.+. ..+-+
T Consensus 552 ~v~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r-AKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL 628 (776)
T COG5167 552 KVV-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR-AKTALPGLGDAIKHIDVTANGKHILATCK-NYLLL 628 (776)
T ss_pred eee-eehhccccccccccccccCceEEEecCCCceeeehhhcch-hhhcCcccccceeeeEeecCCcEEEEeec-ceEEE
Confidence 111 111222111121 2356799999999999999953222 2222 1 2344677888899998876654 46777
Q ss_pred EECC
Q 017314 241 WDIQ 244 (373)
Q Consensus 241 wd~~ 244 (373)
-|++
T Consensus 629 ~d~~ 632 (776)
T COG5167 629 TDVP 632 (776)
T ss_pred Eecc
Confidence 7764
No 444
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.21 E-value=0.13 Score=50.67 Aligned_cols=62 Identities=23% Similarity=0.326 Sum_probs=47.1
Q ss_pred ECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEE-----------EcCCCCcEEEEeCCCeEEEcC
Q 017314 311 ISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCS-----------WSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 311 ~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~-----------~s~~g~~l~s~s~dg~i~iW~ 373 (373)
|-+...|++.+-.++.|++..+..... ..+.+|...++.++ .||||..+|.+..||.+++|+
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 445668888898999999887765433 34556766555543 599999999999999999985
No 445
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.33 E-value=20 Score=32.78 Aligned_cols=195 Identities=17% Similarity=0.293 Sum_probs=112.9
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEE----cCCCCE--EEEEeC-C---CcEEEEEcC--CCeeE
Q 017314 98 YNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAI----THDNRS--VIAASS-S---NNLYVWDVN--SGRVR 165 (373)
Q Consensus 98 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~----~~~~~~--l~s~s~-d---~~i~iwd~~--~~~~~ 165 (373)
|..++++...+++-+.+||+. |+.+..+. .+.+..+.+ .-+|+. |+.++. + .+|++|.+. ++.+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 455688888899999999986 44555443 233333332 223443 444443 2 479999765 44332
Q ss_pred EEeec-------CCCcEEEEEEee--CCC-CEEEEEeCCCcEEEEEcc---CC----eeeeEEeecCceeEEEEccCCCE
Q 017314 166 HTLTG-------HTDKVCAVDVSK--ISS-RHVVSAAYDRTLKVWDLH---KG----YCVNTIIFHSNCNALAFSMDGQT 228 (373)
Q Consensus 166 ~~~~~-------h~~~v~~~~~~~--~~~-~~~~s~s~D~~i~vwd~~---~~----~~~~~~~~~~~~~~~~~~~~g~~ 228 (373)
.+.. -...++.+++.. ..+ -+++....+|.+..|-+. .+ ..++++...+.+..+........
T Consensus 143 -~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 143 -DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGR 221 (381)
T ss_dssp -E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTE
T ss_pred -EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCC
Confidence 2221 123467777643 223 356678889988887764 23 46778888888899999988889
Q ss_pred EEEEeCCCcEEEEECCC-----CeeeEEEec-ccccceEEEEE--cCCC--CEEEEeeCCCeEEEEEccc-cceeeeee
Q 017314 229 IFSGHIDGNLRLWDIQT-----GKLLSEVAA-HSLAAVTSISL--SRSG--NIILTSGRDNLHNLFDIRS-LEVCGSLR 296 (373)
Q Consensus 229 l~sg~~dg~i~iwd~~~-----~~~~~~~~~-~~~~~v~~~~~--~~~~--~~l~s~~~d~~i~~~d~~~-~~~~~~~~ 296 (373)
|+.|-.|.-|.-|+... ++.+....+ +-...+-.|++ .+++ .+|+|.-.++...+||... ....+.|.
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~ 300 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFR 300 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEE
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceEE
Confidence 99999998888888752 222222222 12234555555 3333 3555666678999999764 44455554
No 446
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.11 E-value=19 Score=32.31 Aligned_cols=31 Identities=10% Similarity=0.245 Sum_probs=24.1
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCc------EEEEeCC
Q 017314 88 EGGCASILFEYNSARLISGGQDKS------IKLWDTN 118 (373)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~s~D~~------v~iwd~~ 118 (373)
-++.+.+.+.+++..+++-|.++. +...++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~ 55 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRID 55 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEee
Confidence 367899999987888888898888 5555544
No 447
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.01 E-value=14 Score=34.33 Aligned_cols=111 Identities=11% Similarity=0.094 Sum_probs=64.4
Q ss_pred eeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEEeCCCcE
Q 017314 248 LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSV 327 (373)
Q Consensus 248 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i 327 (373)
.+..+.....++|.++.|++|++.|+..-.|..+.+++....+....+...-..-...+...+++ +..-+|--+..| +
T Consensus 57 VpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~-~s~e~A~i~~~G-~ 134 (657)
T KOG2377|consen 57 VPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWT-SSTEIAFITDQG-I 134 (657)
T ss_pred CCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEe-cCeeEEEEecCC-e
Confidence 34445445557999999999999999999999999988733221111110000000001112232 335555555555 6
Q ss_pred EEEEccCc-eEEEEeccCCccEEEEEEcCCCCcE
Q 017314 328 YIWSISKA-DIVRTLKEHTAPVLSCSWSGLGKPL 360 (373)
Q Consensus 328 ~iwd~~~~-~~~~~l~~h~~~V~~~~~s~~g~~l 360 (373)
-+|-+... ..++..+.|.-.|+=..|.|+.+.+
T Consensus 135 e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 135 EFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVI 168 (657)
T ss_pred EEEEEchhhhhhhhhhhcccCccEEEEccccceE
Confidence 66655443 2344556677778888888887744
No 448
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.96 E-value=29 Score=34.57 Aligned_cols=103 Identities=6% Similarity=0.029 Sum_probs=64.9
Q ss_pred CCCEEEEEeCCCcEEEEEccC-------C-------------eeeeEEeecCceeEEEEc--cCCCEEEEEeCCCcEEEE
Q 017314 184 SSRHVVSAAYDRTLKVWDLHK-------G-------------YCVNTIIFHSNCNALAFS--MDGQTIFSGHIDGNLRLW 241 (373)
Q Consensus 184 ~~~~~~s~s~D~~i~vwd~~~-------~-------------~~~~~~~~~~~~~~~~~~--~~g~~l~sg~~dg~i~iw 241 (373)
....|+.|..||.|.+|.++. . .+.-.+..+..+..++++ ...++||+++....|.+|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 455677888899999996521 0 011122233456788888 778888888888888888
Q ss_pred ECCCC--eeeEEEecccccceEEEEEcCCC-----C-EEEEeeCCCeEEEEEc
Q 017314 242 DIQTG--KLLSEVAAHSLAAVTSISLSRSG-----N-IILTSGRDNLHNLFDI 286 (373)
Q Consensus 242 d~~~~--~~~~~~~~~~~~~v~~~~~~~~~-----~-~l~s~~~d~~i~~~d~ 286 (373)
-.... +....-.......|.+|+|-++. . .+++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 65431 11111011122467788886543 2 7788889999888877
No 449
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=87.76 E-value=17 Score=31.29 Aligned_cols=156 Identities=17% Similarity=0.111 Sum_probs=78.2
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEEEeCCCcEEEEE-CCCCeee-EE
Q 017314 174 KVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWD-IQTGKLL-SE 251 (373)
Q Consensus 174 ~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg~~dg~i~iwd-~~~~~~~-~~ 251 (373)
.+...++++......+....++.-.||-...+..............-+|++++...+....+...+++- ...+... ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 456667777443333333233333444333333333332333566678999988777766666667763 3333222 22
Q ss_pred Eeccccc-ceEEEEEcCCCCEEEEee---CCCeEEEEEcccccee--eeee---ecCCeeecCeeeeEECCCCcEEEEEe
Q 017314 252 VAAHSLA-AVTSISLSRSGNIILTSG---RDNLHNLFDIRSLEVC--GSLR---ATGNRVASNWSRSCISPDESYVAAGS 322 (373)
Q Consensus 252 ~~~~~~~-~v~~~~~~~~~~~l~s~~---~d~~i~~~d~~~~~~~--~~~~---~~~~~~~~~~~~~~~s~~~~~l~sgs 322 (373)
+...... .|+++.++|||..++.-. .++.+.+--+.....- ..+. ............+.+.+++.+++.+.
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 2222222 799999999999776554 3455555443211110 0110 00101111223355677887777665
Q ss_pred C-CCcEEE
Q 017314 323 A-DGSVYI 329 (373)
Q Consensus 323 ~-Dg~i~i 329 (373)
. ++.+..
