Query 017317
Match_columns 373
No_of_seqs 242 out of 2293
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 07:30:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 100.0 5.1E-47 1.1E-51 336.4 30.4 320 50-371 38-376 (376)
2 PF08450 SGL: SMP-30/Gluconola 100.0 1.5E-26 3.2E-31 205.5 28.4 231 79-360 2-245 (246)
3 COG3386 Gluconolactonase [Carb 100.0 4E-26 8.8E-31 205.2 29.9 253 60-364 15-279 (307)
4 COG4257 Vgb Streptogramin lyas 99.9 5E-19 1.1E-23 150.0 23.6 237 76-372 61-306 (353)
5 PLN02919 haloacid dehalogenase 99.8 7.1E-17 1.5E-21 168.4 31.6 246 75-372 566-889 (1057)
6 PF03088 Str_synth: Strictosid 99.8 1.6E-19 3.6E-24 130.4 8.3 88 163-250 1-89 (89)
7 COG4257 Vgb Streptogramin lyas 99.7 1.7E-15 3.6E-20 128.8 24.1 244 64-370 91-346 (353)
8 PLN02919 haloacid dehalogenase 99.6 1.3E-13 2.9E-18 144.0 25.7 190 76-284 623-879 (1057)
9 TIGR02604 Piru_Ver_Nterm putat 99.6 8.6E-14 1.9E-18 130.5 22.0 174 68-245 4-210 (367)
10 KOG4499 Ca2+-binding protein R 99.5 5.7E-12 1.2E-16 105.1 22.4 226 87-360 27-274 (310)
11 PF08450 SGL: SMP-30/Gluconola 99.5 1.5E-12 3.4E-17 115.5 18.5 177 77-282 40-245 (246)
12 PF10282 Lactonase: Lactonase, 99.5 1.2E-10 2.7E-15 108.4 30.3 243 76-371 36-322 (345)
13 PRK11028 6-phosphogluconolacto 99.5 2E-10 4.4E-15 106.5 30.5 239 77-371 35-304 (330)
14 COG2706 3-carboxymuconate cycl 99.4 2.1E-09 4.5E-14 95.4 29.5 243 76-372 39-322 (346)
15 PF07995 GSDH: Glucose / Sorbo 99.4 3.3E-11 7.1E-16 111.3 18.3 159 76-239 1-202 (331)
16 TIGR03606 non_repeat_PQQ dehyd 99.4 2.9E-09 6.4E-14 100.5 31.6 171 67-240 21-251 (454)
17 PF10282 Lactonase: Lactonase, 99.3 8.2E-09 1.8E-13 96.2 31.3 229 90-371 2-275 (345)
18 PRK11028 6-phosphogluconolacto 99.3 1.9E-08 4.2E-13 93.2 29.8 173 89-282 3-194 (330)
19 COG2133 Glucose/sorbosone dehy 99.3 1.4E-08 2.9E-13 93.9 27.8 171 67-242 58-263 (399)
20 COG2706 3-carboxymuconate cycl 99.2 1.7E-08 3.6E-13 89.7 26.7 189 77-283 89-310 (346)
21 COG3292 Predicted periplasmic 99.2 1.1E-09 2.3E-14 102.4 16.8 141 80-246 168-315 (671)
22 TIGR02604 Piru_Ver_Nterm putat 99.2 6.6E-09 1.4E-13 97.6 21.5 208 66-284 62-341 (367)
23 TIGR03866 PQQ_ABC_repeats PQQ- 99.2 2E-07 4.4E-12 84.5 30.7 234 77-372 31-280 (300)
24 COG3386 Gluconolactonase [Carb 99.2 4.9E-09 1.1E-13 94.8 19.1 146 76-240 110-278 (307)
25 PF03022 MRJP: Major royal jel 99.1 4E-08 8.7E-13 88.6 21.6 187 121-361 5-255 (287)
26 COG3292 Predicted periplasmic 99.1 1.9E-09 4.1E-14 100.8 12.2 219 121-372 169-405 (671)
27 KOG4659 Uncharacterized conser 99.0 1.6E-07 3.4E-12 95.1 25.1 183 78-284 408-682 (1899)
28 COG3391 Uncharacterized conser 99.0 6.2E-07 1.3E-11 84.6 27.7 187 77-284 31-228 (381)
29 KOG4659 Uncharacterized conser 99.0 1.9E-07 4.1E-12 94.6 24.4 182 76-285 364-614 (1899)
30 TIGR03866 PQQ_ABC_repeats PQQ- 99.0 2.9E-06 6.3E-11 76.8 29.9 167 88-281 1-175 (300)
31 COG3391 Uncharacterized conser 98.9 8.3E-07 1.8E-11 83.8 22.6 184 76-283 73-273 (381)
32 TIGR02658 TTQ_MADH_Hv methylam 98.8 1.7E-05 3.7E-10 73.1 28.6 247 88-371 13-330 (352)
33 KOG0291 WD40-repeat-containing 98.8 5.1E-06 1.1E-10 80.4 25.6 187 74-285 348-543 (893)
34 PF06977 SdiA-regulated: SdiA- 98.8 1.9E-06 4.1E-11 75.5 20.8 193 74-284 19-242 (248)
35 PF02239 Cytochrom_D1: Cytochr 98.7 4.5E-06 9.7E-11 78.2 22.5 154 79-249 39-203 (369)
36 KOG1520 Predicted alkaloid syn 98.7 2.4E-06 5.2E-11 77.5 19.5 180 70-296 47-251 (376)
37 TIGR03300 assembly_YfgL outer 98.7 9.4E-05 2E-09 69.9 30.5 140 82-249 61-209 (377)
38 COG3204 Uncharacterized protei 98.6 7.6E-05 1.6E-09 65.4 24.4 194 73-284 82-304 (316)
39 cd00200 WD40 WD40 domain, foun 98.6 0.00013 2.9E-09 64.4 27.0 176 80-282 55-238 (289)
40 cd00200 WD40 WD40 domain, foun 98.5 0.00029 6.3E-09 62.2 28.2 180 78-284 11-199 (289)
41 PF02239 Cytochrom_D1: Cytochr 98.5 0.00014 3E-09 68.3 25.7 168 90-282 8-190 (369)
42 KOG1214 Nidogen and related ba 98.5 2E-05 4.4E-10 77.1 19.5 214 95-371 997-1226(1289)
43 PF03022 MRJP: Major royal jel 98.5 1.9E-05 4.2E-10 71.3 18.5 186 79-283 3-255 (287)
44 PRK04792 tolB translocation pr 98.5 0.00013 2.9E-09 70.4 25.4 176 81-282 222-412 (448)
45 PRK11138 outer membrane biogen 98.5 0.001 2.2E-08 63.3 30.6 140 83-250 66-225 (394)
46 TIGR03606 non_repeat_PQQ dehyd 98.4 4.3E-05 9.3E-10 72.7 20.2 178 159-362 29-250 (454)
47 KOG2055 WD40 repeat protein [G 98.4 8.5E-05 1.8E-09 68.3 20.7 183 79-283 216-406 (514)
48 PF06977 SdiA-regulated: SdiA- 98.4 0.00012 2.5E-09 64.4 20.4 196 117-369 23-248 (248)
49 PRK05137 tolB translocation pr 98.4 0.00074 1.6E-08 65.1 27.5 156 98-278 183-348 (435)
50 PRK11138 outer membrane biogen 98.3 0.00017 3.6E-09 68.7 21.8 221 82-371 116-353 (394)
51 TIGR03300 assembly_YfgL outer 98.3 0.00033 7.2E-09 66.2 23.7 219 82-371 101-338 (377)
52 PRK04922 tolB translocation pr 98.3 0.00052 1.1E-08 66.1 25.2 200 82-339 209-423 (433)
53 KOG4499 Ca2+-binding protein R 98.3 8.7E-06 1.9E-10 68.7 11.0 111 83-211 115-246 (310)
54 PF01731 Arylesterase: Arylest 98.3 7.1E-06 1.5E-10 59.1 9.1 81 164-248 2-84 (86)
55 PF13360 PQQ_2: PQQ-like domai 98.3 0.0012 2.6E-08 57.8 25.3 174 83-284 32-222 (238)
56 PRK00178 tolB translocation pr 98.3 0.00092 2E-08 64.4 25.8 173 80-278 202-388 (430)
57 PF07995 GSDH: Glucose / Sorbo 98.3 1.5E-05 3.3E-10 73.7 12.9 161 160-364 2-204 (331)
58 PRK05137 tolB translocation pr 98.3 0.00088 1.9E-08 64.6 25.5 172 80-277 205-390 (435)
59 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.0016 3.4E-08 60.3 25.5 178 78-283 106-319 (352)
60 KOG1446 Histone H3 (Lys4) meth 98.2 0.0028 6.1E-08 55.8 27.3 234 77-371 15-262 (311)
61 KOG2106 Uncharacterized conser 98.2 0.00056 1.2E-08 63.8 22.2 178 80-285 250-429 (626)
62 KOG1214 Nidogen and related ba 98.2 5.9E-05 1.3E-09 74.0 16.6 179 79-284 1027-1217(1289)
63 PRK03629 tolB translocation pr 98.2 0.0012 2.7E-08 63.4 25.9 174 81-280 203-390 (429)
64 PRK02889 tolB translocation pr 98.2 0.0014 3.1E-08 63.0 26.3 201 81-339 200-415 (427)
65 KOG0315 G-protein beta subunit 98.2 0.00071 1.5E-08 57.8 20.0 181 77-282 84-277 (311)
66 PRK04792 tolB translocation pr 98.2 0.0031 6.7E-08 61.0 27.4 134 121-278 222-364 (448)
67 PRK03629 tolB translocation pr 98.2 0.0029 6.2E-08 60.9 27.0 157 98-279 180-346 (429)
68 PRK04043 tolB translocation pr 98.2 0.0023 5.1E-08 61.2 25.9 198 83-340 194-413 (419)
69 PF05096 Glu_cyclase_2: Glutam 98.1 0.00091 2E-08 58.6 20.1 156 160-372 45-204 (264)
70 PF13360 PQQ_2: PQQ-like domai 98.1 0.0027 5.9E-08 55.5 23.8 210 96-372 2-231 (238)
71 KOG0318 WD40 repeat stress pro 98.1 0.0066 1.4E-07 57.2 26.4 188 70-285 314-509 (603)
72 PF05096 Glu_cyclase_2: Glutam 98.1 0.00085 1.8E-08 58.8 19.6 148 79-247 92-260 (264)
73 PRK02889 tolB translocation pr 98.1 0.006 1.3E-07 58.7 27.7 155 98-277 177-341 (427)
74 PRK04922 tolB translocation pr 98.1 0.0027 6E-08 61.2 25.4 134 121-278 208-350 (433)
75 PRK04043 tolB translocation pr 98.1 0.0057 1.2E-07 58.5 27.1 156 98-280 170-335 (419)
76 TIGR03118 PEPCTERM_chp_1 conse 98.1 0.002 4.3E-08 57.1 21.6 125 221-371 141-279 (336)
77 KOG1446 Histone H3 (Lys4) meth 98.1 0.0027 5.9E-08 56.0 22.0 157 70-249 94-263 (311)
78 PRK01742 tolB translocation pr 98.0 0.0035 7.5E-08 60.4 24.5 172 80-282 207-390 (429)
79 TIGR03032 conserved hypothetic 98.0 0.0014 3E-08 58.5 19.6 192 75-285 47-263 (335)
80 KOG0318 WD40 repeat stress pro 98.0 0.012 2.6E-07 55.5 25.3 184 79-284 193-427 (603)
81 PRK00178 tolB translocation pr 98.0 0.015 3.2E-07 56.0 27.5 133 121-277 203-344 (430)
82 KOG0266 WD40 repeat-containing 97.9 0.009 1.9E-07 58.0 25.4 181 79-283 162-355 (456)
83 TIGR02800 propeller_TolB tol-p 97.9 0.014 3.1E-07 55.8 26.6 175 82-282 195-384 (417)
84 TIGR02800 propeller_TolB tol-p 97.9 0.028 6.1E-07 53.8 27.7 159 98-281 171-339 (417)
85 PF07433 DUF1513: Protein of u 97.8 0.007 1.5E-07 54.3 20.9 155 82-249 56-248 (305)
86 KOG0279 G protein beta subunit 97.8 0.017 3.7E-07 50.3 25.0 219 89-372 30-263 (315)
87 PRK02888 nitrous-oxide reducta 97.8 0.0035 7.5E-08 61.4 20.1 170 85-283 201-394 (635)
88 KOG0315 G-protein beta subunit 97.8 0.018 3.9E-07 49.4 22.4 177 82-283 46-235 (311)
89 cd00216 PQQ_DH Dehydrogenases 97.8 0.043 9.4E-07 53.8 27.6 255 87-371 110-424 (488)
90 KOG0286 G-protein beta subunit 97.8 0.012 2.7E-07 51.5 20.6 172 80-279 149-331 (343)
91 PRK01742 tolB translocation pr 97.8 0.02 4.4E-07 55.1 24.8 153 98-278 185-347 (429)
92 KOG2106 Uncharacterized conser 97.8 0.0075 1.6E-07 56.6 20.1 149 76-250 329-479 (626)
93 KOG0266 WD40 repeat-containing 97.8 0.019 4.1E-07 55.8 24.2 151 74-248 201-364 (456)
94 PRK13684 Ycf48-like protein; P 97.7 0.023 4.9E-07 52.7 23.6 224 81-370 94-330 (334)
95 KOG1273 WD40 repeat protein [G 97.7 0.02 4.3E-07 50.8 21.3 68 79-146 26-97 (405)
96 PRK13684 Ycf48-like protein; P 97.7 0.038 8.2E-07 51.3 29.8 178 79-284 48-235 (334)
97 KOG0289 mRNA splicing factor [ 97.7 0.031 6.7E-07 51.6 23.0 187 121-368 308-502 (506)
98 cd00216 PQQ_DH Dehydrogenases 97.7 0.02 4.3E-07 56.1 23.9 114 87-212 61-189 (488)
99 PF05787 DUF839: Bacterial pro 97.7 0.0028 6.1E-08 62.0 17.7 124 157-281 347-520 (524)
100 KOG0294 WD40 repeat-containing 97.7 0.027 5.8E-07 50.0 21.5 176 79-283 46-228 (362)
101 PRK01029 tolB translocation pr 97.7 0.057 1.2E-06 51.9 26.3 174 83-280 191-388 (428)
102 COG1520 FOG: WD40-like repeat 97.7 0.02 4.4E-07 53.9 22.8 141 84-248 65-217 (370)
103 PTZ00421 coronin; Provisional 97.6 0.084 1.8E-06 51.6 28.6 148 78-248 77-245 (493)
104 KOG0278 Serine/threonine kinas 97.6 0.011 2.5E-07 50.7 17.0 140 85-246 153-295 (334)
105 COG3490 Uncharacterized protei 97.6 0.027 5.9E-07 49.5 19.3 230 84-343 43-316 (366)
106 PF01436 NHL: NHL repeat; Int 97.5 0.00018 4E-09 40.0 3.8 28 217-245 1-28 (28)
107 KOG2139 WD40 repeat protein [G 97.5 0.059 1.3E-06 48.8 21.2 150 115-286 194-368 (445)
108 COG2133 Glucose/sorbosone dehy 97.5 0.011 2.5E-07 55.1 17.3 66 219-284 315-387 (399)
109 PF07433 DUF1513: Protein of u 97.4 0.081 1.8E-06 47.6 22.3 108 115-237 4-118 (305)
110 PTZ00421 coronin; Provisional 97.4 0.14 3E-06 50.2 26.1 113 116-249 76-199 (493)
111 PLN00033 photosystem II stabil 97.4 0.13 2.7E-06 48.8 25.1 228 82-368 142-396 (398)
112 TIGR03032 conserved hypothetic 97.4 0.077 1.7E-06 47.6 20.6 160 95-284 26-222 (335)
113 PF14870 PSII_BNR: Photosynthe 97.3 0.11 2.4E-06 47.1 24.7 178 78-284 18-207 (302)
114 PF13449 Phytase-like: Esteras 97.3 0.03 6.6E-07 51.7 18.3 159 76-238 19-234 (326)
115 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.3 0.12 2.6E-06 51.1 23.1 109 87-211 69-194 (527)
116 KOG0272 U4/U6 small nuclear ri 97.3 0.044 9.6E-07 50.4 18.0 180 76-281 217-405 (459)
117 KOG0278 Serine/threonine kinas 97.3 0.0084 1.8E-07 51.4 12.6 131 125-282 153-286 (334)
118 KOG1274 WD40 repeat protein [G 97.3 0.14 3E-06 51.8 22.8 150 77-251 14-171 (933)
119 PF08662 eIF2A: Eukaryotic tra 97.3 0.043 9.3E-07 46.6 17.3 130 98-250 40-181 (194)
120 KOG2055 WD40 repeat protein [G 97.3 0.0082 1.8E-07 55.7 13.4 184 80-287 307-507 (514)
121 KOG1274 WD40 repeat protein [G 97.2 0.038 8.1E-07 55.6 18.6 175 82-281 62-250 (933)
122 PF13449 Phytase-like: Esteras 97.2 0.023 4.9E-07 52.6 16.3 111 161-283 86-234 (326)
123 COG4946 Uncharacterized protei 97.1 0.019 4.1E-07 53.7 14.3 130 90-237 374-508 (668)
124 COG4946 Uncharacterized protei 97.1 0.22 4.7E-06 46.9 21.1 78 199-281 383-460 (668)
125 KOG0291 WD40-repeat-containing 97.1 0.36 7.8E-06 48.0 25.8 103 160-282 351-454 (893)
126 KOG4649 PQQ (pyrrolo-quinoline 97.1 0.18 3.8E-06 43.9 21.7 145 79-248 15-165 (354)
127 KOG0282 mRNA splicing factor [ 97.1 0.015 3.3E-07 54.2 13.2 179 80-282 262-451 (503)
128 PLN00181 protein SPA1-RELATED; 97.1 0.53 1.2E-05 49.2 29.4 147 79-249 486-649 (793)
129 COG3211 PhoX Predicted phospha 97.0 0.066 1.4E-06 51.6 17.6 126 157-284 414-575 (616)
130 KOG0289 mRNA splicing factor [ 97.0 0.024 5.2E-07 52.3 13.9 143 79-245 350-502 (506)
131 KOG0286 G-protein beta subunit 97.0 0.21 4.5E-06 44.1 26.0 189 70-282 49-248 (343)
132 COG1520 FOG: WD40-like repeat 97.0 0.32 6.9E-06 45.8 24.2 107 87-211 111-222 (370)
133 PF08662 eIF2A: Eukaryotic tra 97.0 0.11 2.5E-06 44.0 17.3 128 126-282 30-162 (194)
134 KOG0271 Notchless-like WD40 re 97.0 0.047 1E-06 49.7 15.2 189 67-282 238-470 (480)
135 smart00135 LY Low-density lipo 97.0 0.0036 7.8E-08 38.5 6.1 38 213-250 4-41 (43)
136 PF05787 DUF839: Bacterial pro 97.0 0.019 4.2E-07 56.2 14.0 78 157-235 433-519 (524)
137 PF14870 PSII_BNR: Photosynthe 97.0 0.28 6.1E-06 44.6 22.9 220 82-368 67-301 (302)
138 PRK01029 tolB translocation pr 97.0 0.4 8.6E-06 46.2 28.3 157 98-277 166-340 (428)
139 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.23 5.1E-06 43.2 24.0 104 87-212 63-171 (354)
140 COG3204 Uncharacterized protei 96.8 0.33 7.1E-06 43.2 20.6 192 118-368 88-309 (316)
141 KOG0263 Transcription initiati 96.8 0.16 3.5E-06 50.3 18.4 141 117-281 452-595 (707)
142 PTZ00420 coronin; Provisional 96.8 0.18 3.9E-06 50.0 19.1 159 78-250 127-295 (568)
143 KOG1539 WD repeat protein [Gen 96.8 0.099 2.1E-06 52.3 16.9 149 79-246 451-646 (910)
144 KOG0273 Beta-transducin family 96.8 0.47 1E-05 44.6 23.4 73 78-150 237-313 (524)
145 KOG0639 Transducin-like enhanc 96.8 0.059 1.3E-06 50.8 14.5 107 160-291 466-580 (705)
146 KOG0282 mRNA splicing factor [ 96.7 0.047 1E-06 51.1 13.6 145 79-247 217-371 (503)
147 KOG2048 WD40 repeat protein [G 96.7 0.29 6.2E-06 47.9 19.0 157 77-251 383-551 (691)
148 KOG0285 Pleiotropic regulator 96.7 0.46 1E-05 43.2 19.1 155 70-249 145-308 (460)
149 KOG0283 WD40 repeat-containing 96.7 0.061 1.3E-06 53.4 14.8 151 79-250 412-578 (712)
150 KOG0279 G protein beta subunit 96.7 0.38 8.3E-06 42.2 24.0 189 69-283 56-252 (315)
151 PTZ00420 coronin; Provisional 96.7 0.82 1.8E-05 45.5 27.5 150 76-248 74-248 (568)
152 PF01436 NHL: NHL repeat; Int 96.6 0.0045 9.7E-08 34.4 4.0 27 76-102 1-28 (28)
153 KOG0640 mRNA cleavage stimulat 96.6 0.028 6E-07 49.8 10.8 100 161-283 174-281 (430)
154 KOG0263 Transcription initiati 96.6 0.11 2.4E-06 51.4 15.9 177 82-285 457-641 (707)
155 PF14517 Tachylectin: Tachylec 96.6 0.12 2.5E-06 44.5 14.1 159 65-246 23-204 (229)
156 KOG0316 Conserved WD40 repeat- 96.5 0.43 9.3E-06 40.9 17.7 172 81-284 22-205 (307)
157 KOG0275 Conserved WD40 repeat- 96.5 0.16 3.5E-06 45.3 14.8 151 74-248 211-378 (508)
158 COG3823 Glutamine cyclotransfe 96.5 0.14 3.1E-06 43.0 13.6 102 116-237 131-248 (262)
159 PF05694 SBP56: 56kDa selenium 96.5 0.67 1.5E-05 43.7 19.3 63 220-282 314-393 (461)
160 KOG0293 WD40 repeat-containing 96.4 0.72 1.6E-05 42.7 18.7 233 80-339 228-483 (519)
161 KOG0319 WD40-repeat-containing 96.4 0.43 9.3E-06 47.2 18.3 182 82-284 111-303 (775)
162 KOG2048 WD40 repeat protein [G 96.4 1.1 2.5E-05 43.9 21.2 147 79-248 28-184 (691)
163 KOG0772 Uncharacterized conser 96.3 0.85 1.8E-05 43.5 19.1 184 79-282 217-428 (641)
164 KOG0275 Conserved WD40 repeat- 96.3 0.086 1.9E-06 47.0 12.1 106 121-250 311-425 (508)
165 KOG0646 WD40 repeat protein [G 96.3 0.55 1.2E-05 44.0 17.6 208 115-370 81-306 (476)
166 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.3 1.3 2.9E-05 43.8 29.7 161 82-248 116-333 (527)
167 PF03088 Str_synth: Strictosid 96.3 0.046 1E-06 39.7 8.6 85 267-372 1-88 (89)
168 PF14517 Tachylectin: Tachylec 96.3 0.03 6.5E-07 48.1 8.7 124 65-207 69-207 (229)
169 PF14583 Pectate_lyase22: Olig 96.2 1.1 2.4E-05 41.8 20.6 163 85-250 44-226 (386)
170 KOG0272 U4/U6 small nuclear ri 96.1 0.19 4.2E-06 46.4 13.2 106 121-246 308-416 (459)
171 PLN00181 protein SPA1-RELATED; 96.0 2.5 5.4E-05 44.2 29.6 176 80-282 536-727 (793)
172 KOG4378 Nuclear protein COP1 [ 96.0 0.56 1.2E-05 44.4 15.9 83 197-283 186-270 (673)
173 KOG1273 WD40 repeat protein [G 96.0 0.4 8.8E-06 42.8 14.2 71 162-250 26-97 (405)
174 PLN00033 photosystem II stabil 96.0 1.6 3.4E-05 41.5 30.9 59 222-284 243-301 (398)
175 KOG0265 U5 snRNP-specific prot 95.9 1.2 2.7E-05 39.5 21.5 162 81-249 52-247 (338)
176 KOG2139 WD40 repeat protein [G 95.7 1.3 2.9E-05 40.4 16.8 104 159-282 195-300 (445)
177 KOG0772 Uncharacterized conser 95.7 0.62 1.3E-05 44.4 15.0 189 78-282 169-383 (641)
178 COG0823 TolB Periplasmic compo 95.7 2.1 4.6E-05 41.0 19.9 129 99-248 220-358 (425)
179 PF06433 Me-amine-dh_H: Methyl 95.6 0.99 2.2E-05 41.3 15.9 99 171-284 3-116 (342)
180 KOG0640 mRNA cleavage stimulat 95.5 0.14 3.1E-06 45.5 9.9 145 81-246 177-332 (430)
181 KOG0319 WD40-repeat-containing 95.5 2.6 5.5E-05 42.1 19.2 175 82-280 25-209 (775)
182 COG3211 PhoX Predicted phospha 95.5 0.17 3.8E-06 48.8 11.2 72 159-236 499-572 (616)
183 KOG0293 WD40 repeat-containing 95.5 1.3 2.8E-05 41.1 15.9 140 121-283 229-375 (519)
184 PF14583 Pectate_lyase22: Olig 95.5 1.3 2.9E-05 41.3 16.3 142 166-338 42-188 (386)
185 PF02333 Phytase: Phytase; In 95.5 1.9 4.2E-05 40.3 17.6 145 86-250 66-239 (381)
186 PRK13616 lipoprotein LpqB; Pro 95.4 3.3 7.1E-05 41.6 22.8 224 89-368 322-564 (591)
187 KOG0299 U3 snoRNP-associated p 95.4 1.1 2.4E-05 42.1 15.5 200 80-282 206-445 (479)
188 KOG0271 Notchless-like WD40 re 95.4 0.25 5.4E-06 45.2 11.1 134 88-246 337-478 (480)
189 KOG0771 Prolactin regulatory e 95.4 0.61 1.3E-05 43.1 13.6 181 80-280 148-341 (398)
190 PF14269 Arylsulfotran_2: Aryl 95.3 2.2 4.8E-05 38.8 23.2 38 161-215 145-182 (299)
191 PRK13616 lipoprotein LpqB; Pro 95.2 4 8.7E-05 41.0 22.1 153 77-251 350-530 (591)
192 PRK02888 nitrous-oxide reducta 95.1 1.7 3.7E-05 43.2 16.8 67 108-177 313-392 (635)
193 PF06433 Me-amine-dh_H: Methyl 95.1 2.8 6E-05 38.5 18.5 166 76-249 134-321 (342)
194 KOG0288 WD40 repeat protein Ti 95.0 0.89 1.9E-05 42.1 13.5 125 95-237 320-451 (459)
195 PF07494 Reg_prop: Two compone 95.0 0.025 5.5E-07 30.0 2.3 17 266-282 7-23 (24)
196 KOG0303 Actin-binding protein 95.0 1.2 2.6E-05 41.1 14.1 142 92-250 149-296 (472)
197 KOG4328 WD40 protein [Function 94.9 3.4 7.4E-05 38.9 17.4 27 220-247 372-398 (498)
198 PF07494 Reg_prop: Two compone 94.8 0.048 1.1E-06 28.9 3.1 21 158-178 3-23 (24)
199 KOG0284 Polyadenylation factor 94.7 0.47 1E-05 43.8 10.9 172 82-281 102-282 (464)
200 COG3490 Uncharacterized protei 94.7 0.15 3.2E-06 45.1 7.4 119 224-360 120-244 (366)
201 KOG0301 Phospholipase A2-activ 94.6 5.4 0.00012 39.6 18.6 206 87-362 71-280 (745)
202 KOG0639 Transducin-like enhanc 94.6 1.2 2.6E-05 42.4 13.5 136 121-283 514-653 (705)
203 KOG0973 Histone transcription 94.5 1 2.3E-05 46.4 14.0 143 76-241 69-243 (942)
204 KOG0296 Angio-associated migra 94.5 3.8 8.3E-05 37.5 21.8 146 80-248 68-220 (399)
205 KOG1539 WD repeat protein [Gen 94.3 6.9 0.00015 39.8 19.3 143 116-281 449-594 (910)
206 PF02333 Phytase: Phytase; In 94.3 1.6 3.4E-05 40.9 13.6 100 79-179 158-280 (381)
207 KOG0283 WD40 repeat-containing 94.3 4.1 8.9E-05 41.0 17.1 146 121-290 374-530 (712)
208 KOG0643 Translation initiation 94.1 3.1 6.7E-05 36.6 13.9 151 77-248 53-220 (327)
209 KOG0268 Sof1-like rRNA process 94.0 2.9 6.3E-05 38.3 14.2 176 77-283 67-249 (433)
210 KOG0645 WD40 repeat protein [G 94.0 4 8.7E-05 35.9 21.8 155 74-248 12-180 (312)
211 PF08553 VID27: VID27 cytoplas 93.7 3.2 6.9E-05 42.8 15.6 132 95-246 502-645 (794)
212 KOG1407 WD40 repeat protein [F 93.5 4.8 0.0001 35.3 19.3 178 78-282 66-250 (313)
213 KOG1407 WD40 repeat protein [F 93.5 4.9 0.00011 35.3 21.1 214 76-334 20-249 (313)
214 KOG0285 Pleiotropic regulator 93.5 2.6 5.5E-05 38.6 12.9 140 82-246 283-437 (460)
215 PHA02713 hypothetical protein; 93.5 4.4 9.6E-05 40.5 16.3 155 87-248 303-488 (557)
216 KOG0310 Conserved WD40 repeat- 93.3 6.5 0.00014 37.3 15.7 140 78-237 155-299 (487)
217 KOG4441 Proteins containing BT 93.2 9 0.00019 38.4 17.9 143 87-248 332-499 (571)
218 PHA02713 hypothetical protein; 93.1 10 0.00022 37.9 21.5 119 98-237 273-406 (557)
219 KOG0646 WD40 repeat protein [G 93.1 8.1 0.00018 36.5 18.0 190 80-290 85-305 (476)
220 COG0823 TolB Periplasmic compo 93.0 3.1 6.7E-05 40.0 13.8 75 198-276 218-294 (425)
221 KOG1272 WD40-repeat-containing 93.0 2.8 6E-05 39.6 12.8 32 77-108 130-163 (545)
222 KOG0973 Histone transcription 93.0 2.7 5.8E-05 43.6 13.8 98 79-177 132-237 (942)
223 KOG0310 Conserved WD40 repeat- 93.0 8.5 0.00018 36.6 19.9 144 121-291 73-224 (487)
224 TIGR02276 beta_rpt_yvtn 40-res 93.0 0.56 1.2E-05 28.3 5.9 40 170-226 2-42 (42)
225 KOG1538 Uncharacterized conser 92.9 1.9 4.1E-05 42.6 12.0 65 159-243 12-78 (1081)
226 COG3823 Glutamine cyclotransfe 92.8 4.2 9.1E-05 34.5 12.3 150 162-372 48-205 (262)
227 KOG0296 Angio-associated migra 92.7 7.9 0.00017 35.5 23.4 68 79-146 151-222 (399)
228 KOG2315 Predicted translation 92.7 6.4 0.00014 38.1 15.0 132 98-250 252-392 (566)
229 KOG0313 Microtubule binding pr 92.5 8.8 0.00019 35.4 15.1 153 74-249 191-377 (423)
230 PF00058 Ldl_recept_b: Low-den 92.4 0.49 1.1E-05 28.9 5.1 40 231-273 2-42 (42)
231 KOG2321 WD40 repeat protein [G 92.4 6.2 0.00013 38.4 14.4 113 82-213 139-265 (703)
232 TIGR03118 PEPCTERM_chp_1 conse 92.2 8.5 0.00018 34.7 23.5 31 74-104 20-51 (336)
233 KOG1445 Tumor-specific antigen 92.1 2.3 4.9E-05 41.8 11.3 145 80-247 631-797 (1012)
234 KOG1036 Mitotic spindle checkp 92.0 8.8 0.00019 34.4 13.9 134 121-284 18-155 (323)
235 PF00058 Ldl_recept_b: Low-den 91.9 0.9 1.9E-05 27.8 5.8 40 171-227 1-42 (42)
236 TIGR03074 PQQ_membr_DH membran 91.8 18 0.00039 37.6 19.0 123 87-213 260-429 (764)
237 KOG4378 Nuclear protein COP1 [ 91.8 10 0.00022 36.4 14.9 72 162-251 211-283 (673)
238 KOG1538 Uncharacterized conser 91.6 16 0.00035 36.5 21.3 55 78-133 14-70 (1081)
239 KOG1445 Tumor-specific antigen 91.6 3.4 7.3E-05 40.7 11.8 119 115-248 720-844 (1012)
240 KOG0645 WD40 repeat protein [G 91.5 9.3 0.0002 33.7 18.3 148 70-235 55-213 (312)
241 KOG2919 Guanine nucleotide-bin 91.4 6.1 0.00013 35.7 12.5 149 83-248 118-281 (406)
242 KOG2096 WD40 repeat protein [G 91.3 11 0.00024 34.1 16.2 61 218-283 332-393 (420)
243 KOG0650 WD40 repeat nucleolar 91.2 16 0.00035 35.9 20.5 94 197-295 545-640 (733)
244 TIGR03074 PQQ_membr_DH membran 91.2 21 0.00045 37.1 22.9 59 87-146 194-280 (764)
245 TIGR02276 beta_rpt_yvtn 40-res 91.0 1.5 3.3E-05 26.3 6.3 42 227-272 1-42 (42)
246 KOG0299 U3 snoRNP-associated p 91.0 12 0.00025 35.5 14.3 72 161-247 382-455 (479)
247 KOG1036 Mitotic spindle checkp 90.8 12 0.00026 33.6 22.3 180 80-286 17-201 (323)
248 PF00930 DPPIV_N: Dipeptidyl p 90.7 14 0.00031 34.4 16.7 83 197-284 259-348 (353)
249 KOG2110 Uncharacterized conser 90.7 14 0.0003 34.1 15.0 136 198-372 106-249 (391)
250 KOG0306 WD40-repeat-containing 90.5 21 0.00046 36.1 19.4 66 162-245 511-577 (888)
251 KOG0281 Beta-TrCP (transducin 90.5 1.7 3.6E-05 39.5 8.2 90 198-293 340-429 (499)
252 KOG0641 WD40 repeat protein [G 90.2 11 0.00024 32.3 15.2 19 161-179 34-52 (350)
253 KOG1963 WD40 repeat protein [G 90.1 24 0.00052 36.1 20.8 145 80-249 209-376 (792)
254 KOG0292 Vesicle coat complex C 90.0 26 0.00057 36.3 20.6 148 79-251 12-168 (1202)
255 KOG0268 Sof1-like rRNA process 90.0 3.8 8.2E-05 37.6 10.0 143 80-248 113-259 (433)
256 PHA03098 kelch-like protein; P 90.0 21 0.00047 35.3 19.6 145 87-249 294-465 (534)
257 KOG2110 Uncharacterized conser 89.9 16 0.00034 33.7 22.9 86 196-284 151-239 (391)
258 KOG0308 Conserved WD40 repeat- 89.6 23 0.00051 35.2 16.7 165 87-281 36-231 (735)
259 KOG1963 WD40 repeat protein [G 89.4 27 0.00059 35.7 20.5 144 79-247 163-321 (792)
260 PHA02790 Kelch-like protein; P 89.4 23 0.00049 34.7 19.4 166 87-281 271-453 (480)
261 PF05935 Arylsulfotrans: Aryls 89.3 23 0.0005 34.7 16.8 147 96-249 127-302 (477)
262 PF10647 Gmad1: Lipoprotein Lp 89.2 15 0.00033 32.5 20.2 152 78-249 25-198 (253)
263 KOG0301 Phospholipase A2-activ 89.0 27 0.00058 35.0 16.4 140 81-249 106-249 (745)
264 KOG1517 Guanine nucleotide bin 88.6 37 0.0008 36.1 20.0 228 90-372 1126-1382(1387)
265 PRK14131 N-acetylneuraminic ac 88.6 22 0.00048 33.5 16.1 39 198-236 189-228 (376)
266 PF05935 Arylsulfotrans: Aryls 88.3 27 0.00058 34.2 23.9 114 82-214 153-309 (477)
267 KOG0306 WD40-repeat-containing 87.9 21 0.00045 36.2 14.2 146 79-247 511-663 (888)
268 KOG2321 WD40 repeat protein [G 87.7 5.2 0.00011 38.9 9.8 146 82-248 181-343 (703)
269 PF02897 Peptidase_S9_N: Proly 87.5 27 0.00058 33.3 20.0 85 198-284 150-248 (414)
270 KOG0264 Nucleosome remodeling 86.6 21 0.00045 33.7 12.8 141 87-248 190-347 (422)
271 KOG0643 Translation initiation 86.6 22 0.00048 31.4 18.7 179 82-283 16-210 (327)
272 KOG4441 Proteins containing BT 86.0 40 0.00088 33.8 19.6 134 98-248 302-452 (571)
273 KOG0281 Beta-TrCP (transducin 85.9 6.8 0.00015 35.8 9.0 171 77-282 198-377 (499)
274 PF01731 Arylesterase: Arylest 85.1 3.1 6.7E-05 30.0 5.5 48 93-142 32-81 (86)
275 KOG1408 WD40 repeat protein [F 85.1 32 0.00069 34.8 13.8 102 159-280 596-710 (1080)
276 smart00135 LY Low-density lipo 84.9 2.9 6.3E-05 25.0 4.7 32 75-106 7-40 (43)
277 KOG3914 WD repeat protein WDR4 84.7 11 0.00025 34.9 10.1 104 121-246 67-179 (390)
278 KOG0295 WD40 repeat-containing 84.6 33 0.00072 31.7 13.9 54 196-250 312-366 (406)
279 KOG2919 Guanine nucleotide-bin 84.3 33 0.00071 31.3 17.7 133 199-371 134-281 (406)
280 KOG2096 WD40 repeat protein [G 84.2 32 0.0007 31.2 20.5 144 79-239 89-250 (420)
281 KOG0771 Prolactin regulatory e 84.2 37 0.00079 31.8 13.4 56 121-179 149-206 (398)
282 KOG1524 WD40 repeat-containing 83.5 47 0.001 32.5 16.1 82 90-177 78-164 (737)
283 KOG0265 U5 snRNP-specific prot 83.5 27 0.00058 31.4 11.5 109 121-248 52-163 (338)
284 KOG3914 WD repeat protein WDR4 83.0 40 0.00087 31.4 12.8 147 79-249 65-224 (390)
285 PF06739 SBBP: Beta-propeller 83.0 1.1 2.5E-05 26.7 2.1 18 161-178 14-31 (38)
286 KOG0273 Beta-transducin family 83.0 45 0.00098 31.9 20.8 138 118-283 238-379 (524)
287 KOG0292 Vesicle coat complex C 82.9 65 0.0014 33.7 21.3 68 75-143 249-319 (1202)
288 PHA02790 Kelch-like protein; P 82.7 50 0.0011 32.3 19.8 64 168-248 316-384 (480)
289 KOG4328 WD40 protein [Function 82.3 24 0.00051 33.6 11.2 148 80-248 190-353 (498)
290 KOG1215 Low-density lipoprotei 82.0 66 0.0014 34.3 16.2 172 87-283 448-629 (877)
291 KOG0649 WD40 repeat protein [G 82.0 34 0.00075 29.9 21.4 73 157-249 112-187 (325)
292 KOG0295 WD40 repeat-containing 81.9 43 0.00094 31.0 15.0 54 121-179 198-255 (406)
293 KOG3881 Uncharacterized conser 81.5 24 0.00052 32.8 10.8 84 92-178 221-309 (412)
294 PF15416 DUF4623: Domain of un 81.3 26 0.00056 32.0 10.7 59 227-285 141-204 (442)
295 PF14269 Arylsulfotran_2: Aryl 81.2 43 0.00093 30.5 13.6 121 121-249 148-290 (299)
296 KOG0284 Polyadenylation factor 81.2 36 0.00077 32.0 11.8 148 77-248 181-337 (464)
297 PF13570 PQQ_3: PQQ-like domai 80.8 3 6.5E-05 24.9 3.5 23 81-104 16-38 (40)
298 KOG0641 WD40 repeat protein [G 80.6 36 0.00079 29.3 22.4 25 77-102 33-58 (350)
299 PF08553 VID27: VID27 cytoplas 80.5 4.2 9.1E-05 41.9 6.3 65 79-143 580-645 (794)
300 smart00564 PQQ beta-propeller 79.6 4.4 9.5E-05 22.7 3.8 23 86-108 5-28 (33)
301 KOG2315 Predicted translation 79.5 65 0.0014 31.5 16.1 119 198-334 251-372 (566)
302 KOG0276 Vesicle coat complex C 79.3 72 0.0016 31.9 17.7 90 83-177 63-159 (794)
303 COG4247 Phy 3-phytase (myo-ino 79.1 45 0.00097 29.4 13.3 152 199-360 127-297 (364)
304 KOG0308 Conserved WD40 repeat- 78.7 37 0.00081 33.8 11.6 68 74-142 169-239 (735)
305 KOG0288 WD40 repeat protein Ti 78.2 62 0.0013 30.5 16.2 81 198-281 322-405 (459)
306 PF14339 DUF4394: Domain of un 77.1 50 0.0011 28.8 12.6 110 117-245 28-160 (236)
307 KOG0316 Conserved WD40 repeat- 76.8 50 0.0011 28.8 17.5 133 121-280 22-160 (307)
308 KOG4547 WD40 repeat-containing 74.5 81 0.0018 31.0 12.6 83 197-283 79-164 (541)
309 COG5276 Uncharacterized conser 74.5 67 0.0014 29.1 17.8 171 87-284 96-277 (370)
310 KOG0276 Vesicle coat complex C 73.6 1E+02 0.0022 30.8 19.3 56 122-178 304-370 (794)
311 PF05694 SBP56: 56kDa selenium 73.6 8.3 0.00018 36.7 5.7 60 161-237 313-393 (461)
312 PF10647 Gmad1: Lipoprotein Lp 73.4 65 0.0014 28.4 22.6 145 117-284 25-186 (253)
313 KOG3881 Uncharacterized conser 72.6 84 0.0018 29.4 16.0 83 196-281 224-308 (412)
314 KOG0305 Anaphase promoting com 72.5 1E+02 0.0022 30.2 15.9 190 81-296 265-465 (484)
315 TIGR03548 mutarot_permut cycli 72.5 78 0.0017 29.0 17.6 73 126-214 122-202 (323)
316 PRK10115 protease 2; Provision 70.4 1.4E+02 0.003 30.9 17.3 51 198-250 153-209 (686)
317 PF00930 DPPIV_N: Dipeptidyl p 70.0 95 0.0021 28.9 23.1 52 319-371 260-315 (353)
318 PF01011 PQQ: PQQ enzyme repea 69.7 16 0.00035 21.5 4.6 22 88-109 1-23 (38)
319 KOG2394 WD40 protein DMR-N9 [G 68.2 1E+02 0.0023 30.2 11.6 57 219-280 292-349 (636)
320 PF11768 DUF3312: Protein of u 67.7 30 0.00064 34.0 8.2 65 78-143 261-327 (545)
321 KOG2111 Uncharacterized conser 67.2 1E+02 0.0022 28.1 15.8 72 161-250 183-258 (346)
322 COG5276 Uncharacterized conser 66.8 1E+02 0.0022 28.0 18.7 100 127-253 96-204 (370)
323 KOG2114 Vacuolar assembly/sort 66.8 1.7E+02 0.0037 30.6 19.3 53 197-251 146-204 (933)
324 KOG0918 Selenium-binding prote 65.5 25 0.00055 32.9 6.9 30 222-251 316-345 (476)
325 KOG0650 WD40 repeat nucleolar 65.1 45 0.00097 33.0 8.7 68 161-248 568-637 (733)
326 PHA03098 kelch-like protein; P 64.6 1.5E+02 0.0033 29.3 20.7 105 126-249 293-415 (534)
327 KOG1009 Chromatin assembly com 64.2 94 0.002 29.3 10.2 31 218-249 124-154 (434)
328 PF04053 Coatomer_WDAD: Coatom 63.6 1.5E+02 0.0032 28.8 20.4 140 77-248 33-175 (443)
329 KOG1009 Chromatin assembly com 62.8 95 0.0021 29.2 10.0 95 118-230 68-178 (434)
330 KOG1408 WD40 repeat protein [F 62.4 1.9E+02 0.0041 29.7 15.4 28 76-103 459-487 (1080)
331 KOG0294 WD40 repeat-containing 61.5 1.3E+02 0.0028 27.5 16.2 108 116-249 169-282 (362)
332 KOG0307 Vesicle coat complex C 61.3 38 0.00083 35.9 8.0 135 93-250 180-329 (1049)
333 KOG0322 G-protein beta subunit 61.0 91 0.002 27.7 9.1 68 161-246 253-321 (323)
334 KOG1188 WD40 repeat protein [G 60.8 1.4E+02 0.003 27.5 12.3 53 197-249 49-103 (376)
335 KOG4547 WD40 repeat-containing 60.7 1.8E+02 0.0038 28.7 16.0 110 92-226 75-193 (541)
336 smart00284 OLF Olfactomedin-li 60.6 1.2E+02 0.0027 26.8 14.4 39 197-235 93-143 (255)
337 KOG0307 Vesicle coat complex C 60.6 90 0.0019 33.3 10.5 135 88-241 81-230 (1049)
338 TIGR03803 Gloeo_Verruco Gloeo_ 60.2 32 0.00069 19.9 4.5 20 315-335 13-32 (34)
339 smart00284 OLF Olfactomedin-li 59.9 1.3E+02 0.0027 26.8 16.6 150 76-247 74-251 (255)
340 PF09826 Beta_propel: Beta pro 59.0 1.9E+02 0.0042 28.7 15.0 105 241-372 249-356 (521)
341 KOG2395 Protein involved in va 58.6 58 0.0012 31.9 8.1 64 163-246 434-498 (644)
342 PF04762 IKI3: IKI3 family; I 58.3 2.5E+02 0.0055 30.2 13.8 48 197-245 96-147 (928)
343 PF11763 DIPSY: Cell-wall adhe 57.7 82 0.0018 24.0 9.6 89 77-177 4-99 (123)
344 PF04762 IKI3: IKI3 family; I 57.6 2.7E+02 0.0059 29.9 19.6 56 87-143 87-148 (928)
345 PF02897 Peptidase_S9_N: Proly 56.7 1.8E+02 0.0039 27.6 22.1 105 163-283 230-345 (414)
346 KOG2314 Translation initiation 55.6 1.1E+02 0.0024 30.1 9.5 82 198-283 472-557 (698)
347 KOG0647 mRNA export protein (c 53.8 1.7E+02 0.0038 26.5 21.2 73 80-153 31-112 (347)
348 KOG3621 WD40 repeat-containing 53.4 58 0.0013 32.9 7.5 90 89-179 47-145 (726)
349 COG4590 ABC-type uncharacteriz 52.7 1.7E+02 0.0037 28.3 10.1 139 221-371 224-386 (733)
350 KOG0303 Actin-binding protein 52.4 2.1E+02 0.0046 27.0 15.0 51 197-248 153-203 (472)
351 COG4222 Uncharacterized protei 51.4 2.2E+02 0.0048 27.0 13.5 17 220-236 202-218 (391)
352 PF00400 WD40: WD domain, G-be 51.4 45 0.00097 19.0 5.3 28 218-246 12-39 (39)
353 TIGR02608 delta_60_rpt delta-6 50.8 44 0.00096 21.8 4.4 40 268-334 5-44 (55)
354 KOG1034 Transcriptional repres 49.6 2.1E+02 0.0046 26.3 15.9 206 83-325 98-381 (385)
355 PF11725 AvrE: Pathogenicity f 48.9 1.4E+02 0.0029 33.8 9.9 30 215-247 486-515 (1774)
356 KOG0321 WD40 repeat-containing 48.9 3E+02 0.0065 27.8 11.7 23 121-143 276-299 (720)
357 KOG1215 Low-density lipoprotei 48.3 3.7E+02 0.008 28.7 15.3 102 163-284 440-544 (877)
358 PF11763 DIPSY: Cell-wall adhe 48.0 1.2E+02 0.0027 23.1 10.3 20 264-283 82-101 (123)
359 KOG0267 Microtubule severing p 47.8 1.4E+02 0.003 30.5 9.0 93 78-176 72-171 (825)
360 PF14779 BBS1: Ciliary BBSome 47.6 65 0.0014 28.5 6.3 54 88-142 196-255 (257)
361 PF13964 Kelch_6: Kelch motif 47.6 48 0.001 20.6 4.2 34 169-213 10-43 (50)
362 PLN02153 epithiospecifier prot 47.4 2.3E+02 0.005 26.1 20.5 122 87-214 32-175 (341)
363 KOG2395 Protein involved in va 46.6 48 0.001 32.4 5.6 65 79-143 433-498 (644)
364 KOG2111 Uncharacterized conser 46.1 2.4E+02 0.0052 25.8 17.1 160 97-281 75-244 (346)
365 KOG2394 WD40 protein DMR-N9 [G 45.3 88 0.0019 30.7 7.1 69 161-247 292-361 (636)
366 PLN02193 nitrile-specifier pro 44.4 3.1E+02 0.0067 26.7 16.3 113 87-214 228-359 (470)
367 PLN02193 nitrile-specifier pro 44.3 3.1E+02 0.0068 26.7 20.1 68 169-248 227-302 (470)
368 KOG4227 WD40 repeat protein [G 44.1 2.8E+02 0.0061 26.1 14.6 114 116-248 57-179 (609)
369 KOG1517 Guanine nucleotide bin 42.5 4.8E+02 0.01 28.4 13.2 57 197-255 1278-1340(1387)
370 KOG0270 WD40 repeat-containing 42.2 3.2E+02 0.0069 26.2 16.8 171 88-284 257-439 (463)
371 KOG1524 WD40 repeat-containing 41.8 3.6E+02 0.0078 26.7 16.8 27 221-247 260-286 (737)
372 KOG0269 WD40 repeat-containing 41.4 3.2E+02 0.007 28.2 10.5 95 196-293 108-208 (839)
373 KOG0313 Microtubule binding pr 41.1 3.1E+02 0.0068 25.8 15.4 104 73-178 257-365 (423)
374 PF15390 DUF4613: Domain of un 40.7 2.6E+02 0.0056 28.1 9.6 68 214-281 335-402 (671)
375 KOG4497 Uncharacterized conser 39.8 2.8E+02 0.0061 25.6 9.0 76 198-277 71-147 (447)
376 KOG1272 WD40-repeat-containing 38.9 1.7E+02 0.0036 28.3 7.8 18 161-178 295-312 (545)
377 KOG0649 WD40 repeat protein [G 38.9 2.8E+02 0.006 24.5 16.4 66 80-146 118-188 (325)
378 KOG0321 WD40 repeat-containing 37.8 3E+02 0.0066 27.7 9.6 30 222-252 105-134 (720)
379 PF07676 PD40: WD40-like Beta 36.5 87 0.0019 18.1 4.4 19 221-239 12-30 (39)
380 COG1770 PtrB Protease II [Amin 36.2 4.9E+02 0.011 26.6 17.7 76 158-249 127-209 (682)
381 COG3308 Predicted membrane pro 35.2 64 0.0014 24.6 3.7 39 1-43 1-40 (131)
382 KOG1898 Splicing factor 3b, su 35.2 6.2E+02 0.013 27.5 18.4 109 223-371 939-1048(1205)
383 PF15492 Nbas_N: Neuroblastoma 35.0 3.4E+02 0.0073 24.4 16.2 70 122-209 3-76 (282)
384 KOG2314 Translation initiation 33.9 4.5E+02 0.0098 26.2 9.9 61 160-234 493-554 (698)
385 KOG0264 Nucleosome remodeling 33.6 4.3E+02 0.0094 25.2 12.0 111 121-249 182-304 (422)
386 PF12894 Apc4_WD40: Anaphase-p 33.4 1.2E+02 0.0026 18.9 4.2 29 221-250 15-43 (47)
387 KOG0269 WD40 repeat-containing 33.4 4.8E+02 0.01 27.0 10.3 133 92-251 105-253 (839)
388 COG5167 VID27 Protein involved 32.9 2.2E+02 0.0047 28.1 7.6 49 197-247 582-631 (776)
389 KOG1188 WD40 repeat protein [G 32.8 4.1E+02 0.0088 24.7 14.0 145 89-250 42-198 (376)
390 COG4880 Secreted protein conta 31.9 4.4E+02 0.0095 25.4 9.2 77 198-282 120-196 (603)
391 KOG0918 Selenium-binding prote 31.9 85 0.0018 29.6 4.7 18 220-237 391-408 (476)
392 TIGR02171 Fb_sc_TIGR02171 Fibr 31.9 4.3E+02 0.0093 28.1 10.1 56 198-253 329-390 (912)
393 COG4247 Phy 3-phytase (myo-ino 31.7 3.8E+02 0.0081 23.9 19.9 29 219-248 206-234 (364)
394 PF11768 DUF3312: Protein of u 31.5 5.3E+02 0.012 25.7 16.6 67 162-248 262-329 (545)
395 PRK13717 conjugal transfer pro 30.4 92 0.002 24.2 3.9 23 1-23 1-23 (128)
396 PF13807 GNVR: G-rich domain o 29.3 90 0.002 22.0 3.7 14 4-17 46-59 (82)
397 PF02191 OLF: Olfactomedin-lik 29.0 4.1E+02 0.0088 23.5 17.3 148 76-247 69-246 (250)
398 PF15492 Nbas_N: Neuroblastoma 28.7 4.4E+02 0.0094 23.7 17.6 36 71-106 38-74 (282)
399 KOG1645 RING-finger-containing 28.5 1.7E+02 0.0036 27.8 5.9 64 79-143 196-264 (463)
400 PF05567 Neisseria_PilC: Neiss 28.5 1.1E+02 0.0024 28.4 5.0 52 138-207 182-240 (335)
401 PF08309 LVIVD: LVIVD repeat; 27.5 1.2E+02 0.0026 18.5 3.4 22 121-143 6-27 (42)
402 KOG4227 WD40 repeat protein [G 27.3 5.4E+02 0.012 24.4 11.6 64 79-143 108-177 (609)
403 KOG0322 G-protein beta subunit 26.5 1.3E+02 0.0029 26.7 4.7 55 78-133 253-310 (323)
404 PF13124 DUF3963: Protein of u 26.0 68 0.0015 18.6 1.9 17 16-32 18-36 (40)
405 PF02191 OLF: Olfactomedin-lik 25.1 4.8E+02 0.01 23.0 17.0 39 197-235 88-138 (250)
406 KOG0274 Cdc4 and related F-box 23.8 7.4E+02 0.016 24.8 22.9 149 74-250 247-402 (537)
407 PRK12641 flgF flagellar basal 23.8 4E+02 0.0088 23.5 7.5 13 164-176 132-144 (252)
408 KOG0647 mRNA export protein (c 23.8 5.7E+02 0.012 23.4 17.3 104 121-246 32-143 (347)
409 KOG2079 Vacuolar assembly/sort 23.7 3.5E+02 0.0076 29.3 7.8 87 90-178 102-195 (1206)
410 KOG1310 WD40 repeat protein [G 23.1 7.7E+02 0.017 24.7 16.3 226 115-372 50-304 (758)
411 KOG3567 Peptidylglycine alpha- 22.6 1.5E+02 0.0032 28.6 4.6 21 264-284 467-487 (501)
412 PLN02153 epithiospecifier prot 22.6 6E+02 0.013 23.3 19.0 17 198-214 101-117 (341)
413 PHA03164 hypothetical protein; 22.2 1.2E+02 0.0027 21.0 3.0 9 7-15 39-47 (88)
414 KOG1063 RNA polymerase II elon 21.9 8.8E+02 0.019 24.9 12.0 100 121-237 272-381 (764)
415 PHA03405 hypothetical protein; 21.9 56 0.0012 24.3 1.4 14 1-14 26-39 (130)
416 KOG0302 Ribosome Assembly prot 21.8 6.9E+02 0.015 23.6 13.1 141 87-248 224-378 (440)
417 KOG3545 Olfactomedin and relat 21.6 5.7E+02 0.012 22.6 9.3 37 200-239 149-189 (249)
418 KOG0267 Microtubule severing p 21.3 2.4E+02 0.0053 28.8 5.9 33 198-230 92-125 (825)
419 PHA02819 hypothetical protein; 21.2 1.8E+02 0.0038 20.0 3.5 11 7-17 36-46 (71)
420 COG4447 Uncharacterized protei 20.7 6.4E+02 0.014 22.9 15.5 29 216-246 169-197 (339)
421 PF03178 CPSF_A: CPSF A subuni 20.5 6.4E+02 0.014 22.8 13.6 131 198-371 62-202 (321)
422 KOG2041 WD40 repeat protein [G 20.4 5.9E+02 0.013 26.4 8.3 66 220-285 261-339 (1189)
423 KOG3551 Syntrophins (type beta 20.4 2.1E+02 0.0045 27.0 4.9 21 120-143 119-139 (506)
424 PHA02844 putative transmembran 20.0 1.9E+02 0.0042 20.0 3.5 11 7-17 38-48 (75)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=100.00 E-value=5.1e-47 Score=336.42 Aligned_cols=320 Identities=31% Similarity=0.535 Sum_probs=274.8
Q ss_pred CCCCCCCCCCCCCccccceeEeccCCcCCcceEEEecCCC--EEEEecCCeEEEEEc-----CCc-----eEEeeeecCc
Q 017317 50 LPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGV--LYTATRDGWIKRLHK-----NGT-----WENWKLIGGD 117 (373)
Q Consensus 50 ~~~~~~~g~~~~~~~l~~~~~~~~g~~~~P~~ia~d~~G~--l~v~~~~g~I~~~~~-----~g~-----~~~~~~~~~~ 117 (373)
.+..+..+.+.+++.+...+.+..+....|+.+.+. +|+ +|.|...|.|-+.+. .+. .......|++
T Consensus 38 ~~~~~~~~~l~~~~~~~g~E~~~fd~~~~gp~~~v~-dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGR 116 (376)
T KOG1520|consen 38 FSKLPLLGKLIPNNHLTGPESLLFDPQGGGPYTGVV-DGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGR 116 (376)
T ss_pred cCCCCcccccccccccCChhhheecccCCCceEEEE-CCceEEEeccCceEEEEEeccccccccccCCCcceecccccCC
Confidence 344454566777776666666666666656666665 344 678888888866652 011 2223445899
Q ss_pred cccCeEECCCC-cEEEEECCCcEEEEec-CC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccc
Q 017317 118 TLLGITTTQEN-EILVCDADKGLLKVTE-EG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEA 194 (373)
Q Consensus 118 p~~gl~~d~~g-~L~va~~~~gl~~~~~-~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~ 194 (373)
|. ||+++..| +|||||++.|++.+++ .| .+.+.+...|.++.+.|++.++++|.+||+|++++|..+++...++++
T Consensus 117 PL-Gl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g 195 (376)
T KOG1520|consen 117 PL-GIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEG 195 (376)
T ss_pred cc-eEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecC
Confidence 99 99999877 9999999999999994 55 788888889999999999999999999999999999999999999999
Q ss_pred cCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCC
Q 017317 195 KPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD 274 (373)
Q Consensus 195 ~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~d 274 (373)
+.+|++++||+.++..+++.+++.+|||+++|+|+++++++|+...+|.|||++|++.++.++|++++||+||||..+++
T Consensus 196 ~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~ 275 (376)
T KOG1520|consen 196 DPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDST 275 (376)
T ss_pred CCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred CCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccC----CCccEEEEEECCCCcEEEEEeCCCCceecceeEEEE
Q 017317 275 GSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAP----LHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALE 350 (373)
Q Consensus 275 G~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~ 350 (373)
|++||+....++..++++..+|++|+++.++|..++.... ..+|..|.+.+.+|++++++||++|+....++.+.+
T Consensus 276 G~fWVal~~~~~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~~G~il~~lhD~~g~~~~~~sev~E 355 (376)
T KOG1520|consen 276 GHFWVALHSKRSTLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDETGKILESLHDKEGKVITLVSEVGE 355 (376)
T ss_pred CCEEEEEecccchHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecCCCcEEEEEecCCCCceEEEEEEee
Confidence 9999999999999999999999999999999877655333 234466777779999999999999998888899999
Q ss_pred eCCEEEEeeCCCCeEEEeeCC
Q 017317 351 FDDHLYLGSLNTNFIGKLPLK 371 (373)
Q Consensus 351 ~~g~L~vgs~~~~~i~~~~l~ 371 (373)
.+|+||+||+..++|.+++|.
T Consensus 356 ~dg~LyiGS~~~p~i~~lkl~ 376 (376)
T KOG1520|consen 356 HDGHLYIGSLFNPYIARLKLP 376 (376)
T ss_pred cCCeEEEcccCcceeEEEecC
Confidence 999999999999999999974
No 2
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.96 E-value=1.5e-26 Score=205.51 Aligned_cols=231 Identities=26% Similarity=0.417 Sum_probs=177.2
Q ss_pred cceEEEec-CCCEEEEe-cCCeEEEEEcCCceEEeeeecCccccCeEEC-CCCcEEEEECCCcEEEEe-cCC-cEEEeec
Q 017317 79 PEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTLLGITTT-QENEILVCDADKGLLKVT-EEG-VTVLASH 153 (373)
Q Consensus 79 P~~ia~d~-~G~l~v~~-~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d-~~g~L~va~~~~gl~~~~-~~g-~~~l~~~ 153 (373)
||++++|+ +|.||+.+ .++.|+++++++.........+ |. |++++ ++|+||+++. .++..++ .++ .+.+...
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~-G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PN-GMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-EE-EEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-Cc-eEEEEccCCEEEEEEc-CceEEEecCCCcEEEEeec
Confidence 68899997 89999655 7899999996665444333333 88 99999 8899999986 5777778 778 7777665
Q ss_pred cCCc-cccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEE
Q 017317 154 VNGS-RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYL 232 (373)
Q Consensus 154 ~~~~-~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l 232 (373)
..+. ++..+|+++++++|+|||++...... .....|+||+++++ ++.+.+..++..||||++++|++.|
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~---------~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGA---------SGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCT---------TCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCcc---------ccccccceEEECCC-CeEEEEecCcccccceEECCcchhe
Confidence 4343 77899999999999999998752110 00011789999998 8888888889999999999999999
Q ss_pred EEEeCCCCeEEEEEecCCC--CcceeEEec--CCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchh
Q 017317 233 VVCETFKFRCLKYWLKGES--KEQTEIFVE--NLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKL 308 (373)
Q Consensus 233 ~v~~~~~~~i~~~~~~~~~--~~~~~~~~~--~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 308 (373)
||+++..++|++|+++... ....+.+.. ...+.|||+++|++|+||++.+.+
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~------------------------ 204 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG------------------------ 204 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT------------------------
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC------------------------
Confidence 9999999999999987432 344455543 223469999999999999998865
Q ss_pred hhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEe---CCEEEEeeC
Q 017317 309 IKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEF---DDHLYLGSL 360 (373)
Q Consensus 309 ~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~---~g~L~vgs~ 360 (373)
+.|.+++++|+.+..+..+. ..++.+++. .++|||.+.
T Consensus 205 ----------~~I~~~~p~G~~~~~i~~p~----~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 205 ----------GRIVVFDPDGKLLREIELPV----PRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp ----------TEEEEEETTSCEEEEEE-SS----SSEEEEEEESTTSSEEEEEEB
T ss_pred ----------CEEEEECCCccEEEEEcCCC----CCEEEEEEECCCCCEEEEEeC
Confidence 36899999999999998773 257888885 268999885
No 3
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=4e-26 Score=205.18 Aligned_cols=253 Identities=26% Similarity=0.420 Sum_probs=193.3
Q ss_pred CCCccccceeEeccCCcCCcceEEEecCCCEE-EEecCCeEEEEEc-CCceEEeeeecCccccCeEECCCCcEEEEECCC
Q 017317 60 PTTSDIQSVTRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADK 137 (373)
Q Consensus 60 ~~~~~l~~~~~~~~g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~ 137 (373)
.+...+.+...+.||+++.|+ .+.|| ++..+++|+++++ +|+.+.+......+. ++.++.+|.|+++. +
T Consensus 15 ~~~~~~~~~~~~gEgP~w~~~------~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~-~~~~d~~g~Lv~~~--~ 85 (307)
T COG3386 15 APVTLLDKGATLGEGPVWDPD------RGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSS-GALIDAGGRLIACE--H 85 (307)
T ss_pred cceeEeecccccccCccCcCC------CCEEEEEeCCCCeEEEecCCcCceEEEECCCCccc-ceeecCCCeEEEEc--c
Confidence 334456677778888777774 45444 7778999999996 587888877666777 88999988998886 4
Q ss_pred cEEEEe-cCC-c-EEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee
Q 017317 138 GLLKVT-EEG-V-TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214 (373)
Q Consensus 138 gl~~~~-~~g-~-~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~ 214 (373)
|+++++ +++ . +.++....+.+.+.+|+..++++|++||++..+ + . ....+....|.|||+|+.++..+.+.
T Consensus 86 g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~---~--~~~~~~~~~G~lyr~~p~g~~~~l~~ 159 (307)
T COG3386 86 GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-F---D--LGKSEERPTGSLYRVDPDGGVVRLLD 159 (307)
T ss_pred ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCc-c---c--cCccccCCcceEEEEcCCCCEEEeec
Confidence 677676 555 4 777777778888999999999999999999863 1 1 33334456789999999644444444
Q ss_pred cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec---CCCCcce-eEEecCCCCCCCceeECCCCCEEEEEecCCCchhh
Q 017317 215 DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK---GESKEQT-EIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLE 290 (373)
Q Consensus 215 ~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~---~~~~~~~-~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~ 290 (373)
..+..||||+||||++.+|++++..++|++|+.+ +...+.. ..+....+|.|||+++|.+|+||++...+.
T Consensus 160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g----- 234 (307)
T COG3386 160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGG----- 234 (307)
T ss_pred CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCC-----
Confidence 4599999999999999999999999999999886 3322322 233435679999999999999996544321
Q ss_pred hccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEeC---CEEEEeeCCCCe
Q 017317 291 FVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFD---DHLYLGSLNTNF 364 (373)
Q Consensus 291 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~---g~L~vgs~~~~~ 364 (373)
+.|.+|+++|+.+..+..|. ..++..++.+ ++||+.+...+.
T Consensus 235 ----------------------------~~v~~~~pdG~l~~~i~lP~----~~~t~~~FgG~~~~~L~iTs~~~~~ 279 (307)
T COG3386 235 ----------------------------GRVVRFNPDGKLLGEIKLPV----KRPTNPAFGGPDLNTLYITSARSGM 279 (307)
T ss_pred ----------------------------ceEEEECCCCcEEEEEECCC----CCCccceEeCCCcCEEEEEecCCCC
Confidence 25899999999999998876 2477777765 799999988854
No 4
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.85 E-value=5e-19 Score=150.05 Aligned_cols=237 Identities=16% Similarity=0.192 Sum_probs=177.2
Q ss_pred cCCcceEEEecCCCEEEE-ecCCeEEEEE-cCCceEEeeee-cCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEE
Q 017317 76 LNGPEDVCVDRNGVLYTA-TRDGWIKRLH-KNGTWENWKLI-GGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVL 150 (373)
Q Consensus 76 ~~~P~~ia~d~~G~l~v~-~~~g~I~~~~-~~g~~~~~~~~-~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l 150 (373)
-.+|..++.++||.+|.+ +..+.|-++| .+|+++.+... +..|+ +|.+++||..||+|...+|.|++ +++ ++.+
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Ph-giv~gpdg~~Witd~~~aI~R~dpkt~evt~f 139 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPH-GIVVGPDGSAWITDTGLAIGRLDPKTLEVTRF 139 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCc-eEEECCCCCeeEecCcceeEEecCcccceEEe
Confidence 478999999999999964 4677888999 68898888654 45799 99999999999999888999999 566 5554
Q ss_pred eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cCCCCcceEEEccCC
Q 017317 151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDE 229 (373)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~~gi~~~~dg 229 (373)
.-.. .......+...+|++|+|||+... |.--|+||.++..+++- .....|+||+..|||
T Consensus 140 ~lp~-~~a~~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdG 200 (353)
T COG4257 140 PLPL-EHADANLETAVFDPWGNLWFTGQI------------------GAYGRLDPARNVISVFPAPQGGGPYGICATPDG 200 (353)
T ss_pred eccc-ccCCCcccceeeCCCccEEEeecc------------------ccceecCcccCceeeeccCCCCCCcceEECCCC
Confidence 3211 112234567899999999999754 33337888877666653 345678999999999
Q ss_pred CEEEEEeCCCCeEEEEEecCCCCcceeEEecC--CCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcch
Q 017317 230 DYLVVCETFKFRCLKYWLKGESKEQTEIFVEN--LPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPK 307 (373)
Q Consensus 230 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~ 307 (373)
+ +|+++...+-|.++|... +..+++... +..-...+-.|+.|++|++++..
T Consensus 201 s-vwyaslagnaiaridp~~---~~aev~p~P~~~~~gsRriwsdpig~~wittwg~----------------------- 253 (353)
T COG4257 201 S-VWYASLAGNAIARIDPFA---GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGT----------------------- 253 (353)
T ss_pred c-EEEEeccccceEEccccc---CCcceecCCCcccccccccccCccCcEEEeccCC-----------------------
Confidence 8 999998888899988432 233333221 12234456679999999999875
Q ss_pred hhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEE-EeCCEEEEeeCCCCeEEEeeCCC
Q 017317 308 LIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSAL-EFDDHLYLGSLNTNFIGKLPLKA 372 (373)
Q Consensus 308 ~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~-~~~g~L~vgs~~~~~i~~~~l~~ 372 (373)
+.+.+||+.-+...+|.-|..+ . ...++. +..|++|+.....++|.||+...
T Consensus 254 -----------g~l~rfdPs~~sW~eypLPgs~-a-rpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 254 -----------GSLHRFDPSVTSWIEYPLPGSK-A-RPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred -----------ceeeEeCcccccceeeeCCCCC-C-CcceeeeccCCcEEeeccccCceeecCccc
Confidence 4589999998888888877654 2 234444 44589999999999999998653
No 5
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.80 E-value=7.1e-17 Score=168.36 Aligned_cols=246 Identities=18% Similarity=0.214 Sum_probs=173.8
Q ss_pred CcCCcceEEEec-CCCEEEEe-cCCeEEEEEcCCceEEeeee---------------cCccccCeEECCCCc-EEEEECC
Q 017317 75 ILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWENWKLI---------------GGDTLLGITTTQENE-ILVCDAD 136 (373)
Q Consensus 75 ~~~~P~~ia~d~-~G~l~v~~-~~g~I~~~~~~g~~~~~~~~---------------~~~p~~gl~~d~~g~-L~va~~~ 136 (373)
++..|..+++|+ +|+||+++ .+++|.+++.+|+....... ...|. |++++++|+ |||+|..
T Consensus 566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~-GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQ-GLAYNAKKNLLYVADTE 644 (1057)
T ss_pred cCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCc-EEEEeCCCCEEEEEeCC
Confidence 478899999997 68899876 67899999988875433221 23589 999998765 8999876
Q ss_pred C-cEEEEe-cCC-cEEEeec-c-----CC------ccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceE
Q 017317 137 K-GLLKVT-EEG-VTVLASH-V-----NG------SRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKL 200 (373)
Q Consensus 137 ~-gl~~~~-~~g-~~~l~~~-~-----~~------~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l 200 (373)
+ .|.+++ .++ ++.+... . .+ ..++.|.++++++ +|.+||++.. ++.|
T Consensus 645 n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----------------~~~I 707 (1057)
T PLN02919 645 NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----------------QHQI 707 (1057)
T ss_pred CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----------------CCeE
Confidence 4 466677 566 6655431 1 11 1256788999999 6799999865 4678
Q ss_pred EEEeCCCCeEEEee---------------cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCccee---------
Q 017317 201 LKYDPSLNETSILL---------------DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTE--------- 256 (373)
Q Consensus 201 ~~~d~~~~~~~~~~---------------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~--------- 256 (373)
+++|..++.+..+. ..+..|+|+++++|++.|||+++.+++|.+|++++.......
T Consensus 708 ~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~ 787 (1057)
T PLN02919 708 WEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDN 787 (1057)
T ss_pred EEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcc
Confidence 88888766654332 124578999999999999999999999999997643211000
Q ss_pred --EEec-------CCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCC
Q 017317 257 --IFVE-------NLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAAN 327 (373)
Q Consensus 257 --~~~~-------~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~ 327 (373)
.+.. .....|.++++|++|++||+.... +.|.++|++
T Consensus 788 l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N----------------------------------~rIrviD~~ 833 (1057)
T PLN02919 788 LFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN----------------------------------HKIKKLDPA 833 (1057)
T ss_pred cccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC----------------------------------CEEEEEECC
Confidence 0000 012368999999999999998764 247778876
Q ss_pred CcEEEEEeCC------CC----ceecceeEEEEe-CCEEEEeeCCCCeEEEeeCCC
Q 017317 328 GIVIRKFEDP------NG----KVMSFVTSALEF-DDHLYLGSLNTNFIGKLPLKA 372 (373)
Q Consensus 328 g~~~~~~~~~------~g----~~~~~~~~~~~~-~g~L~vgs~~~~~i~~~~l~~ 372 (373)
+..+..+... +| ..++.+..+..+ +|+||+....++.|.++++..
T Consensus 834 tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 834 TKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred CCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 6555443211 11 124567777765 689999999999999999864
No 6
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.80 E-value=1.6e-19 Score=130.36 Aligned_cols=88 Identities=51% Similarity=1.009 Sum_probs=74.6
Q ss_pred ceeEEcCC-CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCe
Q 017317 163 DDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFR 241 (373)
Q Consensus 163 ~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~ 241 (373)
|+++++++ |.|||++++.+|...++..+++|+.++|+|++|||.+++.+++.+++.+|||+++++|+++++|+|+..+|
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence 58899998 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCC
Q 017317 242 CLKYWLKGE 250 (373)
Q Consensus 242 i~~~~~~~~ 250 (373)
|.|||++|+
T Consensus 81 i~rywl~Gp 89 (89)
T PF03088_consen 81 ILRYWLKGP 89 (89)
T ss_dssp EEEEESSST
T ss_pred EEEEEEeCC
Confidence 999999874
No 7
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.74 E-value=1.7e-15 Score=128.83 Aligned_cols=244 Identities=10% Similarity=0.074 Sum_probs=176.6
Q ss_pred cccceeEeccCCcCCcceEEEecCCCEEEEecCCeEEEEE-cCCceEEeeeec----CccccCeEECCCCcEEEEECCCc
Q 017317 64 DIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIG----GDTLLGITTTQENEILVCDADKG 138 (373)
Q Consensus 64 ~l~~~~~~~~g~~~~P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~----~~p~~gl~~d~~g~L~va~~~~g 138 (373)
...++++...|.-..|..|.+++||..|+.+....|.|++ ++..++.|.... .+.. ...||+.|+||+... .|
T Consensus 91 ~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nle-t~vfD~~G~lWFt~q-~G 168 (353)
T COG4257 91 ATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLE-TAVFDPWGNLWFTGQ-IG 168 (353)
T ss_pred CCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecccccCCCccc-ceeeCCCccEEEeec-cc
Confidence 3457777777777889999999999999877666899999 477788775443 3344 678999999999864 33
Q ss_pred E-EEEec-CC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec
Q 017317 139 L-LKVTE-EG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD 215 (373)
Q Consensus 139 l-~~~~~-~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~ 215 (373)
. -++|+ .+ ++++... ....+++|++.+||.+|++... ...|-++|+.++..+++..
T Consensus 169 ~yGrLdPa~~~i~vfpaP----qG~gpyGi~atpdGsvwyasla-----------------gnaiaridp~~~~aev~p~ 227 (353)
T COG4257 169 AYGRLDPARNVISVFPAP----QGGGPYGICATPDGSVWYASLA-----------------GNAIARIDPFAGHAEVVPQ 227 (353)
T ss_pred cceecCcccCceeeeccC----CCCCCcceEECCCCcEEEEecc-----------------ccceEEcccccCCcceecC
Confidence 3 37773 45 6665332 2246899999999999999643 2479999998876555432
Q ss_pred CC---CCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEE-ecCCCCCCCceeECCCCCEEEEEecCCCchhhh
Q 017317 216 SL---FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIF-VENLPGGPDNIKLAPDGSFWIAILQLSSPGLEF 291 (373)
Q Consensus 216 ~~---~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~ 291 (373)
.. .....+.-++.|+ +|+++.+..++++|+... .....+ .......|..+.+|..|++|....+.
T Consensus 228 P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~---~sW~eypLPgs~arpys~rVD~~grVW~sea~a------- 296 (353)
T COG4257 228 PNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSV---TSWIEYPLPGSKARPYSMRVDRHGRVWLSEADA------- 296 (353)
T ss_pred CCcccccccccccCccCc-EEEeccCCceeeEeCccc---ccceeeeCCCCCCCcceeeeccCCcEEeecccc-------
Confidence 21 1223466788887 999999999999998543 222223 22223478899999999999998775
Q ss_pred ccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeC
Q 017317 292 VHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPL 370 (373)
Q Consensus 292 ~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l 370 (373)
+.|.+||+....+.+|..+.-. .....+....|.+|++...-+.+.+++.
T Consensus 297 ---------------------------gai~rfdpeta~ftv~p~pr~n--~gn~ql~gr~ge~W~~e~gvd~lv~~r~ 346 (353)
T COG4257 297 ---------------------------GAIGRFDPETARFTVLPIPRPN--SGNIQLDGRPGELWFTEAGVDALVTTRI 346 (353)
T ss_pred ---------------------------CceeecCcccceEEEecCCCCC--CCceeccCCCCceeecccCcceeEEEEe
Confidence 3589999999999988765422 2234444456899999999998888774
No 8
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.62 E-value=1.3e-13 Score=144.04 Aligned_cols=190 Identities=14% Similarity=0.210 Sum_probs=132.2
Q ss_pred cCCcceEEEecCC-CEEEEe-cCCeEEEEE-cCCceEEeeee-----------------cCccccCeEECC-CCcEEEEE
Q 017317 76 LNGPEDVCVDRNG-VLYTAT-RDGWIKRLH-KNGTWENWKLI-----------------GGDTLLGITTTQ-ENEILVCD 134 (373)
Q Consensus 76 ~~~P~~ia~d~~G-~l~v~~-~~g~I~~~~-~~g~~~~~~~~-----------------~~~p~~gl~~d~-~g~L~va~ 134 (373)
+..|.+|++|++| .||+++ .+++|.+++ .++..+++... ...|. ++++++ +|.+||++
T Consensus 623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~-gVa~dp~~g~LyVad 701 (1057)
T PLN02919 623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPW-DVCFEPVNEKVYIAM 701 (1057)
T ss_pred cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCe-EEEEecCCCeEEEEE
Confidence 5679999999865 489876 567888888 44555544321 23678 999998 67899998
Q ss_pred CC-CcEEEEe-cCC-cEEEeec-----cC-----CccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceE
Q 017317 135 AD-KGLLKVT-EEG-VTVLASH-----VN-----GSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKL 200 (373)
Q Consensus 135 ~~-~gl~~~~-~~g-~~~l~~~-----~~-----~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l 200 (373)
.. +.|++++ .++ ...+... .. ...+..|++|+++++|. |||++.. +++|
T Consensus 702 ~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-----------------n~~I 764 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-----------------SSSI 764 (1057)
T ss_pred CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-----------------CCeE
Confidence 65 4577777 566 5443211 00 12345789999999985 9999864 4689
Q ss_pred EEEeCCCCeEEEeec----------------------CCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEE
Q 017317 201 LKYDPSLNETSILLD----------------------SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIF 258 (373)
Q Consensus 201 ~~~d~~~~~~~~~~~----------------------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~ 258 (373)
.++|++++....+.. .+..|.|++++++|+ +||+++.+++|.+|+.++....+....
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEecc
Confidence 999987665433221 134689999999998 999999999999999765432211100
Q ss_pred e----------cCCCCCCCceeECCCCCEEEEEecC
Q 017317 259 V----------ENLPGGPDNIKLAPDGSFWIAILQL 284 (373)
Q Consensus 259 ~----------~~~~g~p~~i~~d~dG~lwva~~~~ 284 (373)
. ......|.++++|++|++||+....
T Consensus 844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N 879 (1057)
T PLN02919 844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN 879 (1057)
T ss_pred CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence 0 0111369999999999999998654
No 9
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.62 E-value=8.6e-14 Score=130.51 Aligned_cols=174 Identities=21% Similarity=0.279 Sum_probs=123.4
Q ss_pred eeEeccC-CcCCcceEEEecCCCEEEEec------------CC-eEEEEE-c--CCc---eEEeeeecCccccCeEECCC
Q 017317 68 VTRLGEG-ILNGPEDVCVDRNGVLYTATR------------DG-WIKRLH-K--NGT---WENWKLIGGDTLLGITTTQE 127 (373)
Q Consensus 68 ~~~~~~g-~~~~P~~ia~d~~G~l~v~~~------------~g-~I~~~~-~--~g~---~~~~~~~~~~p~~gl~~d~~ 127 (373)
++.+++. .+..|+.|++|++|+|||++. .+ +|++++ . +|+ .+.++.....|. ||++.++
T Consensus 4 ~~l~A~~p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~-Gi~~~~~ 82 (367)
T TIGR02604 4 VTLFAAEPLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVT-GLAVAVG 82 (367)
T ss_pred EEEEECCCccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCcc-ceeEecC
Confidence 3445543 388999999999999999862 23 898887 3 454 456666677899 9999988
Q ss_pred CcEEEEECCCcEEEEe-c--C----C-cEEEeeccCCc---cccccceeEEcCCCcEEEEeCCcccccccc--ccccccc
Q 017317 128 NEILVCDADKGLLKVT-E--E----G-VTVLASHVNGS---RINLADDLIAATDGSIYFSVASTKFGLHNW--GLDLLEA 194 (373)
Q Consensus 128 g~L~va~~~~gl~~~~-~--~----g-~~~l~~~~~~~---~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~--~~~~~~~ 194 (373)
| |||++. ..|+++. . + + .+++....... ..+.++++++++||.|||++.+........ ..+....
T Consensus 83 G-lyV~~~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~ 160 (367)
T TIGR02604 83 G-VYVATP-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQ 160 (367)
T ss_pred C-EEEeCC-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccc
Confidence 8 999975 4688884 2 2 2 34555544332 356789999999999999987421110000 0011122
Q ss_pred cCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEE
Q 017317 195 KPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKY 245 (373)
Q Consensus 195 ~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~ 245 (373)
...|.++++++++++.+.+..++.+|+|++++++|+ +|+++.......++
T Consensus 161 ~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i 210 (367)
T TIGR02604 161 GLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRV 210 (367)
T ss_pred ccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeEE
Confidence 345789999999999999999999999999999998 89998755544443
No 10
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.54 E-value=5.7e-12 Score=105.11 Aligned_cols=226 Identities=18% Similarity=0.252 Sum_probs=143.0
Q ss_pred CCCEEEEecCCeEEEEEc-CCceEEeeeecCccccCeEECCCC--cEEEEECC--CcEEEEe-cCC-cEEEee---ccCC
Q 017317 87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQEN--EILVCDAD--KGLLKVT-EEG-VTVLAS---HVNG 156 (373)
Q Consensus 87 ~G~l~v~~~~g~I~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g--~L~va~~~--~gl~~~~-~~g-~~~l~~---~~~~ 156 (373)
+-.+||.-..|.|+|+|. ..+..... ..+.|..|..+--.| ..+++.-+ .++..++ -.. ..++.+ ....
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~-ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAK-IEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEE-EecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 455668889999999982 22222111 112222144443222 34544322 3444454 122 222222 2233
Q ss_pred ccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEe
Q 017317 157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE 236 (373)
Q Consensus 157 ~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~ 236 (373)
...+..|+-.+||+|+.|.+++.. ++ +.+| ...|.||+.- ..++++.+...+.-+||++|+.|.+.+|+.+
T Consensus 106 ~kknR~NDgkvdP~Gryy~GtMad-~~------~~le-~~~g~Ly~~~-~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iD 176 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRYYGGTMAD-FG------DDLE-PIGGELYSWL-AGHQVELIWNCVGISNGLAWDSDAKKFYYID 176 (310)
T ss_pred HHhcccccCccCCCCceeeeeecc-cc------cccc-ccccEEEEec-cCCCceeeehhccCCccccccccCcEEEEEc
Confidence 345677888999999999887641 11 1222 1224455554 4578888888888999999999999999999
Q ss_pred CCCCeEEEE--EecCCCCcceeEEec------CCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchh
Q 017317 237 TFKFRCLKY--WLKGESKEQTEIFVE------NLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKL 308 (373)
Q Consensus 237 ~~~~~i~~~--~~~~~~~~~~~~~~~------~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 308 (373)
+.+..|..| +..+.......+..+ ..+-.|||+++|.+|+|||+++.+
T Consensus 177 sln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng------------------------ 232 (310)
T KOG4499|consen 177 SLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG------------------------ 232 (310)
T ss_pred cCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC------------------------
Confidence 999999555 465544443333321 123479999999999999999987
Q ss_pred hhhccCCCccEEEEEECC-CCcEEEEEeCCCCceecceeEEEEeC---CEEEEeeC
Q 017317 309 IKLVAPLHKKAAVVNVAA-NGIVIRKFEDPNGKVMSFVTSALEFD---DHLYLGSL 360 (373)
Q Consensus 309 ~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~~---g~L~vgs~ 360 (373)
+.++++|+ .||.+..+.-|. ..+++.++.+ +-+|+.+.
T Consensus 233 ----------~~V~~~dp~tGK~L~eiklPt----~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 233 ----------GTVQKVDPTTGKILLEIKLPT----PQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred ----------cEEEEECCCCCcEEEEEEcCC----CceEEEEecCCCccEEEEEeh
Confidence 46899996 599988887664 3578888865 35777664
No 11
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.51 E-value=1.5e-12 Score=115.47 Aligned_cols=177 Identities=19% Similarity=0.360 Sum_probs=123.5
Q ss_pred CCcceEEEe-cCCCEEEEecCCeEEEEE-cCCceEEeeee------cCccccCeEECCCCcEEEEECC---------CcE
Q 017317 77 NGPEDVCVD-RNGVLYTATRDGWIKRLH-KNGTWENWKLI------GGDTLLGITTTQENEILVCDAD---------KGL 139 (373)
Q Consensus 77 ~~P~~ia~d-~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~------~~~p~~gl~~d~~g~L~va~~~---------~gl 139 (373)
..|.+++++ ++|.+|++...+ +.+++ .+|+.+.+... ..+|+ .++++++|+||+++.. ..+
T Consensus 40 ~~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~N-D~~vd~~G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 40 PGPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPN-DVAVDPDGNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp SSEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEE-EEEE-TTS-EEEEEECCBCTTCGGSEEE
T ss_pred CCCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCc-eEEEcCCCCEEEEecCCCccccccccce
Confidence 349999999 799999988755 45558 56766665543 24578 9999999999999753 248
Q ss_pred EEEecCC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCC--CCeE---EE
Q 017317 140 LKVTEEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LNET---SI 212 (373)
Q Consensus 140 ~~~~~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--~~~~---~~ 212 (373)
++++.++ .+.+... +..+|+|++++||+ ||++++. .++|++|+.+ +++. +.
T Consensus 118 ~~~~~~~~~~~~~~~-----~~~pNGi~~s~dg~~lyv~ds~-----------------~~~i~~~~~~~~~~~~~~~~~ 175 (246)
T PF08450_consen 118 YRIDPDGKVTVVADG-----LGFPNGIAFSPDGKTLYVADSF-----------------NGRIWRFDLDADGGELSNRRV 175 (246)
T ss_dssp EEEETTSEEEEEEEE-----ESSEEEEEEETTSSEEEEEETT-----------------TTEEEEEEEETTTCCEEEEEE
T ss_pred EEECCCCeEEEEecC-----cccccceEECCcchheeecccc-----------------cceeEEEeccccccceeeeee
Confidence 8888557 6555432 45789999999994 8999875 4789999874 3312 22
Q ss_pred ee--cC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeEC-CC-CCEEEEEe
Q 017317 213 LL--DS-LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA-PD-GSFWIAIL 282 (373)
Q Consensus 213 ~~--~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d-~d-G~lwva~~ 282 (373)
+. .. ...|.|++++.+|+ ||++....++|.+|+.+|..... +. .....|.++++. ++ +.|||++.
T Consensus 176 ~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G~~~~~---i~-~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 176 FIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDGKLLRE---IE-LPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSCEEEE---EE--SSSSEEEEEEESTTSSEEEEEEB
T ss_pred EEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCccEEEE---Ec-CCCCCEEEEEEECCCCCEEEEEeC
Confidence 22 22 23589999999998 99999999999999976542221 21 111478899993 44 46999875
No 12
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.49 E-value=1.2e-10 Score=108.44 Aligned_cols=243 Identities=16% Similarity=0.244 Sum_probs=150.7
Q ss_pred cCCcceEEEec-CCCEEEEec----CCeEEEEE--cC-CceEEeee---ecCccccCeEECCCCc-EEEEECCCc-EEEE
Q 017317 76 LNGPEDVCVDR-NGVLYTATR----DGWIKRLH--KN-GTWENWKL---IGGDTLLGITTTQENE-ILVCDADKG-LLKV 142 (373)
Q Consensus 76 ~~~P~~ia~d~-~G~l~v~~~----~g~I~~~~--~~-g~~~~~~~---~~~~p~~gl~~d~~g~-L~va~~~~g-l~~~ 142 (373)
...|..+++++ +..||+... .|.|..+. .+ |+.+.+.. .+..|+ .++++++|+ ||++.+..| +..+
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~-~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC-HIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE-EEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE-EEEEecCCCEEEEEEccCCeEEEE
Confidence 47899999988 556777664 57886666 55 66654432 345678 999999885 888887655 3333
Q ss_pred e--cCC-cEEEeec-------cC--CccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCC--C
Q 017317 143 T--EEG-VTVLASH-------VN--GSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--L 207 (373)
Q Consensus 143 ~--~~g-~~~l~~~-------~~--~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--~ 207 (373)
+ .+| +...... .. ......+..+.++|||+ +|++|.+ ..+|+.|+.+ +
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG-----------------~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG-----------------ADRVYVYDIDDDT 177 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-----------------TTEEEEEEE-TTS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCC
Confidence 3 456 4332110 00 11234577899999985 8888754 3466665544 3
Q ss_pred CeEEE----eecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC--CCcceeEEecCC----CC--CCCceeECCCC
Q 017317 208 NETSI----LLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE--SKEQTEIFVENL----PG--GPDNIKLAPDG 275 (373)
Q Consensus 208 ~~~~~----~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~----~g--~p~~i~~d~dG 275 (373)
++.+. .......|..++|++|++++|+++...+.|..|+++.. ......... .+ .+ .+.+|++++||
T Consensus 178 ~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~i~ispdg 256 (345)
T PF10282_consen 178 GKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS-TLPEGFTGENAPAEIAISPDG 256 (345)
T ss_dssp -TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE-SCETTSCSSSSEEEEEE-TTS
T ss_pred ceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee-eccccccccCCceeEEEecCC
Confidence 33433 23445678899999999999999999999999988732 222222221 11 11 46779999999
Q ss_pred C-EEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCC-CcEEEEEeCCCCceecceeEEEEe--
Q 017317 276 S-FWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAAN-GIVIRKFEDPNGKVMSFVTSALEF-- 351 (373)
Q Consensus 276 ~-lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~-- 351 (373)
+ ||++..+.. ...++.+|++ |+....-.-+.+. ..+..+..+
T Consensus 257 ~~lyvsnr~~~--------------------------------sI~vf~~d~~~g~l~~~~~~~~~G--~~Pr~~~~s~~ 302 (345)
T PF10282_consen 257 RFLYVSNRGSN--------------------------------SISVFDLDPATGTLTLVQTVPTGG--KFPRHFAFSPD 302 (345)
T ss_dssp SEEEEEECTTT--------------------------------EEEEEEECTTTTTEEEEEEEEESS--SSEEEEEE-TT
T ss_pred CEEEEEeccCC--------------------------------EEEEEEEecCCCceEEEEEEeCCC--CCccEEEEeCC
Confidence 7 677765531 2346677544 5543321112211 246777664
Q ss_pred CCEEEEeeCCCCeEEEeeCC
Q 017317 352 DDHLYLGSLNTNFIGKLPLK 371 (373)
Q Consensus 352 ~g~L~vgs~~~~~i~~~~l~ 371 (373)
++.||+++..++.|..++++
T Consensus 303 g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 303 GRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SSEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEecCCCeEEEEEEe
Confidence 56899999999999999875
No 13
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.47 E-value=2e-10 Score=106.48 Aligned_cols=239 Identities=11% Similarity=0.117 Sum_probs=145.9
Q ss_pred CCcceEEEecCCC-EEEEe-cCCeEEEEE--cCCceEEee--eecCccccCeEECCCCc-EEEEECC-CcEEEEe--cCC
Q 017317 77 NGPEDVCVDRNGV-LYTAT-RDGWIKRLH--KNGTWENWK--LIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT--EEG 146 (373)
Q Consensus 77 ~~P~~ia~d~~G~-l~v~~-~~g~I~~~~--~~g~~~~~~--~~~~~p~~gl~~d~~g~-L~va~~~-~gl~~~~--~~g 146 (373)
.+|..++++++|+ ||++. .+++|..++ .+|+.+... ...+.|. +++++++|+ ||++... +.+..++ ++|
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 5688999999876 67776 467887666 355554332 2345788 999999996 7777653 3455555 345
Q ss_pred -c-EEEeeccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCC-CeEEE------eecC
Q 017317 147 -V-TVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSI------LLDS 216 (373)
Q Consensus 147 -~-~~l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~------~~~~ 216 (373)
. +.+. ...+ ...+..++++|+| .+|+++.. .+.|..||.++ +.... ....
T Consensus 114 ~~~~~~~-~~~~--~~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~~~g~l~~~~~~~~~~~~ 173 (330)
T PRK11028 114 IPVAPIQ-IIEG--LEGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLSDDGHLVAQEPAEVTTVE 173 (330)
T ss_pred CCCCcee-eccC--CCcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEECCCCcccccCCCceecCC
Confidence 3 2221 1111 2357788999998 57777653 35677776543 32211 1123
Q ss_pred CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC--CCcceeEEecC-----CCCCCCceeECCCCC-EEEEEecCCCch
Q 017317 217 LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE--SKEQTEIFVEN-----LPGGPDNIKLAPDGS-FWIAILQLSSPG 288 (373)
Q Consensus 217 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~-----~~g~p~~i~~d~dG~-lwva~~~~~~~~ 288 (373)
...|.+++|+|||+++|+++...+.|..|+++.. .......+... .+..+..+.++++|+ +|++.....
