BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017315
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 1 MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDR 60
+I PIFY ++P+ VR QT +K+AF KH F + + +Q W+D+LK+V ++ GW +
Sbjct: 125 IILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGKN 182
Query: 61 NEPEFIVDIV 70
++ I D V
Sbjct: 183 DKQGAIADKV 192
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 2 IFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDRN 61
+ PIFY +EP VR QT E F KH A RE+ EKV KWR +L A +SG + +
Sbjct: 98 VMPIFYGVEPNHVRWQTGVLAEQFKKH--ASREDPEKVLKWRQALTNFAQLSG-DCSGDD 154
Query: 62 EPEFIVDIVKEISCK 76
+ + + I EIS K
Sbjct: 155 DSKLVDKIANEISNK 169
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 104/242 (42%), Gaps = 33/242 (13%)
Query: 134 HEFEASCFLANVREIS----KKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR- 188
H CF V +S KSGL+ + L ++L + +S + + + RLR
Sbjct: 171 HSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRL-DQDESFSQRLPLNIEEAKDRLRI 229
Query: 189 -----HKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHE 243
H + LL++DDV + L++ F +I +T+RDK + + + +
Sbjct: 230 LMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRDKSVTDSVMGPKYVVPV 282
Query: 244 HLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWES 303
+ + GL L F + K EQ + S++K G PL + ++G+ L WE
Sbjct: 283 ESSLGKEKGLEILSLFVNMKKADLPEQ-AHSIIKECKGSPLVVSLIGALLRDFP-NRWEY 340
Query: 304 ALQRLERDP----------ENEILD-VLQISFDGLKETEKKIFLDIACFYKGKYIDYVTK 352
L++L+ + E LD + IS + L+E K + D++ K + TK
Sbjct: 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKD--VKVPTK 398
Query: 353 IL 354
+L
Sbjct: 399 VL 400
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 35/243 (14%)
Query: 134 HEFEASCFLANVREIS----KKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR- 188
H CF V +S KSGL+ + L ++L + +S + + + RLR
Sbjct: 177 HSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRL-DQDESFSQRLPLNIEEAKDRLRI 235
Query: 189 -----HKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHE 243
H + LL++DDV + L++ F +I +T+RDK + + + +
Sbjct: 236 LMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRDKSVTDSVMGPKYVVPV 288
Query: 244 HLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAE-WE 302
+ + GL L F + K EQ + S++K G PL + ++G+ L R WE
Sbjct: 289 ESSLGKEKGLEILSLFVNMKKADLPEQ-AHSIIKECKGSPLVVSLIGALL--RDFPNRWE 345
Query: 303 SALQRLERDP----------ENEILD-VLQISFDGLKETEKKIFLDIACFYKGKYIDYVT 351
L++L+ + E LD + IS + L+E K + D++ K + T
Sbjct: 346 YYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKD--VKVPT 403
Query: 352 KIL 354
K+L
Sbjct: 404 KVL 406
>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure
pdb|4IGG|B Chain B, Full-Length Human Alpha-Catenin Crystal Structure
Length = 832
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 285 ALKVLGSFLFGRTIAEWESALQRLERDP-----ENEILDVLQISFDGLKETEKKIFL 336
A K+L + + R + E+A++ L DP ENE +D ++ +DG+++ K + +
Sbjct: 494 ATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRKAVLM 550
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 105/251 (41%), Gaps = 51/251 (20%)
Query: 134 HEFEASCFLANVREIS----KKSGLVFL---------QKQLISQLLNLPDSGVWNVYDGM 180
H CF V +S KSGL+ Q++ SQ L L N+ +
Sbjct: 171 HSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPL------NIEEAK 224
Query: 181 NMIRSRL--RHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDE 238
+ +R + +H + LL++DDV + L++ F +I +T+RDK + D
Sbjct: 225 DRLRVLMLRKHPRSLLILDDVWDPWVLKA-------FDNQCQILLTTRDKSV-----TDS 272
Query: 239 VYMHEHLNYDEA-----LGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL 293
V +H+ E+ GL L F + K + + S++K G PL + ++G+ L
Sbjct: 273 VMGPKHVVPVESGLGREKGLEILSLFVNMKK-EDLPAEAHSIIKECKGSPLVVSLIGALL 331
Query: 294 --FGRTIAEWESALQ-------RLERDPENEILD-VLQISFDGLKETEKKIFLDIACFYK 343
F A + LQ R + E LD + IS + L+E K + D++ K
Sbjct: 332 RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQK 391
Query: 344 GKYIDYVTKIL 354
+ TK+L
Sbjct: 392 D--VKVPTKVL 400
>pdb|1H6G|A Chain A, Alpha-Catenin M-Domain
pdb|1H6G|B Chain B, Alpha-Catenin M-Domain
Length = 256
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 285 ALKVLGSFLFGRTIAEWESALQRLERDP-----ENEILDVLQISFDGLKETEKKIF 335
A K+L + + R + E+A++ L DP ENE +D ++ +DG+++ K +
Sbjct: 199 ATKLLSNTVXPRFTEQVEAAVEALSSDPAQPXDENEFIDASRLVYDGIRDIRKAVL 254
>pdb|1L7C|A Chain A, Alpha-Catenin Fragment, Residues 385-651
pdb|1L7C|B Chain B, Alpha-Catenin Fragment, Residues 385-651
pdb|1L7C|C Chain C, Alpha-Catenin Fragment, Residues 385-651
Length = 269
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 285 ALKVLGSFLFGRTIAEWESALQRLERDP-----ENEILDVLQISFDGLKETEKKIF 335
A K+L + + R + E+A++ L DP ENE +D ++ +DG+++ K +
Sbjct: 193 ATKLLSNTVXPRFTEQVEAAVEALSSDPAQPXDENEFIDASRLVYDGIRDIRKAVL 248
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 104/251 (41%), Gaps = 51/251 (20%)
Query: 134 HEFEASCFLANVREIS----KKSGLVFL---------QKQLISQLLNLPDSGVWNVYDGM 180
H CF V +S KSGL+ Q++ SQ L L N+ +
Sbjct: 178 HSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPL------NIEEAK 231
Query: 181 NMIRSRL--RHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDE 238
+ +R + +H + LL++DDV + L++ F +I +T+ DK + D
Sbjct: 232 DRLRVLMLRKHPRSLLILDDVWDPWVLKA-------FDNQCQILLTTSDKSV-----TDS 279
Query: 239 VYMHEHLNYDEA-----LGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL 293
V +H+ E+ GL L F + K + + S++K G PL + ++G+ L
Sbjct: 280 VMGPKHVVPVESGLGREKGLEILSLFVNMKK-EDLPAEAHSIIKECKGSPLVVSLIGALL 338
Query: 294 --FGRTIAEWESALQ-------RLERDPENEILD-VLQISFDGLKETEKKIFLDIACFYK 343
F A + LQ R + E LD + IS + L+E K + D++ K
Sbjct: 339 RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQK 398
Query: 344 GKYIDYVTKIL 354
+ TK+L
Sbjct: 399 D--VKVPTKVL 407
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,623,892
Number of Sequences: 62578
Number of extensions: 424288
Number of successful extensions: 1096
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1091
Number of HSP's gapped (non-prelim): 13
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)