T Consensus 185 ~~~~~~~~ 192 (253)
T PF10647_consen 185 SAGGPVVR 192 (253)
T ss_pred CCCCceeE
Confidence 4 443444
No 450
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=87.70 E-value=21 Score=32.20 Aligned_cols=49 Identities=24% Similarity=0.266 Sum_probs=32.5
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEeCCCCce---eeec----cccccceEEEEEcCC
Q 017314 91 CASILFEYNSARLISGGQDKSIKLWDTNTGSL---SSTL----YGCLGSVLDLAITHD 141 (373)
Q Consensus 91 v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~---~~~~----~~~~~~v~~~~~~~~ 141 (373)
-++|+|.|||..|++ -..|.|++++ ..+.. +..+ .........++++|+
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 367999999877665 6699999999 44433 2111 223456789999995
No 451
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.52 E-value=3.4 Score=23.79 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=23.2
Q ss_pred CCCcEEEE-EeCCCcEEEEEccCceEEEEecc
Q 017314 313 PDESYVAA-GSADGSVYIWSISKADIVRTLKE 343 (373)
Q Consensus 313 ~~~~~l~s-gs~Dg~i~iwd~~~~~~~~~l~~ 343 (373)
|++++|.+ .-.+++|.++|..+++.+..+.-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 56665555 44688999999998888777654
No 452
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=87.31 E-value=20 Score=31.71 Aligned_cols=129 Identities=13% Similarity=0.166 Sum_probs=63.8
Q ss_pred EeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEE
Q 017314 232 GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI 311 (373)
Q Consensus 232 g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (373)
++..|.|.. ....|+.-+.+.......+..+..+++|+++++++..+...-||.-... ...+.......+..+.|
T Consensus 120 ~~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~----w~~~~r~~~~riq~~gf 194 (302)
T PF14870_consen 120 AGDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT----WQPHNRNSSRRIQSMGF 194 (302)
T ss_dssp EETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-----EEEE--SSS-EEEEEE
T ss_pred EcCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc----ceEEccCccceehhcee
Confidence 344454432 2233433333333344678889999999999999888888888754211 11122222233344678
Q ss_pred CCCCcEEEEEeCCCcEEEEE-ccCceEEEE--ec--cCCccEEEEEEcCCCCcEEEEeCC
Q 017314 312 SPDESYVAAGSADGSVYIWS-ISKADIVRT--LK--EHTAPVLSCSWSGLGKPLASADKN 366 (373)
Q Consensus 312 s~~~~~l~sgs~Dg~i~iwd-~~~~~~~~~--l~--~h~~~V~~~~~s~~g~~l~s~s~d 366 (373)
+|++.+.+.+ ..|.|++=+ ....+.-.. .. .-.-.+.+++|.+++...|+|+..
T Consensus 195 ~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 195 SPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp -TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred cCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 9998776654 788888776 222221111 11 112247999999998777766554
No 453
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.20 E-value=11 Score=28.61 Aligned_cols=112 Identities=8% Similarity=0.162 Sum_probs=66.8
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCe--------eEEEeecCCCcEEEEEEeeC---C-CCEEEEEeCCCcEEEEEccC
Q 017314 137 AITHDNRSVIAASSSNNLYVWDVNSGR--------VRHTLTGHTDKVCAVDVSKI---S-SRHVVSAAYDRTLKVWDLHK 204 (373)
Q Consensus 137 ~~~~~~~~l~s~s~d~~i~iwd~~~~~--------~~~~~~~h~~~v~~~~~~~~---~-~~~~~s~s~D~~i~vwd~~~ 204 (373)
.|......|++++..+.|.|.++.... .+..| .-...|++++-.+. . ...|+-| ...++-.||+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEccc
Confidence 344555578888888999999876432 22222 24566777765543 2 3344444 456788999987
Q ss_pred CeeeeEEeecCceeEEEEcc----CCCEEEEEeCCCcEEEEECCCCeeeEE
Q 017314 205 GYCVNTIIFHSNCNALAFSM----DGQTIFSGHIDGNLRLWDIQTGKLLSE 251 (373)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~----~g~~l~sg~~dg~i~iwd~~~~~~~~~ 251 (373)
..-+.....+..++++.+-. +...++.|+ +..|.-||....+...+
T Consensus 83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred CchhhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence 76554444556677766632 234444443 46677777665554443
No 454
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=86.97 E-value=22 Score=31.77 Aligned_cols=106 Identities=13% Similarity=0.114 Sum_probs=49.7
Q ss_pred CCCEEEEeeCC-----CcEEEEeCCCCce---eeeccccccce--EEEEEcCCCCEEEEEeC-----CCcEEEEEcCCCe
Q 017314 99 NSARLISGGQD-----KSIKLWDTNTGSL---SSTLYGCLGSV--LDLAITHDNRSVIAASS-----SNNLYVWDVNSGR 163 (373)
Q Consensus 99 ~~~~l~s~s~D-----~~v~iwd~~~~~~---~~~~~~~~~~v--~~~~~~~~~~~l~s~s~-----d~~i~iwd~~~~~ 163 (373)
++..++.||.+ ..+..+|+.+..- ...+..-..+. .+++ ..++...+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~-~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSAC-YKDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEE-EECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 55666777764 3466677765542 11111111110 1112 234555566654 2458888887654
Q ss_pred eEE--EeecCCCcEEEEEEeeCCCCEEEEEeCCCc----EEEEEccCCee
Q 017314 164 VRH--TLTGHTDKVCAVDVSKISSRHVVSAAYDRT----LKVWDLHKGYC 207 (373)
Q Consensus 164 ~~~--~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~----i~vwd~~~~~~ 207 (373)
=.. .+... ......... ..++..+.|+.++. +..||..+...
T Consensus 151 W~~~~~~p~~-~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVK-LQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eeECCCCCCC-CCCcceEEE-ECCEEEEEcCCCCccccceEEEecCCCee
Confidence 221 11111 111111111 24556677776643 45788876543
No 455
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.60 E-value=4.5 Score=33.47 Aligned_cols=57 Identities=16% Similarity=0.311 Sum_probs=37.6
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEECCCC--eeeEEEecccccceEEEEEcCCCCEEEEee
Q 017314 217 CNALAFSMDGQTIFSGHIDGNLRLWDIQTG--KLLSEVAAHSLAAVTSISLSRSGNIILTSG 276 (373)
Q Consensus 217 ~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 276 (373)
...++..+. ..|+.+...+.|.+|++... +....+. ..+.|..+.++..|++|+|--
T Consensus 20 P~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 20 PTAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred cceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceEEEEE
Confidence 334444432 34444456678999999833 3344443 347899999999999999853
No 456
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=86.26 E-value=24 Score=31.53 Aligned_cols=65 Identities=12% Similarity=0.199 Sum_probs=32.7
Q ss_pred CCCEEEEEeC-----CCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCe----EEEEEcccc
Q 017314 225 DGQTIFSGHI-----DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL----HNLFDIRSL 289 (373)
Q Consensus 225 ~g~~l~sg~~-----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~----i~~~d~~~~ 289 (373)
++...+.|+. ...+..||+.+.+-...-..............-++++.+.||.++. +..||..+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 5555566654 2358888987764322111111011122222335677777776542 357777653
No 457
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.59 E-value=9.5 Score=37.79 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=70.2
Q ss_pred EEEEEEc--CCCCEEEEeeCCCcEEEEeCCC-------C----ce--------eeeccccccceEEEEEc--CCCCEEEE
Q 017314 91 CASILFE--YNSARLISGGQDKSIKLWDTNT-------G----SL--------SSTLYGCLGSVLDLAIT--HDNRSVIA 147 (373)
Q Consensus 91 v~~~~~~--~~~~~l~s~s~D~~v~iwd~~~-------~----~~--------~~~~~~~~~~v~~~~~~--~~~~~l~s 147 (373)
|.-+... -+...|+.|..||.|.+|.+++ . .. .........+++++++. ...+++|.
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV 182 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV 182 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence 4444433 3456889999999999997631 0 00 00011123478889987 66777777
Q ss_pred EeCCCcEEEEEcCC--CeeEEE-eecCCCcEEEEEEeeCC--CC---EEEEEeCCCcEEEEEc
Q 017314 148 ASSSNNLYVWDVNS--GRVRHT-LTGHTDKVCAVDVSKIS--SR---HVVSAAYDRTLKVWDL 202 (373)
Q Consensus 148 ~s~d~~i~iwd~~~--~~~~~~-~~~h~~~v~~~~~~~~~--~~---~~~s~s~D~~i~vwd~ 202 (373)
+++...|.||-... .+.... -..|...|.+|+|-+.. +. .+++++-.|.+.+|++
T Consensus 183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 77778777775433 221110 11256678888887643 22 6788999999998887
No 458
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=84.36 E-value=18 Score=33.83 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=25.3
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q 017314 259 AVTSISLSRSGNIILTSGRDNLHNLFDIRS 288 (373)
Q Consensus 259 ~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~ 288 (373)
.|.++..++..+.+++...++.+.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 488999999999999999999999999974
No 459
>PRK13684 Ycf48-like protein; Provisional
Probab=84.30 E-value=31 Score=31.10 Aligned_cols=151 Identities=15% Similarity=0.151 Sum_probs=77.6
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEE-EECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeee
Q 017314 216 NCNALAFSMDGQTIFSGHIDGNLRL-WDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGS 294 (373)
Q Consensus 216 ~~~~~~~~~~g~~l~sg~~dg~i~i-wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~ 294 (373)
.+..+.+.|++.++++|. .|.+.. +|- .++.-..+.......++++.+.++++.++.+ ..+.+.+-....++.-..