T Consensus 174 g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~--- 250 (330)
T PRK11028 174 GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTAS--- 250 (330)
T ss_pred CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCC---
Confidence 4568899999999999999988899999998632 21111111100 012344588999997 677644321
Q ss_pred hhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeC-CCCceecceeEEEEe--CCEEEEeeCCCCeE
Q 017317 289 LEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFED-PNGKVMSFVTSALEF--DDHLYLGSLNTNFI 365 (373)
Q Consensus 289 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~-~~g~~~~~~~~~~~~--~g~L~vgs~~~~~i 365 (373)
...++.++.++........ +.+. .+..+..+ +.+||+++..++.|
T Consensus 251 -----------------------------~I~v~~i~~~~~~~~~~~~~~~~~---~p~~~~~~~dg~~l~va~~~~~~v 298 (330)
T PRK11028 251 -----------------------------LISVFSVSEDGSVLSFEGHQPTET---QPRGFNIDHSGKYLIAAGQKSHHI 298 (330)
T ss_pred -----------------------------eEEEEEEeCCCCeEEEeEEEeccc---cCCceEECCCCCEEEEEEccCCcE
Confidence 1235566666644332221 1221 23344443 46899999888999
Q ss_pred EEeeCC
Q 017317 366 GKLPLK 371 (373)
Q Consensus 366 ~~~~l~ 371 (373)
..++++
T Consensus 299 ~v~~~~ 304 (330)
T PRK11028 299 SVYEID 304 (330)
T ss_pred EEEEEc
Confidence 998875
No 14
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=2.1e-09 Score=95.40 Aligned_cols=243 Identities=14% Similarity=0.204 Sum_probs=156.4
Q ss_pred cCCcceEEEecCC-CEEEEec---CCeEEE--EEc-CCceEEeee--ecCcc-ccCeEECCCCc-EEEEECCCcEEEEe-
Q 017317 76 LNGPEDVCVDRNG-VLYTATR---DGWIKR--LHK-NGTWENWKL--IGGDT-LLGITTTQENE-ILVCDADKGLLKVT- 143 (373)
Q Consensus 76 ~~~P~~ia~d~~G-~l~v~~~---~g~I~~--~~~-~g~~~~~~~--~~~~p-~~gl~~d~~g~-L~va~~~~gl~~~~- 143 (373)
+..|.-|++++++ .||++.. .|+|.. +|+ +|+.+.... ..+.| . .+++|++|+ |++|.+..|.+.+.
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~-yvsvd~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC-YVSVDEDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe-EEEECCCCCEEEEEEccCceEEEEE
Confidence 6889999999976 7897653 577754 443 477765532 23444 6 999999996 67788776655554
Q ss_pred --cCC-cEEEe----eccCC--cc--ccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEE
Q 017317 144 --EEG-VTVLA----SHVNG--SR--INLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS 211 (373)
Q Consensus 144 --~~g-~~~l~----~~~~~--~~--~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~ 211 (373)
.+| +.... ....+ .. ...+....++|+|+ |++.|-+ .-+|+.|+-+.++.+
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-----------------~Dri~~y~~~dg~L~ 180 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-----------------TDRIFLYDLDDGKLT 180 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-----------------CceEEEEEcccCccc
Confidence 356 43221 11111 11 11255677899995 5555543 346776666556544
Q ss_pred Ee----ecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCC---------ceeECCCCCEE
Q 017317 212 IL----LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPD---------NIKLAPDGSFW 278 (373)
Q Consensus 212 ~~----~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~---------~i~~d~dG~lw 278 (373)
.. ......|.-|+|+|+++..|+....++.|..|..++. .++++... ....+|. .|.+++||++.
T Consensus 181 ~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ-~i~tlP~dF~g~~~~aaIhis~dGrFL 258 (346)
T COG2706 181 PADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQ-TIDTLPEDFTGTNWAAAIHISPDGRFL 258 (346)
T ss_pred cccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEee-eeccCccccCCCCceeEEEECCCCCEE
Confidence 32 2445667889999999999999999999998887653 34443332 1222222 36789999977
Q ss_pred EEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEE--eCCCCceecceeEEEE--eCCE
Q 017317 279 IAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKF--EDPNGKVMSFVTSALE--FDDH 354 (373)
Q Consensus 279 va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~--~~~~g~~~~~~~~~~~--~~g~ 354 (373)
.+++.+.+ .-.++.++++|..+... ..-.|. .+..+.. +++.
T Consensus 259 YasNRg~d-------------------------------sI~~f~V~~~~g~L~~~~~~~teg~---~PR~F~i~~~g~~ 304 (346)
T COG2706 259 YASNRGHD-------------------------------SIAVFSVDPDGGKLELVGITPTEGQ---FPRDFNINPSGRF 304 (346)
T ss_pred EEecCCCC-------------------------------eEEEEEEcCCCCEEEEEEEeccCCc---CCccceeCCCCCE
Confidence 77665532 23478889887765543 233332 3444444 4578
Q ss_pred EEEeeCCCCeEEEeeCCC
Q 017317 355 LYLGSLNTNFIGKLPLKA 372 (373)
Q Consensus 355 L~vgs~~~~~i~~~~l~~ 372 (373)
|++.+-.+|.|.+|.++.
T Consensus 305 Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 305 LIAANQKSDNITVFERDK 322 (346)
T ss_pred EEEEccCCCcEEEEEEcC
Confidence 999999999999998764
No 15
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.38 E-value=3.3e-11 Score=111.26 Aligned_cols=159 Identities=23% Similarity=0.302 Sum_probs=97.3
Q ss_pred cCCcceEEEecCCCEEEEecCCeEEEEEcCCce-EEeeee-------cCccccCeEECCC----CcEEEEECC-------
Q 017317 76 LNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTW-ENWKLI-------GGDTLLGITTTQE----NEILVCDAD------- 136 (373)
Q Consensus 76 ~~~P~~ia~d~~G~l~v~~~~g~I~~~~~~g~~-~~~~~~-------~~~p~~gl~~d~~----g~L~va~~~------- 136 (373)
|..|++|++.|+|++|++...|+|++++.+|.. ..+... ....+ ||+++++ +.||++...
T Consensus 1 L~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gll-gia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 1 LNNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLL-GIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp ESSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEE-EEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CCCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcc-cceeccccCCCCEEEEEEEcccCCCCC
Confidence 467999999999999999999999999977765 332221 12357 9999984 889998542
Q ss_pred --CcEEEEe-c-C-C----cEEEeeccCC--ccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeC
Q 017317 137 --KGLLKVT-E-E-G----VTVLASHVNG--SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP 205 (373)
Q Consensus 137 --~gl~~~~-~-~-g----~~~l~~~~~~--~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 205 (373)
..|.++. . . . .+.+...... ...+....|+++|||.|||+.+.... ....++. ....|.|+|+++
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~~~--~~~~G~ilri~~ 155 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQDP--NSLRGKILRIDP 155 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGCST--TSSTTEEEEEET
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--ccccccc--ccccceEEEecc
Confidence 2466666 2 2 1 2333332222 34456678999999999999765221 1111111 223578889887
Q ss_pred CCC-------------eEEEeecCCCCcceEEEccCCCEEEEEeCCC
Q 017317 206 SLN-------------ETSILLDSLFFANGVALSKDEDYLVVCETFK 239 (373)
Q Consensus 206 ~~~-------------~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~ 239 (373)
++. ..+.++.++++|.+++|++....||+++.+.
T Consensus 156 dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~ 202 (331)
T PF07995_consen 156 DGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGP 202 (331)
T ss_dssp TSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-S
T ss_pred cCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCC
Confidence 754 3455677778888888887722366666443
No 16
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=99.38 E-value=2.9e-09 Score=100.53 Aligned_cols=171 Identities=18% Similarity=0.187 Sum_probs=114.1
Q ss_pred ceeEeccCCcCCcceEEEecCCCEEEEec-CCeEEEEEcC-CceEEee-------e-ecCccccCeEECCC-------Cc
Q 017317 67 SVTRLGEGILNGPEDVCVDRNGVLYTATR-DGWIKRLHKN-GTWENWK-------L-IGGDTLLGITTTQE-------NE 129 (373)
Q Consensus 67 ~~~~~~~g~~~~P~~ia~d~~G~l~v~~~-~g~I~~~~~~-g~~~~~~-------~-~~~~p~~gl~~d~~-------g~ 129 (373)
+++.+++| +..|++|++.++|++||+.. .|+|++++.+ +..+.+. . ..+.++ ||+++++ +.
T Consensus 21 ~~~~va~G-L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLl-glal~PdF~~~~~n~~ 98 (454)
T TIGR03606 21 DKKVLLSG-LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLL-GLALHPDFMQEKGNPY 98 (454)
T ss_pred EEEEEECC-CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCcee-eEEECCCccccCCCcE
Confidence 56778877 89999999999999999997 5999999843 3322211 1 234567 9999865 35
Q ss_pred EEEEE----------CCCcEEEEe-c-C-C----cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccc------cc
Q 017317 130 ILVCD----------ADKGLLKVT-E-E-G----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGL------HN 186 (373)
Q Consensus 130 L~va~----------~~~gl~~~~-~-~-g----~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~------~~ 186 (373)
||++- ....|.|+. . . . .+.+....+....+.-..|++++||.|||+........ ..
T Consensus 99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~ 178 (454)
T TIGR03606 99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPN 178 (454)
T ss_pred EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcc
Confidence 89873 123577765 2 1 1 23344433333446667899999999999976532110 00
Q ss_pred cccc------c---ccccCCceEEEEeCCCC-----------eEEEeecCCCCcceEEEccCCCEEEEEeCCCC
Q 017317 187 WGLD------L---LEAKPHGKLLKYDPSLN-----------ETSILLDSLFFANGVALSKDEDYLVVCETFKF 240 (373)
Q Consensus 187 ~~~~------~---~~~~~~g~l~~~d~~~~-----------~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~ 240 (373)
..+. . ......|.|+|+|+++. +.+++..++++|.|++|+|+|+ ||++|-+..
T Consensus 179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~~e~Gp~ 251 (454)
T TIGR03606 179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYASEQGPN 251 (454)
T ss_pred hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEEEecCCC
Confidence 0110 0 11234689999998854 2356788999999999999876 999987653
No 17
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.33 E-value=8.2e-09 Score=96.24 Aligned_cols=229 Identities=17% Similarity=0.254 Sum_probs=141.8
Q ss_pred EEEEecC----CeEEEEE---cCCceEEee--eecCccccCeEECCCCc-EEEEECC----CcEEEEe--cC-C-cEEEe
Q 017317 90 LYTATRD----GWIKRLH---KNGTWENWK--LIGGDTLLGITTTQENE-ILVCDAD----KGLLKVT--EE-G-VTVLA 151 (373)
Q Consensus 90 l~v~~~~----g~I~~~~---~~g~~~~~~--~~~~~p~~gl~~d~~g~-L~va~~~----~gl~~~~--~~-g-~~~l~ 151 (373)
+|+|+.. ++|+.+. .+|+.+... .....|. -|+++++++ ||++... .++..+. ++ | ++.+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps-~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPS-WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSEC-CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCc-eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 6888855 6887666 455554433 3467888 999998874 8888653 3565554 44 7 66665
Q ss_pred eccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceE--EEEeCCCCeEEEe---e-----------
Q 017317 152 SHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKL--LKYDPSLNETSIL---L----------- 214 (373)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l--~~~d~~~~~~~~~---~----------- 214 (373)
.... ....|..++++++|+ ||++... .|.+ +.++.+ +..... .
T Consensus 81 ~~~~--~g~~p~~i~~~~~g~~l~vany~-----------------~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~r 140 (345)
T PF10282_consen 81 SVPS--GGSSPCHIAVDPDGRFLYVANYG-----------------GGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDR 140 (345)
T ss_dssp EEEE--SSSCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTT-SEEEEEEEEEESEEEESSTTT
T ss_pred eecc--CCCCcEEEEEecCCCEEEEEEcc-----------------CCeEEEEEccCC-cccceeeeecccCCCCCcccc
Confidence 4321 124577899999985 7887643 2445 444443 443322 1
Q ss_pred cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCC--CcceeEEecCCCCCCCceeECCCCC-EEEEEecCCCchhhh
Q 017317 215 DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGES--KEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQLSSPGLEF 291 (373)
Q Consensus 215 ~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~~~~~~~~~~ 291 (373)
.....|+.+.++|||+++|+++.+.++|+.|+++... +.....+.-.....|+.++++++|+ +|+......
T Consensus 141 q~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~------ 214 (345)
T PF10282_consen 141 QEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSN------ 214 (345)
T ss_dssp TSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTT------
T ss_pred cccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCC------
Confidence 1235678899999999999999999999999987643 3222222212334699999999996 677764331
Q ss_pred ccCChHHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcE--EEEEeC-CCC-ceecceeEEEEe--CCEEEEeeCCCCe
Q 017317 292 VHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIV--IRKFED-PNG-KVMSFVTSALEF--DDHLYLGSLNTNF 364 (373)
Q Consensus 292 ~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~--~~~~~~-~~g-~~~~~~~~~~~~--~g~L~vgs~~~~~ 364 (373)
...++.++ .+|+. +..+.. +.+ ........+..+ +..||+++...|.
T Consensus 215 --------------------------~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s 268 (345)
T PF10282_consen 215 --------------------------TVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS 268 (345)
T ss_dssp --------------------------EEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred --------------------------cEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence 23456666 45543 222222 111 111256677766 3589999999999
Q ss_pred EEEeeCC
Q 017317 365 IGKLPLK 371 (373)
Q Consensus 365 i~~~~l~ 371 (373)
|..++++
T Consensus 269 I~vf~~d 275 (345)
T PF10282_consen 269 ISVFDLD 275 (345)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 9999984
No 18
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.27 E-value=1.9e-08 Score=93.22 Aligned_cols=173 Identities=12% Similarity=0.110 Sum_probs=109.4
Q ss_pred CEEEEe-cCCeEEEEEc--CCceEEee--eecCccccCeEECCCCc-EEEEEC-CCcEEEEe--cCC-cEEEeeccCCcc
Q 017317 89 VLYTAT-RDGWIKRLHK--NGTWENWK--LIGGDTLLGITTTQENE-ILVCDA-DKGLLKVT--EEG-VTVLASHVNGSR 158 (373)
Q Consensus 89 ~l~v~~-~~g~I~~~~~--~g~~~~~~--~~~~~p~~gl~~d~~g~-L~va~~-~~gl~~~~--~~g-~~~l~~~~~~~~ 158 (373)
.+|++. .++.|..++. +|+.+... ...+.+. .++++++|+ ||++.. ..++..++ ++| ++.......+
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~-~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~-- 79 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQ-PMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP-- 79 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCc-cEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCC--
Confidence 478775 5778888883 45544322 2346788 999999986 788754 35676665 356 5544322111
Q ss_pred ccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCC-CeE---EEeecCCCCcceEEEccCCCEEE
Q 017317 159 INLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NET---SILLDSLFFANGVALSKDEDYLV 233 (373)
Q Consensus 159 ~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~---~~~~~~~~~~~gi~~~~dg~~l~ 233 (373)
..|..++++++|+ +|++... .+.|..|+.++ +.. .....+...|.+++++|+++++|
T Consensus 80 -~~p~~i~~~~~g~~l~v~~~~-----------------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~ 141 (330)
T PRK11028 80 -GSPTHISTDHQGRFLFSASYN-----------------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLW 141 (330)
T ss_pred -CCceEEEECCCCCEEEEEEcC-----------------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEE
Confidence 2467899999995 6776532 35566565432 211 11123446689999999999999
Q ss_pred EEeCCCCeEEEEEecCCC-Ccc--eeEEecCCCCCCCceeECCCCC-EEEEEe
Q 017317 234 VCETFKFRCLKYWLKGES-KEQ--TEIFVENLPGGPDNIKLAPDGS-FWIAIL 282 (373)
Q Consensus 234 v~~~~~~~i~~~~~~~~~-~~~--~~~~~~~~~g~p~~i~~d~dG~-lwva~~ 282 (373)
+++...+.|..|+++... ... ...........|..++++++|+ +|+++.
T Consensus 142 v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 142 VPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred EeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec
Confidence 999999999999986421 110 0011111234689999999997 567654
No 19
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=99.26 E-value=1.4e-08 Score=93.87 Aligned_cols=171 Identities=16% Similarity=0.146 Sum_probs=104.5
Q ss_pred ceeEeccCCcCCcceEEEecCCCEEEEecC-CeEEEEEcCC--------ceEEe----------------eeecCccccC
Q 017317 67 SVTRLGEGILNGPEDVCVDRNGVLYTATRD-GWIKRLHKNG--------TWENW----------------KLIGGDTLLG 121 (373)
Q Consensus 67 ~~~~~~~g~~~~P~~ia~d~~G~l~v~~~~-g~I~~~~~~g--------~~~~~----------------~~~~~~p~~g 121 (373)
..+.+++| +..|+.++..++|.+.+.... |.+..+...+ ..... +.....+. +
T Consensus 58 ~~~~~a~g-Le~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~-~ 135 (399)
T COG2133 58 SVEVVAQG-LEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYF-G 135 (399)
T ss_pred eccccccc-ccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeee-E
Confidence 45566677 899999999999965565544 6665554211 11111 11112344 5
Q ss_pred eEECCCCcEEEEECCCcEEEEe-cCC----cEEEeeccCCccccccceeEEcCCCcEEEEeCCcccccccccc-----cc
Q 017317 122 ITTTQENEILVCDADKGLLKVT-EEG----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGL-----DL 191 (373)
Q Consensus 122 l~~d~~g~L~va~~~~gl~~~~-~~g----~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~-----~~ 191 (373)
++. ..+.+|+++. ..+.+++ .+. .+.+....++...++-..|+++|||.|||+..+.......... .+
T Consensus 136 ~a~-~~~~~~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~ 213 (399)
T COG2133 136 ISE-PGGGLYVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKV 213 (399)
T ss_pred EEe-ecCCceEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCccccccce
Confidence 555 3556777764 3566666 211 2344455555456778899999999999997653111111111 11
Q ss_pred ccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeE
Q 017317 192 LEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRC 242 (373)
Q Consensus 192 ~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i 242 (373)
++. ....++..|+.+...+++..++.+|.|++|+|....||+++.+...+
T Consensus 214 ~r~-~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~ 263 (399)
T COG2133 214 LRI-DRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDAL 263 (399)
T ss_pred eee-ccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcc
Confidence 111 12345666666666677888999999999999955699999877444
No 20
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=1.7e-08 Score=89.71 Aligned_cols=189 Identities=18% Similarity=0.271 Sum_probs=121.8
Q ss_pred CCcceEEEecCCC-EEEEec-CCeEEEEE--cCCceEE----eeeecC---------ccccCeEECCCCc-EEEEECC-C
Q 017317 77 NGPEDVCVDRNGV-LYTATR-DGWIKRLH--KNGTWEN----WKLIGG---------DTLLGITTTQENE-ILVCDAD-K 137 (373)
Q Consensus 77 ~~P~~ia~d~~G~-l~v~~~-~g~I~~~~--~~g~~~~----~~~~~~---------~p~~gl~~d~~g~-L~va~~~-~ 137 (373)
..|..+++|++|+ |+++.. .|.|.++. .+|.... +..... .++ ...++++|+ |+++|-+ .
T Consensus 89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H-~a~~tP~~~~l~v~DLG~D 167 (346)
T COG2706 89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVH-SANFTPDGRYLVVPDLGTD 167 (346)
T ss_pred CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccc-eeeeCCCCCEEEEeecCCc
Confidence 4568899999885 557764 45565554 4564321 111111 245 667889995 6666654 3
Q ss_pred cEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee
Q 017317 138 GLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214 (373)
Q Consensus 138 gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~ 214 (373)
.++.++ .+| ++...... -.+..+|..|+|.|+|. .|+... ....-.+|.||+..++++.+.
T Consensus 168 ri~~y~~~dg~L~~~~~~~-v~~G~GPRHi~FHpn~k~aY~v~E---------------L~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAE-VKPGAGPRHIVFHPNGKYAYLVNE---------------LNSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred eEEEEEcccCccccccccc-cCCCCCcceEEEcCCCcEEEEEec---------------cCCEEEEEEEcCCCceEEEee
Confidence 566666 667 54432211 13445789999999996 577652 223345778888777777653
Q ss_pred c---------CCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEe-cCCCC-CCCceeECCCCCEEEEEec
Q 017317 215 D---------SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFV-ENLPG-GPDNIKLAPDGSFWIAILQ 283 (373)
Q Consensus 215 ~---------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~g-~p~~i~~d~dG~lwva~~~ 283 (373)
. +......|.+++||++||+++.+.+.|..|.++... +..+.+. ....| .|+.+.+++.|++.++...
T Consensus 232 ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~-g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 232 TIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG-GKLELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred eeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC-CEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 2 223345688999999999999999999998876431 2222211 12334 5999999999998888765
No 21
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.19 E-value=1.1e-09 Score=102.43 Aligned_cols=141 Identities=16% Similarity=0.130 Sum_probs=90.0
Q ss_pred ceEEEecCCCEEEEecCCeEEEEE-cCCceEEeeeecC--ccccCeEECCCCcEEEEECCCcEEEEecCCcEEEeeccCC
Q 017317 80 EDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGG--DTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNG 156 (373)
Q Consensus 80 ~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~--~p~~gl~~d~~g~L~va~~~~gl~~~~~~g~~~l~~~~~~ 156 (373)
..+..|..|++|+|+.+| +++|+ ..|+.-....... ... .+..|..|+|||++. .|++..++.|.+.. .....
T Consensus 168 ~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~-al~~d~qg~LWVGTd-qGv~~~e~~G~~~s-n~~~~ 243 (671)
T COG3292 168 VALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAIN-ALIADVQGRLWVGTD-QGVYLQEAEGWRAS-NWGPM 243 (671)
T ss_pred eeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHH-HHHHHhcCcEEEEec-cceEEEchhhcccc-ccCCC
Confidence 457888999999999876 88887 4555443333222 234 777889999999985 78999885551111 11122
Q ss_pred ccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee----cCCCCcceEEEccCCCEE
Q 017317 157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL----DSLFFANGVALSKDEDYL 232 (373)
Q Consensus 157 ~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~----~~~~~~~gi~~~~dg~~l 232 (373)
.+...+..+..|.+|.+||++.. +++|+........... .+....+++..+.||+ |
T Consensus 244 lp~~~I~ll~qD~qG~lWiGTen-------------------Gl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-L 303 (671)
T COG3292 244 LPSGNILLLVQDAQGELWIGTEN-------------------GLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-L 303 (671)
T ss_pred CcchheeeeecccCCCEEEeecc-------------------cceeEecCCCCccccccccCCccccccceeeccCCC-E
Confidence 33345667788999999999753 4666554433333221 1223346788888887 8
Q ss_pred EEEeCCCCeEEEEE
Q 017317 233 VVCETFKFRCLKYW 246 (373)
Q Consensus 233 ~v~~~~~~~i~~~~ 246 (373)
|+.+. +++.+|.
T Consensus 304 Wv~t~--~giv~~~ 315 (671)
T COG3292 304 WVGTY--GGIVRYL 315 (671)
T ss_pred eeecc--CceEEEe
Confidence 88754 4566654
No 22
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.17 E-value=6.6e-09 Score=97.58 Aligned_cols=208 Identities=16% Similarity=0.157 Sum_probs=122.3
Q ss_pred cceeEeccCCcCCcceEEEecCCCEEEEecCCeEEEEE-cCC------ceEEeeee--------cCccccCeEECCCCcE
Q 017317 66 QSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLH-KNG------TWENWKLI--------GGDTLLGITTTQENEI 130 (373)
Q Consensus 66 ~~~~~~~~g~~~~P~~ia~d~~G~l~v~~~~g~I~~~~-~~g------~~~~~~~~--------~~~p~~gl~~d~~g~L 130 (373)
.+.+.+.++ +..|.+|++.++| ||+++. ..|+++. .++ +.+.+... ...++ ++++++||.|
T Consensus 62 d~~~vfa~~-l~~p~Gi~~~~~G-lyV~~~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~-~l~~gpDG~L 137 (367)
T TIGR02604 62 DKSNVFAEE-LSMVTGLAVAVGG-VYVATP-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLN-SLAWGPDGWL 137 (367)
T ss_pred ceeEEeecC-CCCccceeEecCC-EEEeCC-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCccccccc-CceECCCCCE
Confidence 344555555 7889999999888 999764 5688884 322 44444321 12366 9999999999
Q ss_pred EEEECC--------------------CcEEEEecCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccc
Q 017317 131 LVCDAD--------------------KGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWG 188 (373)
Q Consensus 131 ~va~~~--------------------~gl~~~~~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~ 188 (373)
|++... .+++++++++ .++++. .+..+++++++++|++|+++.... .....
T Consensus 138 Yv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~-----G~rnp~Gl~~d~~G~l~~tdn~~~--~~~~i 210 (367)
T TIGR02604 138 YFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH-----GFQNPYGHSVDSWGDVFFCDNDDP--PLCRV 210 (367)
T ss_pred EEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec-----CcCCCccceECCCCCEEEEccCCC--ceeEE
Confidence 997541 2478888544 565543 356789999999999999976321 11111
Q ss_pred cccccccCCceEEE-----EeCCCC---eE---------------EEeecCCCCcceEEEcc-------CCCEEEEEeCC
Q 017317 189 LDLLEAKPHGKLLK-----YDPSLN---ET---------------SILLDSLFFANGVALSK-------DEDYLVVCETF 238 (373)
Q Consensus 189 ~~~~~~~~~g~l~~-----~d~~~~---~~---------------~~~~~~~~~~~gi~~~~-------dg~~l~v~~~~ 238 (373)
..+.+....|..+. .++... +. .........|.|+++.. -...+++++..
T Consensus 211 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~ 290 (367)
T TIGR02604 211 TPVAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAH 290 (367)
T ss_pred cccccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeecc
Confidence 11111100010000 000000 00 00011223578888873 22348999998
Q ss_pred CCeEEEEEecCCC--Cc-ceeEEecCCC--CCCCceeECCCCCEEEEEecC
Q 017317 239 KFRCLKYWLKGES--KE-QTEIFVENLP--GGPDNIKLAPDGSFWIAILQL 284 (373)
Q Consensus 239 ~~~i~~~~~~~~~--~~-~~~~~~~~~~--g~p~~i~~d~dG~lwva~~~~ 284 (373)
.++|.++.++... .. +...+..... +.|..+.+++||.|||+++-.
T Consensus 291 ~~~v~~~~l~~~g~~~~~~~~~~l~~~~~~~rp~dv~~~pDG~Lyv~d~~~ 341 (367)
T TIGR02604 291 GQLIVRYSLEPKGAGFKGERPEFLRSNDTWFRPVNVTVGPDGALYVSDWYD 341 (367)
T ss_pred CCEEEEEEeecCCCccEeecCceEecCCCcccccceeECCCCCEEEEEecc
Confidence 9999999876321 21 1122322211 578899999999999999743
No 23
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.16 E-value=2e-07 Score=84.50 Aligned_cols=234 Identities=15% Similarity=0.096 Sum_probs=138.4
Q ss_pred CCcceEEEecCCC-EEEE-ecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECC-CcEEEEe-cCC--cE
Q 017317 77 NGPEDVCVDRNGV-LYTA-TRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-EEG--VT 148 (373)
Q Consensus 77 ~~P~~ia~d~~G~-l~v~-~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~-~gl~~~~-~~g--~~ 148 (373)
..|.+++++++|. +|+. ..++.|..++ .+++..........+. .++++++|+ +|++... +.+..++ .++ +.
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~ 109 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPE-LFALHPNGKILYIANEDDNLVTVIDIETRKVLA 109 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCcc-EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe
Confidence 4578899999886 5654 4678899998 4455433222234466 788998886 6666443 4566677 444 22
Q ss_pred EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccC
Q 017317 149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228 (373)
Q Consensus 149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~d 228 (373)
.+. .+ ..+.+++++++|.+++.... ....++.+|..+++..........+..+++++|
T Consensus 110 ~~~---~~---~~~~~~~~~~dg~~l~~~~~----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~d 167 (300)
T TIGR03866 110 EIP---VG---VEPEGMAVSPDGKIVVNTSE----------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTAD 167 (300)
T ss_pred Eee---CC---CCcceEEECCCCCEEEEEec----------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCC
Confidence 221 11 23678999999987665432 112456678776654432222345788999999
Q ss_pred CCEEEEEeCCCCeEEEEEecCCCCcceeEEec-C---CCCCCCceeECCCCCE-EEEEecCCCchhhhccCChHHHHHHH
Q 017317 229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVE-N---LPGGPDNIKLAPDGSF-WIAILQLSSPGLEFVHTSKATKHLLA 303 (373)
Q Consensus 229 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~---~~g~p~~i~~d~dG~l-wva~~~~~~~~~~~~~~~p~~~~~~~ 303 (373)
++.++++....+.+..|++...+......+.. . ....|.+++++++|+. |++....
T Consensus 168 g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~------------------- 228 (300)
T TIGR03866 168 GKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA------------------- 228 (300)
T ss_pred CCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC-------------------
Confidence 99888876667789999876432211101110 0 1123567889999975 6654332
Q ss_pred hcchhhhhccCCCccEEEEEECC-CCcEEEEEeCCCCceecceeEEEEe--CCEEEEeeCCCCeEEEeeCCC
Q 017317 304 AFPKLIKLVAPLHKKAAVVNVAA-NGIVIRKFEDPNGKVMSFVTSALEF--DDHLYLGSLNTNFIGKLPLKA 372 (373)
Q Consensus 304 ~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~vgs~~~~~i~~~~l~~ 372 (373)
..+..+|. +++....+.. + ..+..+... +..||+++..++.|.++++..
T Consensus 229 ---------------~~i~v~d~~~~~~~~~~~~--~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 229 ---------------NRVAVVDAKTYEVLDYLLV--G---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred ---------------CeEEEEECCCCcEEEEEEe--C---CCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 12455554 3555444321 1 124445543 357887766667788888763
No 24
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=4.9e-09 Score=94.83 Aligned_cols=146 Identities=16% Similarity=0.244 Sum_probs=103.8
Q ss_pred cCCcceEEEecCCCEEEEecC------------CeEEEEEcCCceEEeeee-cCccccCeEECCCC-cEEEEECC-CcEE
Q 017317 76 LNGPEDVCVDRNGVLYTATRD------------GWIKRLHKNGTWENWKLI-GGDTLLGITTTQEN-EILVCDAD-KGLL 140 (373)
Q Consensus 76 ~~~P~~ia~d~~G~l~v~~~~------------g~I~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g-~L~va~~~-~gl~ 140 (373)
...|..+.++++|++|+++.. |.|+++++.|+.+..... ...++ ||++++|| .||+++.. +.++
T Consensus 110 ~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~N-Gla~SpDg~tly~aDT~~~~i~ 188 (307)
T COG3386 110 LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPN-GLAFSPDGKTLYVADTPANRIH 188 (307)
T ss_pred cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecC-ceEECCCCCEEEEEeCCCCeEE
Confidence 567889999999999998754 579999987776665544 66789 99999999 69999876 5678
Q ss_pred EEe-c--CC-c--E-EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe
Q 017317 141 KVT-E--EG-V--T-VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL 213 (373)
Q Consensus 141 ~~~-~--~g-~--~-~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~ 213 (373)
+++ . ++ . + .... .. .....|.++++|.+|++|++... ..++|.+++|+++....+
T Consensus 189 r~~~d~~~g~~~~~~~~~~-~~-~~~G~PDG~~vDadG~lw~~a~~----------------~g~~v~~~~pdG~l~~~i 250 (307)
T COG3386 189 RYDLDPATGPIGGRRGFVD-FD-EEPGLPDGMAVDADGNLWVAAVW----------------GGGRVVRFNPDGKLLGEI 250 (307)
T ss_pred EEecCcccCccCCcceEEE-cc-CCCCCCCceEEeCCCCEEEeccc----------------CCceEEEECCCCcEEEEE
Confidence 886 3 23 1 1 1111 11 12236889999999999975322 124899999996555555
Q ss_pred ecCCCCcceEEEc-cCCCEEEEEeCCCC
Q 017317 214 LDSLFFANGVALS-KDEDYLVVCETFKF 240 (373)
Q Consensus 214 ~~~~~~~~gi~~~-~dg~~l~v~~~~~~ 240 (373)
.-....+...+|- ++.+.|||+....+
T Consensus 251 ~lP~~~~t~~~FgG~~~~~L~iTs~~~~ 278 (307)
T COG3386 251 KLPVKRPTNPAFGGPDLNTLYITSARSG 278 (307)
T ss_pred ECCCCCCccceEeCCCcCEEEEEecCCC
Confidence 5444666667764 67788999876553
No 25
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=99.08 E-value=4e-08 Score=88.61 Aligned_cols=187 Identities=16% Similarity=0.179 Sum_probs=115.8
Q ss_pred CeEECCCCcEEEEECCC-------------cEEEEe-cCC--cEEEe-eccCCccccccceeEEcCC------CcEEEEe
Q 017317 121 GITTTQENEILVCDADK-------------GLLKVT-EEG--VTVLA-SHVNGSRINLADDLIAATD------GSIYFSV 177 (373)
Q Consensus 121 gl~~d~~g~L~va~~~~-------------gl~~~~-~~g--~~~l~-~~~~~~~~~~~~~l~~~~d------G~l~v~~ 177 (373)
++.+|+.|+|||.|.+. .|+.+| .++ ++.+. ....-.+..+.+++++|.. +.+|++|
T Consensus 5 ~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD 84 (287)
T PF03022_consen 5 RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD 84 (287)
T ss_dssp EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE
T ss_pred EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC
Confidence 77888888898887542 477888 555 33321 1111123457889999862 5799999
Q ss_pred CCccccccccccccccccCCceEEEEeCCCCeEEEeecCCC--------------------CcceEEEcc---CCCEEEE
Q 017317 178 ASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF--------------------FANGVALSK---DEDYLVV 234 (373)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~--------------------~~~gi~~~~---dg~~l~v 234 (373)
.+ .++|..||..+++...+..... ...|+++++ |++.||+
T Consensus 85 ~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf 147 (287)
T PF03022_consen 85 SG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYF 147 (287)
T ss_dssp TT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEE
T ss_pred CC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEE
Confidence 75 3578888888777655443211 134677765 8889999
Q ss_pred EeCCCCeEEEEEec---CCCCc-------ceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHh
Q 017317 235 CETFKFRCLKYWLK---GESKE-------QTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAA 304 (373)
Q Consensus 235 ~~~~~~~i~~~~~~---~~~~~-------~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~ 304 (373)
.-.....+++...+ .+... .++.+. ...+..+++++|++|+||++....
T Consensus 148 ~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~~G~ly~~~~~~-------------------- 206 (287)
T PF03022_consen 148 HPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDPNGNLYFTDVEQ-------------------- 206 (287)
T ss_dssp EETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEETTTEEEEEECCC--------------------
T ss_pred EeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECCCCcEEEecCCC--------------------
Confidence 99888889888632 22211 122222 233456899999999999998764
Q ss_pred cchhhhhccCCCccEEEEEECCCC-----cEEEEEeCCCCceecceeEEEEeC---CEEEEeeCC
Q 017317 305 FPKLIKLVAPLHKKAAVVNVAANG-----IVIRKFEDPNGKVMSFVTSALEFD---DHLYLGSLN 361 (373)
Q Consensus 305 ~~~~~~~~~~~~~~g~v~~~~~~g-----~~~~~~~~~~g~~~~~~~~~~~~~---g~L~vgs~~ 361 (373)
..|.++++++ +.....+++.. ..++.++...+ |+||+-+..
T Consensus 207 --------------~aI~~w~~~~~~~~~~~~~l~~d~~~--l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 207 --------------NAIGCWDPDGPYTPENFEILAQDPRT--LQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp --------------TEEEEEETTTSB-GCCEEEEEE-CC---GSSEEEEEE-T--TS-EEEEE-S
T ss_pred --------------CeEEEEeCCCCcCccchheeEEcCce--eeccceeeeccccCceEEEEECc
Confidence 2588999888 44455566553 46788888766 899998854
No 26
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.05 E-value=1.9e-09 Score=100.81 Aligned_cols=219 Identities=18% Similarity=0.223 Sum_probs=124.8
Q ss_pred CeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeeccCCccc-cccceeEEcCCCcEEEEeCCccccccccccccccccCC
Q 017317 121 GITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRI-NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH 197 (373)
Q Consensus 121 gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~~-~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~ 197 (373)
.+.+|..|+|||++. .|+++|+ ..| +-.+.. .++ ..++.+..|-+|++||++..
T Consensus 169 aLv~D~~g~lWvgT~-dGL~~fd~~~gkalql~s----~~~dk~I~al~~d~qg~LWVGTdq------------------ 225 (671)
T COG3292 169 ALVFDANGRLWVGTP-DGLSYFDAGRGKALQLAS----PPLDKAINALIADVQGRLWVGTDQ------------------ 225 (671)
T ss_pred eeeeeccCcEEEecC-CcceEEccccceEEEcCC----CcchhhHHHHHHHhcCcEEEEecc------------------
Confidence 889999999999985 7999999 555 333322 222 45788889999999999753
Q ss_pred ceEEEEeCCCCeEEEeecCCCCcce----EEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECC
Q 017317 198 GKLLKYDPSLNETSILLDSLFFANG----VALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP 273 (373)
Q Consensus 198 g~l~~~d~~~~~~~~~~~~~~~~~g----i~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~ 273 (373)
+++++++.+.+.... +...|.+ +.-|.+|. +|+... +++.++....+.......-..........+..|.
T Consensus 226 -Gv~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~-lWiGTe--nGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~ 299 (671)
T COG3292 226 -GVYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE-LWIGTE--NGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDT 299 (671)
T ss_pred -ceEEEchhhcccccc--CCCCcchheeeeecccCCC-EEEeec--ccceeEecCCCCccccccccCCccccccceeecc
Confidence 789998876443322 2333433 23345554 777643 4577776544332211111101112346688999
Q ss_pred CCCEEEEEecCCCch-----hh--hccCChHHH-HHHHhcchhhhh-ccCCCccEEEEEEC-CCCcEEEEEeCCCCceec
Q 017317 274 DGSFWIAILQLSSPG-----LE--FVHTSKATK-HLLAAFPKLIKL-VAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMS 343 (373)
Q Consensus 274 dG~lwva~~~~~~~~-----~~--~~~~~p~~~-~~~~~~~~~~~~-~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~ 343 (373)
+|++|+++..+.-.. .. ++.+.+-.- ....-.|..+.+ ..+....|.++..+ ..|..+.+.+...|.
T Consensus 300 dGsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~--- 376 (671)
T COG3292 300 DGSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGM--- 376 (671)
T ss_pred CCCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeecccc---
Confidence 999999998753111 00 011111111 111112222221 11223333444444 567777776655553
Q ss_pred ceeEEEEe-CCEEEEeeCCCCeEEEeeCCC
Q 017317 344 FVTSALEF-DDHLYLGSLNTNFIGKLPLKA 372 (373)
Q Consensus 344 ~~~~~~~~-~g~L~vgs~~~~~i~~~~l~~ 372 (373)
.++.++++ ++.+|+||. ++.++|++...
T Consensus 377 nit~~~~d~~g~lWlgs~-q~GLsrl~n~n 405 (671)
T COG3292 377 NITTTLEDSRGRLWLGSM-QNGLSRLDNKN 405 (671)
T ss_pred ccchhhhccCCcEEEEec-ccchhhhccCC
Confidence 35555554 689999997 56688887653
No 27
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.03 E-value=1.6e-07 Score=95.08 Aligned_cols=183 Identities=17% Similarity=0.201 Sum_probs=120.8
Q ss_pred CcceEEEec-CCCEEEEe-cCCeEEEEEc------CCceEEeeee----------c-----------CccccCeEECCCC
Q 017317 78 GPEDVCVDR-NGVLYTAT-RDGWIKRLHK------NGTWENWKLI----------G-----------GDTLLGITTTQEN 128 (373)
Q Consensus 78 ~P~~ia~d~-~G~l~v~~-~~g~I~~~~~------~g~~~~~~~~----------~-----------~~p~~gl~~d~~g 128 (373)
.-..||++| +|.||+.+ ..-+|+++.. .+.++.++.. | ..|. ||++|++|
T Consensus 408 h~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~Pk-GIa~dk~g 486 (1899)
T KOG4659|consen 408 HSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPK-GIAFDKMG 486 (1899)
T ss_pred ceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCC-ceeEccCC
Confidence 344599999 99999876 5567888861 2234444321 2 2478 99999999
Q ss_pred cEEEEECCCcEEEEecCC-cEEEeec---------------cCCccccccceeEEcC-CCcEEEEeCCcccccccccccc
Q 017317 129 EILVCDADKGLLKVTEEG-VTVLASH---------------VNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDL 191 (373)
Q Consensus 129 ~L~va~~~~gl~~~~~~g-~~~l~~~---------------~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~ 191 (373)
.||.+|. ..|..+|.+| +..+... .....+..|.+|+++| |+.+||-|.
T Consensus 487 ~lYfaD~-t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~------------- 552 (1899)
T KOG4659|consen 487 NLYFADG-TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT------------- 552 (1899)
T ss_pred cEEEecc-cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec-------------
Confidence 9999996 5677788888 6544321 1123566899999998 789999975
Q ss_pred ccccCCceEEEEeCCCCeEEEeecC---------------------CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC
Q 017317 192 LEAKPHGKLLKYDPSLNETSILLDS---------------------LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE 250 (373)
Q Consensus 192 ~~~~~~g~l~~~d~~~~~~~~~~~~---------------------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~ 250 (373)
.-|+++++. .++..++.. +..+..|+++++|. |||+|+...+|-+...-+.
T Consensus 553 ------nvvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rriNrvr~~~t 624 (1899)
T KOG4659|consen 553 ------NVVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRRINRVRKLST 624 (1899)
T ss_pred ------ceEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEeccchhhhheEEecc
Confidence 467777765 455443221 22346799999997 9999998766555432110
Q ss_pred CCcceeEEec-------------------------CCCCCCCceeECCCCCEEEEEecC
Q 017317 251 SKEQTEIFVE-------------------------NLPGGPDNIKLAPDGSFWIAILQL 284 (373)
Q Consensus 251 ~~~~~~~~~~-------------------------~~~g~p~~i~~d~dG~lwva~~~~ 284 (373)
-+++..+.. ..-..|..+|+.+||.++||..+.
T Consensus 625 -dg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 625 -DGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred -CceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCc
Confidence 011111110 111247789999999999998764
No 28
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=6.2e-07 Score=84.64 Aligned_cols=187 Identities=20% Similarity=0.249 Sum_probs=126.5
Q ss_pred CCcceEEEecCC-CEEEEecC-CeEEEEEcC-CceEEeeeec-CccccCeEECCCCc-EEEEECC-CcEEEEe-cCCcEE
Q 017317 77 NGPEDVCVDRNG-VLYTATRD-GWIKRLHKN-GTWENWKLIG-GDTLLGITTTQENE-ILVCDAD-KGLLKVT-EEGVTV 149 (373)
Q Consensus 77 ~~P~~ia~d~~G-~l~v~~~~-g~I~~~~~~-g~~~~~~~~~-~~p~~gl~~d~~g~-L~va~~~-~gl~~~~-~~g~~~ 149 (373)
..|..+++.++| .+|+.... ..+..++.. ...+.....+ ..|. ++++.+.|+ +|+.+.. +.+..++ ..- +.
T Consensus 31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~-~i~v~~~~~~vyv~~~~~~~v~vid~~~~-~~ 108 (381)
T COG3391 31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPA-GVAVNPAGNKVYVTTGDSNTVSVIDTATN-TV 108 (381)
T ss_pred CCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCcccc-ceeeCCCCCeEEEecCCCCeEEEEcCccc-ce
Confidence 378999999977 88877633 345555422 1223222223 5688 999988885 9998754 4566666 222 12
Q ss_pred EeeccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccC
Q 017317 150 LASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228 (373)
Q Consensus 150 l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~d 228 (373)
......| ..|.+++++++| .+|+++... .++.+..+|..+++..........|.+++++|+
T Consensus 109 ~~~~~vG---~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~ 170 (381)
T COG3391 109 LGSIPVG---LGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPD 170 (381)
T ss_pred eeEeeec---cCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCC
Confidence 2111122 268899999998 899998631 247899999988876655444446899999999
Q ss_pred CCEEEEEeCCCCeEEEEEecCCCCcceeEE--ecCCCCCCCceeECCCCC-EEEEEecC
Q 017317 229 EDYLVVCETFKFRCLKYWLKGESKEQTEIF--VENLPGGPDNIKLAPDGS-FWIAILQL 284 (373)
Q Consensus 229 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~g~p~~i~~d~dG~-lwva~~~~ 284 (373)
|+.+|+++...+++..++.++..... ... .......|.++.++++|+ +|++....
T Consensus 171 g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 171 GNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred CCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 99999999889999999966543221 110 112345799999999997 78887653
No 29
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.00 E-value=1.9e-07 Score=94.59 Aligned_cols=182 Identities=18% Similarity=0.287 Sum_probs=123.1
Q ss_pred cCCcceEEEecCCCEEEEecCCeEEEEEcCCceEEeeeec----CccccCeEECC-CCcEEEEECC-CcEEEEe---c--
Q 017317 76 LNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIG----GDTLLGITTTQ-ENEILVCDAD-KGLLKVT---E-- 144 (373)
Q Consensus 76 ~~~P~~ia~d~~G~l~v~~~~g~I~~~~~~g~~~~~~~~~----~~p~~gl~~d~-~g~L~va~~~-~gl~~~~---~-- 144 (373)
+..|-.+|..+||.||+|+.+ -|.|+.++|++..+.... .... -||++| +|.|||.+.. +.++++. +
T Consensus 364 L~aPvala~a~DGSl~VGDfN-yIRRI~~dg~v~tIl~L~~t~~sh~Y-y~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d 441 (1899)
T KOG4659|consen 364 LFAPVALAYAPDGSLIVGDFN-YIRRISQDGQVSTILTLGLTDTSHSY-YIAVSPVDGTLYVSDPLSKQVWRVSSLEPQD 441 (1899)
T ss_pred eeceeeEEEcCCCcEEEccch-heeeecCCCceEEEEEecCCCcccee-EEEecCcCceEEecCCCcceEEEeccCCccc
Confidence 677999999999999999975 588998999887765432 2234 678885 8899999765 4577775 1
Q ss_pred -CC-cEEEeec----------------cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCC
Q 017317 145 -EG-VTVLASH----------------VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS 206 (373)
Q Consensus 145 -~g-~~~l~~~----------------~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 206 (373)
.+ .+.++.. .....+.+|.+|++|.+|.|||+|+. +|-.+|..
T Consensus 442 ~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t-------------------~IR~iD~~ 502 (1899)
T KOG4659|consen 442 SRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT-------------------RIRVIDTT 502 (1899)
T ss_pred cccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc-------------------EEEEeccC
Confidence 12 3444321 11235668999999999999999864 45555543
Q ss_pred CCeEEEee--------------------cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEec------
Q 017317 207 LNETSILL--------------------DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE------ 260 (373)
Q Consensus 207 ~~~~~~~~--------------------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~------ 260 (373)
+-+..+. -.+.+|..++++|=.+.|||.++ +-|+++...+. ..+...
T Consensus 503 -giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit~~~r----V~Ii~GrP~hC~ 575 (1899)
T KOG4659|consen 503 -GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NVVLRITVVHR----VRIILGRPTHCD 575 (1899)
T ss_pred -ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec--ceEEEEccCcc----EEEEcCCccccc
Confidence 3333221 12567899999997777999985 45777654322 111100
Q ss_pred --------------CCCCCCCceeECCCCCEEEEEecCC
Q 017317 261 --------------NLPGGPDNIKLAPDGSFWIAILQLS 285 (373)
Q Consensus 261 --------------~~~g~p~~i~~d~dG~lwva~~~~~ 285 (373)
...-.+..|++..+|-|||+...++
T Consensus 576 ~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~r 614 (1899)
T KOG4659|consen 576 LANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGR 614 (1899)
T ss_pred cCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccch
Confidence 0011367799999999999998763
No 30
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.97 E-value=2.9e-06 Score=76.83 Aligned_cols=167 Identities=15% Similarity=0.144 Sum_probs=101.5
Q ss_pred CCEEE-EecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECC-CcEEEEe-cCC-cEEEeeccCCccccc
Q 017317 88 GVLYT-ATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-EEG-VTVLASHVNGSRINL 161 (373)
Q Consensus 88 G~l~v-~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~-~gl~~~~-~~g-~~~l~~~~~~~~~~~ 161 (373)
+++|+ +..++.|.+++ .+++..........+. +++++++|+ +|++... ..+..++ .++ ....... + ..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~-~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~---~~ 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPR-GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS--G---PD 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCCC-ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC--C---CC
Confidence 35664 45688899998 4555433333345678 999999986 6666443 4567777 555 3221111 1 22
Q ss_pred cceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCC
Q 017317 162 ADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKF 240 (373)
Q Consensus 162 ~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~ 240 (373)
+..++++++|+ +|++... .+.|..+|..+++..........+.++++++||+.++++.....
T Consensus 75 ~~~~~~~~~g~~l~~~~~~-----------------~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~ 137 (300)
T TIGR03866 75 PELFALHPNGKILYIANED-----------------DNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTN 137 (300)
T ss_pred ccEEEECCCCCEEEEEcCC-----------------CCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCC
Confidence 45788999986 6666432 36788999876654333332345789999999997777665444
Q ss_pred eEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEE-EEE
Q 017317 241 RCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFW-IAI 281 (373)
Q Consensus 241 ~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lw-va~ 281 (373)
.++.++...... .... .....|..++++++|+.+ ++.
T Consensus 138 ~~~~~d~~~~~~--~~~~--~~~~~~~~~~~s~dg~~l~~~~ 175 (300)
T TIGR03866 138 MAHFIDTKTYEI--VDNV--LVDQRPRFAEFTADGKELWVSS 175 (300)
T ss_pred eEEEEeCCCCeE--EEEE--EcCCCccEEEECCCCCEEEEEc
Confidence 566666543211 1111 122357778899999754 443
No 31
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=8.3e-07 Score=83.77 Aligned_cols=184 Identities=19% Similarity=0.222 Sum_probs=124.8
Q ss_pred cCCcceEEEecCCC-EEEEe-cCCeEEEEE-cCCceEEeeeecCccccCeEECCCC-cEEEEECC---CcEEEEe-cCCc
Q 017317 76 LNGPEDVCVDRNGV-LYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQEN-EILVCDAD---KGLLKVT-EEGV 147 (373)
Q Consensus 76 ~~~P~~ia~d~~G~-l~v~~-~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g-~L~va~~~---~gl~~~~-~~g~ 147 (373)
...|.++++.+.|. +|+.+ .++.|.+++ ...+.......+..|. +++++++| .+||++.. +.+..++ .++
T Consensus 73 ~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~-~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~- 150 (381)
T COG3391 73 GVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPV-GLAVDPDGKYVYVANAGNGNNTVSVIDAATN- 150 (381)
T ss_pred CccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCc-eEEECCCCCEEEEEecccCCceEEEEeCCCC-
Confidence 37799999988665 99766 458899998 3333333333445899 99999888 79999873 3466676 333
Q ss_pred EEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE-----eecCCCCcc
Q 017317 148 TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-----LLDSLFFAN 221 (373)
Q Consensus 148 ~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-----~~~~~~~~~ 221 (373)
+.......| ..|.+++++++|. +|+++.. .+.|..+|.++..... .......|.
T Consensus 151 ~~~~~~~vG---~~P~~~a~~p~g~~vyv~~~~-----------------~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~ 210 (381)
T COG3391 151 KVTATIPVG---NTPTGVAVDPDGNKVYVTNSD-----------------DNTVSVIDTSGNSVVRGSVGSLVGVGTGPA 210 (381)
T ss_pred eEEEEEecC---CCcceEEECCCCCeEEEEecC-----------------CCeEEEEeCCCcceeccccccccccCCCCc
Confidence 111112222 1457899999996 9999843 4789999987665543 234467789
Q ss_pred eEEEccCCCEEEEEeCCC--CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCE-EEEEec
Q 017317 222 GVALSKDEDYLVVCETFK--FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF-WIAILQ 283 (373)
Q Consensus 222 gi~~~~dg~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l-wva~~~ 283 (373)
++++++||+.+|+++..+ +.+.+++............. ... .|.+++.+++|.. |++...
T Consensus 211 ~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 211 GIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred eEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCEEEEEecC
Confidence 999999999999999887 58888886543222111111 122 5888999999975 555333
No 32
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.81 E-value=1.7e-05 Score=73.06 Aligned_cols=247 Identities=11% Similarity=-0.018 Sum_probs=129.2
Q ss_pred CCEEEEecC-----CeEEEEE-cCCceEEeeeecCccccCeEECCCC-cEEEEEC---------C-CcEEEEe-cCC--c
Q 017317 88 GVLYTATRD-----GWIKRLH-KNGTWENWKLIGGDTLLGITTTQEN-EILVCDA---------D-KGLLKVT-EEG--V 147 (373)
Q Consensus 88 G~l~v~~~~-----g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g-~L~va~~---------~-~gl~~~~-~~g--~ 147 (373)
.++|+.+.. ++|.++| .++++......+.+|. ++ +.+|| .||||.. . ..|-.+| .++ .
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~ 90 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI 90 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence 456665533 8899999 4555544445677899 86 88888 5899976 3 2355566 444 2
Q ss_pred EEEeeccC--CccccccceeEEcCCC-cEEEEeCCccccccc-------c-------cc--ccccccCCceEEEEeCCC-
Q 017317 148 TVLASHVN--GSRINLADDLIAATDG-SIYFSVASTKFGLHN-------W-------GL--DLLEAKPHGKLLKYDPSL- 207 (373)
Q Consensus 148 ~~l~~~~~--~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~-------~-------~~--~~~~~~~~g~l~~~d~~~- 207 (373)
..+..... ......+..+++++|| .+||++.+-.....- . .+ .....+....+.+.|...
T Consensus 91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~ 170 (352)
T TIGR02658 91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLA 170 (352)
T ss_pred eEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceE
Confidence 22211100 0113456788999999 589886431010000 0 00 000111111222222211
Q ss_pred -------CeEEE----eecC-----CCCcceEEEcc-CCCEEEEEeCCCCeEEEEEecCCCCcceeEEe---cC---CCC
Q 017317 208 -------NETSI----LLDS-----LFFANGVALSK-DEDYLVVCETFKFRCLKYWLKGESKEQTEIFV---EN---LPG 264 (373)
Q Consensus 208 -------~~~~~----~~~~-----~~~~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~---~~---~~g 264 (373)
++... +... +..| .+++ ||+.+|++.. +.|+.+++.+........+. .. ...
T Consensus 171 ~v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~w 245 (352)
T TIGR02658 171 KVGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGW 245 (352)
T ss_pred EEEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeecccccccccc
Confidence 11110 1111 1222 3455 8887777765 78999997655333222221 11 012
Q ss_pred CCCc---eeECCCC-CEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCC
Q 017317 265 GPDN---IKLAPDG-SFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNG 339 (373)
Q Consensus 265 ~p~~---i~~d~dG-~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g 339 (373)
.|.+ ++++++| ++||+..++... - ...+...+..+| ..++.+..+.. |
T Consensus 246 rP~g~q~ia~~~dg~~lyV~~~~~~~~----t---------------------hk~~~~~V~ViD~~t~kvi~~i~v--G 298 (352)
T TIGR02658 246 RPGGWQQVAYHRARDRIYLLADQRAKW----T---------------------HKTASRFLFVVDAKTGKRLRKIEL--G 298 (352)
T ss_pred CCCcceeEEEcCCCCEEEEEecCCccc----c---------------------ccCCCCEEEEEECCCCeEEEEEeC--C
Confidence 5666 8999887 689976543100 0 011122466677 45666666653 2
Q ss_pred ceecceeEEEEe--CC-EEEEeeCCCCeEEEeeCC
Q 017317 340 KVMSFVTSALEF--DD-HLYLGSLNTNFIGKLPLK 371 (373)
Q Consensus 340 ~~~~~~~~~~~~--~g-~L~vgs~~~~~i~~~~l~ 371 (373)
. .+..+... +. .||+.+-.++.|..++..
T Consensus 299 ~---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 299 H---EIDSINVSQDAKPLLYALSTGDKTLYIFDAE 330 (352)
T ss_pred C---ceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence 2 34455544 45 788888778889998865
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.81 E-value=5.1e-06 Score=80.40 Aligned_cols=187 Identities=13% Similarity=0.158 Sum_probs=127.3
Q ss_pred CCcCCcceEEEecCCCEE-EEecCCeEEEEE-cCCc-eEEeeeecCccccCeEECCCCcEEEEEC-CCcEEEEe-cCC--
Q 017317 74 GILNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQENEILVCDA-DKGLLKVT-EEG-- 146 (373)
Q Consensus 74 g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~-~~~~~~~~~~p~~gl~~d~~g~L~va~~-~~gl~~~~-~~g-- 146 (373)
|-+..-.++++.|||.+. +|..+|.|..++ ..|- +.+|.+...... ++.+...|+..++.. .+.+..+| ...
T Consensus 348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt-~v~f~~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT-AVQFTARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE-EEEEEecCCEEEEeecCCeEEeeeecccce
Confidence 445566789999999888 567899999998 3442 455555555666 899999998777643 34455566 333
Q ss_pred cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceEEE
Q 017317 147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVAL 225 (373)
Q Consensus 147 ~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~ 225 (373)
.+.+.... + .....+++||.|.|.++.+. ..-.|+.++.++|+...++.+...| .+++|
T Consensus 427 fRTft~P~---p-~QfscvavD~sGelV~AG~~----------------d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f 486 (893)
T KOG0291|consen 427 FRTFTSPE---P-IQFSCVAVDPSGELVCAGAQ----------------DSFEIFVWSVQTGQLLDILSGHEGPVSGLSF 486 (893)
T ss_pred eeeecCCC---c-eeeeEEEEcCCCCEEEeecc----------------ceEEEEEEEeecCeeeehhcCCCCcceeeEE
Confidence 44443211 1 23458899999999888653 2346888898999887777777766 57999
Q ss_pred ccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCC-CEEEEEecCC
Q 017317 226 SKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG-SFWIAILQLS 285 (373)
Q Consensus 226 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG-~lwva~~~~~ 285 (373)
+++++ ++++.+++..|..+++-+. .++.+.+. ...-.-++++-+|| .+-|+|..+.
T Consensus 487 ~~~~~-~LaS~SWDkTVRiW~if~s-~~~vEtl~--i~sdvl~vsfrPdG~elaVaTldgq 543 (893)
T KOG0291|consen 487 SPDGS-LLASGSWDKTVRIWDIFSS-SGTVETLE--IRSDVLAVSFRPDGKELAVATLDGQ 543 (893)
T ss_pred ccccC-eEEeccccceEEEEEeecc-CceeeeEe--eccceeEEEEcCCCCeEEEEEecce
Confidence 99999 7888888888888876442 22333322 11123456777888 4888888764
No 34
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.79 E-value=1.9e-06 Score=75.55 Aligned_cols=193 Identities=16% Similarity=0.161 Sum_probs=107.1
Q ss_pred CCcCCcceEEEec-CCCEE-EEecCCeEEEEEcCCceEEee-e-ecCccccCeEECCCCcEEEEEC-CCcEEEEe-c-CC
Q 017317 74 GILNGPEDVCVDR-NGVLY-TATRDGWIKRLHKNGTWENWK-L-IGGDTLLGITTTQENEILVCDA-DKGLLKVT-E-EG 146 (373)
Q Consensus 74 g~~~~P~~ia~d~-~G~l~-v~~~~g~I~~~~~~g~~~~~~-~-~~~~p~~gl~~d~~g~L~va~~-~~gl~~~~-~-~g 146 (373)
|....+.+|++++ ++.|| |.+..+.|+.++.+|++.... . ..+.+- ||+.-.+|.+.+++. .+.++.++ . .+
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~E-gI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYE-GITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEE-EEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCce-eEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 4345689999998 57799 666889999999888753322 1 235678 999887777777764 35576666 2 22
Q ss_pred --cE-----EEeeccCCccccccceeEEcCC-CcEEEEeCCccccccccccccccccCCceEEEEeC--CCCeEEEee--
Q 017317 147 --VT-----VLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP--SLNETSILL-- 214 (373)
Q Consensus 147 --~~-----~l~~~~~~~~~~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~--~~~~~~~~~-- 214 (373)
.. .+.............+|+.|+. +++|++... ...+|+.++. .........
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~----------------~P~~l~~~~~~~~~~~~~~~~~~ 161 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER----------------KPKRLYEVNGFPGGFDLFVSDDQ 161 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES----------------SSEEEEEEESTT-SS--EEEE-H
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC----------------CChhhEEEccccCccceeecccc
Confidence 21 1111222223345789999987 478887432 2246777775 222222211
Q ss_pred ------cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCC------CCCCceeECCCCCEEEEEe
Q 017317 215 ------DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLP------GGPDNIKLAPDGSFWIAIL 282 (373)
Q Consensus 215 ------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------g~p~~i~~d~dG~lwva~~ 282 (373)
.....+.+++++|..+++|+-+....+|..++.+|.-.... ....... --|.||++|++|+|||..-
T Consensus 162 ~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~-~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 162 DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSL-SLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEE-E-STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred ccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEE-EeCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence 12445789999999989999999999999999666422211 1111000 1488999999999999986
Q ss_pred cC
Q 017317 283 QL 284 (373)
Q Consensus 283 ~~ 284 (373)
..
T Consensus 241 pN 242 (248)
T PF06977_consen 241 PN 242 (248)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 35
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.73 E-value=4.5e-06 Score=78.23 Aligned_cols=154 Identities=16% Similarity=0.201 Sum_probs=94.6
Q ss_pred cceEEEecCCC-EEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECC-CcEEEEe-cCC--cEEEe
Q 017317 79 PEDVCVDRNGV-LYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-EEG--VTVLA 151 (373)
Q Consensus 79 P~~ia~d~~G~-l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~-~gl~~~~-~~g--~~~l~ 151 (373)
+..+++.+||+ +|+.+.+|.|.++| .+++.......+..|. ++++++||+ +|++... ..+..+| ++. ++.+.
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~-~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR-GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE-EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc-eEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 45567788776 88888899999999 4555544445677899 999999997 6667543 4577777 444 33332
Q ss_pred ec-cC-CccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCe--EEEeecCCCCcceEEEcc
Q 017317 152 SH-VN-GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--TSILLDSLFFANGVALSK 227 (373)
Q Consensus 152 ~~-~~-~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~--~~~~~~~~~~~~gi~~~~ 227 (373)
.. .. +.+...+.+|...+....|+.... ..+.++.+|....+ .........+|.+..+++
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk----------------d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp 181 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASPGRPEFVVNLK----------------DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP 181 (369)
T ss_dssp --EE-TTTS---EEEEEE-SSSSEEEEEET----------------TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T
T ss_pred cccccccccCCCceeEEecCCCCEEEEEEc----------------cCCeEEEEEeccccccceeeecccccccccccCc
Confidence 21 11 112234556777777775655322 35789999865432 222334456788999999
Q ss_pred CCCEEEEEeCCCCeEEEEEecC
Q 017317 228 DEDYLVVCETFKFRCLKYWLKG 249 (373)
Q Consensus 228 dg~~l~v~~~~~~~i~~~~~~~ 249 (373)
++++++++....+.+..++...
T Consensus 182 dgry~~va~~~sn~i~viD~~~ 203 (369)
T PF02239_consen 182 DGRYFLVAANGSNKIAVIDTKT 203 (369)
T ss_dssp TSSEEEEEEGGGTEEEEEETTT
T ss_pred ccceeeecccccceeEEEeecc
Confidence 9999999887788888888554
No 36
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.72 E-value=2.4e-06 Score=77.49 Aligned_cols=180 Identities=21% Similarity=0.296 Sum_probs=109.2
Q ss_pred EeccCCcCCcceEEEecC-CCEEEEecCCeEEEEEc-CCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEecCCc
Q 017317 70 RLGEGILNGPEDVCVDRN-GVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGV 147 (373)
Q Consensus 70 ~~~~g~~~~P~~ia~d~~-G~l~v~~~~g~I~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g~ 147 (373)
.+....+.+||.+.+|+. +--|++-.+|+|.++.. +..+..+......++ .-.+++. ..++ .
T Consensus 47 l~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~---------~~~~~~~----~~~~---~ 110 (376)
T KOG1520|consen 47 LIPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTN---------RSQCCDP----GSFE---T 110 (376)
T ss_pred cccccccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEecccccc---------ccccCCC----ccee---c
Confidence 334444789999999984 45788888999988873 122333322110111 0001110 0000 0
Q ss_pred EEEeeccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-----CCCCcc
Q 017317 148 TVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-----SLFFAN 221 (373)
Q Consensus 148 ~~l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-----~~~~~~ 221 (373)
+.+ -..|-+|+++..| .+||+|.. =+|+.++++++..+.+.+ .+.+.|
T Consensus 111 e~~--------CGRPLGl~f~~~ggdL~VaDAY------------------lGL~~V~p~g~~a~~l~~~~~G~~~kf~N 164 (376)
T KOG1520|consen 111 EPL--------CGRPLGIRFDKKGGDLYVADAY------------------LGLLKVGPEGGLAELLADEAEGKPFKFLN 164 (376)
T ss_pred ccc--------cCCcceEEeccCCCeEEEEecc------------------eeeEEECCCCCcceeccccccCeeeeecC
Confidence 111 1356789999887 99999986 479999999888665543 245679
Q ss_pred eEEEccCCCEEEEEeCCC-----------------CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317 222 GVALSKDEDYLVVCETFK-----------------FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL 284 (373)
Q Consensus 222 gi~~~~dg~~l~v~~~~~-----------------~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~ 284 (373)
++.++++|. +|++++.. +|+.+||.. ....+++.+++ .+|+|+++++|+.+.+-+..+
T Consensus 165 ~ldI~~~g~-vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~---tK~~~VLld~L-~F~NGlaLS~d~sfvl~~Et~ 239 (376)
T KOG1520|consen 165 DLDIDPEGV-VYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPS---TKVTKVLLDGL-YFPNGLALSPDGSFVLVAETT 239 (376)
T ss_pred ceeEcCCCe-EEEeccccccchhheEEeeecCCCccceEEecCc---ccchhhhhhcc-cccccccCCCCCCEEEEEeec
Confidence 999999765 99998753 355566532 22333444333 479999999999876665544
Q ss_pred CCchhhhccCCh
Q 017317 285 SSPGLEFVHTSK 296 (373)
Q Consensus 285 ~~~~~~~~~~~p 296 (373)
...+.+++-+.|
T Consensus 240 ~~ri~rywi~g~ 251 (376)
T KOG1520|consen 240 TARIKRYWIKGP 251 (376)
T ss_pred cceeeeeEecCC
Confidence 334444444333
No 37
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.69 E-value=9.4e-05 Score=69.90 Aligned_cols=140 Identities=14% Similarity=0.161 Sum_probs=79.4
Q ss_pred EEEecCCCEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeeccCCcc
Q 017317 82 VCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSR 158 (373)
Q Consensus 82 ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~ 158 (373)
.+++ ++.+|+++.+|.|+.++ .+|+..-.....+....+.+.+ ++.+|+++..+.++.+| .+| ...- ....+..
T Consensus 61 p~v~-~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG~~~W~-~~~~~~~ 137 (377)
T TIGR03300 61 PAVA-GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD-GGLVFVGTEKGEVIALDAEDGKELWR-AKLSSEV 137 (377)
T ss_pred eEEE-CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc-CCEEEEEcCCCEEEEEECCCCcEeee-eccCcee
Confidence 3555 78999999999999999 6786532222222222145554 67899987766789999 678 4322 2222211
Q ss_pred ccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCC------cceEEEccCCCEE
Q 017317 159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF------ANGVALSKDEDYL 232 (373)
Q Consensus 159 ~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~------~~gi~~~~dg~~l 232 (373)
.. ...+ .++.+|+... .+.|+.+|.++++...-...... .....+. + +.+
T Consensus 138 ~~---~p~v-~~~~v~v~~~------------------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v 193 (377)
T TIGR03300 138 LS---PPLV-ANGLVVVRTN------------------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGV 193 (377)
T ss_pred ec---CCEE-ECCEEEEECC------------------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEE
Confidence 11 1122 2567887653 37899999887765432211100 0111222 3 345
Q ss_pred EEEeCCCCeEEEEEecC
Q 017317 233 VVCETFKFRCLKYWLKG 249 (373)
Q Consensus 233 ~v~~~~~~~i~~~~~~~ 249 (373)
|+.. .+..++.++...
T Consensus 194 ~~~~-~~g~v~ald~~t 209 (377)
T TIGR03300 194 LVGF-AGGKLVALDLQT 209 (377)
T ss_pred EEEC-CCCEEEEEEccC
Confidence 5553 456788888643
No 38
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.60 E-value=7.6e-05 Score=65.37 Aligned_cols=194 Identities=16% Similarity=0.167 Sum_probs=115.3
Q ss_pred cCCcCCcceEEEec-CCCEE-EEecCCeEEEEEcCCceEEee-e-ecCccccCeEECCCCcEEEEECC-CcEEEEe--cC
Q 017317 73 EGILNGPEDVCVDR-NGVLY-TATRDGWIKRLHKNGTWENWK-L-IGGDTLLGITTTQENEILVCDAD-KGLLKVT--EE 145 (373)
Q Consensus 73 ~g~~~~P~~ia~d~-~G~l~-v~~~~g~I~~~~~~g~~~~~~-~-~~~~p~~gl~~d~~g~L~va~~~-~gl~~~~--~~ 145 (373)
.|....-.++.+++ +..|| +.+....|+.++.+|++-... . ....|- +|..-.+|...+++.. ..++.+. .+
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE-~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPE-TIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChh-HeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 34445567899998 55677 444667899999888754332 1 234567 7777655555555433 3444443 33
Q ss_pred C-cEEEee-----ccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC--
Q 017317 146 G-VTVLAS-----HVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-- 216 (373)
Q Consensus 146 g-~~~l~~-----~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-- 216 (373)
+ ...... ........+-.+++.|+.. ++||+-.. ++ -+||.++............
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr---------------~P-~~I~~~~~~~~~l~~~~~~~~ 224 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER---------------NP-IGIFEVTQSPSSLSVHASLDP 224 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc---------------CC-cEEEEEecCCcccccccccCc
Confidence 3 211111 1111223456789999865 89998532 22 4677776432222211100
Q ss_pred -------CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCC------CCCceeECCCCCEEEEEec
Q 017317 217 -------LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPG------GPDNIKLAPDGSFWIAILQ 283 (373)
Q Consensus 217 -------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g------~p~~i~~d~dG~lwva~~~ 283 (373)
+..-.|+.+++..+.|+|-......+..++.+|...+... ......| .+.|+++|.+|+||+....
T Consensus 225 ~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~ls-L~~g~~gL~~dipqaEGiamDd~g~lYIvSEP 303 (316)
T COG3204 225 TADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLS-LTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred ccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEE-eccCCCCCcccCCCcceeEECCCCCEEEEecC
Confidence 1234688899888889988878888999988776322111 1111111 3788999999999999876
Q ss_pred C
Q 017317 284 L 284 (373)
Q Consensus 284 ~ 284 (373)
+
T Consensus 304 n 304 (316)
T COG3204 304 N 304 (316)
T ss_pred C
Confidence 5
No 39
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.58 E-value=0.00013 Score=64.42 Aligned_cols=176 Identities=18% Similarity=0.190 Sum_probs=109.2
Q ss_pred ceEEEecCC-CEEEEecCCeEEEEEcCC--ceEEeeeecCccccCeEECCCCcEEEEEC-CCcEEEEe-cCC--cEEEee
Q 017317 80 EDVCVDRNG-VLYTATRDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQENEILVCDA-DKGLLKVT-EEG--VTVLAS 152 (373)
Q Consensus 80 ~~ia~d~~G-~l~v~~~~g~I~~~~~~g--~~~~~~~~~~~p~~gl~~d~~g~L~va~~-~~gl~~~~-~~g--~~~l~~ 152 (373)
..+.+.+++ .++++..+|.|..++... ....+........ .+.+.++++++++.. .+.+..++ .++ ...+..
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 133 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS-SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG 133 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE-EEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc
Confidence 367777776 566777899999998433 2333333233456 888988888777655 45567777 444 222221
Q ss_pred ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-CCCCcceEEEccCCCE
Q 017317 153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDEDY 231 (373)
Q Consensus 153 ~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~~gi~~~~dg~~ 231 (373)
....+..+.+.+++.++++... .+.|..+|..+++...... .......+.++++++.
T Consensus 134 -----~~~~i~~~~~~~~~~~l~~~~~-----------------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 191 (289)
T cd00200 134 -----HTDWVNSVAFSPDGTFVASSSQ-----------------DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEK 191 (289)
T ss_pred -----CCCcEEEEEEcCcCCEEEEEcC-----------------CCcEEEEEccccccceeEecCccccceEEECCCcCE
Confidence 1124678899998877666431 3678888876554333222 2234678999999986
Q ss_pred EEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317 232 LVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL 282 (373)
Q Consensus 232 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~ 282 (373)
++++.. ++.+..|++..... ...+. ........+++++++.++++..
T Consensus 192 l~~~~~-~~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 192 LLSSSS-DGTIKLWDLSTGKC--LGTLR-GHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred EEEecC-CCcEEEEECCCCce--ecchh-hcCCceEEEEEcCCCcEEEEEc
Confidence 777765 67888888753211 11111 1123456688888887777765
No 40
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.55 E-value=0.00029 Score=62.19 Aligned_cols=180 Identities=20% Similarity=0.246 Sum_probs=106.3
Q ss_pred CcceEEEecCCCEE-EEecCCeEEEEEc-CCce-EEeeeecCccccCeEECCCCc-EEEEECCCcEEEEe-cCC--cEEE
Q 017317 78 GPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG--VTVL 150 (373)
Q Consensus 78 ~P~~ia~d~~G~l~-v~~~~g~I~~~~~-~g~~-~~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g--~~~l 150 (373)
...++.+.+++.+. ++..+|.|..++. +++. ........... .+.+.++++ ++++...+.+..++ .++ ...+
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~ 89 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVR-DVAASADGTYLASGSSDKTIRLWDLETGECVRTL 89 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCccee-EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE
Confidence 34677888876555 6777899988883 3332 22222223334 778888884 55555455567777 443 3333
Q ss_pred eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-CCCCcceEEEccCC
Q 017317 151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDE 229 (373)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~~gi~~~~dg 229 (373)
... ...+..+.+.+++.++++... .+.+..+|..+++...... .......+++++++
T Consensus 90 ~~~-----~~~i~~~~~~~~~~~~~~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 147 (289)
T cd00200 90 TGH-----TSYVSSVAFSPDGRILSSSSR-----------------DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG 147 (289)
T ss_pred ecc-----CCcEEEEEEcCCCCEEEEecC-----------------CCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcC
Confidence 211 124677888888887777542 3788888887555443333 22345788999997
Q ss_pred CEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEecC
Q 017317 230 DYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQL 284 (373)
Q Consensus 230 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~~~ 284 (373)
+. +++...++.+..|++...+. ...+. ........+.++++|+ ++++...+
T Consensus 148 ~~-l~~~~~~~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~ 199 (289)
T cd00200 148 TF-VASSSQDGTIKLWDLRTGKC--VATLT-GHTGEVNSVAFSPDGEKLLSSSSDG 199 (289)
T ss_pred CE-EEEEcCCCcEEEEEcccccc--ceeEe-cCccccceEEECCCcCEEEEecCCC
Confidence 74 44444466788888753321 11222 2223466788888884 55555433
No 41
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.51 E-value=0.00014 Score=68.30 Aligned_cols=168 Identities=14% Similarity=0.179 Sum_probs=96.2
Q ss_pred EEEEe-cCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECCCcEEEEe-cCC--cEEEeeccCCccccccc
Q 017317 90 LYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLAD 163 (373)
Q Consensus 90 l~v~~-~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~~ 163 (373)
+|+.. .+|.|..+| .+.+........+.++.++++.+||+ +||++....+..+| .++ +..+. .| ..+.
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~---~G---~~~~ 81 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK---VG---GNPR 81 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----S---SEEE
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe---cC---CCcc
Confidence 34555 578999998 33443333333444442678889896 89998766788888 554 33332 12 3577
Q ss_pred eeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC--------CCcceEEEccCCCEEEE
Q 017317 164 DLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--------FFANGVALSKDEDYLVV 234 (373)
Q Consensus 164 ~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~--------~~~~gi~~~~dg~~l~v 234 (373)
++++++||+ +|+++.. .+.+..+|.++.+........ ....+|.-++.+...++
T Consensus 82 ~i~~s~DG~~~~v~n~~-----------------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv 144 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYE-----------------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVV 144 (369)
T ss_dssp EEEE--TTTEEEEEEEE-----------------TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEE
T ss_pred eEEEcCCCCEEEEEecC-----------------CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEE
Confidence 899999995 6777542 468899998876644322211 12246667788775555
Q ss_pred EeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317 235 CETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL 282 (373)
Q Consensus 235 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~ 282 (373)
+-...+.|+..+....+..... .. ....+|.+..+|++|+++++..
T Consensus 145 ~lkd~~~I~vVdy~d~~~~~~~-~i-~~g~~~~D~~~dpdgry~~va~ 190 (369)
T PF02239_consen 145 NLKDTGEIWVVDYSDPKNLKVT-TI-KVGRFPHDGGFDPDGRYFLVAA 190 (369)
T ss_dssp EETTTTEEEEEETTTSSCEEEE-EE-E--TTEEEEEE-TTSSEEEEEE
T ss_pred EEccCCeEEEEEecccccccee-ee-cccccccccccCcccceeeecc
Confidence 6566688998886554221111 11 2234788899999998766543
No 42
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.48 E-value=2e-05 Score=77.13 Aligned_cols=214 Identities=15% Similarity=0.220 Sum_probs=131.3
Q ss_pred cCCeEEEEEcCCc------eEEeeee-cCccccCeEEC-CCCcEEEEECC-CcEEEEecCC--cEEEeeccCCccccccc
Q 017317 95 RDGWIKRLHKNGT------WENWKLI-GGDTLLGITTT-QENEILVCDAD-KGLLKVTEEG--VTVLASHVNGSRINLAD 163 (373)
Q Consensus 95 ~~g~I~~~~~~g~------~~~~~~~-~~~p~~gl~~d-~~g~L~va~~~-~gl~~~~~~g--~~~l~~~~~~~~~~~~~ 163 (373)
..+.|.++..+|. .+.+... ..-++ ||.+| ++..+|..|.. ..|-+-.-.| -+.+.. ..+..|.
T Consensus 997 qg~~I~~lplng~~~~K~~ak~~l~~p~~IiV-GidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n----~~L~SPE 1071 (1289)
T KOG1214|consen 997 QGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIV-GIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVN----SGLISPE 1071 (1289)
T ss_pred ccceEEEeecCcchhchhhhhceEecccceee-eeecccccceEEEeecCCCccccccccCCCCceeec----ccCCCcc
Confidence 4456776664441 1222222 34467 99999 45567766643 3344433223 333322 2345788
Q ss_pred eeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCC--C
Q 017317 164 DLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK--F 240 (373)
Q Consensus 164 ~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~--~ 240 (373)
+|++|--+ ++|.+|+.. ..-.+-.+|.. .+...+.+++-+|.+|++++-+..|||+++.+ -
T Consensus 1072 GiAVDh~~Rn~ywtDS~l---------------D~IevA~LdG~-~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenP 1135 (1289)
T KOG1214|consen 1072 GIAVDHIRRNMYWTDSVL---------------DKIEVALLDGS-ERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENP 1135 (1289)
T ss_pred ceeeeeccceeeeecccc---------------chhheeecCCc-eeeEEEeecccCcceEEeecccCceeeccccccCC
Confidence 99999766 799998741 11235556643 22223457889999999999998999999865 4
Q ss_pred eEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCE--EEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCcc
Q 017317 241 RCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF--WIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKK 318 (373)
Q Consensus 241 ~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l--wva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 318 (373)
.|-+-+++|+ ..++++...-++|+|+.+|+.-++ ||-....|
T Consensus 1136 kIets~mDG~---NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~r--------------------------------- 1179 (1289)
T KOG1214|consen 1136 KIETSSMDGE---NRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKR--------------------------------- 1179 (1289)
T ss_pred cceeeccCCc---cceEEeecccCCCCCceeCcccceeeEEecCCcc---------------------------------
Confidence 6777788875 345677666789999999987753 66543321
Q ss_pred EEEEEECCCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCC
Q 017317 319 AAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLK 371 (373)
Q Consensus 319 g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~ 371 (373)
+..+.++|.-.+... ++ ...+-++....+++|...++.|+|..+++.
T Consensus 1180 --leC~~p~g~gRR~i~--~~--LqYPF~itsy~~~fY~TDWk~n~vvsv~~~ 1226 (1289)
T KOG1214|consen 1180 --LECTLPDGTGRRVIQ--NN--LQYPFSITSYADHFYHTDWKRNGVVSVNKH 1226 (1289)
T ss_pred --eeEecCCCCcchhhh--hc--ccCceeeeeccccceeeccccCceEEeecc
Confidence 344555554333221 12 224455555556688888888888777654
No 43
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.48 E-value=1.9e-05 Score=71.30 Aligned_cols=186 Identities=20% Similarity=0.265 Sum_probs=107.1
Q ss_pred cceEEEecCCCEEEEec-------------CCeEEEEE-cCCce-EEeeee------cCccccCeEECC-C-----CcEE
Q 017317 79 PEDVCVDRNGVLYTATR-------------DGWIKRLH-KNGTW-ENWKLI------GGDTLLGITTTQ-E-----NEIL 131 (373)
Q Consensus 79 P~~ia~d~~G~l~v~~~-------------~g~I~~~~-~~g~~-~~~~~~------~~~p~~gl~~d~-~-----g~L~ 131 (373)
.-.+.+|+.|+||+-+. .-+|+.+| .+++. +.+... .+... .+++|. + +..|
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~ln-dl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLN-DLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEE-EEEEECTTTTS-SEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccc-eEEEEccCCCCcceEEE
Confidence 34688999999996431 13789999 45543 233211 12334 677774 2 4689
Q ss_pred EEECC-CcEEEEe-cCC--cEEEeecc-----------CCcccc---ccceeEEcC---CC-cEEEEeCCcccccccccc
Q 017317 132 VCDAD-KGLLKVT-EEG--VTVLASHV-----------NGSRIN---LADDLIAAT---DG-SIYFSVASTKFGLHNWGL 189 (373)
Q Consensus 132 va~~~-~gl~~~~-~~g--~~~l~~~~-----------~~~~~~---~~~~l~~~~---dG-~l~v~~~~~~~~~~~~~~ 189 (373)
++|.. .||+.+| .+| .+++.... .|..+. .+.+++..+ +| .||+.-.+
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls---------- 151 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS---------- 151 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT----------
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCC----------
Confidence 99876 5899999 776 44443211 111111 234455543 44 47776532
Q ss_pred ccccccCCceEEEEeCC------C-------CeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCC-Ccce
Q 017317 190 DLLEAKPHGKLLKYDPS------L-------NETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGES-KEQT 255 (373)
Q Consensus 190 ~~~~~~~~g~l~~~d~~------~-------~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~-~~~~ 255 (373)
...+|++..+ . .+++.+........|++++++|. ||+++...+.|.+++.+++- ....
T Consensus 152 -------s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~ 223 (287)
T PF03022_consen 152 -------SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNAIGCWDPDGPYTPENF 223 (287)
T ss_dssp --------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTEEEEEETTTSB-GCCE
T ss_pred -------CCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCeEEEEeCCCCcCccch
Confidence 1346666421 0 11233333334568999999887 99999999999999976531 1233
Q ss_pred eEEecCC--CCCCCceeECC--CCCEEEEEec
Q 017317 256 EIFVENL--PGGPDNIKLAP--DGSFWIAILQ 283 (373)
Q Consensus 256 ~~~~~~~--~g~p~~i~~d~--dG~lwva~~~ 283 (373)
+.+..+. -..|+++.++. +|.||+.++.
T Consensus 224 ~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 224 EILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp EEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred heeEEcCceeeccceeeeccccCceEEEEECc
Confidence 4444332 35799999999 9999999865
No 44
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.47 E-value=0.00013 Score=70.43 Aligned_cols=176 Identities=12% Similarity=0.116 Sum_probs=100.7
Q ss_pred eEEEecCCC-EE-EEecC--CeEEEEEc-CCceEEeeeecCccccCeEECCCCc-EEEE-ECCC--cEEEEe-cCC-cEE
Q 017317 81 DVCVDRNGV-LY-TATRD--GWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVC-DADK--GLLKVT-EEG-VTV 149 (373)
Q Consensus 81 ~ia~d~~G~-l~-v~~~~--g~I~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~-L~va-~~~~--gl~~~~-~~g-~~~ 149 (373)
+..+.|||+ |+ +...+ ..|+.++. .|+.+.+....+... ..++.+||+ |+++ +..+ .|+.++ .++ .+.
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~ 300 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR 300 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE
Confidence 346777776 33 33333 36888884 455554443333445 678899996 5544 3222 388888 566 554
Q ss_pred EeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccC
Q 017317 150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228 (373)
Q Consensus 150 l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~d 228 (373)
+.... .......+++||+ |+++... .....||++|.++++.+.+........+.+++||
T Consensus 301 lt~~~-----~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpD 360 (448)
T PRK04792 301 ITRHR-----AIDTEPSWHPDGKSLIFTSER---------------GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPD 360 (448)
T ss_pred CccCC-----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEEecCCCCCcCeeECCC
Confidence 43211 1234567889995 6555321 1234799999888876655322223345789999
Q ss_pred CCEEEEEeCCC--CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEe
Q 017317 229 EDYLVVCETFK--FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAIL 282 (373)
Q Consensus 229 g~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~ 282 (373)
|+.++++.... ..|+++++++... ...... .......+++||+ |+++..
T Consensus 361 G~~l~~~~~~~g~~~I~~~dl~~g~~---~~lt~~--~~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 361 GRSMIMVNRTNGKFNIARQDLETGAM---QVLTST--RLDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred CCEEEEEEecCCceEEEEEECCCCCe---EEccCC--CCCCCceECCCCCEEEEEEe
Confidence 99998876543 3677777665432 222211 1122346778886 444443
No 45
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.45 E-value=0.001 Score=63.32 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=78.7
Q ss_pred EEecCCCEEEEecCCeEEEEE-cCCceEEeeeecC-----------ccccCeEECCCCcEEEEECCCcEEEEe-cCC-cE
Q 017317 83 CVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGG-----------DTLLGITTTQENEILVCDADKGLLKVT-EEG-VT 148 (373)
Q Consensus 83 a~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~-----------~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~ 148 (373)
+++ +|.+|+++.+|.++.+| .+|+..-...... ....+++++ ++++|+++....++.+| ++| ..
T Consensus 66 vv~-~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~v~v~~~~g~l~ald~~tG~~~ 143 (394)
T PRK11138 66 AVA-YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA-GGKVYIGSEKGQVYALNAEDGEVA 143 (394)
T ss_pred EEE-CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE-CCEEEEEcCCCEEEEEECCCCCCc
Confidence 444 78999999999999999 5676432111111 111134443 67899987666789999 678 43
Q ss_pred EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-C-----Ccce
Q 017317 149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-F-----FANG 222 (373)
Q Consensus 149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~-----~~~g 222 (373)
.-. ...+.....| .+. +|.+|+.+. .+.|+.+|.++|+...-.... . ....
T Consensus 144 W~~-~~~~~~~ssP---~v~-~~~v~v~~~------------------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~s 200 (394)
T PRK11138 144 WQT-KVAGEALSRP---VVS-DGLVLVHTS------------------NGMLQALNESDGAVKWTVNLDVPSLTLRGESA 200 (394)
T ss_pred ccc-cCCCceecCC---EEE-CCEEEEECC------------------CCEEEEEEccCCCEeeeecCCCCcccccCCCC
Confidence 322 1222111111 222 678888754 378999999888765322211 0 0011
Q ss_pred EEEccCCCEEEEEeCCCCeEEEEEecCC
Q 017317 223 VALSKDEDYLVVCETFKFRCLKYWLKGE 250 (373)
Q Consensus 223 i~~~~dg~~l~v~~~~~~~i~~~~~~~~ 250 (373)
-++. + +.+|+.. .++.++.++....
T Consensus 201 P~v~-~-~~v~~~~-~~g~v~a~d~~~G 225 (394)
T PRK11138 201 PATA-F-GGAIVGG-DNGRVSAVLMEQG 225 (394)
T ss_pred CEEE-C-CEEEEEc-CCCEEEEEEccCC
Confidence 1222 2 3466654 4567888876543
No 46
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.43 E-value=4.3e-05 Score=72.67 Aligned_cols=178 Identities=19% Similarity=0.265 Sum_probs=100.7
Q ss_pred ccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-------c-CCCCcceEEEccCC-
Q 017317 159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-------D-SLFFANGVALSKDE- 229 (373)
Q Consensus 159 ~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-------~-~~~~~~gi~~~~dg- 229 (373)
+..|.+|++.|||++||+.. ..|+|+++++.++..+.+. . +.....||+++|+-
T Consensus 29 L~~Pw~maflPDG~llVtER-----------------~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~ 91 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTER-----------------ATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFM 91 (454)
T ss_pred CCCceEEEEcCCCeEEEEEe-----------------cCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCcc
Confidence 45789999999999999963 1489999987665433221 1 23445789999874
Q ss_pred -----CEEEEEeCC---------CCeEEEEEecCC--CCcceeEEecCCCC----CCCceeECCCCCEEEEEecCCCch-
Q 017317 230 -----DYLVVCETF---------KFRCLKYWLKGE--SKEQTEIFVENLPG----GPDNIKLAPDGSFWIAILQLSSPG- 288 (373)
Q Consensus 230 -----~~l~v~~~~---------~~~i~~~~~~~~--~~~~~~~~~~~~~g----~p~~i~~d~dG~lwva~~~~~~~~- 288 (373)
+++|++-+. ..+|.||.++.. .....+.+....+. .-..|++++||.|||++.......
T Consensus 92 ~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~ 171 (454)
T TIGR03606 92 QEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQG 171 (454)
T ss_pred ccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCc
Confidence 468887522 468999887532 23333333333332 123488999999999987642110
Q ss_pred hhhccCChHHHHHHHhcchhhhhc--cCCCccEEEEEECCCCcEE-----------EEEeCCCCceecceeEEEEe-CCE
Q 017317 289 LEFVHTSKATKHLLAAFPKLIKLV--APLHKKAAVVNVAANGIVI-----------RKFEDPNGKVMSFVTSALEF-DDH 354 (373)
Q Consensus 289 ~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~g~v~~~~~~g~~~-----------~~~~~~~g~~~~~~~~~~~~-~g~ 354 (373)
.+. ..|.. ...+|...+.. ......|.|++++++|++- +.|. .| ++.+..+.++ +|+
T Consensus 172 ~n~--~~~~~---aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA--~G--~RNp~Gla~dp~G~ 242 (454)
T TIGR03606 172 ANF--FLPNQ---AQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFT--YG--HRNPQGLAFTPDGT 242 (454)
T ss_pred ccc--cCcch---hccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEE--Ee--ccccceeEECCCCC
Confidence 000 00000 00011100000 1134568899999998731 2221 12 1234445444 578
Q ss_pred EEEeeCCC
Q 017317 355 LYLGSLNT 362 (373)
Q Consensus 355 L~vgs~~~ 362 (373)
||++..+.
T Consensus 243 Lw~~e~Gp 250 (454)
T TIGR03606 243 LYASEQGP 250 (454)
T ss_pred EEEEecCC
Confidence 99887655
No 47
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.41 E-value=8.5e-05 Score=68.32 Aligned_cols=183 Identities=15% Similarity=0.113 Sum_probs=107.8
Q ss_pred cceEEEecCCCE-EEEecCCeEEEEEcCCceEEe---eeecCccccCeEECCCCc--EEEEECCCcEEEEe-cCC-cEEE
Q 017317 79 PEDVCVDRNGVL-YTATRDGWIKRLHKNGTWENW---KLIGGDTLLGITTTQENE--ILVCDADKGLLKVT-EEG-VTVL 150 (373)
Q Consensus 79 P~~ia~d~~G~l-~v~~~~g~I~~~~~~g~~~~~---~~~~~~p~~gl~~d~~g~--L~va~~~~gl~~~~-~~g-~~~l 150 (373)
-.+|-+.|.--| .++..++.+..+..+|+.... ......|....+|.++|. ++.+....-++.|| .++ ++.+
T Consensus 216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~ 295 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKL 295 (514)
T ss_pred ceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccc
Confidence 456777774444 477777766555556643322 122344543667788887 33333333467788 666 5554
Q ss_pred eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCC
Q 017317 151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED 230 (373)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~ 230 (373)
.. ..|........+.+.+++++.+..+ .+|.|+.+...+++...-..--....+++|+.|++
T Consensus 296 ~~-~~g~e~~~~e~FeVShd~~fia~~G-----------------~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk 357 (514)
T KOG2055|consen 296 KP-PYGVEEKSMERFEVSHDSNFIAIAG-----------------NNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSK 357 (514)
T ss_pred cC-CCCcccchhheeEecCCCCeEEEcc-----------------cCceEEeehhhhhhhhheeeeccEEeeEEEecCCc
Confidence 32 3334445667788999998555443 25788888877665432222223456789999999
Q ss_pred EEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEec
Q 017317 231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ 283 (373)
Q Consensus 231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~ 283 (373)
.||++.. .+.|+.+++.... -...|.+...-.-..+|...+|. |+|+..
T Consensus 358 ~l~~~~~-~GeV~v~nl~~~~--~~~rf~D~G~v~gts~~~S~ng~-ylA~GS 406 (514)
T KOG2055|consen 358 ELLASGG-TGEVYVWNLRQNS--CLHRFVDDGSVHGTSLCISLNGS-YLATGS 406 (514)
T ss_pred EEEEEcC-CceEEEEecCCcc--eEEEEeecCccceeeeeecCCCc-eEEecc
Confidence 7777754 4589999987653 23344432111223467777887 666543
No 48
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.38 E-value=0.00012 Score=64.40 Aligned_cols=196 Identities=13% Similarity=0.154 Sum_probs=105.3
Q ss_pred ccccCeEECCC-CcEEEEEC-CCcEEEEecCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccc
Q 017317 117 DTLLGITTTQE-NEILVCDA-DKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLL 192 (373)
Q Consensus 117 ~p~~gl~~d~~-g~L~va~~-~~gl~~~~~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~ 192 (373)
.+. ||+++++ +.||+... ...|+.++.+| ++.+. ..+ +.-+.+|+.-.+|.+.+++..
T Consensus 23 e~S-GLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~--l~g--~~D~EgI~y~g~~~~vl~~Er------------- 84 (248)
T PF06977_consen 23 ELS-GLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIP--LDG--FGDYEGITYLGNGRYVLSEER------------- 84 (248)
T ss_dssp -EE-EEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE---SS---SSEEEEEE-STTEEEEEETT-------------
T ss_pred Ccc-ccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEe--CCC--CCCceeEEEECCCEEEEEEcC-------------
Confidence 456 9999986 56886643 34578888666 33332 222 445778998888888877632
Q ss_pred cccCCceEEEEeC--CCCeE-----EEeec-----CCCCcceEEEccCCCEEEEEeCCC-CeEEEEEe--cCCCCcceeE
Q 017317 193 EAKPHGKLLKYDP--SLNET-----SILLD-----SLFFANGVALSKDEDYLVVCETFK-FRCLKYWL--KGESKEQTEI 257 (373)
Q Consensus 193 ~~~~~g~l~~~d~--~~~~~-----~~~~~-----~~~~~~gi~~~~dg~~l~v~~~~~-~~i~~~~~--~~~~~~~~~~ 257 (373)
.+.|+.++. .+... +.+.- +...-.|+++++.++.|+++.... .+|+.++. .+........