T Consensus 174 ~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSK 250 (334)
T ss_pred eEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccc
Confidence 467788889887665554 455432 221 2222223333344678999999999877665 456554321221111011
Q ss_pred eeecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEec---cCCccEEEEEEcCCCCcEEEEeCCCeEEE
Q 017314 295 LRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLK---EHTAPVLSCSWSGLGKPLASADKNGVVCV 371 (373)
Q Consensus 295 ~~~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~---~h~~~V~~~~~s~~g~~l~s~s~dg~i~i 371 (373)
...+..........+.+.|++..+++| .+|.|. .....++--.... .-....+.+.|-.+++.++ ++..|.|--
T Consensus 251 ~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~ 327 (334)
T PRK13684 251 PIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLR 327 (334)
T ss_pred ccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEE
Confidence 111100000112234567777765544 567554 4444444333332 2223577888876665544 667787765
Q ss_pred c
Q 017314 372 W 372 (373)
Q Consensus 372 W 372 (373)
|
T Consensus 328 ~ 328 (334)
T PRK13684 328 Y 328 (334)
T ss_pred e
Confidence 5
No 460
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=84.10 E-value=36 Score=31.70 Aligned_cols=144 Identities=14% Similarity=0.177 Sum_probs=83.2
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeE--E-Ee-ecCCCcEEEEEEeeC---CCCEEEEEeCCCcEEEEEccCC--e------
Q 017314 142 NRSVIAASSSNNLYVWDVNSGRVR--H-TL-TGHTDKVCAVDVSKI---SSRHVVSAAYDRTLKVWDLHKG--Y------ 206 (373)
Q Consensus 142 ~~~l~s~s~d~~i~iwd~~~~~~~--~-~~-~~h~~~v~~~~~~~~---~~~~~~s~s~D~~i~vwd~~~~--~------ 206 (373)
...++.||..|.++||++..+... . .+ ..-..+|..+..... .....++-=.-+.+.+|.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 357999999999999998654311 1 11 123467777664331 1222233344566777776311 1
Q ss_pred -eeeEE-eec--CceeEEEEcc----C-CCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeC
Q 017314 207 -CVNTI-IFH--SNCNALAFSM----D-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR 277 (373)
Q Consensus 207 -~~~~~-~~~--~~~~~~~~~~----~-g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 277 (373)
.+..+ .++ .....+++-| . ...|..=+.||.+.+++-+.......+.. .--...+.|.+.-..+++++.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~--~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD--FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC--CCCCcCeEEeecCCEEEEecC
Confidence 11111 111 1222333333 2 24566789999999999776443333322 123445778888889999999
Q ss_pred CCeEEEEEcc
Q 017314 278 DNLHNLFDIR 287 (373)
Q Consensus 278 d~~i~~~d~~ 287 (373)
+..+..|...
T Consensus 195 s~~l~~Yky~ 204 (418)
T PF14727_consen 195 SWTLECYKYQ 204 (418)
T ss_pred ceeEEEecHH
Confidence 9888888754
No 461
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.59 E-value=5.8 Score=22.77 Aligned_cols=36 Identities=19% Similarity=0.090 Sum_probs=24.7
Q ss_pred EEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEE
Q 017314 187 HVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAF 222 (373)
Q Consensus 187 ~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 222 (373)
.+++.-.+++|.++|..++..+..+........++|
T Consensus 6 lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 6 LYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 445555688999999988877777665444444444
No 462
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=83.47 E-value=13 Score=26.09 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=27.4
Q ss_pred EeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEe
Q 017314 232 GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTS 275 (373)
Q Consensus 232 g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 275 (373)
+..+|.+--||..+++...-+.. ..--+.+++++|+.+++.+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~--L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG--LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE--ESSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhC--CCccCeEEEcCCCCEEEEE
Confidence 34467888999999875433333 2467889999999977665
No 463
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.42 E-value=15 Score=34.73 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=45.9
Q ss_pred CeeeeEECCCCcEEEEEeCCCcEEEEE---------ccCceEEE---E-------ec-cCCccEEEEEEcCCC---CcEE
Q 017314 305 NWSRSCISPDESYVAAGSADGSVYIWS---------ISKADIVR---T-------LK-EHTAPVLSCSWSGLG---KPLA 361 (373)
Q Consensus 305 ~~~~~~~s~~~~~l~sgs~Dg~i~iwd---------~~~~~~~~---~-------l~-~h~~~V~~~~~s~~g---~~l~ 361 (373)
...++.+++.|+.++-.+.+|.+.++= +++|+..- + +. ...-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 334566889999999999999655543 12332211 1 11 122356788999986 5788
Q ss_pred EEeCCCeEEEcC
Q 017314 362 SADKNGVVCVWT 373 (373)
Q Consensus 362 s~s~dg~i~iW~ 373 (373)
.-+.|..||+|+
T Consensus 185 iL~sdnviRiy~ 196 (741)
T KOG4460|consen 185 LLTSDNVIRIYS 196 (741)
T ss_pred EEecCcEEEEEe
Confidence 888999999985
No 464
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=83.23 E-value=35 Score=30.83 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=15.5
Q ss_pred CCCCEEEEeeCC-----------CcEEEEeCCCCc
Q 017314 98 YNSARLISGGQD-----------KSIKLWDTNTGS 121 (373)
Q Consensus 98 ~~~~~l~s~s~D-----------~~v~iwd~~~~~ 121 (373)
.++...+.||.+ ..+..||..++.
T Consensus 62 ~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~ 96 (346)
T TIGR03547 62 IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS 96 (346)
T ss_pred ECCEEEEEeCCCCCCCCCcceecccEEEEECCCCE
Confidence 356777777753 246778877654
No 465
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=83.13 E-value=31 Score=30.20 Aligned_cols=92 Identities=24% Similarity=0.299 Sum_probs=55.0
Q ss_pred CcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEe------CCCcEEEEEcCCCeeEEEeec-C----CCcEEEE
Q 017314 110 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS------SSNNLYVWDVNSGRVRHTLTG-H----TDKVCAV 178 (373)
Q Consensus 110 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s------~d~~i~iwd~~~~~~~~~~~~-h----~~~v~~~ 178 (373)
..|.+||..+.+-...-.+-.+.|+++.|..+...+++|. ....+..||..+..- ..+.+ - ..+|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence 3588999887665444445568899999986666666664 345688899877643 23333 1 2567776
Q ss_pred EEeeCCCC-EEEEEe-C--CCcEEEEEc
Q 017314 179 DVSKISSR-HVVSAA-Y--DRTLKVWDL 202 (373)
Q Consensus 179 ~~~~~~~~-~~~s~s-~--D~~i~vwd~ 202 (373)
.+...+.. ..+.|. . +..|..||-
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcC
Confidence 66443433 333333 2 233555553
No 466
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.02 E-value=0.18 Score=46.38 Aligned_cols=142 Identities=11% Similarity=0.172 Sum_probs=94.4
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEE-eeCCCeEEEEEccccceeeeeee
Q 017314 219 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILT-SGRDNLHNLFDIRSLEVCGSLRA 297 (373)
Q Consensus 219 ~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~d~~i~~~d~~~~~~~~~~~~ 297 (373)
...|.|.+..++.++.+..+..||-.. +...+.... ..--.++|+.++..++. +-..+.+.+||+.+... .++..
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n~t--g~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~ 114 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAG-QVILELNPT--GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLES 114 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhc-ceecccCCc--hhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhc
Confidence 455777777788888888888898643 333332221 34456777777775544 55678899999875321 12211
Q ss_pred cCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEEeCCCe
Q 017314 298 TGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGV 368 (373)
Q Consensus 298 ~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~s~dg~ 368 (373)
.+.... +-..+++.+..++.|...|.+.|++..+.+.+-....|...+++.+|.+.+ +.+.++.|..
T Consensus 115 gg~~s~---sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~ 181 (615)
T KOG2247|consen 115 GGTSSK---SLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNT 181 (615)
T ss_pred cCcchH---HHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHH
Confidence 111110 113467888889999999999999988877766666699999999999865 5566666643
No 467
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=82.62 E-value=8.7 Score=35.48 Aligned_cols=159 Identities=14% Similarity=0.093 Sum_probs=88.9
Q ss_pred cCccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceee-ec-ccccc----ceE-EEEEcCCCCEEEEEeCCCcEEEE
Q 017314 85 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSS-TL-YGCLG----SVL-DLAITHDNRSVIAASSSNNLYVW 157 (373)
Q Consensus 85 ~~h~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-~~-~~~~~----~v~-~~~~~~~~~~l~s~s~d~~i~iw 157 (373)
...-..|..+...|||+.|..-+. ..+.++++.+..... .+ ....+ .|+ .+..-..|..++.++.||.|.-|
T Consensus 217 ~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 217 SVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW 295 (733)
T ss_pred CCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeee
Confidence 334456778899999998876665 688899887543211 11 11011 111 11112345567888888888766
Q ss_pred -EcCCC-ee----EEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCceeEEEEccCCCEEEE
Q 017314 158 -DVNSG-RV----RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFS 231 (373)
Q Consensus 158 -d~~~~-~~----~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s 231 (373)
|++.+ ++ ++.++-...++..+.- ....+-+++-+..|++.++-....+.+-..........+++||++.++++
T Consensus 296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~p-e~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~ 374 (733)
T COG4590 296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLP-ETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLS 374 (733)
T ss_pred eeeecCCCCcceeeeccccCcccceeecc-ccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchhee
Confidence 55432 21 1122111122332221 12344577778888888776544333222222234566889999999886
Q ss_pred EeCCCcEEEEECCCC
Q 017314 232 GHIDGNLRLWDIQTG 246 (373)
Q Consensus 232 g~~dg~i~iwd~~~~ 246 (373)
- ..|.|+++.+.+.
T Consensus 375 e-~~gki~~~~l~Nr 388 (733)
T COG4590 375 E-DQGKIRLAQLENR 388 (733)
T ss_pred e-cCCceEEEEecCC
Confidence 4 3567999887654
No 468
>PLN02153 epithiospecifier protein
Probab=82.34 E-value=38 Score=30.58 Aligned_cols=65 Identities=12% Similarity=0.127 Sum_probs=32.7
Q ss_pred CCCEEEEEeCC-----CcEEEEEccCCeeeeEEee-----cC-ceeEEEEccCCCEEEEEeCC-----------CcEEEE
Q 017314 184 SSRHVVSAAYD-----RTLKVWDLHKGYCVNTIIF-----HS-NCNALAFSMDGQTIFSGHID-----------GNLRLW 241 (373)
Q Consensus 184 ~~~~~~s~s~D-----~~i~vwd~~~~~~~~~~~~-----~~-~~~~~~~~~~g~~l~sg~~d-----------g~i~iw 241 (373)
.+..++.|+.+ ..+.++|..+..-...-.. +. .....+...+++..+.|+.+ ..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 35566666653 3467788876543221111 11 11112222355655666643 247788
Q ss_pred ECCCCee
Q 017314 242 DIQTGKL 248 (373)
Q Consensus 242 d~~~~~~ 248 (373)
|+.+.+-
T Consensus 165 d~~~~~W 171 (341)
T PLN02153 165 NIADGKW 171 (341)
T ss_pred ECCCCeE
Confidence 8877543
No 469
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=81.73 E-value=28 Score=29.70 Aligned_cols=139 Identities=17% Similarity=0.282 Sum_probs=73.7
Q ss_pred EEEEEcCCCeeEEEeecCCCcEEE-EEEeeCCCCEEEEEeC---CCcEEEEEccC--Ceee-----eEEeecCceeEEEE
Q 017314 154 LYVWDVNSGRVRHTLTGHTDKVCA-VDVSKISSRHVVSAAY---DRTLKVWDLHK--GYCV-----NTIIFHSNCNALAF 222 (373)
Q Consensus 154 i~iwd~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~s~s~---D~~i~vwd~~~--~~~~-----~~~~~~~~~~~~~~ 222 (373)
-.+||+.+++.. -+.-.++.-++ -.+.+ +++.+.+|+. .+.+|+++... +.+. ..+.....-..+..
T Consensus 48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcEE-eccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 457888887643 22222332221 12333 6788888765 35578887543 1111 01111222345566
Q ss_pred ccCCCEEEEEeCCC-cEEEEECCCC-eeeEEE--ec-----ccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceee
Q 017314 223 SMDGQTIFSGHIDG-NLRLWDIQTG-KLLSEV--AA-----HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG 293 (373)
Q Consensus 223 ~~~g~~l~sg~~dg-~i~iwd~~~~-~~~~~~--~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~ 293 (373)
-|||+.|+.|+.+. +..+|+-+.. .....+ .. ....--.-+.+.|+|++++.+..+.. +||..+.+.+.
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~--i~d~~~n~v~~ 203 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI--IYDYKTNTVVR 203 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE--EEeCCCCeEEe
Confidence 78999999887764 4566654221 111111 00 00011224667899999999887654 56877765555
Q ss_pred eee
Q 017314 294 SLR 296 (373)
Q Consensus 294 ~~~ 296 (373)
.+.
T Consensus 204 ~lP 206 (243)
T PF07250_consen 204 TLP 206 (243)
T ss_pred eCC
Confidence 443
No 470
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.54 E-value=18 Score=34.23 Aligned_cols=28 Identities=7% Similarity=-0.072 Sum_probs=23.7
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEE
Q 017314 88 EGGCASILFEYNSARLISGGQDKSIKLW 115 (373)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~s~D~~v~iw 115 (373)
.-.|..+..++.|..++-+|.||.+.++
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEE
Confidence 3467889999999999999999987765
No 471
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=81.00 E-value=10 Score=36.81 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=43.5
Q ss_pred cCCCEEEEEeCCCcEEEEECCC----CeeeEEEecc---------------------cccceEEEEEcC----CCCEEEE
Q 017314 224 MDGQTIFSGHIDGNLRLWDIQT----GKLLSEVAAH---------------------SLAAVTSISLSR----SGNIILT 274 (373)
Q Consensus 224 ~~g~~l~sg~~dg~i~iwd~~~----~~~~~~~~~~---------------------~~~~v~~~~~~~----~~~~l~s 274 (373)
++...++.+..||.+-...... +......... ......+++++. +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4666778888888887777653 2222111110 113455666666 7789999
Q ss_pred eeCCCeEEEEEccccceeeee
Q 017314 275 SGRDNLHNLFDIRSLEVCGSL 295 (373)
Q Consensus 275 ~~~d~~i~~~d~~~~~~~~~~ 295 (373)
-+.|+.+|+||+.+..++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999998875543
No 472
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=80.98 E-value=39 Score=29.92 Aligned_cols=162 Identities=15% Similarity=0.179 Sum_probs=0.0
Q ss_pred EeCCCcEEEEEccCCeeeeEEeecC-------------ceeEEEEccCCCEEEEEeC------------------CCcEE
Q 017314 191 AAYDRTLKVWDLHKGYCVNTIIFHS-------------NCNALAFSMDGQTIFSGHI------------------DGNLR 239 (373)
Q Consensus 191 ~s~D~~i~vwd~~~~~~~~~~~~~~-------------~~~~~~~~~~g~~l~sg~~------------------dg~i~ 239 (373)
|-..|.+.+.| ...+.+..+.... ..-.+.+.++|+.|++... |+.+.