T Consensus 85 ----~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~ 160 (248)
T PF06977_consen 85 ----DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD 160 (248)
T ss_dssp ----TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-
T ss_pred ----CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc
Confidence 356665543 32221 11211 122347999999988888886443 24555553 1111100000
Q ss_pred --Ee-cC-CCCCCCceeECC-CCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEE
Q 017317 258 --FV-EN-LPGGPDNIKLAP-DGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIR 332 (373)
Q Consensus 258 --~~-~~-~~g~p~~i~~d~-dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~ 332 (373)
+. .. .-.-+.++.+++ .|++|+-+..++ .++.+|.+|+++.
T Consensus 161 ~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~----------------------------------~l~~~d~~G~~~~ 206 (248)
T PF06977_consen 161 QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESR----------------------------------LLLELDRQGRVVS 206 (248)
T ss_dssp HHHH-HT--SS---EEEEETTTTEEEEEETTTT----------------------------------EEEEE-TT--EEE
T ss_pred cccccccceeccccceEEcCCCCeEEEEECCCC----------------------------------eEEEECCCCCEEE
Confidence 00 00 112377888887 567888876653 6899999999988
Q ss_pred EEeCCCC-----ceecceeEEEEe-CCEEEEeeCCCCeEEEee
Q 017317 333 KFEDPNG-----KVMSFVTSALEF-DDHLYLGSLNTNFIGKLP 369 (373)
Q Consensus 333 ~~~~~~g-----~~~~~~~~~~~~-~g~L~vgs~~~~~i~~~~ 369 (373)
.+.-..| ..+..+.+++.+ +|+||+.+= .|..++++
T Consensus 207 ~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f~ 248 (248)
T PF06977_consen 207 SLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PNLFYRFE 248 (248)
T ss_dssp EEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TTEEEEEE
T ss_pred EEEeCCcccCcccccCCccEEEECCCCCEEEEcC-CceEEEeC
Confidence 8866554 234567888876 589999994 66666653
No 49
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.36 E-value=0.00074 Score=65.13 Aligned_cols=156 Identities=14% Similarity=0.104 Sum_probs=90.0
Q ss_pred eEEEEEcCCc-eEEeeeecCccccCeEECCCCc-E-EEEEC--CCcEEEEe-cCC-cEEEeeccCCccccccceeEEcCC
Q 017317 98 WIKRLHKNGT-WENWKLIGGDTLLGITTTQENE-I-LVCDA--DKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD 170 (373)
Q Consensus 98 ~I~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~-L-~va~~--~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~d 170 (373)
.|+..+.+|. .+.+........ ...+.+||+ | |+... ...|+.++ .+| .+.+.. ..+ .....++.||
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~-~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-~~g----~~~~~~~SPD 256 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVL-TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN-FPG----MTFAPRFSPD 256 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeE-eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec-CCC----cccCcEECCC
Confidence 5566665443 222322223344 778889996 3 33322 23588888 666 555432 121 2345688999
Q ss_pred Cc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEe
Q 017317 171 GS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF--KFRCLKYWL 247 (373)
Q Consensus 171 G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~ 247 (373)
|+ |+++... .....||.+|.++++.+.+...........|+|||+.++++... ...|+++++
T Consensus 257 G~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~ 321 (435)
T PRK05137 257 GRKVVMSLSQ---------------GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA 321 (435)
T ss_pred CCEEEEEEec---------------CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence 95 6555321 12357999999888776654433334567899999988876532 347888887
Q ss_pred cCCCCcceeEEecCCCCCCCceeECCCCCEE
Q 017317 248 KGESKEQTEIFVENLPGGPDNIKLAPDGSFW 278 (373)
Q Consensus 248 ~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lw 278 (373)
++.... .+.. ..+........+||+..
T Consensus 322 ~g~~~~---~lt~-~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 322 DGSNPR---RISF-GGGRYSTPVWSPRGDLI 348 (435)
T ss_pred CCCCeE---Eeec-CCCcccCeEECCCCCEE
Confidence 654322 2221 12223346677888643
No 50
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.32 E-value=0.00017 Score=68.67 Aligned_cols=221 Identities=13% Similarity=0.175 Sum_probs=116.0
Q ss_pred EEEecCCCEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeeccCCcc
Q 017317 82 VCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSR 158 (373)
Q Consensus 82 ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~ 158 (373)
++++ ++++|+++.+|.++.+| .+|+..-.....+.......+. ++.+|++...+.++.+| .+| ...-.. .....
T Consensus 116 ~~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~-~~~~~ 192 (394)
T PRK11138 116 VTVA-GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS-DGLVLVHTSNGMLQALNESDGAVKWTVN-LDVPS 192 (394)
T ss_pred cEEE-CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeec-CCCCc
Confidence 3444 68999999999999999 5776432222222222123332 67899887666689999 678 332221 11110
Q ss_pred c--cccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcce---------EEEcc
Q 017317 159 I--NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG---------VALSK 227 (373)
Q Consensus 159 ~--~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~g---------i~~~~ 227 (373)
. .....-++. +|.+|++.. .|.++.+|.++++...... ...+.+ +.-+|
T Consensus 193 ~~~~~~~sP~v~-~~~v~~~~~------------------~g~v~a~d~~~G~~~W~~~-~~~~~~~~~~~~~~~~~~sP 252 (394)
T PRK11138 193 LTLRGESAPATA-FGGAIVGGD------------------NGRVSAVLMEQGQLIWQQR-ISQPTGATEIDRLVDVDTTP 252 (394)
T ss_pred ccccCCCCCEEE-CCEEEEEcC------------------CCEEEEEEccCChhhheec-cccCCCccchhcccccCCCc
Confidence 0 001111222 467887754 3788888888776432111 111110 00111
Q ss_pred --CCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhc
Q 017317 228 --DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAF 305 (373)
Q Consensus 228 --dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~ 305 (373)
.++.+|++.. ++.++.++....+. .+.... +.+..+.. .+|++|+++..+
T Consensus 253 ~v~~~~vy~~~~-~g~l~ald~~tG~~----~W~~~~-~~~~~~~~-~~~~vy~~~~~g--------------------- 304 (394)
T PRK11138 253 VVVGGVVYALAY-NGNLVALDLRSGQI----VWKREY-GSVNDFAV-DGGRIYLVDQND--------------------- 304 (394)
T ss_pred EEECCEEEEEEc-CCeEEEEECCCCCE----EEeecC-CCccCcEE-ECCEEEEEcCCC---------------------
Confidence 2345888764 56899998754322 222111 12223343 467889887654
Q ss_pred chhhhhccCCCccEEEEEECC-CCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCC
Q 017317 306 PKLIKLVAPLHKKAAVVNVAA-NGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLK 371 (373)
Q Consensus 306 ~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~ 371 (373)
.++.+|. +|+.+-......+. ..+.....+++||+++..+ +|..++..
T Consensus 305 --------------~l~ald~~tG~~~W~~~~~~~~---~~~sp~v~~g~l~v~~~~G-~l~~ld~~ 353 (394)
T PRK11138 305 --------------RVYALDTRGGVELWSQSDLLHR---LLTAPVLYNGYLVVGDSEG-YLHWINRE 353 (394)
T ss_pred --------------eEEEEECCCCcEEEcccccCCC---cccCCEEECCEEEEEeCCC-EEEEEECC
Confidence 3677774 56654433222221 1233333567888887654 46666654
No 51
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.32 E-value=0.00033 Score=66.17 Aligned_cols=219 Identities=15% Similarity=0.169 Sum_probs=116.1
Q ss_pred EEEecCCCEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeeccCCcc
Q 017317 82 VCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSR 158 (373)
Q Consensus 82 ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~ 158 (373)
.+++ ++.+|+++.+|.++.+| .+|+..-.....+.......+ .++.+|++.....++.+| ++| ...-.. .....
T Consensus 101 p~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~ 177 (377)
T TIGR03300 101 VGAD-GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYS-RVTPA 177 (377)
T ss_pred eEEc-CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEc-cCCCc
Confidence 3454 78899999999999999 477653322222222212333 356888887666789999 677 332211 11110
Q ss_pred c--cccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-------------ceE
Q 017317 159 I--NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-------------NGV 223 (373)
Q Consensus 159 ~--~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-------------~gi 223 (373)
. .......+. +|.+|++.. .+.++.+|+.+++...... ...+ ...
T Consensus 178 ~~~~~~~sp~~~-~~~v~~~~~------------------~g~v~ald~~tG~~~W~~~-~~~~~g~~~~~~~~~~~~~p 237 (377)
T TIGR03300 178 LTLRGSASPVIA-DGGVLVGFA------------------GGKLVALDLQTGQPLWEQR-VALPKGRTELERLVDVDGDP 237 (377)
T ss_pred eeecCCCCCEEE-CCEEEEECC------------------CCEEEEEEccCCCEeeeec-cccCCCCCchhhhhccCCcc
Confidence 0 001111222 467777653 3789999988776432111 1111 011
Q ss_pred EEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHH
Q 017317 224 ALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLA 303 (373)
Q Consensus 224 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~ 303 (373)
.+ .++.+|++.. .+.++.++....+. .+..... ......+ .+|++|+++..+
T Consensus 238 ~~--~~~~vy~~~~-~g~l~a~d~~tG~~----~W~~~~~-~~~~p~~-~~~~vyv~~~~G------------------- 289 (377)
T TIGR03300 238 VV--DGGQVYAVSY-QGRVAALDLRSGRV----LWKRDAS-SYQGPAV-DDNRLYVTDADG------------------- 289 (377)
T ss_pred EE--ECCEEEEEEc-CCEEEEEECCCCcE----EEeeccC-CccCceE-eCCEEEEECCCC-------------------
Confidence 12 2446887764 56799998753321 2221111 1223333 357889887544
Q ss_pred hcchhhhhccCCCccEEEEEECC-CCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCC
Q 017317 304 AFPKLIKLVAPLHKKAAVVNVAA-NGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLK 371 (373)
Q Consensus 304 ~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~ 371 (373)
.++.+|. +|+.+..+....+. ..+.....+++||+++..+ .|..++..
T Consensus 290 ----------------~l~~~d~~tG~~~W~~~~~~~~---~~ssp~i~g~~l~~~~~~G-~l~~~d~~ 338 (377)
T TIGR03300 290 ----------------VVVALDRRSGSELWKNDELKYR---QLTAPAVVGGYLVVGDFEG-YLHWLSRE 338 (377)
T ss_pred ----------------eEEEEECCCCcEEEccccccCC---ccccCEEECCEEEEEeCCC-EEEEEECC
Confidence 4777875 57766554322221 1222233467888887654 46666553
No 52
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.31 E-value=0.00052 Score=66.15 Aligned_cols=200 Identities=16% Similarity=0.179 Sum_probs=114.9
Q ss_pred EEEecCCC-EEEEe-c--CCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEE-ECC--CcEEEEe-cCC-cEEE
Q 017317 82 VCVDRNGV-LYTAT-R--DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VTVL 150 (373)
Q Consensus 82 ia~d~~G~-l~v~~-~--~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va-~~~--~gl~~~~-~~g-~~~l 150 (373)
.++.++|+ |+..+ . ...|++++ ..|+.+.+....+... ...+.+||+ |+++ +.. ..|+.++ .+| .+.+
T Consensus 209 p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l 287 (433)
T PRK04922 209 PAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL 287 (433)
T ss_pred ccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEEC
Confidence 45667775 44333 2 34688888 4455555443334444 678999996 5443 322 2488888 666 5554
Q ss_pred eeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCC
Q 017317 151 ASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE 229 (373)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg 229 (373)
... . .......+++||+ |+++... .....||.+|.++++.+.+..........+++|||
T Consensus 288 t~~-~----~~~~~~~~spDG~~l~f~sd~---------------~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG 347 (433)
T PRK04922 288 TNH-F----GIDTEPTWAPDGKSIYFTSDR---------------GGRPQIYRVAASGGSAERLTFQGNYNARASVSPDG 347 (433)
T ss_pred ccC-C----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCCC
Confidence 321 1 1123568899995 5555321 11236999998777765543222334468999999
Q ss_pred CEEEEEeCCC--CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCE-EEEEecCCCchhhhccCChHHHHHHHhcc
Q 017317 230 DYLVVCETFK--FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF-WIAILQLSSPGLEFVHTSKATKHLLAAFP 306 (373)
Q Consensus 230 ~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l-wva~~~~~~~~~~~~~~~p~~~~~~~~~~ 306 (373)
+.++++.... ..|+.+++.+.. ...+... .......+++||+. +++.....
T Consensus 348 ~~Ia~~~~~~~~~~I~v~d~~~g~---~~~Lt~~--~~~~~p~~spdG~~i~~~s~~~g--------------------- 401 (433)
T PRK04922 348 KKIAMVHGSGGQYRIAVMDLSTGS---VRTLTPG--SLDESPSFAPNGSMVLYATREGG--------------------- 401 (433)
T ss_pred CEEEEEECCCCceeEEEEECCCCC---eEECCCC--CCCCCceECCCCCEEEEEEecCC---------------------
Confidence 9988875432 368888875432 2222211 12334578899973 43333211
Q ss_pred hhhhhccCCCccEEEEEECCCCcEEEEEeCCCC
Q 017317 307 KLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNG 339 (373)
Q Consensus 307 ~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g 339 (373)
...++.++.+|+....+..+.|
T Consensus 402 -----------~~~L~~~~~~g~~~~~l~~~~g 423 (433)
T PRK04922 402 -----------RGVLAAVSTDGRVRQRLVSADG 423 (433)
T ss_pred -----------ceEEEEEECCCCceEEcccCCC
Confidence 1347778888877766654433
No 53
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.31 E-value=8.7e-06 Score=68.66 Aligned_cols=111 Identities=18% Similarity=0.182 Sum_probs=77.6
Q ss_pred EEecCCCEEEEec----------CCeEEEEEcCCceEEeeeecCccccCeEECCCC-cEEEEECC-CcE--EEEe-cCC-
Q 017317 83 CVDRNGVLYTATR----------DGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-EILVCDAD-KGL--LKVT-EEG- 146 (373)
Q Consensus 83 a~d~~G~l~v~~~----------~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g-~L~va~~~-~gl--~~~~-~~g- 146 (373)
-+||+|+.|.|+. .|.++++-..++++.+....+-++ ||++|.+. .+|+.|.- ..+ +.+| ++|
T Consensus 115 kvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsN-gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~ 193 (310)
T KOG4499|consen 115 KVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISN-GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGD 193 (310)
T ss_pred ccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCc-cccccccCcEEEEEccCceEEeeeecCCCccc
Confidence 4677899998862 355566667778887777777888 99999776 46776653 456 4455 566
Q ss_pred c---EEEeeccC--CccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE
Q 017317 147 V---TVLASHVN--GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS 211 (373)
Q Consensus 147 ~---~~l~~~~~--~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~ 211 (373)
+ +.+..... ......|.++++|.+|+|||++.+ .++|+++||.+|+.-
T Consensus 194 ~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n-----------------g~~V~~~dp~tGK~L 246 (310)
T KOG4499|consen 194 LSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN-----------------GGTVQKVDPTTGKIL 246 (310)
T ss_pred ccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-----------------CcEEEEECCCCCcEE
Confidence 3 23333211 122346889999999999999875 479999999998753
No 54
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=98.31 E-value=7.1e-06 Score=59.14 Aligned_cols=81 Identities=25% Similarity=0.410 Sum_probs=58.0
Q ss_pred eeEEcCCCcEEEEeCCcccccccccc--ccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCe
Q 017317 164 DLIAATDGSIYFSVASTKFGLHNWGL--DLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFR 241 (373)
Q Consensus 164 ~l~~~~dG~l~v~~~~~~~~~~~~~~--~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~ 241 (373)
+|+.-...++|++... +....+.. +..-+-+.+.|+.||++ +.+.+++++..||||+++++++.|||++..++.
T Consensus 2 DIvavG~~sFy~TNDh--yf~~~~l~~lE~~l~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~ 77 (86)
T PF01731_consen 2 DIVAVGPDSFYVTNDH--YFTDPFLRLLETYLGLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLAHS 77 (86)
T ss_pred CEEEECcCcEEEECch--hhCcHHHHHHHHHhcCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccCCe
Confidence 4444334578888542 22222221 22223456789999974 677889999999999999999999999999999
Q ss_pred EEEEEec
Q 017317 242 CLKYWLK 248 (373)
Q Consensus 242 i~~~~~~ 248 (373)
|+.|..+
T Consensus 78 I~vy~~~ 84 (86)
T PF01731_consen 78 IHVYKRH 84 (86)
T ss_pred EEEEEec
Confidence 9999753
No 55
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.29 E-value=0.0012 Score=57.77 Aligned_cols=174 Identities=17% Similarity=0.191 Sum_probs=97.7
Q ss_pred EEecCCCEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEE-eecc-CCc
Q 017317 83 CVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVL-ASHV-NGS 157 (373)
Q Consensus 83 a~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l-~~~~-~~~ 157 (373)
++..+|.+|+++.++.|+.++ .+|+..--....+... ....-.++.+|++...+.++.+| .+| ...- .... +..
T Consensus 32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS-GAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG-SGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc-ceeeecccccccccceeeeEecccCCcceeeeecccccccc
Confidence 554589999999999999999 5886543223233333 33233577899988666799999 788 4332 1111 111
Q ss_pred cccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc------------ceEEE
Q 017317 158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA------------NGVAL 225 (373)
Q Consensus 158 ~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~------------~gi~~ 225 (373)
........+++ ++.+|++.. .+.|+.+|+++|+...-... ..+ .+-.+
T Consensus 111 ~~~~~~~~~~~-~~~~~~~~~------------------~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~ 170 (238)
T PF13360_consen 111 GVRSSSSPAVD-GDRLYVGTS------------------SGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPV 170 (238)
T ss_dssp STB--SEEEEE-TTEEEEEET------------------CSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEE
T ss_pred ccccccCceEe-cCEEEEEec------------------cCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceE
Confidence 22222333444 457888764 37899999998876433222 111 12223
Q ss_pred ccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317 226 SKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL 284 (373)
Q Consensus 226 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~ 284 (373)
..++ .+|++.... ++..++....+ ..+... ...+..+....++.+|+++..+
T Consensus 171 ~~~~-~v~~~~~~g-~~~~~d~~tg~----~~w~~~-~~~~~~~~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 171 ISDG-RVYVSSGDG-RVVAVDLATGE----KLWSKP-ISGIYSLPSVDGGTLYVTSSDG 222 (238)
T ss_dssp CCTT-EEEEECCTS-SEEEEETTTTE----EEEEEC-SS-ECECEECCCTEEEEEETTT
T ss_pred EECC-EEEEEcCCC-eEEEEECCCCC----EEEEec-CCCccCCceeeCCEEEEEeCCC
Confidence 3344 688886544 46666755432 123222 2223333445667888888433
No 56
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.26 E-value=0.00092 Score=64.37 Aligned_cols=173 Identities=14% Similarity=0.178 Sum_probs=99.9
Q ss_pred ceEEEecCCC-E-EEEecC--CeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEE-ECC--CcEEEEe-cCC-cE
Q 017317 80 EDVCVDRNGV-L-YTATRD--GWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VT 148 (373)
Q Consensus 80 ~~ia~d~~G~-l-~v~~~~--g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va-~~~--~gl~~~~-~~g-~~ 148 (373)
.+..+.++|+ | |+...+ ..|++++ .+|+.+.+....+... ...+.+||+ |++. +.. ..|+.++ .++ .+
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 280 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS 280 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 3456777775 3 344332 4688888 4455555443334445 678999996 4433 222 2488888 566 55
Q ss_pred EEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEcc
Q 017317 149 VLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK 227 (373)
Q Consensus 149 ~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~ 227 (373)
.+... .+ ......+.+||+ |+++... .....||++|.++++.+.+...........++|
T Consensus 281 ~lt~~-~~----~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp 340 (430)
T PRK00178 281 RVTNH-PA----IDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA 340 (430)
T ss_pred EcccC-CC----CcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccceEECC
Confidence 54321 11 123457889985 6665321 123479999988777665543222334568999
Q ss_pred CCCEEEEEeCCC--CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEE
Q 017317 228 DEDYLVVCETFK--FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFW 278 (373)
Q Consensus 228 dg~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lw 278 (373)
||+.++++.... ..|+.+++.+.. ...+... .......+++||+..
T Consensus 341 dg~~i~~~~~~~~~~~l~~~dl~tg~---~~~lt~~--~~~~~p~~spdg~~i 388 (430)
T PRK00178 341 DGKTLVMVHRQDGNFHVAAQDLQRGS---VRILTDT--SLDESPSVAPNGTML 388 (430)
T ss_pred CCCEEEEEEccCCceEEEEEECCCCC---EEEccCC--CCCCCceECCCCCEE
Confidence 999998886533 357788876532 2222211 122345678898743
No 57
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.26 E-value=1.5e-05 Score=73.67 Aligned_cols=161 Identities=16% Similarity=0.259 Sum_probs=95.1
Q ss_pred cccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE-EEee-------cCCCCcceEEEccC---
Q 017317 160 NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SILL-------DSLFFANGVALSKD--- 228 (373)
Q Consensus 160 ~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-~~~~-------~~~~~~~gi~~~~d--- 228 (373)
+.|.+|++.|||++||++. .|+|++++.+ +.. ..+. .+.....|++++|+
T Consensus 2 ~~P~~~a~~pdG~l~v~e~------------------~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~ 62 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAER------------------SGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFAS 62 (331)
T ss_dssp SSEEEEEEETTSCEEEEET------------------TTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCC
T ss_pred CCceEEEEeCCCcEEEEeC------------------CceEEEEeCC-CcCcceecccccccccccCCcccceeccccCC
Confidence 4578999999999999974 4899999954 433 2221 12334568999995
Q ss_pred CCEEEEEeCCC--------CeEEEEEecCC--CCcceeEEecCCCC------CCCceeECCCCCEEEEEecCCCchhhhc
Q 017317 229 EDYLVVCETFK--------FRCLKYWLKGE--SKEQTEIFVENLPG------GPDNIKLAPDGSFWIAILQLSSPGLEFV 292 (373)
Q Consensus 229 g~~l~v~~~~~--------~~i~~~~~~~~--~~~~~~~~~~~~~g------~p~~i~~d~dG~lwva~~~~~~~~~~~~ 292 (373)
..++|++.+.. .+|.|+..+.. .....+.+....+. .-..|++++||.||+++...... + .
T Consensus 63 n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~--~-~ 139 (331)
T PF07995_consen 63 NGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGND--D-N 139 (331)
T ss_dssp C-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTG--G-G
T ss_pred CCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCc--c-c
Confidence 35699987743 57888887654 22333333322111 12348899999999998765320 0 0
Q ss_pred cCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEE-------------EEeCCCCceecceeEEEEe-C-CEEEE
Q 017317 293 HTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIR-------------KFEDPNGKVMSFVTSALEF-D-DHLYL 357 (373)
Q Consensus 293 ~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~-------------~~~~~~g~~~~~~~~~~~~-~-g~L~v 357 (373)
+. ......|.|++++++|+... .|. .| +..+..+.++ . |+||+
T Consensus 140 ~~------------------~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A--~G--lRN~~~~~~d~~tg~l~~ 197 (331)
T PF07995_consen 140 AQ------------------DPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYA--YG--LRNPFGLAFDPNTGRLWA 197 (331)
T ss_dssp GC------------------STTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEE--E----SEEEEEEEETTTTEEEE
T ss_pred cc------------------ccccccceEEEecccCcCCCCCccccCCCceEEEEE--eC--CCccccEEEECCCCcEEE
Confidence 00 01344677899999987321 111 12 2345566666 4 89999
Q ss_pred eeCCCCe
Q 017317 358 GSLNTNF 364 (373)
Q Consensus 358 gs~~~~~ 364 (373)
+..+.+.
T Consensus 198 ~d~G~~~ 204 (331)
T PF07995_consen 198 ADNGPDG 204 (331)
T ss_dssp EEE-SSS
T ss_pred EccCCCC
Confidence 9876543
No 58
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.26 E-value=0.00088 Score=64.63 Aligned_cols=172 Identities=14% Similarity=0.096 Sum_probs=102.1
Q ss_pred ceEEEecCCC-E-EEEe--cCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEE-ECC--CcEEEEe-cCC-cE
Q 017317 80 EDVCVDRNGV-L-YTAT--RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VT 148 (373)
Q Consensus 80 ~~ia~d~~G~-l-~v~~--~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va-~~~--~gl~~~~-~~g-~~ 148 (373)
.+..+.+||+ | |+.. .+..|+.++ ..|+.+.+....+... +.++.+||+ |+++ +.. ..|+.++ .++ .+
T Consensus 205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 283 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF-APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT 283 (435)
T ss_pred EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc-CcEECCCCCEEEEEEecCCCceEEEEECCCCceE
Confidence 3456677776 3 3433 245788888 4555555544444455 788999996 4443 322 3488888 566 55
Q ss_pred EEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEcc
Q 017317 149 VLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK 227 (373)
Q Consensus 149 ~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~ 227 (373)
.+... .+ ......++|||+ |+++... .....||++|.++++.+.+...........|+|
T Consensus 284 ~Lt~~-~~----~~~~~~~spDG~~i~f~s~~---------------~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Sp 343 (435)
T PRK05137 284 RLTDS-PA----IDTSPSYSPDGSQIVFESDR---------------SGSPQLYVMNADGSNPRRISFGGGRYSTPVWSP 343 (435)
T ss_pred EccCC-CC----ccCceeEcCCCCEEEEEECC---------------CCCCeEEEEECCCCCeEEeecCCCcccCeEECC
Confidence 54321 11 223568889995 6665321 123479999988777666543322334578999
Q ss_pred CCCEEEEEeCCC--CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCE
Q 017317 228 DEDYLVVCETFK--FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF 277 (373)
Q Consensus 228 dg~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l 277 (373)
||+.++++.... .+|+.++.++.. ...+. . ........+++||+.
T Consensus 344 dG~~ia~~~~~~~~~~i~~~d~~~~~---~~~lt-~-~~~~~~p~~spDG~~ 390 (435)
T PRK05137 344 RGDLIAFTKQGGGQFSIGVMKPDGSG---ERILT-S-GFLVEGPTWAPNGRV 390 (435)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCc---eEecc-C-CCCCCCCeECCCCCE
Confidence 999888876433 467788765432 12222 1 123456778899974
No 59
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.25 E-value=0.0016 Score=60.26 Aligned_cols=178 Identities=16% Similarity=0.143 Sum_probs=94.4
Q ss_pred CcceEEEecCCC-EEEEe-c-CCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEE--ecCC-cEEE
Q 017317 78 GPEDVCVDRNGV-LYTAT-R-DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV--TEEG-VTVL 150 (373)
Q Consensus 78 ~P~~ia~d~~G~-l~v~~-~-~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~--~~~g-~~~l 150 (373)
.|+.+++.+||+ ||+.+ . ++.|-++| ..+++......++... .....++.....|- ......+ +.+| ...-
T Consensus 106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~-vy~t~e~~~~~~~~-Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH-IFPTANDTFFMHCR-DGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE-EEEecCCccEEEee-cCceEEEEecCCCceEEe
Confidence 355899999885 78877 3 68899998 5555543333344333 33333333333332 2233333 3344 2211
Q ss_pred e----eccCCccccccceeEEcC-CCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-----e-----
Q 017317 151 A----SHVNGSRINLADDLIAAT-DGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-----L----- 214 (373)
Q Consensus 151 ~----~~~~~~~~~~~~~l~~~~-dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-----~----- 214 (373)
. ......-+..| .+.+ +|+ +|++. .|.|+.+|..+...... .
T Consensus 184 ~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~-------------------eG~V~~id~~~~~~~~~~~~~~~~~~~~ 241 (352)
T TIGR02658 184 PTEVFHPEDEYLINHP---AYSNKSGRLVWPTY-------------------TGKIFQIDLSSGDAKFLPAIEAFTEAEK 241 (352)
T ss_pred eeeeecCCccccccCC---ceEcCCCcEEEEec-------------------CCeEEEEecCCCcceecceeeecccccc
Confidence 1 11011112233 2233 665 55552 27899998543322211 1
Q ss_pred cCCCCcce---EEEccCCCEEEEEe---------CCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEE
Q 017317 215 DSLFFANG---VALSKDEDYLVVCE---------TFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAI 281 (373)
Q Consensus 215 ~~~~~~~g---i~~~~dg~~l~v~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~ 281 (373)
.....|.| +++++|++++||.. ...+.|..+|....+ ..... .....|.++++++||+ +.+++
T Consensus 242 ~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k---vi~~i-~vG~~~~~iavS~Dgkp~lyvt 317 (352)
T TIGR02658 242 ADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK---RLRKI-ELGHEIDSINVSQDAKPLLYAL 317 (352)
T ss_pred ccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe---EEEEE-eCCCceeeEEECCCCCeEEEEe
Confidence 01234555 99999999999953 223689999864432 11112 1234688999999998 55555
Q ss_pred ec
Q 017317 282 LQ 283 (373)
Q Consensus 282 ~~ 283 (373)
+.
T Consensus 318 n~ 319 (352)
T TIGR02658 318 ST 319 (352)
T ss_pred CC
Confidence 43
No 60
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=0.0028 Score=55.85 Aligned_cols=234 Identities=13% Similarity=0.095 Sum_probs=133.8
Q ss_pred CCcceEEEecCCCEEEE-ecCCeEEEEE-cCCceEEeeeec-CccccCeEE-CCCCcEEEEEC--CCcEEEEe-c-CC-c
Q 017317 77 NGPEDVCVDRNGVLYTA-TRDGWIKRLH-KNGTWENWKLIG-GDTLLGITT-TQENEILVCDA--DKGLLKVT-E-EG-V 147 (373)
Q Consensus 77 ~~P~~ia~d~~G~l~v~-~~~g~I~~~~-~~g~~~~~~~~~-~~p~~gl~~-d~~g~L~va~~--~~gl~~~~-~-~g-~ 147 (373)
..+.+|.++++|...+. +.+..+..++ .+|+........ -.+. -+.+ +.+..+.-+.. ...|..++ . +. +
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~-~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl 93 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVD-LACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL 93 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccccccc-EEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence 45788999999988865 5667888888 566543322211 1122 2223 33444444332 12344444 2 23 4
Q ss_pred EEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEcc
Q 017317 148 TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK 227 (373)
Q Consensus 148 ~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~ 227 (373)
+.+ .|.. ..++.|.+.|-+..+++.+- ...|..+|....+.+.+.. +..+.-.|++|
T Consensus 94 RYF----~GH~-~~V~sL~~sP~~d~FlS~S~-----------------D~tvrLWDlR~~~cqg~l~-~~~~pi~AfDp 150 (311)
T KOG1446|consen 94 RYF----PGHK-KRVNSLSVSPKDDTFLSSSL-----------------DKTVRLWDLRVKKCQGLLN-LSGRPIAAFDP 150 (311)
T ss_pred EEc----CCCC-ceEEEEEecCCCCeEEeccc-----------------CCeEEeeEecCCCCceEEe-cCCCcceeECC
Confidence 433 2222 35789999998888888653 3456666665455444332 34456789999
Q ss_pred CCCEEEEEeCCCCeEEEEEecCCCCcceeEEecC--CCCCCCceeECCCCC-EEEEEecCCCchhhhccCChHHHHHHHh
Q 017317 228 DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN--LPGGPDNIKLAPDGS-FWIAILQLSSPGLEFVHTSKATKHLLAA 304 (373)
Q Consensus 228 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~g~p~~i~~d~dG~-lwva~~~~~~~~~~~~~~~p~~~~~~~~ 304 (373)
+|- ++.+......|..||+.--..+.+..+.-. ....-.++.+.+||. |.+++..+
T Consensus 151 ~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s-------------------- 209 (311)
T KOG1446|consen 151 EGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS-------------------- 209 (311)
T ss_pred CCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC--------------------
Confidence 996 555555566899999764334445555322 112345688999996 67777665
Q ss_pred cchhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeCCCCeEEEeeCC
Q 017317 305 FPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSLNTNFIGKLPLK 371 (373)
Q Consensus 305 ~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~~~~~i~~~~l~ 371 (373)
.++.+| -+|.+...++...+. .+....+.+. +++..+++...-+|...++.
T Consensus 210 ---------------~~~~lDAf~G~~~~tfs~~~~~-~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 210 ---------------FIYLLDAFDGTVKSTFSGYPNA-GNLPLSATFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred ---------------cEEEEEccCCcEeeeEeeccCC-CCcceeEEECCCCcEEEEecCCCcEEEEEcC
Confidence 245555 578877777553322 1122333333 45555555555566666654
No 61
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.24 E-value=0.00056 Score=63.81 Aligned_cols=178 Identities=13% Similarity=0.121 Sum_probs=99.9
Q ss_pred ceEEEecCCCEEEEecCCeEEEEEcCCce-EE-eeeecCccccCeEECCCCcEEEEECCCcEEEEecCCcEEEeeccCCc
Q 017317 80 EDVCVDRNGVLYTATRDGWIKRLHKNGTW-EN-WKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGS 157 (373)
Q Consensus 80 ~~ia~d~~G~l~v~~~~g~I~~~~~~g~~-~~-~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g~~~l~~~~~~~ 157 (373)
.++++.++|.+..|+++|.|..+++.+.. .. .....+... +|+.-++|.|.-+..+..|..+|. ..+.+....-..
T Consensus 250 l~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~-~L~~lr~GtllSGgKDRki~~Wd~-~y~k~r~~elPe 327 (626)
T KOG2106|consen 250 LCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVF-SLCMLRDGTLLSGGKDRKIILWDD-NYRKLRETELPE 327 (626)
T ss_pred EEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceE-EEEEecCccEeecCccceEEeccc-cccccccccCch
Confidence 45788899999999999999999975532 11 113345566 788888999887655555776762 122222111112
Q ss_pred cccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeC
Q 017317 158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237 (373)
Q Consensus 158 ~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~ 237 (373)
.+..+..++... +.|||+++. ..|+.=+.+++-..........-=|++..|+.+ +|++..
T Consensus 328 ~~G~iRtv~e~~-~di~vGTtr------------------N~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~g 387 (626)
T KOG2106|consen 328 QFGPIRTVAEGK-GDILVGTTR------------------NFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCG 387 (626)
T ss_pred hcCCeeEEecCC-CcEEEeecc------------------ceEEEeeecCCceEEEEecccceeeEEcCCChh-heeecc
Confidence 233556666543 349999865 234433333222222222223345788999887 666654
Q ss_pred CCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCC
Q 017317 238 FKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLS 285 (373)
Q Consensus 238 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~ 285 (373)
..+..++|- +.+......+.+ + .....+++.|.+-+++..++
T Consensus 388 -qdk~v~lW~-~~k~~wt~~~~d--~--~~~~~fhpsg~va~Gt~~G~ 429 (626)
T KOG2106|consen 388 -QDKHVRLWN-DHKLEWTKIIED--P--AECADFHPSGVVAVGTATGR 429 (626)
T ss_pred -CcceEEEcc-CCceeEEEEecC--c--eeEeeccCcceEEEeeccce
Confidence 445555553 222222222221 1 23456677887777776663
No 62
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.24 E-value=5.9e-05 Score=74.01 Aligned_cols=179 Identities=16% Similarity=0.108 Sum_probs=115.4
Q ss_pred cceEEEec-CCCEE-EEecCCeEEEEEcCC-ceEEe-eeecCccccCeEECCCC-cEEEEECCC---cEEEEecCC--cE
Q 017317 79 PEDVCVDR-NGVLY-TATRDGWIKRLHKNG-TWENW-KLIGGDTLLGITTTQEN-EILVCDADK---GLLKVTEEG--VT 148 (373)
Q Consensus 79 P~~ia~d~-~G~l~-v~~~~g~I~~~~~~g-~~~~~-~~~~~~p~~gl~~d~~g-~L~va~~~~---gl~~~~~~g--~~ 148 (373)
|-+|.+|. +..+| .....-.|.+-..+| +.+.+ ......|- ||++|--+ ++|.+|... ++-.+ +| .+
T Consensus 1027 iVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPE-GiAVDh~~Rn~ywtDS~lD~IevA~L--dG~~rk 1103 (1289)
T KOG1214|consen 1027 IVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPE-GIAVDHIRRNMYWTDSVLDKIEVALL--DGSERK 1103 (1289)
T ss_pred eeeeecccccceEEEeecCCCccccccccCCCCceeecccCCCcc-ceeeeeccceeeeeccccchhheeec--CCceee
Confidence 45566665 34444 444444455554444 33333 34567899 99999666 688887642 23333 35 34
Q ss_pred EEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE-eecCCCCcceEEEc
Q 017317 149 VLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFANGVALS 226 (373)
Q Consensus 149 ~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~~gi~~~ 226 (373)
.|... .+-.|.+|++|+ .|+||.+|+. +.+-.|-+.+.+++..++ +.+.+..|||+.|+
T Consensus 1104 vLf~t----dLVNPR~iv~D~~rgnLYwtDWn---------------RenPkIets~mDG~NrRilin~DigLPNGLtfd 1164 (1289)
T KOG1214|consen 1104 VLFYT----DLVNPRAIVVDPIRGNLYWTDWN---------------RENPKIETSSMDGENRRILINTDIGLPNGLTFD 1164 (1289)
T ss_pred EEEee----cccCcceEEeecccCceeecccc---------------ccCCcceeeccCCccceEEeecccCCCCCceeC
Confidence 44432 233578999997 5799999985 234456666666544444 45678899999999
Q ss_pred cCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317 227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL 284 (373)
Q Consensus 227 ~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~ 284 (373)
|-.+.|-|++.+++|+.....++. ++..+ . +.-.+|-++.-+.+. +|.+.|..
T Consensus 1165 pfs~~LCWvDAGt~rleC~~p~g~--gRR~i-~-~~LqYPF~itsy~~~-fY~TDWk~ 1217 (1289)
T KOG1214|consen 1165 PFSKLLCWVDAGTKRLECTLPDGT--GRRVI-Q-NNLQYPFSITSYADH-FYHTDWKR 1217 (1289)
T ss_pred cccceeeEEecCCcceeEecCCCC--cchhh-h-hcccCceeeeecccc-ceeecccc
Confidence 999999999999999998876653 22222 2 223478888776664 88888864
No 63
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.24 E-value=0.0012 Score=63.41 Aligned_cols=174 Identities=9% Similarity=0.057 Sum_probs=101.1
Q ss_pred eEEEecCCCEE--EEe--cCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEE-ECC--CcEEEEe-cCC-cEE
Q 017317 81 DVCVDRNGVLY--TAT--RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VTV 149 (373)
Q Consensus 81 ~ia~d~~G~l~--v~~--~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va-~~~--~gl~~~~-~~g-~~~ 149 (373)
+.++.|||+.. +.. .+..|+.++ ..|+.+.+....+... ...+.+||+ |+++ +.. ..|+.++ +++ .+.
T Consensus 203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~ 281 (429)
T PRK03629 203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ 281 (429)
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence 45777777643 322 234677777 4455554443334445 788999996 5444 222 2488888 666 555
Q ss_pred EeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccC
Q 017317 150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228 (373)
Q Consensus 150 l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~d 228 (373)
+.... .......+.|||+ |+++... ...-.||++|.++++.+.+...........++||
T Consensus 282 lt~~~-----~~~~~~~wSPDG~~I~f~s~~---------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpD 341 (429)
T PRK03629 282 VTDGR-----SNNTEPTWFPDSQNLAYTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSD 341 (429)
T ss_pred ccCCC-----CCcCceEECCCCCEEEEEeCC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence 53221 1234678899996 5554321 0123799999888776665433333456889999
Q ss_pred CCEEEEEeCCC--CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEE
Q 017317 229 EDYLVVCETFK--FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280 (373)
Q Consensus 229 g~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva 280 (373)
|+.++++...+ ..|+.+++++.. ...+... ..-....+.+||+..+.
T Consensus 342 G~~Ia~~~~~~g~~~I~~~dl~~g~---~~~Lt~~--~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 342 GKFMVMVSSNGGQQHIAKQDLATGG---VQVLTDT--FLDETPSIAPNGTMVIY 390 (429)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC---eEEeCCC--CCCCCceECCCCCEEEE
Confidence 99888765433 457777765532 2222211 11234667899974433
No 64
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.24 E-value=0.0014 Score=62.97 Aligned_cols=201 Identities=14% Similarity=0.203 Sum_probs=114.1
Q ss_pred eEEEecCCC-EEEEe-c--CCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEE-ECC--CcEEEEe-cCC-cEE
Q 017317 81 DVCVDRNGV-LYTAT-R--DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VTV 149 (373)
Q Consensus 81 ~ia~d~~G~-l~v~~-~--~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va-~~~--~gl~~~~-~~g-~~~ 149 (373)
+.++.|+|+ |++.+ . ...|+.++ ..|+.+.+....+... ..++.+||+ |+++ +.. ..|+.++ ..+ .+.
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~ 278 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR 278 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE
Confidence 346777775 33333 2 24588888 4555555543344455 788999996 5443 222 2477777 445 554
Q ss_pred EeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccC
Q 017317 150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228 (373)
Q Consensus 150 l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~d 228 (373)
+... .+ ......+++||+ |+++... ...-.||.++.++++.+.+..........+|+||
T Consensus 279 lt~~-~~----~~~~~~wSpDG~~l~f~s~~---------------~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpD 338 (427)
T PRK02889 279 LTQS-SG----IDTEPFFSPDGRSIYFTSDR---------------GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPD 338 (427)
T ss_pred CCCC-CC----CCcCeEEcCCCCEEEEEecC---------------CCCcEEEEEECCCCceEEEecCCCCcCceEECCC
Confidence 4321 11 123467899995 6654321 1224689998776665544322222345789999
Q ss_pred CCEEEEEeCCC--CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCE-EEEEecCCCchhhhccCChHHHHHHHhc
Q 017317 229 EDYLVVCETFK--FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF-WIAILQLSSPGLEFVHTSKATKHLLAAF 305 (373)
Q Consensus 229 g~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l-wva~~~~~~~~~~~~~~~p~~~~~~~~~ 305 (373)
|++++++.... ..|+.+++.+... ..+... .........+||+. +.+...+.
T Consensus 339 G~~Ia~~s~~~g~~~I~v~d~~~g~~---~~lt~~--~~~~~p~~spdg~~l~~~~~~~g-------------------- 393 (427)
T PRK02889 339 GKLLAYISRVGGAFKLYVQDLATGQV---TALTDT--TRDESPSFAPNGRYILYATQQGG-------------------- 393 (427)
T ss_pred CCEEEEEEccCCcEEEEEEECCCCCe---EEccCC--CCccCceECCCCCEEEEEEecCC--------------------
Confidence 99888765433 3688888765332 222211 22345678899974 44443221
Q ss_pred chhhhhccCCCccEEEEEECCCCcEEEEEeCCCC
Q 017317 306 PKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNG 339 (373)
Q Consensus 306 ~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g 339 (373)
...+..++.+|+....+..+.|
T Consensus 394 ------------~~~l~~~~~~g~~~~~l~~~~g 415 (427)
T PRK02889 394 ------------RSVLAAVSSDGRIKQRLSVQGG 415 (427)
T ss_pred ------------CEEEEEEECCCCceEEeecCCC
Confidence 1246677778887776655544
No 65
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.19 E-value=0.00071 Score=57.78 Aligned_cols=181 Identities=14% Similarity=0.130 Sum_probs=105.7
Q ss_pred CCcceEEEecCCC-EEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCC-cEEEEECCCcEEEEe-cCC--cEEE
Q 017317 77 NGPEDVCVDRNGV-LYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-EEG--VTVL 150 (373)
Q Consensus 77 ~~P~~ia~d~~G~-l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g-~L~va~~~~gl~~~~-~~g--~~~l 150 (373)
..-..+.+..+|+ +|.|+++|.+..+| ..-........ ..|...+.+.++. +|++++..+.|..+| ... ...+
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~-~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l 162 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH-NSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL 162 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC-CCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence 4445667777776 56888999888887 22111111111 2343377787654 799998777788888 433 3333
Q ss_pred eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE---eecCCCCcce----E
Q 017317 151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI---LLDSLFFANG----V 223 (373)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~---~~~~~~~~~g----i 223 (373)
... ....+..+++++||...++..+ .|..|.++.-+++... ....+..-++ .
T Consensus 163 iPe----~~~~i~sl~v~~dgsml~a~nn-----------------kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C 221 (311)
T KOG0315|consen 163 IPE----DDTSIQSLTVMPDGSMLAAANN-----------------KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRC 221 (311)
T ss_pred CCC----CCcceeeEEEcCCCcEEEEecC-----------------CccEEEEEccCCCccccceEhhheecccceEEEE
Confidence 322 2246788999999998877532 4777777654433221 1222333333 4
Q ss_pred EEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317 224 ALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL 282 (373)
Q Consensus 224 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~ 282 (373)
.+|||++ .+++.+.+..+..+..++. -..+...+.-.+-..+.+++.||.+.|+..
T Consensus 222 ~lSPd~k-~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTas 277 (311)
T KOG0315|consen 222 LLSPDVK-YLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTAS 277 (311)
T ss_pred EECCCCc-EEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecC
Confidence 5899998 4455555667777765553 222222222222345577889998777654
No 66
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.18 E-value=0.0031 Score=61.04 Aligned_cols=134 Identities=10% Similarity=0.056 Sum_probs=79.5
Q ss_pred CeEECCCCc-EE-EEECC--CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCcccccccccccccc
Q 017317 121 GITTTQENE-IL-VCDAD--KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLE 193 (373)
Q Consensus 121 gl~~d~~g~-L~-va~~~--~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~ 193 (373)
...+++||+ |+ +.... ..|+.++ .+| .+.+.. ..+ .....+++|||+ |+++...
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~-~~g----~~~~~~wSPDG~~La~~~~~-------------- 282 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS-FPG----INGAPRFSPDGKKLALVLSK-------------- 282 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC-CCC----CcCCeeECCCCCEEEEEEeC--------------
Confidence 678899996 43 33322 2478888 566 544432 122 123568899995 7665321
Q ss_pred ccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEecCCCCcceeEEecCCCCCCCceeE
Q 017317 194 AKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF--KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKL 271 (373)
Q Consensus 194 ~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~ 271 (373)
.....||.+|.++++.+.+..........+|++||+.++++... ...|+++++++.+. ...... .......++
T Consensus 283 -~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt~~-g~~~~~~~~ 357 (448)
T PRK04792 283 -DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRLTFE-GEQNLGGSI 357 (448)
T ss_pred -CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEEecC-CCCCcCeeE
Confidence 12346999999888777654433344567899999988876543 35688888765432 222111 112233567
Q ss_pred CCCCCEE
Q 017317 272 APDGSFW 278 (373)
Q Consensus 272 d~dG~lw 278 (373)
++||+..
T Consensus 358 SpDG~~l 364 (448)
T PRK04792 358 TPDGRSM 364 (448)
T ss_pred CCCCCEE
Confidence 8888643
No 67
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.18 E-value=0.0029 Score=60.92 Aligned_cols=157 Identities=14% Similarity=0.084 Sum_probs=89.5
Q ss_pred eEEEEEcCCc-eEEeeeecCccccCeEECCCCcE--EEEEC--CCcEEEEe-cCC-cEEEeeccCCccccccceeEEcCC
Q 017317 98 WIKRLHKNGT-WENWKLIGGDTLLGITTTQENEI--LVCDA--DKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD 170 (373)
Q Consensus 98 ~I~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~L--~va~~--~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~d 170 (373)
.|+..|.+|. .+.+........ ..++++||+. |+... ...++.++ .+| .+.+... .+ ...++.+.||
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~-~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-~~----~~~~~~~SPD 253 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-PR----HNGAPAFSPD 253 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCcee-eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-CC----CcCCeEECCC
Confidence 4555554443 222322222344 7889999963 33321 13477777 566 5554321 11 2235789999
Q ss_pred Cc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEe
Q 017317 171 GS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF--KFRCLKYWL 247 (373)
Q Consensus 171 G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~ 247 (373)
|+ |+++... .....||.+|.++++.+.+...........|+|||+.++++... ...|+++++
T Consensus 254 G~~La~~~~~---------------~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 254 GSKLAFALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred CCEEEEEEcC---------------CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 95 6665321 12236999999888777665443445678999999988665432 346888877
Q ss_pred cCCCCcceeEEecCCCCCCCceeECCCCCEEE
Q 017317 248 KGESKEQTEIFVENLPGGPDNIKLAPDGSFWI 279 (373)
Q Consensus 248 ~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwv 279 (373)
++... ..+. ...+......+.+||+..+
T Consensus 319 ~~g~~---~~lt-~~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 319 NGGAP---QRIT-WEGSQNQDADVSSDGKFMV 346 (429)
T ss_pred CCCCe---EEee-cCCCCccCEEECCCCCEEE
Confidence 65432 2222 1122334567788886443
No 68
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.17 E-value=0.0023 Score=61.15 Aligned_cols=198 Identities=13% Similarity=0.069 Sum_probs=117.3
Q ss_pred EEecCCC--EEEEe-c--CCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEEC---CCcEEEEe-cCC-cEEE
Q 017317 83 CVDRNGV--LYTAT-R--DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDA---DKGLLKVT-EEG-VTVL 150 (373)
Q Consensus 83 a~d~~G~--l~v~~-~--~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~---~~gl~~~~-~~g-~~~l 150 (373)
.+.++|+ +|+.+ . ...|+.++ ..|+.+.+....+... ...+.+||+ |.+... ...|+.++ .++ .+.+
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~L 272 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQI 272 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEc
Confidence 5566775 55433 2 35688888 4566666554344444 566888985 544322 23588888 566 5555
Q ss_pred eeccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCC
Q 017317 151 ASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE 229 (373)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg 229 (373)
... .+ .-....+.||| .|+|+... .....||++|.++++.+.+..... .+ ..++|||
T Consensus 273 T~~-~~----~d~~p~~SPDG~~I~F~Sdr---------------~g~~~Iy~~dl~~g~~~rlt~~g~-~~-~~~SPDG 330 (419)
T PRK04043 273 TNY-PG----IDVNGNFVEDDKRIVFVSDR---------------LGYPNIFMKKLNSGSVEQVVFHGK-NN-SSVSTYK 330 (419)
T ss_pred ccC-CC----ccCccEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEeCccCCC-cC-ceECCCC
Confidence 432 11 01123688999 58887532 123479999999888765543211 12 4899999
Q ss_pred CEEEEEeCCC--------CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEecCCCchhhhccCChHHHH
Q 017317 230 DYLVVCETFK--------FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQLSSPGLEFVHTSKATKH 300 (373)
Q Consensus 230 ~~l~v~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~~~~~~~~~~~~~~p~~~~ 300 (373)
+.+.++.... ..|+.+++++.. .+.+... +.-....+.+||+ |++++..+.
T Consensus 331 ~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---~~~LT~~--~~~~~p~~SPDG~~I~f~~~~~~--------------- 390 (419)
T PRK04043 331 NYIVYSSRETNNEFGKNTFNLYLISTNSDY---IRRLTAN--GVNQFPRFSSDGGSIMFIKYLGN--------------- 390 (419)
T ss_pred CEEEEEEcCCCcccCCCCcEEEEEECCCCC---eEECCCC--CCcCCeEECCCCCEEEEEEccCC---------------
Confidence 9888776543 478888876543 2222211 2222366789996 555544321
Q ss_pred HHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCc
Q 017317 301 LLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGK 340 (373)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~ 340 (373)
...+..++.+|+....+....|.
T Consensus 391 -----------------~~~L~~~~l~g~~~~~l~~~~g~ 413 (419)
T PRK04043 391 -----------------QSALGIIRLNYNKSFLFPLKVGK 413 (419)
T ss_pred -----------------cEEEEEEecCCCeeEEeecCCCc
Confidence 23477888899877777654553
No 69
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.13 E-value=0.00091 Score=58.60 Aligned_cols=156 Identities=15% Similarity=0.148 Sum_probs=104.8
Q ss_pred cccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE--eecCCCCcceEEEccCCCEEEEEeC
Q 017317 160 NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI--LLDSLFFANGVALSKDEDYLVVCET 237 (373)
Q Consensus 160 ~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~--~~~~~~~~~gi~~~~dg~~l~v~~~ 237 (373)
.+..++.+..+|.||-+++. | +...|.++|++++++.. -.+.-.+..|+++..| .+|.-..
T Consensus 45 aFTQGL~~~~~g~LyESTG~--y-------------G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTW 107 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGL--Y-------------GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTW 107 (264)
T ss_dssp -EEEEEEEEETTEEEEEECS--T-------------TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEES
T ss_pred ccCccEEecCCCEEEEeCCC--C-------------CcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEe
Confidence 46678899889999999875 2 23579999999988653 3455667899998855 5999998
Q ss_pred CCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCc
Q 017317 238 FKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHK 317 (373)
Q Consensus 238 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 317 (373)
.++..++||.+. ......+. .++--.|++.|. .+||++....
T Consensus 108 k~~~~f~yd~~t--l~~~~~~~--y~~EGWGLt~dg-~~Li~SDGS~--------------------------------- 149 (264)
T PF05096_consen 108 KEGTGFVYDPNT--LKKIGTFP--YPGEGWGLTSDG-KRLIMSDGSS--------------------------------- 149 (264)
T ss_dssp SSSEEEEEETTT--TEEEEEEE---SSS--EEEECS-SCEEEE-SSS---------------------------------
T ss_pred cCCeEEEEcccc--ceEEEEEe--cCCcceEEEcCC-CEEEEECCcc---------------------------------
Confidence 889999999653 33334443 234557888653 3788887654
Q ss_pred cEEEEEECCC-CcEEEEEeC-CCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCCC
Q 017317 318 KAAVVNVAAN-GIVIRKFED-PNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA 372 (373)
Q Consensus 318 ~g~v~~~~~~-g~~~~~~~~-~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~~ 372 (373)
.+..+||+ -+....+.. .+|.....+-.+...+|.||.--+..|.|.++++.+
T Consensus 150 --~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~t 204 (264)
T PF05096_consen 150 --RLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPET 204 (264)
T ss_dssp --EEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT
T ss_pred --ceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCC
Confidence 36778864 345444433 245666677788888999999999999999999875
No 70
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.12 E-value=0.0027 Score=55.51 Aligned_cols=210 Identities=19% Similarity=0.155 Sum_probs=111.0
Q ss_pred CCeEEEEEc-CCceEEeeee---cCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeeccCCccccccceeEEcC
Q 017317 96 DGWIKRLHK-NGTWENWKLI---GGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAAT 169 (373)
Q Consensus 96 ~g~I~~~~~-~g~~~~~~~~---~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~ 169 (373)
+|.|..+|. +|+..--... ...+. ...+..++.+|+++....|+.+| .+| ...-.. ..+ +...+ ..-.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~-~~~-~~~~~---~~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPV-ATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFD-LPG-PISGA---PVVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEE-ETEEEETTEEEEEETTSEEEEEETTTSEEEEEEE-CSS-CGGSG---EEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCcc-ceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEee-ccc-cccce---eeec
Confidence 466777774 5543211111 11112 11343578999998778899999 688 433222 121 11111 2334
Q ss_pred CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-c-C---CCCcceEEEccCCCEEEEEeCCCCeEEE
Q 017317 170 DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-D-S---LFFANGVALSKDEDYLVVCETFKFRCLK 244 (373)
Q Consensus 170 dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~-~---~~~~~gi~~~~dg~~l~v~~~~~~~i~~ 244 (373)
++.+|+.... +.|+.+|..+|+..... . . ...........+++.+++... ...|+.
T Consensus 76 ~~~v~v~~~~------------------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~ 136 (238)
T PF13360_consen 76 GGRVYVGTSD------------------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVA 136 (238)
T ss_dssp TTEEEEEETT------------------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEE
T ss_pred ccccccccce------------------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEE
Confidence 6788888643 58999998878765431 1 1 111122233334666777764 568999
Q ss_pred EEecCCCCcceeEEecCCCC-C-------CCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCC
Q 017317 245 YWLKGESKEQTEIFVENLPG-G-------PDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLH 316 (373)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~g-~-------p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 316 (373)
++.+..+.-..... ....+ . ..+-.+-.+|.++++...++
T Consensus 137 ~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~------------------------------- 184 (238)
T PF13360_consen 137 LDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR------------------------------- 184 (238)
T ss_dssp EETTTTEEEEEEES-STT-SS--EEEETTEEEEEECCTTEEEEECCTSS-------------------------------
T ss_pred EecCCCcEEEEeec-CCCCCCcceeeecccccceEEECCEEEEEcCCCe-------------------------------
Confidence 98654322111111 11010 0 00111223567888876652
Q ss_pred ccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCCC
Q 017317 317 KKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA 372 (373)
Q Consensus 317 ~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~~ 372 (373)
++.+| ..|+.+. ..+.+. ........++.||+++ ....|..+++..
T Consensus 185 ----~~~~d~~tg~~~w--~~~~~~---~~~~~~~~~~~l~~~~-~~~~l~~~d~~t 231 (238)
T PF13360_consen 185 ----VVAVDLATGEKLW--SKPISG---IYSLPSVDGGTLYVTS-SDGRLYALDLKT 231 (238)
T ss_dssp ----EEEEETTTTEEEE--EECSS----ECECEECCCTEEEEEE-TTTEEEEEETTT
T ss_pred ----EEEEECCCCCEEE--EecCCC---ccCCceeeCCEEEEEe-CCCEEEEEECCC
Confidence 45556 4565443 222211 1222455678999999 778899999874
No 71
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.12 E-value=0.0066 Score=57.17 Aligned_cols=188 Identities=16% Similarity=0.243 Sum_probs=117.4
Q ss_pred EeccCCcCCcceEEEecCC-CEEEEecCCeEEEEE-cCCceEEee-e-ecCccccCeEECCCCcEEEEECCCcEEEEe-c
Q 017317 70 RLGEGILNGPEDVCVDRNG-VLYTATRDGWIKRLH-KNGTWENWK-L-IGGDTLLGITTTQENEILVCDADKGLLKVT-E 144 (373)
Q Consensus 70 ~~~~g~~~~P~~ia~d~~G-~l~v~~~~g~I~~~~-~~g~~~~~~-~-~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~ 144 (373)
+...|--..-.++++.++| .||.++.+|.|..++ ..|.-..+. . ...... +|+.+..+.++.+.....|.+++ .
T Consensus 314 ~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~-~~~~~~~~~~~t~g~Dd~l~~~~~~ 392 (603)
T KOG0318|consen 314 KVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK-GMAASESGELFTIGWDDTLRVISLK 392 (603)
T ss_pred heecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEE-EEeecCCCcEEEEecCCeEEEEecc
Confidence 3334444556677887755 477899999999998 334322221 1 123456 88888878999887766676666 3
Q ss_pred -CC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcc
Q 017317 145 -EG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN 221 (373)
Q Consensus 145 -~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~ 221 (373)
+| .....-... ..|-++++.++|. +.++.. ..|..+...++-.+ ..-...+.
T Consensus 393 ~~~~t~~~~~~lg----~QP~~lav~~d~~~avv~~~-------------------~~iv~l~~~~~~~~--~~~~y~~s 447 (603)
T KOG0318|consen 393 DNGYTKSEVVKLG----SQPKGLAVLSDGGTAVVACI-------------------SDIVLLQDQTKVSS--IPIGYESS 447 (603)
T ss_pred cCcccccceeecC----CCceeEEEcCCCCEEEEEec-------------------CcEEEEecCCccee--eccccccc
Confidence 33 111111111 2466899998874 445542 34555543323222 22346788
Q ss_pred eEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCC
Q 017317 222 GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLS 285 (373)
Q Consensus 222 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~ 285 (373)
+++++||++.+.|.. .+..++.|-+.|.......... ...+-+..+++.+||.+++++-..|
T Consensus 448 ~vAv~~~~~~vaVGG-~Dgkvhvysl~g~~l~ee~~~~-~h~a~iT~vaySpd~~yla~~Da~r 509 (603)
T KOG0318|consen 448 AVAVSPDGSEVAVGG-QDGKVHVYSLSGDELKEEAKLL-EHRAAITDVAYSPDGAYLAAGDASR 509 (603)
T ss_pred eEEEcCCCCEEEEec-ccceEEEEEecCCcccceeeee-cccCCceEEEECCCCcEEEEeccCC
Confidence 999999999666654 4567999999886543322222 3446678899999999988876654
No 72
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.11 E-value=0.00085 Score=58.78 Aligned_cols=148 Identities=20% Similarity=0.247 Sum_probs=92.8
Q ss_pred cceEEEecCCCEEEEe-cCCeEEEEEcCC-ceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEecCC---cEEEeec
Q 017317 79 PEDVCVDRNGVLYTAT-RDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG---VTVLASH 153 (373)
Q Consensus 79 P~~ia~d~~G~l~v~~-~~g~I~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g---~~~l~~~ 153 (373)
-|++++- ++.||.=+ .++..+++|++. +...-....+... ||+.| ...||+.|....|+.+|+.. .+.+.-.
T Consensus 92 gEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGW-GLt~d-g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 92 GEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGW-GLTSD-GKRLIMSDGSSRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS---EEEEC-SSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred ceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEecCCcce-EEEcC-CCEEEEECCccceEEECCcccceEEEEEEE
Confidence 5666666 56788555 567778888542 2211122346678 99976 34799999878899998533 3333333
Q ss_pred cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-----------C-----C
Q 017317 154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-----------S-----L 217 (373)
Q Consensus 154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-----------~-----~ 217 (373)
..+.+....|-|..- +|.||.-... +..|.++||.+|++....+ . .
T Consensus 169 ~~g~pv~~LNELE~i-~G~IyANVW~-----------------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~ 230 (264)
T PF05096_consen 169 DNGRPVSNLNELEYI-NGKIYANVWQ-----------------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDD 230 (264)
T ss_dssp ETTEE---EEEEEEE-TTEEEEEETT-----------------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TT
T ss_pred ECCEECCCcEeEEEE-cCEEEEEeCC-----------------CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccC
Confidence 466677778888765 7999987654 3689999999999876421 1 1
Q ss_pred CCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 017317 218 FFANGVALSKDEDYLVVCETFKFRCLKYWL 247 (373)
Q Consensus 218 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~ 247 (373)
..-||||++++.+.+||+.-.=..++++.+
T Consensus 231 dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l 260 (264)
T PF05096_consen 231 DVLNGIAYDPETDRLFVTGKLWPKLYEVKL 260 (264)
T ss_dssp S-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred CeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence 235899999999999999754456666544
No 73
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.11 E-value=0.006 Score=58.68 Aligned_cols=155 Identities=10% Similarity=0.059 Sum_probs=85.3
Q ss_pred eEEEEEcCCce-EEeeeecCccccCeEECCCCc-EEEEECC---CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCC
Q 017317 98 WIKRLHKNGTW-ENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD 170 (373)
Q Consensus 98 ~I~~~~~~g~~-~~~~~~~~~p~~gl~~d~~g~-L~va~~~---~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~d 170 (373)
.|+..|.+|.. +.+........ ..++.+||+ |+++... ..|+.++ .+| .+.+.. ..+ .....++.||
T Consensus 177 ~L~~~D~dG~~~~~l~~~~~~v~-~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-~~g----~~~~~~~SPD 250 (427)
T PRK02889 177 QLQISDADGQNAQSALSSPEPII-SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-FKG----SNSAPAWSPD 250 (427)
T ss_pred EEEEECCCCCCceEeccCCCCcc-cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-CCC----CccceEECCC
Confidence 45555544432 22222223334 778999996 4444322 2388888 666 554432 222 2236789999
Q ss_pred Cc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeC--CCCeEEEEEe
Q 017317 171 GS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET--FKFRCLKYWL 247 (373)
Q Consensus 171 G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~--~~~~i~~~~~ 247 (373)
|+ |+++... .....||.+|.+++..+.+...........|+|||+.++++.. +...|+.++.
T Consensus 251 G~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~ 315 (427)
T PRK02889 251 GRTLAVALSR---------------DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA 315 (427)
T ss_pred CCEEEEEEcc---------------CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC
Confidence 94 6665322 1234799999887766655333223345789999998877643 2345777765
Q ss_pred cCCCCcceeEEecCCCCCCCceeECCCCCE
Q 017317 248 KGESKEQTEIFVENLPGGPDNIKLAPDGSF 277 (373)
Q Consensus 248 ~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l 277 (373)
.+... +... ..........+++||+.
T Consensus 316 ~~g~~---~~lt-~~g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 316 SGGAA---QRVT-FTGSYNTSPRISPDGKL 341 (427)
T ss_pred CCCce---EEEe-cCCCCcCceEECCCCCE
Confidence 54322 1111 11122334667888874
No 74
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.11 E-value=0.0027 Score=61.16 Aligned_cols=134 Identities=11% Similarity=0.130 Sum_probs=80.2
Q ss_pred CeEECCCCc-EEEEECC---CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCcccccccccccccc
Q 017317 121 GITTTQENE-ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLE 193 (373)
Q Consensus 121 gl~~d~~g~-L~va~~~---~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~ 193 (373)
+.++.+||+ |+.+... ..|+.++ .+| .+.+.. ..+ ......++|||+ |+++.+.
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~-~~g----~~~~~~~SpDG~~l~~~~s~-------------- 268 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS-FRG----INGAPSFSPDGRRLALTLSR-------------- 268 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc-CCC----CccCceECCCCCEEEEEEeC--------------
Confidence 778889996 4444322 2378888 566 554432 122 123568999995 6665322
Q ss_pred ccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEecCCCCcceeEEecCCCCCCCceeE
Q 017317 194 AKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF--KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKL 271 (373)
Q Consensus 194 ~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~ 271 (373)
.....||.+|.++++.+.+..........+|++||+.++++... ...|+.+++.+... +... .........++
T Consensus 269 -~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~---~~lt-~~g~~~~~~~~ 343 (433)
T PRK04922 269 -DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA---ERLT-FQGNYNARASV 343 (433)
T ss_pred -CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEee-cCCCCccCEEE
Confidence 12347999999888776654433334567899999988876533 24588887655332 1121 11123345778
Q ss_pred CCCCCEE
Q 017317 272 APDGSFW 278 (373)
Q Consensus 272 d~dG~lw 278 (373)
++||+..
T Consensus 344 SpDG~~I 350 (433)
T PRK04922 344 SPDGKKI 350 (433)
T ss_pred CCCCCEE
Confidence 8899643
No 75
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.10 E-value=0.0057 Score=58.52 Aligned_cols=156 Identities=15% Similarity=0.119 Sum_probs=89.9
Q ss_pred eEEEEEcCCceEEeeeecCccccCeEECCCCc--EEEEECC---CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCC
Q 017317 98 WIKRLHKNGTWENWKLIGGDTLLGITTTQENE--ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD 170 (373)
Q Consensus 98 ~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~--L~va~~~---~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~d 170 (373)
+|+..|.+|.-.......+... ...+.+||+ +|+.... ..|+.++ .+| .+.+.. ..+ ......+.||
T Consensus 170 ~l~~~d~dg~~~~~~~~~~~~~-~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g----~~~~~~~SPD 243 (419)
T PRK04043 170 NIVLADYTLTYQKVIVKGGLNI-FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQG----MLVVSDVSKD 243 (419)
T ss_pred eEEEECCCCCceeEEccCCCeE-eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCC----cEEeeEECCC
Confidence 5666666664322221223234 677889985 5554332 3488888 677 666643 222 1123468899
Q ss_pred C-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEe
Q 017317 171 G-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF--KFRCLKYWL 247 (373)
Q Consensus 171 G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~ 247 (373)
| .|.++... .....||.+|.++++.+.+......-....|+|||+.++++... ...|+++++
T Consensus 244 G~~la~~~~~---------------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl 308 (419)
T PRK04043 244 GSKLLLTMAP---------------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKL 308 (419)
T ss_pred CCEEEEEEcc---------------CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEEC
Confidence 9 57666432 13468999998888766653322222345799999988887643 237888888
Q ss_pred cCCCCcceeEEecCCCCCCCceeECCCCCEEEE
Q 017317 248 KGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280 (373)
Q Consensus 248 ~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva 280 (373)
++.... ..... +. .+...++||...+-
T Consensus 309 ~~g~~~---rlt~~--g~-~~~~~SPDG~~Ia~ 335 (419)
T PRK04043 309 NSGSVE---QVVFH--GK-NNSSVSTYKNYIVY 335 (419)
T ss_pred CCCCeE---eCccC--CC-cCceECCCCCEEEE
Confidence 764322 22111 11 23477888974433
No 76
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=98.10 E-value=0.002 Score=57.05 Aligned_cols=125 Identities=15% Similarity=0.151 Sum_probs=78.6
Q ss_pred ceEEEcc--CCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCC-----CCceeECCCCCEEEEEecCCCchhhhcc
Q 017317 221 NGVALSK--DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGG-----PDNIKLAPDGSFWIAILQLSSPGLEFVH 293 (373)
Q Consensus 221 ~gi~~~~--dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~-----p~~i~~d~dG~lwva~~~~~~~~~~~~~ 293 (373)
.|+++.. .+++||.++..+.+|.+||-.=.+......|. .|.. |-||. .-.|+|||+-......-.+
T Consensus 141 kGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~--DP~iPagyAPFnIq-nig~~lyVtYA~qd~~~~d--- 214 (336)
T TIGR03118 141 KGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI--DPALPAGYAPFNVQ-NLGGTLYVTYAQQDADRND--- 214 (336)
T ss_pred eeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc--CCCCCCCCCCcceE-EECCeEEEEEEecCCcccc---
Confidence 5777764 36789999999999999973211111111222 2333 44443 3467899986532110000
Q ss_pred CChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEE--e-----CCEEEEeeCCCCeEE
Q 017317 294 TSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALE--F-----DDHLYLGSLNTNFIG 366 (373)
Q Consensus 294 ~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~--~-----~g~L~vgs~~~~~i~ 366 (373)
+ -.....|.|-.||.+|+.++.+.+..- .+.+..+.. . .|.|.||+++.-+|-
T Consensus 215 ----------------~--v~G~G~G~VdvFd~~G~l~~r~as~g~--LNaPWG~a~APa~FG~~sg~lLVGNFGDG~In 274 (336)
T TIGR03118 215 ----------------E--VAGAGLGYVNVFTLNGQLLRRVASSGR--LNAPWGLAIAPESFGSLSGALLVGNFGDGTIN 274 (336)
T ss_pred ----------------c--ccCCCcceEEEEcCCCcEEEEeccCCc--ccCCceeeeChhhhCCCCCCeEEeecCCceeE
Confidence 0 025677889999999999999864332 455555543 1 378999999999999
Q ss_pred EeeCC
Q 017317 367 KLPLK 371 (373)
Q Consensus 367 ~~~l~ 371 (373)
.++..
T Consensus 275 aFD~~ 279 (336)
T TIGR03118 275 AYDPQ 279 (336)
T ss_pred EecCC
Confidence 98875
No 77
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.0027 Score=55.96 Aligned_cols=157 Identities=11% Similarity=0.069 Sum_probs=96.5
Q ss_pred EeccCCcCCcceEEEecCCCEEE-EecCCeEEEEEcC-CceEEeeeecCccccCeEECCCCcEEEEECCC-cEEEEe-c-
Q 017317 70 RLGEGILNGPEDVCVDRNGVLYT-ATRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADK-GLLKVT-E- 144 (373)
Q Consensus 70 ~~~~g~~~~P~~ia~d~~G~l~v-~~~~g~I~~~~~~-g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~-gl~~~~-~- 144 (373)
+.+.|--..-.+|.+.|.+..++ ++.+..|..||.. -+-.......++|. .++|++|-++++..+. .|-.+| +
T Consensus 94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs 171 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLRS 171 (311)
T ss_pred EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEecc
Confidence 33444444456677777667774 4467778777722 12122223344554 7899999888764443 455566 3
Q ss_pred --CC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC----
Q 017317 145 --EG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS---- 216 (373)
Q Consensus 145 --~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~---- 216 (373)
.| .+.+.-.. ......++|.+.+||. |.+++.. +-++.+|.-+|.+..-...
T Consensus 172 ~dkgPF~tf~i~~--~~~~ew~~l~FS~dGK~iLlsT~~------------------s~~~~lDAf~G~~~~tfs~~~~~ 231 (311)
T KOG1446|consen 172 FDKGPFTTFSITD--NDEAEWTDLEFSPDGKSILLSTNA------------------SFIYLLDAFDGTVKSTFSGYPNA 231 (311)
T ss_pred cCCCCceeEccCC--CCccceeeeEEcCCCCEEEEEeCC------------------CcEEEEEccCCcEeeeEeeccCC
Confidence 45 55543221 2234578999999995 6777643 6788888777765443332
Q ss_pred CCCcceEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317 217 LFFANGVALSKDEDYLVVCETFKFRCLKYWLKG 249 (373)
Q Consensus 217 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~ 249 (373)
...|-+-.++||+++++.+ ..+++|+.|++..
T Consensus 232 ~~~~~~a~ftPds~Fvl~g-s~dg~i~vw~~~t 263 (311)
T KOG1446|consen 232 GNLPLSATFTPDSKFVLSG-SDDGTIHVWNLET 263 (311)
T ss_pred CCcceeEEECCCCcEEEEe-cCCCcEEEEEcCC
Confidence 2334477889999955554 5678999998753
No 78
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.04 E-value=0.0035 Score=60.39 Aligned_cols=172 Identities=15% Similarity=0.135 Sum_probs=98.8
Q ss_pred ceEEEecCCCEE--EEec--CCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEE-CCC--cEEEEe-cCC-cE
Q 017317 80 EDVCVDRNGVLY--TATR--DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCD-ADK--GLLKVT-EEG-VT 148 (373)
Q Consensus 80 ~~ia~d~~G~l~--v~~~--~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~-~~~--gl~~~~-~~g-~~ 148 (373)
.+..+.|+|+.. +... +..|+.++ ..|+.+.+....+... .+++.+||+ |+++. ..+ .|+.++ .++ .+
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~ 285 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS 285 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE
Confidence 445777887633 3322 24688888 4455544443334445 788999996 54443 222 367777 455 55
Q ss_pred EEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEcc
Q 017317 149 VLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK 227 (373)
Q Consensus 149 ~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~ 227 (373)
.+... . .......+.|||+ |+++... ...-.||.++..++..+.+ .... ....++|
T Consensus 286 ~lt~~-~----~~~~~~~wSpDG~~i~f~s~~---------------~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~Sp 342 (429)
T PRK01742 286 QLTSG-A----GNNTEPSWSPDGQSILFTSDR---------------SGSPQVYRMSASGGGASLV-GGRG--YSAQISA 342 (429)
T ss_pred eeccC-C----CCcCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEe-cCCC--CCccCCC
Confidence 44321 1 1245678999996 6665321 1234789998876655544 2211 3467999
Q ss_pred CCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317 228 DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL 282 (373)
Q Consensus 228 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~ 282 (373)
||+.++++.. ..++++|+.+.. ....... .......+++||++.+...
T Consensus 343 DG~~ia~~~~--~~i~~~Dl~~g~---~~~lt~~--~~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 343 DGKTLVMING--DNVVKQDLTSGS---TEVLSST--FLDESPSISPNGIMIIYSS 390 (429)
T ss_pred CCCEEEEEcC--CCEEEEECCCCC---eEEecCC--CCCCCceECCCCCEEEEEE
Confidence 9998887754 568888875432 1222111 1123466889998655543
No 79
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=98.04 E-value=0.0014 Score=58.49 Aligned_cols=192 Identities=14% Similarity=0.130 Sum_probs=114.8
Q ss_pred CcCCcceEEEecCCCEEEEecCCeEEEE---E---cCCceE-----Eee----ee--cCccccCeEECCCCcEEEEECC-
Q 017317 75 ILNGPEDVCVDRNGVLYTATRDGWIKRL---H---KNGTWE-----NWK----LI--GGDTLLGITTTQENEILVCDAD- 136 (373)
Q Consensus 75 ~~~~P~~ia~d~~G~l~v~~~~g~I~~~---~---~~g~~~-----~~~----~~--~~~p~~gl~~d~~g~L~va~~~- 136 (373)
.+..|++++.. .++||+++.. .|+++ + ..++.. .+. .. .-..+ .|++ .++.+|+.+..
T Consensus 47 ~F~r~MGl~~~-~~~l~~~t~~-qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiH-dia~-~~~~l~fVNT~f 122 (335)
T TIGR03032 47 TFPRPMGLAVS-PQSLTLGTRY-QLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAH-DLAL-GAGRLLFVNTLF 122 (335)
T ss_pred ccCccceeeee-CCeEEEEEcc-eeEEcccccccccccccCCCCCeEEeeeeeeeccCcchh-heee-cCCcEEEEECcc
Confidence 37889999997 5789998854 57777 3 111110 010 01 12346 7888 56788776543
Q ss_pred CcEEEEecCC-cEEE-----eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE
Q 017317 137 KGLLKVTEEG-VTVL-----ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET 210 (373)
Q Consensus 137 ~gl~~~~~~g-~~~l-----~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~ 210 (373)
.-+..+++.- .... .+....+.--..|+|+.....--||+.-+ ..+....=.+.+.+|++. +|-.++
T Consensus 123 SCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~----~sD~~~gWR~~~~~gG~v-idv~s~-- 195 (335)
T TIGR03032 123 SCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALS----QSDVADGWREGRRDGGCV-IDIPSG-- 195 (335)
T ss_pred eeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEee----ccCCcccccccccCCeEE-EEeCCC--
Confidence 4456666433 2221 11111111124688888643357877422 222111112233445554 665555
Q ss_pred EEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCE-EEEEecCC
Q 017317 211 SILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF-WIAILQLS 285 (373)
Q Consensus 211 ~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l-wva~~~~~ 285 (373)
+.+.+++.+|++--|.. |+ ||+++++.+.+.+++.+ .+..+... ..+|+|.|+.+. |++ +|+....|
T Consensus 196 evl~~GLsmPhSPRWhd-gr-LwvldsgtGev~~vD~~---~G~~e~Va-~vpG~~rGL~f~--G~llvVgmSk~R 263 (335)
T TIGR03032 196 EVVASGLSMPHSPRWYQ-GK-LWLLNSGRGELGYVDPQ---AGKFQPVA-FLPGFTRGLAFA--GDFAFVGLSKLR 263 (335)
T ss_pred CEEEcCccCCcCCcEeC-Ce-EEEEECCCCEEEEEcCC---CCcEEEEE-ECCCCCccccee--CCEEEEEecccc
Confidence 45788999999988874 44 99999999999999854 24455554 678999999997 765 56666665
No 80
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.98 E-value=0.012 Score=55.47 Aligned_cols=184 Identities=18% Similarity=0.210 Sum_probs=101.9
Q ss_pred cceEEEecCCCEEE-EecCCeEEEEE-cCCceEE-ee---eecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC--cE
Q 017317 79 PEDVCVDRNGVLYT-ATRDGWIKRLH-KNGTWEN-WK---LIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG--VT 148 (373)
Q Consensus 79 P~~ia~d~~G~l~v-~~~~g~I~~~~-~~g~~~~-~~---~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g--~~ 148 (373)
-.++-+.|||..++ ...+|.|+.+| .+|+..- +. ...+... +|++.||+.-++ +..++.+-.+| .+. .+
T Consensus 193 V~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf-alsWsPDs~~~~T~SaDkt~KIWdVs~~slv~ 271 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF-ALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS 271 (603)
T ss_pred eeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE-EEEECCCCceEEEecCCceEEEEEeeccceEE
Confidence 35677889999995 44889999999 6675433 22 1234456 888888885443 34334344444 222 22
Q ss_pred EEee--ccCC------------------------------------ccccccceeEEcCCCcEEEEeCCccccccccccc
Q 017317 149 VLAS--HVNG------------------------------------SRINLADDLIAATDGSIYFSVASTKFGLHNWGLD 190 (373)
Q Consensus 149 ~l~~--~~~~------------------------------------~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~ 190 (373)
.+.. .... .....+.++++.+||...++
T Consensus 272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~S-------------- 337 (603)
T KOG0318|consen 272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYS-------------- 337 (603)
T ss_pred EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEe--------------
Confidence 2211 0000 01123444555555533233
Q ss_pred cccccCCceEEEEeCCCCeEEEeecCC--CCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCc
Q 017317 191 LLEAKPHGKLLKYDPSLNETSILLDSL--FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDN 268 (373)
Q Consensus 191 ~~~~~~~g~l~~~d~~~~~~~~~~~~~--~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~ 268 (373)
+...|.|..++..++....+.... ..-.+++.+..+. ++ +...++.+.++.+.+......+.+ .+...|.+
T Consensus 338 ---gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~-t~g~Dd~l~~~~~~~~~~t~~~~~--~lg~QP~~ 410 (603)
T KOG0318|consen 338 ---GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LF-TIGWDDTLRVISLKDNGYTKSEVV--KLGSQPKG 410 (603)
T ss_pred ---eccCceEEEEecCCccccccccccccceEEEEeecCCCc-EE-EEecCCeEEEEecccCccccccee--ecCCCcee
Confidence 234578888887666544443222 2335666665454 44 445678899988766544444332 24456889
Q ss_pred eeECCCCCEE-EEEecC
Q 017317 269 IKLAPDGSFW-IAILQL 284 (373)
Q Consensus 269 i~~d~dG~lw-va~~~~ 284 (373)
++..++|.+- +++...
T Consensus 411 lav~~d~~~avv~~~~~ 427 (603)
T KOG0318|consen 411 LAVLSDGGTAVVACISD 427 (603)
T ss_pred EEEcCCCCEEEEEecCc
Confidence 9999998654 444443
No 81
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.96 E-value=0.015 Score=56.01 Aligned_cols=133 Identities=16% Similarity=0.136 Sum_probs=78.4
Q ss_pred CeEECCCCc-E-EEEECC--CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCcccccccccccccc
Q 017317 121 GITTTQENE-I-LVCDAD--KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLE 193 (373)
Q Consensus 121 gl~~d~~g~-L-~va~~~--~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~ 193 (373)
...+.+||+ | |+.... ..|+.++ .+| .+.+.. ..+ ......+.|||+ |+++...
T Consensus 203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-~~g----~~~~~~~SpDG~~la~~~~~-------------- 263 (430)
T PRK00178 203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-FEG----LNGAPAWSPDGSKLAFVLSK-------------- 263 (430)
T ss_pred eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-CCC----CcCCeEECCCCCEEEEEEcc--------------
Confidence 778889996 4 444322 2478888 666 555432 121 123568899995 6665422
Q ss_pred ccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEecCCCCcceeEEecCCCCCCCceeE
Q 017317 194 AKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF--KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKL 271 (373)
Q Consensus 194 ~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~ 271 (373)
.....||.+|.++++.+.+...........|++||+.++++... ...|+++++.+.+. +.+... .........
T Consensus 264 -~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~---~~lt~~-~~~~~~~~~ 338 (430)
T PRK00178 264 -DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA---ERVTFV-GNYNARPRL 338 (430)
T ss_pred -CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEeecC-CCCccceEE
Confidence 12247999999888776654433334557899999988776532 34688888755432 222111 112234567
Q ss_pred CCCCCE
Q 017317 272 APDGSF 277 (373)
Q Consensus 272 d~dG~l 277 (373)
++||+.
T Consensus 339 Spdg~~ 344 (430)
T PRK00178 339 SADGKT 344 (430)
T ss_pred CCCCCE
Confidence 788864
No 82
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.009 Score=57.98 Aligned_cols=181 Identities=18% Similarity=0.193 Sum_probs=103.6
Q ss_pred cceEEEecCCCEEEEe-cCCeEEEEEc-CCc--eEEeeeec-CccccCeEECCCCcEEEEEC-CCcEEEEe-cC-C--cE
Q 017317 79 PEDVCVDRNGVLYTAT-RDGWIKRLHK-NGT--WENWKLIG-GDTLLGITTTQENEILVCDA-DKGLLKVT-EE-G--VT 148 (373)
Q Consensus 79 P~~ia~d~~G~l~v~~-~~g~I~~~~~-~g~--~~~~~~~~-~~p~~gl~~d~~g~L~va~~-~~gl~~~~-~~-g--~~ 148 (373)
-.++.+.++|+..+.. .++.+..+.. .++ ........ .... .+++.++|...++.. +..+..++ ++ + .+
T Consensus 162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~-~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~ 240 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVS-DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLK 240 (456)
T ss_pred eEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccccccccee-eeEECCCCcEEEEecCCceEEEeeccCCCeEEE
Confidence 3345667788876544 5555554443 222 11111111 2245 889999998666533 34455566 33 3 33
Q ss_pred EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-CCcceEEEcc
Q 017317 149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVALSK 227 (373)
Q Consensus 149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~~~gi~~~~ 227 (373)
.+..+ ...+++++|.++|++.++.+. .+.|..+|..+++........ ..-+++++++
T Consensus 241 ~l~gH-----~~~v~~~~f~p~g~~i~Sgs~-----------------D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 241 TLKGH-----STYVTSVAFSPDGNLLVSGSD-----------------DGTVRIWDVRTGECVRKLKGHSDGISGLAFSP 298 (456)
T ss_pred EecCC-----CCceEEEEecCCCCEEEEecC-----------------CCcEEEEeccCCeEEEeeeccCCceEEEEECC
Confidence 33221 235689999999988888654 467777787776665544443 3457899999
Q ss_pred CCCEEEEEeCCCCeEEEEEecCCCCcceeEEecC-CCCCCCceeECCCCCE-EEEEec
Q 017317 228 DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN-LPGGPDNIKLAPDGSF-WIAILQ 283 (373)
Q Consensus 228 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~g~p~~i~~d~dG~l-wva~~~ 283 (373)
|++.++.+ ..++.|..||.......-....... .+.....+.++++|.+ |++..+
T Consensus 299 d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 299 DGNLLVSA-SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD 355 (456)
T ss_pred CCCEEEEc-CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC
Confidence 99955555 6677888888765431101111111 1111255778899964 444443
No 83
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.93 E-value=0.014 Score=55.80 Aligned_cols=175 Identities=15% Similarity=0.145 Sum_probs=100.3
Q ss_pred EEEecCCCEE-EEe-c--CCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECC---CcEEEEe-cCC-cEEE
Q 017317 82 VCVDRNGVLY-TAT-R--DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VTVL 150 (373)
Q Consensus 82 ia~d~~G~l~-v~~-~--~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~---~gl~~~~-~~g-~~~l 150 (373)
.++.++|+.. ... . ...|+.++ .+|+.+.+....+... ++++.+||+ |+++... ..|+.++ .++ .+.+
T Consensus 195 p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l 273 (417)
T TIGR02800 195 PAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL 273 (417)
T ss_pred ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC
Confidence 3466667633 333 2 24688888 4555554443344455 788999986 6554322 2488888 555 4444
Q ss_pred eeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCC
Q 017317 151 ASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE 229 (373)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg 229 (373)
... .+ ......+.+||+ |+++... .....||.+|.++++.+.+...........+++||
T Consensus 274 ~~~-~~----~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg 333 (417)
T TIGR02800 274 TNG-PG----IDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDG 333 (417)
T ss_pred CCC-CC----CCCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccCeEECCCC
Confidence 321 11 122446788885 5554321 12247999998877766554444445678899999
Q ss_pred CEEEEEeCCC--CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEe
Q 017317 230 DYLVVCETFK--FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAIL 282 (373)
Q Consensus 230 ~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~ 282 (373)
+.++++.... .+|+.+++.+. ....+.. ........+.+||+ |+++..
T Consensus 334 ~~i~~~~~~~~~~~i~~~d~~~~---~~~~l~~--~~~~~~p~~spdg~~l~~~~~ 384 (417)
T TIGR02800 334 DLIAFVHREGGGFNIAVMDLDGG---GERVLTD--TGLDESPSFAPNGRMILYATT 384 (417)
T ss_pred CEEEEEEccCCceEEEEEeCCCC---CeEEccC--CCCCCCceECCCCCEEEEEEe
Confidence 9888876543 36778876542 2222221 12233456778886 444443
No 84
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.87 E-value=0.028 Score=53.76 Aligned_cols=159 Identities=12% Similarity=0.072 Sum_probs=89.4
Q ss_pred eEEEEEcCCc-eEEeeeecCccccCeEECCCCc-EEEEECC---CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCC
Q 017317 98 WIKRLHKNGT-WENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD 170 (373)
Q Consensus 98 ~I~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~-L~va~~~---~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~d 170 (373)
.|+..+.+|. .+.+........ ...+++||+ |+.+... ..|+.++ .+| .+.+.. ..+ ....+++.+|
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~-~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~~----~~~~~~~spD 244 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPIL-SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FPG----MNGAPAFSPD 244 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCcee-cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CCC----CccceEECCC
Confidence 4666665443 333333222344 677889996 3333322 2477777 666 544432 121 2335788999
Q ss_pred Cc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeC--CCCeEEEEEe
Q 017317 171 GS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET--FKFRCLKYWL 247 (373)
Q Consensus 171 G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~--~~~~i~~~~~ 247 (373)
|. |+++... .....||.+|.++++.+.+...........|++||+.++++.. +...|+.+++
T Consensus 245 g~~l~~~~~~---------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 245 GSKLAVSLSK---------------DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred CCEEEEEECC---------------CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 95 7666432 1234699999887776655433222345689999998876643 2346888887
Q ss_pred cCCCCcceeEEecCCCCCCCceeECCCCCEEEEE
Q 017317 248 KGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI 281 (373)
Q Consensus 248 ~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~ 281 (373)
.+... ..+. ..........++++|+..+.+
T Consensus 310 ~~~~~---~~l~-~~~~~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 310 DGGEV---RRLT-FRGGYNASPSWSPDGDLIAFV 339 (417)
T ss_pred CCCCE---EEee-cCCCCccCeEECCCCCEEEEE
Confidence 65332 2222 112234456778888754443
No 85
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.85 E-value=0.007 Score=54.32 Aligned_cols=155 Identities=13% Similarity=0.129 Sum_probs=87.6
Q ss_pred EEEecCCCEEEEe------cCCeEEEEEcCCceE---EeeeecCccccCeEECCCC-cEEEEECC---------------
Q 017317 82 VCVDRNGVLYTAT------RDGWIKRLHKNGTWE---NWKLIGGDTLLGITTTQEN-EILVCDAD--------------- 136 (373)
Q Consensus 82 ia~d~~G~l~v~~------~~g~I~~~~~~g~~~---~~~~~~~~p~~gl~~d~~g-~L~va~~~--------------- 136 (373)
-++++||++...+ ..|.|-++|...... .+...+-.|+ -|.+.+|| .|.||+.+
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH-el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPH-ELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChh-hEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 4556677765444 347788888543333 3333445688 99999999 78888642
Q ss_pred ---CcEEEEe-cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE
Q 017317 137 ---KGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET 210 (373)
Q Consensus 137 ---~gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~ 210 (373)
-.|..+| .+| ++... -.+.....++..|+++++|.+|++.... +... + ..--|..++.. ...
T Consensus 135 tM~psL~~ld~~sG~ll~q~~-Lp~~~~~lSiRHLa~~~~G~V~~a~Q~q--g~~~------~--~~PLva~~~~g-~~~ 202 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVE-LPPDLHQLSIRHLAVDGDGTVAFAMQYQ--GDPG------D--APPLVALHRRG-GAL 202 (305)
T ss_pred hcCCceEEEecCCCceeeeee-cCccccccceeeEEecCCCcEEEEEecC--CCCC------c--cCCeEEEEcCC-Ccc
Confidence 1233333 333 11111 1112233467889999999999996531 1100 0 11123344433 222
Q ss_pred EEeec------CC-CCcceEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317 211 SILLD------SL-FFANGVALSKDEDYLVVCETFKFRCLKYWLKG 249 (373)
Q Consensus 211 ~~~~~------~~-~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~ 249 (373)
+.+.- .+ ...-.|+++.+++.+.++.-..+++..|+...
T Consensus 203 ~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 203 RLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred eeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence 22211 11 23356999999997888887778888887543
No 86
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.84 E-value=0.017 Score=50.32 Aligned_cols=219 Identities=14% Similarity=0.130 Sum_probs=132.1
Q ss_pred CEEEEecCCeEEEEEcC------CceE-EeeeecCccccCeEECCCCcEEEEECCCc-EEEEe-cCC--cEEEeeccCCc
Q 017317 89 VLYTATRDGWIKRLHKN------GTWE-NWKLIGGDTLLGITTTQENEILVCDADKG-LLKVT-EEG--VTVLASHVNGS 157 (373)
Q Consensus 89 ~l~v~~~~g~I~~~~~~------g~~~-~~~~~~~~p~~gl~~d~~g~L~va~~~~g-l~~~~-~~g--~~~l~~~~~~~ 157 (373)
.++.++.+-.|+.++.+ |... .+........ +++..+||+..++....+ +..+| .+| .+.+..+.
T Consensus 30 ~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~-dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~--- 105 (315)
T KOG0279|consen 30 ILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVS-DVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHT--- 105 (315)
T ss_pred eEEEcccceEEEEEEeccCccccCceeeeeeccceEec-ceEEccCCceEEeccccceEEEEEecCCcEEEEEEecC---
Confidence 44456667777776621 2221 2221122345 778889998877644444 45566 666 33343221
Q ss_pred cccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC--CCCcceEEEccCC-CEEEE
Q 017317 158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSKDE-DYLVV 234 (373)
Q Consensus 158 ~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~~gi~~~~dg-~~l~v 234 (373)
..+..+++++|.+-.++.+. ...|..+|..+...-.+.+. -...+-+.|+|.. +-+++
T Consensus 106 --~dVlsva~s~dn~qivSGSr-----------------DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 106 --KDVLSVAFSTDNRQIVSGSR-----------------DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred --CceEEEEecCCCceeecCCC-----------------cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence 24568899999988887543 34566677654433333333 3456778999986 43444
Q ss_pred EeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccC
Q 017317 235 CETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAP 314 (373)
Q Consensus 235 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 314 (373)
....+..+..+++.+-+... .+. ...++.+-+++++||.+-.....
T Consensus 167 s~s~DktvKvWnl~~~~l~~--~~~-gh~~~v~t~~vSpDGslcasGgk------------------------------- 212 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRT--TFI-GHSGYVNTVTVSPDGSLCASGGK------------------------------- 212 (315)
T ss_pred EccCCceEEEEccCCcchhh--ccc-cccccEEEEEECCCCCEEecCCC-------------------------------
Confidence 44455555556655433221 222 23456677889999998776322
Q ss_pred CCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCCC
Q 017317 315 LHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA 372 (373)
Q Consensus 315 ~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~~ 372 (373)
.|.++..| .+|+-++++.. +..+.++++.+++.|+.-.-+..|-..++..
T Consensus 213 ---dg~~~LwdL~~~k~lysl~a-----~~~v~sl~fspnrywL~~at~~sIkIwdl~~ 263 (315)
T KOG0279|consen 213 ---DGEAMLWDLNEGKNLYSLEA-----FDIVNSLCFSPNRYWLCAATATSIKIWDLES 263 (315)
T ss_pred ---CceEEEEEccCCceeEeccC-----CCeEeeEEecCCceeEeeccCCceEEEeccc
Confidence 24456666 45777776643 3468889999999999998888888887753
No 87
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.83 E-value=0.0035 Score=61.44 Aligned_cols=170 Identities=12% Similarity=0.110 Sum_probs=100.1
Q ss_pred ecCCC-EEEEe-cCCeEEEEEcCC-ceEEeeeecCccccCeEECCCCc-EEEEECC----CcEEEEe-cCC-cEEEeecc
Q 017317 85 DRNGV-LYTAT-RDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENE-ILVCDAD----KGLLKVT-EEG-VTVLASHV 154 (373)
Q Consensus 85 d~~G~-l~v~~-~~g~I~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~----~gl~~~~-~~g-~~~l~~~~ 154 (373)
.++|+ ++..+ ..+.+..+|.+. ++.......++|. .+.++++|. +|++.+. ..+..++ .+. ...... .
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd-~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn-i 278 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLD-NVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN-I 278 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcc-cceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc-h
Confidence 34665 33322 456677777432 3322233467888 999999885 6676421 1233333 111 111111 0
Q ss_pred CCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCC-----CeEEEeecCCCCcceEEEccC
Q 017317 155 NGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-----NETSILLDSLFFANGVALSKD 228 (373)
Q Consensus 155 ~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-----~~~~~~~~~~~~~~gi~~~~d 228 (373)
. .. -+..++|. .|+. .+.|-.+|..+ .++.....-...|.|+.++||
T Consensus 279 ~-----~i--ea~vkdGK~~~V~--------------------gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPD 331 (635)
T PRK02888 279 A-----RI--EEAVKAGKFKTIG--------------------GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPD 331 (635)
T ss_pred H-----HH--HHhhhCCCEEEEC--------------------CCEEEEEECCccccCCcceEEEEECCCCccceEECCC
Confidence 0 00 02223553 4442 14788899876 345555666788999999999
Q ss_pred CCEEEEEeCCCCeEEEEEecCCC------Cccee-EEec-CCCCCCCceeECCCCCEEEEEec
Q 017317 229 EDYLVVCETFKFRCLKYWLKGES------KEQTE-IFVE-NLPGGPDNIKLAPDGSFWIAILQ 283 (373)
Q Consensus 229 g~~l~v~~~~~~~i~~~~~~~~~------~~~~~-~~~~-~~~g~p~~i~~d~dG~lwva~~~ 283 (373)
|+++|+++...+.+..+|+...+ +.... +..+ .+.-.|-..++|.+|+.|++..-
T Consensus 332 GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~ 394 (635)
T PRK02888 332 GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFL 394 (635)
T ss_pred CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEee
Confidence 99999999999999999975321 11111 1221 12335888999999999998764
No 88
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.80 E-value=0.018 Score=49.42 Aligned_cols=177 Identities=10% Similarity=0.108 Sum_probs=101.0
Q ss_pred EEEecCCCEEEEecCCeEEEEE-cCCc---eEEeeeecCccccCeEECCCCcEEEEECCCcEEEE-e-cCC-cEEEeecc
Q 017317 82 VCVDRNGVLYTATRDGWIKRLH-KNGT---WENWKLIGGDTLLGITTTQENEILVCDADKGLLKV-T-EEG-VTVLASHV 154 (373)
Q Consensus 82 ia~d~~G~l~v~~~~g~I~~~~-~~g~---~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~-~-~~g-~~~l~~~~ 154 (373)
+.+.+++...++..+..|..+| ..++ +..+.....+.. .+.|..+|+-.......|..++ | +.- .+......
T Consensus 46 LeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVt-aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~ 124 (311)
T KOG0315|consen 46 LEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVT-AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN 124 (311)
T ss_pred EEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceE-EEEEeecCeEEEecCCCceEEEEeccCcccchhccCC
Confidence 6677777776555555666666 2222 333433335556 7777778875444444555554 3 332 22221111
Q ss_pred CCccccccceeEEcCC-CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE--eecCCCCcceEEEccCCCE
Q 017317 155 NGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI--LLDSLFFANGVALSKDEDY 231 (373)
Q Consensus 155 ~~~~~~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~--~~~~~~~~~gi~~~~dg~~ 231 (373)
..+|.+...|+ +.|+++|.+ |.|+.+|........ +-+....-..+++.+||+
T Consensus 125 -----spVn~vvlhpnQteLis~dqs------------------g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs- 180 (311)
T KOG0315|consen 125 -----SPVNTVVLHPNQTELISGDQS------------------GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS- 180 (311)
T ss_pred -----CCcceEEecCCcceEEeecCC------------------CcEEEEEccCCccccccCCCCCcceeeEEEcCCCc-
Confidence 24688888886 578888754 788888876554322 223334456899999999
Q ss_pred EEEEeCCCCeEEEEEecCCC-CcceeEEe--cCCCCCCCceeECCCCCEEEEEec
Q 017317 232 LVVCETFKFRCLKYWLKGES-KEQTEIFV--ENLPGGPDNIKLAPDGSFWIAILQ 283 (373)
Q Consensus 232 l~v~~~~~~~i~~~~~~~~~-~~~~~~~~--~~~~g~p~~i~~d~dG~lwva~~~ 283 (373)
++++-.+.++.+++++-+.. ...++... +.-.++.-...+++|+.+.+++..
T Consensus 181 ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 181 MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS 235 (311)
T ss_pred EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence 55555567788888875432 12221111 011233444567888887777654
No 89
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.79 E-value=0.043 Score=53.76 Aligned_cols=255 Identities=11% Similarity=0.044 Sum_probs=125.1
Q ss_pred CCCEEEEecCCeEEEEE-cCCceEEeeeecCc------cccCeEECCCCcEEEEEC---------CCcEEEEe-cCC-cE
Q 017317 87 NGVLYTATRDGWIKRLH-KNGTWENWKLIGGD------TLLGITTTQENEILVCDA---------DKGLLKVT-EEG-VT 148 (373)
Q Consensus 87 ~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~------p~~gl~~d~~g~L~va~~---------~~gl~~~~-~~g-~~ 148 (373)
++.+|+++.+|.|+.+| .+|+..-....... ...+..+. ++.+|++.. ...++.+| .+| ..
T Consensus 110 ~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 110 PRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 38999999999999999 56765432222111 11133443 467777642 23578888 677 43
Q ss_pred EEeeccCCc----cc-------------cccceeEEcC-CCcEEEEeCCcc---ccccccccccccccCCceEEEEeCCC
Q 017317 149 VLASHVNGS----RI-------------NLADDLIAAT-DGSIYFSVASTK---FGLHNWGLDLLEAKPHGKLLKYDPSL 207 (373)
Q Consensus 149 ~l~~~~~~~----~~-------------~~~~~l~~~~-dG~l~v~~~~~~---~~~~~~~~~~~~~~~~g~l~~~d~~~ 207 (373)
.-....... +. ..-...++|+ +|.+||...... ++.+. ........+.|+.+|.++
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~---~~~~~~~~~~l~Ald~~t 265 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRR---TPGDNLYTDSIVALDADT 265 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCcc---CCCCCCceeeEEEEcCCC
Confidence 322211100 00 0011346664 568999864310 00000 000112345899999998
Q ss_pred CeEEEeecCC-------CCcceEEEc----cCCC---EEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECC
Q 017317 208 NETSILLDSL-------FFANGVALS----KDED---YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP 273 (373)
Q Consensus 208 ~~~~~~~~~~-------~~~~gi~~~----~dg~---~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~ 273 (373)
++........ ..+....+. -+|+ .+|+. +.++.++.++....+........ -.+++.++
T Consensus 266 G~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g-~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~ 338 (488)
T cd00216 266 GKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHA-PKNGFFYVLDRTTGKLISARPEV------EQPMAYDP 338 (488)
T ss_pred CCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEE-CCCceEEEEECCCCcEeeEeEee------ccccccCC
Confidence 8866432211 111111111 2333 34444 45677999987543322211111 12244444
Q ss_pred CCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCc------eeccee
Q 017317 274 DGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGK------VMSFVT 346 (373)
Q Consensus 274 dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~------~~~~~~ 346 (373)
+.+|+..........+ .. ...-.....|.+..+| .+|+.+-........ ......
T Consensus 339 -~~vyv~~~~~~~~~~~----~~-------------~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~ 400 (488)
T cd00216 339 -GLVYLGAFHIPLGLPP----QK-------------KKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGG 400 (488)
T ss_pred -ceEEEccccccccCcc----cc-------------cCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCc
Confidence 7788875321100000 00 0000123457789999 578887766543111 001123
Q ss_pred EEEEeCCEEEEeeCCCCeEEEeeCC
Q 017317 347 SALEFDDHLYLGSLNTNFIGKLPLK 371 (373)
Q Consensus 347 ~~~~~~g~L~vgs~~~~~i~~~~l~ 371 (373)
.+...++.||+|+..+ .|.-++..
T Consensus 401 ~~~~~g~~v~~g~~dG-~l~ald~~ 424 (488)
T cd00216 401 SLATAGNLVFAGAADG-YFRAFDAT 424 (488)
T ss_pred ceEecCCeEEEECCCC-eEEEEECC
Confidence 4445678999998544 57766654
No 90
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.79 E-value=0.012 Score=51.53 Aligned_cols=172 Identities=16% Similarity=0.190 Sum_probs=107.1
Q ss_pred ceEEEecCCCEEEEecCCeEEEEE-cCCc-eEEeeeecCccccCeEECC-CCcEEEEEC-CCcEEEEe-cCC--cEEEee
Q 017317 80 EDVCVDRNGVLYTATRDGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQ-ENEILVCDA-DKGLLKVT-EEG--VTVLAS 152 (373)
Q Consensus 80 ~~ia~d~~G~l~v~~~~g~I~~~~-~~g~-~~~~~~~~~~p~~gl~~d~-~g~L~va~~-~~gl~~~~-~~g--~~~l~~ 152 (373)
.+.-+-.|+.|.+++.+.....+| ..|+ ...|....+... +|.+.| +++.||... ......+| +++ .+.+..
T Consensus 149 ScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~-slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~g 227 (343)
T KOG0286|consen 149 SCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM-SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEG 227 (343)
T ss_pred EEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEE-EEecCCCCCCeEEecccccceeeeeccCcceeEeecc
Confidence 334444489999999998888888 5665 445555566778 888888 889998632 23345566 666 454432
Q ss_pred ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCC-eEEEeec--CCCCcceEEEccCC
Q 017317 153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSILLD--SLFFANGVALSKDE 229 (373)
Q Consensus 153 ~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~~~~~--~~~~~~gi~~~~dg 229 (373)
+. .-+|.+.+-|+|.-+.+.+. .+..-.||.... +...+.. .....++++|+..|
T Consensus 228 he-----sDINsv~ffP~G~afatGSD-----------------D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG 285 (343)
T KOG0286|consen 228 HE-----SDINSVRFFPSGDAFATGSD-----------------DATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG 285 (343)
T ss_pred cc-----cccceEEEccCCCeeeecCC-----------------CceeEEEeecCCcEEeeeccCcccCCceeEEEcccc
Confidence 21 24789999999988887553 344444554432 3333322 23345789999999
Q ss_pred CEEEEEeCCCCeEEEEEe-cCCCCcceeEEecCCCCCCCceeECCCCCEEE
Q 017317 230 DYLVVCETFKFRCLKYWL-KGESKEQTEIFVENLPGGPDNIKLAPDGSFWI 279 (373)
Q Consensus 230 ~~l~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwv 279 (373)
+ |+++.-.+..+.++|. +++..+ .+. .-......+.+.+||.-..
T Consensus 286 R-lLfagy~d~~c~vWDtlk~e~vg---~L~-GHeNRvScl~~s~DG~av~ 331 (343)
T KOG0286|consen 286 R-LLFAGYDDFTCNVWDTLKGERVG---VLA-GHENRVSCLGVSPDGMAVA 331 (343)
T ss_pred c-EEEeeecCCceeEeeccccceEE---Eee-ccCCeeEEEEECCCCcEEE
Confidence 9 5555556677888873 333222 121 2223566677888885433
No 91
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.78 E-value=0.02 Score=55.09 Aligned_cols=153 Identities=12% Similarity=0.088 Sum_probs=83.9
Q ss_pred eEEEEEcCCc-eEEeeeecCccccCeEECCCCc-EEEEECC---CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCC
Q 017317 98 WIKRLHKNGT-WENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD 170 (373)
Q Consensus 98 ~I~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~-L~va~~~---~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~d 170 (373)
.|+..|.+|. ...+........ ...+.+||+ |..+... ..|+.++ .+| .+.+.. ..+ ....+++.||
T Consensus 185 ~i~i~d~dg~~~~~lt~~~~~v~-~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-~~g----~~~~~~wSPD 258 (429)
T PRK01742 185 EVRVADYDGFNQFIVNRSSQPLM-SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-FRG----HNGAPAFSPD 258 (429)
T ss_pred EEEEECCCCCCceEeccCCCccc-cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-CCC----ccCceeECCC
Confidence 4555554443 222222222345 788999996 3333222 2377888 666 555432 222 1235789999
Q ss_pred Cc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEe
Q 017317 171 GS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF--KFRCLKYWL 247 (373)
Q Consensus 171 G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~ 247 (373)
|+ |+++... ...-.||.+|.++++.+.+..........+|+|||+.++++... ...|+.++.
T Consensus 259 G~~La~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 259 GSRLAFASSK---------------DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred CCEEEEEEec---------------CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 96 5554321 12236899998877766554433345678999999988876543 335666654
Q ss_pred cCCCCcceeEEecCCCCCCCceeECCCCCEE
Q 017317 248 KGESKEQTEIFVENLPGGPDNIKLAPDGSFW 278 (373)
Q Consensus 248 ~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lw 278 (373)
.+... ... .. .+ .+..+.+||+..
T Consensus 324 ~~~~~---~~l-~~-~~--~~~~~SpDG~~i 347 (429)
T PRK01742 324 SGGGA---SLV-GG-RG--YSAQISADGKTL 347 (429)
T ss_pred CCCCe---EEe-cC-CC--CCccCCCCCCEE
Confidence 44321 121 11 11 235567788643
No 92
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.76 E-value=0.0075 Score=56.57 Aligned_cols=149 Identities=13% Similarity=0.133 Sum_probs=93.9
Q ss_pred cCCcceEEEecCCCEEEEecCCeEEEEEcCCceEEeeee-cCccccCeEECCCCcEEEEECCCcEEE-EecCCcEEEeec
Q 017317 76 LNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLI-GGDTLLGITTTQENEILVCDADKGLLK-VTEEGVTVLASH 153 (373)
Q Consensus 76 ~~~P~~ia~d~~G~l~v~~~~g~I~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L~va~~~~gl~~-~~~~g~~~l~~~ 153 (373)
+..++.|+... +.||+|+..+.|+.=+-.+.++..... ..... |++..++.++|+.....+.++ +++...+ ....
T Consensus 329 ~G~iRtv~e~~-~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delw-gla~hps~~q~~T~gqdk~v~lW~~~k~~-wt~~ 405 (626)
T KOG2106|consen 329 FGPIRTVAEGK-GDILVGTTRNFILQGTLENGFTLTVQGHGDELW-GLATHPSKNQLLTCGQDKHVRLWNDHKLE-WTKI 405 (626)
T ss_pred cCCeeEEecCC-CcEEEeeccceEEEeeecCCceEEEEeccccee-eEEcCCChhheeeccCcceEEEccCCcee-EEEE
Confidence 45567777764 449999988888776633333332222 23456 999999888888755444444 3322211 1111
Q ss_pred cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEE
Q 017317 154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLV 233 (373)
Q Consensus 154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~ 233 (373)
.. .....+.++|.|.+-++.. .|+.+.+|.++.....+......-+-+.++|||.++-
T Consensus 406 ~~----d~~~~~~fhpsg~va~Gt~------------------~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lA 463 (626)
T KOG2106|consen 406 IE----DPAECADFHPSGVVAVGTA------------------TGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLA 463 (626)
T ss_pred ec----CceeEeeccCcceEEEeec------------------cceEEEEecccceeEEEEecCCceEEEEEcCCCCEEE
Confidence 11 1245778999996666653 4889999988765544444444457899999999666
Q ss_pred EEeCCCCeEEEEEecCC
Q 017317 234 VCETFKFRCLKYWLKGE 250 (373)
Q Consensus 234 v~~~~~~~i~~~~~~~~ 250 (373)
|.. -++.|+.|.++..
T Consensus 464 vgs-~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 464 VGS-HDNHIYIYRVSAN 479 (626)
T ss_pred Eec-CCCeEEEEEECCC
Confidence 664 5677888877643
No 93
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.76 E-value=0.019 Score=55.75 Aligned_cols=151 Identities=18% Similarity=0.222 Sum_probs=98.8
Q ss_pred CCcCCcceEEEecCCCEE-EEecCCeEEEEEc-CC-c-eEEeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe-cCC-
Q 017317 74 GILNGPEDVCVDRNGVLY-TATRDGWIKRLHK-NG-T-WENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG- 146 (373)
Q Consensus 74 g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~~-~g-~-~~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~g- 146 (373)
+.-..-.++++.++|... .++.+..|..++. +. . .+++........ +++|.++|++++. ..+..+..++ ++|
T Consensus 201 ~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~-~~~f~p~g~~i~Sgs~D~tvriWd~~~~~ 279 (456)
T KOG0266|consen 201 GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVT-SVAFSPDGNLLVSGSDDGTVRIWDVRTGE 279 (456)
T ss_pred ccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceE-EEEecCCCCEEEEecCCCcEEEEeccCCe
Confidence 444556678888999755 4557788888873 33 3 334433344556 9999999987765 4444566667 666
Q ss_pred -cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE--EeecCCCCc---
Q 017317 147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS--ILLDSLFFA--- 220 (373)
Q Consensus 147 -~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~--~~~~~~~~~--- 220 (373)
.+.+..+. ..+.++++.++|++.++.+. .+.|..+|..+++.. ........+
T Consensus 280 ~~~~l~~hs-----~~is~~~f~~d~~~l~s~s~-----------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 337 (456)
T KOG0266|consen 280 CVRKLKGHS-----DGISGLAFSPDGNLLVSASY-----------------DGTIRVWDLETGSKLCLKLLSGAENSAPV 337 (456)
T ss_pred EEEeeeccC-----CceEEEEECCCCCEEEEcCC-----------------CccEEEEECCCCceeeeecccCCCCCCce
Confidence 44443322 25778999999987777542 578899999888732 233333334
Q ss_pred ceEEEccCCCEEEEEeCCCCeEEEEEec
Q 017317 221 NGVALSKDEDYLVVCETFKFRCLKYWLK 248 (373)
Q Consensus 221 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 248 (373)
.-+.++|++++++.... ++.+..+++.
T Consensus 338 ~~~~fsp~~~~ll~~~~-d~~~~~w~l~ 364 (456)
T KOG0266|consen 338 TSVQFSPNGKYLLSASL-DRTLKLWDLR 364 (456)
T ss_pred eEEEECCCCcEEEEecC-CCeEEEEEcc
Confidence 67899999997777643 4456666655
No 94
>PRK13684 Ycf48-like protein; Provisional
Probab=97.74 E-value=0.023 Score=52.73 Aligned_cols=224 Identities=9% Similarity=0.061 Sum_probs=113.5
Q ss_pred eEEEecCCCEEEEecCCeEEEEEcCC-ceEEeee---ecCccccCeEECCCCcEEEEECCCcEEEEecCC--cEEEeecc
Q 017317 81 DVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKL---IGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLASHV 154 (373)
Q Consensus 81 ~ia~d~~G~l~v~~~~g~I~~~~~~g-~~~~~~~---~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g--~~~l~~~~ 154 (373)
+++++ ++..|+....|.|++-...| .++.+.. ..+.+. .+....++.+|++.....+++-++.| .+.+....
T Consensus 94 ~v~~~-~~~~~~~G~~g~i~~S~DgG~tW~~~~~~~~~~~~~~-~i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~ 171 (334)
T PRK13684 94 SISFK-GDEGWIVGQPSLLLHTTDGGKNWTRIPLSEKLPGSPY-LITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDA 171 (334)
T ss_pred eeEEc-CCcEEEeCCCceEEEECCCCCCCeEccCCcCCCCCce-EEEEECCCcceeeeccceEEEECCCCCCceeCcCCC
Confidence 34454 34567655666676654323 3444321 223455 55444455677766544566655444 44443222
Q ss_pred CCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEE-eCCCCeEEEeecC-CCCcceEEEccCCCEE
Q 017317 155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY-DPSLNETSILLDS-LFFANGVALSKDEDYL 232 (373)
Q Consensus 155 ~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~-d~~~~~~~~~~~~-~~~~~gi~~~~dg~~l 232 (373)
....+++.+.++|.+++... .|.+++- +..+...+.+... ....+++++.++++ +
T Consensus 172 ----~g~~~~i~~~~~g~~v~~g~------------------~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~ 228 (334)
T PRK13684 172 ----AGVVRNLRRSPDGKYVAVSS------------------RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-L 228 (334)
T ss_pred ----cceEEEEEECCCCeEEEEeC------------------CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-E
Confidence 22457888888886665543 2667665 2222234443222 23457788888887 5
Q ss_pred EEEeCCCCeEEEEE-ecCCCCcceeEEecC-C-C-CCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchh
Q 017317 233 VVCETFKFRCLKYW-LKGESKEQTEIFVEN-L-P-GGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKL 308 (373)
Q Consensus 233 ~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~-~-~-g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 308 (373)
|++.. .+..++. .++.. ........ . . ...-.+++.+++++|++...+
T Consensus 229 ~~vg~--~G~~~~~s~d~G~--sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G------------------------ 280 (334)
T PRK13684 229 WMLAR--GGQIRFNDPDDLE--SWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG------------------------ 280 (334)
T ss_pred EEEec--CCEEEEccCCCCC--ccccccCCccccccceeeEEEcCCCCEEEEcCCC------------------------
Confidence 55543 2344442 22211 11111100 0 0 112345667788999987654
Q ss_pred hhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEE-EeCCEEEEeeCCCCeEEEeeC
Q 017317 309 IKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSAL-EFDDHLYLGSLNTNFIGKLPL 370 (373)
Q Consensus 309 ~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~-~~~g~L~vgs~~~~~i~~~~l 370 (373)
.++.-...|+..+....+.+... ....+. ..++++|+.+..+- |.+++-
T Consensus 281 -----------~v~~S~d~G~tW~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~~G~-il~~~~ 330 (334)
T PRK13684 281 -----------TLLVSKDGGKTWEKDPVGEEVPS-NFYKIVFLDPEKGFVLGQRGV-LLRYVG 330 (334)
T ss_pred -----------eEEEeCCCCCCCeECCcCCCCCc-ceEEEEEeCCCceEEECCCce-EEEecC
Confidence 24443445676665433233322 334444 44678888887664 655543
No 95
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.74 E-value=0.02 Score=50.81 Aligned_cols=68 Identities=10% Similarity=0.012 Sum_probs=45.2
Q ss_pred cceEEEecCCCEE-EEecCCeEEEEEc-CCceEEeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe-cCC
Q 017317 79 PEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG 146 (373)
Q Consensus 79 P~~ia~d~~G~l~-v~~~~g~I~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~g 146 (373)
.+++-+.+-|.+. +|..+|+|+.+|- +-.........-+|.+++++.++|++.+. .....+..+| .+|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC
Confidence 6788888888877 8999999999983 22222222223456669999999986665 4444556666 444
No 96
>PRK13684 Ycf48-like protein; Provisional
Probab=97.74 E-value=0.038 Score=51.28 Aligned_cols=178 Identities=16% Similarity=0.196 Sum_probs=88.0
Q ss_pred cceEEEecCCCEEEEecCCeEEEEEcCC-ceEEeeee----cCccccCeEECCCCcEEEEECCCcEEEEecCC--cEEEe
Q 017317 79 PEDVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKLI----GGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLA 151 (373)
Q Consensus 79 P~~ia~d~~G~l~v~~~~g~I~~~~~~g-~~~~~~~~----~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g--~~~l~ 151 (373)
..+|++..+.+.|+....|.|++-...| .++..... ..... .++++. ++.|++.....+++-.+.| .+.+.
T Consensus 48 l~~v~F~d~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~-~v~~~~-~~~~~~G~~g~i~~S~DgG~tW~~~~ 125 (334)
T PRK13684 48 LLDIAFTDPNHGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLI-SISFKG-DEGWIVGQPSLLLHTTDGGKNWTRIP 125 (334)
T ss_pred eEEEEEeCCCcEEEEECCCEEEEEcCCCCCceECccCCccccccee-eeEEcC-CcEEEeCCCceEEEECCCCCCCeEcc
Confidence 4556776566767444567777654333 34433211 11234 677763 4577765444455543434 44432
Q ss_pred ec--cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-CCcceEEEccC
Q 017317 152 SH--VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVALSKD 228 (373)
Q Consensus 152 ~~--~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~~~gi~~~~d 228 (373)
.. .++ .+..+....++.+|+... .|.|++-+..++..+.+.... ...+++.++++
T Consensus 126 ~~~~~~~----~~~~i~~~~~~~~~~~g~------------------~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~ 183 (334)
T PRK13684 126 LSEKLPG----SPYLITALGPGTAEMATN------------------VGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPD 183 (334)
T ss_pred CCcCCCC----CceEEEEECCCcceeeec------------------cceEEEECCCCCCceeCcCCCcceEEEEEECCC
Confidence 11 111 223333333455666543 367777765544555543322 23456788888
Q ss_pred CCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317 229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL 284 (373)
Q Consensus 229 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~ 284 (373)
+.. ++.. .+..+++-.-++. ...............++.+.++|++|+....+
T Consensus 184 g~~-v~~g-~~G~i~~s~~~gg--~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G 235 (334)
T PRK13684 184 GKY-VAVS-SRGNFYSTWEPGQ--TAWTPHQRNSSRRLQSMGFQPDGNLWMLARGG 235 (334)
T ss_pred CeE-EEEe-CCceEEEEcCCCC--CeEEEeeCCCcccceeeeEcCCCCEEEEecCC
Confidence 753 3332 3345555321221 11222211222345567778889999886554
No 97
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.72 E-value=0.031 Score=51.62 Aligned_cols=187 Identities=13% Similarity=0.129 Sum_probs=105.0
Q ss_pred CeEECCCCcEEEEECCCcEEEEe--cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccC
Q 017317 121 GITTTQENEILVCDADKGLLKVT--EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP 196 (373)
Q Consensus 121 gl~~d~~g~L~va~~~~gl~~~~--~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~ 196 (373)
++...+.|+.++.....+-+.|. .+| ...+... + ..-.....++.|||.|+.+.. .
T Consensus 308 ~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~--~-s~v~~ts~~fHpDgLifgtgt-----------------~ 367 (506)
T KOG0289|consen 308 GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE--T-SDVEYTSAAFHPDGLIFGTGT-----------------P 367 (506)
T ss_pred eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec--c-ccceeEEeeEcCCceEEeccC-----------------C
Confidence 88888999866654455666555 667 3333322 1 112345789999999987743 3
Q ss_pred CceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCC
Q 017317 197 HGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG 275 (373)
Q Consensus 197 ~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG 275 (373)
+|.|-.+|.+......-+.+...| ..|+|+..|-+ +++...+..|..+|+.- ...+..+.-...--...+.+|..|
T Consensus 368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~-Lat~add~~V~lwDLRK--l~n~kt~~l~~~~~v~s~~fD~SG 444 (506)
T KOG0289|consen 368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYW-LATAADDGSVKLWDLRK--LKNFKTIQLDEKKEVNSLSFDQSG 444 (506)
T ss_pred CceEEEEEcCCccccccCCCCCCceeEEEeccCceE-EEEEecCCeEEEEEehh--hcccceeeccccccceeEEEcCCC
Confidence 466666776543311112222222 46889988854 44444555688888742 223333331111124568899999
Q ss_pred CEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEE---EEEeCCCCceecceeEEEEeC
Q 017317 276 SFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVI---RKFEDPNGKVMSFVTSALEFD 352 (373)
Q Consensus 276 ~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~---~~~~~~~g~~~~~~~~~~~~~ 352 (373)
.+.+..... -.|+.+....+.. ..+++..| ..+.+.+.+
T Consensus 445 t~L~~~g~~----------------------------------l~Vy~~~k~~k~W~~~~~~~~~sg----~st~v~Fg~ 486 (506)
T KOG0289|consen 445 TYLGIAGSD----------------------------------LQVYICKKKTKSWTEIKELADHSG----LSTGVRFGE 486 (506)
T ss_pred CeEEeecce----------------------------------eEEEEEecccccceeeehhhhccc----ccceeeecc
Confidence 876665221 1356666444332 33344333 356777766
Q ss_pred CEEEEeeCCCCeEEEe
Q 017317 353 DHLYLGSLNTNFIGKL 368 (373)
Q Consensus 353 g~L~vgs~~~~~i~~~ 368 (373)
..-|+++-..+.+.++
T Consensus 487 ~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 487 HAQYLASTSMDAILRL 502 (506)
T ss_pred cceEEeeccchhheEE
Confidence 6677777666666543
No 98
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.71 E-value=0.02 Score=56.12 Aligned_cols=114 Identities=14% Similarity=0.096 Sum_probs=63.6
Q ss_pred CCCEEEEecCCeEEEEE-cCCceEEeeeecC---------ccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeecc
Q 017317 87 NGVLYTATRDGWIKRLH-KNGTWENWKLIGG---------DTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHV 154 (373)
Q Consensus 87 ~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~---------~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~ 154 (373)
+|++|+++.++.++.+| .+|+..-...... ... ++++..++.+|+++....++.+| ++| ...-.. .
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~-g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~-~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNR-GVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFG-N 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccC-CcEEccCCeEEEecCCCeEEEEECCCCCEeeeec-C
Confidence 78999999999999999 5675321111110 012 33443337999998777789999 778 333222 1
Q ss_pred CCc---cccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE
Q 017317 155 NGS---RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI 212 (373)
Q Consensus 155 ~~~---~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~ 212 (373)
... .........+. ++.+|++.....+. .....|.|+.+|.++++...
T Consensus 139 ~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~---------~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 139 NDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFF---------ACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CCCcCcceEecCCCEEE-CCEEEEeccccccc---------cCCCCcEEEEEECCCCceee
Confidence 111 00011122333 37788775431110 01124789999998887543
No 99
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.71 E-value=0.0028 Score=62.03 Aligned_cols=124 Identities=16% Similarity=0.295 Sum_probs=72.8
Q ss_pred ccccccceeEEcCC-CcEEEEeCCcccc-cc-ccccccccccCCceEEEEeCCCC-------eEEEee------------
Q 017317 157 SRINLADDLIAATD-GSIYFSVASTKFG-LH-NWGLDLLEAKPHGKLLKYDPSLN-------ETSILL------------ 214 (373)
Q Consensus 157 ~~~~~~~~l~~~~d-G~l~v~~~~~~~~-~~-~~~~~~~~~~~~g~l~~~d~~~~-------~~~~~~------------ 214 (373)
.++..+.++.+++. |.+||+.++..-. .. ............|.||+++++.. ..+.+.
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 46778999999985 7999997653311 00 01112223456789999998765 333321
Q ss_pred ------cCCCCcceEEEccCCCEEEEEeCCCCeE------------EEE--------EecCCCCcceeEEecC-CCCCCC
Q 017317 215 ------DSLFFANGVALSKDEDYLVVCETFKFRC------------LKY--------WLKGESKEQTEIFVEN-LPGGPD 267 (373)
Q Consensus 215 ------~~~~~~~gi~~~~dg~~l~v~~~~~~~i------------~~~--------~~~~~~~~~~~~~~~~-~~g~p~ 267 (373)
..+..|..|+|+++|+ ||+++-....- +.+ +..+...+....|... ...-..
T Consensus 427 ~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~t 505 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEIT 505 (524)
T ss_pred cCcccCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccc
Confidence 1256789999999998 88887654321 111 1122233333444321 223456
Q ss_pred ceeECCCCC-EEEEE
Q 017317 268 NIKLAPDGS-FWIAI 281 (373)
Q Consensus 268 ~i~~d~dG~-lwva~ 281 (373)
|+++++||+ |||..
T Consensus 506 G~~fspDg~tlFvni 520 (524)
T PF05787_consen 506 GPCFSPDGRTLFVNI 520 (524)
T ss_pred cceECCCCCEEEEEE
Confidence 788999996 66653
No 100
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.70 E-value=0.027 Score=50.00 Aligned_cols=176 Identities=15% Similarity=0.104 Sum_probs=98.8
Q ss_pred cceEEEecCCCEE-EEecCCeEEEEEcCC--ceEEeeeecCccccCeEECCCC---cEEEEECCCcEEEEecCC-cEEEe
Q 017317 79 PEDVCVDRNGVLY-TATRDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQEN---EILVCDADKGLLKVTEEG-VTVLA 151 (373)
Q Consensus 79 P~~ia~d~~G~l~-v~~~~g~I~~~~~~g--~~~~~~~~~~~p~~gl~~d~~g---~L~va~~~~gl~~~~~~g-~~~l~ 151 (373)
-.++|++ |... .|+.+-.|..||... +.-.+....+... .+.|++.- .|.-|..++.+..++ .| .+.+.
T Consensus 46 itavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~Hagsit-aL~F~~~~S~shLlS~sdDG~i~iw~-~~~W~~~~ 121 (362)
T KOG0294|consen 46 ITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSIT-ALKFYPPLSKSHLLSGSDDGHIIIWR-VGSWELLK 121 (362)
T ss_pred eeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceE-EEEecCCcchhheeeecCCCcEEEEE-cCCeEEee
Confidence 3556775 3322 455788999998322 2222223345555 66666433 566665444455454 34 44332
Q ss_pred eccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCE
Q 017317 152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDY 231 (373)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~ 231 (373)
. ..+.. ..+++|++.|.|.|-++.++ .+.+-.+|.-.|+.-.+..--..+.-+.|++.|++
T Consensus 122 s-lK~H~-~~Vt~lsiHPS~KLALsVg~-----------------D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~ 182 (362)
T KOG0294|consen 122 S-LKAHK-GQVTDLSIHPSGKLALSVGG-----------------DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDH 182 (362)
T ss_pred e-ecccc-cccceeEecCCCceEEEEcC-----------------CceeeeehhhcCccceeeccCCcceeeEEcCCCCE
Confidence 2 22222 23899999999999888754 23444455555554433333345666999999998
Q ss_pred EEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEec
Q 017317 232 LVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ 283 (373)
Q Consensus 232 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~ 283 (373)
.++.. +++|..|.++..+.-. .. ..+..+-++.++..+.+.+|...
T Consensus 183 F~v~~--~~~i~i~q~d~A~v~~---~i-~~~~r~l~~~~l~~~~L~vG~d~ 228 (362)
T KOG0294|consen 183 FVVSG--RNKIDIYQLDNASVFR---EI-ENPKRILCATFLDGSELLVGGDN 228 (362)
T ss_pred EEEEe--ccEEEEEecccHhHhh---hh-hccccceeeeecCCceEEEecCC
Confidence 87774 5677777654432211 11 12234556666777777777544
No 101
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.68 E-value=0.057 Score=51.93 Aligned_cols=174 Identities=15% Similarity=0.099 Sum_probs=94.2
Q ss_pred EEecCCC----EEEEecC--CeEEEEEc-CCceEEeeeecCccccCeEECCCCc-EEE-EECC--CcEEE--Ee-cC---
Q 017317 83 CVDRNGV----LYTATRD--GWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILV-CDAD--KGLLK--VT-EE--- 145 (373)
Q Consensus 83 a~d~~G~----l~v~~~~--g~I~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~-L~v-a~~~--~gl~~--~~-~~--- 145 (373)
.+.|||+ +|+...+ ..|+..+. .|+.+.+....+... ..++.+||+ |.+ .+.. ..++. ++ ..
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~-~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQL-MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCcc-ceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 6667764 2354433 46888884 455555554455556 778999995 433 3221 13443 33 22
Q ss_pred C-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCC--CCeEEEeecCCCCcc
Q 017317 146 G-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LNETSILLDSLFFAN 221 (373)
Q Consensus 146 g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--~~~~~~~~~~~~~~~ 221 (373)
+ .+.+..... .......+.|||+ |+++... .....||+++.+ ++..+.+........
T Consensus 270 g~~~~lt~~~~----~~~~~p~wSPDG~~Laf~s~~---------------~g~~~ly~~~~~~~g~~~~~lt~~~~~~~ 330 (428)
T PRK01029 270 GKPRRLLNEAF----GTQGNPSFSPDGTRLVFVSNK---------------DGRPRIYIMQIDPEGQSPRLLTKKYRNSS 330 (428)
T ss_pred CcceEeecCCC----CCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECcccccceEEeccCCCCcc
Confidence 3 333322111 1223568899996 6655321 112368887653 233333332223335
Q ss_pred eEEEccCCCEEEEEeCC--CCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEE
Q 017317 222 GVALSKDEDYLVVCETF--KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIA 280 (373)
Q Consensus 222 gi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva 280 (373)
...|+|||+.++++... ...|+++++.+.+. ..+. .......+....+||+ |++.
T Consensus 331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~---~~Lt-~~~~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 331 CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD---YQLT-TSPENKESPSWAIDSLHLVYS 388 (428)
T ss_pred ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe---EEcc-CCCCCccceEECCCCCEEEEE
Confidence 67899999988877543 35788888765432 2222 1123345577788886 4433
No 102
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=97.68 E-value=0.02 Score=53.94 Aligned_cols=141 Identities=20% Similarity=0.216 Sum_probs=80.6
Q ss_pred EecCCCEEEEecCCeEEEEEcCCceEEeeeec----CccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeeccCCc
Q 017317 84 VDRNGVLYTATRDGWIKRLHKNGTWENWKLIG----GDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGS 157 (373)
Q Consensus 84 ~d~~G~l~v~~~~g~I~~~~~~g~~~~~~~~~----~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~ 157 (373)
++.+|.+|+++.+|.|+.+++++-...+.... .... +-.+..+|++|+++....++.+| .+| ...... ..+.
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~-~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~-~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLS-GPILGSDGKIYVGSWDGKLYALDASTGTLVWSRN-VGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceecc-CceEEeCCeEEEecccceEEEEECCCCcEEEEEe-cCCC
Confidence 55689999999999999999544222232111 1223 33333489999998754588999 478 443322 2221
Q ss_pred cccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-----CCCCcceEEEccCCCEE
Q 017317 158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-----SLFFANGVALSKDEDYL 232 (373)
Q Consensus 158 ~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-----~~~~~~gi~~~~dg~~l 232 (373)
....+-++-.+|.+|+.+. .+.++.+|.++++...... ......... ..++. +
T Consensus 143 --~~~~~~~v~~~~~v~~~s~------------------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~-v 200 (370)
T COG1520 143 --PYYASPPVVGDGTVYVGTD------------------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGT-V 200 (370)
T ss_pred --eEEecCcEEcCcEEEEecC------------------CCeEEEEEccCCcEEEEEecCCccccccccCce-eecce-E
Confidence 1111224445788988842 3789999988776543211 111112222 33443 7
Q ss_pred EEEeCC-CCeEEEEEec
Q 017317 233 VVCETF-KFRCLKYWLK 248 (373)
Q Consensus 233 ~v~~~~-~~~i~~~~~~ 248 (373)
|+.... +..++.++..
T Consensus 201 y~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 201 YVGSDGYDGILYALNAE 217 (370)
T ss_pred EEecCCCcceEEEEEcc
Confidence 777543 3467777764
No 103
>PTZ00421 coronin; Provisional
Probab=97.60 E-value=0.084 Score=51.62 Aligned_cols=148 Identities=18% Similarity=0.141 Sum_probs=87.8
Q ss_pred CcceEEEec-CCC-EEEEecCCeEEEEE-cCCc--------eEEeeeecCccccCeEECCCC-cEEE-EECCCcEEEEe-
Q 017317 78 GPEDVCVDR-NGV-LYTATRDGWIKRLH-KNGT--------WENWKLIGGDTLLGITTTQEN-EILV-CDADKGLLKVT- 143 (373)
Q Consensus 78 ~P~~ia~d~-~G~-l~v~~~~g~I~~~~-~~g~--------~~~~~~~~~~p~~gl~~d~~g-~L~v-a~~~~gl~~~~- 143 (373)
.-.++++.+ ++. |.+++.++.|..|+ .++. ...+........ .+++.+++ ++++ +...+.+..+|
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~-~l~f~P~~~~iLaSgs~DgtVrIWDl 155 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG-IVSFHPSAMNVLASAGADMVVNVWDV 155 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE-EEEeCcCCCCEEEEEeCCCEEEEEEC
Confidence 356788888 665 55778899999888 3331 112222223345 78898875 4444 44444566677
Q ss_pred cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCC--C
Q 017317 144 EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF--F 219 (373)
Q Consensus 144 ~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~--~ 219 (373)
.++ ...+... ...+.++++.++|.+.++.+. .+.|..+|+.+++......... .
T Consensus 156 ~tg~~~~~l~~h-----~~~V~sla~spdG~lLatgs~-----------------Dg~IrIwD~rsg~~v~tl~~H~~~~ 213 (493)
T PTZ00421 156 ERGKAVEVIKCH-----SDQITSLEWNLDGSLLCTTSK-----------------DKKLNIIDPRDGTIVSSVEAHASAK 213 (493)
T ss_pred CCCeEEEEEcCC-----CCceEEEEEECCCCEEEEecC-----------------CCEEEEEECCCCcEEEEEecCCCCc
Confidence 555 2222111 134778999999988776543 4788889988766433222221 2
Q ss_pred cceEEEccCCCEEEEEeC---CCCeEEEEEec
Q 017317 220 ANGVALSKDEDYLVVCET---FKFRCLKYWLK 248 (373)
Q Consensus 220 ~~gi~~~~dg~~l~v~~~---~~~~i~~~~~~ 248 (373)
...+.+.++++.++.+.. .++.|..||+.
T Consensus 214 ~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 214 SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 235677888775554432 24567777764
No 104
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.58 E-value=0.011 Score=50.67 Aligned_cols=140 Identities=12% Similarity=0.063 Sum_probs=88.6
Q ss_pred ecCCCEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEecCCcEEEeeccCCccccccc
Q 017317 85 DRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLAD 163 (373)
Q Consensus 85 d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g~~~l~~~~~~~~~~~~~ 163 (373)
..+..+...+.++.|..+| ..|....-......+. ++-+..+|++.....+.++..++...+..+.... .|- .++
T Consensus 153 ~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt-SlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k--~P~-nV~ 228 (334)
T KOG0278|consen 153 HEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVT-SLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK--MPC-NVE 228 (334)
T ss_pred ccCceEEeeccCCceEEEEeccCcEEEEEecCCCCc-ceeeccCCCEEEEecCceeEEeccccccceeecc--Ccc-ccc
Confidence 3455666667788888888 6776544444445566 9999999998766556677777733222332210 011 233
Q ss_pred eeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-ecCCCCc-ceEEEccCCCEEEEEeCCCCe
Q 017317 164 DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFA-NGVALSKDEDYLVVCETFKFR 241 (373)
Q Consensus 164 ~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~-~gi~~~~dg~~l~v~~~~~~~ 241 (373)
+-...|+-.+||+.. ....+++||-.++.-... ..+...| ..+.|+|||. +|.+.+.++.
T Consensus 229 SASL~P~k~~fVaGg-----------------ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGT 290 (334)
T KOG0278|consen 229 SASLHPKKEFFVAGG-----------------EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGT 290 (334)
T ss_pred cccccCCCceEEecC-----------------cceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCce
Confidence 334567778998854 246899999887754333 2333333 5789999998 9998877665
Q ss_pred EEEEE
Q 017317 242 CLKYW 246 (373)
Q Consensus 242 i~~~~ 246 (373)
|..+.
T Consensus 291 irlWQ 295 (334)
T KOG0278|consen 291 IRLWQ 295 (334)
T ss_pred EEEEE
Confidence 55444
No 105
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.55 E-value=0.027 Score=49.45 Aligned_cols=230 Identities=18% Similarity=0.210 Sum_probs=108.7
Q ss_pred EecCCCEEEEecCCeEEEEEcCCceEEeeeecCccccCeEECCCCc--EEEEECCCc-EEEEecCC-c--EEEeeccCCc
Q 017317 84 VDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENE--ILVCDADKG-LLKVTEEG-V--TVLASHVNGS 157 (373)
Q Consensus 84 ~d~~G~l~v~~~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~--L~va~~~~g-l~~~~~~g-~--~~l~~~~~~~ 157 (373)
.+++|..++.+. +..|+...-...+.+.+ +|++++.-. +.++-..+. .+.+|.++ . ..+.. ..+.
T Consensus 43 ~~~dgs~g~a~~-------~eaGk~v~~~~lpaR~H-gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s-~~~R 113 (366)
T COG3490 43 DARDGSFGAATL-------SEAGKIVFATALPARGH-GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS-QEGR 113 (366)
T ss_pred eccCCceeEEEE-------ccCCceeeeeecccccC-CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec-ccCc
Confidence 345788776542 12333322223455667 888876443 444432222 34455444 2 22221 1221
Q ss_pred cccccceeEEcCCCcE-EEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe---ecCCCCcceEEEccCCCEEE
Q 017317 158 RINLADDLIAATDGSI-YFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL---LDSLFFANGVALSKDEDYLV 233 (373)
Q Consensus 158 ~~~~~~~l~~~~dG~l-~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~---~~~~~~~~gi~~~~dg~~l~ 233 (373)
++--.=.+.+||++ |.+... + ....|-|-.||.. ..+..+ ..-.-.|.-+.+.+||+.+.
T Consensus 114 --HfyGHGvfs~dG~~LYATEnd--f-----------d~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlv 177 (366)
T COG3490 114 --HFYGHGVFSPDGRLLYATEND--F-----------DPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLV 177 (366)
T ss_pred --eeecccccCCCCcEEEeecCC--C-----------CCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEE
Confidence 12222367899974 555322 1 1123445556644 333332 22234578899999999888
Q ss_pred EEeCCCCeEEE--------EEecCCCCcceeEEec----------CCC-----CCCCceeECCCCCEEEEEec--CCCch
Q 017317 234 VCETFKFRCLK--------YWLKGESKEQTEIFVE----------NLP-----GGPDNIKLAPDGSFWIAILQ--LSSPG 288 (373)
Q Consensus 234 v~~~~~~~i~~--------~~~~~~~~~~~~~~~~----------~~~-----g~p~~i~~d~dG~lwva~~~--~~~~~ 288 (373)
+++. +|.. ++++.- ...-++.+ .++ -....+.++.||++|.++.- .++..
T Consensus 178 vanG---GIethpdfgR~~lNldsM--ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ 252 (366)
T COG3490 178 VANG---GIETHPDFGRTELNLDSM--EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDL 252 (366)
T ss_pred EeCC---ceecccccCccccchhhc--CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccC
Confidence 8754 1221 111110 00001110 111 12355789999999999853 33222
Q ss_pred hhhccCChHH---------HHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceec
Q 017317 289 LEFVHTSKAT---------KHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMS 343 (373)
Q Consensus 289 ~~~~~~~p~~---------~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~ 343 (373)
..+++....- .+....+-..+-....+...+.|..-+|.|+....+....|....
T Consensus 253 ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~ 316 (366)
T COG3490 253 PPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVS 316 (366)
T ss_pred CcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEe
Confidence 2222211000 111111111112233355567666667899988888877776443
No 106
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.51 E-value=0.00018 Score=40.04 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=24.8
Q ss_pred CCCcceEEEccCCCEEEEEeCCCCeEEEE
Q 017317 217 LFFANGVALSKDEDYLVVCETFKFRCLKY 245 (373)
Q Consensus 217 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~ 245 (373)
+..|.|++++++|+ +||+|+.+++|.+|
T Consensus 1 f~~P~gvav~~~g~-i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGN-IYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence 35799999998887 99999999999876
No 107
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.50 E-value=0.059 Score=48.80 Aligned_cols=150 Identities=13% Similarity=0.145 Sum_probs=91.1
Q ss_pred cCccccCeEECCCCcEEEEECC--CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccc
Q 017317 115 GGDTLLGITTTQENEILVCDAD--KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLD 190 (373)
Q Consensus 115 ~~~p~~gl~~d~~g~L~va~~~--~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~ 190 (373)
+..|+..|.+.+||..|+.... ..+..++ ..| ...+... ......-+.+.|||...|+..-
T Consensus 194 gh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~----glgg~slLkwSPdgd~lfaAt~----------- 258 (445)
T KOG2139|consen 194 GHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK----GLGGFSLLKWSPDGDVLFAATC----------- 258 (445)
T ss_pred CCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc----CCCceeeEEEcCCCCEEEEecc-----------
Confidence 3445558899999988876332 3577777 566 4444321 1223456789999987776532
Q ss_pred cccccCCceEEEEeCCC--CeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCc--------ceeEEec
Q 017317 191 LLEAKPHGKLLKYDPSL--NETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKE--------QTEIFVE 260 (373)
Q Consensus 191 ~~~~~~~g~l~~~d~~~--~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~--------~~~~~~~ 260 (373)
.+++++=..+ ...+...-+.....+-.++|+|++|+++-.+..++++....++... ......+
T Consensus 259 -------davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaD 331 (445)
T KOG2139|consen 259 -------DAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD 331 (445)
T ss_pred -------cceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeecc
Confidence 2344443221 2222222222255678899999999999999999998876654211 1111110
Q ss_pred -----------CCCCCCCceeECCCCCEEEEEecCCC
Q 017317 261 -----------NLPGGPDNIKLAPDGSFWIAILQLSS 286 (373)
Q Consensus 261 -----------~~~g~p~~i~~d~dG~lwva~~~~~~ 286 (373)
-..|-+..++.|+.|...+.+..+.+
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred chhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 01345667899999998888887644
No 108
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.47 E-value=0.011 Score=55.13 Aligned_cols=66 Identities=24% Similarity=0.344 Sum_probs=43.1
Q ss_pred CcceEEEccCC------CEEEEEeCCCCeEEEEEecCCCCcceeEEec-CCCCCCCceeECCCCCEEEEEecC
Q 017317 219 FANGVALSKDE------DYLVVCETFKFRCLKYWLKGESKEQTEIFVE-NLPGGPDNIKLAPDGSFWIAILQL 284 (373)
Q Consensus 219 ~~~gi~~~~dg------~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~dG~lwva~~~~ 284 (373)
-|.|++|.... +.++|+.-..-.+.+...++......+.+.. ...++|.++++++||.|++++..+
T Consensus 315 ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~~ 387 (399)
T COG2133 315 APSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQG 387 (399)
T ss_pred ccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecCC
Confidence 45677776431 2388887766667776665542222233332 234799999999999999998764
No 109
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.45 E-value=0.081 Score=47.63 Aligned_cols=108 Identities=14% Similarity=0.152 Sum_probs=63.4
Q ss_pred cCccccCeEECCCCcEEE--EECC-CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCcccccccccc
Q 017317 115 GGDTLLGITTTQENEILV--CDAD-KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGL 189 (373)
Q Consensus 115 ~~~p~~gl~~d~~g~L~v--a~~~-~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~ 189 (373)
+.+.+ +++.++.....| |-.. .-.+.+| .+| ........++. ++--.-++++||++.+++.+. +
T Consensus 4 P~RgH-~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEnd-~------- 72 (305)
T PF07433_consen 4 PARGH-GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTEND-Y------- 72 (305)
T ss_pred Ccccc-ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEeccc-c-------
Confidence 45677 899988554333 3222 2256777 666 33222222222 222345889999755554320 1
Q ss_pred ccccccCCceEEEEeCCCC--eEEEeecCCCCcceEEEccCCCEEEEEeC
Q 017317 190 DLLEAKPHGKLLKYDPSLN--ETSILLDSLFFANGVALSKDEDYLVVCET 237 (373)
Q Consensus 190 ~~~~~~~~g~l~~~d~~~~--~~~~~~~~~~~~~gi~~~~dg~~l~v~~~ 237 (373)
....|.|-.||...+ ++..+....-.|.-+.+.+||+.|.|++.
T Consensus 73 ----~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG 118 (305)
T PF07433_consen 73 ----ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANG 118 (305)
T ss_pred ----CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcC
Confidence 234577888887722 22233445556888999999998999865
No 110
>PTZ00421 coronin; Provisional
Probab=97.44 E-value=0.14 Score=50.16 Aligned_cols=113 Identities=9% Similarity=0.078 Sum_probs=68.3
Q ss_pred CccccCeEECC-CCcEEE-EECCCcEEEEe-cCC-c-E----EEeeccCCccccccceeEEcCCC-cEEEEeCCcccccc
Q 017317 116 GDTLLGITTTQ-ENEILV-CDADKGLLKVT-EEG-V-T----VLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLH 185 (373)
Q Consensus 116 ~~p~~gl~~d~-~g~L~v-a~~~~gl~~~~-~~g-~-~----~l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~ 185 (373)
+... ++++++ ++++++ +...+.|..++ +++ . . .+. ...+. ...+..+++.|++ ++.++.+.
T Consensus 76 ~~V~-~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~-~L~gH-~~~V~~l~f~P~~~~iLaSgs~------ 146 (493)
T PTZ00421 76 GPII-DVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIV-HLQGH-TKKVGIVSFHPSAMNVLASAGA------ 146 (493)
T ss_pred CCEE-EEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceE-EecCC-CCcEEEEEeCcCCCCEEEEEeC------
Confidence 4456 889988 666544 44444455666 433 2 1 111 11221 2356788999876 56655432
Q ss_pred ccccccccccCCceEEEEeCCCCeEEEeecC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317 186 NWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKDEDYLVVCETFKFRCLKYWLKG 249 (373)
Q Consensus 186 ~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~ 249 (373)
.+.|..+|..+++....... ......++|+++|+ ++++...++.|..||+..
T Consensus 147 -----------DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rs 199 (493)
T PTZ00421 147 -----------DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRD 199 (493)
T ss_pred -----------CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCC
Confidence 46788888776654433332 23457899999998 556666677888888654
No 111
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=97.40 E-value=0.13 Score=48.81 Aligned_cols=228 Identities=11% Similarity=0.037 Sum_probs=112.5
Q ss_pred EEEecCCCEEEEecCCeEEEEEcCC-ceEEeeee---cCccccCeEECCCCcEEEEECCCcEEEEecCC--cEEEeeccC
Q 017317 82 VCVDRNGVLYTATRDGWIKRLHKNG-TWENWKLI---GGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLASHVN 155 (373)
Q Consensus 82 ia~d~~G~l~v~~~~g~I~~~~~~g-~~~~~~~~---~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g--~~~l~~~~~ 155 (373)
|.+. +++.|+....|.|++-...| .++.+... +.... .+....++..|++...+.+++-+..| .+.+.....
T Consensus 142 v~f~-~~~g~~vG~~G~il~T~DgG~tW~~~~~~~~~p~~~~-~i~~~~~~~~~ivg~~G~v~~S~D~G~tW~~~~~~t~ 219 (398)
T PLN00033 142 ISFK-GKEGWIIGKPAILLHTSDGGETWERIPLSPKLPGEPV-LIKATGPKSAEMVTDEGAIYVTSNAGRNWKAAVEETV 219 (398)
T ss_pred eEEE-CCEEEEEcCceEEEEEcCCCCCceECccccCCCCCce-EEEEECCCceEEEeccceEEEECCCCCCceEcccccc
Confidence 4554 46677665666666654334 34443221 22233 34443445566655433344444444 333211000
Q ss_pred Cccc---------------cccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCe-EEEee-cCCC
Q 017317 156 GSRI---------------NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-TSILL-DSLF 218 (373)
Q Consensus 156 ~~~~---------------~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~-~~~~~-~~~~ 218 (373)
..++ .....+...+||.+++.... |.+++-+.++.. .+.+. ....
T Consensus 220 ~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~------------------G~~~~s~d~G~~~W~~~~~~~~~ 281 (398)
T PLN00033 220 SATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR------------------GNFYLTWEPGQPYWQPHNRASAR 281 (398)
T ss_pred cccccccccccccccceeccceeeEEEcCCCCEEEEECC------------------ccEEEecCCCCcceEEecCCCcc
Confidence 0000 01233556677777665432 567765544333 23322 2222
Q ss_pred CcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCc--ceeEEecC-CCCCCCceeECCCCCEEEEEecCCCchhhhccCC
Q 017317 219 FANGVALSKDEDYLVVCETFKFRCLKYWLKGESKE--QTEIFVEN-LPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTS 295 (373)
Q Consensus 219 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~--~~~~~~~~-~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~ 295 (373)
.-.++.+.+++. +|++.. .+.+++-.-.+..-. ++...... ......++.+.+++++|++...+
T Consensus 282 ~l~~v~~~~dg~-l~l~g~-~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G----------- 348 (398)
T PLN00033 282 RIQNMGWRADGG-LWLLTR-GGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSG----------- 348 (398)
T ss_pred ceeeeeEcCCCC-EEEEeC-CceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCC-----------
Confidence 346788888887 666543 344555432221110 11111101 11123446677899999998765
Q ss_pred hHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeCCCCeEEEe
Q 017317 296 KATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSLNTNFIGKL 368 (373)
Q Consensus 296 p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~~~~~i~~~ 368 (373)
.+++-...|+........++. ......+.+. +++.|+.+.++- |.|+
T Consensus 349 ------------------------~v~~s~D~G~tW~~~~~~~~~-~~~ly~v~f~~~~~g~~~G~~G~-il~~ 396 (398)
T PLN00033 349 ------------------------ILLRSTDGGKSWKRDKGADNI-AANLYSVKFFDDKKGFVLGNDGV-LLRY 396 (398)
T ss_pred ------------------------cEEEeCCCCcceeEccccCCC-CcceeEEEEcCCCceEEEeCCcE-EEEe
Confidence 355555677776654322322 2234566654 589999998774 4443
No 112
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.39 E-value=0.077 Score=47.63 Aligned_cols=160 Identities=14% Similarity=0.143 Sum_probs=84.5
Q ss_pred cCCeEEEEE--cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-c----------EEEeec-cCCccc
Q 017317 95 RDGWIKRLH--KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-V----------TVLASH-VNGSRI 159 (373)
Q Consensus 95 ~~g~I~~~~--~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~----------~~l~~~-~~~~~~ 159 (373)
..|+++.+- ++|+...+.....+++ ||+.++ ++||++..+ .|+++. .+. . ..+... ..-...
T Consensus 26 QagkL~~ig~~~~g~l~~~~r~F~r~M-Gl~~~~-~~l~~~t~~-qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGd 102 (335)
T TIGR03032 26 QAGKLFFIGLQPNGELDVFERTFPRPM-GLAVSP-QSLTLGTRY-QLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGD 102 (335)
T ss_pred ecceEEEEEeCCCCcEEEEeeccCccc-eeeeeC-CeEEEEEcc-eeEEcccccccccccccCCCCCeEEeeeeeeeccC
Confidence 445555553 4677666666678899 999864 589999864 588882 111 1 111110 000011
Q ss_pred cccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe----------ecCCCCcceEEEccCC
Q 017317 160 NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL----------LDSLFFANGVALSKDE 229 (373)
Q Consensus 160 ~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~----------~~~~~~~~gi~~~~dg 229 (373)
-.+.+|++ .++.+||.++. -.-|..+++. ..+... .+.-.+-||+|+. ||
T Consensus 103 idiHdia~-~~~~l~fVNT~-----------------fSCLatl~~~-~SF~P~WkPpFIs~la~eDRCHLNGlA~~-~g 162 (335)
T TIGR03032 103 IDAHDLAL-GAGRLLFVNTL-----------------FSCLATVSPD-YSFVPLWKPPFISKLAPEDRCHLNGMALD-DG 162 (335)
T ss_pred cchhheee-cCCcEEEEECc-----------------ceeEEEECCC-CccccccCCccccccCccCceeecceeee-CC
Confidence 23567888 57788887653 1345556654 222221 1122345899985 56
Q ss_pred CEEEEEeCCCC---eE---------EEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317 230 DYLVVCETFKF---RC---------LKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL 284 (373)
Q Consensus 230 ~~l~v~~~~~~---~i---------~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~ 284 (373)
+--||+-.+.. .- ..+|+... ++..+. -.+|.+-.. .+|+||+.....
T Consensus 163 ~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~-----evl~~G-LsmPhSPRW-hdgrLwvldsgt 222 (335)
T TIGR03032 163 EPRYVTALSQSDVADGWREGRRDGGCVIDIPSG-----EVVASG-LSMPHSPRW-YQGKLWLLNSGR 222 (335)
T ss_pred eEEEEEEeeccCCcccccccccCCeEEEEeCCC-----CEEEcC-ccCCcCCcE-eCCeEEEEECCC
Confidence 66787653321 11 11222211 222221 123444443 589999998764
No 113
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.35 E-value=0.11 Score=47.08 Aligned_cols=178 Identities=19% Similarity=0.207 Sum_probs=82.7
Q ss_pred CcceEEEecCCCEEEEecCCeEEEEEcCC-ceEEeeeecC-----ccccCeEECCCCcEEEEECCCcEEEEe-cCC--cE
Q 017317 78 GPEDVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKLIGG-----DTLLGITTTQENEILVCDADKGLLKVT-EEG--VT 148 (373)
Q Consensus 78 ~P~~ia~d~~G~l~v~~~~g~I~~~~~~g-~~~~~~~~~~-----~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g--~~ 148 (373)
...+|++..+.+-|+....|.|++=...| .++....... +-. .+.++ +.+.|++.. .+++... ..| .+
T Consensus 18 ~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~-~I~f~-~~~g~ivG~-~g~ll~T~DgG~tW~ 94 (302)
T PF14870_consen 18 PLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLN-SISFD-GNEGWIVGE-PGLLLHTTDGGKTWE 94 (302)
T ss_dssp -EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEE-EEEEE-TTEEEEEEE-TTEEEEESSTTSS-E
T ss_pred ceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEE-EEEec-CCceEEEcC-CceEEEecCCCCCcE
Confidence 45667777667777545567776654333 2433322111 123 56665 346777643 4554444 444 44
Q ss_pred EEee--ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCCcceEEE
Q 017317 149 VLAS--HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVAL 225 (373)
Q Consensus 149 ~l~~--~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~gi~~ 225 (373)
.+.. ..++ .+..+....++.++++.. .|.||+=...+...+.+... ...-+.+..
T Consensus 95 ~v~l~~~lpg----s~~~i~~l~~~~~~l~~~------------------~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r 152 (302)
T PF14870_consen 95 RVPLSSKLPG----SPFGITALGDGSAELAGD------------------RGAIYRTTDGGKTWQAVVSETSGSINDITR 152 (302)
T ss_dssp E----TT-SS-----EEEEEEEETTEEEEEET------------------T--EEEESSTTSSEEEEE-S----EEEEEE
T ss_pred EeecCCCCCC----CeeEEEEcCCCcEEEEcC------------------CCcEEEeCCCCCCeeEcccCCcceeEeEEE
Confidence 4421 2233 223444444566666543 26777776554455544322 233355667
Q ss_pred ccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317 226 SKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL 284 (373)
Q Consensus 226 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~ 284 (373)
++||+++.|+.. +.+++-+-.|.. ..+.+......+..++.++++|+||+.+.++
T Consensus 153 ~~dG~~vavs~~--G~~~~s~~~G~~--~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg 207 (302)
T PF14870_consen 153 SSDGRYVAVSSR--GNFYSSWDPGQT--TWQPHNRNSSRRIQSMGFSPDGNLWMLARGG 207 (302)
T ss_dssp -TTS-EEEEETT--SSEEEEE-TT-S--S-EEEE--SSS-EEEEEE-TTS-EEEEETTT
T ss_pred CCCCcEEEEECc--ccEEEEecCCCc--cceEEccCccceehhceecCCCCEEEEeCCc
Confidence 899986666643 446654433321 1222221223456678899999999999776
No 114
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.31 E-value=0.03 Score=51.72 Aligned_cols=159 Identities=18% Similarity=0.228 Sum_probs=88.3
Q ss_pred cCCcceEEEe-cCCCEEEEecCCe------EEEEEcC---C---ceEE-----eeeecC--------ccccCeEECCCCc
Q 017317 76 LNGPEDVCVD-RNGVLYTATRDGW------IKRLHKN---G---TWEN-----WKLIGG--------DTLLGITTTQENE 129 (373)
Q Consensus 76 ~~~P~~ia~d-~~G~l~v~~~~g~------I~~~~~~---g---~~~~-----~~~~~~--------~p~~gl~~d~~g~ 129 (373)
+.+=.+|+++ .+|.+|+-+.+|. ++.+..+ + .++. +....+ .+- ||++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~E-gi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPE-GIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChh-HeEEecCCC
Confidence 4556788998 4777776666666 6665511 1 1111 111112 345 888888999
Q ss_pred EEEEECC-------CcEEEEecCC-c-EEEe--ecc-------CC-ccccccceeEEcCCCc-EEEEeCCcccccccccc
Q 017317 130 ILVCDAD-------KGLLKVTEEG-V-TVLA--SHV-------NG-SRINLADDLIAATDGS-IYFSVASTKFGLHNWGL 189 (373)
Q Consensus 130 L~va~~~-------~gl~~~~~~g-~-~~l~--~~~-------~~-~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~ 189 (373)
+||++.+ ..|++++.+| . +.+. ... .+ .......+|++.+||+ ||+...+...+-.. ..
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~-~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP-RA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc-cc
Confidence 9999653 4688888557 3 3331 111 11 1334677899999997 88886542111000 00
Q ss_pred ccccccCCceEEEEeCCCCe--EEE---eec------CCCCcceEEEccCCCEEEEEeCC
Q 017317 190 DLLEAKPHGKLLKYDPSLNE--TSI---LLD------SLFFANGVALSKDEDYLVVCETF 238 (373)
Q Consensus 190 ~~~~~~~~g~l~~~d~~~~~--~~~---~~~------~~~~~~gi~~~~dg~~l~v~~~~ 238 (373)
.. .....-+|++||+.+.. ... ..+ ....+..++..++++ ++|.|..
T Consensus 177 ~~-~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~ 234 (326)
T PF13449_consen 177 NP-DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERD 234 (326)
T ss_pred cc-ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEcc
Confidence 00 11112578999987522 121 122 223345567778887 8888875
No 115
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.29 E-value=0.12 Score=51.07 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=61.6
Q ss_pred CCCEEEEecCCeEEEEE-cCCceEEeeee--c--Cc--------cccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEe
Q 017317 87 NGVLYTATRDGWIKRLH-KNGTWENWKLI--G--GD--------TLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLA 151 (373)
Q Consensus 87 ~G~l~v~~~~g~I~~~~-~~g~~~~~~~~--~--~~--------p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~ 151 (373)
+|.||+++.++.|+.+| .+|+..-.... . .. .. ++++. ++++|+++....++.+| .+| ...-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~r-g~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNR-GVALY-DGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccc-cceEE-CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 78999999889999999 56753221111 0 00 12 44453 57899988777899999 788 33221
Q ss_pred eccCCcc--ccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE
Q 017317 152 SHVNGSR--INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS 211 (373)
Q Consensus 152 ~~~~~~~--~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~ 211 (373)
. ..... ......-.+ .+|.||++..+.+++ ..|.|+.+|.++|+..
T Consensus 147 ~-~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~~------------~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 147 K-NGDYKAGYTITAAPLV-VKGKVITGISGGEFG------------VRGYVTAYDAKTGKLV 194 (527)
T ss_pred c-cccccccccccCCcEE-ECCEEEEeecccccC------------CCcEEEEEECCCCcee
Confidence 1 11110 000111122 267888876432211 2467778887777644
No 116
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.27 E-value=0.044 Score=50.41 Aligned_cols=180 Identities=13% Similarity=0.118 Sum_probs=102.4
Q ss_pred cCCcceEEEecC--C-CEEEEecCCeEEEEEcCCc--eEEeeeecCccccCeEECCCCcEEEEECCCcEEE-Ee-cCCcE
Q 017317 76 LNGPEDVCVDRN--G-VLYTATRDGWIKRLHKNGT--WENWKLIGGDTLLGITTTQENEILVCDADKGLLK-VT-EEGVT 148 (373)
Q Consensus 76 ~~~P~~ia~d~~--G-~l~v~~~~g~I~~~~~~g~--~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~-~~-~~g~~ 148 (373)
...-.++.+.|. + .|-.+..+|.+..++.++. ...+.....+.. -++|+|+|+.........-++ +| .++.+
T Consensus 217 ~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs-~VafHPsG~~L~TasfD~tWRlWD~~tk~E 295 (459)
T KOG0272|consen 217 TSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS-RVAFHPSGKFLGTASFDSTWRLWDLETKSE 295 (459)
T ss_pred ccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe-eeeecCCCceeeecccccchhhcccccchh
Confidence 333445555553 2 4556667787766664432 122222234556 788999998766533322333 33 34422
Q ss_pred EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCCcceEEEcc
Q 017317 149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSK 227 (373)
Q Consensus 149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~gi~~~~ 227 (373)
.+.. .|. ...+.++++.+||.|..+.+- ...|+|| |..+++...++.+ .....+++|+|
T Consensus 296 lL~Q--EGH-s~~v~~iaf~~DGSL~~tGGl---------------D~~~RvW--DlRtgr~im~L~gH~k~I~~V~fsP 355 (459)
T KOG0272|consen 296 LLLQ--EGH-SKGVFSIAFQPDGSLAATGGL---------------DSLGRVW--DLRTGRCIMFLAGHIKEILSVAFSP 355 (459)
T ss_pred hHhh--ccc-ccccceeEecCCCceeeccCc---------------cchhhee--ecccCcEEEEecccccceeeEeECC
Confidence 2211 121 235789999999999887543 2346776 4456776665554 44457899999
Q ss_pred CCCEEEEEeCCCCeEEEEEecCCCCcceeEEe-cCCCCCCCceeECCCCCEEEEE
Q 017317 228 DEDYLVVCETFKFRCLKYWLKGESKEQTEIFV-ENLPGGPDNIKLAPDGSFWIAI 281 (373)
Q Consensus 228 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~g~p~~i~~d~dG~lwva~ 281 (373)
.|- .+.+.+.++.+..+|+..... .+. ..-......+++++++..++++
T Consensus 356 NGy-~lATgs~Dnt~kVWDLR~r~~----ly~ipAH~nlVS~Vk~~p~~g~fL~T 405 (459)
T KOG0272|consen 356 NGY-HLATGSSDNTCKVWDLRMRSE----LYTIPAHSNLVSQVKYSPQEGYFLVT 405 (459)
T ss_pred Cce-EEeecCCCCcEEEeeeccccc----ceecccccchhhheEecccCCeEEEE
Confidence 995 677777777777777765332 111 1111245668888744444443
No 117
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.27 E-value=0.0084 Score=51.44 Aligned_cols=131 Identities=15% Similarity=0.165 Sum_probs=76.6
Q ss_pred CCCCcEEEEECCCcEEEEe-cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEE
Q 017317 125 TQENEILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLL 201 (373)
Q Consensus 125 d~~g~L~va~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~ 201 (373)
..|..+.-+...+.+..+| .+| .+.+.. ...++.+.+.+||++.....+ +.|-
T Consensus 153 ~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~------~s~VtSlEvs~dG~ilTia~g------------------ssV~ 208 (334)
T KOG0278|consen 153 HEDKCILSSADDKTVRLWDHRTGTEVQSLEF------NSPVTSLEVSQDGRILTIAYG------------------SSVK 208 (334)
T ss_pred ccCceEEeeccCCceEEEEeccCcEEEEEec------CCCCcceeeccCCCEEEEecC------------------ceeE
Confidence 3454555444445677777 777 333321 124678899999987655432 4677
Q ss_pred EEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEE
Q 017317 202 KYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI 281 (373)
Q Consensus 202 ~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~ 281 (373)
-+|+++-....-..-..+.+...++|+.. +||+......+++||..... ....+...-+|-.-.+.+.+||.+|...
T Consensus 209 Fwdaksf~~lKs~k~P~nV~SASL~P~k~-~fVaGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 209 FWDAKSFGLLKSYKMPCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASG 285 (334)
T ss_pred EeccccccceeeccCccccccccccCCCc-eEEecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeecc
Confidence 77775432221112223345667889985 99999888999999976431 1112211223333456777888777654
Q ss_pred e
Q 017317 282 L 282 (373)
Q Consensus 282 ~ 282 (373)
.
T Consensus 286 S 286 (334)
T KOG0278|consen 286 S 286 (334)
T ss_pred C
Confidence 3
No 118
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.27 E-value=0.14 Score=51.79 Aligned_cols=150 Identities=16% Similarity=0.185 Sum_probs=91.1
Q ss_pred CCcceEEEecCCCEE-EEecCCeEEEEEc--C-CceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cE-E
Q 017317 77 NGPEDVCVDRNGVLY-TATRDGWIKRLHK--N-GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VT-V 149 (373)
Q Consensus 77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~~~--~-g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~-~ 149 (373)
.|=..|++|++|... +...+|.|.+++. + -..+.+........ +++.+. +.+..+...+.+.++. +++ .. +
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~-~ia~~s-~~f~~~s~~~tv~~y~fps~~~~~i 91 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVS-SIACYS-NHFLTGSEQNTVLRYKFPSGEEDTI 91 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeE-EEeecc-cceEEeeccceEEEeeCCCCCccce
Confidence 445678999988744 5557888888872 2 12333222222334 666653 3666666666777777 666 33 3
Q ss_pred EeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceEEEccC
Q 017317 150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKD 228 (373)
Q Consensus 150 l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~~d 228 (373)
+.. .. ...++++++.+|...++.++ .-.|-.++.++...+....+...| -++.++|.
T Consensus 92 L~R-ft----lp~r~~~v~g~g~~iaagsd-----------------D~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~ 149 (933)
T KOG1274|consen 92 LAR-FT----LPIRDLAVSGSGKMIAAGSD-----------------DTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPK 149 (933)
T ss_pred eee-ee----ccceEEEEecCCcEEEeecC-----------------ceeEEEEeccccchheeecccCCceeeeeEcCC
Confidence 322 11 12468899999987666443 124556666555545555555444 57999999
Q ss_pred CCEEEEEeCCCCeEEEEEecCCC
Q 017317 229 EDYLVVCETFKFRCLKYWLKGES 251 (373)
Q Consensus 229 g~~l~v~~~~~~~i~~~~~~~~~ 251 (373)
+++|-++. .++.+..|+++...
T Consensus 150 ~~fLAvss-~dG~v~iw~~~~~~ 171 (933)
T KOG1274|consen 150 GNFLAVSS-CDGKVQIWDLQDGI 171 (933)
T ss_pred CCEEEEEe-cCceEEEEEcccch
Confidence 99666665 56789999887543
No 119
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.26 E-value=0.043 Score=46.62 Aligned_cols=130 Identities=16% Similarity=0.097 Sum_probs=75.6
Q ss_pred eEEEEE-cCCceEEeeeec-CccccCeEECCCCcEE-EEE--CCCcEEEEecCC--cEEEeeccCCccccccceeEEcCC
Q 017317 98 WIKRLH-KNGTWENWKLIG-GDTLLGITTTQENEIL-VCD--ADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATD 170 (373)
Q Consensus 98 ~I~~~~-~~g~~~~~~~~~-~~p~~gl~~d~~g~L~-va~--~~~gl~~~~~~g--~~~l~~~~~~~~~~~~~~l~~~~d 170 (373)
.|+.++ .+.....+.... +... .+++.|+|+-+ |+. ....+..++..+ +..+ . ....+.|.++|+
T Consensus 40 ~l~~~~~~~~~~~~i~l~~~~~I~-~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~----~---~~~~n~i~wsP~ 111 (194)
T PF08662_consen 40 ELFYLNEKNIPVESIELKKEGPIH-DVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSF----G---TQPRNTISWSPD 111 (194)
T ss_pred EEEEEecCCCccceeeccCCCceE-EEEECcCCCEEEEEEccCCcccEEEcCcccEeEee----c---CCCceEEEECCC
Confidence 567776 333343333222 2355 99999999643 442 223455565333 2222 1 134578999999
Q ss_pred CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCC-----CCeEEEE
Q 017317 171 GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF-----KFRCLKY 245 (373)
Q Consensus 171 G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~-----~~~i~~~ 245 (373)
|++.+..+. +...|.|..+|.++.+... .........++|+|||+++..+.+. .+++..|
T Consensus 112 G~~l~~~g~--------------~n~~G~l~~wd~~~~~~i~-~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw 176 (194)
T PF08662_consen 112 GRFLVLAGF--------------GNLNGDLEFWDVRKKKKIS-TFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIW 176 (194)
T ss_pred CCEEEEEEc--------------cCCCcEEEEEECCCCEEee-ccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEE
Confidence 987666432 1234678889887444322 1223346789999999988877653 3455566
Q ss_pred EecCC
Q 017317 246 WLKGE 250 (373)
Q Consensus 246 ~~~~~ 250 (373)
+..|.
T Consensus 177 ~~~G~ 181 (194)
T PF08662_consen 177 SFQGR 181 (194)
T ss_pred EecCe
Confidence 65554
No 120
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.26 E-value=0.0082 Score=55.67 Aligned_cols=184 Identities=17% Similarity=0.174 Sum_probs=103.9
Q ss_pred ceEEEecCCCEE-EEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECCCcEEEEe-cCC--cEEEeec
Q 017317 80 EDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG--VTVLASH 153 (373)
Q Consensus 80 ~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g--~~~l~~~ 153 (373)
+...+.+++... +...+|.|+.+. .++++..-....+... +++|+.+|+ ||++...+-++.+| ... ...+.+
T Consensus 307 e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~-~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D- 384 (514)
T KOG2055|consen 307 ERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVS-DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD- 384 (514)
T ss_pred heeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEe-eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-
Confidence 446666666644 444678888887 4554433333456677 899998885 66665555688888 444 333322
Q ss_pred cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE----Ee--ecCCC-CcceEEEc
Q 017317 154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS----IL--LDSLF-FANGVALS 226 (373)
Q Consensus 154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~----~~--~~~~~-~~~gi~~~ 226 (373)
.| .-.-..++...+|. |+++++ ..|-|-.||.++-... .+ .+.+. ..+.++|.
T Consensus 385 -~G--~v~gts~~~S~ng~-ylA~GS----------------~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn 444 (514)
T KOG2055|consen 385 -DG--SVHGTSLCISLNGS-YLATGS----------------DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN 444 (514)
T ss_pred -cC--ccceeeeeecCCCc-eEEecc----------------CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence 11 11334678888888 666654 3466777775432111 11 11121 23578999
Q ss_pred cCCCEEEEEeCCC-CeEEEEEecCCCCcceeEEec--CCCCCCCceeECCCC-CEEEEEecCCCc
Q 017317 227 KDEDYLVVCETFK-FRCLKYWLKGESKEQTEIFVE--NLPGGPDNIKLAPDG-SFWIAILQLSSP 287 (373)
Q Consensus 227 ~dg~~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~--~~~g~p~~i~~d~dG-~lwva~~~~~~~ 287 (373)
+|.+.|-++.+.. +.+....+. ....+..|-. ..-+++..+++++.| .+-+++-.++..
T Consensus 445 ~d~qiLAiaS~~~knalrLVHvP--S~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~ 507 (514)
T KOG2055|consen 445 HDAQILAIASRVKKNALRLVHVP--SCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVH 507 (514)
T ss_pred cchhhhhhhhhccccceEEEecc--ceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCcee
Confidence 9999777766543 333333322 2222222211 223678889999955 566777666543
No 121
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.24 E-value=0.038 Score=55.62 Aligned_cols=175 Identities=12% Similarity=0.104 Sum_probs=100.4
Q ss_pred EEEecCCCEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEEC-CCcEEEEe-cCC-cEEEeeccCCc
Q 017317 82 VCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDA-DKGLLKVT-EEG-VTVLASHVNGS 157 (373)
Q Consensus 82 ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~-~~gl~~~~-~~g-~~~l~~~~~~~ 157 (373)
++.+ .+.+.+++.++.|.++. +.++...+..-..-|...++++.+|+..++.. ...|-.++ .++ .+.......+
T Consensus 62 ia~~-s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a- 139 (933)
T KOG1274|consen 62 IACY-SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA- 139 (933)
T ss_pred Eeec-ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC-
Confidence 4443 34666888899999888 55554433222233333678888887766533 34555555 444 3333222222
Q ss_pred cccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCC---------cceEEEccC
Q 017317 158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF---------ANGVALSKD 228 (373)
Q Consensus 158 ~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~---------~~gi~~~~d 228 (373)
.+..|.++|+|++....+ .+|.|+.+|.+++......+++.. ..-++|+|+
T Consensus 140 ---pVl~l~~~p~~~fLAvss-----------------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk 199 (933)
T KOG1274|consen 140 ---PVLQLSYDPKGNFLAVSS-----------------CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPK 199 (933)
T ss_pred ---ceeeeeEcCCCCEEEEEe-----------------cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCC
Confidence 356889999998876643 368999999887765443333221 234789999
Q ss_pred CCEEEEEeCCCCeEEEEEecCCCCcceeEEecCC-CCCCCceeECCCCCEEEEE
Q 017317 229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENL-PGGPDNIKLAPDGSFWIAI 281 (373)
Q Consensus 229 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~g~p~~i~~d~dG~lwva~ 281 (373)
+..+.+.. .++.|..|...+-... + .+.++. ...-..+..++.|.+..+.
T Consensus 200 ~g~la~~~-~d~~Vkvy~r~~we~~-f-~Lr~~~~ss~~~~~~wsPnG~YiAAs 250 (933)
T KOG1274|consen 200 GGTLAVPP-VDNTVKVYSRKGWELQ-F-KLRDKLSSSKFSDLQWSPNGKYIAAS 250 (933)
T ss_pred CCeEEeec-cCCeEEEEccCCceeh-e-eecccccccceEEEEEcCCCcEEeee
Confidence 77666665 4567888875542110 0 111111 1113346678887655443
No 122
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.21 E-value=0.023 Score=52.58 Aligned_cols=111 Identities=17% Similarity=0.213 Sum_probs=65.0
Q ss_pred ccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE-EEe-e-c-------------CCCCcceEE
Q 017317 161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SIL-L-D-------------SLFFANGVA 224 (373)
Q Consensus 161 ~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-~~~-~-~-------------~~~~~~gi~ 224 (373)
-+.+|++.++|.+||++.... .....-.|++++.+ ++. +.+ . . ......+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~-----------~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la 153 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGR-----------TGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLA 153 (326)
T ss_pred ChhHeEEecCCCEEEEeCCcc-----------CCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEE
Confidence 456889988999999986410 00012579999987 443 222 1 1 112245899
Q ss_pred EccCCCEEEEEeCCC---------------CeEEEEEecCCC--CcceeEEecC-----CCCCCCceeECCCCCEEEEEe
Q 017317 225 LSKDEDYLVVCETFK---------------FRCLKYWLKGES--KEQTEIFVEN-----LPGGPDNIKLAPDGSFWIAIL 282 (373)
Q Consensus 225 ~~~dg~~l~v~~~~~---------------~~i~~~~~~~~~--~~~~~~~~~~-----~~g~p~~i~~d~dG~lwva~~ 282 (373)
+++||+.||++.... .+|.+|+...+. ...+....+. ....+..++.-++|+++|-.+
T Consensus 154 ~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER 233 (326)
T PF13449_consen 154 VSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER 233 (326)
T ss_pred ECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence 999999888765432 367778765321 2222111111 112345566668889998876
Q ss_pred c
Q 017317 283 Q 283 (373)
Q Consensus 283 ~ 283 (373)
.
T Consensus 234 ~ 234 (326)
T PF13449_consen 234 D 234 (326)
T ss_pred c
Confidence 6
No 123
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.13 E-value=0.019 Score=53.67 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=80.4
Q ss_pred EEEEecCC-eEEEEEc-CCceEEeeeecCccccCeEECCCCc-EEEEECCCcEEEEe-cCC-cEEEeeccCCccccccce
Q 017317 90 LYTATRDG-WIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADD 164 (373)
Q Consensus 90 l~v~~~~g-~I~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~ 164 (373)
+.+|+.+| .+-.++. .|+.+.+....++.. .+..+++|+ +.+++....|+.++ .+| .+.+-.... ..+.+
T Consensus 374 ~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~-av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~----~lItd 448 (668)
T COG4946 374 DVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE-AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEY----GLITD 448 (668)
T ss_pred eEEeccCCceEEEEecCCceEEEeeCCccceE-EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccccc----ceeEE
Confidence 33566555 5666664 345677766677888 889999997 66666555688888 788 666533222 24678
Q ss_pred eEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeC
Q 017317 165 LIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237 (373)
Q Consensus 165 l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~ 237 (373)
+++.++++...-. .+ ++-..-.|-.+|.++++.-.+-+....--.-+|+||+++||.-..
T Consensus 449 f~~~~nsr~iAYa------fP-------~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 449 FDWHPNSRWIAYA------FP-------EGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred EEEcCCceeEEEe------cC-------cceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 8888887643211 11 011123455677776665444333333345689999999998653
No 124
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.12 E-value=0.22 Score=46.90 Aligned_cols=78 Identities=22% Similarity=0.218 Sum_probs=54.3
Q ss_pred eEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEE
Q 017317 199 KLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFW 278 (373)
Q Consensus 199 ~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lw 278 (373)
.|-.||.++++.+.+..++..-..+.+++||+.+.+++ .+..|+.++++..+.. ..-....++.-++...+++ -|
T Consensus 383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididngnv~---~idkS~~~lItdf~~~~ns-r~ 457 (668)
T COG4946 383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNGNVR---LIDKSEYGLITDFDWHPNS-RW 457 (668)
T ss_pred eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCCCee---EecccccceeEEEEEcCCc-ee
Confidence 67788888899888888888889999999999777776 4668899998764322 2111233455556665554 34
Q ss_pred EEE
Q 017317 279 IAI 281 (373)
Q Consensus 279 va~ 281 (373)
+|-
T Consensus 458 iAY 460 (668)
T COG4946 458 IAY 460 (668)
T ss_pred EEE
Confidence 443
No 125
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.09 E-value=0.36 Score=47.97 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=74.4
Q ss_pred cccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-CCCCcceEEEccCCCEEEEEeCC
Q 017317 160 NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDEDYLVVCETF 238 (373)
Q Consensus 160 ~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~ 238 (373)
...+.++..|||.+.++... .|.|-.+|...+-..+..+ .-....++.|+..|+ .+++.+.
T Consensus 351 ~~i~~l~YSpDgq~iaTG~e-----------------DgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~-~llssSL 412 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAE-----------------DGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN-VLLSSSL 412 (893)
T ss_pred cceeeEEECCCCcEEEeccC-----------------CCcEEEEeccCceEEEEeccCCCceEEEEEEecCC-EEEEeec
Confidence 45778999999999887543 5788888887666554433 334457899999998 7777778
Q ss_pred CCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317 239 KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL 282 (373)
Q Consensus 239 ~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~ 282 (373)
++++..+|+.. ...++.|....+..-..++.|+.|.+.++..
T Consensus 413 DGtVRAwDlkR--YrNfRTft~P~p~QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 413 DGTVRAWDLKR--YRNFRTFTSPEPIQFSCVAVDPSGELVCAGA 454 (893)
T ss_pred CCeEEeeeecc--cceeeeecCCCceeeeEEEEcCCCCEEEeec
Confidence 88999998753 3455666544444456789999998877743
No 126
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.07 E-value=0.18 Score=43.93 Aligned_cols=145 Identities=14% Similarity=0.082 Sum_probs=77.2
Q ss_pred cceEEEecCCCEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeeccC
Q 017317 79 PEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVN 155 (373)
Q Consensus 79 P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~ 155 (373)
|--+.-|..-.+|+|+..+.+..+| ..|+..--.....+.- +-++--.+-+.++-+..+++.++ .+| .-......+
T Consensus 15 pLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE-~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~ 93 (354)
T KOG4649|consen 15 PLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIE-CSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE 93 (354)
T ss_pred cEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceee-eeeEEECCEEEEEEccCcEEEEEecchhheeeeeehh
Confidence 4334444456778999999999898 5665432222223332 21211223355666667788888 777 322211111
Q ss_pred CccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE-eecCCCCcceEEEcc-CCCEE
Q 017317 156 GSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFANGVALSK-DEDYL 232 (373)
Q Consensus 156 ~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~~gi~~~~-dg~~l 232 (373)
..+ . .-..|++| -||.+.. ++..|.+|+.+..... ..-+.....+-++++ ++ .|
T Consensus 94 ~vk---~-~a~~d~~~glIycgsh------------------d~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~-sl 150 (354)
T KOG4649|consen 94 TVK---V-RAQCDFDGGLIYCGSH------------------DGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDG-SL 150 (354)
T ss_pred hhc---c-ceEEcCCCceEEEecC------------------CCcEEEecccccceEEecccCCceeccceecCCCc-eE
Confidence 111 1 12456664 6888864 3678888887654322 111222223445666 55 49
Q ss_pred EEEeCCCCeEEEEEec
Q 017317 233 VVCETFKFRCLKYWLK 248 (373)
Q Consensus 233 ~v~~~~~~~i~~~~~~ 248 (373)
|++.+. +++.+...+
T Consensus 151 y~a~t~-G~vlavt~~ 165 (354)
T KOG4649|consen 151 YAAITA-GAVLAVTKN 165 (354)
T ss_pred EEEecc-ceEEEEccC
Confidence 998764 466665543
No 127
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.07 E-value=0.015 Score=54.18 Aligned_cols=179 Identities=12% Similarity=0.154 Sum_probs=107.5
Q ss_pred ceEEEecCCCEE-EEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCC-cEEEE-ECCCcEEEEe-cCC--cEEEee
Q 017317 80 EDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQEN-EILVC-DADKGLLKVT-EEG--VTVLAS 152 (373)
Q Consensus 80 ~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g-~L~va-~~~~gl~~~~-~~g--~~~l~~ 152 (373)
.++.+..+|.=+ .++.+..|..+| .+|+...-......|. .+.+.+++ +++++ ...+.|..+| ++| ++.+..
T Consensus 262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~-cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~ 340 (503)
T KOG0282|consen 262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPT-CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR 340 (503)
T ss_pred hhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCce-eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh
Confidence 445555556555 455666677777 5676554444445566 77888888 66654 5556789999 777 333322
Q ss_pred ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE-ee-cCCCCcceEEEccCCC
Q 017317 153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LL-DSLFFANGVALSKDED 230 (373)
Q Consensus 153 ~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~-~~~~~~~gi~~~~dg~ 230 (373)
.+..+++|.+-++|+=+|+.+. ..+-+||-++. ..... .. .....--.++++|.++
T Consensus 341 -----hLg~i~~i~F~~~g~rFissSD---------------dks~riWe~~~--~v~ik~i~~~~~hsmP~~~~~P~~~ 398 (503)
T KOG0282|consen 341 -----HLGAILDITFVDEGRRFISSSD---------------DKSVRIWENRI--PVPIKNIADPEMHTMPCLTLHPNGK 398 (503)
T ss_pred -----hhhheeeeEEccCCceEeeecc---------------CccEEEEEcCC--CccchhhcchhhccCcceecCCCCC
Confidence 2346788999999988887654 12223443332 21111 11 1122223578889988
Q ss_pred EEEEEeCCCCeEEEEEecCC-CCcceeEEec-CCCCCCCceeECCCCCEEEEEe
Q 017317 231 YLVVCETFKFRCLKYWLKGE-SKEQTEIFVE-NLPGGPDNIKLAPDGSFWIAIL 282 (373)
Q Consensus 231 ~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~-~~~g~p~~i~~d~dG~lwva~~ 282 (373)
.+.+.+..+.|..|....+ +....+.|.. ...|++-.+.+++||.+.+...
T Consensus 399 -~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd 451 (503)
T KOG0282|consen 399 -WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD 451 (503)
T ss_pred -eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeec
Confidence 7778888899998875432 2222223322 2467888899999998766644
No 128
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.05 E-value=0.53 Score=49.21 Aligned_cols=147 Identities=12% Similarity=0.043 Sum_probs=84.2
Q ss_pred cceEEEecCCCEE-EEecCCeEEEEEcC-----CceE----EeeeecCccccCeEECCC-Cc-EEEEECCCcEEEEe-cC
Q 017317 79 PEDVCVDRNGVLY-TATRDGWIKRLHKN-----GTWE----NWKLIGGDTLLGITTTQE-NE-ILVCDADKGLLKVT-EE 145 (373)
Q Consensus 79 P~~ia~d~~G~l~-v~~~~g~I~~~~~~-----g~~~----~~~~~~~~p~~gl~~d~~-g~-L~va~~~~gl~~~~-~~ 145 (373)
-.+++++++|.+. ++..++.|..++.. +... .......... ++++.+. +. |..+...+.+..+| .+
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~las~~~Dg~v~lWd~~~ 564 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS-GICWNSYIKSQVASSNFEGVVQVWDVAR 564 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee-eEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence 4558889988866 66788999888732 1110 0011122334 7777653 44 44444444455566 55
Q ss_pred C--cEEEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcce
Q 017317 146 G--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG 222 (373)
Q Consensus 146 g--~~~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~g 222 (373)
+ ...+.. ....+.++++.+ +|.++++.+. .+.|..+|..+++.............
T Consensus 565 ~~~~~~~~~-----H~~~V~~l~~~p~~~~~L~Sgs~-----------------Dg~v~iWd~~~~~~~~~~~~~~~v~~ 622 (793)
T PLN00181 565 SQLVTEMKE-----HEKRVWSIDYSSADPTLLASGSD-----------------DGSVKLWSINQGVSIGTIKTKANICC 622 (793)
T ss_pred CeEEEEecC-----CCCCEEEEEEcCCCCCEEEEEcC-----------------CCEEEEEECCCCcEEEEEecCCCeEE
Confidence 5 222211 113577899986 6777776543 46777788765554332222233455
Q ss_pred EEEc-cCCCEEEEEeCCCCeEEEEEecC
Q 017317 223 VALS-KDEDYLVVCETFKFRCLKYWLKG 249 (373)
Q Consensus 223 i~~~-~dg~~l~v~~~~~~~i~~~~~~~ 249 (373)
+.+. +++. .+++...++.|..|++..
T Consensus 623 v~~~~~~g~-~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 623 VQFPSESGR-SLAFGSADHKVYYYDLRN 649 (793)
T ss_pred EEEeCCCCC-EEEEEeCCCeEEEEECCC
Confidence 6674 4566 555556677899998754
No 129
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.05 E-value=0.066 Score=51.56 Aligned_cols=126 Identities=9% Similarity=0.153 Sum_probs=79.2
Q ss_pred ccccccceeEEcCC-CcEEEEeCCccccccccccccccccCCceEEEEeCCCC-------eEEEee--------cC----
Q 017317 157 SRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-------ETSILL--------DS---- 216 (373)
Q Consensus 157 ~~~~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-------~~~~~~--------~~---- 216 (373)
.++..+.++++.+. |.+|++.....-. ........+....|.|+||-+.++ +++.+. ..