T Consensus 21 g~g~G~~~~lD-~~y~~i~~v~~~~~~~~~~~~~~~~~d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~ 99 (299)
T PF14269_consen 21 GYGYGSYVILD-SSYEVIWNVSAGNDFGTPDGEPGSYADHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQ 99 (299)
T ss_pred ccccceEEEEC-CCCcEEEEEECCCcccccccccCccCCccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeE
Q ss_pred EEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEE
Q 017314 240 LWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVA 319 (373)
Q Consensus 240 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 319 (373)
-.|+.+++++.+......-.................+....--.+-+.+ +...++|.||+
T Consensus 100 EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNs--------------------V~~~~~G~yLi 159 (299)
T PF14269_consen 100 EIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINS--------------------VDKDDDGDYLI 159 (299)
T ss_pred EeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeee--------------------eeecCCccEEE
Q ss_pred EEeCCCcEEEEEccCceEEEEeccCCccEEE-----EEEcCCCCcEEEEeCCCeEEEcC
Q 017314 320 AGSADGSVYIWSISKADIVRTLKEHTAPVLS-----CSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 320 sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~-----~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
|.-.-..|.+.|..+|+.+-.+.+....=.. .+|-.|-+++-.+..++.|.+++
T Consensus 160 S~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 160 SSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD 218 (299)
T ss_pred EecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc
No 473
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=80.68 E-value=62 Score=32.01 Aligned_cols=162 Identities=12% Similarity=0.122 Sum_probs=83.6
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceee--eccc-ccc-ceEE-----EEEcCCCCEEEEEeC---C-CcE
Q 017314 88 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSS--TLYG-CLG-SVLD-----LAITHDNRSVIAASS---S-NNL 154 (373)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~--~~~~-~~~-~v~~-----~~~~~~~~~l~s~s~---d-~~i 154 (373)
...|-++.|..++..++..-..|.|.+||...+.... .+.. +.. .+.+ ........++++.+. + -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 4678899999999999999999999999993322211 1111 111 1111 111111234444443 2 257
Q ss_pred EEEEcC-CCeeEEEee---cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecCce-----eEEEEc-c
Q 017314 155 YVWDVN-SGRVRHTLT---GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC-----NALAFS-M 224 (373)
Q Consensus 155 ~iwd~~-~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~-~ 224 (373)
+++.+. .......+. .+........|+-..+....- .+++|.+|.+..-+..+++....-+ ..+++. |
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence 788771 112222221 111111222233223332222 6789999999877766666554211 122332 3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeeEEE
Q 017314 225 DGQTIFSGHIDGNLRLWDIQTGKLLSEV 252 (373)
Q Consensus 225 ~g~~l~sg~~dg~i~iwd~~~~~~~~~~ 252 (373)
..++++-+ .+.+|.+.|+.-...+.++
T Consensus 287 s~nRvLLs-~~nkIyLld~~~~siLse~ 313 (670)
T PF10395_consen 287 SPNRVLLS-VNNKIYLLDLKFESILSEF 313 (670)
T ss_pred CCCeEEEE-cCCEEEEEeehhhhhhhhh
Confidence 33343333 3578999998755544444
No 474
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.43 E-value=43 Score=35.47 Aligned_cols=139 Identities=20% Similarity=0.391 Sum_probs=82.0
Q ss_pred EEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCC-------EEEEEeCCCcEEEEEcc----CCee---eeEEe
Q 017314 147 AASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR-------HVVSAAYDRTLKVWDLH----KGYC---VNTII 212 (373)
Q Consensus 147 s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-------~~~s~s~D~~i~vwd~~----~~~~---~~~~~ 212 (373)
..+-|+.+.+|+.+++.....+.+-+..|..|..-.+..+ +++.-+.--.|.++-+. ++.. ...+.
T Consensus 94 WiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 94 WITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee
Confidence 4567889999999987666666666666665554322221 22222222334444332 1110 00111
Q ss_pred e---cCceeEEEEccCCCEEEEEeCCCcEEEEEC----CCC---e-e----------------eEEEecccccceEEEEE
Q 017314 213 F---HSNCNALAFSMDGQTIFSGHIDGNLRLWDI----QTG---K-L----------------LSEVAAHSLAAVTSISL 265 (373)
Q Consensus 213 ~---~~~~~~~~~~~~g~~l~sg~~dg~i~iwd~----~~~---~-~----------------~~~~~~~~~~~v~~~~~ 265 (373)
. +..++++....+|+.+++|- || .+|.+ ..+ + + +..+.+.+..+|..+.+
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I 250 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI 250 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe
Confidence 1 23478888788888777665 45 44443 111 1 0 11122233468999999
Q ss_pred cCCCCEEEEeeCCCeEEEEEccc
Q 017314 266 SRSGNIILTSGRDNLHNLFDIRS 288 (373)
Q Consensus 266 ~~~~~~l~s~~~d~~i~~~d~~~ 288 (373)
+..-+++.+-+..+++.+||+..
T Consensus 251 D~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 251 DNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccccceeeeeccCceEEEEEccC
Confidence 99999999999999999999875
No 475
>PRK13684 Ycf48-like protein; Provisional
Probab=80.37 E-value=44 Score=30.12 Aligned_cols=148 Identities=15% Similarity=0.150 Sum_probs=72.5
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEE-EEEcCCCe-eEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCee
Q 017314 130 LGSVLDLAITHDNRSVIAASSSNNLY-VWDVNSGR-VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC 207 (373)
Q Consensus 130 ~~~v~~~~~~~~~~~l~s~s~d~~i~-iwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~ 207 (373)
.+.+.++.+.+++.+++. +..|.+. .+|- .++ -......-...+.++.+.+ ++..++ .+..|.+++=....|..
T Consensus 172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~-vg~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAV-SSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQP-DGNLWM-LARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEE-eCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcC-CCCEEE-EecCCEEEEccCCCCCc
Confidence 346788889888765544 4445443 2222 122 1111122234567777765 344444 34567664322222221
Q ss_pred eeEEeec-----CceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEec--ccccceEEEEEcCCCCEEEEeeCCCe
Q 017314 208 VNTIIFH-----SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA--HSLAAVTSISLSRSGNIILTSGRDNL 280 (373)
Q Consensus 208 ~~~~~~~-----~~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~ 280 (373)
-.....+ .....+.+.|++..++ ++.+|.|. .....++.-..... ......+.+.|..+++.++++ ..+.
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~ 324 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGV 324 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCce
Confidence 1111111 2356788888877555 44567554 34444443333321 111346677777666665544 5555
Q ss_pred EEEE
Q 017314 281 HNLF 284 (373)
Q Consensus 281 i~~~ 284 (373)
|.-+
T Consensus 325 il~~ 328 (334)
T PRK13684 325 LLRY 328 (334)
T ss_pred EEEe
Confidence 5443
No 476
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=80.36 E-value=47 Score=30.38 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=64.3
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeEEEeecC--CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEeecC--cee
Q 017314 143 RSVIAASSSNNLYVWDVNSGRVRHTLTGH--TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS--NCN 218 (373)
Q Consensus 143 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~~~~--~~~ 218 (373)
..++.+..++.+.-.|..++..+.....- ...+.+-.+.. ...++.++.++.+...|.++|..+-...... ...
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~--~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS--DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe--CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 34555678888888888888755432211 11111111111 2348889999988888988888776665554 111
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEec
Q 017314 219 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA 254 (373)
Q Consensus 219 ~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 254 (373)
.-.+-.++ .++.++.++.+...|..+|+.......
T Consensus 147 ~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~ 181 (370)
T COG1520 147 SPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYET 181 (370)
T ss_pred cCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEec
Confidence 11122233 344455788888888888887665433
No 477
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.79 E-value=0.27 Score=45.24 Aligned_cols=144 Identities=17% Similarity=0.215 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEEe
Q 017314 133 VLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII 212 (373)
Q Consensus 133 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~~ 212 (373)
.....|.+.+..++.++.+..+..||-.. +....+. -+.....++|....+..++.+-..+.+.+||+.+... +++.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLE 113 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHh
Confidence 34456777777788888888999998543 2222211 2233334555543334455667788999999976432 1122
Q ss_pred ecC--ceeEEEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeE
Q 017314 213 FHS--NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLH 281 (373)
Q Consensus 213 ~~~--~~~~~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i 281 (373)
... .-.-+.|++.+..++.|...|.+.|++..+.+.+...-.|. .+++++++.+.+. .+.++.|.++
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~-RRgtq~av~lEd~-vil~dcd~~L 182 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQ-RRGTQIAVTLEDY-VILCDCDNTL 182 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccc-cceeEEEecccce-eeecCcHHHH
Confidence 111 12236788888888889899999999988776655444344 6888899888664 4444455443
No 478
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=79.61 E-value=50 Score=30.30 Aligned_cols=12 Identities=17% Similarity=0.238 Sum_probs=8.8
Q ss_pred cEEEEECCCCee
Q 017314 237 NLRLWDIQTGKL 248 (373)
Q Consensus 237 ~i~iwd~~~~~~ 248 (373)
.+.+||..+.+-
T Consensus 190 ~v~~YD~~t~~W 201 (376)
T PRK14131 190 EVLSYDPSTNQW 201 (376)
T ss_pred eEEEEECCCCee
Confidence 588899877654
No 479
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.62 E-value=49 Score=34.82 Aligned_cols=31 Identities=6% Similarity=0.123 Sum_probs=25.7
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 017314 131 GSVLDLAITHDNRSVIAASSSNNLYVWDVNS 161 (373)
Q Consensus 131 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 161 (373)
.....++|+|....++.+...|.|++|-...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccc
Confidence 3445689999999999999999999997543
No 480
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=77.94 E-value=52 Score=29.54 Aligned_cols=102 Identities=19% Similarity=0.220 Sum_probs=60.6
Q ss_pred eEEEEEcCCCCEEEEeeCC------CeEEEEEccccceeeeeeec-----------CCeeecCeeeeEECCCCcEEEEEe
Q 017314 260 VTSISLSRSGNIILTSGRD------NLHNLFDIRSLEVCGSLRAT-----------GNRVASNWSRSCISPDESYVAAGS 322 (373)
Q Consensus 260 v~~~~~~~~~~~l~s~~~d------~~i~~~d~~~~~~~~~~~~~-----------~~~~~~~~~~~~~s~~~~~l~sgs 322 (373)
.-+|++.+++.++++.-.+ ..|..++.. +.....+... .......+..++++|+|+.|.++.