T Consensus 414 T~mdRpE~i~~~p~~g~Vy~~lTNn~~r-~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~ 492 (616)
T COG3211 414 TPMDRPEWIAVNPGTGEVYFTLTNNGKR-SDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASA 492 (616)
T ss_pred ccccCccceeecCCcceEEEEeCCCCcc-ccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccccc
Confidence 46667889999875 6899997653222 111122233445688999988765 344332 11
Q ss_pred ------CCCcceEEEccCCCEEEEEeCCCC--------eEEEEEecCCCCcceeEEecCCC-CCCCceeECCCC-CEEEE
Q 017317 217 ------LFFANGVALSKDEDYLVVCETFKF--------RCLKYWLKGESKEQTEIFVENLP-GGPDNIKLAPDG-SFWIA 280 (373)
Q Consensus 217 ------~~~~~gi~~~~dg~~l~v~~~~~~--------~i~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d~dG-~lwva 280 (373)
+..|.+++|++.|+ ||+++.+.. ++......+++.++...|..... .-..|.++.+|| .++|+
T Consensus 493 ~~~~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 493 NINANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred CcccccccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence 34589999999998 898876543 23333344556667666654322 234568899999 58888
Q ss_pred EecC
Q 017317 281 ILQL 284 (373)
Q Consensus 281 ~~~~ 284 (373)
.-..
T Consensus 572 vQHP 575 (616)
T COG3211 572 VQHP 575 (616)
T ss_pred ecCC
Confidence 7543
No 130
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.03 E-value=0.024 Score=52.34 Aligned_cols=143 Identities=14% Similarity=0.127 Sum_probs=87.2
Q ss_pred cceEEEecCCCEE-EEecCCeEEEEE-cCC-ceEEeeeecCccccCeEECCCCcEEEEECCCc-EEEEe-c-CC-cEEEe
Q 017317 79 PEDVCVDRNGVLY-TATRDGWIKRLH-KNG-TWENWKLIGGDTLLGITTTQENEILVCDADKG-LLKVT-E-EG-VTVLA 151 (373)
Q Consensus 79 P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g-~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~g-l~~~~-~-~g-~~~l~ 151 (373)
-.+.++.|||.|+ .|+.+|-|-.|+ ..+ ....|....+... .|.|..+|...+.....+ +..+| + .. ++.+.
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk-~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVK-AISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCcee-EEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence 3567888999999 677888777777 333 2333433223334 899988886554433444 88888 3 23 33332
Q ss_pred eccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec---CCCCcceEEEccC
Q 017317 152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD---SLFFANGVALSKD 228 (373)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~---~~~~~~gi~~~~d 228 (373)
. ..+..++++.+|..|...+..++ .-.||.++..+++++.+.. .....+|+.|...
T Consensus 429 l----~~~~~v~s~~fD~SGt~L~~~g~-----------------~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~ 487 (506)
T KOG0289|consen 429 L----DEKKEVNSLSFDQSGTYLGIAGS-----------------DLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEH 487 (506)
T ss_pred c----cccccceeEEEcCCCCeEEeecc-----------------eeEEEEEecccccceeeehhhhcccccceeeeccc
Confidence 1 11235789999999976554332 2478888877777665432 1224577777765
Q ss_pred CCEEEEEeCCCCeEEEE
Q 017317 229 EDYLVVCETFKFRCLKY 245 (373)
Q Consensus 229 g~~l~v~~~~~~~i~~~ 245 (373)
. .|++.++..++.++
T Consensus 488 a--q~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 488 A--QYLASTSMDAILRL 502 (506)
T ss_pred c--eEEeeccchhheEE
Confidence 4 45555566666543
No 131
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.03 E-value=0.21 Score=44.09 Aligned_cols=189 Identities=12% Similarity=0.108 Sum_probs=109.9
Q ss_pred EeccCCcCCcceEEEecCCCEE-EEecCCeEEEEE--cCCceEEeeeecCccccCeEECCCCcEEEEECCC---cEEEEe
Q 017317 70 RLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLH--KNGTWENWKLIGGDTLLGITTTQENEILVCDADK---GLLKVT 143 (373)
Q Consensus 70 ~~~~g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~--~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~---gl~~~~ 143 (373)
+...|.+..-.++-..+|.+.. .++.+|+++.+| ...+...+.......+ .-++.|.|++..+..-. .||.+.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVM-tCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVM-TCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEE-EEEECCCCCeEEecCcCceeEEEecc
Confidence 4455666666777777766655 677899999999 3345555544455566 77888999987763322 244444
Q ss_pred -c--CCcEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCC
Q 017317 144 -E--EGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFF 219 (373)
Q Consensus 144 -~--~g~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~ 219 (373)
+ +|...+.....|.. .+.....+-.|+.|.-+.+ ......+|.++++......+ ...
T Consensus 128 ~~d~~g~~~v~r~l~gHt-gylScC~f~dD~~ilT~SG------------------D~TCalWDie~g~~~~~f~GH~gD 188 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHT-GYLSCCRFLDDNHILTGSG------------------DMTCALWDIETGQQTQVFHGHTGD 188 (343)
T ss_pred cccccccceeeeeecCcc-ceeEEEEEcCCCceEecCC------------------CceEEEEEcccceEEEEecCCccc
Confidence 3 33222222233321 2455556656777765432 24566677777765544433 333
Q ss_pred cceEEEcc-CCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317 220 ANGVALSK-DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL 282 (373)
Q Consensus 220 ~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~ 282 (373)
.-++.++| +++ .|++..-......+|+.... -.+.|... ..-.+.+++-++|.-+++..
T Consensus 189 V~slsl~p~~~n-tFvSg~cD~~aklWD~R~~~--c~qtF~gh-esDINsv~ffP~G~afatGS 248 (343)
T KOG0286|consen 189 VMSLSLSPSDGN-TFVSGGCDKSAKLWDVRSGQ--CVQTFEGH-ESDINSVRFFPSGDAFATGS 248 (343)
T ss_pred EEEEecCCCCCC-eEEecccccceeeeeccCcc--eeEeeccc-ccccceEEEccCCCeeeecC
Confidence 45788888 777 78876655556666665432 22333321 22355677777776666544
No 132
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=97.00 E-value=0.32 Score=45.81 Aligned_cols=107 Identities=16% Similarity=0.239 Sum_probs=64.3
Q ss_pred CCCEEEEecCCeEEEEEc-CCceEEeeeecC--ccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeeccCCccccc
Q 017317 87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGG--DTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINL 161 (373)
Q Consensus 87 ~G~l~v~~~~g~I~~~~~-~g~~~~~~~~~~--~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~ 161 (373)
+|+||+++.+|.++.++. +|+..-.....+ .-. +-.+-.++.+|+.+....++.++ .+| .........+.....
T Consensus 111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~-~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~ 189 (370)
T COG1520 111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA-SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSI 189 (370)
T ss_pred CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEe-cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccccc
Confidence 899999999999999996 787654433333 122 33344678888885446688998 567 433222111011111
Q ss_pred cceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE
Q 017317 162 ADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS 211 (373)
Q Consensus 162 ~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~ 211 (373)
..... ..+|.+|++... - .+.++.+|+.+++..
T Consensus 190 ~~~~~-~~~~~vy~~~~~---------------~-~~~~~a~~~~~G~~~ 222 (370)
T COG1520 190 YGSPA-IASGTVYVGSDG---------------Y-DGILYALNAEDGTLK 222 (370)
T ss_pred ccCce-eecceEEEecCC---------------C-cceEEEEEccCCcEe
Confidence 22222 557889988541 0 246888888767644
No 133
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.00 E-value=0.11 Score=44.02 Aligned_cols=128 Identities=13% Similarity=0.090 Sum_probs=73.6
Q ss_pred CCCcEEEEECCCcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEE
Q 017317 126 QENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLK 202 (373)
Q Consensus 126 ~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~ 202 (373)
..+.-|.+. ..+++++ .+. ...+..... ..+.+++..|+|+ +.+..+. ....+..
T Consensus 30 ~~~ks~~~~--~~l~~~~~~~~~~~~i~l~~~----~~I~~~~WsP~g~~favi~g~----------------~~~~v~l 87 (194)
T PF08662_consen 30 KSGKSYYGE--FELFYLNEKNIPVESIELKKE----GPIHDVAWSPNGNEFAVIYGS----------------MPAKVTL 87 (194)
T ss_pred cCcceEEee--EEEEEEecCCCccceeeccCC----CceEEEEECcCCCEEEEEEcc----------------CCcccEE
Confidence 444444443 2477776 333 443322211 1378999999995 4444321 1236777
Q ss_pred EeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEE
Q 017317 203 YDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK--FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280 (373)
Q Consensus 203 ~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva 280 (373)
||.+...+..+. -...|.+.|+|+|+++.++..++ +.+..||.... +............++.++||++.++
T Consensus 88 yd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-----~~i~~~~~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-----KKISTFEHSDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-----EEeeccccCcEEEEEEcCCCCEEEE
Confidence 777644443332 23457899999999888876543 45777776521 1222122223556788999998777
Q ss_pred Ee
Q 017317 281 IL 282 (373)
Q Consensus 281 ~~ 282 (373)
..
T Consensus 161 a~ 162 (194)
T PF08662_consen 161 AT 162 (194)
T ss_pred EE
Confidence 54
No 134
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.00 E-value=0.047 Score=49.74 Aligned_cols=189 Identities=16% Similarity=0.144 Sum_probs=108.0
Q ss_pred ceeEeccCCcCCcceEEEecCCCEEEEecCCeEEEEE-cCCceEEe-eeecCccccCeE-----------ECC-------
Q 017317 67 SVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENW-KLIGGDTLLGIT-----------TTQ------- 126 (373)
Q Consensus 67 ~~~~~~~g~~~~P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~-~~~~~~p~~gl~-----------~d~------- 126 (373)
+......|-...-.++-..-+|.||.|+.++.|..++ .+|..-.. .......+ .|+ |++
T Consensus 238 ~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN-~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 238 TCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVN-HLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred eEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchhee-eeeccchhhhhccccccccccCCC
Confidence 3444445555556677777789999999999998887 45532111 00000011 111 111
Q ss_pred ------------------CC-cEEEEECCCcEEEEecCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccc
Q 017317 127 ------------------EN-EILVCDADKGLLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHN 186 (373)
Q Consensus 127 ------------------~g-~L~va~~~~gl~~~~~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~ 186 (373)
.| +|.-+..+..++.+++.. .+.+. ...| ....+|.+.+.|||+...+.+-
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~-rmtg-Hq~lVn~V~fSPd~r~IASaSF------- 387 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPIT-RMTG-HQALVNHVSFSPDGRYIASASF------- 387 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchh-hhhc-hhhheeeEEECCCccEEEEeec-------
Confidence 12 233343334566665322 22211 1111 2346889999999987666442
Q ss_pred cccccccccCCceEEEEeCCCCeEEEeecC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCC
Q 017317 187 WGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGG 265 (373)
Q Consensus 187 ~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ 265 (373)
...|-.+|..+|++-..+.+ .....-++++.|.+ |+|+.+.+..+..+++..++ ....+||.
T Consensus 388 ----------DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkK------l~~DLpGh 450 (480)
T KOG0271|consen 388 ----------DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKK------LKQDLPGH 450 (480)
T ss_pred ----------ccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeee------ecccCCCC
Confidence 23455667777765433332 23345689999987 99999888889888876543 23367776
Q ss_pred CCce-eE--CCCCCEEEEEe
Q 017317 266 PDNI-KL--APDGSFWIAIL 282 (373)
Q Consensus 266 p~~i-~~--d~dG~lwva~~ 282 (373)
.|.+ ++ .+||..-++..
T Consensus 451 ~DEVf~vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 451 ADEVFAVDWSPDGQRVASGG 470 (480)
T ss_pred CceEEEEEecCCCceeecCC
Confidence 6664 33 47887666543
No 135
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=96.98 E-value=0.0036 Score=38.49 Aligned_cols=38 Identities=24% Similarity=0.005 Sum_probs=33.3
Q ss_pred eecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC
Q 017317 213 LLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE 250 (373)
Q Consensus 213 ~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~ 250 (373)
+..++..|+|+++++.++.+||++.....|.+++++|.
T Consensus 4 ~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 4 LSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred EECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 34567889999999999999999999999999988764
No 136
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=96.98 E-value=0.019 Score=56.24 Aligned_cols=78 Identities=21% Similarity=0.234 Sum_probs=46.0
Q ss_pred ccccccceeEEcCCCcEEEEeCCcccccc-----ccc--cccccccCCceEEEEeCCCCeEEEeecC--CCCcceEEEcc
Q 017317 157 SRINLADDLIAATDGSIYFSVASTKFGLH-----NWG--LDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSK 227 (373)
Q Consensus 157 ~~~~~~~~l~~~~dG~l~v~~~~~~~~~~-----~~~--~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~~gi~~~~ 227 (373)
..+..|..|+++++|+|||.+........ ... ..+....... ++..++.+++...++.. .....|++|+|
T Consensus 433 ~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~-~~~~~~~~g~~~rf~~~P~gaE~tG~~fsp 511 (524)
T PF05787_consen 433 NGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNN-VWAYDPDTGELKRFLVGPNGAEITGPCFSP 511 (524)
T ss_pred CCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccce-eeeccccccceeeeccCCCCcccccceECC
Confidence 34567888999999999998643211100 000 0000001111 55566777776665543 34457999999
Q ss_pred CCCEEEEE
Q 017317 228 DEDYLVVC 235 (373)
Q Consensus 228 dg~~l~v~ 235 (373)
|+++||+.
T Consensus 512 Dg~tlFvn 519 (524)
T PF05787_consen 512 DGRTLFVN 519 (524)
T ss_pred CCCEEEEE
Confidence 99988885
No 137
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.97 E-value=0.28 Score=44.56 Aligned_cols=220 Identities=15% Similarity=0.186 Sum_probs=100.3
Q ss_pred EEEecCCCEEEEecCCeEEEEEcCC-ceEEeee---ecCccccCeEECCCCcEEEEECCCcEEEEecCC--cEEEeeccC
Q 017317 82 VCVDRNGVLYTATRDGWIKRLHKNG-TWENWKL---IGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLASHVN 155 (373)
Q Consensus 82 ia~d~~G~l~v~~~~g~I~~~~~~g-~~~~~~~---~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g--~~~l~~~~~ 155 (373)
|.++ +...|+....|.|++-...| .++.+.. .++.+. ++....++..+++.....|++-...| .+.+.....
T Consensus 67 I~f~-~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~-~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~ 144 (302)
T PF14870_consen 67 ISFD-GNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPF-GITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETS 144 (302)
T ss_dssp EEEE-TTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EE-EEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S--
T ss_pred EEec-CCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCee-EEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCc
Confidence 4443 45677655566666554334 4555432 245666 66655566777766555566655444 454433222
Q ss_pred CccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEE-EeCCCCeEEEeec-CCCCcceEEEccCCCEEE
Q 017317 156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLK-YDPSLNETSILLD-SLFFANGVALSKDEDYLV 233 (373)
Q Consensus 156 ~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~-~d~~~~~~~~~~~-~~~~~~gi~~~~dg~~l~ 233 (373)
...+++...+||++..... .|.+|. .|+.....+.... ....-..+.|++++. ||
T Consensus 145 ----gs~~~~~r~~dG~~vavs~------------------~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw 201 (302)
T PF14870_consen 145 ----GSINDITRSSDGRYVAVSS------------------RGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LW 201 (302)
T ss_dssp ------EEEEEE-TTS-EEEEET------------------TSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EE
T ss_pred ----ceeEeEEECCCCcEEEEEC------------------cccEEEEecCCCccceEEccCccceehhceecCCCC-EE
Confidence 2456777888888554433 255653 4543222343322 233456788999987 88
Q ss_pred EEeCCCCeEEEEEecCCCCcceeEEecC-CC----CC-CCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcch
Q 017317 234 VCETFKFRCLKYWLKGESKEQTEIFVEN-LP----GG-PDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPK 307 (373)
Q Consensus 234 v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~----g~-p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~ 307 (373)
+... ...|..=+ .. ...+.+... .+ ++ .-.++..+++.+|++...+
T Consensus 202 ~~~~-Gg~~~~s~-~~---~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G----------------------- 253 (302)
T PF14870_consen 202 MLAR-GGQIQFSD-DP---DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG----------------------- 253 (302)
T ss_dssp EEET-TTEEEEEE--T---TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-----------------------
T ss_pred EEeC-CcEEEEcc-CC---CCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-----------------------
Confidence 8763 33444433 11 112222211 11 11 1235778889999998765
Q ss_pred hhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEE-eCCEEEEeeCCCCeEEEe
Q 017317 308 LIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALE-FDDHLYLGSLNTNFIGKL 368 (373)
Q Consensus 308 ~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~vgs~~~~~i~~~ 368 (373)
.+++=...|+..+.....+... .....+.+ .+++-|+-..++- |.|+
T Consensus 254 ------------~l~~S~DgGktW~~~~~~~~~~-~n~~~i~f~~~~~gf~lG~~G~-ll~~ 301 (302)
T PF14870_consen 254 ------------TLLVSTDGGKTWQKDRVGENVP-SNLYRIVFVNPDKGFVLGQDGV-LLRY 301 (302)
T ss_dssp -------------EEEESSTTSS-EE-GGGTTSS-S---EEEEEETTEEEEE-STTE-EEEE
T ss_pred ------------cEEEeCCCCccceECccccCCC-CceEEEEEcCCCceEEECCCcE-EEEe
Confidence 2444445677776554322222 23445554 4567776665553 4443
No 138
>PRK01029 tolB translocation protein TolB; Provisional
Probab=96.96 E-value=0.4 Score=46.18 Aligned_cols=157 Identities=11% Similarity=0.065 Sum_probs=77.6
Q ss_pred eEEEEEcCCc-eEEeeeecCccccCeEECCCCc----EEEEECC--CcEEEEe-cCC-cEEEeeccCCccccccceeEEc
Q 017317 98 WIKRLHKNGT-WENWKLIGGDTLLGITTTQENE----ILVCDAD--KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAA 168 (373)
Q Consensus 98 ~I~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~----L~va~~~--~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~ 168 (373)
.|+..+.+|. ...+........ .-++.+||+ +|+.... ..|+.++ .+| .+.+.. ..+. .....+.
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~-sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~----~~~p~wS 239 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSI-TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGN----QLMPTFS 239 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcc-cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCC----ccceEEC
Confidence 5556665543 222222122223 567889985 2344322 3478887 556 555543 2221 2245889
Q ss_pred CCC-cEEEEeCCccccccccccccccccCCceEEE--EeCCC---CeEEEeecC-CCCcceEEEccCCCEEEEEeC--CC
Q 017317 169 TDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLK--YDPSL---NETSILLDS-LFFANGVALSKDEDYLVVCET--FK 239 (373)
Q Consensus 169 ~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~--~d~~~---~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~--~~ 239 (373)
||| .|.++... . +...+|. ++.++ ++.+.+... .......+|+|||+.|+++.. +.
T Consensus 240 PDG~~Laf~s~~--~-------------g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~ 304 (428)
T PRK01029 240 PRKKLLAFISDR--Y-------------GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGR 304 (428)
T ss_pred CCCCEEEEEECC--C-------------CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCC
Confidence 999 56554321 0 1112333 34332 233333322 223345799999998777653 23
Q ss_pred CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCE
Q 017317 240 FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF 277 (373)
Q Consensus 240 ~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l 277 (373)
..|+++++++.. +....+. ...+.......++||+.
T Consensus 305 ~~ly~~~~~~~g-~~~~~lt-~~~~~~~~p~wSPDG~~ 340 (428)
T PRK01029 305 PRIYIMQIDPEG-QSPRLLT-KKYRNSSCPAWSPDGKK 340 (428)
T ss_pred ceEEEEECcccc-cceEEec-cCCCCccceeECCCCCE
Confidence 467777764321 1122222 11223345677888873
No 139
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.94 E-value=0.23 Score=43.19 Aligned_cols=104 Identities=16% Similarity=0.188 Sum_probs=61.7
Q ss_pred CCCEEEEecCCeEEEEE-cCCc-eEEeeeecCccccCeEECCCC-cEEEEECCCcEEEEe-cCCcEEEeeccCCcccccc
Q 017317 87 NGVLYTATRDGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-EEGVTVLASHVNGSRINLA 162 (373)
Q Consensus 87 ~G~l~v~~~~g~I~~~~-~~g~-~~~~~~~~~~p~~gl~~d~~g-~L~va~~~~gl~~~~-~~g~~~l~~~~~~~~~~~~ 162 (373)
++.+.+|..+|.++.++ .+|. .-.+.. .+...+.-..|.++ -+|.++.++.++.+| .+---+...+-.|.-+..|
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~-~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVI-LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeee-hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 34566888999999988 6663 222211 11111022344444 578887777788888 3212233334444333333
Q ss_pred ceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE
Q 017317 163 DDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI 212 (373)
Q Consensus 163 ~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~ 212 (373)
++++ +|.||++... |.|+++++++.....
T Consensus 142 ---~i~~g~~sly~a~t~------------------G~vlavt~~~~~~~~ 171 (354)
T KOG4649|consen 142 ---VIAPGDGSLYAAITA------------------GAVLAVTKNPYSSTE 171 (354)
T ss_pred ---eecCCCceEEEEecc------------------ceEEEEccCCCCcce
Confidence 6666 8899999764 889999887765444
No 140
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.82 E-value=0.33 Score=43.16 Aligned_cols=192 Identities=14% Similarity=0.150 Sum_probs=104.7
Q ss_pred cccCeEECCCCc-EEEEE-CCCcEEEEecCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCcccccccccccccc
Q 017317 118 TLLGITTTQENE-ILVCD-ADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLE 193 (373)
Q Consensus 118 p~~gl~~d~~g~-L~va~-~~~gl~~~~~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~ 193 (373)
.. +|.++++.+ ||... ....++.++.+| ++.+.- ..++-+.+|+.-.+|.+-+++..
T Consensus 88 vS-~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL----~g~~DpE~Ieyig~n~fvi~dER-------------- 148 (316)
T COG3204 88 VS-SLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL----TGFSDPETIEYIGGNQFVIVDER-------------- 148 (316)
T ss_pred cc-ceeeCCCcceEEEecCCCceEEEEecCCceEEEecc----cccCChhHeEEecCCEEEEEehh--------------
Confidence 45 899998775 66543 334578888666 443321 12445667777766777676642
Q ss_pred ccCCceEEEEeCCCCeEE-----Eeec----CCCCcceEEEccCCCEEEEEeCCC-CeEEEEEecCCCCcc---------
Q 017317 194 AKPHGKLLKYDPSLNETS-----ILLD----SLFFANGVALSKDEDYLVVCETFK-FRCLKYWLKGESKEQ--------- 254 (373)
Q Consensus 194 ~~~~g~l~~~d~~~~~~~-----~~~~----~~~~~~gi~~~~dg~~l~v~~~~~-~~i~~~~~~~~~~~~--------- 254 (373)
...-.++++|+++.... .-++ ....-.|++++++...+|++-..+ -+|+.+.........
T Consensus 149 -~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~ 227 (316)
T COG3204 149 -DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTAD 227 (316)
T ss_pred -cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccc
Confidence 12223455666533211 1111 123346999999999899887533 345555422111000
Q ss_pred eeEEecCCCCCCCceeECC-CCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEE
Q 017317 255 TEIFVENLPGGPDNIKLAP-DGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRK 333 (373)
Q Consensus 255 ~~~~~~~~~g~p~~i~~d~-dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~ 333 (373)
...+.. -..++.+|+ .|+++|-.... ..+++++.+|+++..
T Consensus 228 ~~~f~~----DvSgl~~~~~~~~LLVLS~ES----------------------------------r~l~Evd~~G~~~~~ 269 (316)
T COG3204 228 RDLFVL----DVSGLEFNAITNSLLVLSDES----------------------------------RRLLEVDLSGEVIEL 269 (316)
T ss_pred cceEee----ccccceecCCCCcEEEEecCC----------------------------------ceEEEEecCCCeeee
Confidence 001111 123455554 45666665544 368999999998776
Q ss_pred EeCCCC---ce--ecceeEEEEe-CCEEEEeeCCCCeEEEe
Q 017317 334 FEDPNG---KV--MSFVTSALEF-DDHLYLGSLNTNFIGKL 368 (373)
Q Consensus 334 ~~~~~g---~~--~~~~~~~~~~-~g~L~vgs~~~~~i~~~ 368 (373)
+.-..| .. .....++.-+ +|.||+-+- .|-.+++
T Consensus 270 lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE-Pnlfy~F 309 (316)
T COG3204 270 LSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE-PNLFYRF 309 (316)
T ss_pred EEeccCCCCCcccCCCcceeEECCCCCEEEEec-CCcceec
Confidence 644333 21 2234455544 589999984 4444444
No 141
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.80 E-value=0.16 Score=50.27 Aligned_cols=141 Identities=13% Similarity=0.191 Sum_probs=79.9
Q ss_pred ccccCeEECCCCcEEEEECCCcEEEEe--cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCcccccccccccccc
Q 017317 117 DTLLGITTTQENEILVCDADKGLLKVT--EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLE 193 (373)
Q Consensus 117 ~p~~gl~~d~~g~L~va~~~~gl~~~~--~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~ 193 (373)
.|+.|..+.|+.++.+.....+-.|+- .+- ..+... | ....+.++.|.|.|..+.+. +
T Consensus 452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~---G-H~~PVwdV~F~P~GyYFata-s-------------- 512 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK---G-HLAPVWDVQFAPRGYYFATA-S-------------- 512 (707)
T ss_pred CceeeeeecccccceeeccCCcceeeeecccceeEEEec---C-CCcceeeEEecCCceEEEec-C--------------
Confidence 344488899998877765443333332 221 111111 2 12245678899887655554 3
Q ss_pred ccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECC
Q 017317 194 AKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP 273 (373)
Q Consensus 194 ~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~ 273 (373)
+..+.+||-.|.. .-.+.++..+..-..+.|+|... ...+.+....+..+|+... ...+.|.. -.+-...+++.+
T Consensus 513 ~D~tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G--~~VRiF~G-H~~~V~al~~Sp 587 (707)
T KOG0263|consen 513 HDQTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTG--NSVRIFTG-HKGPVTALAFSP 587 (707)
T ss_pred CCceeeeeecccC-CchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCC--cEEEEecC-CCCceEEEEEcC
Confidence 2456788888753 33445556666667799999886 3333344444555554322 23555543 223456688999
Q ss_pred CCCEEEEE
Q 017317 274 DGSFWIAI 281 (373)
Q Consensus 274 dG~lwva~ 281 (373)
+|++.+..
T Consensus 588 ~Gr~LaSg 595 (707)
T KOG0263|consen 588 CGRYLASG 595 (707)
T ss_pred CCceEeec
Confidence 98665553
No 142
>PTZ00420 coronin; Provisional
Probab=96.80 E-value=0.18 Score=50.03 Aligned_cols=159 Identities=7% Similarity=-0.039 Sum_probs=82.9
Q ss_pred CcceEEEecCCCE-E-EEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEEC-CCcEEEEe-cCC--cEEE
Q 017317 78 GPEDVCVDRNGVL-Y-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDA-DKGLLKVT-EEG--VTVL 150 (373)
Q Consensus 78 ~P~~ia~d~~G~l-~-v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~-~~gl~~~~-~~g--~~~l 150 (373)
.-.++++.|++.. . +++.++.|..+| ..++............ +++++++|.++++.. .+.+..+| .++ ...+
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~-SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLS-SLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEE-EEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 3467888887653 3 456789999998 4444222112234456 899999999887654 34466777 566 2222
Q ss_pred eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCC-CeEEEeecCCCCcce--EEEcc
Q 017317 151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILLDSLFFANG--VALSK 227 (373)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~~~~~~~~~~g--i~~~~ 227 (373)
..+.............+.+++..+++.+.. ......|..+|..+ ++.......-..+.. ..+++
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d-------------~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~ 272 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFS-------------KNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDE 272 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcC-------------CCCccEEEEEECCCCCCceEEEEecCCccceEEeeeC
Confidence 211111000001111234677766665431 00112466677552 221111111111222 23455
Q ss_pred CCCEEEEEeCCCCeEEEEEecCC
Q 017317 228 DEDYLVVCETFKFRCLKYWLKGE 250 (373)
Q Consensus 228 dg~~l~v~~~~~~~i~~~~~~~~ 250 (373)
+...+|++..+++.|+.|++..+
T Consensus 273 ~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 273 STGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCCCEEEEEECCCeEEEEEccCC
Confidence 54458888888888888887543
No 143
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.79 E-value=0.099 Score=52.25 Aligned_cols=149 Identities=19% Similarity=0.255 Sum_probs=94.8
Q ss_pred cceEEEecCCC-EEEEecCCeEEEEE-cCCce-EEee---eecCccccCeEECCCCcEEEEECCCcEEEEe--cCCc--E
Q 017317 79 PEDVCVDRNGV-LYTATRDGWIKRLH-KNGTW-ENWK---LIGGDTLLGITTTQENEILVCDADKGLLKVT--EEGV--T 148 (373)
Q Consensus 79 P~~ia~d~~G~-l~v~~~~g~I~~~~-~~g~~-~~~~---~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~--~~g~--~ 148 (373)
-.+++++.-|+ .++|.+.|.|-+++ +.|-. ..+. ...+... |++.|.-+++.|+....|++.+. ..+. .
T Consensus 451 ~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~-gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~ 529 (910)
T KOG1539|consen 451 ATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVT-GLAVDGTNRLLVSAGADGILKFWDFKKKVLKK 529 (910)
T ss_pred eEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCcee-EEEecCCCceEEEccCcceEEEEecCCcceee
Confidence 45677887565 45899999999999 55632 2231 1223345 99999888888876667776654 2221 0
Q ss_pred EE----------ee---------------------------ccCCccccccceeEEcCCCcEEEEeCCcccccccccccc
Q 017317 149 VL----------AS---------------------------HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDL 191 (373)
Q Consensus 149 ~l----------~~---------------------------~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~ 191 (373)
.+ .. ...| -.+.++++++.+||+=.++.+
T Consensus 530 ~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g-h~nritd~~FS~DgrWlisas------------- 595 (910)
T KOG1539|consen 530 SLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG-HGNRITDMTFSPDGRWLISAS------------- 595 (910)
T ss_pred eeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc-cccceeeeEeCCCCcEEEEee-------------
Confidence 00 00 0011 124678899999997444432
Q ss_pred ccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 017317 192 LEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYW 246 (373)
Q Consensus 192 ~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~ 246 (373)
..+.|..+|.-++.......--..+..+.++|.|++|..+....++|+.+-
T Consensus 596 ----mD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 596 ----MDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred ----cCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 136777788766654332222334578999999999999998888898774
No 144
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=96.79 E-value=0.47 Score=44.56 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=49.0
Q ss_pred CcceEEEecCCCEE-EEecCCeEEEEEcCCceEEeeeecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC-cEEE
Q 017317 78 GPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG-VTVL 150 (373)
Q Consensus 78 ~P~~ia~d~~G~l~-v~~~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g-~~~l 150 (373)
.-.+++...+|.+. +|..+|.+..++.+|...........|...|.+.++|+..+ +...+.++.+| .+| ....
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 34568888889888 67889988888888864433322334443899998887544 45556678888 667 4433
No 145
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=96.78 E-value=0.059 Score=50.82 Aligned_cols=107 Identities=18% Similarity=0.222 Sum_probs=64.6
Q ss_pred cccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCC--CCeEEE-eecCCCCcceEEEccCCCEEEEE
Q 017317 160 NLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LNETSI-LLDSLFFANGVALSKDEDYLVVC 235 (373)
Q Consensus 160 ~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--~~~~~~-~~~~~~~~~gi~~~~dg~~l~v~ 235 (373)
+++......+||+ |.++.. ...|-.+|.. +.++.. +-........+++++|.+ +.++
T Consensus 466 nyiRSckL~pdgrtLivGGe------------------astlsiWDLAapTprikaeltssapaCyALa~spDak-vcFs 526 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGE------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK-VCFS 526 (705)
T ss_pred cceeeeEecCCCceEEeccc------------------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc-eeee
Confidence 5666777788995 544421 1234444433 222221 111123345788999998 7777
Q ss_pred eCCCCeEEEEEecCCCCcceeEEecCCCCCCCc---eeECCCC-CEEEEEecCCCchhhh
Q 017317 236 ETFKFRCLKYWLKGESKEQTEIFVENLPGGPDN---IKLAPDG-SFWIAILQLSSPGLEF 291 (373)
Q Consensus 236 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~---i~~d~dG-~lwva~~~~~~~~~~~ 291 (373)
....+.|..||+..+. ....+.|++|| |.+..|| +||.+..+.....||.
T Consensus 527 ccsdGnI~vwDLhnq~------~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDl 580 (705)
T KOG0639|consen 527 CCSDGNIAVWDLHNQT------LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDL 580 (705)
T ss_pred eccCCcEEEEEcccce------eeecccCCCCCceeEEecCCCceeecCCCccceeehhh
Confidence 7777789999976542 22245677777 5677889 6999876654445554
No 146
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.75 E-value=0.047 Score=51.08 Aligned_cols=145 Identities=12% Similarity=0.038 Sum_probs=89.8
Q ss_pred cceEEEec-CCCEE-EEecCCeEEEEE--cCCc-eEEeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe-cCC-cEEE
Q 017317 79 PEDVCVDR-NGVLY-TATRDGWIKRLH--KNGT-WENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG-VTVL 150 (373)
Q Consensus 79 P~~ia~d~-~G~l~-v~~~~g~I~~~~--~~g~-~~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~g-~~~l 150 (373)
-.++.+-+ .+.|+ .+..++.|..++ .+++ +++|.. ...|+..+++..+|.-+.+ ....-+-.+| ++| ...-
T Consensus 217 vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-H~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~ 295 (503)
T KOG0282|consen 217 VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-HRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSR 295 (503)
T ss_pred cchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc-chhhhhhhhccccCCeeeeeecceeeeeeccccceEEEE
Confidence 34444444 67777 455788888887 3343 334332 2334338888888965544 4444455566 778 3322
Q ss_pred eeccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE-EeecCCCCcceEEEccC
Q 017317 151 ASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFANGVALSKD 228 (373)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~~~~~~~~gi~~~~d 228 (373)
... ...+..+.+.||+ +++++.++ +++|..+|..++++. .+...+...+.|.|-++
T Consensus 296 f~~-----~~~~~cvkf~pd~~n~fl~G~s-----------------d~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~ 353 (503)
T KOG0282|consen 296 FHL-----DKVPTCVKFHPDNQNIFLVGGS-----------------DKKIRQWDIRSGKVVQEYDRHLGAILDITFVDE 353 (503)
T ss_pred Eec-----CCCceeeecCCCCCcEEEEecC-----------------CCcEEEEeccchHHHHHHHhhhhheeeeEEccC
Confidence 111 1346788889988 78877554 589999998877632 23445667788999998
Q ss_pred CCEEEEEeCCCCeEEEEEe
Q 017317 229 EDYLVVCETFKFRCLKYWL 247 (373)
Q Consensus 229 g~~l~v~~~~~~~i~~~~~ 247 (373)
|+ -+++.+....+..++.
T Consensus 354 g~-rFissSDdks~riWe~ 371 (503)
T KOG0282|consen 354 GR-RFISSSDDKSVRIWEN 371 (503)
T ss_pred Cc-eEeeeccCccEEEEEc
Confidence 87 5666555555555543
No 147
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.71 E-value=0.29 Score=47.91 Aligned_cols=157 Identities=17% Similarity=0.178 Sum_probs=88.4
Q ss_pred CCcceEEEecCCCEE-EEe-cCCeEEEEEcCCceEE--eeeec--CccccCeEECCCCc-EEEEE-CCCcEEEEe-cCC-
Q 017317 77 NGPEDVCVDRNGVLY-TAT-RDGWIKRLHKNGTWEN--WKLIG--GDTLLGITTTQENE-ILVCD-ADKGLLKVT-EEG- 146 (373)
Q Consensus 77 ~~P~~ia~d~~G~l~-v~~-~~g~I~~~~~~g~~~~--~~~~~--~~p~~gl~~d~~g~-L~va~-~~~gl~~~~-~~g- 146 (373)
..-.+-++.|+|++. +++ ..=+|+++.+++.+.. ....+ ..+.+.+.+..|++ ++++. ....+..++ ...
T Consensus 383 ~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps 462 (691)
T KOG2048|consen 383 ENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPS 462 (691)
T ss_pred cceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcc
Confidence 334455677889887 555 5668888886654332 21111 11221444444443 44443 223455555 333
Q ss_pred cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceEEE
Q 017317 147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVAL 225 (373)
Q Consensus 147 ~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~ 225 (373)
.+.+...........+..|++.++|+-..+-+ ..|.|+.|+.++++...+...+..+ ...++
T Consensus 463 ~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~-----------------t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~ 525 (691)
T KOG2048|consen 463 FKELKSIQSQAKCPSISRLVVSSDGNYIAAIS-----------------TRGQIFVYNLETLESHLLKVRLNIDVTAAAF 525 (691)
T ss_pred hhhhhccccccCCCcceeEEEcCCCCEEEEEe-----------------ccceEEEEEcccceeecchhccCcceeeeec
Confidence 33332222223345677899999996443322 2478999999988877665444432 45566
Q ss_pred cc-CCCEEEEEeCCCCeEEEEEecCCC
Q 017317 226 SK-DEDYLVVCETFKFRCLKYWLKGES 251 (373)
Q Consensus 226 ~~-dg~~l~v~~~~~~~i~~~~~~~~~ 251 (373)
.| +.+.+.++ +.++.++.|++...+
T Consensus 526 ~~~~~~~lvva-ts~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 526 SPFVRNRLVVA-TSNNQVFEFDIEARN 551 (691)
T ss_pred cccccCcEEEE-ecCCeEEEEecchhh
Confidence 64 44445555 457899999985443
No 148
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=96.70 E-value=0.46 Score=43.18 Aligned_cols=155 Identities=15% Similarity=0.090 Sum_probs=84.7
Q ss_pred EeccCCcCCcceEEEecCCCEE-EEecCCeEEEEE-cCCceEEeee-ecCccccCeEECCCC-cEEEEECCCcEEEEe-c
Q 017317 70 RLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKL-IGGDTLLGITTTQEN-EILVCDADKGLLKVT-E 144 (373)
Q Consensus 70 ~~~~g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~~~-~~~~p~~gl~~d~~g-~L~va~~~~gl~~~~-~ 144 (373)
++..|-+.--+++++||.+.-+ .|+.++.|-.+| ..|+...... .....- ++++.+.- .||-|..++-+-.+| +
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr-~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVR-GVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheee-eeeecccCceEEEecCCCeeEEEech
Confidence 3444556667899999865544 455777777777 6776543222 123345 77776433 456555445566677 4
Q ss_pred CC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcc-
Q 017317 145 EG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN- 221 (373)
Q Consensus 145 ~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~- 221 (373)
.. ++.+... +..+..++..|.-.+.++.+. ....+|| |..++.......+...|.
T Consensus 224 ~nkvIR~YhGH-----lS~V~~L~lhPTldvl~t~gr---------------Dst~RvW--DiRtr~~V~~l~GH~~~V~ 281 (460)
T KOG0285|consen 224 YNKVIRHYHGH-----LSGVYCLDLHPTLDVLVTGGR---------------DSTIRVW--DIRTRASVHVLSGHTNPVA 281 (460)
T ss_pred hhhhHHHhccc-----cceeEEEeccccceeEEecCC---------------cceEEEe--eecccceEEEecCCCCcce
Confidence 33 3333222 335677888887777777543 1223444 444444333444444443
Q ss_pred eEEEcc-CCCEEEEEeCCCCeEEEEEecC
Q 017317 222 GVALSK-DEDYLVVCETFKFRCLKYWLKG 249 (373)
Q Consensus 222 gi~~~~-dg~~l~v~~~~~~~i~~~~~~~ 249 (373)
.+.+-+ |.+ +++.+.+..|..+|+..
T Consensus 282 ~V~~~~~dpq--vit~S~D~tvrlWDl~a 308 (460)
T KOG0285|consen 282 SVMCQPTDPQ--VITGSHDSTVRLWDLRA 308 (460)
T ss_pred eEEeecCCCc--eEEecCCceEEEeeecc
Confidence 333332 443 44445566777777643
No 149
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.69 E-value=0.061 Score=53.44 Aligned_cols=151 Identities=9% Similarity=0.089 Sum_probs=93.9
Q ss_pred cceEEEec-CCCEE-EEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEE-EEECCCcEEEEe-cCCcEEE---
Q 017317 79 PEDVCVDR-NGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEIL-VCDADKGLLKVT-EEGVTVL--- 150 (373)
Q Consensus 79 P~~ia~d~-~G~l~-v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~-va~~~~gl~~~~-~~g~~~l--- 150 (373)
-.+|++.| |.+.+ .|+-+|+|..|+ ++-++..+.+...... ++++.|||+.- |++. .|..++. ..|.+..
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT-Avcy~PdGk~avIGt~-~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLIT-AVCYSPDGKGAVIGTF-NGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhe-eEEeccCCceEEEEEe-ccEEEEEEccCCeEEEee
Confidence 35588888 55555 678899998888 6666766666555666 99999999754 5554 6666665 4442111
Q ss_pred --ee-ccCCccccccceeEEcCCC--cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc---ce
Q 017317 151 --AS-HVNGSRINLADDLIAATDG--SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA---NG 222 (373)
Q Consensus 151 --~~-~~~~~~~~~~~~l~~~~dG--~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~---~g 222 (373)
.. .........+.++-+.|.. .+.|+... .+|-.||..+.+......+..+. ..
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnD------------------SrIRI~d~~~~~lv~KfKG~~n~~SQ~~ 551 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSND------------------SRIRIYDGRDKDLVHKFKGFRNTSSQIS 551 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCC------------------CceEEEeccchhhhhhhcccccCCccee
Confidence 11 1111122356677666432 58887543 57888887544443334444433 34
Q ss_pred EEEccCCCEEEEEeCCCCeEEEEEecCC
Q 017317 223 VALSKDEDYLVVCETFKFRCLKYWLKGE 250 (373)
Q Consensus 223 i~~~~dg~~l~v~~~~~~~i~~~~~~~~ 250 (373)
-.|+.||++++.+. .++.||.+..+..
T Consensus 552 Asfs~Dgk~IVs~s-eDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 552 ASFSSDGKHIVSAS-EDSWVYIWKNDSF 578 (712)
T ss_pred eeEccCCCEEEEee-cCceEEEEeCCCC
Confidence 67889999766665 7788998886543
No 150
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=96.69 E-value=0.38 Score=42.19 Aligned_cols=189 Identities=14% Similarity=0.137 Sum_probs=109.7
Q ss_pred eEeccCCcCCcceEEEecCCCEE-EEecCCeEEEEE-cCCceE-EeeeecCccccCeEECCCCcEEEE-ECCCcEEEEec
Q 017317 69 TRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVC-DADKGLLKVTE 144 (373)
Q Consensus 69 ~~~~~g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~~ 144 (373)
.+...|--..-+.+++.++|+.. .++.++.+..+| ..|+.+ .+........ ++++++|.+-.|. ...+.+..++-
T Consensus 56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl-sva~s~dn~qivSGSrDkTiklwnt 134 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL-SVAFSTDNRQIVSGSRDKTIKLWNT 134 (315)
T ss_pred eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceE-EEEecCCCceeecCCCcceeeeeee
Confidence 33334432335667788888877 577899888888 445433 3333334567 9999998875554 55556666663
Q ss_pred CC--cEEEeeccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-ecCCCCc
Q 017317 145 EG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFA 220 (373)
Q Consensus 145 ~g--~~~l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~ 220 (373)
-| .-.+.. .+ ....++.+.|.|+- +.++...+ ....|-..|.++-+.... ......-
T Consensus 135 ~g~ck~t~~~--~~-~~~WVscvrfsP~~~~p~Ivs~s----------------~DktvKvWnl~~~~l~~~~~gh~~~v 195 (315)
T KOG0279|consen 135 LGVCKYTIHE--DS-HREWVSCVRFSPNESNPIIVSAS----------------WDKTVKVWNLRNCQLRTTFIGHSGYV 195 (315)
T ss_pred cccEEEEEec--CC-CcCcEEEEEEcCCCCCcEEEEcc----------------CCceEEEEccCCcchhhccccccccE
Confidence 23 222211 11 13567889999884 44444322 234555566655443322 2223345
Q ss_pred ceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEec
Q 017317 221 NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ 283 (373)
Q Consensus 221 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~ 283 (373)
+-++++|||. +..+....+.++.++++..+. ...+ .-......+++.+. ++|++..-
T Consensus 196 ~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~--lysl--~a~~~v~sl~fspn-rywL~~at 252 (315)
T KOG0279|consen 196 NTVTVSPDGS-LCASGGKDGEAMLWDLNEGKN--LYSL--EAFDIVNSLCFSPN-RYWLCAAT 252 (315)
T ss_pred EEEEECCCCC-EEecCCCCceEEEEEccCCce--eEec--cCCCeEeeEEecCC-ceeEeecc
Confidence 7799999998 777766677888888865432 1111 11112455778665 68877543
No 151
>PTZ00420 coronin; Provisional
Probab=96.65 E-value=0.82 Score=45.45 Aligned_cols=150 Identities=13% Similarity=0.006 Sum_probs=85.9
Q ss_pred cCCcceEEEecC-CCE-EEEecCCeEEEEE-cCCc--eE-------EeeeecCccccCeEECCCCcEE-E-EECCCcEEE
Q 017317 76 LNGPEDVCVDRN-GVL-YTATRDGWIKRLH-KNGT--WE-------NWKLIGGDTLLGITTTQENEIL-V-CDADKGLLK 141 (373)
Q Consensus 76 ~~~P~~ia~d~~-G~l-~v~~~~g~I~~~~-~~g~--~~-------~~~~~~~~p~~gl~~d~~g~L~-v-a~~~~gl~~ 141 (373)
-....++++.++ +.+ .+++.++.|..++ +++. .. .+........ .+++++++..+ + +...+.+..
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~-sVaf~P~g~~iLaSgS~DgtIrI 152 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS-IIDWNPMNYYIMCSSGFDSFVNI 152 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE-EEEECCCCCeEEEEEeCCCeEEE
Confidence 344677888874 554 4777899999888 3321 11 1111223455 88999988643 3 344445666
Q ss_pred Ee-cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCC
Q 017317 142 VT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF 219 (373)
Q Consensus 142 ~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~ 219 (373)
+| .++ ...... .. ..+..++++++|.+.++.+. .+.|..+|+.+++......+...
T Consensus 153 WDl~tg~~~~~i~-~~----~~V~SlswspdG~lLat~s~-----------------D~~IrIwD~Rsg~~i~tl~gH~g 210 (568)
T PTZ00420 153 WDIENEKRAFQIN-MP----KKLSSLKWNIKGNLLSGTCV-----------------GKHMHIIDPRKQEIASSFHIHDG 210 (568)
T ss_pred EECCCCcEEEEEe-cC----CcEEEEEECCCCCEEEEEec-----------------CCEEEEEECCCCcEEEEEecccC
Confidence 77 555 221111 11 24678999999998876542 36788899887764432222111
Q ss_pred c-ce-----EEEccCCCEEEEEeCCC---CeEEEEEec
Q 017317 220 A-NG-----VALSKDEDYLVVCETFK---FRCLKYWLK 248 (373)
Q Consensus 220 ~-~g-----i~~~~dg~~l~v~~~~~---~~i~~~~~~ 248 (373)
. .. ..++++++.+..+.... ..|..||+.
T Consensus 211 ~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 211 GKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK 248 (568)
T ss_pred CceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence 1 11 12347877555554333 257777765
No 152
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=96.65 E-value=0.0045 Score=34.39 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=20.8
Q ss_pred cCCcceEEEecCCCEEEEe-cCCeEEEE
Q 017317 76 LNGPEDVCVDRNGVLYTAT-RDGWIKRL 102 (373)
Q Consensus 76 ~~~P~~ia~d~~G~l~v~~-~~g~I~~~ 102 (373)
+..|.+|+++++|+||+++ .+.+|.++
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4579999999999999877 55666654
No 153
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=96.64 E-value=0.028 Score=49.81 Aligned_cols=100 Identities=15% Similarity=0.198 Sum_probs=61.5
Q ss_pred ccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCC---CeEEEeecCCCCcceEEEccCCCEEEEEeC
Q 017317 161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL---NETSILLDSLFFANGVALSKDEDYLVVCET 237 (373)
Q Consensus 161 ~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~---~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~ 237 (373)
.++++.|.|...|.++.+. .+.|-.+|-.. ++...+.........+.|.|.|++|++..
T Consensus 174 evn~l~FHPre~ILiS~sr-----------------D~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT- 235 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSR-----------------DNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT- 235 (430)
T ss_pred cccceeecchhheEEeccC-----------------CCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec-
Confidence 4778999999999988653 34455555321 11112233334456799999999777764
Q ss_pred CCCeEEEEEecCCCCcceeEEecCCC-----CCCCceeECCCCCEEEEEec
Q 017317 238 FKFRCLKYWLKGESKEQTEIFVENLP-----GGPDNIKLAPDGSFWIAILQ 283 (373)
Q Consensus 238 ~~~~i~~~~~~~~~~~~~~~~~~~~~-----g~p~~i~~d~dG~lwva~~~ 283 (373)
....+..||+.. .+.|....| +....+...+.|++|++...
T Consensus 236 dHp~~rlYdv~T-----~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSk 281 (430)
T KOG0640|consen 236 DHPTLRLYDVNT-----YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASK 281 (430)
T ss_pred CCCceeEEeccc-----eeEeeecCcccccccceeEEEecCCccEEEEecc
Confidence 456677788653 334432211 22334567899999998654
No 154
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.64 E-value=0.11 Score=51.41 Aligned_cols=177 Identities=10% Similarity=0.023 Sum_probs=95.6
Q ss_pred EEEecCCCEEEEe-cCCeEEEEEcCCc-eEEeeeecCccccCeEECCCCcEEEEECCCc---EEEEecCC-cEEEeeccC
Q 017317 82 VCVDRNGVLYTAT-RDGWIKRLHKNGT-WENWKLIGGDTLLGITTTQENEILVCDADKG---LLKVTEEG-VTVLASHVN 155 (373)
Q Consensus 82 ia~d~~G~l~v~~-~~g~I~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~L~va~~~~g---l~~~~~~g-~~~l~~~~~ 155 (373)
..+.|+.+..+.+ +++.|..+..+-. -.+.......|+..+.|.|-|.-|+.-.+.+ ++..+... .++++.+
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifagh-- 534 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGH-- 534 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccc--
Confidence 4455666666544 5566655553221 1111123344543556666664444322222 33333222 4444332
Q ss_pred CccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEE
Q 017317 156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVV 234 (373)
Q Consensus 156 ~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~~dg~~l~v 234 (373)
..-+..+.+.|+.+...+.++ .-.+-.+|..+|....+..+...| ..++++|+|++| +
T Consensus 535 ---lsDV~cv~FHPNs~Y~aTGSs-----------------D~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L-a 593 (707)
T KOG0263|consen 535 ---LSDVDCVSFHPNSNYVATGSS-----------------DRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL-A 593 (707)
T ss_pred ---ccccceEEECCcccccccCCC-----------------CceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE-e
Confidence 224567889998776555433 234555566666655555554444 679999999844 3
Q ss_pred EeCCCCeEEEEEecCCC-CcceeEEecCCCCCCCceeECCCCCEEEEEecCC
Q 017317 235 CETFKFRCLKYWLKGES-KEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLS 285 (373)
Q Consensus 235 ~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~ 285 (373)
+....+.|..||+.+.+ ... +... .+....+.+..||++.++.....
T Consensus 594 Sg~ed~~I~iWDl~~~~~v~~---l~~H-t~ti~SlsFS~dg~vLasgg~Dn 641 (707)
T KOG0263|consen 594 SGDEDGLIKIWDLANGSLVKQ---LKGH-TGTIYSLSFSRDGNVLASGGADN 641 (707)
T ss_pred ecccCCcEEEEEcCCCcchhh---hhcc-cCceeEEEEecCCCEEEecCCCC
Confidence 43445667777775432 121 1111 34456688999999998876543
No 155
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=96.59 E-value=0.12 Score=44.54 Aligned_cols=159 Identities=16% Similarity=0.150 Sum_probs=83.3
Q ss_pred ccceeEeccCCcCCcceEEEecCCCEEEEecCCeEEEEE--cCC------ceEEeeee-cCccccCeEECCCCcEEEEEC
Q 017317 65 IQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLH--KNG------TWENWKLI-GGDTLLGITTTQENEILVCDA 135 (373)
Q Consensus 65 l~~~~~~~~g~~~~P~~ia~d~~G~l~v~~~~g~I~~~~--~~g------~~~~~~~~-~~~p~~gl~~d~~g~L~va~~ 135 (373)
..++.++..| ..+=..|+..|+|+||.-.. +.+++.. .++ ..+.+... -++=. .|.+++.|.||..+.
T Consensus 23 ~~~a~~iG~g-w~~~~~i~~~P~g~lY~I~~-~~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~-~i~~d~~G~LYaV~~ 99 (229)
T PF14517_consen 23 SDRAITIGSG-WNNFRDIAAGPNGRLYAIRN-DGLYRGSPSSSGGNTWDSGSKQIGDGGWNSFK-FIFFDPTGVLYAVTP 99 (229)
T ss_dssp HHHSEEEESS--TT-SEEEE-TTS-EEEEET-TEEEEES---STT--HHHH-EEEE-S-GGG-S-EEEE-TTS-EEEEET
T ss_pred cchhhhcCcc-ccccceEEEcCCceEEEEEC-CceEEecCCccCcccccccCcccccCccccee-EEEecCCccEEEecc
Confidence 4566777765 56667889999999996553 4788773 122 11222221 11233 688899999998877
Q ss_pred CCcEEEEe-c-CC-cEE---EeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEE-eCCCC
Q 017317 136 DKGLLKVT-E-EG-VTV---LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY-DPSLN 208 (373)
Q Consensus 136 ~~gl~~~~-~-~g-~~~---l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~-d~~~~ 208 (373)
...+++.. . ++ ... ....+.+...+....|.++++|.||.-+.. |++++. .|...
T Consensus 100 ~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~d------------------g~~~~~~~p~~~ 161 (229)
T PF14517_consen 100 DGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPD------------------GRLYRRYRPDGG 161 (229)
T ss_dssp T-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETT------------------E-EEEE---SST
T ss_pred ccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcCC------------------CceEEeCCCCCC
Confidence 66677876 2 22 211 112221223344567888999999988753 678877 44332
Q ss_pred eE------EEe-ecCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 017317 209 ET------SIL-LDSLFFANGVALSKDEDYLVVCETFKFRCLKYW 246 (373)
Q Consensus 209 ~~------~~~-~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~ 246 (373)
.- ..+ ..+-..+.-|.+++++. ||.++ .+..|+|+.
T Consensus 162 ~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V~-~~G~lyr~~ 204 (229)
T PF14517_consen 162 SDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAVK-SNGKLYRGR 204 (229)
T ss_dssp T--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE--ETTEEEEES
T ss_pred CCccccccceeccCCcccceEEeeCCCCc-EEEEe-cCCEEeccC
Confidence 21 111 12233466788889987 88774 456788775
No 156
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.55 E-value=0.43 Score=40.94 Aligned_cols=172 Identities=13% Similarity=0.152 Sum_probs=91.3
Q ss_pred eEEEecCCCEEEEecCCeEEEEE-c-CCc-eEEeeeecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC--cEEEeec
Q 017317 81 DVCVDRNGVLYTATRDGWIKRLH-K-NGT-WENWKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG--VTVLASH 153 (373)
Q Consensus 81 ~ia~d~~G~l~v~~~~g~I~~~~-~-~g~-~~~~~~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g--~~~l~~~ 153 (373)
.+-+.-+|+.-+...+.+.+++. + .|. .+++...+.... .++...|+.-+. +...+-+..+| .+| .+.+..+
T Consensus 22 avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVl-D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH 100 (307)
T KOG0316|consen 22 AVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVL-DAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGH 100 (307)
T ss_pred EEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceee-eccccccccccccCCCCceEEEEEcccCeeeeecccc
Confidence 34455678877666555555554 3 343 334433333344 555544554333 33345577788 777 3333221
Q ss_pred cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe---ecCCCCcceEEEccCCC
Q 017317 154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL---LDSLFFANGVALSKDED 230 (373)
Q Consensus 154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~---~~~~~~~~gi~~~~dg~ 230 (373)
...+|.+.+..+-.+.++.+- ...+..+|=....++.+ .+.......|.+. +
T Consensus 101 -----~aqVNtV~fNeesSVv~Sgsf-----------------D~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~ 155 (307)
T KOG0316|consen 101 -----LAQVNTVRFNEESSVVASGSF-----------------DSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---E 155 (307)
T ss_pred -----cceeeEEEecCcceEEEeccc-----------------cceeEEEEcccCCCCccchhhhhcCceeEEEec---c
Confidence 235788999888888887542 23444444333333322 1111222233332 3
Q ss_pred EEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCC-CCceeECCCCCEEE-EEecC
Q 017317 231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGG-PDNIKLAPDGSFWI-AILQL 284 (373)
Q Consensus 231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~-p~~i~~d~dG~lwv-a~~~~ 284 (373)
+.+++.+..+++..|++.-.+. ..+ .-|. ...+.+.+||+.-+ +..++
T Consensus 156 heIvaGS~DGtvRtydiR~G~l-----~sD-y~g~pit~vs~s~d~nc~La~~l~s 205 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTL-----SSD-YFGHPITSVSFSKDGNCSLASSLDS 205 (307)
T ss_pred cEEEeeccCCcEEEEEeeccee-----ehh-hcCCcceeEEecCCCCEEEEeeccc
Confidence 5888888888999999753221 111 1233 35688999998544 44443
No 157
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=96.52 E-value=0.16 Score=45.28 Aligned_cols=151 Identities=15% Similarity=0.206 Sum_probs=82.6
Q ss_pred CCcCCcceEEEecCCCEE-EEecCCeEEEEE-cCCceEE---------eeeecCccccCeEECCCCcEEEEECCCcEEE-
Q 017317 74 GILNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWEN---------WKLIGGDTLLGITTTQENEILVCDADKGLLK- 141 (373)
Q Consensus 74 g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~---------~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~- 141 (373)
|.-..+|+..+.|||... .|+-+|-|-+++ .+|+.+. +........ .|.|..|.+........|-++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVl-ci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVL-CISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceE-EEeecccHHHhhccCcCCcEEE
Confidence 445779999999998877 566889888887 5665432 111122334 666666665544433333222
Q ss_pred Ee-cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEe-CCCCeE-EEeecC
Q 017317 142 VT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYD-PSLNET-SILLDS 216 (373)
Q Consensus 142 ~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d-~~~~~~-~~~~~~ 216 (373)
+. .+| ++.+- . ....++..+.+..|+.-..+.+. ....|+. .+.|+. ..+...
T Consensus 290 Wri~tG~ClRrFd-r---AHtkGvt~l~FSrD~SqiLS~sf------------------D~tvRiHGlKSGK~LKEfrGH 347 (508)
T KOG0275|consen 290 WRIETGQCLRRFD-R---AHTKGVTCLSFSRDNSQILSASF------------------DQTVRIHGLKSGKCLKEFRGH 347 (508)
T ss_pred EEEecchHHHHhh-h---hhccCeeEEEEccCcchhhcccc------------------cceEEEeccccchhHHHhcCc
Confidence 22 445 33221 1 11234667888888765454332 1233332 222322 122233
Q ss_pred CCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 017317 217 LFFANGVALSKDEDYLVVCETFKFRCLKYWLK 248 (373)
Q Consensus 217 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 248 (373)
-.+.|...|++||.+++-+. .++.+..++.+
T Consensus 348 sSyvn~a~ft~dG~~iisaS-sDgtvkvW~~K 378 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIISAS-SDGTVKVWHGK 378 (508)
T ss_pred cccccceEEcCCCCeEEEec-CCccEEEecCc
Confidence 34567888999998666554 45667666643
No 158
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.14 Score=43.04 Aligned_cols=102 Identities=18% Similarity=0.332 Sum_probs=64.0
Q ss_pred CccccCeEECCCCcEEEEECCCcEEEEecCC---cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccc
Q 017317 116 GDTLLGITTTQENEILVCDADKGLLKVTEEG---VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLL 192 (373)
Q Consensus 116 ~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g---~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~ 192 (373)
+.-. ||+-|. .+||.++...-+...|+.. ...+.-..+|.+....|.+..= ||.+|.-...
T Consensus 131 GeGW-gLt~d~-~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~------------- 194 (262)
T COG3823 131 GEGW-GLTSDD-KNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQ------------- 194 (262)
T ss_pred Ccce-eeecCC-cceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeee-------------
Confidence 4456 777763 3688887655555555322 2222223456666666665432 6766654432
Q ss_pred cccCCceEEEEeCCCCeEEEeec-------------CCCCcceEEEccCCCEEEEEeC
Q 017317 193 EAKPHGKLLKYDPSLNETSILLD-------------SLFFANGVALSKDEDYLVVCET 237 (373)
Q Consensus 193 ~~~~~g~l~~~d~~~~~~~~~~~-------------~~~~~~gi~~~~dg~~l~v~~~ 237 (373)
+-+|.|++|++|++....+ .....||||.+++++.+|++.-
T Consensus 195 ----t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 195 ----TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ----ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 2479999999998765321 1335799999999988998853
No 159
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.48 E-value=0.67 Score=43.74 Aligned_cols=63 Identities=21% Similarity=0.419 Sum_probs=35.1
Q ss_pred cceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcce--eEEec--------------CCCCCCCceeECCCC-CEEEEEe
Q 017317 220 ANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQT--EIFVE--------------NLPGGPDNIKLAPDG-SFWIAIL 282 (373)
Q Consensus 220 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~--~~~~~--------------~~~g~p~~i~~d~dG-~lwva~~ 282 (373)
+..|.+|.|.++|||++...+.+..||++.+..-+. +++.. .+.|.|.-+.++-|| ++|+++.
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 356889999999999999999999999987642221 12221 123456667889999 5898864
No 160
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.44 E-value=0.72 Score=42.75 Aligned_cols=233 Identities=14% Similarity=0.141 Sum_probs=123.8
Q ss_pred ceEEEecCCCEE-EEecCC--eEEEEEcCCceEEeeee--cCccccCeEECCCCcEEE-EECCCcEEEEe-cCC-cEEEe
Q 017317 80 EDVCVDRNGVLY-TATRDG--WIKRLHKNGTWENWKLI--GGDTLLGITTTQENEILV-CDADKGLLKVT-EEG-VTVLA 151 (373)
Q Consensus 80 ~~ia~d~~G~l~-v~~~~g--~I~~~~~~g~~~~~~~~--~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g-~~~l~ 151 (373)
+.+.+..+|.-. .++.+- .|+.+..+++++..... ...|+..|++.||.+-.+ |....-+..+| .+| .....
T Consensus 228 Wfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y 307 (519)
T KOG0293|consen 228 WFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY 307 (519)
T ss_pred EEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc
Confidence 445666666655 333332 33444466664433222 233443788999987544 44334466677 677 43332
Q ss_pred eccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCC--CcceEEEccCC
Q 017317 152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF--FANGVALSKDE 229 (373)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~--~~~gi~~~~dg 229 (373)
.. +. ...+...+.-|||.=+|+.+ +.+.++.+|.++.... -..+.. .-..+++++||
T Consensus 308 ~~--~~-~~S~~sc~W~pDg~~~V~Gs-----------------~dr~i~~wdlDgn~~~-~W~gvr~~~v~dlait~Dg 366 (519)
T KOG0293|consen 308 PS--GL-GFSVSSCAWCPDGFRFVTGS-----------------PDRTIIMWDLDGNILG-NWEGVRDPKVHDLAITYDG 366 (519)
T ss_pred cc--Cc-CCCcceeEEccCCceeEecC-----------------CCCcEEEecCCcchhh-cccccccceeEEEEEcCCC
Confidence 21 11 13456678888986556543 3467888887754322 122222 34578999999
Q ss_pred CEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCC-chhhhccCChHHHHHHHhcc--
Q 017317 230 DYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSS-PGLEFVHTSKATKHLLAAFP-- 306 (373)
Q Consensus 230 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~-~~~~~~~~~p~~~~~~~~~~-- 306 (373)
++++.... ..+|..|+...... .. ..+ ...-.-.+.++.||++.+....... .+|++- .....|+....-.
T Consensus 367 k~vl~v~~-d~~i~l~~~e~~~d--r~-lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~-e~~lv~kY~Ghkq~~ 440 (519)
T KOG0293|consen 367 KYVLLVTV-DKKIRLYNREARVD--RG-LIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLE-ENKLVRKYFGHKQGH 440 (519)
T ss_pred cEEEEEec-ccceeeechhhhhh--hc-ccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecc-hhhHHHHhhcccccc
Confidence 98888764 45677776433210 00 111 1122345788899988777655432 344443 3232333222111
Q ss_pred ----hhh-----hhccCCCccEEEEEEC-CCCcEEEEEeCCCC
Q 017317 307 ----KLI-----KLVAPLHKKAAVVNVA-ANGIVIRKFEDPNG 339 (373)
Q Consensus 307 ----~~~-----~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g 339 (373)
+.. ...+++.+.+-|+..+ ..|+++..++...+
T Consensus 441 fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~ 483 (519)
T KOG0293|consen 441 FIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK 483 (519)
T ss_pred eEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc
Confidence 110 1123456666666666 56777777765543
No 161
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.43 E-value=0.43 Score=47.23 Aligned_cols=182 Identities=13% Similarity=0.066 Sum_probs=89.9
Q ss_pred EEEecCCCEE-EEecCCeEEEEE-cCCceEEeeee-cCccccCeEECCCCcE---EEEECCCcEEEEe-cCCcEEEeecc
Q 017317 82 VCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLI-GGDTLLGITTTQENEI---LVCDADKGLLKVT-EEGVTVLASHV 154 (373)
Q Consensus 82 ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~~~~-~~~p~~gl~~d~~g~L---~va~~~~gl~~~~-~~g~~~l~~~~ 154 (373)
+++++.|.+. +|..+|.+.++| ..+.-+..... ++... .+.|.++-+. +.+.....+..+| .++...+.. .
T Consensus 111 ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVs-sl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~-~ 188 (775)
T KOG0319|consen 111 MAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVS-SLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHT-M 188 (775)
T ss_pred EEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEE-EEEeCCccchhheeecCCCceEEEEEcccCchHHHH-H
Confidence 7889977776 677899999999 44444433333 44555 8888876654 3344334456666 433111100 0
Q ss_pred CCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccC---CCE
Q 017317 155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD---EDY 231 (373)
Q Consensus 155 ~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~d---g~~ 231 (373)
. .....+.+|++.+|+.-.++.+. .--++.+|..+-+......-...-.++.+-++ ++.
T Consensus 189 ~-~H~S~vtsL~~~~d~~~~ls~~R-----------------Dkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~ 250 (775)
T KOG0319|consen 189 I-LHKSAVTSLAFSEDSLELLSVGR-----------------DKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKG 250 (775)
T ss_pred H-hhhhheeeeeeccCCceEEEecc-----------------CcEEEEeehhhhhhhheechhhheeeEEEechhcCCcc
Confidence 0 11234678888888865555432 22455666543332222333333445555444 222
Q ss_pred EEEEeCCCCeEEEEE-ecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317 232 LVVCETFKFRCLKYW-LKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL 284 (373)
Q Consensus 232 l~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~ 284 (373)
.|+...+..++.+++ ..+.+........+ .+.....+..-..+.+.+.+...
T Consensus 251 ~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQ 303 (775)
T KOG0319|consen 251 EYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQ 303 (775)
T ss_pred eEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccc
Confidence 333333455566665 33332222111111 11122334444555666666543
No 162
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.37 E-value=1.1 Score=43.91 Aligned_cols=147 Identities=7% Similarity=0.036 Sum_probs=82.6
Q ss_pred cceEEEec-CCCEEEEecCCeEEEEEcCCce---EEeeee-cCccccCeEECCCCcEEEEECCCcEEEEe-cCCcEEEee
Q 017317 79 PEDVCVDR-NGVLYTATRDGWIKRLHKNGTW---ENWKLI-GGDTLLGITTTQENEILVCDADKGLLKVT-EEGVTVLAS 152 (373)
Q Consensus 79 P~~ia~d~-~G~l~v~~~~g~I~~~~~~g~~---~~~~~~-~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g~~~l~~ 152 (373)
-.++|+.. ++.|-++-.+|.|=.++....+ ..+... ....- +|++.+.|+|+-....+.|..+| .++.+....
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE-~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~ 106 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIE-SLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNI 106 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCcee-eEEEccCCeEEeecCCceEEEEecccCceeEEe
Confidence 34566665 5555577778877777632221 122222 23345 99998888999887766788888 566222222
Q ss_pred ccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE--eecCC-CCcceEEEccC
Q 017317 153 HVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI--LLDSL-FFANGVALSKD 228 (373)
Q Consensus 153 ~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~--~~~~~-~~~~gi~~~~d 228 (373)
...+ ..+..+++.|.+. +-|+.. .|.++.++...++.+. .+... ...-.+.|.++
T Consensus 107 d~~g---g~IWsiai~p~~~~l~Igcd------------------dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~ 165 (691)
T KOG2048|consen 107 DSNG---GAIWSIAINPENTILAIGCD------------------DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPT 165 (691)
T ss_pred cCCC---cceeEEEeCCccceEEeecC------------------CceEEEEecCCceEEEEeecccccceEEEEEecCC
Confidence 2222 2456777777663 455532 2556666655444432 11111 22335777888
Q ss_pred CCEEEEEeCCCCeEEEEEec
Q 017317 229 EDYLVVCETFKFRCLKYWLK 248 (373)
Q Consensus 229 g~~l~v~~~~~~~i~~~~~~ 248 (373)
+. -+++.+.++.|..+|..
T Consensus 166 ~~-~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 166 GT-KIAGGSIDGVIRIWDVK 184 (691)
T ss_pred cc-EEEecccCceEEEEEcC
Confidence 76 35555566667777754
No 163
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=96.35 E-value=0.85 Score=43.49 Aligned_cols=184 Identities=15% Similarity=0.146 Sum_probs=95.4
Q ss_pred cceEEEecCC-CEEEEecCCeEEEEEcCCce-EEee----------eecCccc--cCeEECCCC--cEEEEECCCcEEEE
Q 017317 79 PEDVCVDRNG-VLYTATRDGWIKRLHKNGTW-ENWK----------LIGGDTL--LGITTTQEN--EILVCDADKGLLKV 142 (373)
Q Consensus 79 P~~ia~d~~G-~l~v~~~~g~I~~~~~~g~~-~~~~----------~~~~~p~--~gl~~d~~g--~L~va~~~~gl~~~ 142 (373)
-.++.+.+.| .|.+.+.......+|.+|.. ..+. .+.|... ..-++.|+. .+.-|.....+..+
T Consensus 217 i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiW 296 (641)
T KOG0772|consen 217 INSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIW 296 (641)
T ss_pred cceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEE
Confidence 4456666644 44455555566677777632 1111 1112222 022455544 34444443434444
Q ss_pred e-c-CC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE--EEee--
Q 017317 143 T-E-EG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET--SILL-- 214 (373)
Q Consensus 143 ~-~-~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~--~~~~-- 214 (373)
+ . .. .+++.+...+..--.+..-++++||.++.+.- ..|.|..++..+..+ ....
T Consensus 297 dv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc-----------------~DGSIQ~W~~~~~~v~p~~~vk~ 359 (641)
T KOG0772|consen 297 DVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGC-----------------LDGSIQIWDKGSRTVRPVMKVKD 359 (641)
T ss_pred ecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcc-----------------cCCceeeeecCCcccccceEeee
Confidence 4 2 22 56665554443333456678999998844321 246666666421111 1111
Q ss_pred --cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCC-CC-CceeECCCCCEEEEEe
Q 017317 215 --DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPG-GP-DNIKLAPDGSFWIAIL 282 (373)
Q Consensus 215 --~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g-~p-~~i~~d~dG~lwva~~ 282 (373)
........|+|+.||+ .+.+-...+.+..+++...+.- ..++. .++. +| .+.+++++..|.++..
T Consensus 360 AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq~kkp-L~~~t-gL~t~~~~tdc~FSPd~kli~TGt 428 (641)
T KOG0772|consen 360 AHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQFKKP-LNVRT-GLPTPFPGTDCCFSPDDKLILTGT 428 (641)
T ss_pred ccCCCCceeEEEeccccc-hhhhccCCCceeeeeccccccc-hhhhc-CCCccCCCCccccCCCceEEEecc
Confidence 1223456899999998 6666667778888887643211 11111 2221 22 3477889988777643
No 164
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=96.35 E-value=0.086 Score=46.99 Aligned_cols=106 Identities=16% Similarity=0.297 Sum_probs=59.9
Q ss_pred CeEECCCCc-EEEEECCCcEEEEe--cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCcccccccccccccccc
Q 017317 121 GITTTQENE-ILVCDADKGLLKVT--EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAK 195 (373)
Q Consensus 121 gl~~d~~g~-L~va~~~~gl~~~~--~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~ 195 (373)
.+.|.+|+. +.-+.. ....|+. ++| .+.+ .| ...++|...+.+||+-.++.++
T Consensus 311 ~l~FSrD~SqiLS~sf-D~tvRiHGlKSGK~LKEf----rG-HsSyvn~a~ft~dG~~iisaSs---------------- 368 (508)
T KOG0275|consen 311 CLSFSRDNSQILSASF-DQTVRIHGLKSGKCLKEF----RG-HSSYVNEATFTDDGHHIISASS---------------- 368 (508)
T ss_pred EEEEccCcchhhcccc-cceEEEeccccchhHHHh----cC-ccccccceEEcCCCCeEEEecC----------------
Confidence 677877774 444433 3456665 455 2222 12 1246888899999987777654
Q ss_pred CCceEEEEeCCCCeEEEeecC---CCCcceEEEcc-CCCEEEEEeCCCCeEEEEEecCC
Q 017317 196 PHGKLLKYDPSLNETSILLDS---LFFANGVALSK-DEDYLVVCETFKFRCLKYWLKGE 250 (373)
Q Consensus 196 ~~g~l~~~d~~~~~~~~~~~~---~~~~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~~~ 250 (373)
.|.|-.++.++.+....... -...|.+.+-| .-.++.|++. .+.++..++.|+
T Consensus 369 -DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr-sntv~imn~qGQ 425 (508)
T KOG0275|consen 369 -DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR-SNTVYIMNMQGQ 425 (508)
T ss_pred -CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC-CCeEEEEeccce
Confidence 36666666555443211111 11224444444 3456777764 567888888775
No 165
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.32 E-value=0.55 Score=43.98 Aligned_cols=208 Identities=13% Similarity=0.089 Sum_probs=109.9
Q ss_pred cCccccCeEECCCCcEEEEE-CCCcEEEEe-cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccc
Q 017317 115 GGDTLLGITTTQENEILVCD-ADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLD 190 (373)
Q Consensus 115 ~~~p~~gl~~d~~g~L~va~-~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~ 190 (373)
++... .++.++.|.+.++. -...||.+. .+| +..+..+ ...+..|.+..||..+|+.+.
T Consensus 81 Pg~v~-al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH-----YQ~ITcL~fs~dgs~iiTgsk----------- 143 (476)
T KOG0646|consen 81 PGPVH-ALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAH-----YQSITCLKFSDDGSHIITGSK----------- 143 (476)
T ss_pred cccee-eeecCCCceEEEeecccCcEEEEEeccccHHHHHHhh-----ccceeEEEEeCCCcEEEecCC-----------
Confidence 44455 88888999877775 445688887 777 3333211 234678889999999998654
Q ss_pred cccccCCceEEEEeC------CCC-eEEE--eecCCC-CcceEEEccC--CCEEEEEeCCCCeEEEEEecCCCCcceeEE
Q 017317 191 LLEAKPHGKLLKYDP------SLN-ETSI--LLDSLF-FANGVALSKD--EDYLVVCETFKFRCLKYWLKGESKEQTEIF 258 (373)
Q Consensus 191 ~~~~~~~g~l~~~d~------~~~-~~~~--~~~~~~-~~~gi~~~~d--g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~ 258 (373)
.|.|+.+.. +.. .+.. ...... .-..+.++.. ...+|-+ +.++.+..|++.....-.. +
T Consensus 144 ------Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta-S~D~t~k~wdlS~g~LLlt--i 214 (476)
T KOG0646|consen 144 ------DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA-SEDRTIKLWDLSLGVLLLT--I 214 (476)
T ss_pred ------CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe-cCCceEEEEEeccceeeEE--E
Confidence 355554431 110 0000 000000 0112222222 1224433 4556777788765432111 1
Q ss_pred ecCCCCCCCceeECCCC-CEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCC
Q 017317 259 VENLPGGPDNIKLAPDG-SFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDP 337 (373)
Q Consensus 259 ~~~~~g~p~~i~~d~dG-~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~ 337 (373)
..|..+..+++|+.+ ++|+++..+......+....+.-+.+ ..-.++.++..+..+...
T Consensus 215 --~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v------------------~~k~~~~~~t~~~~~~Gh 274 (476)
T KOG0646|consen 215 --TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGV------------------NQKGRHEENTQINVLVGH 274 (476)
T ss_pred --ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccc------------------cccccccccceeeeeccc
Confidence 234557788999877 48999877632222221111100000 012234566677776554
Q ss_pred CCceecceeEEEEe-CCEEEEeeCCCCeEEEeeC
Q 017317 338 NGKVMSFVTSALEF-DDHLYLGSLNTNFIGKLPL 370 (373)
Q Consensus 338 ~g~~~~~~~~~~~~-~g~L~vgs~~~~~i~~~~l 370 (373)
.+. ..++.+... +|.|.+.+-....+..-++
T Consensus 275 ~~~--~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 275 ENE--SAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred cCC--cceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 432 357777665 7887777776666766554
No 166
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.29 E-value=1.3 Score=43.80 Aligned_cols=161 Identities=14% Similarity=0.070 Sum_probs=82.3
Q ss_pred EEEecCCCEEEEecCCeEEEEE-cCCceEEeeeecC-----ccccCeEECCCCcEEEEEC------CCcEEEEe-cCC-c
Q 017317 82 VCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGG-----DTLLGITTTQENEILVCDA------DKGLLKVT-EEG-V 147 (373)
Q Consensus 82 ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~-----~p~~gl~~d~~g~L~va~~------~~gl~~~~-~~g-~ 147 (373)
+++. ++++|+++.+++++.+| .+|+..-...... .......+ .+|.+|++.. ...|+.+| ++| .
T Consensus 116 ~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 116 VALY-DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV-VKGKVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred ceEE-CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEE-ECCEEEEeecccccCCCcEEEEEECCCCce
Confidence 4554 68999999999999999 5776432211110 01101222 2567888743 23577888 677 3
Q ss_pred EEEeeccCCc--------------c--------------ccccceeEEcCC-CcEEEEeCCccccccccccccc--cccC
Q 017317 148 TVLASHVNGS--------------R--------------INLADDLIAATD-GSIYFSVASTKFGLHNWGLDLL--EAKP 196 (373)
Q Consensus 148 ~~l~~~~~~~--------------~--------------~~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~--~~~~ 196 (373)
..-....+.. + ...-..+++|++ |.||+.++.- .. +..... ....
T Consensus 194 lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp---~p-~~~~~r~gdnl~ 269 (527)
T TIGR03075 194 VWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNP---SP-WNSHLRPGDNLY 269 (527)
T ss_pred eEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCC---CC-CCCCCCCCCCcc
Confidence 3221111100 0 011124688875 6789987541 00 111111 1122
Q ss_pred CceEEEEeCCCCeEEEeecC-------C---CCcceEEEccCCC--EEEEEeCCCCeEEEEEec
Q 017317 197 HGKLLKYDPSLNETSILLDS-------L---FFANGVALSKDED--YLVVCETFKFRCLKYWLK 248 (373)
Q Consensus 197 ~g~l~~~d~~~~~~~~~~~~-------~---~~~~gi~~~~dg~--~l~v~~~~~~~i~~~~~~ 248 (373)
...|+.+|.+||+....... . ..|.-+.+..+|+ .+++.-+.++.++.+|..
T Consensus 270 ~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~ 333 (527)
T TIGR03075 270 TSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRT 333 (527)
T ss_pred ceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECC
Confidence 45799999999987653321 1 1222233334554 344444455566666643
No 167
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=96.29 E-value=0.046 Score=39.72 Aligned_cols=85 Identities=12% Similarity=0.099 Sum_probs=54.1
Q ss_pred CceeECCC-CCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecce
Q 017317 267 DNIKLAPD-GSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFV 345 (373)
Q Consensus 267 ~~i~~d~d-G~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~ 345 (373)
+++.++++ |.+|++....+-.. .-+...++. ..+.|.+++|||..+....+-+ | ...+
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~------~~~~~~~le-----------~~~~GRll~ydp~t~~~~vl~~--~--L~fp 59 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDR------RDWVYDLLE-----------GRPTGRLLRYDPSTKETTVLLD--G--LYFP 59 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--T------TGHHHHHHH-----------T---EEEEEEETTTTEEEEEEE--E--ESSE
T ss_pred CceeEecCCCEEEEEeCccccCc------cceeeeeec-----------CCCCcCEEEEECCCCeEEEehh--C--CCcc
Confidence 46788888 99999988754221 222333444 6778999999999888777653 3 3456
Q ss_pred eEEEEeC--CEEEEeeCCCCeEEEeeCCC
Q 017317 346 TSALEFD--DHLYLGSLNTNFIGKLPLKA 372 (373)
Q Consensus 346 ~~~~~~~--g~L~vgs~~~~~i~~~~l~~ 372 (373)
.++..+. ..|.++.-...+|.|+=|.+
T Consensus 60 NGVals~d~~~vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 60 NGVALSPDESFVLVAETGRYRILRYWLKG 88 (89)
T ss_dssp EEEEE-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred CeEEEcCCCCEEEEEeccCceEEEEEEeC
Confidence 7776653 47999999999999998765
No 168
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=96.27 E-value=0.03 Score=48.11 Aligned_cols=124 Identities=22% Similarity=0.275 Sum_probs=64.9
Q ss_pred ccceeEeccCCcCCcceEEEecCCCEEEEecCCeEEEEEc--CCc-------eEEe-eeecCccccCeEECCCCcEEEEE
Q 017317 65 IQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHK--NGT-------WENW-KLIGGDTLLGITTTQENEILVCD 134 (373)
Q Consensus 65 l~~~~~~~~g~~~~P~~ia~d~~G~l~v~~~~g~I~~~~~--~g~-------~~~~-~~~~~~p~~gl~~d~~g~L~va~ 134 (373)
+...+++..+....=..|++|+.|.||.-+.+|.+++... ++. .+.+ ...-.... .+.++++|.||+.+
T Consensus 69 ~~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~-~vfa~~~GvLY~i~ 147 (229)
T PF14517_consen 69 DSGSKQIGDGGWNSFKFIFFDPTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFD-AVFAGPNGVLYAIT 147 (229)
T ss_dssp HHH-EEEE-S-GGG-SEEEE-TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEE-EEEE-TTS-EEEEE
T ss_pred cccCcccccCcccceeEEEecCCccEEEeccccceeeccCCCccCcchhhccceecccCCCccce-EEEeCCCccEEEEc
Confidence 3566777777444445899999999997788899988872 221 1222 11122334 67788999999988
Q ss_pred CCCcEEEEe-cCC--cEEEe--eccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCC
Q 017317 135 ADKGLLKVT-EEG--VTVLA--SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL 207 (373)
Q Consensus 135 ~~~gl~~~~-~~g--~~~l~--~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~ 207 (373)
....+++.. +++ -+.+. ....+........|.+.++|+||..++ +|.|||+.+.+
T Consensus 148 ~dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~~------------------~G~lyr~~~p~ 207 (229)
T PF14517_consen 148 PDGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVKS------------------NGKLYRGRPPQ 207 (229)
T ss_dssp TTE-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-E------------------TTEEEEES---
T ss_pred CCCceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCcEEEEec------------------CCEEeccCCcc
Confidence 654477764 322 11110 111122223355678899999998854 48999987654
No 169
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.19 E-value=1.1 Score=41.84 Aligned_cols=163 Identities=15% Similarity=0.210 Sum_probs=77.2
Q ss_pred ecCC-CEEE-Eec--CCeEEEEE-cCCceEEeeeecCc-cccCeEECCCC-cEEEEECCCcEEEEe-cCC-cEEEeeccC
Q 017317 85 DRNG-VLYT-ATR--DGWIKRLH-KNGTWENWKLIGGD-TLLGITTTQEN-EILVCDADKGLLKVT-EEG-VTVLASHVN 155 (373)
Q Consensus 85 d~~G-~l~v-~~~--~g~I~~~~-~~g~~~~~~~~~~~-p~~gl~~d~~g-~L~va~~~~gl~~~~-~~g-~~~l~~~~~ 155 (373)
.++| +|++ +.. ...++.+| .+++.+.+.+..+. .. |..+.+++ .+|..-....|.+++ .+. .+.+....+
T Consensus 44 t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~ 122 (386)
T PF14583_consen 44 TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPD 122 (386)
T ss_dssp -TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--T
T ss_pred CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCc
Confidence 3455 3443 443 34678888 66777666554333 34 66666555 454333346799999 666 555554333
Q ss_pred CccccccceeEEcCCCcEEEEeCCcc--cc-cc--ccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCC-
Q 017317 156 GSRINLADDLIAATDGSIYFSVASTK--FG-LH--NWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE- 229 (373)
Q Consensus 156 ~~~~~~~~~l~~~~dG~l~v~~~~~~--~~-~~--~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg- 229 (373)
+.. .-.....+.|++.+++....+ +. +. ....+..+..+..+|+++|.++|+.+++...-..-+-+.++|..
T Consensus 123 ~~~--g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 123 DWK--GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDP 200 (386)
T ss_dssp TEE--EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEE
T ss_pred ccc--cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCC
Confidence 211 111233466888877643221 10 11 12345666777889999999999988876654444555555532
Q ss_pred CEEEEEeCC-----CCeEEEEEecCC
Q 017317 230 DYLVVCETF-----KFRCLKYWLKGE 250 (373)
Q Consensus 230 ~~l~v~~~~-----~~~i~~~~~~~~ 250 (373)
..+.+|..+ ..||+.++.+|.
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~ 226 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGS 226 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred CEEEEeccCCcceeceEEEEEEcCCC
Confidence 233344433 236666665544
No 170
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=96.07 E-value=0.19 Score=46.38 Aligned_cols=106 Identities=12% Similarity=0.108 Sum_probs=63.8
Q ss_pred CeEECCCCcEEEEECCCcEE-EEe-cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCC
Q 017317 121 GITTTQENEILVCDADKGLL-KVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH 197 (373)
Q Consensus 121 gl~~d~~g~L~va~~~~gl~-~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~ 197 (373)
++++.+||.|.....-..+- .+| .+| ...+.. | ....+.+++++|+|....+.++ ...
T Consensus 308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~---g-H~k~I~~V~fsPNGy~lATgs~---------------Dnt 368 (459)
T KOG0272|consen 308 SIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA---G-HIKEILSVAFSPNGYHLATGSS---------------DNT 368 (459)
T ss_pred eeEecCCCceeeccCccchhheeecccCcEEEEec---c-cccceeeEeECCCceEEeecCC---------------CCc
Confidence 89999999997653222232 345 677 333222 1 2235779999999988877654 233
Q ss_pred ceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 017317 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYW 246 (373)
Q Consensus 198 g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~ 246 (373)
-+||.+..... .-.+...-.....+.++|+...++++...++.+..+.
T Consensus 369 ~kVWDLR~r~~-ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 369 CKVWDLRMRSE-LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWS 416 (459)
T ss_pred EEEeeeccccc-ceecccccchhhheEecccCCeEEEEcccCcceeeec
Confidence 46666654322 2122222233467889997666888877777665554
No 171
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.99 E-value=2.5 Score=44.24 Aligned_cols=176 Identities=10% Similarity=0.061 Sum_probs=93.0
Q ss_pred ceEEEec-CC-CEEEEecCCeEEEEE-cCCce-EEeeeecCccccCeEECC-CCcEEEE-ECCCcEEEEe-cCC--cEEE
Q 017317 80 EDVCVDR-NG-VLYTATRDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQ-ENEILVC-DADKGLLKVT-EEG--VTVL 150 (373)
Q Consensus 80 ~~ia~d~-~G-~l~v~~~~g~I~~~~-~~g~~-~~~~~~~~~p~~gl~~d~-~g~L~va-~~~~gl~~~~-~~g--~~~l 150 (373)
.++++.+ ++ .|.+++.+|.|..++ ..++. ..+....+... ++++++ ++.++++ ...+.+..++ .++ ...+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~-~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW-SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE-EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 4566655 33 455677889999998 34432 22322234456 888985 6666554 4334466666 555 3332
Q ss_pred eeccCCccccccceeEEc-CCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE--EEeecCCCCcceEEEcc
Q 017317 151 ASHVNGSRINLADDLIAA-TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET--SILLDSLFFANGVALSK 227 (373)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~-~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~--~~~~~~~~~~~gi~~~~ 227 (373)
.. ...+..+.+. ++|.+.++.+ ..+.|..+|..+.+. ..+.........+.|.
T Consensus 615 ~~------~~~v~~v~~~~~~g~~latgs-----------------~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~- 670 (793)
T PLN00181 615 KT------KANICCVQFPSESGRSLAFGS-----------------ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV- 670 (793)
T ss_pred ec------CCCeEEEEEeCCCCCEEEEEe-----------------CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-
Confidence 11 1134566664 4676665543 247888898765432 1221111223456675
Q ss_pred CCCEEEEEeCCCCeEEEEEecCCCC----cceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317 228 DEDYLVVCETFKFRCLKYWLKGESK----EQTEIFVENLPGGPDNIKLAPDGSFWIAIL 282 (373)
Q Consensus 228 dg~~l~v~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~g~p~~i~~d~dG~lwva~~ 282 (373)
+++ .+++...++.|..|++..... .....+. ........++++++|.+.++..
T Consensus 671 ~~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs 727 (793)
T PLN00181 671 DSS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGS 727 (793)
T ss_pred CCC-EEEEEECCCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEe
Confidence 666 445555667788887642211 1112221 1122345577888887655543
No 172
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=95.96 E-value=0.56 Score=44.45 Aligned_cols=83 Identities=11% Similarity=0.158 Sum_probs=53.3
Q ss_pred CceEEEEeCCCCeEEEee-cC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCC
Q 017317 197 HGKLLKYDPSLNETSILL-DS-LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD 274 (373)
Q Consensus 197 ~g~l~~~d~~~~~~~~~~-~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~d 274 (373)
.|.|-.+|..+.....-+ .. -....||+|+|....|+|+-..+.+|+.||...++....-.+... -..+++.++
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P----lstvaf~~~ 261 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP----LSTVAFSEC 261 (673)
T ss_pred CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCC----cceeeecCC
Confidence 577777776533222111 11 123479999999998999988899999999765444333333211 145788899
Q ss_pred CCEEEEEec
Q 017317 275 GSFWIAILQ 283 (373)
Q Consensus 275 G~lwva~~~ 283 (373)
|.+.++...
T Consensus 262 G~~L~aG~s 270 (673)
T KOG4378|consen 262 GTYLCAGNS 270 (673)
T ss_pred ceEEEeecC
Confidence 987776543
No 173
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=95.96 E-value=0.4 Score=42.82 Aligned_cols=71 Identities=13% Similarity=0.078 Sum_probs=48.4
Q ss_pred cceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEEEeCCCC
Q 017317 162 ADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVCETFKF 240 (373)
Q Consensus 162 ~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~~~ 240 (373)
.+.+.|.+-|.+.... -.+|+|..||-.|-...........| ..++||+||+ .+++.+...
T Consensus 26 a~~~~Fs~~G~~lAvG-----------------c~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr-~LltsS~D~ 87 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVG-----------------CANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGR-KLLTSSRDW 87 (405)
T ss_pred cceEEeccCcceeeee-----------------ccCCcEEEEEccccchhhhhhccccceeEEEecCCCC-EeeeecCCc
Confidence 5567788888654332 13589999998876654444443333 6899999999 555666677
Q ss_pred eEEEEEecCC
Q 017317 241 RCLKYWLKGE 250 (373)
Q Consensus 241 ~i~~~~~~~~ 250 (373)
.+..+|+..+
T Consensus 88 si~lwDl~~g 97 (405)
T KOG1273|consen 88 SIKLWDLLKG 97 (405)
T ss_pred eeEEEeccCC
Confidence 8888887543
No 174
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.95 E-value=1.6 Score=41.51 Aligned_cols=59 Identities=20% Similarity=0.252 Sum_probs=32.1
Q ss_pred eEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317 222 GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL 284 (373)
Q Consensus 222 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~ 284 (373)
++..++||+.+.+... +.+++-+-.|... .+...........++..+.+|.+|++...+
T Consensus 243 ~v~~~~dG~~~~vg~~--G~~~~s~d~G~~~--W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G 301 (398)
T PLN00033 243 TVNRSPDGDYVAVSSR--GNFYLTWEPGQPY--WQPHNRASARRIQNMGWRADGGLWLLTRGG 301 (398)
T ss_pred eEEEcCCCCEEEEECC--ccEEEecCCCCcc--eEEecCCCccceeeeeEcCCCCEEEEeCCc
Confidence 4566788874444433 2465544333211 111111223344567778999999998765
No 175
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=95.85 E-value=1.2 Score=39.55 Aligned_cols=162 Identities=16% Similarity=0.228 Sum_probs=87.6
Q ss_pred eEEEecCCCEEE-EecCCeEEEEEcCCceEEee---eecCccccCeEECCCCc-EEEEECCCcEEEEe-cCC--cEEEee
Q 017317 81 DVCVDRNGVLYT-ATRDGWIKRLHKNGTWENWK---LIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG--VTVLAS 152 (373)
Q Consensus 81 ~ia~d~~G~l~v-~~~~g~I~~~~~~g~~~~~~---~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g--~~~l~~ 152 (373)
.+.++|+|..++ |..+-.|+.++..|.-+.+. ...+... ++.+.+|++ |+-|...+.+..+| ++| ......
T Consensus 52 ~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM-~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~ 130 (338)
T KOG0265|consen 52 TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVM-ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKG 130 (338)
T ss_pred EEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeE-eeeeccCCCEEEEecCCceEEEEecccceeeehhcc
Confidence 356778898884 45777888887555443332 2234566 888888886 45556667899999 777 222211
Q ss_pred ccCCccccccceeEEc-----------CCCcEEEEeCCcc---------ccccc-----cccccccccCCceEEEEeCCC
Q 017317 153 HVNGSRINLADDLIAA-----------TDGSIYFSVASTK---------FGLHN-----WGLDLLEAKPHGKLLKYDPSL 207 (373)
Q Consensus 153 ~~~~~~~~~~~~l~~~-----------~dG~l~v~~~~~~---------~~~~~-----~~~~~~~~~~~g~l~~~d~~~ 207 (373)
. ...+|.+... .||.+=+=|...+ |.+.. ...++..+.-++.|-.+|+..
T Consensus 131 h-----~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~ 205 (338)
T KOG0265|consen 131 H-----TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRK 205 (338)
T ss_pred c-----cceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeecccc
Confidence 1 0122222222 2343322222211 11111 011222222234445556654
Q ss_pred CeEEEeecCCCC-cceEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317 208 NETSILLDSLFF-ANGVALSKDEDYLVVCETFKFRCLKYWLKG 249 (373)
Q Consensus 208 ~~~~~~~~~~~~-~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~ 249 (373)
+.......+... ..++.++++|. ...++...+.+.++++..
T Consensus 206 ~d~~~~lsGh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 206 NDGLYTLSGHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred CcceEEeecccCceeeEEeccCCC-ccccccccceEEEEEecc
Confidence 444444444333 36899999998 566777778888888653
No 176
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=95.74 E-value=1.3 Score=40.37 Aligned_cols=104 Identities=18% Similarity=0.219 Sum_probs=64.9
Q ss_pred ccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEeC
Q 017317 159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVCET 237 (373)
Q Consensus 159 ~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~ 237 (373)
...+..|...+||..|++.+. ....+...|++++....+. .++....-+.|+||++.++.+..
T Consensus 195 h~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~ 258 (445)
T KOG2139|consen 195 HNPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC 258 (445)
T ss_pred CceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc
Confidence 356678888999999998653 3456888888888766554 33444455789999997776643
Q ss_pred CCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEe
Q 017317 238 FKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAIL 282 (373)
Q Consensus 238 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~ 282 (373)
.++.+.+...+ .-+.+.+. -.+|+.-.-+-+++|+ |.++..
T Consensus 259 --davfrlw~e~q-~wt~erw~-lgsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 259 --DAVFRLWQENQ-SWTKERWI-LGSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred --cceeeeehhcc-cceeccee-ccCCceeeeeecCCCCEEEEEEc
Confidence 35666663221 12223333 2344555566788885 444444
No 177
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=95.68 E-value=0.62 Score=44.38 Aligned_cols=189 Identities=10% Similarity=0.110 Sum_probs=98.8
Q ss_pred CcceEEEecCC-CEEEEecCCeEEEEEcCC---c---eEEeeeecCccccCeEECCCCcE-EEEECCCcEEEEecCCcEE
Q 017317 78 GPEDVCVDRNG-VLYTATRDGWIKRLHKNG---T---WENWKLIGGDTLLGITTTQENEI-LVCDADKGLLKVTEEGVTV 149 (373)
Q Consensus 78 ~P~~ia~d~~G-~l~v~~~~g~I~~~~~~g---~---~~~~~~~~~~p~~gl~~d~~g~L-~va~~~~gl~~~~~~g~~~ 149 (373)
.-..+++|+.| +++.|+.+..|..||-.| . ++.+......+..++.+.+.|.- .|.....-...+|.+|.++
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~ 248 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEI 248 (641)
T ss_pred EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCcee
Confidence 34568899866 566888888898888433 2 22222222233227888877764 4444333344455777222
Q ss_pred E--eecc------CCcc--ccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-
Q 017317 150 L--ASHV------NGSR--INLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL- 217 (373)
Q Consensus 150 l--~~~~------~~~~--~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~- 217 (373)
. .... .... ...+++-.+.|+. ..+++.+. .++-+||-++....+.+++....
T Consensus 249 ~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~---------------DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 249 VEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY---------------DGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred eeeeccchhhhhhhccCCceeeeeccccccCcccceEEecC---------------CCcEEEEecCCchhheeEEeeccC
Confidence 1 1100 0000 0122333455544 34555432 23346776665444555544322
Q ss_pred ---C-CcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEec-CCC-CCCCceeECCCCCEEEEEe
Q 017317 218 ---F-FANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE-NLP-GGPDNIKLAPDGSFWIAIL 282 (373)
Q Consensus 218 ---~-~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~-g~p~~i~~d~dG~lwva~~ 282 (373)
. .+..-+|++||+ ++.+...++.|..++.........-.+.+ ..+ .-...+.++.||++.++-.
T Consensus 314 ~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG 383 (641)
T ss_pred CCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence 2 245568999998 57666777777776643222111111111 122 1356788999999877643
No 178
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.67 E-value=2.1 Score=41.01 Aligned_cols=129 Identities=17% Similarity=0.080 Sum_probs=68.5
Q ss_pred EEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEE-ECC--CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCC
Q 017317 99 IKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDG 171 (373)
Q Consensus 99 I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va-~~~--~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG 171 (373)
++.++ ..|+...+....+.-. ...+.+||+ |.++ +.. ..|+.+| ..+ ...+.. ..+. .. .=.+.|||
T Consensus 220 i~~~~l~~g~~~~i~~~~g~~~-~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~-~~gi--~~--~Ps~spdG 293 (425)
T COG0823 220 IYYLDLNTGKRPVILNFNGNNG-APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTN-GFGI--NT--SPSWSPDG 293 (425)
T ss_pred EEEEeccCCccceeeccCCccC-CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceeccc-CCcc--cc--CccCCCCC
Confidence 55555 2333333333233333 556778885 3333 222 3477777 333 333321 1111 00 22567899
Q ss_pred -cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCe--EEEEEec
Q 017317 172 -SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFR--CLKYWLK 248 (373)
Q Consensus 172 -~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~--i~~~~~~ 248 (373)
.|+|+... .+.-.||++|.++++.+.+-.......--.++|||+.+.+.....+. |..+++.
T Consensus 294 ~~ivf~Sdr---------------~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 294 SKIVFTSDR---------------GGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred CEEEEEeCC---------------CCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence 46665432 12237999999988877665444444466789999977777633333 5555543
No 179
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.62 E-value=0.99 Score=41.35 Aligned_cols=99 Identities=20% Similarity=0.199 Sum_probs=56.7
Q ss_pred CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCe---------
Q 017317 171 GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFR--------- 241 (373)
Q Consensus 171 G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~--------- 241 (373)
.++||.|.... ...++++.+|.+++++.-..+....++ +++++|++.+|++++.-.|
T Consensus 3 ~rvyV~D~~~~-------------~~~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDv 68 (342)
T PF06433_consen 3 HRVYVQDPVFF-------------HMTSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDV 68 (342)
T ss_dssp TEEEEEE-GGG-------------GSSEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEE
T ss_pred cEEEEECCccc-------------cccceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeE
Confidence 37888876411 123699999999888765444444455 7789999999999874322
Q ss_pred EEEEEecCCCCcceeEEecCC-----CCCCCceeECCCCC-EEEEEecC
Q 017317 242 CLKYWLKGESKEQTEIFVENL-----PGGPDNIKLAPDGS-FWIAILQL 284 (373)
Q Consensus 242 i~~~~~~~~~~~~~~~~~~~~-----~g~p~~i~~d~dG~-lwva~~~~ 284 (373)
|..||...- ....++.+... -.++..+++..||+ +||....+
T Consensus 69 v~~~D~~TL-~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP 116 (342)
T PF06433_consen 69 VEIWDTQTL-SPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP 116 (342)
T ss_dssp EEEEETTTT-EEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS
T ss_pred EEEEecCcC-cccceEecCCcchheecccccceEEccCCcEEEEEccCC
Confidence 334553321 11223333221 12466788888886 67766544
No 180
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=95.55 E-value=0.14 Score=45.46 Aligned_cols=145 Identities=14% Similarity=0.214 Sum_probs=78.8
Q ss_pred eEEEecCCCEE-EEecCCeEEEEEcCC-----ceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEec-CCcEEEeec
Q 017317 81 DVCVDRNGVLY-TATRDGWIKRLHKNG-----TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTE-EGVTVLASH 153 (373)
Q Consensus 81 ~ia~d~~G~l~-v~~~~g~I~~~~~~g-----~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~-~g~~~l~~~ 153 (373)
.+.+.|...|. .++.++.|..+|-.. .++.+ ....... +|.++|.|+...+...+-+.++.. +-.+-+...
T Consensus 177 ~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vr-siSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 177 DLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVR-SISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA 254 (430)
T ss_pred ceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceee-eEeecCCCceEEEecCCCceeEEeccceeEeeec
Confidence 35556644555 455677777776111 11222 1223345 899999998554433444544432 122333332
Q ss_pred cC-CccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe---ecCCCCcceEEEccCC
Q 017317 154 VN-GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL---LDSLFFANGVALSKDE 229 (373)
Q Consensus 154 ~~-~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~---~~~~~~~~gi~~~~dg 229 (373)
.+ ......++.+...+.|+||++.+. .|.|-.+|.-.++.... +.+........|..+|
T Consensus 255 nPd~qht~ai~~V~Ys~t~~lYvTaSk-----------------DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ 317 (430)
T KOG0640|consen 255 NPDDQHTGAITQVRYSSTGSLYVTASK-----------------DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNG 317 (430)
T ss_pred CcccccccceeEEEecCCccEEEEecc-----------------CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCC
Confidence 22 222345778888999999999764 47777777665543221 2233334456688888
Q ss_pred CEEEEEeCCCCeEEEEE
Q 017317 230 DYLVVCETFKFRCLKYW 246 (373)
Q Consensus 230 ~~l~v~~~~~~~i~~~~ 246 (373)
++++ .++...+.++|
T Consensus 318 kyiL--sSG~DS~vkLW 332 (430)
T KOG0640|consen 318 KYIL--SSGKDSTVKLW 332 (430)
T ss_pred eEEe--ecCCcceeeee
Confidence 7443 33445555544
No 181
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.55 E-value=2.6 Score=42.06 Aligned_cols=175 Identities=10% Similarity=0.083 Sum_probs=100.3
Q ss_pred EEEecCCCEEEEecCCeEEEEE-cCCceE-Eeee--ecCccccCeEECCCCcEEEEECCCcEEEEe--cCC--cEEEeec
Q 017317 82 VCVDRNGVLYTATRDGWIKRLH-KNGTWE-NWKL--IGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLASH 153 (373)
Q Consensus 82 ia~d~~G~l~v~~~~g~I~~~~-~~g~~~-~~~~--~~~~p~~gl~~d~~g~L~va~~~~gl~~~~--~~g--~~~l~~~ 153 (373)
++++++|...+..-+.+|..++ .+++.. .... ...... .+++++|++..+.-....+.++- +.| ++.....
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~it-a~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~ 103 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEIT-ALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAI 103 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhh-eeeecCCccEEEEeeccceEEEEEcccchHhHhHhhc
Confidence 8999999887766667888888 666553 1111 122345 78888888644433334555544 566 3332211
Q ss_pred cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCE-
Q 017317 154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDY- 231 (373)
Q Consensus 154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~~dg~~- 231 (373)
-. ..+..++++|.|.+.-+ .+ ..+.+-.+|-+.+..+..+.+...+ ..+.|.|+-+.
T Consensus 104 He----~Pvi~ma~~~~g~LlAt-gg----------------aD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~ 162 (775)
T KOG0319|consen 104 HE----APVITMAFDPTGTLLAT-GG----------------ADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRW 162 (775)
T ss_pred cC----CCeEEEEEcCCCceEEe-cc----------------ccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchh
Confidence 01 12356899999855444 32 3467777777777777666664443 56777777543
Q ss_pred EEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEE
Q 017317 232 LVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280 (373)
Q Consensus 232 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva 280 (373)
++++...+..+..|++..... -..... .-..-..++++.+|++-.++
T Consensus 163 lL~sg~~D~~v~vwnl~~~~t-cl~~~~-~H~S~vtsL~~~~d~~~~ls 209 (775)
T KOG0319|consen 163 LLASGATDGTVRVWNLNDKRT-CLHTMI-LHKSAVTSLAFSEDSLELLS 209 (775)
T ss_pred heeecCCCceEEEEEcccCch-HHHHHH-hhhhheeeeeeccCCceEEE
Confidence 445556677888888764322 000000 00112445777777754444
No 182
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=95.54 E-value=0.17 Score=48.80 Aligned_cols=72 Identities=21% Similarity=0.167 Sum_probs=42.2
Q ss_pred ccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC--CCCcceEEEccCCCEEEEEe
Q 017317 159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSKDEDYLVVCE 236 (373)
Q Consensus 159 ~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~~gi~~~~dg~~l~v~~ 236 (373)
+..|..|++|+.|+||+.+....-....... +...+..=+++++++...... ...-.|.+|+||++.++|.-
T Consensus 499 f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~------G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~v 572 (616)
T COG3211 499 FNSPDNLAFDPWGRLWIQTDGSGSTLRNRFR------GVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNV 572 (616)
T ss_pred ccCCCceEECCCCCEEEEecCCCCccCcccc------cccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEe
Confidence 4458899999999999986542110111000 011222334555555544433 23457899999999998873
No 183
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.46 E-value=1.3 Score=41.11 Aligned_cols=140 Identities=13% Similarity=0.109 Sum_probs=80.3
Q ss_pred CeEECCCCcEEEE-ECC--CcEEEEecCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccC
Q 017317 121 GITTTQENEILVC-DAD--KGLLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP 196 (373)
Q Consensus 121 gl~~d~~g~L~va-~~~--~gl~~~~~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~ 196 (373)
-+.+.++|+-... +.. ..++.+..++ ++...+ ..|. ...+.-|.+.||.+-.++.+-
T Consensus 229 fl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~t-lvgh-~~~V~yi~wSPDdryLlaCg~----------------- 289 (519)
T KOG0293|consen 229 FLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKT-LVGH-SQPVSYIMWSPDDRYLLACGF----------------- 289 (519)
T ss_pred EEEEcCCCeeEeeccCCceEEEEEEecCcceeeeee-eecc-cCceEEEEECCCCCeEEecCc-----------------
Confidence 4556666653332 211 2334443444 443322 2221 124567889999988888653
Q ss_pred CceEEEEeCCCCeEEEeec-C-CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCC
Q 017317 197 HGKLLKYDPSLNETSILLD-S-LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD 274 (373)
Q Consensus 197 ~g~l~~~d~~~~~~~~~~~-~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~d 274 (373)
...+...|.+++....... + ...+...+|.|||.. +|+.+.+..++.++++|...+..+... .+ ....+++..|
T Consensus 290 ~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gvr--~~-~v~dlait~D 365 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGVR--DP-KVHDLAITYD 365 (519)
T ss_pred hHheeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcchhhcccccc--cc-eeEEEEEcCC
Confidence 2347778887776554332 2 234567889999985 666666778999998886544333221 11 2456888889
Q ss_pred CCE-EEEEec
Q 017317 275 GSF-WIAILQ 283 (373)
Q Consensus 275 G~l-wva~~~ 283 (373)
|.. +..+..
T Consensus 366 gk~vl~v~~d 375 (519)
T KOG0293|consen 366 GKYVLLVTVD 375 (519)
T ss_pred CcEEEEEecc
Confidence 964 444433
No 184
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.46 E-value=1.3 Score=41.32 Aligned_cols=142 Identities=15% Similarity=0.084 Sum_probs=69.9
Q ss_pred EEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-CCcceEEEccCCCEEEEEeCCCCeEE
Q 017317 166 IAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVALSKDEDYLVVCETFKFRCL 243 (373)
Q Consensus 166 ~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~~~gi~~~~dg~~l~v~~~~~~~i~ 243 (373)
++.+|| +|.|+... .....+|.+|.++++.+++-.+- ....|..++++.+.+|.... ...|.
T Consensus 42 ~ft~dG~kllF~s~~---------------dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~-~~~l~ 105 (386)
T PF14583_consen 42 CFTDDGRKLLFASDF---------------DGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN-GRSLR 105 (386)
T ss_dssp -B-TTS-EEEEEE-T---------------TSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET-TTEEE
T ss_pred CcCCCCCEEEEEecc---------------CCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC-CCeEE
Confidence 557788 56664321 23457999999999988875542 33447888888888866543 35799
Q ss_pred EEEecCCCCcceeEEecCCCCCC--CceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEE
Q 017317 244 KYWLKGESKEQTEIFVENLPGGP--DNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAV 321 (373)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~g~p--~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v 321 (373)
++++++.+. ..++. ...+.- .....++|++.+++....+. ....+.+....++++. ..++..+
T Consensus 106 ~vdL~T~e~--~~vy~-~p~~~~g~gt~v~n~d~t~~~g~e~~~~-d~~~l~~~~~f~e~~~-----------a~p~~~i 170 (386)
T PF14583_consen 106 RVDLDTLEE--RVVYE-VPDDWKGYGTWVANSDCTKLVGIEISRE-DWKPLTKWKGFREFYE-----------ARPHCRI 170 (386)
T ss_dssp EEETTT--E--EEEEE---TTEEEEEEEEE-TTSSEEEEEEEEGG-G-----SHHHHHHHHH-----------C---EEE
T ss_pred EEECCcCcE--EEEEE-CCcccccccceeeCCCccEEEEEEEeeh-hccCccccHHHHHHHh-----------hCCCceE
Confidence 999876432 22332 111111 12335788998888754321 1111223344555555 3444567
Q ss_pred EEECC-CCcEEEEEeCCC
Q 017317 322 VNVAA-NGIVIRKFEDPN 338 (373)
Q Consensus 322 ~~~~~-~g~~~~~~~~~~ 338 (373)
+.++. .|+....+.+..
T Consensus 171 ~~idl~tG~~~~v~~~~~ 188 (386)
T PF14583_consen 171 FTIDLKTGERKVVFEDTD 188 (386)
T ss_dssp EEEETTT--EEEEEEESS
T ss_pred EEEECCCCceeEEEecCc
Confidence 88884 466555554433
No 185
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.46 E-value=1.9 Score=40.30 Aligned_cols=145 Identities=16% Similarity=0.187 Sum_probs=73.2
Q ss_pred cCCCEEEEe-cCCeEEEEEcCCceEEeeeecCccc-----cCeEECCCCc---EEEE-ECC---C--cEEEEe-cCC-cE
Q 017317 86 RNGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTL-----LGITTTQENE---ILVC-DAD---K--GLLKVT-EEG-VT 148 (373)
Q Consensus 86 ~~G~l~v~~-~~g~I~~~~~~g~~~~~~~~~~~p~-----~gl~~d~~g~---L~va-~~~---~--gl~~~~-~~g-~~ 148 (373)
|...+++++ .+++++.++.+|+...... .++++ .++.+ .|+ |-++ +.. . .+++++ .+| ++
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~-~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQSLP-VGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEEE--SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEeec-CCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 345566665 6788999998887544332 34443 13333 232 3344 332 2 266777 456 55
Q ss_pred EEeeccC--CccccccceeEE--cC-CCcEEEEeCCccccccccccccccccCCceE--EEEe-CCCCeEE----EeecC
Q 017317 149 VLASHVN--GSRINLADDLIA--AT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKL--LKYD-PSLNETS----ILLDS 216 (373)
Q Consensus 149 ~l~~~~~--~~~~~~~~~l~~--~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l--~~~d-~~~~~~~----~~~~~ 216 (373)
.+..... ......+.+++. ++ +|.+|+-... ..|.+ |++. ...+.+. .-+..
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~----------------k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG----------------KDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE----------------TTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEec----------------CCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 5432110 112234566665 43 5777665322 12433 3333 2333321 11233
Q ss_pred CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC
Q 017317 217 LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE 250 (373)
Q Consensus 217 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~ 250 (373)
...+.|.+.+.....||+++.. .+|++|+.+..
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~ 239 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEED-VGIWRYDAEPE 239 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEETT-TEEEEEESSCC
T ss_pred CCcceEEEEecccCCEEEecCc-cEEEEEecCCC
Confidence 4578999999988899999965 69999997643
No 186
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.44 E-value=3.3 Score=41.60 Aligned_cols=224 Identities=11% Similarity=0.051 Sum_probs=110.5
Q ss_pred CEEEEecCCeEEEEEcCCceEEeeee---cCccccCeEECCCCcE--EEEE-------CCCcEEEEecCC-cEEEeeccC
Q 017317 89 VLYTATRDGWIKRLHKNGTWENWKLI---GGDTLLGITTTQENEI--LVCD-------ADKGLLKVTEEG-VTVLASHVN 155 (373)
Q Consensus 89 ~l~v~~~~g~I~~~~~~g~~~~~~~~---~~~p~~gl~~d~~g~L--~va~-------~~~gl~~~~~~g-~~~l~~~~~ 155 (373)
.+|+- .+|.+.+++.+ ..+..... ...+. ..++.++|+. |+.. ....|+..+..+ .+.+..
T Consensus 322 ~~~~v-~~G~l~~~~~~-~~~pv~g~~g~~~~vs-spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~--- 395 (591)
T PRK13616 322 GLHAL-VDGSLVSVDGQ-GVTPVPGAFGQMGNIT-SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE--- 395 (591)
T ss_pred cceEE-ECCeEEEecCC-CeeeCCCccccccCcc-cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec---
Confidence 45532 36777777532 23222211 12344 6778888864 3331 112344444333 333322
Q ss_pred CccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEE
Q 017317 156 GSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVV 234 (373)
Q Consensus 156 ~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v 234 (373)
+. ....-.+++|| .||+....... .-+......+.++.++.+++.... ........+.+++||.++.+
T Consensus 396 g~---~~t~PsWspDG~~lw~v~dg~~~------~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~ 464 (591)
T PRK13616 396 GH---SLTRPSWSLDADAVWVVVDGNTV------VRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAM 464 (591)
T ss_pred CC---CCCCceECCCCCceEEEecCcce------EEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEE
Confidence 11 12344788995 68887422000 000111234567766665554432 11224678999999998888
Q ss_pred EeCCCCeEEEEEe---cCCC--CcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhh
Q 017317 235 CETFKFRCLKYWL---KGES--KEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLI 309 (373)
Q Consensus 235 ~~~~~~~i~~~~~---~~~~--~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 309 (373)
.-. .+|+.--+ .+.. ..........+...+..+.--.++.|.+++.++.
T Consensus 465 i~~--g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~------------------------ 518 (591)
T PRK13616 465 IIG--GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPE------------------------ 518 (591)
T ss_pred EEC--CEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCC------------------------
Confidence 763 46665222 2211 1111112222222245566667788887765431
Q ss_pred hhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEe
Q 017317 310 KLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKL 368 (373)
Q Consensus 310 ~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~ 368 (373)
..+..++.+|.....+ +.+.....+..+....+.||+.+-++ +..+
T Consensus 519 ---------~~v~~v~vDG~~~~~~--~~~n~~~~v~~vaa~~~~iyv~~~~g--~~~l 564 (591)
T PRK13616 519 ---------HPVWYVNLDGSNSDAL--PSRNLSAPVVAVAASPSTVYVTDARA--VLQL 564 (591)
T ss_pred ---------CceEEEecCCcccccc--CCCCccCceEEEecCCceEEEEcCCc--eEEe
Confidence 1256667777664432 22222334555555556888887554 4444
No 187
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.42 E-value=1.1 Score=42.06 Aligned_cols=200 Identities=13% Similarity=0.191 Sum_probs=103.6
Q ss_pred ceEEEecCCCEEE-EecCCeEEEEE-cCCc-eEEeeeecCccccCeEEC-CCCcEEEEECCCcEEEEe-c-CC-cEEEee
Q 017317 80 EDVCVDRNGVLYT-ATRDGWIKRLH-KNGT-WENWKLIGGDTLLGITTT-QENEILVCDADKGLLKVT-E-EG-VTVLAS 152 (373)
Q Consensus 80 ~~ia~d~~G~l~v-~~~~g~I~~~~-~~g~-~~~~~~~~~~p~~gl~~d-~~g~L~va~~~~gl~~~~-~-~g-~~~l~~ 152 (373)
-++|+.+||+.++ |..+..|..++ .+.+ +..+....+... +++|- ...+||.+....++-.++ + -. ++.+..
T Consensus 206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~-~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyG 284 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVS-SLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYG 284 (479)
T ss_pred EEEEEcCCCcEEEecCCCceEEEecCcccchhhccccccccee-eeeeecCccceeeeecCCceEEEehhHhHHHHHHhC
Confidence 3588889998874 44556666777 3332 333444455666 88885 233799987766665555 2 22 333222
Q ss_pred ccCCc----cccccceeEEc-CCC--cEEEEeCCcc--cc-----ccc----cccccccccCCceEEEEeCCCCeEE---
Q 017317 153 HVNGS----RINLADDLIAA-TDG--SIYFSVASTK--FG-----LHN----WGLDLLEAKPHGKLLKYDPSLNETS--- 211 (373)
Q Consensus 153 ~~~~~----~~~~~~~l~~~-~dG--~l~v~~~~~~--~~-----~~~----~~~~~~~~~~~g~l~~~d~~~~~~~--- 211 (373)
+..+. .+..-..+++. .|. ++|=-..... |. +.+ ...+...+..+|.|+.++...++.-
T Consensus 285 Hqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 285 HQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred CccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEe
Confidence 11110 00000112222 222 2331110000 10 111 0123456677888888887655432
Q ss_pred EeecC-------CC---CcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEec-CCCCCCCceeECCCCC-EEE
Q 017317 212 ILLDS-------LF---FANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE-NLPGGPDNIKLAPDGS-FWI 279 (373)
Q Consensus 212 ~~~~~-------~~---~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~dG~-lwv 279 (373)
..+++ .. +.++++..+-.+ |+.+.++++.| |+|.-.+.......+.. .+.|+.+.+++..+|. ||+
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~v-rLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~iva 442 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCV-RLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVA 442 (479)
T ss_pred eccccccCCccccccccceeeeEecccCc-eEEecCCCCce-EEEEecCCccccceeeecccccEEEEEEEccCCCEEEE
Confidence 12221 11 446788888777 77777766544 44433333333333321 3568889999999997 777
Q ss_pred EEe
Q 017317 280 AIL 282 (373)
Q Consensus 280 a~~ 282 (373)
+..
T Consensus 443 giG 445 (479)
T KOG0299|consen 443 GIG 445 (479)
T ss_pred ecc
Confidence 754
No 188
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=95.41 E-value=0.25 Score=45.21 Aligned_cols=134 Identities=13% Similarity=0.052 Sum_probs=78.3
Q ss_pred CCEEEEecCCeEEEEEcCCce---EEeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe-cCC--cEEEeeccCCcccc
Q 017317 88 GVLYTATRDGWIKRLHKNGTW---ENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG--VTVLASHVNGSRIN 160 (373)
Q Consensus 88 G~l~v~~~~g~I~~~~~~g~~---~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~g--~~~l~~~~~~~~~~ 160 (373)
-+|..|+.++.++.+++.... +.......-.+ .+.|.||++..+. ...+.+-.++ .+| +..+..+ ..
T Consensus 337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn-~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH-----v~ 410 (480)
T KOG0271|consen 337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVN-HVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH-----VA 410 (480)
T ss_pred ceeEEecCCceEEEecccccccchhhhhchhhhee-eEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc-----cc
Confidence 356677788888888743211 11111122345 7889998765443 4445666677 666 3333211 12
Q ss_pred ccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCCcceEEEccCCCEEEEEeCCC
Q 017317 161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKDEDYLVVCETFK 239 (373)
Q Consensus 161 ~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~ 239 (373)
.+..++...|-+|.|+.+. ..+-.+|.+ .+++...-+.+ -.....+.++|||. -|+..+.
T Consensus 411 ~VYqvawsaDsRLlVS~Sk---------------DsTLKvw~V--~tkKl~~DLpGh~DEVf~vDwspDG~--rV~sggk 471 (480)
T KOG0271|consen 411 AVYQVAWSADSRLLVSGSK---------------DSTLKVWDV--RTKKLKQDLPGHADEVFAVDWSPDGQ--RVASGGK 471 (480)
T ss_pred eeEEEEeccCccEEEEcCC---------------CceEEEEEe--eeeeecccCCCCCceEEEEEecCCCc--eeecCCC
Confidence 4677889999999999764 122344544 33443322221 22345788999997 3555677
Q ss_pred CeEEEEE
Q 017317 240 FRCLKYW 246 (373)
Q Consensus 240 ~~i~~~~ 246 (373)
++++++|
T Consensus 472 dkv~~lw 478 (480)
T KOG0271|consen 472 DKVLRLW 478 (480)
T ss_pred ceEEEee
Confidence 8899887
No 189
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=0.61 Score=43.08 Aligned_cols=181 Identities=13% Similarity=0.101 Sum_probs=91.8
Q ss_pred ceEEEecCCCEE-EEecCCeEEEEE-cCCceEE-eeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC--cEEEeec
Q 017317 80 EDVCVDRNGVLY-TATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASH 153 (373)
Q Consensus 80 ~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g--~~~l~~~ 153 (373)
..+++..+|.+. ++..+|.+..++ ++-.... .....+... .|.|.+||++.+.........++ .+| +....+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~-DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVK-DLDFSPDGKFLASIGADSARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccc-cceeCCCCcEEEEecCCceEEEEeccCchhhhcCCc
Confidence 456666676666 566777777776 5432211 112234456 89999999887765444555555 566 4433222
Q ss_pred cCCccccccceeEEcCC-CcEEEEeCCccccccccccccccccCCceEEEEeCCCC------eEEEeecCCCCcceEEEc
Q 017317 154 VNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN------ETSILLDSLFFANGVALS 226 (373)
Q Consensus 154 ~~~~~~~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~------~~~~~~~~~~~~~gi~~~ 226 (373)
.....+...+- -.|++ -.+++++.. .+.++|..++.... +.............++++
T Consensus 227 ~k~~~~~~cRF-~~d~~~~~l~laa~~---------------~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS 290 (398)
T KOG0771|consen 227 SKDEMFSSCRF-SVDNAQETLRLAASQ---------------FPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS 290 (398)
T ss_pred ccchhhhhcee-cccCCCceEEEEEec---------------CCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc
Confidence 12222222221 12222 267777543 13344444443211 111122234455678999
Q ss_pred cCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEE
Q 017317 227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280 (373)
Q Consensus 227 ~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva 280 (373)
.||+++-+. +..+.|..|+...- .....+...-.++..++.+.+|-+.-..
T Consensus 291 ~dGkf~AlG-T~dGsVai~~~~~l--q~~~~vk~aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 291 DDGKFLALG-TMDGSVAIYDAKSL--QRLQYVKEAHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred CCCcEEEEe-ccCCcEEEEEecee--eeeEeehhhheeeeeeEEEcCCcCcccc
Confidence 999965555 45677888774321 1111111111134556666666555444
No 190
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=95.30 E-value=2.2 Score=38.82 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=28.6
Q ss_pred ccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec
Q 017317 161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD 215 (373)
Q Consensus 161 ~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~ 215 (373)
.+|+|..+.+|.+.|+.- ....|+++|+.++++...+.
T Consensus 145 HiNsV~~~~~G~yLiS~R-----------------~~~~i~~I~~~tG~I~W~lg 182 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSR-----------------NTSTIYKIDPSTGKIIWRLG 182 (299)
T ss_pred EeeeeeecCCccEEEEec-----------------ccCEEEEEECCCCcEEEEeC
Confidence 467888889999888742 34689999988888766543
No 191
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.16 E-value=4 Score=40.98 Aligned_cols=153 Identities=13% Similarity=0.082 Sum_probs=81.4
Q ss_pred CCcceEEEecCCCEE--EEe-------cCCeEEEEEcCCceEEeeeecCccccCeEECCCC-cEEEEECCCcEEEEe-cC
Q 017317 77 NGPEDVCVDRNGVLY--TAT-------RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-EE 145 (373)
Q Consensus 77 ~~P~~ia~d~~G~l~--v~~-------~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g-~L~va~~~~gl~~~~-~~ 145 (373)
..+.+.++.++|... +.. ....|+..+..+....+.. ..... .-.++++| .||+......+.++. .+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t-~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLT-RPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCC-CceECCCCCceEEEecCcceEEEeccC
Confidence 456677888877644 331 1235666664444333322 12233 66789995 688775433454444 22
Q ss_pred C-cEEEeeccCC-c-c---ccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEE---EeCCCCeEEE---
Q 017317 146 G-VTVLASHVNG-S-R---INLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLK---YDPSLNETSI--- 212 (373)
Q Consensus 146 g-~~~l~~~~~~-~-~---~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~---~d~~~~~~~~--- 212 (373)
+ -++......+ . . ...+..+.+.+|| +|.+... ++|+. ...+.|..+.
T Consensus 428 ~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~-------------------g~v~Va~Vvr~~~G~~~l~~~ 488 (591)
T PRK13616 428 ATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIG-------------------GKVYLAVVEQTEDGQYALTNP 488 (591)
T ss_pred CCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEEC-------------------CEEEEEEEEeCCCCceeeccc
Confidence 2 2221111111 1 1 1257889999999 5655431 34443 3333444332
Q ss_pred --eecCCCC-cceEEEccCCCEEEEEeC-CCCeEEEEEecCCC
Q 017317 213 --LLDSLFF-ANGVALSKDEDYLVVCET-FKFRCLKYWLKGES 251 (373)
Q Consensus 213 --~~~~~~~-~~gi~~~~dg~~l~v~~~-~~~~i~~~~~~~~~ 251 (373)
+...+.. +..+.|..++. |++... .+..++++.++|..
T Consensus 489 ~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 489 REVGPGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWYVNLDGSN 530 (591)
T ss_pred EEeecccCCccccceEecCCE-EEEEecCCCCceEEEecCCcc
Confidence 3333444 47788999988 566543 34568888887754
No 192
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.13 E-value=1.7 Score=43.19 Aligned_cols=67 Identities=6% Similarity=0.031 Sum_probs=39.4
Q ss_pred eEEeeeecCccccCeEECCCCc-EEEEECC-CcEEEEe-cCCc----------EEEeeccCCccccccceeEEcCCCcEE
Q 017317 108 WENWKLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-EEGV----------TVLASHVNGSRINLADDLIAATDGSIY 174 (373)
Q Consensus 108 ~~~~~~~~~~p~~gl~~d~~g~-L~va~~~-~gl~~~~-~~g~----------~~l~~~~~~~~~~~~~~l~~~~dG~l~ 174 (373)
...+...+.+|+ |+.+++||+ +|++..- ..+-.+| .+.. ..+..+.. -...|-..++|.+|+.|
T Consensus 313 v~~yIPVGKsPH-GV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve--vGlGPLHTaFDg~G~ay 389 (635)
T PRK02888 313 LTRYVPVPKNPH-GVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE--LGLGPLHTAFDGRGNAY 389 (635)
T ss_pred eEEEEECCCCcc-ceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec--cCCCcceEEECCCCCEE
Confidence 334444577899 999999997 5665432 2344555 2211 11111111 12357788999999999
Q ss_pred EEe
Q 017317 175 FSV 177 (373)
Q Consensus 175 v~~ 177 (373)
.+-
T Consensus 390 tsl 392 (635)
T PRK02888 390 TTL 392 (635)
T ss_pred EeE
Confidence 873
No 193
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.05 E-value=2.8 Score=38.53 Aligned_cols=166 Identities=13% Similarity=0.101 Sum_probs=90.2
Q ss_pred cCCcceEEEec--CCCEEEEecCCeEEEEE--cCCceEEeee----ecCcccc--CeEECCCCcEEEEECCCcEEEEecC
Q 017317 76 LNGPEDVCVDR--NGVLYTATRDGWIKRLH--KNGTWENWKL----IGGDTLL--GITTTQENEILVCDADKGLLKVTEE 145 (373)
Q Consensus 76 ~~~P~~ia~d~--~G~l~v~~~~g~I~~~~--~~g~~~~~~~----~~~~p~~--gl~~d~~g~L~va~~~~gl~~~~~~ 145 (373)
+.-|.|..+=| +...+.-+.+|.+..+. .+|+.+.... ....|.. ......++.+|..+..+.++..+-+
T Consensus 134 i~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dls 213 (342)
T PF06433_consen 134 IDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLS 213 (342)
T ss_dssp EEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEET
T ss_pred ecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEecc
Confidence 55576654433 45566777899987666 5776543221 1122220 1122344567766665567777733
Q ss_pred C--cEEEeec--------cCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee
Q 017317 146 G--VTVLASH--------VNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214 (373)
Q Consensus 146 g--~~~l~~~--------~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~ 214 (373)
| .+..... ..+-.-.+-.-+++++ .++|||.-.....+.+ ..+.-.||.||.++++.....
T Consensus 214 g~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsH--------KdpgteVWv~D~~t~krv~Ri 285 (342)
T PF06433_consen 214 GDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSH--------KDPGTEVWVYDLKTHKRVARI 285 (342)
T ss_dssp TSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-T--------TS-EEEEEEEETTTTEEEEEE
T ss_pred CCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCc--------cCCceEEEEEECCCCeEEEEE
Confidence 3 3332211 0111112334477764 6799997432111111 112336999999988765443
Q ss_pred cCCCCcceEEEccCCC-EEEEEeCCCCeEEEEEecC
Q 017317 215 DSLFFANGVALSKDED-YLVVCETFKFRCLKYWLKG 249 (373)
Q Consensus 215 ~~~~~~~gi~~~~dg~-~l~v~~~~~~~i~~~~~~~ 249 (373)
..-....+|+++.|.+ .||..+.....|..||...
T Consensus 286 ~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 286 PLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred eCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 3223456899999887 5555666677899999653
No 194
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=95.02 E-value=0.89 Score=42.10 Aligned_cols=125 Identities=11% Similarity=0.086 Sum_probs=73.2
Q ss_pred cCCeEEEEE-cCCceEEeeeecCccccCeEECCCC-cEEEEECCCcEEEEe-cCC-cEEEeeccCCccccccceeEEcCC
Q 017317 95 RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD 170 (373)
Q Consensus 95 ~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g-~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~d 170 (373)
.++.|..|| .....+......+... ++....+| .|..+.....+-.+| .+- +...+....-......+.+.|.|+
T Consensus 320 ~DkkvRfwD~Rs~~~~~sv~~gg~vt-Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 320 FDKKVRFWDIRSADKTRSVPLGGRVT-SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred cccceEEEeccCCceeeEeecCccee-eEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence 455565565 3333332233345555 77777777 466665544455555 332 333332211111223567889998
Q ss_pred CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCC---cceEEEccCCCEEEEEeC
Q 017317 171 GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF---ANGVALSKDEDYLVVCET 237 (373)
Q Consensus 171 G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~---~~gi~~~~dg~~l~v~~~ 237 (373)
|....+.+ .+|.||.++..+++.+........ -..++|++.|.+|+-++.
T Consensus 399 ~~YvaAGS-----------------~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 399 GSYVAAGS-----------------ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred Cceeeecc-----------------CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence 87665543 468999999999998876554333 356788898887777654
No 195
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=94.98 E-value=0.025 Score=30.04 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=13.4
Q ss_pred CCceeECCCCCEEEEEe
Q 017317 266 PDNIKLAPDGSFWIAIL 282 (373)
Q Consensus 266 p~~i~~d~dG~lwva~~ 282 (373)
...++.|++|+||++|.
T Consensus 7 I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 7 IYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp EEEEEE-TTSCEEEEET
T ss_pred EEEEEEcCCcCEEEEeC
Confidence 34588999999999985
No 196
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=94.95 E-value=1.2 Score=41.10 Aligned_cols=142 Identities=17% Similarity=0.183 Sum_probs=75.7
Q ss_pred EEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECC-CcEEEEe-cCCcEEEeeccCCccccccceeEEc
Q 017317 92 TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEGVTVLASHVNGSRINLADDLIAA 168 (373)
Q Consensus 92 v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~-~gl~~~~-~~g~~~l~~~~~~~~~~~~~~l~~~ 168 (373)
.+..++.|..++ .+|........+.... ++.+..||.++++... +.|..+| ..| +++... .+.....+....+-
T Consensus 149 sag~Dn~v~iWnv~tgeali~l~hpd~i~-S~sfn~dGs~l~TtckDKkvRv~dpr~~-~~v~e~-~~heG~k~~Raifl 225 (472)
T KOG0303|consen 149 SAGSDNTVSIWNVGTGEALITLDHPDMVY-SMSFNRDGSLLCTTCKDKKVRVIDPRRG-TVVSEG-VAHEGAKPARAIFL 225 (472)
T ss_pred hccCCceEEEEeccCCceeeecCCCCeEE-EEEeccCCceeeeecccceeEEEcCCCC-cEeeec-ccccCCCcceeEEe
Confidence 344566777777 4554322223445566 8999999998887543 4566666 455 222221 11111233344555
Q ss_pred CCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEE---EccCCCEEEEEeCCCCeEEEE
Q 017317 169 TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA---LSKDEDYLVVCETFKFRCLKY 245 (373)
Q Consensus 169 ~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~---~~~dg~~l~v~~~~~~~i~~~ 245 (373)
.+|.+ ++++-++..- ..+-.+|+++-+.-.....+...+|+. +++|.+.+|++.-++..|.-|
T Consensus 226 ~~g~i-~tTGfsr~se-------------Rq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYy 291 (472)
T KOG0303|consen 226 ASGKI-FTTGFSRMSE-------------RQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYF 291 (472)
T ss_pred ccCce-eeeccccccc-------------cceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEE
Confidence 67774 3433222211 123334443222112222334456655 478999999999888877777
Q ss_pred EecCC
Q 017317 246 WLKGE 250 (373)
Q Consensus 246 ~~~~~ 250 (373)
.+..+
T Consensus 292 Eit~d 296 (472)
T KOG0303|consen 292 EITNE 296 (472)
T ss_pred EecCC
Confidence 76544
No 197
>KOG4328 consensus WD40 protein [Function unknown]
Probab=94.91 E-value=3.4 Score=38.91 Aligned_cols=27 Identities=7% Similarity=-0.069 Sum_probs=21.9
Q ss_pred cceEEEccCCCEEEEEeCCCCeEEEEEe
Q 017317 220 ANGVALSKDEDYLVVCETFKFRCLKYWL 247 (373)
Q Consensus 220 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~ 247 (373)
.+...|||++.. +++....+.|..|+.
T Consensus 372 V~sAyFSPs~gt-l~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 372 VNSAYFSPSGGT-LLTTCQDNEIRVFDS 398 (498)
T ss_pred eeeeEEcCCCCc-eEeeccCCceEEeec
Confidence 467789999886 777778889999985
No 198
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=94.80 E-value=0.048 Score=28.93 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=16.5
Q ss_pred cccccceeEEcCCCcEEEEeC
Q 017317 158 RINLADDLIAATDGSIYFSVA 178 (373)
Q Consensus 158 ~~~~~~~l~~~~dG~l~v~~~ 178 (373)
+.+.+.+|..|++|+|||++.
T Consensus 3 ~~n~I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 3 PNNNIYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp SSSCEEEEEE-TTSCEEEEET
T ss_pred CCCeEEEEEEcCCcCEEEEeC
Confidence 345788999999999999863
No 199
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=94.71 E-value=0.47 Score=43.79 Aligned_cols=172 Identities=14% Similarity=0.242 Sum_probs=96.8
Q ss_pred EEEecCC-CEEEEecCCeEEEEEcCC-ceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC--cEEEeeccCC
Q 017317 82 VCVDRNG-VLYTATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASHVNG 156 (373)
Q Consensus 82 ia~d~~G-~l~v~~~~g~I~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g--~~~l~~~~~~ 156 (373)
|...|+| +|.+|+..|..-.++... .++.+......++.++.+..+|.-.|.....|.+++- ++- ++.+..
T Consensus 102 v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~a---- 177 (464)
T KOG0284|consen 102 VRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQA---- 177 (464)
T ss_pred EEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhH----
Confidence 4456664 577888888776664211 2222222223444378888888766665456777765 322 222211
Q ss_pred ccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE-EeecCCCCcceEEEccCCCEEEEE
Q 017317 157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFANGVALSKDEDYLVVC 235 (373)
Q Consensus 157 ~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~~~~~~~~gi~~~~dg~~l~v~ 235 (373)
.....+.++++.|+...+++.+. .|.|...|..-.+-+ ++......+..+.+.|... |+++
T Consensus 178 hh~eaIRdlafSpnDskF~t~Sd-----------------Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-Lias 239 (464)
T KOG0284|consen 178 HHAEAIRDLAFSPNDSKFLTCSD-----------------DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-LIAS 239 (464)
T ss_pred hhhhhhheeccCCCCceeEEecC-----------------CCeEEEEeccCCchhheeccCCCCcceeccCCccc-eeEE
Confidence 12235789999999888888764 466666665433333 2333345678899999976 7776
Q ss_pred eCCCCeEEEEEecCCCCcceeEEecCCCCC---CCceeECCCCCEEEEE
Q 017317 236 ETFKFRCLKYWLKGESKEQTEIFVENLPGG---PDNIKLAPDGSFWIAI 281 (373)
Q Consensus 236 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~---p~~i~~d~dG~lwva~ 281 (373)
...++ +.++| +++.+.. +. .+.++ .-.+.+.++|++..+.
T Consensus 240 gskDn-lVKlW--DprSg~c--l~-tlh~HKntVl~~~f~~n~N~Llt~ 282 (464)
T KOG0284|consen 240 GSKDN-LVKLW--DPRSGSC--LA-TLHGHKNTVLAVKFNPNGNWLLTG 282 (464)
T ss_pred ccCCc-eeEee--cCCCcch--hh-hhhhccceEEEEEEcCCCCeeEEc
Confidence 66565 66655 2232221 11 11222 2235567777655554
No 200
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.69 E-value=0.15 Score=45.06 Aligned_cols=119 Identities=17% Similarity=0.089 Sum_probs=67.4
Q ss_pred EEccCCCEEEEEeCC----CCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHH
Q 017317 224 ALSKDEDYLVVCETF----KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATK 299 (373)
Q Consensus 224 ~~~~dg~~l~v~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~ 299 (373)
.|++||++||.+|.. ++-|-.||... ...+...|.. -.-.|-.+..-.||+..+..+++. ...|...
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~-~fqrvgE~~t-~GiGpHev~lm~DGrtlvvanGGI-------ethpdfg 190 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDARE-GFQRVGEFST-HGIGPHEVTLMADGRTLVVANGGI-------ETHPDFG 190 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEeccc-ccceeccccc-CCcCcceeEEecCCcEEEEeCCce-------ecccccC
Confidence 489999999998753 34566787652 3333333321 112477888889999888877752 1111111
Q ss_pred HHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeC
Q 017317 300 HLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSL 360 (373)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~ 360 (373)
+.-.. ...++| .++.++ .+|+.++...-|.......+.-+..+ +|++|+|..
T Consensus 191 R~~lN-ldsMeP--------Slvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 191 RTELN-LDSMEP--------SLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred ccccc-hhhcCc--------cEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 10000 011111 245566 78888776655544334456666654 689999863
No 201
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=94.58 E-value=5.4 Score=39.63 Aligned_cols=206 Identities=11% Similarity=0.052 Sum_probs=106.3
Q ss_pred CCCEEEEecCCeEEEEEcCCc--eEEeeeecCccccCeEECCCCcEEEEECCCcEEEEecCC-cEEEeeccCCccccccc
Q 017317 87 NGVLYTATRDGWIKRLHKNGT--WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLASHVNGSRINLAD 163 (373)
Q Consensus 87 ~G~l~v~~~~g~I~~~~~~g~--~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g-~~~l~~~~~~~~~~~~~ 163 (373)
.|+|.+|..+..|.++..++. ...+........ ++....++.+.-+..+..+..+.... ... ..+.. ..+.
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC-~ls~~~~~~~iSgSWD~TakvW~~~~l~~~----l~gH~-asVW 144 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVC-SLSIGEDGTLISGSWDSTAKVWRIGELVYS----LQGHT-ASVW 144 (745)
T ss_pred CcceEeecccceEEEEecCCCCchhhhhcccccee-eeecCCcCceEecccccceEEecchhhhcc----cCCcc-hhee
Confidence 678999999999998875442 112222234455 88888888855555444333332111 111 12211 2355
Q ss_pred eeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEE
Q 017317 164 DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCL 243 (373)
Q Consensus 164 ~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~ 243 (373)
+++.-+++ .|++.+. .-.|..+.. +...+.+........|+++-+++.++ +..+++.|.
T Consensus 145 Av~~l~e~-~~vTgsa-----------------DKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~fl--ScsNDg~Ir 203 (745)
T KOG0301|consen 145 AVASLPEN-TYVTGSA-----------------DKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSHFL--SCSNDGSIR 203 (745)
T ss_pred eeeecCCC-cEEeccC-----------------cceeeeccC-CchhhhhccchhheeeeEEecCCCeE--eecCCceEE
Confidence 66666776 7777543 122333332 22222333333445688888886533 333444555
Q ss_pred EEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEE
Q 017317 244 KYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVN 323 (373)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~ 323 (373)
+++++|+..-. .. .-..+...+....++.+.+++...| -++
T Consensus 204 ~w~~~ge~l~~---~~-ghtn~vYsis~~~~~~~Ivs~gEDr-----------------------------------tlr 244 (745)
T KOG0301|consen 204 LWDLDGEVLLE---MH-GHTNFVYSISMALSDGLIVSTGEDR-----------------------------------TLR 244 (745)
T ss_pred EEeccCceeee---ee-ccceEEEEEEecCCCCeEEEecCCc-----------------------------------eEE
Confidence 55665542211 11 0111223344445666777776543 245
Q ss_pred ECCCCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeCCC
Q 017317 324 VAANGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSLNT 362 (373)
Q Consensus 324 ~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~~~ 362 (373)
+...++..+.+.-|.- .+.++..- +|.|++|+-.+
T Consensus 245 iW~~~e~~q~I~lPtt----siWsa~~L~NgDIvvg~SDG 280 (745)
T KOG0301|consen 245 IWKKDECVQVITLPTT----SIWSAKVLLNGDIVVGGSDG 280 (745)
T ss_pred EeecCceEEEEecCcc----ceEEEEEeeCCCEEEeccCc
Confidence 5555677777766652 23444432 67777777533
No 202
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=94.58 E-value=1.2 Score=42.36 Aligned_cols=136 Identities=10% Similarity=0.092 Sum_probs=73.1
Q ss_pred CeEECCCCcEEEE-ECCCcEEEEe-cCCcEEEeeccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCC
Q 017317 121 GITTTQENEILVC-DADKGLLKVT-EEGVTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPH 197 (373)
Q Consensus 121 gl~~d~~g~L~va-~~~~gl~~~~-~~g~~~l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~ 197 (373)
.|++.+|.++-++ -..+.|..+| .+- .+.....|.. .....|.+.+|| +||-+.- .
T Consensus 514 ALa~spDakvcFsccsdGnI~vwDLhnq--~~VrqfqGht-DGascIdis~dGtklWTGGl------------------D 572 (705)
T KOG0639|consen 514 ALAISPDAKVCFSCCSDGNIAVWDLHNQ--TLVRQFQGHT-DGASCIDISKDGTKLWTGGL------------------D 572 (705)
T ss_pred hhhcCCccceeeeeccCCcEEEEEcccc--eeeecccCCC-CCceeEEecCCCceeecCCC------------------c
Confidence 7788888887554 3334466677 433 2222233322 245678899999 6887643 2
Q ss_pred ceEEEEeCCCCeEEEeecCC-CCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC
Q 017317 198 GKLLKYDPSLNETSILLDSL-FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS 276 (373)
Q Consensus 198 g~l~~~d~~~~~~~~~~~~~-~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~ 276 (373)
..|.++|...++.- ....+ .....+...|.++++.|.= .++.+......++. +...-. .....-.+.+..-|.
T Consensus 573 ntvRcWDlregrql-qqhdF~SQIfSLg~cP~~dWlavGM-ens~vevlh~skp~--kyqlhl--heScVLSlKFa~cGk 646 (705)
T KOG0639|consen 573 NTVRCWDLREGRQL-QQHDFSSQIFSLGYCPTGDWLAVGM-ENSNVEVLHTSKPE--KYQLHL--HESCVLSLKFAYCGK 646 (705)
T ss_pred cceeehhhhhhhhh-hhhhhhhhheecccCCCccceeeec-ccCcEEEEecCCcc--ceeecc--cccEEEEEEecccCc
Confidence 56777776544211 11111 1223455678888777653 34446655544321 111100 011223366788999
Q ss_pred EEEEEec
Q 017317 277 FWIAILQ 283 (373)
Q Consensus 277 lwva~~~ 283 (373)
.||.+..
T Consensus 647 wfvStGk 653 (705)
T KOG0639|consen 647 WFVSTGK 653 (705)
T ss_pred eeeecCc
Confidence 9999864
No 203
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.54 E-value=1 Score=46.43 Aligned_cols=143 Identities=16% Similarity=0.166 Sum_probs=83.0
Q ss_pred cCCcceEEEecCCCEE-EEecCCeEEEEEcC-----------C---ceEEe------eeecCccccCeEECCCCcEEEE-
Q 017317 76 LNGPEDVCVDRNGVLY-TATRDGWIKRLHKN-----------G---TWENW------KLIGGDTLLGITTTQENEILVC- 133 (373)
Q Consensus 76 ~~~P~~ia~d~~G~l~-v~~~~g~I~~~~~~-----------g---~~~~~------~~~~~~p~~gl~~d~~g~L~va- 133 (373)
...-.++-+.+||..+ +|+.+.-|..+... | .++.+ ....+... .+++++++.+.+.
T Consensus 69 ~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-Dv~Wsp~~~~lvS~ 147 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-DVNWSPDDSLLVSV 147 (942)
T ss_pred cCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc-eeccCCCccEEEEe
Confidence 3445566688888655 77777665555532 1 11111 12234456 8889998888775
Q ss_pred ECCCcEEEEe-cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE
Q 017317 134 DADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET 210 (373)
Q Consensus 134 ~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~ 210 (373)
...+.++.++ .+. .+++..+ ...+-++.+||-|+.+.+.+. ...|..++..+...
T Consensus 148 s~DnsViiwn~~tF~~~~vl~~H-----~s~VKGvs~DP~Gky~ASqsd-----------------Drtikvwrt~dw~i 205 (942)
T KOG0973|consen 148 SLDNSVIIWNAKTFELLKVLRGH-----QSLVKGVSWDPIGKYFASQSD-----------------DRTLKVWRTSDWGI 205 (942)
T ss_pred cccceEEEEccccceeeeeeecc-----cccccceEECCccCeeeeecC-----------------CceEEEEEccccee
Confidence 3346688887 333 3333221 235678999999998877654 23444444333344
Q ss_pred EEeecCC-C------CcceEEEccCCCEEEEEeCCCCe
Q 017317 211 SILLDSL-F------FANGVALSKDEDYLVVCETFKFR 241 (373)
Q Consensus 211 ~~~~~~~-~------~~~gi~~~~dg~~l~v~~~~~~~ 241 (373)
+...... . +-.-+.|+|||++|-..+..++.
T Consensus 206 ~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~ 243 (942)
T KOG0973|consen 206 EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG 243 (942)
T ss_pred eEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence 4333221 1 12357899999988877765543
No 204
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=94.47 E-value=3.8 Score=37.48 Aligned_cols=146 Identities=10% Similarity=0.028 Sum_probs=80.1
Q ss_pred ceEEEecCCCEE-EEecCCeEEEEE-cCCceEE-eeeecCccccCeEECCCCcEEEEECCCcEEE-Ee-cCC-cEEEeec
Q 017317 80 EDVCVDRNGVLY-TATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILVCDADKGLLK-VT-EEG-VTVLASH 153 (373)
Q Consensus 80 ~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~-~~-~~g-~~~l~~~ 153 (373)
-+++.+|+.++. .|..+..-+.++ .+|.+.. ......... .+.|..+|.+.+...-.|.++ +. .+| .+....
T Consensus 68 Favsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt-~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~- 145 (399)
T KOG0296|consen 68 FAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVT-CCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD- 145 (399)
T ss_pred EEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceE-EEEEccCceEEEecCCCccEEEEEcccCceEEEee-
Confidence 346667755554 344555666666 4554221 111223345 778888888776532245444 44 455 332221
Q ss_pred cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-CCcceEEEccCCCEE
Q 017317 154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVALSKDEDYL 232 (373)
Q Consensus 154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~~~gi~~~~dg~~l 232 (373)
.....+.-|...|.+.+.++.+ ..|.+|.+....+....+..+. ...+-=.|.|||+.+
T Consensus 146 ---~e~~dieWl~WHp~a~illAG~-----------------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~ 205 (399)
T KOG0296|consen 146 ---QEVEDIEWLKWHPRAHILLAGS-----------------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRI 205 (399)
T ss_pred ---cccCceEEEEecccccEEEeec-----------------CCCcEEEEECCCcceeeEecCCCCCcccccccCCCceE
Confidence 1112334566788888777644 3578888876553333333332 223334578999966
Q ss_pred EEEeCCCCeEEEEEec
Q 017317 233 VVCETFKFRCLKYWLK 248 (373)
Q Consensus 233 ~v~~~~~~~i~~~~~~ 248 (373)
..... +..|..++..
T Consensus 206 ~tgy~-dgti~~Wn~k 220 (399)
T KOG0296|consen 206 LTGYD-DGTIIVWNPK 220 (399)
T ss_pred EEEec-CceEEEEecC
Confidence 66654 6677777754
No 205
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=94.33 E-value=6.9 Score=39.81 Aligned_cols=143 Identities=11% Similarity=0.076 Sum_probs=82.4
Q ss_pred CccccCeEECCCCcE-EEEECCCcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccc
Q 017317 116 GDTLLGITTTQENEI-LVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLL 192 (373)
Q Consensus 116 ~~p~~gl~~d~~g~L-~va~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~ 192 (373)
.... +++++.=|++ +++...+.|-+++ ++| .+.-....+ .....+.+++.|.-+++.|+.+.
T Consensus 449 ~~~~-av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~-ah~~~V~gla~D~~n~~~vsa~~------------- 513 (910)
T KOG1539|consen 449 INAT-AVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP-AHKGEVTGLAVDGTNRLLVSAGA------------- 513 (910)
T ss_pred cceE-EEEEeccCceEEEeccCCeEEEEEcccCeeecccccCc-cccCceeEEEecCCCceEEEccC-------------
Confidence 3445 7777777875 4555555578888 888 332211101 11235678999988899898754
Q ss_pred cccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeEC
Q 017317 193 EAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA 272 (373)
Q Consensus 193 ~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d 272 (373)
.|-+-.+|-+++....-..-.....++..+.... +++.......|..||....+.- +.|- .-......++++
T Consensus 514 ----~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~kvv--R~f~-gh~nritd~~FS 585 (910)
T KOG1539|consen 514 ----DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTRKVV--REFW-GHGNRITDMTFS 585 (910)
T ss_pred ----cceEEEEecCCcceeeeeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhhhhh--HHhh-ccccceeeeEeC
Confidence 3445455544333222222234456666666655 6666666778888886543321 1121 112356778999
Q ss_pred CCCCEEEEE
Q 017317 273 PDGSFWIAI 281 (373)
Q Consensus 273 ~dG~lwva~ 281 (373)
+||+..+..
T Consensus 586 ~DgrWlisa 594 (910)
T KOG1539|consen 586 PDGRWLISA 594 (910)
T ss_pred CCCcEEEEe
Confidence 999855443
No 206
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.26 E-value=1.6 Score=40.92 Aligned_cols=100 Identities=21% Similarity=0.417 Sum_probs=51.2
Q ss_pred cceEEE--ec-CCCEE--EEecCCeEEEEE----cCCce--EEe--eeecCccccCeEEC-CCCcEEEEECCCcEEEEe-
Q 017317 79 PEDVCV--DR-NGVLY--TATRDGWIKRLH----KNGTW--ENW--KLIGGDTLLGITTT-QENEILVCDADKGLLKVT- 143 (373)
Q Consensus 79 P~~ia~--d~-~G~l~--v~~~~g~I~~~~----~~g~~--~~~--~~~~~~p~~gl~~d-~~g~L~va~~~~gl~~~~- 143 (373)
|++++. ++ +|.+| +...+|.+..+. .+|.+ +.+ ......+- |+++| ..|.||+++...||++++
T Consensus 158 ~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~E-GCVVDDe~g~LYvgEE~~GIW~y~A 236 (381)
T PF02333_consen 158 PYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPE-GCVVDDETGRLYVGEEDVGIWRYDA 236 (381)
T ss_dssp EEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EE-EEEEETTTTEEEEEETTTEEEEEES
T ss_pred ceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcce-EEEEecccCCEEEecCccEEEEEec
Confidence 455554 33 57777 445667764443 23432 111 12345677 88887 677899999999999999
Q ss_pred -cCC--cEEEeeccCCccc-cccceeEE--cCC--CcEEEEeCC
Q 017317 144 -EEG--VTVLASHVNGSRI-NLADDLIA--ATD--GSIYFSVAS 179 (373)
Q Consensus 144 -~~g--~~~l~~~~~~~~~-~~~~~l~~--~~d--G~l~v~~~~ 179 (373)
+++ ...+.....+..+ .-+.+|++ ..+ |.|.+++.+
T Consensus 237 ep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG 280 (381)
T PF02333_consen 237 EPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG 280 (381)
T ss_dssp SCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG
T ss_pred CCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCC
Confidence 333 3333322233222 23445554 334 456666543
No 207
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.26 E-value=4.1 Score=41.02 Aligned_cols=146 Identities=14% Similarity=0.066 Sum_probs=79.8
Q ss_pred CeEECCCCcEEEEECCCcEEEEec--CC-cEEEeeccCCccccccceeEEcCC-CcEEEEeCCccccccccccccccccC
Q 017317 121 GITTTQENEILVCDADKGLLKVTE--EG-VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKP 196 (373)
Q Consensus 121 gl~~d~~g~L~va~~~~gl~~~~~--~g-~~~l~~~~~~~~~~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~ 196 (373)
.|.+.+++-|.-+..++.+..++. +. +..+.. ..++..++|.|- .+.+++.+-
T Consensus 374 DlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~H------ndfVTcVaFnPvDDryFiSGSL----------------- 430 (712)
T KOG0283|consen 374 DLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSH------NDFVTCVAFNPVDDRYFISGSL----------------- 430 (712)
T ss_pred ecccccCCeeEeccccccEEeecCCCcceeeEEec------CCeeEEEEecccCCCcEeeccc-----------------
Confidence 667777766766655555544542 22 444432 247889999985 466666432
Q ss_pred CceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEe-c---CC-CCCCCceeE
Q 017317 197 HGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFV-E---NL-PGGPDNIKL 271 (373)
Q Consensus 197 ~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~---~~-~g~p~~i~~ 271 (373)
.|.+-.++....++....+--.....+++.|||++.+|. +.++.++.|+..+.++....... . .. .....|+-+
T Consensus 431 D~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIG-t~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~ 509 (712)
T KOG0283|consen 431 DGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIG-TFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQF 509 (712)
T ss_pred ccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEE-EeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEe
Confidence 344444443334544333333456789999999966655 45566777776554332211111 0 00 112444444
Q ss_pred CCCC--CEEEEEecCCCchhh
Q 017317 272 APDG--SFWIAILQLSSPGLE 290 (373)
Q Consensus 272 d~dG--~lwva~~~~~~~~~~ 290 (373)
.+.- .+.|++++.+..+.+
T Consensus 510 ~p~~~~~vLVTSnDSrIRI~d 530 (712)
T KOG0283|consen 510 FPGDPDEVLVTSNDSRIRIYD 530 (712)
T ss_pred cCCCCCeEEEecCCCceEEEe
Confidence 3211 588998887644433
No 208
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=94.07 E-value=3.1 Score=36.58 Aligned_cols=151 Identities=9% Similarity=0.028 Sum_probs=85.4
Q ss_pred CCcceEEEecC-CCEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECC-----Cc-EEEEe-cCC-
Q 017317 77 NGPEDVCVDRN-GVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDAD-----KG-LLKVT-EEG- 146 (373)
Q Consensus 77 ~~P~~ia~d~~-G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~-----~g-l~~~~-~~g- 146 (373)
..-+++.+|.+ ..+..|+.+..+..|| ++|+..-....+.... .+-|+.+|++.++... .+ +..++ ++.
T Consensus 53 GavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk-~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 53 GAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVK-RVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred ceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeE-EEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 34567777763 4455777888888888 7776544333333334 7778888887665322 12 33333 211
Q ss_pred -----cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee--cCCCC
Q 017317 147 -----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFF 219 (373)
Q Consensus 147 -----~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~~~~~ 219 (373)
.+.+.. +. .+...++....++-|...|+.. ..|.|-+||..+++..+-. .....
T Consensus 132 ~~~~s~ep~~k-I~-t~~skit~a~Wg~l~~~ii~Gh-----------------e~G~is~~da~~g~~~v~s~~~h~~~ 192 (327)
T KOG0643|consen 132 SDIDSEEPYLK-IP-TPDSKITSALWGPLGETIIAGH-----------------EDGSISIYDARTGKELVDSDEEHSSK 192 (327)
T ss_pred hhhcccCceEE-ec-CCccceeeeeecccCCEEEEec-----------------CCCcEEEEEcccCceeeechhhhccc
Confidence 111100 01 0112345556677776666543 3588999998876433211 11234
Q ss_pred cceEEEccCCCEEEEEeCCCCeEEEEEec
Q 017317 220 ANGVALSKDEDYLVVCETFKFRCLKYWLK 248 (373)
Q Consensus 220 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 248 (373)
-+.+.+++|.. .+++.+....-..+|..
T Consensus 193 Ind~q~s~d~T-~FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 193 INDLQFSRDRT-YFITGSKDTTAKLVDVR 220 (327)
T ss_pred cccccccCCcc-eEEecccCccceeeecc
Confidence 67899999987 67776666555555543
No 209
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.03 E-value=2.9 Score=38.28 Aligned_cols=176 Identities=16% Similarity=0.146 Sum_probs=92.4
Q ss_pred CCcceEEEecCC--CEEEEecCCeEEEEEcCCc--eEEeeeecCccccCeEECCCCcEEEEECCCcEEEEecCC--cEEE
Q 017317 77 NGPEDVCVDRNG--VLYTATRDGWIKRLHKNGT--WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVL 150 (373)
Q Consensus 77 ~~P~~ia~d~~G--~l~v~~~~g~I~~~~~~g~--~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g--~~~l 150 (373)
.|-.++|-+|+. .+..|+.+|.|..|+...+ ...+....|-.. ||+++....+++++. +.+-.+--+| ...+
T Consensus 67 dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~-Gi~v~~~~~~tvgdD-KtvK~wk~~~~p~~ti 144 (433)
T KOG0268|consen 67 DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVR-GICVTQTSFFTVGDD-KTVKQWKIDGPPLHTI 144 (433)
T ss_pred cccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCcee-eEEecccceEEecCC-cceeeeeccCCcceee
Confidence 445566666643 3457778999988884332 233333345556 999987445666653 3343332122 2221
Q ss_pred eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCC-CeEEEeecCCCCcceEEEccCC
Q 017317 151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILLDSLFFANGVALSKDE 229 (373)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~~~~~~~~~~gi~~~~dg 229 (373)
... ....+|.-...++++.+.+ ..|-.+|..- .-+..+..+...-..+.+.|-.
T Consensus 145 lg~------s~~~gIdh~~~~~~FaTcG-------------------e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE 199 (433)
T KOG0268|consen 145 LGK------SVYLGIDHHRKNSVFATCG-------------------EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVE 199 (433)
T ss_pred ecc------ccccccccccccccccccC-------------------ceeeecccccCCccceeecCCCceeEEecCCCc
Confidence 110 1122333333344544432 1233344321 1122233344444567777877
Q ss_pred CEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEec
Q 017317 230 DYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ 283 (373)
Q Consensus 230 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~ 283 (373)
..++.+...+..|+.||+.....-+ .+. +...++.|+..+++..+++...
T Consensus 200 TsILas~~sDrsIvLyD~R~~~Pl~-KVi---~~mRTN~IswnPeafnF~~a~E 249 (433)
T KOG0268|consen 200 TSILASCASDRSIVLYDLRQASPLK-KVI---LTMRTNTICWNPEAFNFVAANE 249 (433)
T ss_pred chheeeeccCCceEEEecccCCccc-eee---eeccccceecCccccceeeccc
Confidence 7788887778899999976432211 121 1235677888887766666543
No 210
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=93.99 E-value=4 Score=35.91 Aligned_cols=155 Identities=14% Similarity=0.139 Sum_probs=92.6
Q ss_pred CCcCCcceEEEecC-CCEEE-EecCCeEEEEEcC-C-ceEEe---eeecCc-cccCeEECCCCcEEEE-ECCCcEEEEe-
Q 017317 74 GILNGPEDVCVDRN-GVLYT-ATRDGWIKRLHKN-G-TWENW---KLIGGD-TLLGITTTQENEILVC-DADKGLLKVT- 143 (373)
Q Consensus 74 g~~~~P~~ia~d~~-G~l~v-~~~~g~I~~~~~~-g-~~~~~---~~~~~~-p~~gl~~d~~g~L~va-~~~~gl~~~~- 143 (373)
|....-.++|..|. |.++. +..+..|..++.. + .++.. .....+ .. .+++.|.|++.++ .....+..+.
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVR-svAwsp~g~~La~aSFD~t~~Iw~k 90 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVR-SVAWSPHGRYLASASFDATVVIWKK 90 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheee-eeeecCCCcEEEEeeccceEEEeec
Confidence 44445678888886 88664 4455566666543 2 22221 111223 34 8899999996554 3333333333
Q ss_pred cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe---ecCCCC
Q 017317 144 EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL---LDSLFF 219 (373)
Q Consensus 144 ~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~---~~~~~~ 219 (373)
.++ ++.+.. ..|. .+.+-.+++.++|++..+.+.. ..--||.+|. ..+++.. .+..+.
T Consensus 91 ~~~efecv~~-lEGH-EnEVK~Vaws~sG~~LATCSRD---------------KSVWiWe~de-ddEfec~aVL~~HtqD 152 (312)
T KOG0645|consen 91 EDGEFECVAT-LEGH-ENEVKCVAWSASGNYLATCSRD---------------KSVWIWEIDE-DDEFECIAVLQEHTQD 152 (312)
T ss_pred CCCceeEEee-eecc-ccceeEEEEcCCCCEEEEeeCC---------------CeEEEEEecC-CCcEEEEeeecccccc
Confidence 455 666543 3432 2457789999999988887541 1123445552 3455532 233444
Q ss_pred cceEEEccCCCEEEEEeCCCCeEEEEEec
Q 017317 220 ANGVALSKDEDYLVVCETFKFRCLKYWLK 248 (373)
Q Consensus 220 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 248 (373)
...+.++|..+ |+++.+..+.|..|+-.
T Consensus 153 VK~V~WHPt~d-lL~S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 153 VKHVIWHPTED-LLFSCSYDNTIKVYRDE 180 (312)
T ss_pred ccEEEEcCCcc-eeEEeccCCeEEEEeec
Confidence 56889999887 88999999999888744
No 211
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=93.68 E-value=3.2 Score=42.77 Aligned_cols=132 Identities=17% Similarity=0.228 Sum_probs=76.9
Q ss_pred cCCeEEEEE-cCCce-EEeeeecCccccCeEEC------CCCcEEEEECCCcEEEEe-c-CCcEEEeecc-CCccccccc
Q 017317 95 RDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTT------QENEILVCDADKGLLKVT-E-EGVTVLASHV-NGSRINLAD 163 (373)
Q Consensus 95 ~~g~I~~~~-~~g~~-~~~~~~~~~p~~gl~~d------~~g~L~va~~~~gl~~~~-~-~g~~~l~~~~-~~~~~~~~~ 163 (373)
....|+++| ..|++ +.|......++..++-+ ....-|++-..++++++| + .|-.++.... .-...+.-.
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 346788888 45653 33322111211133322 123578887778999999 3 3422221111 101122345
Q ss_pred eeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEEEeCCCCeE
Q 017317 164 DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVCETFKFRC 242 (373)
Q Consensus 164 ~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~~~~i 242 (373)
+++.+.+|+|-|+... |.|-.||.-+.+....+.++..| .||.++.||++++.+.. .-|
T Consensus 582 ~~aTt~~G~iavgs~~------------------G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~--tyL 641 (794)
T PF08553_consen 582 CFATTEDGYIAVGSNK------------------GDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK--TYL 641 (794)
T ss_pred EEEecCCceEEEEeCC------------------CcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec--ceE
Confidence 7788899999998653 77888886655555556666666 68999999997776643 345
Q ss_pred EEEE
Q 017317 243 LKYW 246 (373)
Q Consensus 243 ~~~~ 246 (373)
..++
T Consensus 642 lLi~ 645 (794)
T PF08553_consen 642 LLID 645 (794)
T ss_pred EEEE
Confidence 5555
No 212
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=93.54 E-value=4.8 Score=35.29 Aligned_cols=178 Identities=14% Similarity=0.175 Sum_probs=91.5
Q ss_pred CcceEEEec-CCCEE-EEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEE-EEECCCcEEEEe-cCCcEEEee
Q 017317 78 GPEDVCVDR-NGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEIL-VCDADKGLLKVT-EEGVTVLAS 152 (373)
Q Consensus 78 ~P~~ia~d~-~G~l~-v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~-va~~~~gl~~~~-~~g~~~l~~ 152 (373)
.-+.++.++ ...++ +++.+..|.+++ ..++........+.-. .+.+.|+|+-. +++....|..+| .+- ++...
T Consensus 66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~-~~~~~ 143 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTY-KIVNE 143 (313)
T ss_pred chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEeccc-ceeeh
Confidence 456677776 44555 566777788888 5555443333333334 57778888644 445445566666 221 11111
Q ss_pred ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCce--EEEEeCCCCeEEEeecCCCCcceEEEccCCC
Q 017317 153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGK--LLKYDPSLNETSILLDSLFFANGVALSKDED 230 (373)
Q Consensus 153 ~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~--l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~ 230 (373)
. ......+.+...-++.++|.+.+ .|. |+.|- .-+.++.+.....+.-.|.|+|+|+
T Consensus 144 ~---~~~~e~ne~~w~~~nd~Fflt~G-----------------lG~v~ILsyp-sLkpv~si~AH~snCicI~f~p~Gr 202 (313)
T KOG1407|consen 144 E---QFKFEVNEISWNNSNDLFFLTNG-----------------LGCVEILSYP-SLKPVQSIKAHPSNCICIEFDPDGR 202 (313)
T ss_pred h---cccceeeeeeecCCCCEEEEecC-----------------CceEEEEecc-ccccccccccCCcceEEEEECCCCc
Confidence 1 11235677788777888887643 243 34442 2222222222223344688999998
Q ss_pred EEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317 231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL 282 (373)
Q Consensus 231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~ 282 (373)
++-+.. ...-+..+|++.- --.+.+. .+.--.+-+.+..||++.....
T Consensus 203 yfA~Gs-ADAlvSLWD~~EL--iC~R~is-RldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 203 YFATGS-ADALVSLWDVDEL--ICERCIS-RLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred eEeecc-ccceeeccChhHh--hhheeec-cccCceEEEEeccCcceeeccC
Confidence 554442 3334444444321 1112221 2222234567788887766543
No 213
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=93.51 E-value=4.9 Score=35.26 Aligned_cols=214 Identities=11% Similarity=0.125 Sum_probs=112.9
Q ss_pred cCCcceEEEecCCCEE-EEecCCeEEEEEcCC-ceEEe---eeecCccccCeEECCCC-cEE-EEECCCcEEEEe-cCC-
Q 017317 76 LNGPEDVCVDRNGVLY-TATRDGWIKRLHKNG-TWENW---KLIGGDTLLGITTTQEN-EIL-VCDADKGLLKVT-EEG- 146 (373)
Q Consensus 76 ~~~P~~ia~d~~G~l~-v~~~~g~I~~~~~~g-~~~~~---~~~~~~p~~gl~~d~~g-~L~-va~~~~gl~~~~-~~g- 146 (373)
...-.+|+...+|.=. .|+.++.+..++.++ ++..- ....+... .+++++.. .++ .+..++.+.++| ..+
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svd-ql~w~~~~~d~~atas~dk~ir~wd~r~~k 98 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVD-QLCWDPKHPDLFATASGDKTIRIWDIRSGK 98 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchh-hheeCCCCCcceEEecCCceEEEEEeccCc
Confidence 4556778888877655 566777777766332 22111 11112334 67777544 444 455556677788 555
Q ss_pred -cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEE
Q 017317 147 -VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA 224 (373)
Q Consensus 147 -~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~ 224 (373)
...+.. .+ .-.-++..|+|. +-+++- ...|--+|..+.+...-..-..+.|-++
T Consensus 99 ~~~~i~~--~~----eni~i~wsp~g~~~~~~~k------------------dD~it~id~r~~~~~~~~~~~~e~ne~~ 154 (313)
T KOG1407|consen 99 CTARIET--KG----ENINITWSPDGEYIAVGNK------------------DDRITFIDARTYKIVNEEQFKFEVNEIS 154 (313)
T ss_pred EEEEeec--cC----cceEEEEcCCCCEEEEecC------------------cccEEEEEecccceeehhcccceeeeee
Confidence 222221 11 112457778774 444432 2466677765444333233344567888
Q ss_pred EccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCc---eeECCCCCEEEE-EecCCCchhhhccCChHHHH
Q 017317 225 LSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDN---IKLAPDGSFWIA-ILQLSSPGLEFVHTSKATKH 300 (373)
Q Consensus 225 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~---i~~d~dG~lwva-~~~~~~~~~~~~~~~p~~~~ 300 (373)
+.-+++ +++.+++.+.|..+... .+.... .+...|.| |.+|++|+++.. ......++||. ..
T Consensus 155 w~~~nd-~Fflt~GlG~v~ILsyp--sLkpv~----si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~-------~E 220 (313)
T KOG1407|consen 155 WNNSND-LFFLTNGLGCVEILSYP--SLKPVQ----SIKAHPSNCICIEFDPDGRYFATGSADALVSLWDV-------DE 220 (313)
T ss_pred ecCCCC-EEEEecCCceEEEEecc--cccccc----ccccCCcceEEEEECCCCceEeeccccceeeccCh-------hH
Confidence 887776 88887777776655422 222211 22334444 668999986654 33344444443 22
Q ss_pred HH-HhcchhhhhccCCCccEEEEEECCCCcEEEEE
Q 017317 301 LL-AAFPKLIKLVAPLHKKAAVVNVAANGIVIRKF 334 (373)
Q Consensus 301 ~~-~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~ 334 (373)
++ .+.-.++++. ...+.|+-+|+.+.+-
T Consensus 221 LiC~R~isRldwp------VRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 221 LICERCISRLDWP------VRTLSFSHDGRMLASA 249 (313)
T ss_pred hhhheeeccccCc------eEEEEeccCcceeecc
Confidence 22 1222222210 2346777788887753
No 214
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=93.50 E-value=2.6 Score=38.57 Aligned_cols=140 Identities=12% Similarity=0.148 Sum_probs=81.0
Q ss_pred EEEec-CCCEEEEecCCeEEEEE-cCCce-EEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC--cEEEeeccC
Q 017317 82 VCVDR-NGVLYTATRDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASHVN 155 (373)
Q Consensus 82 ia~d~-~G~l~v~~~~g~I~~~~-~~g~~-~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g--~~~l~~~~~ 155 (373)
+...+ ++.++.++.++.|..+| ..|+. ........... .++.+|+..+++......+-.++ +.| .+.+.
T Consensus 283 V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvr-al~lhP~e~~fASas~dnik~w~~p~g~f~~nls---- 357 (460)
T KOG0285|consen 283 VMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVR-ALCLHPKENLFASASPDNIKQWKLPEGEFLQNLS---- 357 (460)
T ss_pred EEeecCCCceEEecCCceEEEeeeccCceeEeeecccceee-EEecCCchhhhhccCCccceeccCCccchhhccc----
Confidence 44444 88999999999999999 55642 22222223345 77888887887765545566666 666 23221
Q ss_pred CccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc---------ceEEEc
Q 017317 156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA---------NGVALS 226 (373)
Q Consensus 156 ~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~---------~gi~~~ 226 (373)
+ ....+|.|++..||.+..+. .+|.++.+|-+++-.-+.......| ...+|+
T Consensus 358 g-h~~iintl~~nsD~v~~~G~------------------dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD 418 (460)
T KOG0285|consen 358 G-HNAIINTLSVNSDGVLVSGG------------------DNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD 418 (460)
T ss_pred c-ccceeeeeeeccCceEEEcC------------------CceEEEEEecCcCcccccccccccCCccccccceeEEeec
Confidence 1 12246788888777665543 3578888887655322111111111 234677
Q ss_pred cCCCEEEEEeCCCCeEEEEE
Q 017317 227 KDEDYLVVCETFKFRCLKYW 246 (373)
Q Consensus 227 ~dg~~l~v~~~~~~~i~~~~ 246 (373)
..|..|+-++. +..|..|.
T Consensus 419 ktg~rlit~ea-dKtIk~~k 437 (460)
T KOG0285|consen 419 KTGSRLITGEA-DKTIKMYK 437 (460)
T ss_pred ccCceEEeccC-CcceEEEe
Confidence 77776666654 33454444
No 215
>PHA02713 hypothetical protein; Provisional
Probab=93.47 E-value=4.4 Score=40.47 Aligned_cols=155 Identities=12% Similarity=0.083 Sum_probs=72.1
Q ss_pred CCCEEE-EecC------CeEEEEEc-CCceEEeeeec-CccccCeEECCCCcEEEEECCC------cEEEEe-cCC-cEE
Q 017317 87 NGVLYT-ATRD------GWIKRLHK-NGTWENWKLIG-GDTLLGITTTQENEILVCDADK------GLLKVT-EEG-VTV 149 (373)
Q Consensus 87 ~G~l~v-~~~~------g~I~~~~~-~g~~~~~~~~~-~~p~~gl~~d~~g~L~va~~~~------gl~~~~-~~g-~~~ 149 (373)
+|.||+ |..+ ..+.++++ .+.+....... .+...+++. -+|+||+..... .+.++| .+. .+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE-ECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 788995 4322 34678884 34454433221 111113333 368999864321 256677 344 444
Q ss_pred EeeccCCccccccceeEEcCCCcEEEEeCCccccc---ccccccc--c-cccCCceEEEEeCCCCeEEEeecC--CCCcc
Q 017317 150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGL---HNWGLDL--L-EAKPHGKLLKYDPSLNETSILLDS--LFFAN 221 (373)
Q Consensus 150 l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~---~~~~~~~--~-~~~~~g~l~~~d~~~~~~~~~~~~--~~~~~ 221 (373)
+..- +. +.... + +..-+|.||+..+...... ......+ . .......+.+|||.+.+++.+..- .....
T Consensus 382 ~~~m-p~-~r~~~-~-~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~ 457 (557)
T PHA02713 382 LPDM-PI-ALSSY-G-MCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP 457 (557)
T ss_pred CCCC-Cc-ccccc-c-EEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC
Confidence 3221 11 11111 2 2234789999754311000 0000000 0 001135699999999888765431 11122
Q ss_pred eEEEccCCCEEEEEeCCC------CeEEEEEec
Q 017317 222 GVALSKDEDYLVVCETFK------FRCLKYWLK 248 (373)
Q Consensus 222 gi~~~~dg~~l~v~~~~~------~~i~~~~~~ 248 (373)
+++.. ++ .+|+....+ ..+.+||..
T Consensus 458 ~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~ 488 (557)
T PHA02713 458 GVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTN 488 (557)
T ss_pred cEEEE-CC-EEEEEeCCCCCCccceeEEEecCC
Confidence 33322 34 489885432 246788854
No 216
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.34 E-value=6.5 Score=37.31 Aligned_cols=140 Identities=14% Similarity=0.067 Sum_probs=80.3
Q ss_pred CcceEEEec-CCCEE-EEecCCeEEEEEc-CCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCCcEEEeec
Q 017317 78 GPEDVCVDR-NGVLY-TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEGVTVLASH 153 (373)
Q Consensus 78 ~P~~ia~d~-~G~l~-v~~~~g~I~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g~~~l~~~ 153 (373)
.-++.++.+ ++.+. .|+.+|.|..+|. .-.........+.|.-.+.+-+.|.+++.-.+..+-.+| -+|-+.+...
T Consensus 155 YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 155 YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred eeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhh
Confidence 345566666 45455 7789999999982 211333344456665466777888888876555566667 4453333221
Q ss_pred cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEE
Q 017317 154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYL 232 (373)
Q Consensus 154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~~dg~~l 232 (373)
.. -...+..|....+++=.++.+ -.+.+-.||..+-++.. ....+.| -.+++++|++.+
T Consensus 235 ~~--H~KtVTcL~l~s~~~rLlS~s-----------------LD~~VKVfd~t~~Kvv~-s~~~~~pvLsiavs~dd~t~ 294 (487)
T KOG0310|consen 235 FN--HNKTVTCLRLASDSTRLLSGS-----------------LDRHVKVFDTTNYKVVH-SWKYPGPVLSIAVSPDDQTV 294 (487)
T ss_pred hc--ccceEEEEEeecCCceEeecc-----------------cccceEEEEccceEEEE-eeecccceeeEEecCCCceE
Confidence 11 123567888888874334432 23667777754333322 1122222 368899999877
Q ss_pred EEEeC
Q 017317 233 VVCET 237 (373)
Q Consensus 233 ~v~~~ 237 (373)
++.-+
T Consensus 295 viGms 299 (487)
T KOG0310|consen 295 VIGMS 299 (487)
T ss_pred EEecc
Confidence 76643
No 217
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.21 E-value=9 Score=38.41 Aligned_cols=143 Identities=16% Similarity=0.208 Sum_probs=74.6
Q ss_pred CCCEE-EEecC------CeEEEEEc-CCceEEeeeecC-c-cccCeEECCCCcEEEEECCC------cEEEEec-CC-cE
Q 017317 87 NGVLY-TATRD------GWIKRLHK-NGTWENWKLIGG-D-TLLGITTTQENEILVCDADK------GLLKVTE-EG-VT 148 (373)
Q Consensus 87 ~G~l~-v~~~~------g~I~~~~~-~g~~~~~~~~~~-~-p~~gl~~d~~g~L~va~~~~------gl~~~~~-~g-~~ 148 (373)
+|.|| +|..+ ..+.++|+ .+++...+.... + -. |++. -+|.||+..... .+-++|+ +. .+
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~ 409 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWT 409 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEE-ECCEEEEEeccccccccccEEEecCCCCccc
Confidence 67899 55544 34577774 345555433221 1 23 5554 368899864322 3556663 33 44
Q ss_pred EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC--CCCcceEEEc
Q 017317 149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALS 226 (373)
Q Consensus 149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~~gi~~~ 226 (373)
..+.-.. ...-.++ ..-+|.||+..+.... ...-..+.+|||.+++++....- -..-.|++..
T Consensus 410 ~va~m~~---~r~~~gv-~~~~g~iYi~GG~~~~-----------~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~ 474 (571)
T KOG4441|consen 410 PVAPMLT---RRSGHGV-AVLGGKLYIIGGGDGS-----------SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL 474 (571)
T ss_pred ccCCCCc---ceeeeEE-EEECCEEEEEcCcCCC-----------ccccceEEEEcCCCCceeecCCcccccccceEEEE
Confidence 4432111 0111122 2247999998653100 01235799999999988875432 1222344433
Q ss_pred cCCCEEEEEeCCC-----CeEEEEEec
Q 017317 227 KDEDYLVVCETFK-----FRCLKYWLK 248 (373)
Q Consensus 227 ~dg~~l~v~~~~~-----~~i~~~~~~ 248 (373)
++.||+....+ ..+.+||..
T Consensus 475 --~~~iYvvGG~~~~~~~~~VE~ydp~ 499 (571)
T KOG4441|consen 475 --NGKIYVVGGFDGTSALSSVERYDPE 499 (571)
T ss_pred --CCEEEEECCccCCCccceEEEEcCC
Confidence 33588876533 236778744
No 218
>PHA02713 hypothetical protein; Provisional
Probab=93.13 E-value=10 Score=37.90 Aligned_cols=119 Identities=17% Similarity=0.183 Sum_probs=58.0
Q ss_pred eEEEEE-cCCceEEeeeecCcc--ccCeEECCCCcEEEEECC-------CcEEEEe-cCC-cEEEeeccCCcccccccee
Q 017317 98 WIKRLH-KNGTWENWKLIGGDT--LLGITTTQENEILVCDAD-------KGLLKVT-EEG-VTVLASHVNGSRINLADDL 165 (373)
Q Consensus 98 ~I~~~~-~~g~~~~~~~~~~~p--~~gl~~d~~g~L~va~~~-------~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l 165 (373)
.+.+++ ..+++......+... . +.+. -++.|||.... ..+.++| .+. ...+..- . ......-
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~-~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m-~---~~R~~~~ 346 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINY-ASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM-I---KNRCRFS 346 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccce-EEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC-c---chhhcee
Confidence 456777 344555443322211 2 3333 36789986431 1266777 444 4433221 1 1111112
Q ss_pred EEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc---ceEEEccCCCEEEEEeC
Q 017317 166 IAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA---NGVALSKDEDYLVVCET 237 (373)
Q Consensus 166 ~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~---~gi~~~~dg~~l~v~~~ 237 (373)
+..-+|.||+..+.. .......+.+||+.++++..+.. ...+ .+.+. -+| .+|+...
T Consensus 347 ~~~~~g~IYviGG~~------------~~~~~~sve~Ydp~~~~W~~~~~-mp~~r~~~~~~~-~~g-~IYviGG 406 (557)
T PHA02713 347 LAVIDDTIYAIGGQN------------GTNVERTIECYTMGDDKWKMLPD-MPIALSSYGMCV-LDQ-YIYIIGG 406 (557)
T ss_pred EEEECCEEEEECCcC------------CCCCCceEEEEECCCCeEEECCC-CCcccccccEEE-ECC-EEEEEeC
Confidence 233478999875431 00112468999999888776432 2221 12222 244 4888753
No 219
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=93.07 E-value=8.1 Score=36.53 Aligned_cols=190 Identities=14% Similarity=0.120 Sum_probs=97.1
Q ss_pred ceEEEecCCCEEEEe-cCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCc-EEEEe--------cCC-c
Q 017317 80 EDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKG-LLKVT--------EEG-V 147 (373)
Q Consensus 80 ~~ia~d~~G~l~v~~-~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~g-l~~~~--------~~g-~ 147 (373)
.+++.++.|...++. ..|.||.|. ..|..-.+....-++..-|.+..||..++.....| ++.+. +++ .
T Consensus 85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~ 164 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSV 164 (476)
T ss_pred eeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCc
Confidence 346667788877655 889999998 67754322221122222677777887777644433 33332 111 1
Q ss_pred EEEeeccCCccccccceeEEcCCC---cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEE
Q 017317 148 TVLASHVNGSRINLADDLIAATDG---SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA 224 (373)
Q Consensus 148 ~~l~~~~~~~~~~~~~~l~~~~dG---~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~ 224 (373)
..+.. ..+.. ..+.++.++..| ++|-+.. ...+-.+|...+..-.-..-....+.++
T Consensus 165 ~p~~~-f~~Ht-lsITDl~ig~Gg~~~rl~TaS~------------------D~t~k~wdlS~g~LLlti~fp~si~av~ 224 (476)
T KOG0646|consen 165 KPLHI-FSDHT-LSITDLQIGSGGTNARLYTASE------------------DRTIKLWDLSLGVLLLTITFPSSIKAVA 224 (476)
T ss_pred cceee-eccCc-ceeEEEEecCCCccceEEEecC------------------CceEEEEEeccceeeEEEecCCcceeEE
Confidence 11110 11111 135566666543 4444322 2344455555554322222234467899
Q ss_pred EccCCCEEEEEeCCCCeEEEEEecC---CCC-----------cceeEEecCCC-CCCCceeECCCCCEEEEEe-cCCCch
Q 017317 225 LSKDEDYLVVCETFKFRCLKYWLKG---ESK-----------EQTEIFVENLP-GGPDNIKLAPDGSFWIAIL-QLSSPG 288 (373)
Q Consensus 225 ~~~dg~~l~v~~~~~~~i~~~~~~~---~~~-----------~~~~~~~~~~~-g~p~~i~~d~dG~lwva~~-~~~~~~ 288 (373)
+||-++.+|+.. ..+.|+..++.+ ... .+...+..... .-...+++.-||++.+... .+...+
T Consensus 225 lDpae~~~yiGt-~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vcv 303 (476)
T KOG0646|consen 225 LDPAERVVYIGT-EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCV 303 (476)
T ss_pred EcccccEEEecC-CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEE
Confidence 999999777775 456777766532 111 01111211111 1244578888998776543 343344
Q ss_pred hh
Q 017317 289 LE 290 (373)
Q Consensus 289 ~~ 290 (373)
|+
T Consensus 304 Wd 305 (476)
T KOG0646|consen 304 WD 305 (476)
T ss_pred Ee
Confidence 44
No 220
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.02 E-value=3.1 Score=39.96 Aligned_cols=75 Identities=19% Similarity=0.143 Sum_probs=48.2
Q ss_pred ceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCC
Q 017317 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK--FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG 275 (373)
Q Consensus 198 g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG 275 (373)
.++++++.++++...+..-.......+|+|||+.+.++...+ ..|+.+++.+....+ ..+..+.-..=.+.+||
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG 293 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDG 293 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCC
Confidence 468999988887777665334445578999999999887654 457777777654222 22223333334456888
Q ss_pred C
Q 017317 276 S 276 (373)
Q Consensus 276 ~ 276 (373)
.
T Consensus 294 ~ 294 (425)
T COG0823 294 S 294 (425)
T ss_pred C
Confidence 5
No 221
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=93.02 E-value=2.8 Score=39.62 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=24.7
Q ss_pred CCcceEEEecCCCEE-EEecCCeEEEEE-cCCce
Q 017317 77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTW 108 (373)
Q Consensus 77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~ 108 (373)
.+|..+-+..+|+-. +|...|-|-.+| .+++.
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L 163 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL 163 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeeccccee
Confidence 678889888888755 788889998888 55543
No 222
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=93.01 E-value=2.7 Score=43.60 Aligned_cols=98 Identities=15% Similarity=0.048 Sum_probs=57.2
Q ss_pred cceEEEecCCCEEE-EecCCeEEEEE-cCC-ceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe---cCC-cEEEe
Q 017317 79 PEDVCVDRNGVLYT-ATRDGWIKRLH-KNG-TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT---EEG-VTVLA 151 (373)
Q Consensus 79 P~~ia~d~~G~l~v-~~~~g~I~~~~-~~g-~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~---~~g-~~~l~ 151 (373)
-.++..+|++.+.+ .+.++.|+.++ ... ..+++....+.+. |+.+||-|+.+......+.+++- .-| .+.+.
T Consensus 132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VK-Gvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It 210 (942)
T KOG0973|consen 132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVK-GVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSIT 210 (942)
T ss_pred cceeccCCCccEEEEecccceEEEEccccceeeeeeeccccccc-ceEECCccCeeeeecCCceEEEEEcccceeeEeec
Confidence 34577788888875 44788999998 332 2334444455667 99999999988875554444433 234 23222
Q ss_pred eccCC-ccccccceeEEcCCCcEEEEe
Q 017317 152 SHVNG-SRINLADDLIAATDGSIYFSV 177 (373)
Q Consensus 152 ~~~~~-~~~~~~~~l~~~~dG~l~v~~ 177 (373)
..... ..-.+...+...|||....+.
T Consensus 211 ~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 211 KPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred cchhhCCCcceeeecccCCCcCeecch
Confidence 21111 111233456677888766653
No 223
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.00 E-value=8.5 Score=36.58 Aligned_cols=144 Identities=16% Similarity=0.193 Sum_probs=78.9
Q ss_pred CeEECCCCcEEEEECCCcEEEE-e-cCC--cEEEeeccCCccccccceeEEcCCC-cEEEEeCCcccccccccccccccc
Q 017317 121 GITTTQENEILVCDADKGLLKV-T-EEG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAK 195 (373)
Q Consensus 121 gl~~d~~g~L~va~~~~gl~~~-~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~ 195 (373)
++.|-.||+|..|....|.+++ | .+. ++.+... ...++-+.+.+++ .++++.+.