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 3467788888888887777 788888865 4443333211 112233455678999999666554
Q ss_pred C-----CC--c-------EEEEEc--cC-ceEEEE----ecc-----CCccEEEEEEcCCCCcEEE
Q 017314 323 A-----DG--S-------VYIWSI--SK-ADIVRT----LKE-----HTAPVLSCSWSGLGKPLAS 362 (373)
Q Consensus 323 ~-----Dg--~-------i~iwd~--~~-~~~~~~----l~~-----h~~~V~~~~~s~~g~~l~s 362 (373)
+ |+ . ++|+.. .+ +..... +.. ....|..+.+-|++++|+-
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 3 32 1 555544 33 222222 222 3456788888889887654
No 481
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=77.77 E-value=6.1 Score=21.28 Aligned_cols=24 Identities=38% Similarity=0.649 Sum_probs=20.2
Q ss_pred EEEEEeCCCcEEEEECCCCeeeEE
Q 017314 228 TIFSGHIDGNLRLWDIQTGKLLSE 251 (373)
Q Consensus 228 ~l~sg~~dg~i~iwd~~~~~~~~~ 251 (373)
.++.++.+|.+..+|..+|+.+.+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 577888999999999999887654
No 482
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=77.63 E-value=29 Score=26.44 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=50.0
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeCCCCce--------eeeccccccceEEEEEcC----CCCEEEEEeCCCcEEEEEcC
Q 017314 93 SILFEYNSARLISGGQDKSIKLWDTNTGSL--------SSTLYGCLGSVLDLAITH----DNRSVIAASSSNNLYVWDVN 160 (373)
Q Consensus 93 ~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~--------~~~~~~~~~~v~~~~~~~----~~~~l~s~s~d~~i~iwd~~ 160 (373)
.-.|......|+.++.-+.|-|.+...... +..+ .-...|++++-.+ ++.-++.-+...++..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence 345665666788888888999988764321 1112 2234566665332 22334444555679999998
Q ss_pred CCeeEEEeecCCCcEEEEEEe
Q 017314 161 SGRVRHTLTGHTDKVCAVDVS 181 (373)
Q Consensus 161 ~~~~~~~~~~h~~~v~~~~~~ 181 (373)
...-+. ++.-.+.|.++.+-
T Consensus 82 ~N~d~F-yke~~DGvn~i~~g 101 (136)
T PF14781_consen 82 NNSDLF-YKEVPDGVNAIVIG 101 (136)
T ss_pred cCchhh-hhhCccceeEEEEE
Confidence 765432 22334666666553
No 483
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=77.46 E-value=55 Score=29.54 Aligned_cols=41 Identities=5% Similarity=-0.073 Sum_probs=19.8
Q ss_pred CcEEEEEccCCeeeeEEeec--CceeEEEEccCCCEEEEEeCC
Q 017314 195 RTLKVWDLHKGYCVNTIIFH--SNCNALAFSMDGQTIFSGHID 235 (373)
Q Consensus 195 ~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~sg~~d 235 (373)
..+.+||..++.-...-... ..........++++.+.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 46778888766433211111 111222233466666676653
No 484
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=76.75 E-value=1.1e+02 Score=32.77 Aligned_cols=22 Identities=9% Similarity=0.016 Sum_probs=15.7
Q ss_pred cCCccEEEEEEcCCCCcEEEEe
Q 017314 343 EHTAPVLSCSWSGLGKPLASAD 364 (373)
Q Consensus 343 ~h~~~V~~~~~s~~g~~l~s~s 364 (373)
.|-....+++.+|||..+++-+
T Consensus 659 A~lnsp~alaVsPdg~v~IAD~ 680 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIADS 680 (1899)
T ss_pred cccCCcceEEECCCCcEEEecC
Confidence 3455678899999998665543
No 485
>PLN02193 nitrile-specifier protein
Probab=76.52 E-value=72 Score=30.40 Aligned_cols=151 Identities=9% Similarity=-0.010 Sum_probs=70.6
Q ss_pred CCCEEEEEeCC-----CcEEEEEccCCeeeeEEee---cC-ceeEEEEccCCCEEEEEeCCC-----cEEEEECCCCeee
Q 017314 184 SSRHVVSAAYD-----RTLKVWDLHKGYCVNTIIF---HS-NCNALAFSMDGQTIFSGHIDG-----NLRLWDIQTGKLL 249 (373)
Q Consensus 184 ~~~~~~s~s~D-----~~i~vwd~~~~~~~~~~~~---~~-~~~~~~~~~~g~~l~sg~~dg-----~i~iwd~~~~~~~ 249 (373)
.....+.|+.+ ..+..+|+.+......... +. .....+..-+++..+.|+.++ .+..||+.+.+-.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 34556667655 3577888877654321111 11 111111223455556666543 4677888765432
Q ss_pred EEEec----ccccceEEEEEcCCCCEEEEeeCC----CeEEEEEccccceeeeeeecCCeeecCeeeeEECCCCcEEEEE
Q 017314 250 SEVAA----HSLAAVTSISLSRSGNIILTSGRD----NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG 321 (373)
Q Consensus 250 ~~~~~----~~~~~v~~~~~~~~~~~l~s~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg 321 (373)
..-.. .......... -++++++.++.+ +.+.+||+.+.+-...-.....+.... ...+...++++++.|
T Consensus 308 ~~~~~~~~~~~R~~~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~-~~~~~~~~~~iyv~G 384 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERS-VFASAAVGKHIVIFG 384 (470)
T ss_pred eCCCCCCCCCCCCCcEEEE--ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcc-eeEEEEECCEEEEEC
Confidence 21100 0001111122 256677766655 457788887654321111000011111 111223356777777
Q ss_pred eCC--------------CcEEEEEccCceE
Q 017314 322 SAD--------------GSVYIWSISKADI 337 (373)
Q Consensus 322 s~D--------------g~i~iwd~~~~~~ 337 (373)
+.+ ..+.++|+.+.+-
T Consensus 385 G~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 385 GEIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred CccCCccccccCccceeccEEEEEcCcCEE
Confidence 753 2478888876543
No 486
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.01 E-value=1.2e+02 Score=32.13 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=24.8
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 017314 90 GCASILFEYNSARLISGGQDKSIKLWDTN 118 (373)
Q Consensus 90 ~v~~~~~~~~~~~l~s~s~D~~v~iwd~~ 118 (373)
.-..++|+|.-..++-|...|.|+++-..
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEeccc
Confidence 34578999999999999999999999654
No 487
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.97 E-value=1.2e+02 Score=32.34 Aligned_cols=135 Identities=13% Similarity=0.283 Sum_probs=75.2
Q ss_pred eCCCcEEEEeCCCCceeeeccccccceEEEEE--------cCCCCEEEEEeCCCcEEEEEcCC----Ce---eEEEeecC
Q 017314 107 GQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAI--------THDNRSVIAASSSNNLYVWDVNS----GR---VRHTLTGH 171 (373)
Q Consensus 107 s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~s~s~d~~i~iwd~~~----~~---~~~~~~~h 171 (373)
+-|..+.+|+.+++.....+.+-...|..|.. -|.=++++.-+.--.|.++-+.- +. ....++-.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 45889999999997766666666666666552 22233444444444455554321 11 11112212
Q ss_pred C--CcEEEEEEeeCCCCEEEEEeCCCcEEEEEc----cCCe----ee-------------eE---Ee--ecCceeEEEEc
Q 017314 172 T--DKVCAVDVSKISSRHVVSAAYDRTLKVWDL----HKGY----CV-------------NT---II--FHSNCNALAFS 223 (373)
Q Consensus 172 ~--~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~----~~~~----~~-------------~~---~~--~~~~~~~~~~~ 223 (373)
. -.|.++. +..+++ ++-+|.|| .+|.+ ..+. |. .+ +. ....+..+++.
T Consensus 176 ~dg~~V~~I~-~t~nGR-IF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 176 VDGVSVNCIT-YTENGR-IFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred cCCceEEEEE-eccCCc-EEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 3 3456665 333555 44455666 55554 2210 10 01 11 11246677777
Q ss_pred cCCCEEEEEeCCCcEEEEECCC
Q 017314 224 MDGQTIFSGHIDGNLRLWDIQT 245 (373)
Q Consensus 224 ~~g~~l~sg~~dg~i~iwd~~~ 245 (373)
..-..+++=+..|+|++||+..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 7777888999999999999965
No 488
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=73.98 E-value=10 Score=21.48 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=23.2
Q ss_pred EEEEEeCCCcEEEEECCCCeeeEEEecc
Q 017314 228 TIFSGHIDGNLRLWDIQTGKLLSEVAAH 255 (373)
Q Consensus 228 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 255 (373)
.++.++.||.|.-.|.++|+.+..+...
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 4667799999999999999988877553
No 489
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=73.37 E-value=75 Score=29.16 Aligned_cols=24 Identities=13% Similarity=0.342 Sum_probs=14.7
Q ss_pred CCCCEEEEEeCC-----------CcEEEEEcCCCe
Q 017314 140 HDNRSVIAASSS-----------NNLYVWDVNSGR 163 (373)
Q Consensus 140 ~~~~~l~s~s~d-----------~~i~iwd~~~~~ 163 (373)
.++...+.|+.+ ..+..||+.+.+
T Consensus 83 ~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~ 117 (376)
T PRK14131 83 IDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS 117 (376)
T ss_pred ECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence 355666666643 247778887654
No 490
>PRK05560 DNA gyrase subunit A; Validated
Probab=72.44 E-value=1.2e+02 Score=31.18 Aligned_cols=251 Identities=10% Similarity=0.050 Sum_probs=117.2
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCCce---------eeeccccccceEEEEEcCCCCEEEEEeCCCcEEE---EEcCC---
Q 017314 97 EYNSARLISGGQDKSIKLWDTNTGSL---------SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV---WDVNS--- 161 (373)
Q Consensus 97 ~~~~~~l~s~s~D~~v~iwd~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~i---wd~~~--- 161 (373)
-++...++.-+.+|.|+.-...+... ...+.. ...+..+........|+..+..|.+.. +++..
T Consensus 495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~ 573 (805)
T PRK05560 495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKE-DDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASR 573 (805)
T ss_pred cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCC-CCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCc
Confidence 44667788888899888776543211 011111 123333333344455666666665544 34433
Q ss_pred ---CeeE---EEeecCCCcEEEEEEeeC-CCCEEEEEeCCCcEEEEEccCC-------eeeeEEeecCceeEEEEccCCC
Q 017314 162 ---GRVR---HTLTGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVWDLHKG-------YCVNTIIFHSNCNALAFSMDGQ 227 (373)
Q Consensus 162 ---~~~~---~~~~~h~~~v~~~~~~~~-~~~~~~s~s~D~~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~g~ 227 (373)
|.++ ..+.....-|.++.+... ....++..+.+|.++--++..- ...-.+.....+..+.......
T Consensus 574 ~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~d 653 (805)
T PRK05560 574 TARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGDD 653 (805)
T ss_pred CCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCCCC
Confidence 2222 112222222334433321 3567889999999987665321 1111111222333333333445
Q ss_pred EEEEEeCCCcEEEEECCC---------CeeeEEEecccccceEEEEEcCCCCEEEEeeCCCeEEEEEccccceee-----
Q 017314 228 TIFSGHIDGNLRLWDIQT---------GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG----- 293 (373)
Q Consensus 228 ~l~sg~~dg~i~iwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~----- 293 (373)
.++..+..|.+..+.... |.....+... ...+..+.+.++..+++..+..|.++...+.......
T Consensus 654 ~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~-E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG 732 (805)
T PRK05560 654 DILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREG-DEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKG 732 (805)
T ss_pred EEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCC-CEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCc
Confidence 666667777766555421 1112222111 1234444455544467778888888877654332211
Q ss_pred --eee--ecCCeeecCeeeeEECCCCcEEEEEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCC
Q 017314 294 --SLR--ATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGL 356 (373)
Q Consensus 294 --~~~--~~~~~~~~~~~~~~~s~~~~~l~sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~ 356 (373)
.+. .....+.. ...... ...++..+.+|.+..++...- .........|..+....+
T Consensus 733 ~~~lkl~~~~d~lv~---v~~v~~-~~~v~i~T~~G~~lrf~~~eI---~~~gR~a~GVk~I~L~~~ 792 (805)
T PRK05560 733 VITIKITEKNGKLVG---ALPVDD-DDEIMLITDSGKLIRTRVSEI---SITGRNTQGVRLIRLDEG 792 (805)
T ss_pred EEeeeccCCCCeEEE---EEEecC-CCeEEEEecCCeEEEEEHHHC---CccccCCCCeeeEecCCC
Confidence 111 10111111 111222 344556677777777765431 122223345666766543
No 491
>PLN02153 epithiospecifier protein
Probab=71.73 E-value=77 Score=28.56 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=32.1
Q ss_pred CCCEEEEeeCC-------CcEEEEeCCCCceeeecc-cc--cc---ceEEEEEcCCCCEEEEEeCC-----CcEEEEEcC
Q 017314 99 NSARLISGGQD-------KSIKLWDTNTGSLSSTLY-GC--LG---SVLDLAITHDNRSVIAASSS-----NNLYVWDVN 160 (373)
Q Consensus 99 ~~~~l~s~s~D-------~~v~iwd~~~~~~~~~~~-~~--~~---~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~ 160 (373)
++..++.||.+ ..+.+||+.+.+-...-. +. .. ....+. -++..++.|+.+ ..+.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA--VGTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE--ECCEEEEECCCCCCCccCcEEEEECC
Confidence 45566667753 357788887653221110 00 00 111122 245566666643 357788987
Q ss_pred CCe
Q 017314 161 SGR 163 (373)
Q Consensus 161 ~~~ 163 (373)
+.+
T Consensus 110 t~~ 112 (341)
T PLN02153 110 KNE 112 (341)
T ss_pred CCE
Confidence 754
No 492
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=71.54 E-value=89 Score=29.20 Aligned_cols=27 Identities=15% Similarity=0.341 Sum_probs=23.5
Q ss_pred cEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 347 PVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 347 ~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
.|.+++..+..+.|++.+.+|.|.+|+
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~ 217 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWD 217 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEE
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEE
Confidence 399999999889999999999999995
No 493
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=71.47 E-value=72 Score=28.09 Aligned_cols=165 Identities=13% Similarity=0.116 Sum_probs=85.8
Q ss_pred cEEEEeCCCCceeeeccc------cccceEEEEEcCCC-----CEEE-EEeCCCcEEEEEcCCCeeEEEeecCCCcEE--
Q 017314 111 SIKLWDTNTGSLSSTLYG------CLGSVLDLAITHDN-----RSVI-AASSSNNLYVWDVNSGRVRHTLTGHTDKVC-- 176 (373)
Q Consensus 111 ~v~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~-----~~l~-s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~-- 176 (373)
.|.+||+.+++.++++.- ..+.+.++.+.... .+.+ +=+..+.+-|+|+.+++..+.+..+...-.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 677788888877655432 23456777776522 2333 333446899999999887666554322110
Q ss_pred ------EEEEeeCCCCEEEEEe---CCCcEEEEEccCCeee-----------------------eEEee-cCceeEEEEc
Q 017314 177 ------AVDVSKISSRHVVSAA---YDRTLKVWDLHKGYCV-----------------------NTIIF-HSNCNALAFS 223 (373)
Q Consensus 177 ------~~~~~~~~~~~~~s~s---~D~~i~vwd~~~~~~~-----------------------~~~~~-~~~~~~~~~~ 223 (373)
...+...++..=++.+ .|+..-.|..-++..+ ..+-. ......++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 0111111221111222 1333333332222111 11111 1245678889
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCe---eeEEEe--cccccceEEEEEcC--CCCEEEEe
Q 017314 224 MDGQTIFSGHIDGNLRLWDIQTGK---LLSEVA--AHSLAAVTSISLSR--SGNIILTS 275 (373)
Q Consensus 224 ~~g~~l~sg~~dg~i~iwd~~~~~---~~~~~~--~~~~~~v~~~~~~~--~~~~l~s~ 275 (373)
++|...++--..+.|..||..+.- ....+. ......+.++++.+ +|.+.+.+
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 999988888899999999987621 112221 11134678888888 77655544
No 494
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=71.40 E-value=11 Score=26.38 Aligned_cols=43 Identities=14% Similarity=0.013 Sum_probs=27.5
Q ss_pred EEeCCCcEEEEEccCceEEEEeccCCccEEEEEEcCCCCcEEEE
Q 017314 320 AGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASA 363 (373)
Q Consensus 320 sgs~Dg~i~iwd~~~~~~~~~l~~h~~~V~~~~~s~~g~~l~s~ 363 (373)
.+..+|.+.-||..+++..-.+.+-. --+.|+.|||+.+|+.+
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~L~-fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDGLY-FPNGVALSPDESFVLVA 74 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEEES-SEEEEEE-TTSSEEEEE
T ss_pred cCCCCcCEEEEECCCCeEEEehhCCC-ccCeEEEcCCCCEEEEE
Confidence 34557788899999887644444422 45889999999966544
No 495
>PLN02193 nitrile-specifier protein
Probab=68.82 E-value=1.1e+02 Score=29.17 Aligned_cols=188 Identities=12% Similarity=0.093 Sum_probs=86.5
Q ss_pred CCCEEEEeeCC-------CcEEEEeCCCCceeeec-cc-cc--cceEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCC
Q 017314 99 NSARLISGGQD-------KSIKLWDTNTGSLSSTL-YG-CL--GSVLDLAITHDNRSVIAASSS-----NNLYVWDVNSG 162 (373)
Q Consensus 99 ~~~~l~s~s~D-------~~v~iwd~~~~~~~~~~-~~-~~--~~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~ 162 (373)
++..++.||.+ ..+.+||+.+..-...- .+ .. ......+...++...+.|+.+ +.+.+||+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 34556666653 24677888765322110 00 00 000111122345555666654 35788898876
Q ss_pred eeEEEeec---CC-CcEEEEEEeeCCCCEEEEEeCCC-----cEEEEEccCCeeeeEEee----cCceeEEEEccCCCEE
Q 017314 163 RVRHTLTG---HT-DKVCAVDVSKISSRHVVSAAYDR-----TLKVWDLHKGYCVNTIIF----HSNCNALAFSMDGQTI 229 (373)
Q Consensus 163 ~~~~~~~~---h~-~~v~~~~~~~~~~~~~~s~s~D~-----~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~g~~l 229 (373)
+-...-.. .. ..-.++.. ......+.|+.++ .+..||+.+......-.. .......+...+++..