T Consensus 73 s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah-----~apv~~~~f~~~d~t~l~s~sD---------------- 131 (487)
T KOG0310|consen 73 SVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAH-----QAPVHVTKFSPQDNTMLVSGSD---------------- 131 (487)
T ss_pred EEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhc-----cCceeEEEecccCCeEEEecCC----------------
Confidence 8888899999987545565554 4 332 2222111 1123445666665 45554332
Q ss_pred CCceEEE-EeCCCCeEEEeecC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCC-CceeEC
Q 017317 196 PHGKLLK-YDPSLNETSILLDS-LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGP-DNIKLA 272 (373)
Q Consensus 196 ~~g~l~~-~d~~~~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p-~~i~~d 272 (373)
.++.+ +|.++..++.-..+ -..-...+++|..++++++...++.|..||..... .++. +-..|.| ..+..=
T Consensus 132 --d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~-elnhg~pVe~vl~l 205 (487)
T KOG0310|consen 132 --DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVV-ELNHGCPVESVLAL 205 (487)
T ss_pred --CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC---ceeE-EecCCCceeeEEEc
Confidence 33333 44454443211111 12234567888888899999999999999854322 1111 1223433 556666
Q ss_pred CCCCEEEEEecCCCchhhh
Q 017317 273 PDGSFWIAILQLSSPGLEF 291 (373)
Q Consensus 273 ~dG~lwva~~~~~~~~~~~ 291 (373)
+.|.+.++..++....||.
T Consensus 206 psgs~iasAgGn~vkVWDl 224 (487)
T KOG0310|consen 206 PSGSLIASAGGNSVKVWDL 224 (487)
T ss_pred CCCCEEEEcCCCeEEEEEe
Confidence 7888877766653344443
No 224
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.96 E-value=0.56 Score=28.29 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=28.4
Q ss_pred CC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEc
Q 017317 170 DG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS 226 (373)
Q Consensus 170 dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~ 226 (373)
+| +||+++.. .+.|..+|..+++..........|.+++++
T Consensus 2 d~~~lyv~~~~-----------------~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSG-----------------SNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCC-----------------CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 44 69998753 468999998877665544445778888764
No 225
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.92 E-value=1.9 Score=42.61 Aligned_cols=65 Identities=20% Similarity=0.187 Sum_probs=43.5
Q ss_pred ccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEE-EeecCCCCcceEEEccCCCEEEEEe
Q 017317 159 INLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFANGVALSKDEDYLVVCE 236 (373)
Q Consensus 159 ~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~~~~~~~~gi~~~~dg~~l~v~~ 236 (373)
.+.++++++.|||. +.++.. .+++.||+..|..- .+...-...+-++++.||+ ++.+.
T Consensus 12 ~hci~d~afkPDGsqL~lAAg-------------------~rlliyD~ndG~llqtLKgHKDtVycVAys~dGk-rFASG 71 (1081)
T KOG1538|consen 12 EHCINDIAFKPDGTQLILAAG-------------------SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK-RFASG 71 (1081)
T ss_pred ccchheeEECCCCceEEEecC-------------------CEEEEEeCCCcccccccccccceEEEEEEccCCc-eeccC
Confidence 45789999999995 666543 48999999866533 3333334457899999998 66555
Q ss_pred CCCCeEE
Q 017317 237 TFKFRCL 243 (373)
Q Consensus 237 ~~~~~i~ 243 (373)
..+..+.
T Consensus 72 ~aDK~VI 78 (1081)
T KOG1538|consen 72 SADKSVI 78 (1081)
T ss_pred CCceeEE
Confidence 4443333
No 226
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=4.2 Score=34.52 Aligned_cols=150 Identities=17% Similarity=0.126 Sum_probs=84.4
Q ss_pred cceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE---eecCCCCcceEEEccCCCEEEEEeCC
Q 017317 162 ADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI---LLDSLFFANGVALSKDEDYLVVCETF 238 (373)
Q Consensus 162 ~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~---~~~~~~~~~gi~~~~dg~~l~v~~~~ 238 (373)
..++..+ +|.++.+++. | +...|.++|..+++... +.....+..|+.-. |+.+|.-...
T Consensus 48 TQGL~~~-~g~i~esTG~--y-------------g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~ 109 (262)
T COG3823 48 TQGLEYL-DGHILESTGL--Y-------------GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWK 109 (262)
T ss_pred hcceeee-CCEEEEeccc--c-------------ccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEec
Confidence 3455554 5688888654 2 23578888888776543 22123344566544 4568888777
Q ss_pred CCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCcc
Q 017317 239 KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKK 318 (373)
Q Consensus 239 ~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 318 (373)
...-++||.+.- .....+. .+|--.+++.|.+ +||++....
T Consensus 110 egvaf~~d~~t~--~~lg~~~--y~GeGWgLt~d~~-~LimsdGsa---------------------------------- 150 (262)
T COG3823 110 EGVAFKYDADTL--EELGRFS--YEGEGWGLTSDDK-NLIMSDGSA---------------------------------- 150 (262)
T ss_pred cceeEEEChHHh--hhhcccc--cCCcceeeecCCc-ceEeeCCce----------------------------------
Confidence 777778875432 2222221 2333456666533 688886443
Q ss_pred EEEEEECCC-----CcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCCC
Q 017317 319 AAVVNVAAN-----GIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA 372 (373)
Q Consensus 319 g~v~~~~~~-----g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~~ 372 (373)
.+...||+ +++... .+|.+......+...+|.||..-+-.++|.|+++++
T Consensus 151 -tL~frdP~tfa~~~~v~VT---~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~s 205 (262)
T COG3823 151 -TLQFRDPKTFAELDTVQVT---DDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDS 205 (262)
T ss_pred -EEEecCHHHhhhcceEEEE---ECCeecccccceeeeccEEEEeeeeecceEEEcCCC
Confidence 12222332 222221 234444445556666788888777888899988764
No 227
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=92.74 E-value=7.9 Score=35.54 Aligned_cols=68 Identities=9% Similarity=-0.054 Sum_probs=38.9
Q ss_pred cceEEEecCCCEE-EEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcE-EEEECCCcEEEEe-cCC
Q 017317 79 PEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEI-LVCDADKGLLKVT-EEG 146 (373)
Q Consensus 79 P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L-~va~~~~gl~~~~-~~g 146 (373)
-+-+...|.+.++ +|+.+|.++.+. +++....+....+.+...=.+-++|+. ..+.....|..++ .+|
T Consensus 151 ieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 151 IEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTG 222 (399)
T ss_pred eEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCC
Confidence 3446666766666 778899999888 443333333223333212234578864 4454444566777 677
No 228
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=92.73 E-value=6.4 Score=38.11 Aligned_cols=132 Identities=11% Similarity=0.089 Sum_probs=71.8
Q ss_pred eEEEEEcCCceEEeeeecCccccCeEECCCCcEEEEECC---CcEEEEecCCcEEEeeccCCccccccceeEEcCCCcEE
Q 017317 98 WIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDAD---KGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIY 174 (373)
Q Consensus 98 ~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~---~gl~~~~~~g~~~l~~~~~~~~~~~~~~l~~~~dG~l~ 174 (373)
.++.++.+|.-..+......|+....+.++|+=+.+.++ ..+-.+|..+ .++.+...| .-|.+.+.|.|+|.
T Consensus 252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~eg----pRN~~~fnp~g~ii 326 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFPEG----PRNTAFFNPHGNII 326 (566)
T ss_pred eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCCCC----CccceEECCCCCEE
Confidence 455565445443343333444448888888865544332 2344454333 122222222 23678899999876
Q ss_pred EEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEeCC-----CCeEEEEEec
Q 017317 175 FSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVCETF-----KFRCLKYWLK 248 (373)
Q Consensus 175 v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~-----~~~i~~~~~~ 248 (373)
+-.+- ++-.|.+-.+|..+.+ .+. -......-..|+|||++++.+.+. ++++..|+..
T Consensus 327 ~lAGF--------------GNL~G~mEvwDv~n~K--~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 327 LLAGF--------------GNLPGDMEVWDVPNRK--LIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred EEeec--------------CCCCCceEEEeccchh--hccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 54331 1234667777765422 111 112344567899999999988875 3445556555
Q ss_pred CC
Q 017317 249 GE 250 (373)
Q Consensus 249 ~~ 250 (373)
|.
T Consensus 391 G~ 392 (566)
T KOG2315|consen 391 GS 392 (566)
T ss_pred Cc
Confidence 64
No 229
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=92.46 E-value=8.8 Score=35.43 Aligned_cols=153 Identities=14% Similarity=0.196 Sum_probs=98.7
Q ss_pred CCcCCcceEEEecCCCEE-EEecCCeEEEEE-cCC---ceEEee----------------------eecCccccCeEECC
Q 017317 74 GILNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNG---TWENWK----------------------LIGGDTLLGITTTQ 126 (373)
Q Consensus 74 g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g---~~~~~~----------------------~~~~~p~~gl~~d~ 126 (373)
|--..-++|.++++|..+ .|+.+..|-.++ ... ..+... .....++..+.+.+
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d 270 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD 270 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence 444567889999988887 577888777666 110 011000 00011222667777
Q ss_pred CCcEEEEECCCcEEEEe-cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEE
Q 017317 127 ENEILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY 203 (373)
Q Consensus 127 ~g~L~va~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 203 (373)
.+.+|-+...+.|..+| ..| ...+... ...+.+...+.-++.++.++ ...+..+
T Consensus 271 ~~v~yS~SwDHTIk~WDletg~~~~~~~~~------ksl~~i~~~~~~~Ll~~gss-----------------dr~irl~ 327 (423)
T KOG0313|consen 271 ATVIYSVSWDHTIKVWDLETGGLKSTLTTN------KSLNCISYSPLSKLLASGSS-----------------DRHIRLW 327 (423)
T ss_pred CCceEeecccceEEEEEeecccceeeeecC------cceeEeecccccceeeecCC-----------------CCceeec
Confidence 77889888888899999 655 3333221 23567777777778777554 2346678
Q ss_pred eCCCCeEEE----eecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317 204 DPSLNETSI----LLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG 249 (373)
Q Consensus 204 d~~~~~~~~----~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~ 249 (373)
||.++.-.. +........++.++|...+++++-+.++.+..+|+..
T Consensus 328 DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 328 DPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred CCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence 988764332 2233345678999999999999999999888888654
No 230
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=92.45 E-value=0.49 Score=28.94 Aligned_cols=40 Identities=10% Similarity=0.021 Sum_probs=29.9
Q ss_pred EEEEEeCCCC-eEEEEEecCCCCcceeEEecCCCCCCCceeECC
Q 017317 231 YLVVCETFKF-RCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP 273 (373)
Q Consensus 231 ~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~ 273 (373)
.|||++.... .|.+-+++|.. .+.+....-..|.+|++|.
T Consensus 2 ~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDGSN---RRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETTTTEEEEEEETTSTS---EEEEEESSTSSEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCCCC---eEEEEECCCCCcCEEEECC
Confidence 5999999999 99999988753 3344434445799999874
No 231
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=92.35 E-value=6.2 Score=38.44 Aligned_cols=113 Identities=19% Similarity=0.318 Sum_probs=63.8
Q ss_pred EEEec-CCCEEEEecCCeEEEEE-cCCceE-EeeeecCccccCeEECCCCcEEEEECCCcEE-EEe-cCC--cEEEe--e
Q 017317 82 VCVDR-NGVLYTATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCDADKGLL-KVT-EEG--VTVLA--S 152 (373)
Q Consensus 82 ia~d~-~G~l~v~~~~g~I~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~-~~~-~~g--~~~l~--~ 152 (373)
+.++. .=.||++.....|+|++ ..|++- .+....+..+ .+.+.+-..|+++....|.+ .+| .+. ...+- .
T Consensus 139 m~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN-~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 139 MKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELN-VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred ccccCCCccEEEeecCcceEEEEccccccccccccccccce-eeeecCccceEEecccCceEEEecchhhhhheeeeccc
Confidence 44443 55788766677899999 556643 2322223334 55555555666664444544 455 332 22221 1
Q ss_pred c----cCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe
Q 017317 153 H----VNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL 213 (373)
Q Consensus 153 ~----~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~ 213 (373)
. ..+.....+.++.+..+| .+=|+++ .|.++.||..+.+.-.+
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts------------------~G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTS------------------TGSVLIYDLRASKPLLV 265 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEeecc------------------CCcEEEEEcccCCceee
Confidence 1 122233457788888777 5666654 48999999876654443
No 232
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.24 E-value=8.5 Score=34.75 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=24.0
Q ss_pred CCcCCcceEEEecCCCEEEEe-cCCeEEEEEc
Q 017317 74 GILNGPEDVCVDRNGVLYTAT-RDGWIKRLHK 104 (373)
Q Consensus 74 g~~~~P~~ia~d~~G~l~v~~-~~g~I~~~~~ 104 (373)
..+..|++|++.|.|-+||++ ..+..-.++.
T Consensus 20 p~L~N~WGia~~p~~~~WVadngT~~~TlYdg 51 (336)
T TIGR03118 20 PGLRNAWGLSYRPGGPFWVANTGTGTATLYVG 51 (336)
T ss_pred ccccccceeEecCCCCEEEecCCcceEEeecC
Confidence 348899999999999999877 4455556663
No 233
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=92.06 E-value=2.3 Score=41.82 Aligned_cols=145 Identities=19% Similarity=0.157 Sum_probs=80.0
Q ss_pred ceEEEec--CCCEEEEecCCeEEEEE--cCCce------EEee-eecCccccCeEECCCC--cEEEEECCCcEEEEe-cC
Q 017317 80 EDVCVDR--NGVLYTATRDGWIKRLH--KNGTW------ENWK-LIGGDTLLGITTTQEN--EILVCDADKGLLKVT-EE 145 (373)
Q Consensus 80 ~~ia~d~--~G~l~v~~~~g~I~~~~--~~g~~------~~~~-~~~~~p~~gl~~d~~g--~L~va~~~~gl~~~~-~~ 145 (373)
.++..|| +.+|-|++.+|.|..+. .+|-. +.+. ....... .|.|++-. -|-++.++..|-.+| .+
T Consensus 631 tDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~-slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 631 TDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT-SLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE-EEEecchhhhHhhhhhccceeeeeehhh
Confidence 4456666 55777888888775554 34421 1111 1122344 77776532 355566555666677 55
Q ss_pred C--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC---CCc
Q 017317 146 G--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL---FFA 220 (373)
Q Consensus 146 g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~---~~~ 220 (373)
+ ...+..+. ..+.+++..+||+...+... .|+|..|+|..+......... ...
T Consensus 710 ~~~~~~l~gHt-----dqIf~~AWSpdGr~~AtVcK-----------------Dg~~rVy~Prs~e~pv~Eg~gpvgtRg 767 (1012)
T KOG1445|consen 710 AKLYSRLVGHT-----DQIFGIAWSPDGRRIATVCK-----------------DGTLRVYEPRSREQPVYEGKGPVGTRG 767 (1012)
T ss_pred hhhhheeccCc-----CceeEEEECCCCcceeeeec-----------------CceEEEeCCCCCCCccccCCCCccCcc
Confidence 4 22222211 24678999999988776543 589999999865433322211 111
Q ss_pred ceEEEccCCCEEEEEeCCC---CeEEEEEe
Q 017317 221 NGVALSKDEDYLVVCETFK---FRCLKYWL 247 (373)
Q Consensus 221 ~gi~~~~dg~~l~v~~~~~---~~i~~~~~ 247 (373)
.-|.|.-||+.++++.... ..|..|+.
T Consensus 768 ARi~wacdgr~viv~Gfdk~SeRQv~~Y~A 797 (1012)
T KOG1445|consen 768 ARILWACDGRIVIVVGFDKSSERQVQMYDA 797 (1012)
T ss_pred eeEEEEecCcEEEEecccccchhhhhhhhh
Confidence 2366777877666654322 23455553
No 234
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=91.96 E-value=8.8 Score=34.41 Aligned_cols=134 Identities=11% Similarity=0.062 Sum_probs=78.9
Q ss_pred CeEECCC-CcEEEEECCCcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCC
Q 017317 121 GITTTQE-NEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH 197 (373)
Q Consensus 121 gl~~d~~-g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~ 197 (373)
.+.+++. +.|.|+...+.+..++ +.- ....... + ..+-+.++.++-.+|+++..
T Consensus 18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~--~---~plL~c~F~d~~~~~~G~~d------------------ 74 (323)
T KOG1036|consen 18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH--G---APLLDCAFADESTIVTGGLD------------------ 74 (323)
T ss_pred eEEEcCcCCcEEEEeccCcEEEEeccchhhhhheec--C---CceeeeeccCCceEEEeccC------------------
Confidence 5666644 4677877655555565 322 2221111 1 12346677777788888653
Q ss_pred ceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-
Q 017317 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS- 276 (373)
Q Consensus 198 g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~- 276 (373)
|.|.++|..++....+.........|...+-.+ .+++..++.+|..+|..... .......+ -.-.++|..|+
T Consensus 75 g~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~----~~~~~d~~--kkVy~~~v~g~~ 147 (323)
T KOG1036|consen 75 GQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKV----VVGTFDQG--KKVYCMDVSGNR 147 (323)
T ss_pred ceEEEEEecCCcceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccc----cccccccC--ceEEEEeccCCE
Confidence 789999998887777665555556677775554 78888888888888754310 01110111 12356677675
Q ss_pred EEEEEecC
Q 017317 277 FWIAILQL 284 (373)
Q Consensus 277 lwva~~~~ 284 (373)
|.|++.+.
T Consensus 148 LvVg~~~r 155 (323)
T KOG1036|consen 148 LVVGTSDR 155 (323)
T ss_pred EEEeecCc
Confidence 66666654
No 235
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=91.86 E-value=0.9 Score=27.77 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=29.7
Q ss_pred CcEEEEeCCccccccccccccccccCCc-eEEEEeCCCCeEE-EeecCCCCcceEEEcc
Q 017317 171 GSIYFSVASTKFGLHNWGLDLLEAKPHG-KLLKYDPSLNETS-ILLDSLFFANGVALSK 227 (373)
Q Consensus 171 G~l~v~~~~~~~~~~~~~~~~~~~~~~g-~l~~~d~~~~~~~-~~~~~~~~~~gi~~~~ 227 (373)
|+||.+|.+ .. .|.+.+.++...+ .+...+..|+||++++
T Consensus 1 ~~iYWtD~~-----------------~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWS-----------------QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETT-----------------TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECC-----------------CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 578999875 24 7888887766544 4566799999999874
No 236
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.83 E-value=18 Score=37.60 Aligned_cols=123 Identities=11% Similarity=0.075 Sum_probs=64.1
Q ss_pred CCCEEEEecCCeEEEEE-cCCceEE-eee--------e-cCcc------ccCeEECCCCcEEEEEC----------CCcE
Q 017317 87 NGVLYTATRDGWIKRLH-KNGTWEN-WKL--------I-GGDT------LLGITTTQENEILVCDA----------DKGL 139 (373)
Q Consensus 87 ~G~l~v~~~~g~I~~~~-~~g~~~~-~~~--------~-~~~p------~~gl~~d~~g~L~va~~----------~~gl 139 (373)
+++||+++.+++++.+| .+|+... +.. . ...+ ...-.+ .++.++++.. ...|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V-~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLV-AGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEE-ECCEEEEEecccccccccCCCcEE
Confidence 45899999999999999 6676432 110 0 0001 101122 2567888632 1236
Q ss_pred EEEe-cCC-cEEEeecc---------CCccc--ccc---ceeEEcCC-CcEEEEeCCcccccccccc---ccccccCCce
Q 017317 140 LKVT-EEG-VTVLASHV---------NGSRI--NLA---DDLIAATD-GSIYFSVASTKFGLHNWGL---DLLEAKPHGK 199 (373)
Q Consensus 140 ~~~~-~~g-~~~l~~~~---------~~~~~--~~~---~~l~~~~d-G~l~v~~~~~~~~~~~~~~---~~~~~~~~g~ 199 (373)
..+| .+| ...-.... .+... ..+ ..++.|++ |.+|+..++.. .++.. ........+.
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~---pd~~g~~r~~~~n~y~~s 415 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQT---PDQWGGDRTPADEKYSSS 415 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCcc---ccccCCccccCcccccce
Confidence 6788 778 43322210 11000 111 34677865 67888654311 11110 1112334678
Q ss_pred EEEEeCCCCeEEEe
Q 017317 200 LLKYDPSLNETSIL 213 (373)
Q Consensus 200 l~~~d~~~~~~~~~ 213 (373)
|+.+|.+||+....
T Consensus 416 lvALD~~TGk~~W~ 429 (764)
T TIGR03074 416 LVALDATTGKERWV 429 (764)
T ss_pred EEEEeCCCCceEEE
Confidence 99999999987643
No 237
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=91.81 E-value=10 Score=36.39 Aligned_cols=72 Identities=15% Similarity=0.115 Sum_probs=48.5
Q ss_pred cceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCC
Q 017317 162 ADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKF 240 (373)
Q Consensus 162 ~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~ 240 (373)
..+|++.|.. .|+++.+. .-+|+.||....+....+.--..-..++|.++|. .+++.+.++
T Consensus 211 ~~gicfspsne~l~vsVG~-----------------Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~-~L~aG~s~G 272 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVGY-----------------DKKINIYDIRSQASTDRLTYSHPLSTVAFSECGT-YLCAGNSKG 272 (673)
T ss_pred cCcceecCCccceEEEecc-----------------cceEEEeecccccccceeeecCCcceeeecCCce-EEEeecCCc
Confidence 4678999876 56666543 3579999976444322222112235799999997 666667788
Q ss_pred eEEEEEecCCC
Q 017317 241 RCLKYWLKGES 251 (373)
Q Consensus 241 ~i~~~~~~~~~ 251 (373)
+|+.||+.+.+
T Consensus 273 ~~i~YD~R~~k 283 (673)
T KOG4378|consen 273 ELIAYDMRSTK 283 (673)
T ss_pred eEEEEecccCC
Confidence 99999987653
No 238
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.56 E-value=16 Score=36.48 Aligned_cols=55 Identities=9% Similarity=0.124 Sum_probs=36.1
Q ss_pred CcceEEEecCCCEEEEecCCeEEEEE-cCCc-eEEeeeecCccccCeEECCCCcEEEE
Q 017317 78 GPEDVCVDRNGVLYTATRDGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQENEILVC 133 (373)
Q Consensus 78 ~P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~-~~~~~~~~~~p~~gl~~d~~g~L~va 133 (373)
.-..+++.|||.-.+-..+.+++.+| .+|. ..+......... .+++..||+++..
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVy-cVAys~dGkrFAS 70 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVY-CVAYAKDGKRFAS 70 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEE-EEEEccCCceecc
Confidence 45678999988766555677899999 4553 233222223344 6778888888765
No 239
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=91.55 E-value=3.4 Score=40.68 Aligned_cols=119 Identities=15% Similarity=0.097 Sum_probs=63.1
Q ss_pred cCccccCeEECCCCcEEEEECCCcEEE-Eec-CCcEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccc
Q 017317 115 GGDTLLGITTTQENEILVCDADKGLLK-VTE-EGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLL 192 (373)
Q Consensus 115 ~~~p~~gl~~d~~g~L~va~~~~gl~~-~~~-~g~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~ 192 (373)
.+... ++++.++|++....-..|-++ +.+ ++.+.+.... |.....-..|.+.-||++.+..+-.+
T Consensus 720 tdqIf-~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~-gpvgtRgARi~wacdgr~viv~Gfdk----------- 786 (1012)
T KOG1445|consen 720 TDQIF-GIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGK-GPVGTRGARILWACDGRIVIVVGFDK----------- 786 (1012)
T ss_pred cCcee-EEEECCCCcceeeeecCceEEEeCCCCCCCccccCC-CCccCcceeEEEEecCcEEEEecccc-----------
Confidence 34567 999999998875533344444 443 4433333221 11112233566777887766543210
Q ss_pred cccCCceEEEEeCCCCeEE----EeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 017317 193 EAKPHGKLLKYDPSLNETS----ILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK 248 (373)
Q Consensus 193 ~~~~~g~l~~~d~~~~~~~----~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 248 (373)
.....|..||.++-... ..++.-..+---.+++|.+.|+++.-++..|+.|.+-
T Consensus 787 --~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 787 --SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred --cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEec
Confidence 11123445554322111 1111112222234678888899998888899999864
No 240
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=91.55 E-value=9.3 Score=33.74 Aligned_cols=148 Identities=17% Similarity=0.191 Sum_probs=87.6
Q ss_pred EeccCCcCCcceEEEecCCCEE-EEecCCeEEEEE-cCCceEEeeee---cCccccCeEECCCCcEEE-EECCCcEEEEe
Q 017317 70 RLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLI---GGDTLLGITTTQENEILV-CDADKGLLKVT 143 (373)
Q Consensus 70 ~~~~g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~~~~---~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~ 143 (373)
.+.++--..-+++|..|.|++. .++.+..+..+. .++.++..... .+... ++++.++|++.. |...+.++.+.
T Consensus 55 vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK-~Vaws~sG~~LATCSRDKSVWiWe 133 (312)
T KOG0645|consen 55 VLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVK-CVAWSASGNYLATCSRDKSVWIWE 133 (312)
T ss_pred eccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccccee-EEEEcCCCCEEEEeeCCCeEEEEE
Confidence 3344445667889999989866 566788777776 45677665432 23345 899999998765 46666676665
Q ss_pred --cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeC-CCCeEEEeecCCC-
Q 017317 144 --EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP-SLNETSILLDSLF- 218 (373)
Q Consensus 144 --~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~-~~~~~~~~~~~~~- 218 (373)
+++ ++...- ..+ ...-+-.+...|.-.|.|+.++. .+-++|+-++ +..+....+++..
T Consensus 134 ~deddEfec~aV-L~~-HtqDVK~V~WHPt~dlL~S~SYD---------------nTIk~~~~~~dddW~c~~tl~g~~~ 196 (312)
T KOG0645|consen 134 IDEDDEFECIAV-LQE-HTQDVKHVIWHPTEDLLFSCSYD---------------NTIKVYRDEDDDDWECVQTLDGHEN 196 (312)
T ss_pred ecCCCcEEEEee-ecc-ccccccEEEEcCCcceeEEeccC---------------CeEEEEeecCCCCeeEEEEecCccc
Confidence 334 444321 111 11234567788887888887651 2345666653 2223333333322
Q ss_pred CcceEEEccCCCEEEEE
Q 017317 219 FANGVALSKDEDYLVVC 235 (373)
Q Consensus 219 ~~~gi~~~~dg~~l~v~ 235 (373)
.-=.++|++.|..|.-+
T Consensus 197 TVW~~~F~~~G~rl~s~ 213 (312)
T KOG0645|consen 197 TVWSLAFDNIGSRLVSC 213 (312)
T ss_pred eEEEEEecCCCceEEEe
Confidence 22368889998754444
No 241
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=91.42 E-value=6.1 Score=35.73 Aligned_cols=149 Identities=11% Similarity=0.026 Sum_probs=80.7
Q ss_pred EEecCCCEEEEe-cCCeEEEEE-cCCceEEee------eecCccccCeEECCCCcEEEEECCCcEEEEe--cCC--cEEE
Q 017317 83 CVDRNGVLYTAT-RDGWIKRLH-KNGTWENWK------LIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVL 150 (373)
Q Consensus 83 a~d~~G~l~v~~-~~g~I~~~~-~~g~~~~~~------~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~--~~g--~~~l 150 (373)
..+|+-.+|..+ .+.-|..+| -+|+.+.-. +.....+ ++.|.+||.-.+|.....|..++ +.| ....
T Consensus 118 s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAh-sL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy 196 (406)
T KOG2919|consen 118 SDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAH-SLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVY 196 (406)
T ss_pred cCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhhe-eEEecCCCCeEeecccceEEEeeccCCCCCCcch
Confidence 345677788544 667788888 466543211 1122356 89999999755555456666677 445 3333
Q ss_pred eeccCCc--cccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEcc
Q 017317 151 ASHVNGS--RINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK 227 (373)
Q Consensus 151 ~~~~~~~--~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~ 227 (373)
.+...+. ...-+..+++.|-. ..+...+. + ..-+||+-+.. +-...+........-+.+.+
T Consensus 197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY---~------------q~~giy~~~~~-~pl~llggh~gGvThL~~~e 260 (406)
T KOG2919|consen 197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSY---G------------QRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCE 260 (406)
T ss_pred hhhhcccccccceeeeeeccCCCCcceeeecc---c------------ceeeeEecCCC-CceeeecccCCCeeeEEecc
Confidence 2222211 11234456777643 23322221 1 11234444421 11222222222334467899
Q ss_pred CCCEEEEEeCCCCeEEEEEec
Q 017317 228 DEDYLVVCETFKFRCLKYWLK 248 (373)
Q Consensus 228 dg~~l~v~~~~~~~i~~~~~~ 248 (373)
||+.||....-...|..+|+.
T Consensus 261 dGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 261 DGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred CcCeecccccCCCeEEEEeeh
Confidence 999999998888899999875
No 242
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=91.34 E-value=11 Score=34.14 Aligned_cols=61 Identities=16% Similarity=0.071 Sum_probs=37.9
Q ss_pred CCcceEEEccCCCEEEEEeCCCCeEEEEEec-CCCCcceeEEecCCCCCCCceeECCCCCEEEEEec
Q 017317 218 FFANGVALSKDEDYLVVCETFKFRCLKYWLK-GESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ 283 (373)
Q Consensus 218 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~ 283 (373)
..|--++++|.|+.|-++. ...+..|... |+.....+.. -.+-..+|..+++|++.+++..
T Consensus 332 ~~p~RL~lsP~g~~lA~s~--gs~l~~~~se~g~~~~~~e~~---h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 332 SEPVRLELSPSGDSLAVSF--GSDLKVFASEDGKDYPELEDI---HSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred CCceEEEeCCCCcEEEeec--CCceEEEEcccCccchhHHHh---hcCceeeEEecCCCcEEeeecc
Confidence 4566899999999655553 3457777643 2222222211 1235678999999988777643
No 243
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=91.25 E-value=16 Score=35.93 Aligned_cols=94 Identities=13% Similarity=0.103 Sum_probs=51.7
Q ss_pred CceEEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCC
Q 017317 197 HGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG 275 (373)
Q Consensus 197 ~g~l~~~d~~~~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG 275 (373)
+-+|+.+.....+.+..+ ..-..+..+.|.|..-+++|+.. +.|..|++..+.+.+ ... ......+.+++.+.|
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq--~~vRiYdL~kqelvK--kL~-tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ--RSVRIYDLSKQELVK--KLL-TGSKWISSMSIHPNG 619 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec--cceEEEehhHHHHHH--HHh-cCCeeeeeeeecCCC
Confidence 345665554422222111 11234567889999888999964 457778764321111 000 001124567787777
Q ss_pred -CEEEEEecCCCchhhhccCC
Q 017317 276 -SFWIAILQLSSPGLEFVHTS 295 (373)
Q Consensus 276 -~lwva~~~~~~~~~~~~~~~ 295 (373)
||.+++...+-.+.|....+
T Consensus 620 Dnli~gs~d~k~~WfDldlss 640 (733)
T KOG0650|consen 620 DNLILGSYDKKMCWFDLDLSS 640 (733)
T ss_pred CeEEEecCCCeeEEEEcccCc
Confidence 78888887766665554443
No 244
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.18 E-value=21 Score=37.12 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=37.5
Q ss_pred CCCEEEEecCCeEEEEE-cCCceEEeeeecCc---------cccCeEEC-----------------CCCcEEEEECCCcE
Q 017317 87 NGVLYTATRDGWIKRLH-KNGTWENWKLIGGD---------TLLGITTT-----------------QENEILVCDADKGL 139 (373)
Q Consensus 87 ~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~---------p~~gl~~d-----------------~~g~L~va~~~~gl 139 (373)
+|.||+++.++.|+.+| .+|+..-..+.... .. |+++. .++++|+++.+..|
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cR-Gvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCR-GVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccc-ceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 78999999999999999 56753211111000 11 22221 23478888777778
Q ss_pred EEEe-cCC
Q 017317 140 LKVT-EEG 146 (373)
Q Consensus 140 ~~~~-~~g 146 (373)
+.+| ++|
T Consensus 273 iALDA~TG 280 (764)
T TIGR03074 273 IALDADTG 280 (764)
T ss_pred EEEECCCC
Confidence 9999 777
No 245
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.03 E-value=1.5 Score=26.26 Aligned_cols=42 Identities=12% Similarity=0.010 Sum_probs=28.0
Q ss_pred cCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeEC
Q 017317 227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA 272 (373)
Q Consensus 227 ~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d 272 (373)
||++++|+++...+.|..++....+ .... . .....|.+++++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~--~~~~-i-~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK--VIAT-I-PVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe--EEEE-E-ECCCCCceEEeC
Confidence 5788999999999999999864321 1111 2 123468887764
No 246
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=91.02 E-value=12 Score=35.51 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=46.4
Q ss_pred ccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee--cCCCCcceEEEccCCCEEEEEeCC
Q 017317 161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVALSKDEDYLVVCETF 238 (373)
Q Consensus 161 ~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~~~~~~~gi~~~~dg~~l~v~~~~ 238 (373)
.+++|++-+.-.|..+.+. .+.-+||.+...-.+.+.+. .-..+.|.++|+.+|+++++.-..
T Consensus 382 Witsla~i~~sdL~asGS~---------------~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 382 WITSLAVIPGSDLLASGSW---------------SGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred ceeeeEecccCceEEecCC---------------CCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccc
Confidence 5666777666566665442 23346787765433333321 223456899999999988888777
Q ss_pred CCeEEEEEe
Q 017317 239 KFRCLKYWL 247 (373)
Q Consensus 239 ~~~i~~~~~ 247 (373)
.+++-|++.
T Consensus 447 EhRlGRW~~ 455 (479)
T KOG0299|consen 447 EHRLGRWWC 455 (479)
T ss_pred ccccceeeE
Confidence 788888774
No 247
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=90.75 E-value=12 Score=33.59 Aligned_cols=180 Identities=14% Similarity=0.127 Sum_probs=94.3
Q ss_pred ceEEEec-CCCEEEEecCCeEEEEEcCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeeccCC
Q 017317 80 EDVCVDR-NGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNG 156 (373)
Q Consensus 80 ~~ia~d~-~G~l~v~~~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~ 156 (373)
.+|-+++ .+.|.+++++|.+..++-...........+.|+..-+|..+-.+|+++..+-|.++| ..+ ...+.++..
T Consensus 17 S~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~- 95 (323)
T KOG1036|consen 17 SSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDE- 95 (323)
T ss_pred eeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCC-
Confidence 4455555 678889999999988883222111111234444366776666899998877788888 555 444433322
Q ss_pred ccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEEE
Q 017317 157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVC 235 (373)
Q Consensus 157 ~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~~dg~~l~v~ 235 (373)
.+..|...+.-...|+.+. ...|-.+|+.+.... ..+..+ .-.+.+-.|+.|+|.
T Consensus 96 ----~i~ci~~~~~~~~vIsgsW-----------------D~~ik~wD~R~~~~~---~~~d~~kkVy~~~v~g~~LvVg 151 (323)
T KOG1036|consen 96 ----GIRCIEYSYEVGCVISGSW-----------------DKTIKFWDPRNKVVV---GTFDQGKKVYCMDVSGNRLVVG 151 (323)
T ss_pred ----ceEEEEeeccCCeEEEccc-----------------CccEEEEeccccccc---cccccCceEEEEeccCCEEEEe
Confidence 2344544443344455432 356777787642211 111222 234556667766665
Q ss_pred eCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCC-CEEEEEecCCC
Q 017317 236 ETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG-SFWIAILQLSS 286 (373)
Q Consensus 236 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG-~lwva~~~~~~ 286 (373)
. .+..+..||+..-... ++.....+.-..+.++.-+++ .+.+++..||.
T Consensus 152 ~-~~r~v~iyDLRn~~~~-~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRV 201 (323)
T KOG1036|consen 152 T-SDRKVLIYDLRNLDEP-FQRRESSLKYQTRCVALVPNGEGYVVSSIEGRV 201 (323)
T ss_pred e-cCceEEEEEcccccch-hhhccccceeEEEEEEEecCCCceEEEeecceE
Confidence 4 4567888887532110 000000111123445555544 35566666653
No 248
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=90.67 E-value=14 Score=34.38 Aligned_cols=83 Identities=13% Similarity=0.204 Sum_probs=54.0
Q ss_pred CceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEEEeCC----CCeEEEEEec-CCCCcceeEEecCCCCCCC-ce
Q 017317 197 HGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVCETF----KFRCLKYWLK-GESKEQTEIFVENLPGGPD-NI 269 (373)
Q Consensus 197 ~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~----~~~i~~~~~~-~~~~~~~~~~~~~~~g~p~-~i 269 (373)
-..|+.++.+++..+.+-.+.... .-+.++++++.+|+..+. ...|++.+++ +. ..+.+... .... .+
T Consensus 259 ~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~---~~~~LT~~--~~~~~~~ 333 (353)
T PF00930_consen 259 YRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG---EPKCLTCE--DGDHYSA 333 (353)
T ss_dssp SEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT---EEEESSTT--SSTTEEE
T ss_pred CcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC---CeEeccCC--CCCceEE
Confidence 468999999988766654443333 457889999999988775 3478888766 32 22333211 1233 68
Q ss_pred eECCCCCEEEEEecC
Q 017317 270 KLAPDGSFWIAILQL 284 (373)
Q Consensus 270 ~~d~dG~lwva~~~~ 284 (373)
.++++|++++-+..+
T Consensus 334 ~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 334 SFSPDGKYYVDTYSG 348 (353)
T ss_dssp EE-TTSSEEEEEEES
T ss_pred EECCCCCEEEEEEcC
Confidence 899999998887654
No 249
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=90.66 E-value=14 Score=34.10 Aligned_cols=136 Identities=17% Similarity=0.156 Sum_probs=79.4
Q ss_pred ceEEEEeCCCCeEEE-eecCCCCcce-EEEccCCC--EEEEE-eCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeEC
Q 017317 198 GKLLKYDPSLNETSI-LLDSLFFANG-VALSKDED--YLVVC-ETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA 272 (373)
Q Consensus 198 g~l~~~d~~~~~~~~-~~~~~~~~~g-i~~~~dg~--~l~v~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d 272 (373)
+.||.||.++-+.-. +...-.+|.| .|+++... ++-+- .+..+.|+.|+... ........ .-.+-...++++
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--l~~v~~I~-aH~~~lAalafs 182 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--LQPVNTIN-AHKGPLAALAFS 182 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc--ceeeeEEE-ecCCceeEEEEC
Confidence 358888876543222 2222355665 35555443 34332 23456788888543 22221111 112334568899
Q ss_pred CCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEE-C-CCCcEEEEEeCCCCceecceeEEEE
Q 017317 273 PDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNV-A-ANGIVIRKFEDPNGKVMSFVTSALE 350 (373)
Q Consensus 273 ~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~-~-~~g~~~~~~~~~~g~~~~~~~~~~~ 350 (373)
++|++..+.... |.|+++ + ++|+.+..|.. |.....+.++.+
T Consensus 183 ~~G~llATASeK----------------------------------GTVIRVf~v~~G~kl~eFRR--G~~~~~IySL~F 226 (391)
T KOG2110|consen 183 PDGTLLATASEK----------------------------------GTVIRVFSVPEGQKLYEFRR--GTYPVSIYSLSF 226 (391)
T ss_pred CCCCEEEEeccC----------------------------------ceEEEEEEcCCccEeeeeeC--CceeeEEEEEEE
Confidence 999887765442 234443 3 78888887763 444556778888
Q ss_pred eC-CEEEEeeCCCCeEEEeeCCC
Q 017317 351 FD-DHLYLGSLNTNFIGKLPLKA 372 (373)
Q Consensus 351 ~~-g~L~vgs~~~~~i~~~~l~~ 372 (373)
+. ..+...+-+...|..++|+.
T Consensus 227 s~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 227 SPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CCCCCeEEEecCCCeEEEEEecc
Confidence 74 56666666788899999874
No 250
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=90.54 E-value=21 Score=36.11 Aligned_cols=66 Identities=14% Similarity=0.054 Sum_probs=39.0
Q ss_pred cceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEEEeCCCC
Q 017317 162 ADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVCETFKF 240 (373)
Q Consensus 162 ~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~~~ 240 (373)
+-++.+.|||++....-- ..+-.||.+|. -++..-+-+..-| -.+.+++|++ ++++.+-+.
T Consensus 511 vL~v~~Spdgk~LaVsLL---------------dnTVkVyflDt--lKFflsLYGHkLPV~smDIS~DSk-livTgSADK 572 (888)
T KOG0306|consen 511 VLCVSVSPDGKLLAVSLL---------------DNTVKVYFLDT--LKFFLSLYGHKLPVLSMDISPDSK-LIVTGSADK 572 (888)
T ss_pred EEEEEEcCCCcEEEEEec---------------cCeEEEEEecc--eeeeeeecccccceeEEeccCCcC-eEEeccCCC
Confidence 446778899987654211 12235666653 4444433333444 4688999998 888876655
Q ss_pred eEEEE
Q 017317 241 RCLKY 245 (373)
Q Consensus 241 ~i~~~ 245 (373)
.+..+
T Consensus 573 nVKiW 577 (888)
T KOG0306|consen 573 NVKIW 577 (888)
T ss_pred ceEEe
Confidence 45444
No 251
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=90.53 E-value=1.7 Score=39.52 Aligned_cols=90 Identities=12% Similarity=-0.002 Sum_probs=52.3
Q ss_pred ceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCE
Q 017317 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF 277 (373)
Q Consensus 198 g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l 277 (373)
..|-.++..+.++..... ..-.|||-..-...+.|+.+..+.|..+++.-...-. ..+.-..+...+.+|.+ +|
T Consensus 340 RTikvW~~st~efvRtl~--gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLR---vLeGHEeLvRciRFd~k-rI 413 (499)
T KOG0281|consen 340 RTIKVWSTSTCEFVRTLN--GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR---VLEGHEELVRCIRFDNK-RI 413 (499)
T ss_pred ceEEEEeccceeeehhhh--cccccceehhccCeEEEecCCCceEEEEeccccHHHH---HHhchHHhhhheeecCc-ee
Confidence 345566666666544332 2446787766556699999999999999875432111 11111234566777643 56
Q ss_pred EEEEecCCCchhhhcc
Q 017317 278 WIAILQLSSPGLEFVH 293 (373)
Q Consensus 278 wva~~~~~~~~~~~~~ 293 (373)
--+...|....+++.+
T Consensus 414 VSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 414 VSGAYDGKIKVWDLQA 429 (499)
T ss_pred eeccccceEEEEeccc
Confidence 6666666555555443
No 252
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=90.21 E-value=11 Score=32.29 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=15.3
Q ss_pred ccceeEEcCCCcEEEEeCC
Q 017317 161 LADDLIAATDGSIYFSVAS 179 (373)
Q Consensus 161 ~~~~l~~~~dG~l~v~~~~ 179 (373)
.+.++++.|.|.+|...+.
T Consensus 34 airav~fhp~g~lyavgsn 52 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSN 52 (350)
T ss_pred heeeEEecCCCceEEeccC
Confidence 4678899999999987654
No 253
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=90.11 E-value=24 Score=36.09 Aligned_cols=145 Identities=15% Similarity=0.156 Sum_probs=80.5
Q ss_pred ceEEEecCCCEE-EEecCCeEEEEEcCC------ceEEeeeecCccccCeEECCCCc-EEEEECCCcE-EEEe-cCC-cE
Q 017317 80 EDVCVDRNGVLY-TATRDGWIKRLHKNG------TWENWKLIGGDTLLGITTTQENE-ILVCDADKGL-LKVT-EEG-VT 148 (373)
Q Consensus 80 ~~ia~d~~G~l~-v~~~~g~I~~~~~~g------~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl-~~~~-~~g-~~ 148 (373)
.+.++.+.++.. ++..+|+|..+..-| ..+.+........ ++++..+|. ||-+.. .++ .++. .++ .+
T Consensus 209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~-~L~fS~~G~~LlSGG~-E~VLv~Wq~~T~~kq 286 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN-SLSFSSDGAYLLSGGR-EGVLVLWQLETGKKQ 286 (792)
T ss_pred eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc-eeEEecCCceEeeccc-ceEEEEEeecCCCcc
Confidence 456777777777 566889998886322 2233333345566 999999985 555543 344 4444 455 44
Q ss_pred EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee------------cC
Q 017317 149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL------------DS 216 (373)
Q Consensus 149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~------------~~ 216 (373)
.+. +..+ .+.++.+.+|+.+|..... ...|..+...+-...... ..
T Consensus 287 fLP-RLgs----~I~~i~vS~ds~~~sl~~~-----------------DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~ 344 (792)
T KOG1963|consen 287 FLP-RLGS----PILHIVVSPDSDLYSLVLE-----------------DNQIHLIKASDLEIKSTISGIKPPTPSTKTRP 344 (792)
T ss_pred ccc-ccCC----eeEEEEEcCCCCeEEEEec-----------------CceEEEEeccchhhhhhccCccCCCccccccc
Confidence 442 2221 3567889999988866432 123333322111111111 11
Q ss_pred CCCcceEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317 217 LFFANGVALSKDEDYLVVCETFKFRCLKYWLKG 249 (373)
Q Consensus 217 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~ 249 (373)
...+.+++++|--+ ..+-+...+.|..|++..
T Consensus 345 ~~l~t~~~idpr~~-~~vln~~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 345 QSLTTGVSIDPRTN-SLVLNGHPGHVQFYDLYT 376 (792)
T ss_pred cccceeEEEcCCCC-ceeecCCCceEEEEeccc
Confidence 23467888998444 333344556788888653
No 254
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.03 E-value=26 Score=36.34 Aligned_cols=148 Identities=12% Similarity=0.178 Sum_probs=83.3
Q ss_pred cceEEEecCCCEE--EEecCCeEEEEE-cCCc-eEEeeeecCccccCeEECCCCcEEEEECCC-cEEEEe-cCC--cEEE
Q 017317 79 PEDVCVDRNGVLY--TATRDGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQENEILVCDADK-GLLKVT-EEG--VTVL 150 (373)
Q Consensus 79 P~~ia~d~~G~l~--v~~~~g~I~~~~-~~g~-~~~~~~~~~~p~~gl~~d~~g~L~va~~~~-gl~~~~-~~g--~~~l 150 (373)
.-++++.|. +-| ++-.+|.|..+| .=|. ...|.+..|..- |++|++++-|||..... .|-.++ ++. .-.+
T Consensus 12 vKglsFHP~-rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVR-gv~FH~~qplFVSGGDDykIkVWnYk~rrclftL 89 (1202)
T KOG0292|consen 12 VKGLSFHPK-RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVR-GVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL 89 (1202)
T ss_pred ccceecCCC-CCEEEEeecCceeeeehhhhhhHHhhhhccCCccc-eeeecCCCCeEEecCCccEEEEEecccceehhhh
Confidence 445667663 334 455788888887 3222 333444445556 99999999999974433 233333 322 1111
Q ss_pred eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-CCcceEEEccCC
Q 017317 151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVALSKDE 229 (373)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~~~gi~~~~dg 229 (373)
.. ...++..+.|.+. .=|+-..+ ..-.|..++-.+.+..-++++. .....-.|.|..
T Consensus 90 ~G-----HlDYVRt~~FHhe-yPWIlSAS----------------DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE 147 (1202)
T KOG0292|consen 90 LG-----HLDYVRTVFFHHE-YPWILSAS----------------DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE 147 (1202)
T ss_pred cc-----ccceeEEeeccCC-CceEEEcc----------------CCCeEEEEeccCCceEEEEecCceEEEeeccCCcc
Confidence 11 1234555566544 23443222 1234444454444444444442 233456688877
Q ss_pred CEEEEEeCCCCeEEEEEecCCC
Q 017317 230 DYLVVCETFKFRCLKYWLKGES 251 (373)
Q Consensus 230 ~~l~v~~~~~~~i~~~~~~~~~ 251 (373)
+ ++|+.+.+..|.++|+.|-+
T Consensus 148 D-lIVSaSLDQTVRVWDisGLR 168 (1202)
T KOG0292|consen 148 D-LIVSASLDQTVRVWDISGLR 168 (1202)
T ss_pred c-eEEEecccceEEEEeecchh
Confidence 7 89998889999999988653
No 255
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=90.02 E-value=3.8 Score=37.57 Aligned_cols=143 Identities=15% Similarity=0.153 Sum_probs=74.7
Q ss_pred ceEEEecCCCEEEEecCCeEEEEEcCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEec--CC-cEEEeeccCC
Q 017317 80 EDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTE--EG-VTVLASHVNG 156 (373)
Q Consensus 80 ~~ia~d~~G~l~v~~~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~--~g-~~~l~~~~~~ 156 (373)
.+|.++....+++|+ +..|-++..+|.........+... ||.-...+.+++.-. .-+-.+|. +- ++.+.-..
T Consensus 113 ~Gi~v~~~~~~tvgd-DKtvK~wk~~~~p~~tilg~s~~~-gIdh~~~~~~FaTcG-e~i~IWD~~R~~Pv~smswG~-- 187 (433)
T KOG0268|consen 113 RGICVTQTSFFTVGD-DKTVKQWKIDGPPLHTILGKSVYL-GIDHHRKNSVFATCG-EQIDIWDEQRDNPVSSMSWGA-- 187 (433)
T ss_pred eeEEecccceEEecC-CcceeeeeccCCcceeeecccccc-ccccccccccccccC-ceeeecccccCCccceeecCC--
Confidence 456776533333444 344544444443221112122334 555555556665432 23555552 22 33322111
Q ss_pred ccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEE
Q 017317 157 SRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC 235 (373)
Q Consensus 157 ~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~ 235 (373)
..+..+.+.|-- .|..+.. ..+.|+.||..+++...-..---.+|+|+|.| ..+.+++
T Consensus 188 ---Dti~svkfNpvETsILas~~-----------------sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~ 246 (433)
T KOG0268|consen 188 ---DSISSVKFNPVETSILASCA-----------------SDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVA 246 (433)
T ss_pred ---CceeEEecCCCcchheeeec-----------------cCCceEEEecccCCccceeeeeccccceecCc-cccceee
Confidence 123345555544 3444332 24678899977655322111123589999999 5578888
Q ss_pred eCCCCeEEEEEec
Q 017317 236 ETFKFRCLKYWLK 248 (373)
Q Consensus 236 ~~~~~~i~~~~~~ 248 (373)
...++.+|-||+.
T Consensus 247 a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 247 ANEDHNLYTYDMR 259 (433)
T ss_pred ccccccceehhhh
Confidence 8888999999864
No 256
>PHA03098 kelch-like protein; Provisional
Probab=90.01 E-value=21 Score=35.33 Aligned_cols=145 Identities=15% Similarity=0.053 Sum_probs=69.7
Q ss_pred CCCEEE-EecC------CeEEEEE-cCCceEEeeeec-CccccCeEECCCCcEEEEECC------CcEEEEe-cCC-cEE
Q 017317 87 NGVLYT-ATRD------GWIKRLH-KNGTWENWKLIG-GDTLLGITTTQENEILVCDAD------KGLLKVT-EEG-VTV 149 (373)
Q Consensus 87 ~G~l~v-~~~~------g~I~~~~-~~g~~~~~~~~~-~~p~~gl~~d~~g~L~va~~~------~gl~~~~-~~g-~~~ 149 (373)
++.||+ |..+ ..+++++ .++++....... .+...+++. -+|+||+.... ..+.+++ .++ .+.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV-FNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE-ECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 678884 4321 2567787 344555443221 111113333 36789986432 1255666 444 443
Q ss_pred EeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ce-EEEcc
Q 017317 150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NG-VALSK 227 (373)
Q Consensus 150 l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~g-i~~~~ 227 (373)
.... +. + .-..-+..-+|.||+..+.... ......+++||+.+++++.+.. ...+ .+ -+..-
T Consensus 373 ~~~l-p~-~--r~~~~~~~~~~~iYv~GG~~~~-----------~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~ 436 (534)
T PHA03098 373 EPPL-IF-P--RYNPCVVNVNNLIYVIGGISKN-----------DELLKTVECFSLNTNKWSKGSP-LPISHYGGCAIYH 436 (534)
T ss_pred CCCc-Cc-C--CccceEEEECCEEEEECCcCCC-----------CcccceEEEEeCCCCeeeecCC-CCccccCceEEEE
Confidence 3221 11 1 1111122347899997542100 0113568999999888776532 1111 11 12222
Q ss_pred CCCEEEEEeCCC--------CeEEEEEecC
Q 017317 228 DEDYLVVCETFK--------FRCLKYWLKG 249 (373)
Q Consensus 228 dg~~l~v~~~~~--------~~i~~~~~~~ 249 (373)
++ .+|+..... ..+++||...
T Consensus 437 ~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 437 DG-KIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred CC-EEEEECCccCCCCCcccceEEEecCCC
Confidence 33 588875321 2377887543
No 257
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=89.94 E-value=16 Score=33.70 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=51.6
Q ss_pred CCceEEEEeCCCCeEEEeecCCCC-cceEEEccCCCEEEEEeCCCCeEEEE-Eec-CCCCcceeEEecCCCCCCCceeEC
Q 017317 196 PHGKLLKYDPSLNETSILLDSLFF-ANGVALSKDEDYLVVCETFKFRCLKY-WLK-GESKEQTEIFVENLPGGPDNIKLA 272 (373)
Q Consensus 196 ~~g~l~~~d~~~~~~~~~~~~~~~-~~gi~~~~dg~~l~v~~~~~~~i~~~-~~~-~~~~~~~~~~~~~~~g~p~~i~~d 272 (373)
..|.|+.||..+-+.......... -..++|+++|. ++.+-+..+.|.|. .+. |++..+++. ...+.....++++
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~eFRR--G~~~~~IySL~Fs 227 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRR--GTYPVSIYSLSFS 227 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeeeeeC--CceeeEEEEEEEC
Confidence 368899999876554443332222 35699999998 66666677777664 443 333222221 1112234447889
Q ss_pred CCCCEEEEEecC
Q 017317 273 PDGSFWIAILQL 284 (373)
Q Consensus 273 ~dG~lwva~~~~ 284 (373)
+|+.+..++...
T Consensus 228 ~ds~~L~~sS~T 239 (391)
T KOG2110|consen 228 PDSQFLAASSNT 239 (391)
T ss_pred CCCCeEEEecCC
Confidence 999887776554
No 258
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.61 E-value=23 Score=35.17 Aligned_cols=165 Identities=15% Similarity=0.180 Sum_probs=80.1
Q ss_pred CCC-EEEEecCCeEEEEEcCC---ceE-Ee----eeecCccccCeEECCCC-cEEEEECCCcEEEEe-c-CC---cEEEe
Q 017317 87 NGV-LYTATRDGWIKRLHKNG---TWE-NW----KLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-E-EG---VTVLA 151 (373)
Q Consensus 87 ~G~-l~v~~~~g~I~~~~~~g---~~~-~~----~~~~~~p~~gl~~d~~g-~L~va~~~~gl~~~~-~-~g---~~~l~ 151 (373)
+++ ||.|..+|.|..++-+. .+. .+ .......+ .|+.-.+| .|.-|.....+-.++ . ++ ...+.
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVN-DiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVN-DIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHh-hHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 666 88899999888887221 111 10 01112234 45554556 455455555565565 2 21 22222
Q ss_pred eccCCccccccceeEE-cCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-------CCC-C---
Q 017317 152 SHVNGSRINLADDLIA-ATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-------SLF-F--- 219 (373)
Q Consensus 152 ~~~~~~~~~~~~~l~~-~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-------~~~-~--- 219 (373)
+ ...++..|+. .++..+.++.+ -.+.|+.+|-.++.-+.+.. .+. .
T Consensus 115 ~-----H~DYVkcla~~ak~~~lvaSgG-----------------LD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 115 T-----HKDYVKCLAYIAKNNELVASGG-----------------LDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred c-----ccchheeeeecccCceeEEecC-----------------CCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 2 1235667777 55555655532 23567777766552211111 011 1
Q ss_pred -cceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCc---eeECCCCCEEEEE
Q 017317 220 -ANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDN---IKLAPDGSFWIAI 281 (373)
Q Consensus 220 -~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~---i~~d~dG~lwva~ 281 (373)
...++..+.| +++|+...+.-|..|+... ... .. .+.|+-+| +.++.||+-.+++
T Consensus 173 siYSLA~N~t~-t~ivsGgtek~lr~wDprt---~~k--im-kLrGHTdNVr~ll~~dDGt~~ls~ 231 (735)
T KOG0308|consen 173 SIYSLAMNQTG-TIIVSGGTEKDLRLWDPRT---CKK--IM-KLRGHTDNVRVLLVNDDGTRLLSA 231 (735)
T ss_pred ceeeeecCCcc-eEEEecCcccceEEecccc---ccc--ee-eeeccccceEEEEEcCCCCeEeec
Confidence 1235555555 4777765555555555322 111 11 22345555 4578899644443
No 259
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=89.43 E-value=27 Score=35.72 Aligned_cols=144 Identities=16% Similarity=0.100 Sum_probs=78.8
Q ss_pred cceEEEecCCCEEEEecCCeEEEEE-cCCceEEeeee-----cCccccCeEECCCCcEEEE-ECCCcEEEEe--c-CC--
Q 017317 79 PEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLI-----GGDTLLGITTTQENEILVC-DADKGLLKVT--E-EG-- 146 (373)
Q Consensus 79 P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~-----~~~p~~gl~~d~~g~L~va-~~~~gl~~~~--~-~g-- 146 (373)
|..|+....|....-..+-.++.+. +.+........ .-... ..++.+.++..++ +..+.|+.+. . ++
T Consensus 163 ~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t-~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNIT-CVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred CccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccce-eEEeccccceEEEeccCCcEEEEecccccccc
Confidence 7777777777766444444565555 32221110000 00012 4566677765544 3334454443 2 12
Q ss_pred --cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceE
Q 017317 147 --VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGV 223 (373)
Q Consensus 147 --~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi 223 (373)
.+.+.-+ ...++++++..||....+.+. .+-+.++..++++ +.++..+..| .++
T Consensus 242 ~t~t~lHWH-----~~~V~~L~fS~~G~~LlSGG~-----------------E~VLv~Wq~~T~~-kqfLPRLgs~I~~i 298 (792)
T KOG1963|consen 242 ETCTLLHWH-----HDEVNSLSFSSDGAYLLSGGR-----------------EGVLVLWQLETGK-KQFLPRLGSPILHI 298 (792)
T ss_pred ccceEEEec-----ccccceeEEecCCceEeeccc-----------------ceEEEEEeecCCC-cccccccCCeeEEE
Confidence 1222111 125788999999954444322 2455555555666 4556666555 689
Q ss_pred EEccCCCEEEEEeCCCCeEEEEEe
Q 017317 224 ALSKDEDYLVVCETFKFRCLKYWL 247 (373)
Q Consensus 224 ~~~~dg~~l~v~~~~~~~i~~~~~ 247 (373)
.+++|++ +|-.-..++.|..+..
T Consensus 299 ~vS~ds~-~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 299 VVSPDSD-LYSLVLEDNQIHLIKA 321 (792)
T ss_pred EEcCCCC-eEEEEecCceEEEEec
Confidence 9999998 6666667888888765
No 260
>PHA02790 Kelch-like protein; Provisional
Probab=89.37 E-value=23 Score=34.72 Aligned_cols=166 Identities=9% Similarity=0.049 Sum_probs=79.4
Q ss_pred CCCEEE-EecC-----CeEEEEEc-CCceEEeeeec-CccccCeEECCCCcEEEEECC---CcEEEEe-cCC-cEEEeec
Q 017317 87 NGVLYT-ATRD-----GWIKRLHK-NGTWENWKLIG-GDTLLGITTTQENEILVCDAD---KGLLKVT-EEG-VTVLASH 153 (373)
Q Consensus 87 ~G~l~v-~~~~-----g~I~~~~~-~g~~~~~~~~~-~~p~~gl~~d~~g~L~va~~~---~gl~~~~-~~g-~~~l~~~ 153 (373)
++.||+ |..+ ..+.++++ .+++....... .+...+.+. -+|.||+.... ..+.+++ .++ .+.+..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~- 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS- 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-ECCEEEEECCcCCCCceEEEECCCCeEEECCC-
Confidence 578884 4322 24677874 44454443221 111113333 46899986432 2366677 344 443322
Q ss_pred cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc--ceEEEccCCCE
Q 017317 154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA--NGVALSKDEDY 231 (373)
Q Consensus 154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~--~gi~~~~dg~~ 231 (373)
.+......-+..-+|.||+..+.. .....+.+|||.+++++.... ...| ..-+..-++ .
T Consensus 349 ---l~~~r~~~~~~~~~g~IYviGG~~--------------~~~~~ve~ydp~~~~W~~~~~-m~~~r~~~~~~~~~~-~ 409 (480)
T PHA02790 349 ---LLKPRCNPAVASINNVIYVIGGHS--------------ETDTTTEYLLPNHDQWQFGPS-TYYPHYKSCALVFGR-R 409 (480)
T ss_pred ---CCCCCcccEEEEECCEEEEecCcC--------------CCCccEEEEeCCCCEEEeCCC-CCCccccceEEEECC-E
Confidence 111111122333479999975421 011357789999888776432 2222 111222344 4
Q ss_pred EEEEeCCCCeEEEEEecCCCCcceeEEecCCCC--CCCceeECCCCCEEEEE
Q 017317 232 LVVCETFKFRCLKYWLKGESKEQTEIFVENLPG--GPDNIKLAPDGSFWIAI 281 (373)
Q Consensus 232 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g--~p~~i~~d~dG~lwva~ 281 (373)
+|+... ...+|+... .+..... ..+. .-.+++. -+|.||+..
T Consensus 410 IYv~GG---~~e~ydp~~---~~W~~~~-~m~~~r~~~~~~v-~~~~IYviG 453 (480)
T PHA02790 410 LFLVGR---NAEFYCESS---NTWTLID-DPIYPRDNPELII-VDNKLLLIG 453 (480)
T ss_pred EEEECC---ceEEecCCC---CcEeEcC-CCCCCccccEEEE-ECCEEEEEC
Confidence 998852 366777432 2222222 2221 1112332 467888874
No 261
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=89.31 E-value=23 Score=34.68 Aligned_cols=147 Identities=13% Similarity=0.182 Sum_probs=70.5
Q ss_pred CCeEEEEEcCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEecCC-cEEEeeccCCccccccceeEEcCCCcEE
Q 017317 96 DGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIY 174 (373)
Q Consensus 96 ~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~ 174 (373)
....+.+|.+|.++.+..........+...++|.|++... ..+..+|-.| ...... .++.....=.++...++|++.
T Consensus 127 ~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~-l~~~~~~~HHD~~~l~nGn~L 204 (477)
T PF05935_consen 127 SSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYD-LPGGYYDFHHDIDELPNGNLL 204 (477)
T ss_dssp EEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE---TTEE-B-S-EEE-TTS-EE
T ss_pred CceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCCCCEEEeee-cCCcccccccccEECCCCCEE
Confidence 4667888888887654332222220256678999998875 6788888666 322222 222111123578899999876
Q ss_pred EEeCCccccccccccccccccCCceEEEEeCCCCeEEEee---cCC-------------------------CCcceEEEc
Q 017317 175 FSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL---DSL-------------------------FFANGVALS 226 (373)
Q Consensus 175 v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~---~~~-------------------------~~~~gi~~~ 226 (373)
+........... .....-.-.|+.+| .+|++.... +-+ .+.|++.++
T Consensus 205 ~l~~~~~~~~~~----~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 205 ILASETKYVDED----KDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp EEEEETTEE-TS-----EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred EEEeecccccCC----CCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 654311110000 00011123577777 445543321 000 124678888
Q ss_pred cCCCEEEEEeCCCCeEEEEEecC
Q 017317 227 KDEDYLVVCETFKFRCLKYWLKG 249 (373)
Q Consensus 227 ~dg~~l~v~~~~~~~i~~~~~~~ 249 (373)
+..+.++++.+..+.|++++...
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t 302 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRT 302 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TT
T ss_pred CCCCeEEEEcCcceEEEEEECCC
Confidence 86667999998888999998443
No 262
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=89.15 E-value=15 Score=32.45 Aligned_cols=152 Identities=16% Similarity=0.110 Sum_probs=78.4
Q ss_pred CcceEEEecCCCEEEE-e---cCCeEEEEEcCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe---cCC-cEE
Q 017317 78 GPEDVCVDRNGVLYTA-T---RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT---EEG-VTV 149 (373)
Q Consensus 78 ~P~~ia~d~~G~l~v~-~---~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~---~~g-~~~ 149 (373)
.+.+.++.++|..+.. . ....++....++...... ...... ...++++|.+|+++......++. .++ ...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~-~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLT-RPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccc-cccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 5677788888876532 2 234455555555444432 223444 67789999999986654433322 344 322
Q ss_pred EeeccCCccccccceeEEcCCC-cE-EEEeCCccccccccccccccccCCceEEEE----eCCCCeEEE------ee-cC
Q 017317 150 LASHVNGSRINLADDLIAATDG-SI-YFSVASTKFGLHNWGLDLLEAKPHGKLLKY----DPSLNETSI------LL-DS 216 (373)
Q Consensus 150 l~~~~~~~~~~~~~~l~~~~dG-~l-~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~----d~~~~~~~~------~~-~~ 216 (373)
..-....... .+..|.+++|| ++ ++.... ..++|+.- +.+ +.... +. ..
T Consensus 103 ~~v~~~~~~~-~I~~l~vSpDG~RvA~v~~~~----------------~~~~v~va~V~r~~~-g~~~~l~~~~~~~~~~ 164 (253)
T PF10647_consen 103 VEVDWPGLRG-RITALRVSPDGTRVAVVVEDG----------------GGGRVYVAGVVRDGD-GVPRRLTGPRRVAPPL 164 (253)
T ss_pred EEecccccCC-ceEEEEECCCCcEEEEEEecC----------------CCCeEEEEEEEeCCC-CCcceeccceEecccc
Confidence 2111111111 57789999999 44 333211 12444432 222 21111 11 22
Q ss_pred CCCcceEEEccCCCEEEEEeCCCCeEEE-EEecC
Q 017317 217 LFFANGVALSKDEDYLVVCETFKFRCLK-YWLKG 249 (373)
Q Consensus 217 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~-~~~~~ 249 (373)
......++|..++..++++......+.. +..+|
T Consensus 165 ~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG 198 (253)
T PF10647_consen 165 LSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDG 198 (253)
T ss_pred cCcceeeeecCCCEEEEEeCCCCCceeEEEEccC
Confidence 3445689999998844445444444555 44444
No 263
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=89.02 E-value=27 Score=35.02 Aligned_cols=140 Identities=19% Similarity=0.278 Sum_probs=64.2
Q ss_pred eEEEecCCCEEEEecCCeEEEEEcCCceE-EeeeecCccccCeEECCCCcEEEE-ECCCcEEEEecCC--cEEEeeccCC
Q 017317 81 DVCVDRNGVLYTATRDGWIKRLHKNGTWE-NWKLIGGDTLLGITTTQENEILVC-DADKGLLKVTEEG--VTVLASHVNG 156 (373)
Q Consensus 81 ~ia~d~~G~l~v~~~~g~I~~~~~~g~~~-~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~~~g--~~~l~~~~~~ 156 (373)
++..+.++.+..|+++-.+.++. .|+.. .......... .++.-+++ .|+. .+++ .+++-..| .+.+..+
T Consensus 106 ~ls~~~~~~~iSgSWD~TakvW~-~~~l~~~l~gH~asVW-Av~~l~e~-~~vTgsaDK-tIklWk~~~~l~tf~gH--- 178 (745)
T KOG0301|consen 106 SLSIGEDGTLISGSWDSTAKVWR-IGELVYSLQGHTASVW-AVASLPEN-TYVTGSADK-TIKLWKGGTLLKTFSGH--- 178 (745)
T ss_pred eeecCCcCceEecccccceEEec-chhhhcccCCcchhee-eeeecCCC-cEEeccCcc-eeeeccCCchhhhhccc---
Confidence 34445566666666655544443 12111 1111112233 44555666 4554 4444 44443223 3433221
Q ss_pred ccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEe
Q 017317 157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE 236 (373)
Q Consensus 157 ~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~ 236 (373)
...+.++++-+++.+. +.+. .|.|.+++.++.........-.+-..+....+++ ++++.
T Consensus 179 --tD~VRgL~vl~~~~fl-ScsN-----------------Dg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~-~Ivs~ 237 (745)
T KOG0301|consen 179 --TDCVRGLAVLDDSHFL-SCSN-----------------DGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDG-LIVST 237 (745)
T ss_pred --hhheeeeEEecCCCeE-eecC-----------------CceEEEEeccCceeeeeeccceEEEEEEecCCCC-eEEEe
Confidence 1246677877665543 2221 3566666664433333333223334455444444 66665
Q ss_pred CCCCeEEEEEecC
Q 017317 237 TFKFRCLKYWLKG 249 (373)
Q Consensus 237 ~~~~~i~~~~~~~ 249 (373)
+.+|-.|+|-.+
T Consensus 238 -gEDrtlriW~~~ 249 (745)
T KOG0301|consen 238 -GEDRTLRIWKKD 249 (745)
T ss_pred -cCCceEEEeecC
Confidence 445666666433
No 264
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.57 E-value=37 Score=36.08 Aligned_cols=228 Identities=14% Similarity=0.072 Sum_probs=111.7
Q ss_pred EEEEecCCeEEEEE--cC--CceEEeee--------ecCccccCeEEC---CCCcEEEEECCCcEEE-EecCCcEEEeec
Q 017317 90 LYTATRDGWIKRLH--KN--GTWENWKL--------IGGDTLLGITTT---QENEILVCDADKGLLK-VTEEGVTVLASH 153 (373)
Q Consensus 90 l~v~~~~g~I~~~~--~~--g~~~~~~~--------~~~~p~~gl~~d---~~g~L~va~~~~gl~~-~~~~g~~~l~~~ 153 (373)
+.+++.+|-|..+. .+ ++.+.+.. ...+-. |+.+| ..|.|+++.. -.+++ +|......+.+
T Consensus 1126 lLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~-~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~d- 1202 (1387)
T KOG1517|consen 1126 LLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGT-GLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVAD- 1202 (1387)
T ss_pred eeeeccCceEEEecccccccCCceeEEeeccccccCccCCCC-CeeeehhhhCCeEEecCC-eeEEEEEecccceeEee-
Confidence 44677777665555 33 33332211 112334 66665 5677877642 33444 44222222222
Q ss_pred cCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE----EEeecCCCC--cceEEEc
Q 017317 154 VNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET----SILLDSLFF--ANGVALS 226 (373)
Q Consensus 154 ~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~----~~~~~~~~~--~~gi~~~ 226 (373)
.+-.....+..+.-+. .|++.++.- ..|.|-.||...... ......... ..++.+-
T Consensus 1203 iP~~s~t~vTaLS~~~~~gn~i~AGf-----------------aDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq 1265 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLVHGNIIAAGF-----------------ADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQ 1265 (1387)
T ss_pred cccCCCccceeecccccCCceEEEee-----------------cCCceEEeecccCCccccceeecccCCcccceeEEee
Confidence 2222223455665553 368777643 246777777432211 111111111 3456666
Q ss_pred cCCCEEEEEeCCCCeEEEEEecCC-CCcceeEEecCCCCC-CCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHh
Q 017317 227 KDEDYLVVCETFKFRCLKYWLKGE-SKEQTEIFVENLPGG-PDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAA 304 (373)
Q Consensus 227 ~dg~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~g~-p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~ 304 (373)
+.|-.-+|+.+.++.|..+|+... +............|. -..+.+-++-.+..+...
T Consensus 1266 ~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~--------------------- 1324 (1387)
T KOG1517|consen 1266 RQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA--------------------- 1324 (1387)
T ss_pred cCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc---------------------
Confidence 666555777777888999998763 211111111111121 223344333334433222
Q ss_pred cchhhhhccCCCccEEEEEECCCCcEEEEEeC---CCCceecceeEEEEeCCE-EEEeeCCCCeEEEeeCCC
Q 017317 305 FPKLIKLVAPLHKKAAVVNVAANGIVIRKFED---PNGKVMSFVTSALEFDDH-LYLGSLNTNFIGKLPLKA 372 (373)
Q Consensus 305 ~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~---~~g~~~~~~~~~~~~~g~-L~vgs~~~~~i~~~~l~~ 372 (373)
..+-.|+.+|+.+..+.- .-|.....++.+.++.-+ +...+...++|..|.-++
T Consensus 1325 --------------q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1325 --------------QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred --------------ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 235667777877655432 223334556788887643 344447788888887553
No 265
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=88.55 E-value=22 Score=33.50 Aligned_cols=39 Identities=28% Similarity=0.300 Sum_probs=22.4
Q ss_pred ceEEEEeCCCCeEEEeecCCC-CcceEEEccCCCEEEEEe
Q 017317 198 GKLLKYDPSLNETSILLDSLF-FANGVALSKDEDYLVVCE 236 (373)
Q Consensus 198 g~l~~~d~~~~~~~~~~~~~~-~~~gi~~~~dg~~l~v~~ 236 (373)
..+++||+.+++...+..... .-.+.++..-++.||+..
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~G 228 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLIN 228 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEe
Confidence 579999999888876542211 112333333234588765
No 266
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=88.34 E-value=27 Score=34.22 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=56.4
Q ss_pred EEEecCCCEEEEecCCeEEEEEcCCceEEeeeecCc----cccCeEECCCCcEEEEEC--------------CCcEEEEe
Q 017317 82 VCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGD----TLLGITTTQENEILVCDA--------------DKGLLKVT 143 (373)
Q Consensus 82 ia~d~~G~l~v~~~~g~I~~~~~~g~~~~~~~~~~~----p~~gl~~d~~g~L~va~~--------------~~gl~~~~ 143 (373)
+...++|.++++.. ..+..+|..|+........+. -+ .+...++|++++... ...|+.++
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HH-D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHH-DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S--EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCccccccc-ccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 44455777776555 677888877775433332332 35 888889998665322 23577787
Q ss_pred cCC-c-EEEe--eccC--------------------CccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCc
Q 017317 144 EEG-V-TVLA--SHVN--------------------GSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHG 198 (373)
Q Consensus 144 ~~g-~-~~l~--~~~~--------------------~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g 198 (373)
++| + ..+. ...+ +......|++..++ ++.|.++.- ...
T Consensus 231 ~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR-----------------~~s 293 (477)
T PF05935_consen 231 PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSR-----------------HQS 293 (477)
T ss_dssp TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEET-----------------TT-
T ss_pred CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcC-----------------cce
Confidence 667 3 2221 1110 01112567888887 678888742 345
Q ss_pred eEEEEeCCCCeEEEee
Q 017317 199 KLLKYDPSLNETSILL 214 (373)
Q Consensus 199 ~l~~~d~~~~~~~~~~ 214 (373)
.|+++|..++++..++
T Consensus 294 ~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 294 AVIKIDYRTGKIKWIL 309 (477)
T ss_dssp EEEEEE-TTS-EEEEE
T ss_pred EEEEEECCCCcEEEEe
Confidence 7888887777776543
No 267
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=87.88 E-value=21 Score=36.16 Aligned_cols=146 Identities=15% Similarity=0.106 Sum_probs=81.1
Q ss_pred cceEEEecCCCEE-EEecCCeEEEEEcCC-ceEEeeeecCccccCeEECCCCcEEEEEC-CCcEEEEe-cCC--cEEEee
Q 017317 79 PEDVCVDRNGVLY-TATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENEILVCDA-DKGLLKVT-EEG--VTVLAS 152 (373)
Q Consensus 79 P~~ia~d~~G~l~-v~~~~g~I~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~L~va~~-~~gl~~~~-~~g--~~~l~~ 152 (373)
--++.+.|||.+. ++--++.+..+-.|. ++..-.-...-|+..|-+.+|.++.|... .+.+-.+- .=| .+-+..
T Consensus 511 vL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA 590 (888)
T KOG0306|consen 511 VLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA 590 (888)
T ss_pred EEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc
Confidence 3456778888888 555677766555332 22211111223443677778898887633 33333332 223 222221
Q ss_pred ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCe-EEEeecCCCCcceEEEccCCCE
Q 017317 153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-TSILLDSLFFANGVALSKDEDY 231 (373)
Q Consensus 153 ~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~-~~~~~~~~~~~~gi~~~~dg~~ 231 (373)
+. ..+..+.+-|+-.++|+.+. .+.+-++|.+.-+ ++.+.......-.++.+|+|+
T Consensus 591 Hd-----DSvm~V~F~P~~~~FFt~gK-----------------D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~- 647 (888)
T KOG0306|consen 591 HD-----DSVMSVQFLPKTHLFFTCGK-----------------DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGS- 647 (888)
T ss_pred cc-----CceeEEEEcccceeEEEecC-----------------cceEEeechhhhhhheeeccchheeeeeEEcCCCC-
Confidence 11 23567788888888888764 4677788764221 222222233445688899998
Q ss_pred EEEEeCCCCeEEEEEe
Q 017317 232 LVVCETFKFRCLKYWL 247 (373)
Q Consensus 232 l~v~~~~~~~i~~~~~ 247 (373)
..|+.+-+..|..|..
T Consensus 648 ~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 648 FVVSSSHDKSIRLWER 663 (888)
T ss_pred eEEeccCCceeEeeec
Confidence 5556555566666653
No 268
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=87.72 E-value=5.2 Score=38.95 Aligned_cols=146 Identities=11% Similarity=0.112 Sum_probs=75.3
Q ss_pred EEEec-CCCEEEEecCCeEEEEEc-CCc-eEEe---ee---ecC-----ccccCeEECCCC-cEEEEECCCcEEEEe-cC
Q 017317 82 VCVDR-NGVLYTATRDGWIKRLHK-NGT-WENW---KL---IGG-----DTLLGITTTQEN-EILVCDADKGLLKVT-EE 145 (373)
Q Consensus 82 ia~d~-~G~l~v~~~~g~I~~~~~-~g~-~~~~---~~---~~~-----~p~~gl~~d~~g-~L~va~~~~gl~~~~-~~ 145 (373)
+-+.+ .|.|-+|+.+|.|-.||+ +.. ...+ .. .++ .+. ++.|+.+| .+=|++..+.++.+| ..
T Consensus 181 v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svT-al~F~d~gL~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 181 VSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVT-ALKFRDDGLHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred eeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcce-EEEecCCceeEEeeccCCcEEEEEccc
Confidence 34444 455557778888887873 211 1111 11 111 245 78887666 455667666688888 54
Q ss_pred C-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEE
Q 017317 146 G-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA 224 (373)
Q Consensus 146 g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~ 224 (373)
. ...+.++....+......+..+.+..++-.|.. .+-.+|..+|+.-........-|-++
T Consensus 260 ~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~-------------------~~kiWd~~~Gk~~asiEpt~~lND~C 320 (703)
T KOG2321|consen 260 SKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKR-------------------ILKIWDECTGKPMASIEPTSDLNDFC 320 (703)
T ss_pred CCceeecccCCccceeeecccccCCCceEEecchH-------------------HhhhcccccCCceeeccccCCcCcee
Confidence 4 333333322222221111111212234433321 23335666676655555556678899
Q ss_pred EccCCCEEEEEeCCCCeEEEEEec
Q 017317 225 LSKDEDYLVVCETFKFRCLKYWLK 248 (373)
Q Consensus 225 ~~~dg~~l~v~~~~~~~i~~~~~~ 248 (373)
+-|++..++++. ....+..|.+.
T Consensus 321 ~~p~sGm~f~An-e~~~m~~yyiP 343 (703)
T KOG2321|consen 321 FVPGSGMFFTAN-ESSKMHTYYIP 343 (703)
T ss_pred eecCCceEEEec-CCCcceeEEcc
Confidence 999987555554 45566666653
No 269
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=87.50 E-value=27 Score=33.27 Aligned_cols=85 Identities=15% Similarity=0.052 Sum_probs=45.7
Q ss_pred ceEEEEeCCCCeEEEeecCCCCc--ceEEEccCCCEEEEEeCCC----------CeEEEEEecCCCCcceeEEecCCCCC
Q 017317 198 GKLLKYDPSLNETSILLDSLFFA--NGVALSKDEDYLVVCETFK----------FRCLKYWLKGESKEQTEIFVENLPGG 265 (373)
Q Consensus 198 g~l~~~d~~~~~~~~~~~~~~~~--~gi~~~~dg~~l~v~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~g~ 265 (373)
-.|+.+|.++++... +.+..+ .+++|.+|++.+|.+.... ..|+++.+..+......+|......+
T Consensus 150 ~~l~v~Dl~tg~~l~--d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~ 227 (414)
T PF02897_consen 150 YTLRVFDLETGKFLP--DGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPF 227 (414)
T ss_dssp EEEEEEETTTTEEEE--EEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTT
T ss_pred EEEEEEECCCCcCcC--CcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCc
Confidence 458889998885432 222222 2399999999888876433 34666665443222233443222222
Q ss_pred -CCceeECCCCCE-EEEEecC
Q 017317 266 -PDNIKLAPDGSF-WIAILQL 284 (373)
Q Consensus 266 -p~~i~~d~dG~l-wva~~~~ 284 (373)
--++..+.||++ .+....+
T Consensus 228 ~~~~~~~s~d~~~l~i~~~~~ 248 (414)
T PF02897_consen 228 WFVSVSRSKDGRYLFISSSSG 248 (414)
T ss_dssp SEEEEEE-TTSSEEEEEEESS
T ss_pred EEEEEEecCcccEEEEEEEcc
Confidence 235667888875 4444443
No 270
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=86.61 E-value=21 Score=33.67 Aligned_cols=141 Identities=9% Similarity=-0.015 Sum_probs=79.3
Q ss_pred CCCEEEEecCCeEEEEEcCC--c------eEE-eeeecCccccCeEECC-CCcEEEEECC-CcEEEEe-cCC---cEEEe
Q 017317 87 NGVLYTATRDGWIKRLHKNG--T------WEN-WKLIGGDTLLGITTTQ-ENEILVCDAD-KGLLKVT-EEG---VTVLA 151 (373)
Q Consensus 87 ~G~l~v~~~~g~I~~~~~~g--~------~~~-~~~~~~~p~~gl~~d~-~g~L~va~~~-~gl~~~~-~~g---~~~l~ 151 (373)
.|.|..+..++.|..++.+. . .+. +........ ..++.+ +..||.+... ..+..+| +++ .+...
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~Ve-DV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~ 268 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVE-DVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV 268 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCccee-hhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc
Confidence 57777778888898888322 1 111 111112223 444443 2346644332 3455566 432 11111
Q ss_pred eccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE--EEeecCCCCcceEEEccCC
Q 017317 152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET--SILLDSLFFANGVALSKDE 229 (373)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~--~~~~~~~~~~~gi~~~~dg 229 (373)
. ..-..++.+++.|-+...+++.+ ..++|..+|..+-.. ..+...-..-..+.|+|..
T Consensus 269 ~----ah~~~vn~~~fnp~~~~ilAT~S----------------~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~ 328 (422)
T KOG0264|consen 269 K----AHSAEVNCVAFNPFNEFILATGS----------------ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN 328 (422)
T ss_pred c----ccCCceeEEEeCCCCCceEEecc----------------CCCcEEEeechhcccCceeccCCCcceEEEEeCCCC
Confidence 1 11134678899987655555443 357888888763221 1111112233568999999
Q ss_pred CEEEEEeCCCCeEEEEEec
Q 017317 230 DYLVVCETFKFRCLKYWLK 248 (373)
Q Consensus 230 ~~l~v~~~~~~~i~~~~~~ 248 (373)
+.++.+....+++..+|+.
T Consensus 329 etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 329 ETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred CceeEecccCCcEEEEecc
Confidence 9899998888999999975
No 271
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=86.60 E-value=22 Score=31.43 Aligned_cols=179 Identities=11% Similarity=0.075 Sum_probs=94.5
Q ss_pred EEEecCCCEEEEe-cCCeEEEEE-cCCc-eEEeeeecCccccCeEECCCCcEE-EEECCCcEEEEe-cCC--cEEEeecc
Q 017317 82 VCVDRNGVLYTAT-RDGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQENEIL-VCDADKGLLKVT-EEG--VTVLASHV 154 (373)
Q Consensus 82 ia~d~~G~l~v~~-~~g~I~~~~-~~g~-~~~~~~~~~~p~~gl~~d~~g~L~-va~~~~gl~~~~-~~g--~~~l~~~~ 154 (373)
|-+..+|.|.+.. .+....++- .+|+ .-++....+... .+.+|.+-+.. -+.+.+.+..+| ++| +..+..
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW-~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-- 92 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVW-CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-- 92 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEE-EEEecCCcceeeeccccceeEEEEcCCCcEEEEeec--
Confidence 4555678877655 333333332 3554 233333344455 55666544433 344445566777 777 222211
Q ss_pred CCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCC-------CCe-EEEeecCCCCcceEEEc
Q 017317 155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-------LNE-TSILLDSLFFANGVALS 226 (373)
Q Consensus 155 ~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-------~~~-~~~~~~~~~~~~gi~~~ 226 (373)
+ ..+..+.++.+|++.+.......|. .+.|..+|.. ..+ +..+...-..++...|+
T Consensus 93 -~---~~Vk~~~F~~~gn~~l~~tD~~mg~------------~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 93 -N---SPVKRVDFSFGGNLILASTDKQMGY------------TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred -C---CeeEEEeeccCCcEEEEEehhhcCc------------ceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 1 1345678888897655443321221 2334444432 112 22333333556778899
Q ss_pred cCCCEEEEEeCCCCeEEEEEecCC-CCcceeEEecCCCCCCCceeECCCCCEEEEEec
Q 017317 227 KDEDYLVVCETFKFRCLKYWLKGE-SKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ 283 (373)
Q Consensus 227 ~dg~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~ 283 (373)
+-+++++.. -.++.|.+|++... ..-+... .-..-.+++.+.+|..++++...
T Consensus 157 ~l~~~ii~G-he~G~is~~da~~g~~~v~s~~---~h~~~Ind~q~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 157 PLGETIIAG-HEDGSISIYDARTGKELVDSDE---EHSSKINDLQFSRDRTYFITGSK 210 (327)
T ss_pred ccCCEEEEe-cCCCcEEEEEcccCceeeechh---hhccccccccccCCcceEEeccc
Confidence 999855544 45678999997542 1111100 11124678999999999988653
No 272
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=85.98 E-value=40 Score=33.83 Aligned_cols=134 Identities=14% Similarity=0.116 Sum_probs=66.9
Q ss_pred eEEEEE-cCCceEEeeeec-CccccCeEECCCCcEEEEECCC-------cEEEEe-cCC-cEEEeeccCCccccccceeE
Q 017317 98 WIKRLH-KNGTWENWKLIG-GDTLLGITTTQENEILVCDADK-------GLLKVT-EEG-VTVLASHVNGSRINLADDLI 166 (373)
Q Consensus 98 ~I~~~~-~~g~~~~~~~~~-~~p~~gl~~d~~g~L~va~~~~-------gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~ 166 (373)
.+-.+| ..+++...+..+ .+...++++- +|.|||+.... .+.+|| ... ...++.-.. .+.-.+++
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~---~R~~~~v~ 377 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT---KRSDFGVA 377 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccC---ccccceeE
Confidence 445566 334454443322 2222266664 57899874333 255666 333 333322110 01111222
Q ss_pred EcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCC------C
Q 017317 167 AATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK------F 240 (373)
Q Consensus 167 ~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~------~ 240 (373)
. -+|.||+..+.. | ...-..+-+|||.+.+++.+..-...-.+.+...-+..+|++.... .
T Consensus 378 ~-l~g~iYavGG~d--g----------~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~ 444 (571)
T KOG4441|consen 378 V-LDGKLYAVGGFD--G----------EKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLN 444 (571)
T ss_pred E-ECCEEEEEeccc--c----------ccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccc
Confidence 2 378999876541 1 1122468999999988887653322222333333334588876522 4
Q ss_pred eEEEEEec
Q 017317 241 RCLKYWLK 248 (373)
Q Consensus 241 ~i~~~~~~ 248 (373)
.+.+||..
T Consensus 445 sve~YDP~ 452 (571)
T KOG4441|consen 445 SVECYDPE 452 (571)
T ss_pred eEEEEcCC
Confidence 56778744
No 273
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=85.90 E-value=6.8 Score=35.78 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=84.8
Q ss_pred CCcceEEEecCCCEEEEecCCeEEEEEcCCce--EEeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe-cCC--cEEE
Q 017317 77 NGPEDVCVDRNGVLYTATRDGWIKRLHKNGTW--ENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG--VTVL 150 (373)
Q Consensus 77 ~~P~~ia~d~~G~l~v~~~~g~I~~~~~~g~~--~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~g--~~~l 150 (373)
.+-.++.+| |+.+..|..++.|..+|.+... .......|... .+-+ +.++.|. .....+..+| ++| +..+
T Consensus 198 kgVYClQYD-D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVL-CLqy--d~rviisGSSDsTvrvWDv~tge~l~tl 273 (499)
T KOG0281|consen 198 KGVYCLQYD-DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVL-CLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTL 273 (499)
T ss_pred CceEEEEec-chhhhcccccCceEEeccccHHHHHhhhcCCCcEE-eeec--cceEEEecCCCceEEEEeccCCchhhHH
Confidence 344556666 6677777788888888754321 11112223333 3444 4567765 3345677777 677 4443
Q ss_pred eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCe-EE-EeecCCCCcceEEEccC
Q 017317 151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-TS-ILLDSLFFANGVALSKD 228 (373)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~-~~-~~~~~~~~~~gi~~~~d 228 (373)
...-+ .+-.+.+. +| +.|+.+. ..+.+||..+..+.. .. ++.......|.+.|+.
T Consensus 274 ihHce-----aVLhlrf~-ng-~mvtcSk---------------DrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~- 330 (499)
T KOG0281|consen 274 IHHCE-----AVLHLRFS-NG-YMVTCSK---------------DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD- 330 (499)
T ss_pred hhhcc-----eeEEEEEe-CC-EEEEecC---------------CceeEEEeccCchHHHHHHHHhhhhhheeeecccc-
Confidence 32211 12234443 23 4445443 123456666533211 00 1122233446666653
Q ss_pred CCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeEC-CCCCEEEEEe
Q 017317 229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA-PDGSFWIAIL 282 (373)
Q Consensus 229 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d-~dG~lwva~~ 282 (373)
+ ++|+.++...|..++.+.. .+...+.|.-.||+-- -.|++-|+..
T Consensus 331 -k-yIVsASgDRTikvW~~st~------efvRtl~gHkRGIAClQYr~rlvVSGS 377 (499)
T KOG0281|consen 331 -K-YIVSASGDRTIKVWSTSTC------EFVRTLNGHKRGIACLQYRDRLVVSGS 377 (499)
T ss_pred -c-eEEEecCCceEEEEeccce------eeehhhhcccccceehhccCeEEEecC
Confidence 3 6677666666666664322 2333455667777643 3556666543
No 274
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=85.15 E-value=3.1 Score=30.04 Aligned_cols=48 Identities=8% Similarity=-0.108 Sum_probs=31.9
Q ss_pred EecCCeEEEEEcCCceEEeeeecCccccCeEECCCC-cEEEEECCC-cEEEE
Q 017317 93 ATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-EILVCDADK-GLLKV 142 (373)
Q Consensus 93 ~~~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g-~L~va~~~~-gl~~~ 142 (373)
+..-+.|+.+++ ++.+..+.....|+ ||.+++++ .|||++... .|..+
T Consensus 32 ~~~~~~Vvyyd~-~~~~~va~g~~~aN-GI~~s~~~k~lyVa~~~~~~I~vy 81 (86)
T PF01731_consen 32 GLPWGNVVYYDG-KEVKVVASGFSFAN-GIAISPDKKYLYVASSLAHSIHVY 81 (86)
T ss_pred cCCCceEEEEeC-CEeEEeeccCCCCc-eEEEcCCCCEEEEEeccCCeEEEE
Confidence 334567777764 34555555567889 99999877 589997653 34444
No 275
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=85.12 E-value=32 Score=34.84 Aligned_cols=102 Identities=10% Similarity=0.000 Sum_probs=55.5
Q ss_pred ccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc----ceEEEccCCCEEEE
Q 017317 159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA----NGVALSKDEDYLVV 234 (373)
Q Consensus 159 ~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~----~gi~~~~dg~~l~v 234 (373)
.....+|++||.-.+.++... ...|-.||.+.++......+-..- --+.++|.|. |+
T Consensus 596 ktTlYDm~Vdp~~k~v~t~cQ-----------------Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi--Y~ 656 (1080)
T KOG1408|consen 596 KTTLYDMAVDPTSKLVVTVCQ-----------------DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI--YL 656 (1080)
T ss_pred cceEEEeeeCCCcceEEEEec-----------------ccceEEEeccccceeeeecccccCCCceEEEEECCCcc--EE
Confidence 345789999998655554322 134666777766655555443333 3366788874 54
Q ss_pred Ee-CCCCeEEEEEecCC-----CCcceeEEecCCCCCCCc---eeECCCCCEEEE
Q 017317 235 CE-TFKFRCLKYWLKGE-----SKEQTEIFVENLPGGPDN---IKLAPDGSFWIA 280 (373)
Q Consensus 235 ~~-~~~~~i~~~~~~~~-----~~~~~~~~~~~~~g~p~~---i~~d~dG~lwva 280 (373)
+. ..+..+..||.... ..+..+.+. ..--.+|. |.+..||.|+|=
T Consensus 657 atScsdktl~~~Df~sgEcvA~m~GHsE~VT-G~kF~nDCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 657 ATSCSDKTLCFVDFVSGECVAQMTGHSEAVT-GVKFLNDCKHLISVSGDGCIFVW 710 (1080)
T ss_pred EEeecCCceEEEEeccchhhhhhcCcchhee-eeeecccchhheeecCCceEEEE
Confidence 43 34556888886432 122222222 11112333 556778877663
No 276
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=84.89 E-value=2.9 Score=24.96 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=24.1
Q ss_pred CcCCcceEEEec-CCCEEE-EecCCeEEEEEcCC
Q 017317 75 ILNGPEDVCVDR-NGVLYT-ATRDGWIKRLHKNG 106 (373)
Q Consensus 75 ~~~~P~~ia~d~-~G~l~v-~~~~g~I~~~~~~g 106 (373)
.+..|.++++|+ +++||. ....+.|.+.+-+|
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 478899999998 667884 44667788777555
No 277
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=84.70 E-value=11 Score=34.89 Aligned_cols=104 Identities=13% Similarity=0.194 Sum_probs=56.1
Q ss_pred CeEECCCCcE-EEEECCCcE--EEEec-C-CcEEEeeccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccc
Q 017317 121 GITTTQENEI-LVCDADKGL--LKVTE-E-GVTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEA 194 (373)
Q Consensus 121 gl~~d~~g~L-~va~~~~gl--~~~~~-~-g~~~l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~ 194 (373)
.....++++| ++++..+.. +.++. . +.+.+..... -..++++.+..+. .+-+++..
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v---~~~~~ai~~~~~~~sv~v~dka--------------- 128 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV---PKRPTAISFIREDTSVLVADKA--------------- 128 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec---ccCcceeeeeeccceEEEEeec---------------
Confidence 4445566664 456665654 33432 2 2222211110 1245566665544 56666643
Q ss_pred cCCceEEEEeCCC---CeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 017317 195 KPHGKLLKYDPSL---NETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYW 246 (373)
Q Consensus 195 ~~~g~l~~~d~~~---~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~ 246 (373)
|.++.+|.-. +..+.....+..-..+++++|+++++.++... .|..-+
T Consensus 129 ---gD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDE-kIRvs~ 179 (390)
T KOG3914|consen 129 ---GDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDE-KIRVSR 179 (390)
T ss_pred ---CCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCc-eEEEEe
Confidence 5566665322 44444455556667899999999888888644 444433
No 278
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=84.62 E-value=33 Score=31.66 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=36.1
Q ss_pred CCceEEEEeCCCCeEEE-eecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC
Q 017317 196 PHGKLLKYDPSLNETSI-LLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE 250 (373)
Q Consensus 196 ~~g~l~~~d~~~~~~~~-~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~ 250 (373)
..+.|-.+|..++..-. +........+++|+|.|++|+-+ ..+..+..|+++..