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~--~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiy 332 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAA--DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVW 332 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEE--ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEE
Confidence 43221110 00 00111211 2455666676543 456777766543211100 0011111122356766
Q ss_pred EEEeCC----CcEEEEECCCCeeeEEEec---c-cccceEEEEEcCCCCEEEEeeCC--------------CeEEEEEcc
Q 017314 230 FSGHID----GNLRLWDIQTGKLLSEVAA---H-SLAAVTSISLSRSGNIILTSGRD--------------NLHNLFDIR 287 (373)
Q Consensus 230 ~sg~~d----g~i~iwd~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~l~s~~~d--------------~~i~~~d~~ 287 (373)
+.|+.+ ..+.+||+.+.+-...-.. . ......++. -++++++.++.+ +.+.+||+.
T Consensus 333 viGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~ 410 (470)
T PLN02193 333 VVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA--VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE 410 (470)
T ss_pred EEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE--ECCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence 677655 4588999987654322111 0 111122222 246677777753 236677776
Q ss_pred ccc
Q 017314 288 SLE 290 (373)
Q Consensus 288 ~~~ 290 (373)
+.+
T Consensus 411 t~~ 413 (470)
T PLN02193 411 TLQ 413 (470)
T ss_pred cCE
Confidence 543
No 496
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=67.32 E-value=16 Score=19.04 Aligned_cols=25 Identities=16% Similarity=0.398 Sum_probs=16.5
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEE
Q 017314 260 VTSISLSRSGNIILTSGRDNLHNLF 284 (373)
Q Consensus 260 v~~~~~~~~~~~l~s~~~d~~i~~~ 284 (373)
...++++++|+++++-.....|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567777777777777666666543
No 497
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=67.23 E-value=1.2e+02 Score=29.01 Aligned_cols=121 Identities=16% Similarity=0.186 Sum_probs=58.6
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeeeEEEeccc--ccceEEEEEcCCCCEEEEeeC-------------CCeEEEE
Q 017314 220 LAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS--LAAVTSISLSRSGNIILTSGR-------------DNLHNLF 284 (373)
Q Consensus 220 ~~~~~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~-------------d~~i~~~ 284 (373)
+...++|.+++... ..++.+|+. |+.+....... ...-..+...|+|++|+.+.. ...|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 55678888776554 778888885 55555443322 111345667789998887761 1123334
Q ss_pred EccccceeeeeeecC--------------------CeeecCe---eeeEECC-CCcEEEEEeCCCcEEEEEccCceEEEE
Q 017314 285 DIRSLEVCGSLRATG--------------------NRVASNW---SRSCISP-DESYVAAGSADGSVYIWSISKADIVRT 340 (373)
Q Consensus 285 d~~~~~~~~~~~~~~--------------------~~~~~~~---~~~~~s~-~~~~l~sgs~Dg~i~iwd~~~~~~~~~ 340 (373)
| .+++++..+.... ......| +.+.+.+ ++.+|+|+-.-..|...|..+++..-.
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 4 4444433321100 0001112 2344556 777888877777888889888888777
Q ss_pred eccC
Q 017314 341 LKEH 344 (373)
Q Consensus 341 l~~h 344 (373)
+..|
T Consensus 309 lg~~ 312 (477)
T PF05935_consen 309 LGPP 312 (477)
T ss_dssp ES-S
T ss_pred eCCC
Confidence 6654
No 498
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=67.07 E-value=17 Score=19.07 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCCcEEEEeCCCeEEEcC
Q 017314 347 PVLSCSWSGLGKPLASADKNGVVCVWT 373 (373)
Q Consensus 347 ~V~~~~~s~~g~~l~s~s~dg~i~iW~ 373 (373)
.|.+++-++ .+++.+.+.+.+|||+
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEecC
Confidence 577888765 5888899999999985
No 499
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=67.06 E-value=1e+02 Score=28.28 Aligned_cols=189 Identities=16% Similarity=0.274 Sum_probs=100.1
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeeEEEeecCCCcEEEEEEee---CCCCE--EEEEe-CC---CcEEEEEcc--CCeee
Q 017314 140 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSK---ISSRH--VVSAA-YD---RTLKVWDLH--KGYCV 208 (373)
Q Consensus 140 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~--~~s~s-~D---~~i~vwd~~--~~~~~ 208 (373)
|...+++....++-+.+||+...+ +..+. .+.+..+++-. ..+.. |+.++ .+ .+|++|-+. ++. +
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~-lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKE-LQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-L 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-E-EEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-E
T ss_pred cccceEEEEeCCCCEEEEcCCCcE-EEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-c
Confidence 344577888888899999997554 44443 23344333221 12222 33333 32 479999775 332 2
Q ss_pred eEEee--------cCceeEEEE--cc-CCC-EEEEEeCCCcEEEEECC---CC----eeeEEEecccccceEEEEEcCCC
Q 017314 209 NTIIF--------HSNCNALAF--SM-DGQ-TIFSGHIDGNLRLWDIQ---TG----KLLSEVAAHSLAAVTSISLSRSG 269 (373)
Q Consensus 209 ~~~~~--------~~~~~~~~~--~~-~g~-~l~sg~~dg~i~iwd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~ 269 (373)
..+.. ...+..+|+ +| +|. +++....+|.+..|-+. .+ +.++++... ..+..|..+...
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~--sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG--SQPEGCVVDDET 219 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S--S-EEEEEEETTT
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC--CcceEEEEeccc
Confidence 22211 122445554 44 454 56678889988877663 33 456666654 478899999999
Q ss_pred CEEEEeeCCCeEEEEEccccce-eeeee--ecCCeeecCeeeeEE--CCCC-cEEE-EEeCCCcEEEEEccC
Q 017314 270 NIILTSGRDNLHNLFDIRSLEV-CGSLR--ATGNRVASNWSRSCI--SPDE-SYVA-AGSADGSVYIWSISK 334 (373)
Q Consensus 270 ~~l~s~~~d~~i~~~d~~~~~~-~~~~~--~~~~~~~~~~~~~~~--s~~~-~~l~-sgs~Dg~i~iwd~~~ 334 (373)
..|..+-.+.-|.-|+...... ...+. ..+.........+++ .+++ .||+ |.=.+++..||+...
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 9999999988777777653211 11111 112222223333333 2333 3554 444677899999865
No 500
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=66.26 E-value=1.1e+02 Score=28.37 Aligned_cols=151 Identities=11% Similarity=0.039 Sum_probs=0.0
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCceeeeccccccceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe----
Q 017314 88 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR---- 163 (373)
Q Consensus 88 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~---- 163 (373)
.+....+..++|+..++.+..-..++-||--...-...-......+.++.+.+++..++++...+ .+|....++
T Consensus 238 ~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~--l~~S~d~G~~~~~ 315 (398)
T PLN00033 238 TGTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGG--LYVSKGTGLTEED 315 (398)
T ss_pred ccceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCce--EEEecCCCCcccc
Q ss_pred -eEEEeecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEccCCeeeeEE---eecCceeEEEEccCCCEEEEEeCCCcEE
Q 017314 164 -VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI---IFHSNCNALAFSMDGQTIFSGHIDGNLR 239 (373)
Q Consensus 164 -~~~~~~~h~~~v~~~~~~~~~~~~~~s~s~D~~i~vwd~~~~~~~~~~---~~~~~~~~~~~~~~g~~l~sg~~dg~i~ 239 (373)
....+........-.++...+.+.++.++..|.+....-.-..-.... ....+...+.|.++++.+++|. +|.|-
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-~G~il 394 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-DGVLL 394 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeC-CcEEE
Q ss_pred EE
Q 017314 240 LW 241 (373)
Q Consensus 240 iw 241 (373)
-|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
Done!