T Consensus 312 rDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sc-aDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 312 RDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSC-ADDKTLRVWDLKNL 366 (406)
T ss_pred ccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEE-ecCCcEEEEEeccc
Confidence 34556666777776543 33445667899999999955543 45667888887653
No 279
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=84.28 E-value=33 Score=31.29 Aligned_cols=133 Identities=12% Similarity=0.065 Sum_probs=75.7
Q ss_pred eEEEEeCCCCeEEEee------cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC--CCcceeEEecCC---CCCCC
Q 017317 199 KLLKYDPSLNETSILL------DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE--SKEQTEIFVENL---PGGPD 267 (373)
Q Consensus 199 ~l~~~d~~~~~~~~~~------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~---~g~p~ 267 (373)
-|..+|.-+|+.+--. +.+.....++|++||..||.. .++.|..|+...+ ......++..+. .|...
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG--ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG--YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec--ccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 3555565555544221 223446789999999977766 4567888987422 211111111111 23344
Q ss_pred ceeECCCC--CEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecce
Q 017317 268 NIKLAPDG--SFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFV 345 (373)
Q Consensus 268 ~i~~d~dG--~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~ 345 (373)
.+++.+-. .+-+++.+.+ -.|+. +-++.++..+....| .+
T Consensus 212 c~a~sP~~~~~~a~gsY~q~---------------------------------~giy~-~~~~~pl~llggh~g----Gv 253 (406)
T KOG2919|consen 212 CFAFSPMDSKTLAVGSYGQR---------------------------------VGIYN-DDGRRPLQLLGGHGG----GV 253 (406)
T ss_pred eeeccCCCCcceeeecccce---------------------------------eeeEe-cCCCCceeeecccCC----Ce
Confidence 45555422 3444444432 11222 345667777765544 47
Q ss_pred eEEEE--eCCEEEEeeCCCCeEEEeeCC
Q 017317 346 TSALE--FDDHLYLGSLNTNFIGKLPLK 371 (373)
Q Consensus 346 ~~~~~--~~g~L~vgs~~~~~i~~~~l~ 371 (373)
|.+.. ++++||.|....+.|..-+|.
T Consensus 254 ThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 254 THLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred eeEEeccCcCeecccccCCCeEEEEeeh
Confidence 77765 457999999999999887765
No 280
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=84.25 E-value=32 Score=31.24 Aligned_cols=144 Identities=14% Similarity=0.098 Sum_probs=71.9
Q ss_pred cceEEEecCCCEEEEe-cCCeEEEEE-cCC--ceE---EeeeecCccccCeEECCCCcEE-EEE-CCCcE--EEEe--cC
Q 017317 79 PEDVCVDRNGVLYTAT-RDGWIKRLH-KNG--TWE---NWKLIGGDTLLGITTTQENEIL-VCD-ADKGL--LKVT--EE 145 (373)
Q Consensus 79 P~~ia~d~~G~l~v~~-~~g~I~~~~-~~g--~~~---~~~~~~~~p~~gl~~d~~g~L~-va~-~~~gl--~~~~--~~ 145 (373)
-.++++..||.-++.. .++.|..++ .|- +.. ...-..+.|. -++|.+|-+-+ |+- .+..| |..+ .+
T Consensus 89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT-~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d 167 (420)
T KOG2096|consen 89 VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPT-RVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD 167 (420)
T ss_pred eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCce-EEEECCCcceEEEEEccCCEEEEEEeeeccc
Confidence 4668888888877544 666666666 221 100 0111234677 78888777532 322 22334 3344 24
Q ss_pred C-cEEEeeccCCccc---cccceeEEc-CCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc
Q 017317 146 G-VTVLASHVNGSRI---NLADDLIAA-TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA 220 (373)
Q Consensus 146 g-~~~l~~~~~~~~~---~~~~~l~~~-~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ 220 (373)
| ........+...+ +.+.-+.+. .++..|+...+ ..-.|..++.++.....+.......
T Consensus 168 G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas----------------~dt~i~lw~lkGq~L~~idtnq~~n 231 (420)
T KOG2096|consen 168 GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSAS----------------LDTKICLWDLKGQLLQSIDTNQSSN 231 (420)
T ss_pred CCCCcccccccccccchhcccceEEEeecCCceEEEEec----------------CCCcEEEEecCCceeeeeccccccc
Confidence 5 3322222221111 112122222 24455555433 2246777887733333344444444
Q ss_pred ceEEEccCCCEEEEEeCCC
Q 017317 221 NGVALSKDEDYLVVCETFK 239 (373)
Q Consensus 221 ~gi~~~~dg~~l~v~~~~~ 239 (373)
.--+++|+|+++.++...-
T Consensus 232 ~~aavSP~GRFia~~gFTp 250 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTP 250 (420)
T ss_pred cceeeCCCCcEEEEecCCC
Confidence 5678999999877776543
No 281
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.21 E-value=37 Score=31.82 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=29.6
Q ss_pred CeEECCCCcEEEEECCCcEEEEe--cCCcEEEeeccCCccccccceeEEcCCCcEEEEeCC
Q 017317 121 GITTTQENEILVCDADKGLLKVT--EEGVTVLASHVNGSRINLADDLIAATDGSIYFSVAS 179 (373)
Q Consensus 121 gl~~d~~g~L~va~~~~gl~~~~--~~g~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~ 179 (373)
-+++..+|.+..+-...|.+|+- ++-...+.. ......+.+|.+.+||.+.++.+.
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e---~~~~~eV~DL~FS~dgk~lasig~ 206 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE---IAHHAEVKDLDFSPDGKFLASIGA 206 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhhhhh---HhhcCccccceeCCCCcEEEEecC
Confidence 45566666555443334444443 322111100 112246889999999988777543
No 282
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=83.50 E-value=47 Score=32.48 Aligned_cols=82 Identities=17% Similarity=0.160 Sum_probs=52.1
Q ss_pred EEEEecCCeEEEEEcCCceEEeee-ecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cE-EEeeccCCcccccccee
Q 017317 90 LYTATRDGWIKRLHKNGTWENWKL-IGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VT-VLASHVNGSRINLADDL 165 (373)
Q Consensus 90 l~v~~~~g~I~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~-~l~~~~~~~~~~~~~~l 165 (373)
+.+.+.+|+++.+++.|+++.... .++... .-.+.+||.-.+.....|++++- ++| .+ .++.. ...+..+
T Consensus 78 ~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~-~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~-----~~~v~c~ 151 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKSARVERSISAHAAAIS-SGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQN-----EESIRCA 151 (737)
T ss_pred EEEEcCCceEEEecccchhhhhhhhhhhhhh-hcccCCCCceeeeecCCceEEEEeccchHHHHHhhc-----CceeEEE
Confidence 447778999999988888765432 233444 45677888755555557888776 778 43 23211 1346678
Q ss_pred EEcCCC-cEEEEe
Q 017317 166 IAATDG-SIYFSV 177 (373)
Q Consensus 166 ~~~~dG-~l~v~~ 177 (373)
+.+|+. ++.++.
T Consensus 152 ~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQ 164 (737)
T ss_pred EECCCCCceEEec
Confidence 888875 555554
No 283
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=83.47 E-value=27 Score=31.40 Aligned_cols=109 Identities=14% Similarity=0.124 Sum_probs=67.2
Q ss_pred CeEECCCCcEEEEEC-CCcEEEEecCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCc
Q 017317 121 GITTTQENEILVCDA-DKGLLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHG 198 (373)
Q Consensus 121 gl~~d~~g~L~va~~-~~gl~~~~~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g 198 (373)
-+.|+|+|..++... .+.|+.++..| .+.... ..+ ....+.++...+|++..++.+. .-
T Consensus 52 ~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~-lkg-HsgAVM~l~~~~d~s~i~S~gt-----------------Dk 112 (338)
T KOG0265|consen 52 TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWV-LKG-HSGAVMELHGMRDGSHILSCGT-----------------DK 112 (338)
T ss_pred EEEECCCCCeEeecCCcceEEEEeccccccceee-ecc-ccceeEeeeeccCCCEEEEecC-----------------Cc
Confidence 667889998887633 34577776334 332211 112 1235678888999988887654 35
Q ss_pred eEEEEeCCCCeEEEe-ecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 017317 199 KLLKYDPSLNETSIL-LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK 248 (373)
Q Consensus 199 ~l~~~d~~~~~~~~~-~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 248 (373)
+|+.+|.++|+...- .....+.|.+.-..-|-.|+.+.+.+..+..||+.
T Consensus 113 ~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R 163 (338)
T KOG0265|consen 113 TVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR 163 (338)
T ss_pred eEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence 789999988875542 23334455555455555555555666677777765
No 284
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=83.02 E-value=40 Score=31.41 Aligned_cols=147 Identities=14% Similarity=0.186 Sum_probs=78.6
Q ss_pred cceEEEecCCCEE-EEecCCeEEEEE--cCCc---eEEeeeecCccccCeEECCCC-cEEEEECCCcEEEEe-c---CC-
Q 017317 79 PEDVCVDRNGVLY-TATRDGWIKRLH--KNGT---WENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-E---EG- 146 (373)
Q Consensus 79 P~~ia~d~~G~l~-v~~~~g~I~~~~--~~g~---~~~~~~~~~~p~~gl~~d~~g-~L~va~~~~gl~~~~-~---~g- 146 (373)
+..+...++|++. +++..-+.+.++ .+-+ .........++. .+.+..+. ...|++..+-.+.++ - .+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~-ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPT-AISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcc-eeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 4455555677766 666655554444 2211 111122345666 77766444 566777655566665 1 14
Q ss_pred cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-ecCCCCcceEEE
Q 017317 147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVAL 225 (373)
Q Consensus 147 ~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~~gi~~ 225 (373)
.+.+.. ......++++.+|+.+.++... ...-+|.+|.. +...+.+ .+.-.+...+++
T Consensus 144 ~~~~lG-----hvSml~dVavS~D~~~IitaDR---------------DEkIRvs~ypa-~f~IesfclGH~eFVS~isl 202 (390)
T KOG3914|consen 144 CEPILG-----HVSMLLDVAVSPDDQFIITADR---------------DEKIRVSRYPA-TFVIESFCLGHKEFVSTISL 202 (390)
T ss_pred cchhhh-----hhhhhheeeecCCCCEEEEecC---------------CceEEEEecCc-ccchhhhccccHhheeeeee
Confidence 222211 1235678999999977666322 11224444532 2222221 122234566777
Q ss_pred ccCCCEEEEEeCCCCeEEEEEecC
Q 017317 226 SKDEDYLVVCETFKFRCLKYWLKG 249 (373)
Q Consensus 226 ~~dg~~l~v~~~~~~~i~~~~~~~ 249 (373)
.++ +++++..+++.++.+++..
T Consensus 203 ~~~--~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 203 TDN--YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred ccC--ceeeecCCCCcEEEEeccc
Confidence 654 3678888888899888753
No 285
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=82.98 E-value=1.1 Score=26.67 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=15.8
Q ss_pred ccceeEEcCCCcEEEEeC
Q 017317 161 LADDLIAATDGSIYFSVA 178 (373)
Q Consensus 161 ~~~~l~~~~dG~l~v~~~ 178 (373)
.+++|++|++|++|++..
T Consensus 14 ~~~~IavD~~GNiYv~G~ 31 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGY 31 (38)
T ss_pred eEEEEEECCCCCEEEEEe
Confidence 578999999999999854
No 286
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=82.97 E-value=45 Score=31.92 Aligned_cols=138 Identities=12% Similarity=0.159 Sum_probs=81.8
Q ss_pred cccCeEECCCCcEEEEECCCcEEEEe-cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccc
Q 017317 118 TLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEA 194 (373)
Q Consensus 118 p~~gl~~d~~g~L~va~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~ 194 (373)
.. +|++..+|.+.+.....|..++- .+| +..+..+ . ..+..|....+|+..++.+
T Consensus 238 VT-~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~H-k----gPI~slKWnk~G~yilS~~---------------- 295 (524)
T KOG0273|consen 238 VT-SLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQH-K----GPIFSLKWNKKGTYILSGG---------------- 295 (524)
T ss_pred cc-eEEecCCCCeEEEeecCcEEEEEecCchhhhhhhcc-C----CceEEEEEcCCCCEEEecc----------------
Confidence 45 89999999988876667776665 566 4443221 1 1355778888887666643
Q ss_pred cCCceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECC
Q 017317 195 KPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP 273 (373)
Q Consensus 195 ~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~ 273 (373)
-.+.+..+|..++.+.+...-...| -.+.|-.+ .-+++......|++|.+.+.. ....+.. -.+-.+.+..++
T Consensus 296 -vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~--P~~t~~G-H~g~V~alk~n~ 369 (524)
T KOG0273|consen 296 -VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDR--PVKTFIG-HHGEVNALKWNP 369 (524)
T ss_pred -CCccEEEEeccCceEEEeeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCC--cceeeec-ccCceEEEEECC
Confidence 2467888888777766543322223 22333322 246666667778887775432 1222332 234456677777
Q ss_pred CCCEEEEEec
Q 017317 274 DGSFWIAILQ 283 (373)
Q Consensus 274 dG~lwva~~~ 283 (373)
.|.|..++..
T Consensus 370 tg~LLaS~Sd 379 (524)
T KOG0273|consen 370 TGSLLASCSD 379 (524)
T ss_pred CCceEEEecC
Confidence 7777766554
No 287
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.91 E-value=65 Score=33.68 Aligned_cols=68 Identities=12% Similarity=0.132 Sum_probs=47.6
Q ss_pred CcCCcceEEEecCCCEEE-EecCCeEEEEEcCC--ceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe
Q 017317 75 ILNGPEDVCVDRNGVLYT-ATRDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT 143 (373)
Q Consensus 75 ~~~~P~~ia~d~~G~l~v-~~~~g~I~~~~~~g--~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~ 143 (373)
-...-.++.++|..++.+ .++++.|.++|.+. .+.++.....+-. -++.+|..+||.|....|+..+-
T Consensus 249 H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW-~laahP~lNLfAAgHDsGm~VFk 319 (1202)
T KOG0292|consen 249 HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW-ILAAHPELNLFAAGHDSGMIVFK 319 (1202)
T ss_pred ccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE-EEEecCCcceeeeecCCceEEEE
Confidence 345567788998666664 45788888888433 3556655566777 78888999999987767755443
No 288
>PHA02790 Kelch-like protein; Provisional
Probab=82.74 E-value=50 Score=32.32 Aligned_cols=64 Identities=8% Similarity=-0.035 Sum_probs=35.3
Q ss_pred cCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcc-eEE-EccCCCEEEEEeCCC---CeE
Q 017317 168 ATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN-GVA-LSKDEDYLVVCETFK---FRC 242 (373)
Q Consensus 168 ~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~-gi~-~~~dg~~l~v~~~~~---~~i 242 (373)
.-+|.||+..+.. ....+.+||+.++++..+.. +..+. +.+ ..-+| .+|+..... ..+
T Consensus 316 ~~~~~iYviGG~~---------------~~~sve~ydp~~n~W~~~~~-l~~~r~~~~~~~~~g-~IYviGG~~~~~~~v 378 (480)
T PHA02790 316 PANNKLYVVGGLP---------------NPTSVERWFHGDAAWVNMPS-LLKPRCNPAVASINN-VIYVIGGHSETDTTT 378 (480)
T ss_pred EECCEEEEECCcC---------------CCCceEEEECCCCeEEECCC-CCCCCcccEEEEECC-EEEEecCcCCCCccE
Confidence 3478999985420 11358899998777765432 22221 211 22244 489875422 346
Q ss_pred EEEEec
Q 017317 243 LKYWLK 248 (373)
Q Consensus 243 ~~~~~~ 248 (373)
.+|+..
T Consensus 379 e~ydp~ 384 (480)
T PHA02790 379 EYLLPN 384 (480)
T ss_pred EEEeCC
Confidence 677743
No 289
>KOG4328 consensus WD40 protein [Function unknown]
Probab=82.27 E-value=24 Score=33.56 Aligned_cols=148 Identities=13% Similarity=0.048 Sum_probs=76.6
Q ss_pred ceEEEec--CCCEE-EEecCCeEEEEEcCCc------eEEeeeecCccccCeEECCCC--cEEEEECCCcEEEEe-cCC-
Q 017317 80 EDVCVDR--NGVLY-TATRDGWIKRLHKNGT------WENWKLIGGDTLLGITTTQEN--EILVCDADKGLLKVT-EEG- 146 (373)
Q Consensus 80 ~~ia~d~--~G~l~-v~~~~g~I~~~~~~g~------~~~~~~~~~~p~~gl~~d~~g--~L~va~~~~gl~~~~-~~g- 146 (373)
.++++.| +-.+. +|+..|.|-.++-+++ +..+. ..+.|+.+|.+.+.+ .+|.+.+.+.|...| +.+
T Consensus 190 t~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i 268 (498)
T KOG4328|consen 190 TSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNI 268 (498)
T ss_pred EEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeeccCceeeeeeecchh
Confidence 4466666 22344 6777788877773221 12221 223444488888655 577776544344444 444
Q ss_pred cEEEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCe--EEEeecCCCCcceE
Q 017317 147 VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--TSILLDSLFFANGV 223 (373)
Q Consensus 147 ~~~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~--~~~~~~~~~~~~gi 223 (373)
.+.+...... .....++.+.. ++.+++++.. |.+-.+|..++. .+.+.-.-...+++
T Consensus 269 ~e~v~s~~~d--~~~fs~~d~~~e~~~vl~~~~~------------------G~f~~iD~R~~~s~~~~~~lh~kKI~sv 328 (498)
T KOG4328|consen 269 SEEVLSLDTD--NIWFSSLDFSAESRSVLFGDNV------------------GNFNVIDLRTDGSEYENLRLHKKKITSV 328 (498)
T ss_pred hHHHhhcCcc--ceeeeeccccCCCccEEEeecc------------------cceEEEEeecCCccchhhhhhhccccee
Confidence 4433322111 01122334433 4567776543 323334433332 22221111256789
Q ss_pred EEccCCCEEEEEeCCCCeEEEEEec
Q 017317 224 ALSKDEDYLVVCETFKFRCLKYWLK 248 (373)
Q Consensus 224 ~~~~dg~~l~v~~~~~~~i~~~~~~ 248 (373)
++.|...+++.+...++....||+.
T Consensus 329 ~~NP~~p~~laT~s~D~T~kIWD~R 353 (498)
T KOG4328|consen 329 ALNPVCPWFLATASLDQTAKIWDLR 353 (498)
T ss_pred ecCCCCchheeecccCcceeeeehh
Confidence 9999988788877777777677754
No 290
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=81.99 E-value=66 Score=34.27 Aligned_cols=172 Identities=16% Similarity=0.212 Sum_probs=97.8
Q ss_pred CCCEE-EEecCCeEEEEEcCCceEEe--eeecCccccCeEECC-CCcEEEEECCCcEEEEe-cCC-c-EEEeeccCCccc
Q 017317 87 NGVLY-TATRDGWIKRLHKNGTWENW--KLIGGDTLLGITTTQ-ENEILVCDADKGLLKVT-EEG-V-TVLASHVNGSRI 159 (373)
Q Consensus 87 ~G~l~-v~~~~g~I~~~~~~g~~~~~--~~~~~~p~~gl~~d~-~g~L~va~~~~gl~~~~-~~g-~-~~l~~~~~~~~~ 159 (373)
++.+| .......|.+...++..... ....-.+- +++.|- .+.+|-.+.......+. .+| . ..+.... .
T Consensus 448 ~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~-~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~----l 522 (877)
T KOG1215|consen 448 NNRIYWADLSDEKICRASQDGSSECELCGDGLCIPE-GLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKD----L 522 (877)
T ss_pred CCEEEEEeccCCeEeeeccCCCccceEeccCccccC-cEEEEeccCCceecccCCceeEEEEccCCceeEEEecC----C
Confidence 44555 33355667666655543322 22234566 888884 44688877654443333 345 2 3333221 1
Q ss_pred cccceeEEcCC-CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-ecCCCCcceEEEccCCCEEEEEeC
Q 017317 160 NLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKDEDYLVVCET 237 (373)
Q Consensus 160 ~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~~gi~~~~dg~~l~v~~~ 237 (373)
..+..++++|- |.+|.++.+. . -++-|-..++.....+ ..+...|+|++++-..+.+||++.
T Consensus 523 ~~~r~~~v~p~~g~~~wtd~~~---------------~-~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~ 586 (877)
T KOG1215|consen 523 DLPRSIAVDPEKGLMFWTDWGQ---------------P-PRIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADA 586 (877)
T ss_pred CCccceeeccccCeeEEecCCC---------------C-chhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcc
Confidence 35678899974 6788888651 1 1344444443333333 334688999999988888999998
Q ss_pred CCC-eEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEec
Q 017317 238 FKF-RCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ 283 (373)
Q Consensus 238 ~~~-~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~ 283 (373)
... .+...+.+|..-. .........|..++.- ++++|-..+.
T Consensus 587 ~~~~~i~~~~~~g~~r~---~~~~~~~~~p~~~~~~-~~~iyw~d~~ 629 (877)
T KOG1215|consen 587 KLDYTIESANMDGQNRR---VVDSEDLPHPFGLSVF-EDYIYWTDWS 629 (877)
T ss_pred cCCcceeeeecCCCceE---EeccccCCCceEEEEe-cceeEEeecc
Confidence 777 6888877764321 2222233456666653 3345444443
No 291
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=81.97 E-value=34 Score=29.88 Aligned_cols=73 Identities=10% Similarity=0.040 Sum_probs=43.5
Q ss_pred ccccccceeEEcCC-CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCC-CcceEEE-ccCCCEEE
Q 017317 157 SRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF-FANGVAL-SKDEDYLV 233 (373)
Q Consensus 157 ~~~~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~-~~~gi~~-~~dg~~l~ 233 (373)
.+...+|+|-.||. +.|+++.+ .+.+|.+|.++|+++....+.. .-..++. ...+ -+
T Consensus 112 ~evPeINam~ldP~enSi~~AgG------------------D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~--qi 171 (325)
T KOG0649|consen 112 VEVPEINAMWLDPSENSILFAGG------------------DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG--QI 171 (325)
T ss_pred ccCCccceeEeccCCCcEEEecC------------------CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc--ce
Confidence 34557899999965 67888753 4789999999999887654421 1222322 2222 23
Q ss_pred EEeCCCCeEEEEEecC
Q 017317 234 VCETFKFRCLKYWLKG 249 (373)
Q Consensus 234 v~~~~~~~i~~~~~~~ 249 (373)
.+...++.+..++.+.
T Consensus 172 lsG~EDGtvRvWd~kt 187 (325)
T KOG0649|consen 172 LSGAEDGTVRVWDTKT 187 (325)
T ss_pred eecCCCccEEEEeccc
Confidence 3333444555566543
No 292
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=81.87 E-value=43 Score=30.95 Aligned_cols=54 Identities=20% Similarity=0.323 Sum_probs=31.0
Q ss_pred CeEECCCCc-EEEEECCCcEEEEe-cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCC
Q 017317 121 GITTTQENE-ILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVAS 179 (373)
Q Consensus 121 gl~~d~~g~-L~va~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~ 179 (373)
.+++-|.|. +.-+..++.+..++ .+| +..+... ...+.-+.+..||.|.-+.+.
T Consensus 198 ~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h-----~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 198 SVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH-----SEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred eEEEEecCCeeeecccccceeEEecccceeEEeccCc-----hHhEEEEEecCCeeEEEecCC
Confidence 445555553 33344455676666 667 3333221 125567788889999877654
No 293
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.50 E-value=24 Score=32.80 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=49.6
Q ss_pred EEecCCeEEEEEc-CCc--eEEeeeecCccccCeEECCCCc-EEEEECCCcEEEEe-cCCcEEEeeccCCccccccceeE
Q 017317 92 TATRDGWIKRLHK-NGT--WENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEGVTVLASHVNGSRINLADDLI 166 (373)
Q Consensus 92 v~~~~g~I~~~~~-~g~--~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g~~~l~~~~~~~~~~~~~~l~ 166 (373)
..+..+.+..||. .|+ +..+. ....|+..+...++|+ +|+++...-+..|| ..+. .+.....|. ...+.+|.
T Consensus 221 t~T~~hqvR~YDt~~qRRPV~~fd-~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k-l~g~~~kg~-tGsirsih 297 (412)
T KOG3881|consen 221 TITRYHQVRLYDTRHQRRPVAQFD-FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK-LLGCGLKGI-TGSIRSIH 297 (412)
T ss_pred EEecceeEEEecCcccCcceeEec-cccCcceeeeecCCCcEEEEecccchhheecccCce-eeccccCCc-cCCcceEE
Confidence 4556677778873 332 11221 2234443777788886 78888766788898 5441 111112221 12577899
Q ss_pred EcCCCcEEEEeC
Q 017317 167 AATDGSIYFSVA 178 (373)
Q Consensus 167 ~~~dG~l~v~~~ 178 (373)
.+|.+.+..+.+
T Consensus 298 ~hp~~~~las~G 309 (412)
T KOG3881|consen 298 CHPTHPVLASCG 309 (412)
T ss_pred EcCCCceEEeec
Confidence 998888877654
No 294
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=81.34 E-value=26 Score=32.04 Aligned_cols=59 Identities=10% Similarity=-0.061 Sum_probs=36.5
Q ss_pred cCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecC-----CCCCCCceeECCCCCEEEEEecCC
Q 017317 227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN-----LPGGPDNIKLAPDGSFWIAILQLS 285 (373)
Q Consensus 227 ~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~g~p~~i~~d~dG~lwva~~~~~ 285 (373)
-||+++++........+.+.++.-+.+......-+ ...++-|+.--..|++|+++..+.
T Consensus 141 fDGe~VLvvsR~~~~pHLLkvsdLK~g~inpI~LdlTgVtgGTf~yNmgAl~nGH~Y~asLSG~ 204 (442)
T PF15416_consen 141 FDGEHVLVVSRGTTKPHLLKVSDLKAGEINPIPLDLTGVTGGTFSYNMGALVNGHSYLASLSGG 204 (442)
T ss_pred CCCcEEEEEecCCCCceeeehhHhhcCCccceeeecccccCcccccchhhhcCCeEEEEeccCC
Confidence 37888888877665666665543333332221111 123677787778999999998763
No 295
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=81.22 E-value=43 Score=30.50 Aligned_cols=121 Identities=11% Similarity=0.135 Sum_probs=63.2
Q ss_pred CeEECCCCcEEEEECC-CcEEEEe-cCC-cEEEeeccC-------CccccccceeEEc----CCCcEEEEeCCccccccc
Q 017317 121 GITTTQENEILVCDAD-KGLLKVT-EEG-VTVLASHVN-------GSRINLADDLIAA----TDGSIYFSVASTKFGLHN 186 (373)
Q Consensus 121 gl~~d~~g~L~va~~~-~gl~~~~-~~g-~~~l~~~~~-------~~~~~~~~~l~~~----~dG~l~v~~~~~~~~~~~ 186 (373)
++..+++|++.|.... ..|+.++ ++| +........ +..+..-.+..+- .++.|-+-|-.. ..
T Consensus 148 sV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~-~~--- 223 (299)
T PF14269_consen 148 SVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNAN-SD--- 223 (299)
T ss_pred eeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCC-CC---
Confidence 7777889998887654 4588888 677 544322210 1112222333333 445554444210 00
Q ss_pred cccccccccCCceEEEEeCCCCeEEEeecCCCCcc--------eEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317 187 WGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN--------GVALSKDEDYLVVCETFKFRCLKYWLKG 249 (373)
Q Consensus 187 ~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~--------gi~~~~dg~~l~v~~~~~~~i~~~~~~~ 249 (373)
........+.++.+|+.++..+.+..-...+. .+..-+.|+ ++++.....++..|+.+|
T Consensus 224 ---~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn-~li~~g~~g~~~E~~~~G 290 (299)
T PF14269_consen 224 ---FNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGN-VLIGWGNNGRISEFTPDG 290 (299)
T ss_pred ---CCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCC-EEEecCCCceEEEECCCC
Confidence 01122345788999988666554332111121 244556666 667766666666666444
No 296
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=81.20 E-value=36 Score=31.97 Aligned_cols=148 Identities=13% Similarity=0.091 Sum_probs=83.5
Q ss_pred CCcceEEEecCCCEEEE-ecCCeEEEEE-cCCceEEeeeecC-ccccCeEECCCCcEEEE-ECCCcEEE-Ee-cCC--cE
Q 017317 77 NGPEDVCVDRNGVLYTA-TRDGWIKRLH-KNGTWENWKLIGG-DTLLGITTTQENEILVC-DADKGLLK-VT-EEG--VT 148 (373)
Q Consensus 77 ~~P~~ia~d~~G~l~v~-~~~g~I~~~~-~~g~~~~~~~~~~-~p~~gl~~d~~g~L~va-~~~~gl~~-~~-~~g--~~ 148 (373)
..-+++++.++...|++ +.+|.|..++ ...+.+.+....+ .+. .+.+++...|.+. ...+ +++ +| ++| +.
T Consensus 181 eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk-svdWHP~kgLiasgskDn-lVKlWDprSg~cl~ 258 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK-SVDWHPTKGLIASGSKDN-LVKLWDPRSGSCLA 258 (464)
T ss_pred hhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc-eeccCCccceeEEccCCc-eeEeecCCCcchhh
Confidence 34567888887777754 4778787777 3333333322223 355 7888876655544 3334 555 45 566 22
Q ss_pred EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCC-CeEEEeecCCCCcceEEEcc
Q 017317 149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILLDSLFFANGVALSK 227 (373)
Q Consensus 149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~~~~~~~~~~gi~~~~ 227 (373)
.+.. -.+.+.++.+.++|+...+.+. .-.+-.||..+ ++...+...-.....++++|
T Consensus 259 tlh~-----HKntVl~~~f~~n~N~Llt~sk-----------------D~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP 316 (464)
T KOG0284|consen 259 TLHG-----HKNTVLAVKFNPNGNWLLTGSK-----------------DQSCKVFDIRTMKELFTYRGHKKDVTSLTWHP 316 (464)
T ss_pred hhhh-----ccceEEEEEEcCCCCeeEEccC-----------------CceEEEEehhHhHHHHHhhcchhhheeecccc
Confidence 2211 1235667889999976665432 22344455431 11211111122345677788
Q ss_pred CCCEEEEEeCCCCeEEEEEec
Q 017317 228 DEDYLVVCETFKFRCLKYWLK 248 (373)
Q Consensus 228 dg~~l~v~~~~~~~i~~~~~~ 248 (373)
--..|+++....+.|+.+.+.
T Consensus 317 ~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 317 LNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred ccccceeeccCCCceEEEecc
Confidence 777788888888888877654
No 297
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=80.79 E-value=3 Score=24.93 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=17.5
Q ss_pred eEEEecCCCEEEEecCCeEEEEEc
Q 017317 81 DVCVDRNGVLYTATRDGWIKRLHK 104 (373)
Q Consensus 81 ~ia~d~~G~l~v~~~~g~I~~~~~ 104 (373)
+++++ +|.+|+++.+|.++.+|.
T Consensus 16 ~~~v~-~g~vyv~~~dg~l~ald~ 38 (40)
T PF13570_consen 16 SPAVA-GGRVYVGTGDGNLYALDA 38 (40)
T ss_dssp --EEC-TSEEEEE-TTSEEEEEET
T ss_pred CCEEE-CCEEEEEcCCCEEEEEeC
Confidence 34666 789999999999999984
No 298
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=80.60 E-value=36 Score=29.25 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=17.5
Q ss_pred CCcceEEEecCCCEE-EEecCCeEEEE
Q 017317 77 NGPEDVCVDRNGVLY-TATRDGWIKRL 102 (373)
Q Consensus 77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~ 102 (373)
+.-+++++.|.|.|| +|+ +..-+++
T Consensus 33 qairav~fhp~g~lyavgs-nskt~ri 58 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGS-NSKTFRI 58 (350)
T ss_pred hheeeEEecCCCceEEecc-CCceEEE
Confidence 557889999999999 555 3334443
No 299
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=80.48 E-value=4.2 Score=41.95 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=48.9
Q ss_pred cceEEEecCCCEEEEecCCeEEEEEcCCc-eEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe
Q 017317 79 PEDVCVDRNGVLYTATRDGWIKRLHKNGT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT 143 (373)
Q Consensus 79 P~~ia~d~~G~l~v~~~~g~I~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~ 143 (373)
=.++|.+.+|.|-||+.+|.|..++..|+ .++.....|.|..||.+..||+-.+|+-..-|+.++
T Consensus 580 Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 580 FSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred ceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 35688888999999999999999996653 233333446776599999999988887666676665
No 300
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=79.57 E-value=4.4 Score=22.74 Aligned_cols=23 Identities=30% Similarity=0.591 Sum_probs=17.6
Q ss_pred cCCCEEEEecCCeEEEEE-cCCce
Q 017317 86 RNGVLYTATRDGWIKRLH-KNGTW 108 (373)
Q Consensus 86 ~~G~l~v~~~~g~I~~~~-~~g~~ 108 (373)
.+|.+|+++.+|.++.++ .+|+.
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~ 28 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEI 28 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcE
Confidence 367888888888899888 46654
No 301
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=79.47 E-value=65 Score=31.52 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=70.3
Q ss_pred ceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCC-CeEEEEEecCCCCcceeEEecCCCCCCCc-eeECCCC
Q 017317 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK-FRCLKYWLKGESKEQTEIFVENLPGGPDN-IKLAPDG 275 (373)
Q Consensus 198 g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~g~p~~-i~~d~dG 275 (373)
-.||.++.++....+-+.+-.-...+.|+++++..-|+-... ..+..|++++. .+. +.+..|.| +.+.+.|
T Consensus 251 q~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~------~v~-df~egpRN~~~fnp~g 323 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK------PVF-DFPEGPRNTAFFNPHG 323 (566)
T ss_pred ceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC------EeE-eCCCCCccceEECCCC
Confidence 368888877545444444444457899999998666665433 56778887664 222 23334655 6789999
Q ss_pred CE-EEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEE
Q 017317 276 SF-WIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKF 334 (373)
Q Consensus 276 ~l-wva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~ 334 (373)
+| .+|..+...+.++++.-.. ++.+.+. ......++.+.|+|+.+..-
T Consensus 324 ~ii~lAGFGNL~G~mEvwDv~n--~K~i~~~---------~a~~tt~~eW~PdGe~flTA 372 (566)
T KOG2315|consen 324 NIILLAGFGNLPGDMEVWDVPN--RKLIAKF---------KAANTTVFEWSPDGEYFLTA 372 (566)
T ss_pred CEEEEeecCCCCCceEEEeccc--hhhcccc---------ccCCceEEEEcCCCcEEEEE
Confidence 85 5566665555555444322 3333311 22334567788888876543
No 302
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.30 E-value=72 Score=31.88 Aligned_cols=90 Identities=11% Similarity=0.121 Sum_probs=54.7
Q ss_pred EEecCCCEEEEecCCeEEEEE-cCC-ceEEeeeecCccccCeEECCCCcEEEEECCCcEE-EEe-cCC--cEEEeeccCC
Q 017317 83 CVDRNGVLYTATRDGWIKRLH-KNG-TWENWKLIGGDTLLGITTTQENEILVCDADKGLL-KVT-EEG--VTVLASHVNG 156 (373)
Q Consensus 83 a~d~~G~l~v~~~~g~I~~~~-~~g-~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~-~~~-~~g--~~~l~~~~~~ 156 (373)
.+.+..-+.+|+.+..|.+++ .++ +++.|........ .|+.+|..-.++..+..-++ .++ +.+ .+... .|
T Consensus 63 fiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR-~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf---eG 138 (794)
T KOG0276|consen 63 FIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIR-SIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF---EG 138 (794)
T ss_pred eeeccceEEEecCCceEEEEecccceeeEEeecccccee-eeeecCCCCeEEecCCccEEEEeeccCceeeeeEE---cC
Confidence 344455666888999999988 334 5666666666677 88888876555554433333 344 444 22222 22
Q ss_pred ccccccceeEEcCCC-cEEEEe
Q 017317 157 SRINLADDLIAATDG-SIYFSV 177 (373)
Q Consensus 157 ~~~~~~~~l~~~~dG-~l~v~~ 177 (373)
..+++..+++.|+. +-+.+.
T Consensus 139 -H~HyVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 139 -HEHYVMQVAFNPKDPNTFASA 159 (794)
T ss_pred -cceEEEEEEecCCCccceeee
Confidence 23578889998865 455543
No 303
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=79.09 E-value=45 Score=29.43 Aligned_cols=152 Identities=19% Similarity=0.206 Sum_probs=71.1
Q ss_pred eEEEEeCCCCeEEEee-------cCCCCcceEEEccC---CCEEEEEeCCCCeEEEEEecCCCCcc-----eeEEecCCC
Q 017317 199 KLLKYDPSLNETSILL-------DSLFFANGVALSKD---EDYLVVCETFKFRCLKYWLKGESKEQ-----TEIFVENLP 263 (373)
Q Consensus 199 ~l~~~d~~~~~~~~~~-------~~~~~~~gi~~~~d---g~~l~v~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~ 263 (373)
.+|.+||+.+..+.+. .....+.|+++..+ |.+-.+.+...+-+..|.+-....+. .+.|. .+
T Consensus 127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk--~~ 204 (364)
T COG4247 127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFK--IP 204 (364)
T ss_pred EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeee--cC
Confidence 4677777765555443 33556778888654 34323333344566677653222121 22221 22
Q ss_pred CCCCcee-ECCCCCEEEEEecCCCchhhhccC--ChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCc
Q 017317 264 GGPDNIK-LAPDGSFWIAILQLSSPGLEFVHT--SKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGK 340 (373)
Q Consensus 264 g~p~~i~-~d~dG~lwva~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~ 340 (373)
..-.|+. -|.-|.||++.... .+|.+-+. .-..++++.++...-.. .....|+-+-+-++|+=-...+. .|.
T Consensus 205 tQTEG~VaDdEtG~LYIaeEdv--aiWK~~Aep~~G~~g~~idr~~d~~~L--tdDvEGltiYy~pnGkGYL~aSS-QGn 279 (364)
T COG4247 205 TQTEGMVADDETGFLYIAEEDV--AIWKYEAEPNRGNTGRLIDRIKDLSYL--TDDVEGLTIYYGPNGKGYLLASS-QGN 279 (364)
T ss_pred CcccceeeccccceEEEeeccc--eeeecccCCCCCCccchhhhhcCchhh--cccccccEEEEcCCCcEEEEEec-CCC
Confidence 3334444 45678999987543 22333222 12234444443321100 12234555666677765443332 222
Q ss_pred eecceeEEEEe-CCEEEEeeC
Q 017317 341 VMSFVTSALEF-DDHLYLGSL 360 (373)
Q Consensus 341 ~~~~~~~~~~~-~g~L~vgs~ 360 (373)
....+... +++-|+|++
T Consensus 280 ---Ntya~y~ReG~N~YVgsF 297 (364)
T COG4247 280 ---NTYAAYTREGNNDYVGSF 297 (364)
T ss_pred ---ceEEEEEeeCCCceEEEE
Confidence 12222223 456777764
No 304
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=78.71 E-value=37 Score=33.84 Aligned_cols=68 Identities=6% Similarity=0.128 Sum_probs=36.8
Q ss_pred CCcCCcceEEEecCCCEEEEe-cCCeEEEEEc-CC-ceEEeeeecCccccCeEECCCCcEEEEECCCcEEEE
Q 017317 74 GILNGPEDVCVDRNGVLYTAT-RDGWIKRLHK-NG-TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV 142 (373)
Q Consensus 74 g~~~~P~~ia~d~~G~l~v~~-~~g~I~~~~~-~g-~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~ 142 (373)
|+..+-.++|..+.|.++++. -.+-|..+|+ .+ +...+.....+.. .+.++.||+-.+.....|.+++
T Consensus 169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr-~ll~~dDGt~~ls~sSDgtIrl 239 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVR-VLLVNDDGTRLLSASSDGTIRL 239 (735)
T ss_pred CCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceE-EEEEcCCCCeEeecCCCceEEe
Confidence 444455567777777788654 3445556663 22 2222222234455 6778889964444333454444
No 305
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=78.19 E-value=62 Score=30.51 Aligned_cols=81 Identities=16% Similarity=0.023 Sum_probs=44.8
Q ss_pred ceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEec--CCCC-CCCceeECCC
Q 017317 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE--NLPG-GPDNIKLAPD 274 (373)
Q Consensus 198 g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~g-~p~~i~~d~d 274 (373)
..|-.+|..+............-..+.++.+|..+..+ +..+.+..+|..+... ...|.. ...+ --....++++
T Consensus 322 kkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~eI--~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTKEI--RQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred cceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeecccccE--EEEeeccccccccccceeEECCC
Confidence 45666675444443333333456678888999877777 5567788888654322 122211 1111 1233677888
Q ss_pred CCEEEEE
Q 017317 275 GSFWIAI 281 (373)
Q Consensus 275 G~lwva~ 281 (373)
|.+..|.
T Consensus 399 ~~YvaAG 405 (459)
T KOG0288|consen 399 GSYVAAG 405 (459)
T ss_pred Cceeeec
Confidence 7655553
No 306
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=77.07 E-value=50 Score=28.83 Aligned_cols=110 Identities=13% Similarity=0.130 Sum_probs=61.8
Q ss_pred ccccCeEEC-CCCcEEEEECCCcEEEEe-cCC-cEEEeeccCCccc-cccceeEEcCC-CcEEEEeCCcccccccccccc
Q 017317 117 DTLLGITTT-QENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRI-NLADDLIAATD-GSIYFSVASTKFGLHNWGLDL 191 (373)
Q Consensus 117 ~p~~gl~~d-~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~~-~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~ 191 (373)
... ||.+. .+|+||-.....+||.+| .+| .+.+....-...+ ....++.|.|- .+|-|-..
T Consensus 28 ~l~-GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~------------- 93 (236)
T PF14339_consen 28 SLV-GIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSN------------- 93 (236)
T ss_pred eEE-EEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEcc-------------
Confidence 445 77766 467898776667899999 677 5555211111111 12345566653 47766532
Q ss_pred ccccCCceEEEEeCCCCeEEEeecCCCC----------cc--eEEEc-----cC-CCEEEEEeCCCCeEEEE
Q 017317 192 LEAKPHGKLLKYDPSLNETSILLDSLFF----------AN--GVALS-----KD-EDYLVVCETFKFRCLKY 245 (373)
Q Consensus 192 ~~~~~~g~l~~~d~~~~~~~~~~~~~~~----------~~--gi~~~-----~d-g~~l~v~~~~~~~i~~~ 245 (373)
.|.-+|++++++.+......+.. |. +.++. +. ...||-.+...+.+++-
T Consensus 94 -----~GqNlR~npdtGav~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q 160 (236)
T PF14339_consen 94 -----TGQNLRLNPDTGAVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQ 160 (236)
T ss_pred -----CCcEEEECCCCCCceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEe
Confidence 36788899988875433322222 21 22222 22 35678888777766665
No 307
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=76.79 E-value=50 Score=28.77 Aligned_cols=133 Identities=13% Similarity=0.111 Sum_probs=76.4
Q ss_pred CeEECCCCcEEEEECC-CcEEEEe-cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccC
Q 017317 121 GITTTQENEILVCDAD-KGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP 196 (373)
Q Consensus 121 gl~~d~~g~L~va~~~-~gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~ 196 (373)
...+..+|+.-++-.. ..+..++ ..| ++.+.. . .+.+-+++...|..-+.+.++
T Consensus 22 avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg----h-G~EVlD~~~s~Dnskf~s~Gg----------------- 79 (307)
T KOG0316|consen 22 AVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG----H-GHEVLDAALSSDNSKFASCGG----------------- 79 (307)
T ss_pred EEEEccCCCEEEEcCCCceEEeecccccceeeeecC----C-CceeeeccccccccccccCCC-----------------
Confidence 5667777875554332 3344445 345 333321 1 123445566556555554432
Q ss_pred CceEEEEeCCCCeEEEe-ecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCc-eeECCC
Q 017317 197 HGKLLKYDPSLNETSIL-LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDN-IKLAPD 274 (373)
Q Consensus 197 ~g~l~~~d~~~~~~~~~-~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~-i~~d~d 274 (373)
.-.++.+|-.+|++... .......|.+.|..+.. +.++.+....+..+|.........+++.+ .-|+ ..+|-.
T Consensus 80 Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQilde----a~D~V~Si~v~ 154 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDE----AKDGVSSIDVA 154 (307)
T ss_pred CceEEEEEcccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhh----hcCceeEEEec
Confidence 34688888888876543 34456678899987766 88888888888888876554444433332 2333 335555
Q ss_pred CCEEEE
Q 017317 275 GSFWIA 280 (373)
Q Consensus 275 G~lwva 280 (373)
++..++
T Consensus 155 ~heIva 160 (307)
T KOG0316|consen 155 EHEIVA 160 (307)
T ss_pred ccEEEe
Confidence 554444
No 308
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=74.54 E-value=81 Score=30.95 Aligned_cols=83 Identities=13% Similarity=0.138 Sum_probs=38.9
Q ss_pred CceEEEEeCCCCeEEEeecCCCCcceEE---EccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECC
Q 017317 197 HGKLLKYDPSLNETSILLDSLFFANGVA---LSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP 273 (373)
Q Consensus 197 ~g~l~~~d~~~~~~~~~~~~~~~~~gi~---~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~ 273 (373)
.|.|+.|+...++..........++++. ...+-..+|-+ ....++..++...... +..+- ..+-.+..+++.+
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~-~ad~~v~~~~~~~~~~--~~~~~-~~~~~~~sl~is~ 154 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSV-GADLKVVYILEKEKVI--IRIWK-EQKPLVSSLCISP 154 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEec-CCceeEEEEeccccee--eeeec-cCCCccceEEEcC
Confidence 4667777766666665444333333322 22222222222 2233444444332211 12222 1223577899999
Q ss_pred CCCEEEEEec
Q 017317 274 DGSFWIAILQ 283 (373)
Q Consensus 274 dG~lwva~~~ 283 (373)
||.+.+....
T Consensus 155 D~~~l~~as~ 164 (541)
T KOG4547|consen 155 DGKILLTASR 164 (541)
T ss_pred CCCEEEeccc
Confidence 9987765443
No 309
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=74.51 E-value=67 Score=29.09 Aligned_cols=171 Identities=18% Similarity=0.141 Sum_probs=86.3
Q ss_pred CCCEEEEecCCeEEEEE---cCCc-eEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeeccCCcccc
Q 017317 87 NGVLYTATRDGWIKRLH---KNGT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRIN 160 (373)
Q Consensus 87 ~G~l~v~~~~g~I~~~~---~~g~-~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~~~ 160 (373)
...+|++.++.++..+| ++.- ...+....+... +..+. ..-.||++...|++.+| .+- --+++...... ..
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyay-gv~vs-Gn~aYVadlddgfLivdvsdpssP~lagrya~~-~~ 172 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAY-GVYVS-GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALP-GG 172 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEE-EEEec-CCEEEEeeccCcEEEEECCCCCCceeeeeeccC-CC
Confidence 56889988888888888 2221 111122223333 55553 23589999878999998 433 22332221111 11
Q ss_pred ccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CC--CcceEEEccCCCEEEEEeC
Q 017317 161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LF--FANGVALSKDEDYLVVCET 237 (373)
Q Consensus 161 ~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~--~~~gi~~~~dg~~l~v~~~ 237 (373)
...++++.- .+-|++... ++|..+|-..-.--++... .. ...++..+++ +.|++.-
T Consensus 173 d~~~v~ISG-n~AYvA~~d------------------~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vvy 231 (370)
T COG5276 173 DTHDVAISG-NYAYVAWRD------------------GGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVVY 231 (370)
T ss_pred CceeEEEec-CeEEEEEeC------------------CCeEEEEccCCCCCeEEEEEecCCceEEEEecCC--eeEEEEc
Confidence 224555542 267888643 5677777543221122211 11 2334445444 4666653
Q ss_pred CCCeEEEEEecCCCCcceeEEecCCCCCCCce--eECCCCCEEEEEecC
Q 017317 238 FKFRCLKYWLKGESKEQTEIFVENLPGGPDNI--KLAPDGSFWIAILQL 284 (373)
Q Consensus 238 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i--~~d~dG~lwva~~~~ 284 (373)
+.++...+.++++..+ .+..-.+..|.++ ..-++...|++....
T Consensus 232 -~egvlivd~s~~ssp~--~~gsyet~~p~~~s~v~Vs~~~~Yvadga~ 277 (370)
T COG5276 232 -DEGVLIVDVSGPSSPT--VFGSYETSNPVSISTVPVSGEYAYVADGAK 277 (370)
T ss_pred -ccceEEEecCCCCCce--EeeccccCCcccccceecccceeeeecccc
Confidence 3467777776654322 2322223345444 112444678876653
No 310
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.61 E-value=1e+02 Score=30.84 Aligned_cols=56 Identities=14% Similarity=0.187 Sum_probs=30.2
Q ss_pred eEECCCCcEEEEECCCcEEEEe-c---------CC-cEEEeeccCCccccccceeEEcCCCcEEEEeC
Q 017317 122 ITTTQENEILVCDADKGLLKVT-E---------EG-VTVLASHVNGSRINLADDLIAATDGSIYFSVA 178 (373)
Q Consensus 122 l~~d~~g~L~va~~~~gl~~~~-~---------~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~ 178 (373)
+..|+.|+++-+.. +.+...+ . +| .-.+....-|...-+|..|+..|+|++.+...
T Consensus 304 vsMd~~gKIiwa~~-~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg 370 (794)
T KOG0276|consen 304 VSMDSNGKIIWAVH-SEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG 370 (794)
T ss_pred eeecCCccEEEEcC-ceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEec
Confidence 66788886655432 2233333 1 22 22222222233334678888999998877654
No 311
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=73.59 E-value=8.3 Score=36.69 Aligned_cols=60 Identities=28% Similarity=0.304 Sum_probs=32.1
Q ss_pred ccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCC-eEEE----eecCC---------------CC
Q 017317 161 LADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSI----LLDSL---------------FF 219 (373)
Q Consensus 161 ~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~~----~~~~~---------------~~ 219 (373)
.+.+|.++.|. .|||++.. .|.|..||-..- ..+. ...+. ..
T Consensus 313 LitDI~iSlDDrfLYvs~W~-----------------~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~Gg 375 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWL-----------------HGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGG 375 (461)
T ss_dssp ----EEE-TTS-EEEEEETT-----------------TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S-
T ss_pred ceEeEEEccCCCEEEEEccc-----------------CCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCC
Confidence 46788888877 59999875 578888885432 2211 11111 13
Q ss_pred cceEEEccCCCEEEEEeC
Q 017317 220 ANGVALSKDEDYLVVCET 237 (373)
Q Consensus 220 ~~gi~~~~dg~~l~v~~~ 237 (373)
|+=+.+|.||++|||+++
T Consensus 376 PqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 376 PQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp ---EEE-TTSSEEEEE--
T ss_pred CCeEEEccCCeEEEEEee
Confidence 566899999999999976
No 312
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=73.40 E-value=65 Score=28.45 Aligned_cols=145 Identities=10% Similarity=0.048 Sum_probs=71.7
Q ss_pred ccccCeEECCCCcEEEEE----CCCcEEEEecCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCcccccccccccc
Q 017317 117 DTLLGITTTQENEILVCD----ADKGLLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDL 191 (373)
Q Consensus 117 ~p~~gl~~d~~g~L~va~----~~~gl~~~~~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~ 191 (373)
.+. ..++.++|..+.+. ....|+.....+ ...+. .+. ....-.++++|.+|+.+..
T Consensus 25 ~~~-s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~---~g~---~l~~PS~d~~g~~W~v~~~------------ 85 (253)
T PF10647_consen 25 DVT-SPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL---TGG---SLTRPSWDPDGWVWTVDDG------------ 85 (253)
T ss_pred ccc-ceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec---cCC---ccccccccCCCCEEEEEcC------------
Confidence 345 77888888755432 223355444333 33332 122 2234478999999998653
Q ss_pred ccccCCceEEEEeCCCCeEEE--e-ecCCC-CcceEEEccCCCEEEEEeC--CCCeEEEEEecCCCCc------ceeEEe
Q 017317 192 LEAKPHGKLLKYDPSLNETSI--L-LDSLF-FANGVALSKDEDYLVVCET--FKFRCLKYWLKGESKE------QTEIFV 259 (373)
Q Consensus 192 ~~~~~~g~l~~~d~~~~~~~~--~-~~~~~-~~~gi~~~~dg~~l~v~~~--~~~~i~~~~~~~~~~~------~~~~~~ 259 (373)
.....+++ +..+++... + ..... ....+.+|+||..+.+.-. ...+|+.--+.....+ ......
T Consensus 86 ---~~~~~~~~-~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~ 161 (253)
T PF10647_consen 86 ---SGGVRVVR-DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA 161 (253)
T ss_pred ---CCceEEEE-ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec
Confidence 11123333 222222221 1 12222 4467899999998877653 2356665543221112 111111
Q ss_pred cCCCCCCCceeECCCCCEEEEEecC
Q 017317 260 ENLPGGPDNIKLAPDGSFWIAILQL 284 (373)
Q Consensus 260 ~~~~g~p~~i~~d~dG~lwva~~~~ 284 (373)
.....-...+.-..++.|.|.....
T Consensus 162 ~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 162 PPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred ccccCcceeeeecCCCEEEEEeCCC
Confidence 1111223445556777887776543
No 313
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.60 E-value=84 Score=29.39 Aligned_cols=83 Identities=16% Similarity=0.184 Sum_probs=53.1
Q ss_pred CCceEEEEeCCCCeEEEe-ecCCCCc-ceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECC
Q 017317 196 PHGKLLKYDPSLNETSIL-LDSLFFA-NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP 273 (373)
Q Consensus 196 ~~g~l~~~d~~~~~~~~~-~~~~~~~-~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~ 273 (373)
..+.|-.||+..++.-+. .+-..+| ..+.+.|+++++|++++ ...+..||..+.+... .......|.+..|...+
T Consensus 224 ~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~-~g~l~~FD~r~~kl~g--~~~kg~tGsirsih~hp 300 (412)
T KOG3881|consen 224 RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT-KGQLAKFDLRGGKLLG--CGLKGITGSIRSIHCHP 300 (412)
T ss_pred cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc-cchhheecccCceeec--cccCCccCCcceEEEcC
Confidence 457888999885543222 1112222 46788999999999986 4578999976654322 22224456788888887
Q ss_pred CCCEEEEE
Q 017317 274 DGSFWIAI 281 (373)
Q Consensus 274 dG~lwva~ 281 (373)
.+.+...+
T Consensus 301 ~~~~las~ 308 (412)
T KOG3881|consen 301 THPVLASC 308 (412)
T ss_pred CCceEEee
Confidence 77666654
No 314
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=72.55 E-value=1e+02 Score=30.20 Aligned_cols=190 Identities=11% Similarity=0.111 Sum_probs=0.0
Q ss_pred eEEEecCCCEEEEecCCeEEEEE---cCCceEEeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe-cCC-cEEEeecc
Q 017317 81 DVCVDRNGVLYTATRDGWIKRLH---KNGTWENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG-VTVLASHV 154 (373)
Q Consensus 81 ~ia~d~~G~l~v~~~~g~I~~~~---~~g~~~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~g-~~~l~~~~ 154 (373)
+++.. ...+-.|..++.|+.+| ..-............+ ||.+.+|++.... ..++.+..+| .+- ........
T Consensus 265 ~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVC-gLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H 342 (484)
T KOG0305|consen 265 SLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVC-GLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEH 342 (484)
T ss_pred EEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceee-eeEECCCCCeeccCCCccceEeccCCCccccEEEecc
Q ss_pred CCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEE
Q 017317 155 NGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLV 233 (373)
Q Consensus 155 ~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~ 233 (373)
.+ .+.++++.| ...|..+.++ .....|..+|..++..............+.|++..+.+.
T Consensus 343 ~a----AVKA~awcP~q~~lLAsGGG---------------s~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~ 403 (484)
T KOG0305|consen 343 TA----AVKALAWCPWQSGLLATGGG---------------SADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELL 403 (484)
T ss_pred ce----eeeEeeeCCCccCceEEcCC---------------CcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEE
Q ss_pred EEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCc---eeECCCC-CEEEEEecCCCchhhhccCCh
Q 017317 234 VCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDN---IKLAPDG-SFWIAILQLSSPGLEFVHTSK 296 (373)
Q Consensus 234 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~---i~~d~dG-~lwva~~~~~~~~~~~~~~~p 296 (373)
.+......-..+| +........ .+.++..- ++..+|| .+-++..+..-.++......|
T Consensus 404 sthG~s~n~i~lw----~~ps~~~~~-~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~~ 465 (484)
T KOG0305|consen 404 STHGYSENQITLW----KYPSMKLVA-ELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDERP 465 (484)
T ss_pred EecCCCCCcEEEE----eccccceee-eecCCcceeEEEEECCCCCEEEEecccCcEEeccccCCCC
No 315
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=72.53 E-value=78 Score=28.95 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=39.7
Q ss_pred CCCcEEEEECC------CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCC
Q 017317 126 QENEILVCDAD------KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH 197 (373)
Q Consensus 126 ~~g~L~va~~~------~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~ 197 (373)
-+++|||.... ..+.++| .+. .+.+.. .+..+ .....++.-++.||+-.+.. ....
T Consensus 122 ~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~~--r~~~~~~~~~~~iYv~GG~~-------------~~~~ 185 (323)
T TIGR03548 122 KDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPD-FPGEP--RVQPVCVKLQNELYVFGGGS-------------NIAY 185 (323)
T ss_pred ECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCC-CCCCC--CCcceEEEECCEEEEEcCCC-------------Cccc
Confidence 36789986331 2477788 444 554432 11111 11223334578899875421 0011
Q ss_pred ceEEEEeCCCCeEEEee
Q 017317 198 GKLLKYDPSLNETSILL 214 (373)
Q Consensus 198 g~l~~~d~~~~~~~~~~ 214 (373)
..+++||+++.+.+.+.
T Consensus 186 ~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 186 TDGYKYSPKKNQWQKVA 202 (323)
T ss_pred cceEEEecCCCeeEECC
Confidence 24689999988887664
No 316
>PRK10115 protease 2; Provisional
Probab=70.37 E-value=1.4e+02 Score=30.90 Aligned_cols=51 Identities=8% Similarity=-0.003 Sum_probs=32.1
Q ss_pred ceEEEEeCCCCeEE-EeecCCCCcceEEEccCCCEEEEEeCC-----CCeEEEEEecCC
Q 017317 198 GKLLKYDPSLNETS-ILLDSLFFANGVALSKDEDYLVVCETF-----KFRCLKYWLKGE 250 (373)
Q Consensus 198 g~l~~~d~~~~~~~-~~~~~~~~~~gi~~~~dg~~l~v~~~~-----~~~i~~~~~~~~ 250 (373)
-.|+.+|..++... ...... ..+++|++|++.+|++... ...++++++..+
T Consensus 153 ~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 153 YGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred EEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCC
Confidence 46888888777521 111111 2468999999988887442 257788877654
No 317
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=69.99 E-value=95 Score=28.89 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=28.8
Q ss_pred EEEEEECCCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCC----CCeEEEeeCC
Q 017317 319 AAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLN----TNFIGKLPLK 371 (373)
Q Consensus 319 g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~----~~~i~~~~l~ 371 (373)
..+..++.+|+....+...+-. ...+..+...++.||+.... ...|.++++.
T Consensus 260 ~hly~~~~~~~~~~~lT~G~~~-V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 260 RHLYLYDLDGGKPRQLTSGDWE-VTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEEEEEETTSSEEEESS-SSS--EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred cEEEEEcccccceeccccCcee-ecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 3578888888876655432211 11122233334678877665 3367777765
No 318
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=69.71 E-value=16 Score=21.45 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=16.4
Q ss_pred CCEEEEecCCeEEEEE-cCCceE
Q 017317 88 GVLYTATRDGWIKRLH-KNGTWE 109 (373)
Q Consensus 88 G~l~v~~~~g~I~~~~-~~g~~~ 109 (373)
|.+|+++.+|.|+.+| .+|+..
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~ 23 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVL 23 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEE
Confidence 5678888888888888 567643
No 319
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=68.24 E-value=1e+02 Score=30.17 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=34.1
Q ss_pred CcceEEEccCCCEEEEEeCCCCeEEEEEecCCCC-cceeEEecCCCCCCCceeECCCCCEEEE
Q 017317 219 FANGVALSKDEDYLVVCETFKFRCLKYWLKGESK-EQTEIFVENLPGGPDNIKLAPDGSFWIA 280 (373)
Q Consensus 219 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~g~p~~i~~d~dG~lwva 280 (373)
.+|.++|++||++|-.+. .++-+..|+.+...+ +....|. |.--.++-.+||.+.++
T Consensus 292 ~in~f~FS~DG~~LA~VS-qDGfLRvF~fdt~eLlg~mkSYF----GGLLCvcWSPDGKyIvt 349 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVS-QDGFLRIFDFDTQELLGVMKSYF----GGLLCVCWSPDGKYIVT 349 (636)
T ss_pred cccceeEcCCCceEEEEe-cCceEEEeeccHHHHHHHHHhhc----cceEEEEEcCCccEEEe
Confidence 578999999999777664 345566676554321 1111111 22334667889876555
No 320
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=67.71 E-value=30 Score=33.99 Aligned_cols=65 Identities=12% Similarity=-0.077 Sum_probs=45.7
Q ss_pred CcceEEEec-CCCEEEEecCCeEEEEEcCCceEEeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe
Q 017317 78 GPEDVCVDR-NGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT 143 (373)
Q Consensus 78 ~P~~ia~d~-~G~l~v~~~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~ 143 (373)
.+.+.+..+ +..+.+|..||.|..+|.+-+.+......-.|. -++++++|.+++. +..+-+..+|
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~-~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPT-LIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccce-EEEEcCCCcEEEEEcCCceEEEEE
Confidence 455666666 456668999999999996555555555455688 8999999987654 4434466677
No 321
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=67.24 E-value=1e+02 Score=28.14 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=48.6
Q ss_pred ccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEE-eCCCCeE-EEeecCCCCc--ceEEEccCCCEEEEEe
Q 017317 161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY-DPSLNET-SILLDSLFFA--NGVALSKDEDYLVVCE 236 (373)
Q Consensus 161 ~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~-d~~~~~~-~~~~~~~~~~--~gi~~~~dg~~l~v~~ 236 (373)
.+..++...+|.+..+.+. .|.|.|+ |..+|.. ..+..+...+ ..++|+|+..+|-|+
T Consensus 183 ~Iacv~Ln~~Gt~vATaSt-----------------kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lavs- 244 (346)
T KOG2111|consen 183 DIACVALNLQGTLVATAST-----------------KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVS- 244 (346)
T ss_pred ceeEEEEcCCccEEEEecc-----------------CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEE-
Confidence 3556778889998777553 5787765 7666643 3344443333 468999999855555
Q ss_pred CCCCeEEEEEecCC
Q 017317 237 TFKFRCLKYWLKGE 250 (373)
Q Consensus 237 ~~~~~i~~~~~~~~ 250 (373)
+..+.++.|.+.+.
T Consensus 245 SdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 245 SDKGTLHIFSLRDT 258 (346)
T ss_pred cCCCeEEEEEeecC
Confidence 56778999987654
No 322
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=66.84 E-value=1e+02 Score=28.01 Aligned_cols=100 Identities=19% Similarity=0.168 Sum_probs=57.9
Q ss_pred CCcEEEEECCCcEEEEe-cC--CcEEEee-ccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEE
Q 017317 127 ENEILVCDADKGLLKVT-EE--GVTVLAS-HVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLL 201 (373)
Q Consensus 127 ~g~L~va~~~~gl~~~~-~~--g~~~l~~-~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~ 201 (373)
....|+++...|+..+| .+ .-+.+.. ... .....+.+ .| ..||++.. .+++
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~----gyaygv~v--sGn~aYVadld------------------dgfL 151 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD----GYAYGVYV--SGNYAYVADLD------------------DGFL 151 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCC----ceEEEEEe--cCCEEEEeecc------------------CcEE
Confidence 45799999889999988 32 2111110 011 12233333 45 58998853 3577
Q ss_pred EEeCCCCeEEEeecCCCCcce----EEEccCCCEEEEEeCCCCeEEEEEecCCCCc
Q 017317 202 KYDPSLNETSILLDSLFFANG----VALSKDEDYLVVCETFKFRCLKYWLKGESKE 253 (373)
Q Consensus 202 ~~d~~~~~~~~~~~~~~~~~g----i~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~ 253 (373)
.+|-.+-+.-+++.....+.+ +++ .|++-|++.. ++++...|+..+...
T Consensus 152 ivdvsdpssP~lagrya~~~~d~~~v~I--SGn~AYvA~~-d~GL~ivDVSnp~sP 204 (370)
T COG5276 152 IVDVSDPSSPQLAGRYALPGGDTHDVAI--SGNYAYVAWR-DGGLTIVDVSNPHSP 204 (370)
T ss_pred EEECCCCCCceeeeeeccCCCCceeEEE--ecCeEEEEEe-CCCeEEEEccCCCCC
Confidence 777655444444444444444 444 4567888864 557888888766433
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.80 E-value=1.7e+02 Score=30.57 Aligned_cols=53 Identities=23% Similarity=0.254 Sum_probs=31.4
Q ss_pred CceEEEEeCC----CCeEEEee-cCCCCcceEEEccCCCE-EEEEeCCCCeEEEEEecCCC
Q 017317 197 HGKLLKYDPS----LNETSILL-DSLFFANGVALSKDEDY-LVVCETFKFRCLKYWLKGES 251 (373)
Q Consensus 197 ~g~l~~~d~~----~~~~~~~~-~~~~~~~gi~~~~dg~~-l~v~~~~~~~i~~~~~~~~~ 251 (373)
+|.|++|..+ .+....+. .+-..-.|+++..|++. ++++.+ .+|..|.+.|..
T Consensus 146 nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt--~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 146 NGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATT--EQVMLYSLSGRT 204 (933)
T ss_pred CcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEec--ceeEEEEecCCC
Confidence 5777777533 11111222 23334479999988887 566654 458888877654
No 324
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=65.52 E-value=25 Score=32.92 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=25.6
Q ss_pred eEEEccCCCEEEEEeCCCCeEEEEEecCCC
Q 017317 222 GVALSKDEDYLVVCETFKFRCLKYWLKGES 251 (373)
Q Consensus 222 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~ 251 (373)
.+.+|-|.++||++....+-|.+||+..+.
T Consensus 316 DilISmDDRFLYvs~WLHGDirQYdIsDP~ 345 (476)
T KOG0918|consen 316 DILISLDDRFLYVSNWLHGDIRQYDISDPK 345 (476)
T ss_pred eeEEeecCcEEEEEeeeecceeeeccCCCC
Confidence 467888999999999888888999987763
No 325
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=65.10 E-value=45 Score=33.01 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=47.3
Q ss_pred ccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCe-EEEeecCCCCcceEEEccCCCEEEEEeCC
Q 017317 161 LADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-TSILLDSLFFANGVALSKDEDYLVVCETF 238 (373)
Q Consensus 161 ~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~-~~~~~~~~~~~~gi~~~~dg~~l~v~~~~ 238 (373)
.+..+.|.|.- .++|++. ..|..||..... +..+.++...-..+++++.|+.|++. +.
T Consensus 568 ~vq~v~FHPs~p~lfVaTq-------------------~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~g-s~ 627 (733)
T KOG0650|consen 568 LVQRVKFHPSKPYLFVATQ-------------------RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILG-SY 627 (733)
T ss_pred ceeEEEecCCCceEEEEec-------------------cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEe-cC
Confidence 45677888765 6778764 246667654322 22345666777899999999966665 46
Q ss_pred CCeEEEEEec
Q 017317 239 KFRCLKYWLK 248 (373)
Q Consensus 239 ~~~i~~~~~~ 248 (373)
..+++.||++
T Consensus 628 d~k~~WfDld 637 (733)
T KOG0650|consen 628 DKKMCWFDLD 637 (733)
T ss_pred CCeeEEEEcc
Confidence 7899999986
No 326
>PHA03098 kelch-like protein; Provisional
Probab=64.59 E-value=1.5e+02 Score=29.28 Aligned_cols=105 Identities=10% Similarity=0.012 Sum_probs=52.6
Q ss_pred CCCcEEEEECC-------CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccC
Q 017317 126 QENEILVCDAD-------KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP 196 (373)
Q Consensus 126 ~~g~L~va~~~-------~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~ 196 (373)
.++.||+.... ..++++| .+. ...+... .. +.... ++ +.-+|.||+..+.. ....
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-~~-~R~~~-~~-~~~~~~lyv~GG~~------------~~~~ 356 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPEL-IY-PRKNP-GV-TVFNNRIYVIGGIY------------NSIS 356 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCC-Cc-ccccc-eE-EEECCEEEEEeCCC------------CCEe
Confidence 35678875321 2467777 444 4433221 10 11111 22 22368899875431 0112
Q ss_pred CceEEEEeCCCCeEEEeecCCCCc---ceEEEccCCCEEEEEeCC------CCeEEEEEecC
Q 017317 197 HGKLLKYDPSLNETSILLDSLFFA---NGVALSKDEDYLVVCETF------KFRCLKYWLKG 249 (373)
Q Consensus 197 ~g~l~~~d~~~~~~~~~~~~~~~~---~gi~~~~dg~~l~v~~~~------~~~i~~~~~~~ 249 (373)
...+++||+.+++++.... +..| ...+. -++ .+|+.... .+.+.+|+...
T Consensus 357 ~~~v~~yd~~~~~W~~~~~-lp~~r~~~~~~~-~~~-~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 357 LNTVESWKPGESKWREEPP-LIFPRYNPCVVN-VNN-LIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred cceEEEEcCCCCceeeCCC-cCcCCccceEEE-ECC-EEEEECCcCCCCcccceEEEEeCCC
Confidence 3468999999888775432 2222 12222 233 58887531 14578888543
No 327
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=64.24 E-value=94 Score=29.26 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=23.1
Q ss_pred CCcceEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317 218 FFANGVALSKDEDYLVVCETFKFRCLKYWLKG 249 (373)
Q Consensus 218 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~ 249 (373)
..+.-++|++|++ ..++.+..+.++.+|+..
T Consensus 124 ~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 124 DDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred cchhhhhccCCCc-eeeeeeccceEEEEEecc
Confidence 3456789999998 555666778888888753
No 328
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=63.57 E-value=1.5e+02 Score=28.79 Aligned_cols=140 Identities=16% Similarity=0.108 Sum_probs=64.5
Q ss_pred CCcceEEEecCCCEEEEecCCeEEEEEcCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe--cCC-cEEEeec
Q 017317 77 NGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG-VTVLASH 153 (373)
Q Consensus 77 ~~P~~ia~d~~G~l~v~~~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~--~~g-~~~l~~~ 153 (373)
..|..+...|+|+..+-..+|....+...+-.. .. .+... ..++...++.-+.+....+..+. ++. ...+..
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~-k~--~G~g~-~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~- 107 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRN-KA--FGSGL-SFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL- 107 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTTTEE-EE--EEE-S-EEEE-TSSEEEEE-TTS-EEEEETTEE-TT------
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccCCcc-cc--cCcee-EEEEecCccEEEEECCCeEEEEEcCccccceEEcC-
Confidence 349999999999988657777766666322111 11 13334 55666666655555433343322 111 111110
Q ss_pred cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEE
Q 017317 154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLV 233 (373)
Q Consensus 154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~ 233 (373)
+ ..+..|.- |.+....+. +.|..||-++++...-.+- .....+.|+++|+.+.
T Consensus 108 ----~-~~~~~If~---G~LL~~~~~------------------~~i~~yDw~~~~~i~~i~v-~~vk~V~Ws~~g~~va 160 (443)
T PF04053_consen 108 ----P-FSVEKIFG---GNLLGVKSS------------------DFICFYDWETGKLIRRIDV-SAVKYVIWSDDGELVA 160 (443)
T ss_dssp ----S-S-EEEEE----SSSEEEEET------------------TEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEE
T ss_pred ----C-cccceEEc---CcEEEEECC------------------CCEEEEEhhHcceeeEEec-CCCcEEEEECCCCEEE
Confidence 0 01233332 765554432 4688899887654433221 1137899999999777
Q ss_pred EEeCCCCeEEEEEec
Q 017317 234 VCETFKFRCLKYWLK 248 (373)
Q Consensus 234 v~~~~~~~i~~~~~~ 248 (373)
++....--|.+|+.+
T Consensus 161 l~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 161 LVTKDSIYILKYNLE 175 (443)
T ss_dssp EE-S-SEEEEEE-HH
T ss_pred EEeCCeEEEEEecch
Confidence 775444444455543
No 329
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=62.83 E-value=95 Score=29.22 Aligned_cols=95 Identities=17% Similarity=0.173 Sum_probs=55.2
Q ss_pred cccCeEECCCCcEEEEECCCcE-EEEecCCcE--------------EEeeccCCccccccceeEEcCCCcEEEEeCCccc
Q 017317 118 TLLGITTTQENEILVCDADKGL-LKVTEEGVT--------------VLASHVNGSRINLADDLIAATDGSIYFSVASTKF 182 (373)
Q Consensus 118 p~~gl~~d~~g~L~va~~~~gl-~~~~~~g~~--------------~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~ 182 (373)
.+ .+.++++|+|.......|. +.+.+.... .+...........+.+++..+|+++.++.+.
T Consensus 68 VN-~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~--- 143 (434)
T KOG1009|consen 68 VN-VVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV--- 143 (434)
T ss_pred eE-EEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeec---
Confidence 45 8889999998876444443 333221000 1111111111235678888888877766432
Q ss_pred cccccccccccccCCceEEEEeCCCCeEEEee-cCCCCcceEEEccCCC
Q 017317 183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDED 230 (373)
Q Consensus 183 ~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~~gi~~~~dg~ 230 (373)
...++.+|...|+..... +.-..++|++++|-.+
T Consensus 144 --------------dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 144 --------------DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ 178 (434)
T ss_pred --------------cceEEEEEeccceeEeeccccccccceeecchhhh
Confidence 345677777767766544 3345688999988765
No 330
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=62.37 E-value=1.9e+02 Score=29.65 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=21.8
Q ss_pred cCCcceEEEecCCCEE-EEecCCeEEEEE
Q 017317 76 LNGPEDVCVDRNGVLY-TATRDGWIKRLH 103 (373)
Q Consensus 76 ~~~P~~ia~d~~G~l~-v~~~~g~I~~~~ 103 (373)
-.+-+++++.|+|.-. .|+..|.+.+++
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~ 487 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYD 487 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEE
Confidence 4567889999988766 567778888877
No 331
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=61.49 E-value=1.3e+02 Score=27.45 Aligned_cols=108 Identities=4% Similarity=-0.084 Sum_probs=49.7
Q ss_pred CccccCeEECCCCcEEEEECCCcEEEEe-cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccc
Q 017317 116 GDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLL 192 (373)
Q Consensus 116 ~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~ 192 (373)
..+. -+.+++.|.-|+.....+|..+. ++. ...+.. + ..+..+.+...+.+.++-.
T Consensus 169 ~~at-~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~-----~-~r~l~~~~l~~~~L~vG~d-------------- 227 (362)
T KOG0294|consen 169 NKAT-LVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN-----P-KRILCATFLDGSELLVGGD-------------- 227 (362)
T ss_pred Ccce-eeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc-----c-ccceeeeecCCceEEEecC--------------
Confidence 3445 56777888744433334444443 211 111110 0 1233455555566666632
Q ss_pred cccCCceEEEEeCCCCeEEEeec-CCCCcceEE-Ec-cCCCEEEEEeCCCCeEEEEEecC
Q 017317 193 EAKPHGKLLKYDPSLNETSILLD-SLFFANGVA-LS-KDEDYLVVCETFKFRCLKYWLKG 249 (373)
Q Consensus 193 ~~~~~g~l~~~d~~~~~~~~~~~-~~~~~~gi~-~~-~dg~~l~v~~~~~~~i~~~~~~~ 249 (373)
++.+...|.+....-.... .-...-++. +. +++ +++++-+..+.|..++++-
T Consensus 228 ----~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 228 ----NEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred ----CceEEEeccCCCccceeeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEccc
Confidence 3556667765432111110 001112344 22 344 4666666667777777654
No 332
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.32 E-value=38 Score=35.88 Aligned_cols=135 Identities=13% Similarity=0.134 Sum_probs=77.8
Q ss_pred EecCCeEEEEEcCCc--eEEeeeecCc--cccCeEECCCC--cEEEEECCCc---EEEEe-c--CC-cEEEeeccCCccc
Q 017317 93 ATRDGWIKRLHKNGT--WENWKLIGGD--TLLGITTTQEN--EILVCDADKG---LLKVT-E--EG-VTVLASHVNGSRI 159 (373)
Q Consensus 93 ~~~~g~I~~~~~~g~--~~~~~~~~~~--p~~gl~~d~~g--~L~va~~~~g---l~~~~-~--~g-~~~l~~~~~~~~~ 159 (373)
++.+|++..+|...+ +..+....++ .. ++++++++ .|++|....+ |..+| + +- .+++..+ .
T Consensus 180 ~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S-~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H-----~ 253 (1049)
T KOG0307|consen 180 GSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS-VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH-----Q 253 (1049)
T ss_pred cCCCCCceeccccCCCcccccccCCCcccee-eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc-----c
Confidence 445667777773222 3333333332 34 88999888 4888865443 34444 2 22 3333111 1
Q ss_pred cccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE-eecCCCCcceEEEccCCCEEEEEeC
Q 017317 160 NLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFANGVALSKDEDYLVVCET 237 (373)
Q Consensus 160 ~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~~gi~~~~dg~~l~v~~~ 237 (373)
.++-+|...+.+ ++.++.. ..+++++.+++++++-- +-....+..-+.|.|..-.++-+..
T Consensus 254 ~GilslsWc~~D~~lllSsg-----------------kD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 254 RGILSLSWCPQDPRLLLSSG-----------------KDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAAS 316 (1049)
T ss_pred cceeeeccCCCCchhhhccc-----------------CCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhhe
Confidence 245566666655 6666654 35899999999876432 2223334455777776555666666
Q ss_pred CCCeEEEEEecCC
Q 017317 238 FKFRCLKYWLKGE 250 (373)
Q Consensus 238 ~~~~i~~~~~~~~ 250 (373)
.+++|..|.+.+.
T Consensus 317 fdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 317 FDGKISIYSLQGT 329 (1049)
T ss_pred eccceeeeeeecC
Confidence 7788888877654
No 333
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=60.99 E-value=91 Score=27.72 Aligned_cols=68 Identities=16% Similarity=0.060 Sum_probs=42.1
Q ss_pred ccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-ecCCCCcceEEEccCCCEEEEEeCCC
Q 017317 161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKDEDYLVVCETFK 239 (373)
Q Consensus 161 ~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~~gi~~~~dg~~l~v~~~~~ 239 (373)
+++++.+-+|+.|..+.+. .+++..|.=.+.+.-.+ .-.-...|.++|+||-+ +..+.+.+
T Consensus 253 Gv~gvrIRpD~KIlATAGW-----------------D~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~-lmAaaskD 314 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGW-----------------DHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE-LMAAASKD 314 (323)
T ss_pred CccceEEccCCcEEeeccc-----------------CCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc-hhhhccCC
Confidence 4678899999999887654 24444444333332211 11124568899999966 66666666
Q ss_pred CeEEEEE
Q 017317 240 FRCLKYW 246 (373)
Q Consensus 240 ~~i~~~~ 246 (373)
.+|..+.
T Consensus 315 ~rISLWk 321 (323)
T KOG0322|consen 315 ARISLWK 321 (323)
T ss_pred ceEEeee
Confidence 7776654
No 334
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=60.75 E-value=1.4e+02 Score=27.55 Aligned_cols=53 Identities=13% Similarity=0.051 Sum_probs=32.9
Q ss_pred CceEEEEeCCCCeEE-EeecCCCCcceEEEccC-CCEEEEEeCCCCeEEEEEecC
Q 017317 197 HGKLLKYDPSLNETS-ILLDSLFFANGVALSKD-EDYLVVCETFKFRCLKYWLKG 249 (373)
Q Consensus 197 ~g~l~~~d~~~~~~~-~~~~~~~~~~gi~~~~d-g~~l~v~~~~~~~i~~~~~~~ 249 (373)
+|.+-.||+.+++.- .+...-...|++.|..+ +-+.+.+.+..+.|..||+..
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs 103 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRS 103 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeec
Confidence 578888998876533 23222334578888653 333455555667888888753
No 335
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=60.70 E-value=1.8e+02 Score=28.73 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=62.0
Q ss_pred EEecCCeEEEEE-cCCceEEeeeecC---ccccCeEE-CCCCcEEEEECCCcEEEEe-cCC--cEEEeeccCCccccccc
Q 017317 92 TATRDGWIKRLH-KNGTWENWKLIGG---DTLLGITT-TQENEILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLAD 163 (373)
Q Consensus 92 v~~~~g~I~~~~-~~g~~~~~~~~~~---~p~~gl~~-d~~g~L~va~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~~ 163 (373)
.|+..|.|+.++ ..|+.+....... ... .+.. +.-|-||-+.....+..++ .++ +.... . ....+.
T Consensus 75 lgt~~g~v~~ys~~~g~it~~~st~~h~~~v~-~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~---~--~~~~~~ 148 (541)
T KOG4547|consen 75 LGTPQGSVLLYSVAGGEITAKLSTDKHYGNVN-EILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK---E--QKPLVS 148 (541)
T ss_pred eecCCccEEEEEecCCeEEEEEecCCCCCcce-eeecccccCceEecCCceeEEEEecccceeeeeec---c--CCCccc
Confidence 567777777777 4555544333222 222 2221 2334466555544555565 444 22221 1 112466
Q ss_pred eeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceEEEc
Q 017317 164 DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALS 226 (373)
Q Consensus 164 ~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~ 226 (373)
.+++.+||.+..+.+ +.|-.+|.+++++....++...| +-++|.
T Consensus 149 sl~is~D~~~l~~as-------------------~~ik~~~~~~kevv~~ftgh~s~v~t~~f~ 193 (541)
T KOG4547|consen 149 SLCISPDGKILLTAS-------------------RQIKVLDIETKEVVITFTGHGSPVRTLSFT 193 (541)
T ss_pred eEEEcCCCCEEEecc-------------------ceEEEEEccCceEEEEecCCCcceEEEEEE
Confidence 889999998877643 47888888888877777776655 334443
No 336
>smart00284 OLF Olfactomedin-like domains.
Probab=60.60 E-value=1.2e+02 Score=26.85 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=24.4
Q ss_pred CceEEEEeCCCCeEE--EeecCC----C------CcceEEEccCCCEEEEE
Q 017317 197 HGKLLKYDPSLNETS--ILLDSL----F------FANGVALSKDEDYLVVC 235 (373)
Q Consensus 197 ~g~l~~~d~~~~~~~--~~~~~~----~------~~~gi~~~~dg~~l~v~ 235 (373)
+..|.+||..++.+. ..+..- . ..+-|.|..|++.|||.
T Consensus 93 s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvI 143 (255)
T smart00284 93 SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVI 143 (255)
T ss_pred CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEE
Confidence 357999999887764 222211 1 12346777777779886
No 337
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.57 E-value=90 Score=33.29 Aligned_cols=135 Identities=17% Similarity=0.119 Sum_probs=66.6
Q ss_pred CCEEEEecCCeEEEEEcC-----CceEEe---eeecCccccCeEECCCCc-EEEEECC-CcEEEEe-cCCcEEEeeccCC
Q 017317 88 GVLYTATRDGWIKRLHKN-----GTWENW---KLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-EEGVTVLASHVNG 156 (373)
Q Consensus 88 G~l~v~~~~g~I~~~~~~-----g~~~~~---~~~~~~p~~gl~~d~~g~-L~va~~~-~gl~~~~-~~g~~~l~~~~~~ 156 (373)
|.|--|..+|.|..|+++ ++...+ ....+... ||-|.+.+. +...... +.|+.+| .+-.+..... .-
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~-gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~ 158 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVL-GLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQ 158 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCcee-eeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CC
Confidence 445456689999999843 222222 22345566 888887765 4443322 4477777 2111111110 00
Q ss_pred ccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE-EeecC--CCCcceEEEccCCCEE
Q 017317 157 SRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDS--LFFANGVALSKDEDYL 232 (373)
Q Consensus 157 ~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~~~--~~~~~gi~~~~dg~~l 232 (373)
.....+..|+....- +|+.+. ..+|+...+|.+.++.. .+... -...++++|+|+....
T Consensus 159 ~~~~eI~~lsWNrkvqhILAS~-----------------s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 159 APPSEIKCLSWNRKVSHILASG-----------------SPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred CCcccceEeccchhhhHHhhcc-----------------CCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence 011122233333221 333332 24567777776644221 12111 1235789999998766
Q ss_pred EEEeCCCCe
Q 017317 233 VVCETFKFR 241 (373)
Q Consensus 233 ~v~~~~~~~ 241 (373)
+++.+...+
T Consensus 222 l~~As~dd~ 230 (1049)
T KOG0307|consen 222 LLVASGDDS 230 (1049)
T ss_pred eeeecCCCC
Confidence 665555543
No 338
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=60.16 E-value=32 Score=19.95 Aligned_cols=20 Identities=5% Similarity=0.037 Sum_probs=15.0
Q ss_pred CCccEEEEEECCCCcEEEEEe
Q 017317 315 LHKKAAVVNVAANGIVIRKFE 335 (373)
Q Consensus 315 ~~~~g~v~~~~~~g~~~~~~~ 335 (373)
....|.|.+++++|.. ..++
T Consensus 13 ~~~~GTvf~~~~~g~~-t~L~ 32 (34)
T TIGR03803 13 ASGFGTLYRLSTAGGT-TVLH 32 (34)
T ss_pred CCCceeEEEEcCCCCe-EEEE
Confidence 5667889999998877 4443
No 339
>smart00284 OLF Olfactomedin-like domains.
Probab=59.87 E-value=1.3e+02 Score=26.77 Aligned_cols=150 Identities=15% Similarity=0.228 Sum_probs=74.2
Q ss_pred cCCcceEEEecCCCEEEEe-cCCeEEEEE-cCCceEEeeeec--------------CccccCeEECCCCcEEEE---ECC
Q 017317 76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIG--------------GDTLLGITTTQENEILVC---DAD 136 (373)
Q Consensus 76 ~~~P~~ia~d~~G~l~v~~-~~g~I~~~~-~~g~~~~~~~~~--------------~~p~~gl~~d~~g~L~va---~~~ 136 (373)
..|...++. +|.||.-. ....|+|++ ..+.+......+ ..-. .+++|++| |||. ...
T Consensus 74 ~~GtG~VVY--ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdi-DlAvDE~G-LWvIYat~~~ 149 (255)
T smart00284 74 GQGTGVVVY--NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDI-DLAVDENG-LWVIYATEQN 149 (255)
T ss_pred cccccEEEE--CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccE-EEEEcCCc-eEEEEeccCC
Confidence 456666666 48888633 346799999 444432221111 1124 66777654 6664 223
Q ss_pred Cc-EE--EEecCCcEEEeeccCCcccc-ccceeEEcCCCcEEEEeCCccccccccccccccccCCce-EEEEeCCCCeEE
Q 017317 137 KG-LL--KVTEEGVTVLASHVNGSRIN-LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGK-LLKYDPSLNETS 211 (373)
Q Consensus 137 ~g-l~--~~~~~g~~~l~~~~~~~~~~-~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~-l~~~d~~~~~~~ 211 (373)
.| |+ ++|+.-+++...-.-+.+.. .-+++.+ =|.||++++.. ....+ -+.||..+++.+
T Consensus 150 ~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmv--CGvLY~~~s~~--------------~~~~~I~yayDt~t~~~~ 213 (255)
T smart00284 150 AGKIVISKLNPATLTIENTWITTYNKRSASNAFMI--CGILYVTRSLG--------------SKGEKVFYAYDTNTGKEG 213 (255)
T ss_pred CCCEEEEeeCcccceEEEEEEcCCCcccccccEEE--eeEEEEEccCC--------------CCCcEEEEEEECCCCccc
Confidence 34 32 45532222221111111111 1122222 27899987531 11233 467888776543
Q ss_pred EeecCC----CCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 017317 212 ILLDSL----FFANGVALSKDEDYLVVCETFKFRCLKYWL 247 (373)
Q Consensus 212 ~~~~~~----~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~ 247 (373)
.+.-.+ ....-+...|..+.||+-+.+ .+..|++
T Consensus 214 ~~~i~f~n~y~~~s~l~YNP~d~~LY~wdng--~~l~Y~v 251 (255)
T smart00284 214 HLDIPFENMYEYISMLDYNPNDRKLYAWNNG--HLVHYDI 251 (255)
T ss_pred eeeeeeccccccceeceeCCCCCeEEEEeCC--eEEEEEE
Confidence 321112 222347777877789988653 4666654
No 340
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=59.03 E-value=1.9e+02 Score=28.67 Aligned_cols=105 Identities=14% Similarity=0.105 Sum_probs=63.5
Q ss_pred eEEEEEecCCCCcceeEEecCCCCC-CCceeECC-CCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCcc
Q 017317 241 RCLKYWLKGESKEQTEIFVENLPGG-PDNIKLAP-DGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKK 318 (373)
Q Consensus 241 ~i~~~~~~~~~~~~~~~~~~~~~g~-p~~i~~d~-dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 318 (373)
.|++|.+++.+..-... ...+|. .+-+++|. +|+|-|++..+... + .......
T Consensus 249 ~I~kf~~~~~~~~y~~s--g~V~G~llnqFsmdE~~G~LRvaTT~~~~~-~----------------------~~~~~s~ 303 (521)
T PF09826_consen 249 TIYKFALDGGKIEYVGS--GSVPGYLLNQFSMDEYDGYLRVATTSGNWW-W----------------------DSEDTSS 303 (521)
T ss_pred EEEEEEccCCcEEEEEE--EEECcEEcccccEeccCCEEEEEEecCccc-c----------------------cCCCCce
Confidence 46677766533221111 123443 34577886 77888888654210 0 0012334
Q ss_pred EEEEEECCCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCC-CeEEEeeCCC
Q 017317 319 AAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNT-NFIGKLPLKA 372 (373)
Q Consensus 319 g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~-~~i~~~~l~~ 372 (373)
..++.+|.+-+.+-.+.+-. .-..+.++.+-+++.|+-|++. |=+..++|.+
T Consensus 304 N~lyVLD~~L~~vG~l~~la--~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsd 356 (521)
T PF09826_consen 304 NNLYVLDEDLKIVGSLEGLA--PGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSD 356 (521)
T ss_pred EEEEEECCCCcEeEEccccC--CCceEEEEEEeCCeEEEEEEeecCceEEEECCC
Confidence 45788887777777775421 1235889999999999999987 7777777754
No 341
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.59 E-value=58 Score=31.90 Aligned_cols=64 Identities=17% Similarity=0.123 Sum_probs=40.6
Q ss_pred ceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEEEeCCCCe
Q 017317 163 DDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVCETFKFR 241 (373)
Q Consensus 163 ~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~~~~ 241 (373)
++++...+|.|.|+.- .|.|-.||.-..+....++++..| ..|..+.||++++.+.- .-
T Consensus 434 sc~aTT~sG~IvvgS~------------------~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~--ty 493 (644)
T KOG2395|consen 434 SCFATTESGYIVVGSL------------------KGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK--TY 493 (644)
T ss_pred ceeeecCCceEEEeec------------------CCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc--cE
Confidence 4566677788877753 367777876444444455665554 57888999996665542 33
Q ss_pred EEEEE
Q 017317 242 CLKYW 246 (373)
Q Consensus 242 i~~~~ 246 (373)
+..++
T Consensus 494 LlLi~ 498 (644)
T KOG2395|consen 494 LLLID 498 (644)
T ss_pred EEEEE
Confidence 55544
No 342
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=58.30 E-value=2.5e+02 Score=30.20 Aligned_cols=48 Identities=21% Similarity=0.144 Sum_probs=33.0
Q ss_pred CceEEEE----eCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEE
Q 017317 197 HGKLLKY----DPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKY 245 (373)
Q Consensus 197 ~g~l~~~----d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~ 245 (373)
+|.|+.+ ++++..++.+..--..-..++||||++.|.+++ +.+.+..+
T Consensus 96 ~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT-~~~~l~~m 147 (928)
T PF04762_consen 96 SGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVT-GEGNLLLM 147 (928)
T ss_pred CceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEe-CCCEEEEE
Confidence 3788888 777777777654444556789999999666664 45556544
No 343
>PF11763 DIPSY: Cell-wall adhesin ligand-binding C-terminal; InterPro: IPR021746 The DIPSY domain is characterised by the distinctive D*I*PSY motif at the very C terminus of yeast cell-wall glycoproteins. It appears not to be conserved in any other species, however. In fungi, cell adhesion is required for flocculation, mating and virulence, and is mediated by covalently bound cell wall proteins termed adhesins. Map4, an adhesin required for mating in Schizosaccharomyces pombe, is N-glycosylated and O-glycosylated, and is an endogenous substrate for the mannosyl transferase Oma4p. Map4 has a modular structure with an N-terminal signal peptide, a serine and threonine (S/T)-rich domain that includes nine repeats of 36 amino acids (rich in serine and threonine residues, but lacking glutamines), and a C-terminal DIPSY domain with no glycosyl-phosphatidyl inositol (GPI)-anchor signal. The N-terminal S/T-rich regions, are required for cell wall attachment, but the C-terminal DIPSY domain is required for agglutination and mating in liquid and solid media [].
Probab=57.72 E-value=82 Score=23.96 Aligned_cols=89 Identities=15% Similarity=0.222 Sum_probs=44.3
Q ss_pred CCcceEEEecCCCEEEEec--CCe--EEEEEcCCceEEeeee-cCccccCeEEC-CCCcEE-EEECCCcEEEEecCCcEE
Q 017317 77 NGPEDVCVDRNGVLYTATR--DGW--IKRLHKNGTWENWKLI-GGDTLLGITTT-QENEIL-VCDADKGLLKVTEEGVTV 149 (373)
Q Consensus 77 ~~P~~ia~d~~G~l~v~~~--~g~--I~~~~~~g~~~~~~~~-~~~p~~gl~~d-~~g~L~-va~~~~gl~~~~~~g~~~ 149 (373)
..|.-+..+++|..+.++. .++ |+.+|.+ .+.+... +.+|..-+..+ +.+.-| +-....|.+++.
T Consensus 4 isPSYvy~~sng~~~ass~g~~~g~nvFyYDst--i~RI~TCc~vrP~Y~v~~~D~~~~sf~I~kn~dG~~~Ft------ 75 (123)
T PF11763_consen 4 ISPSYVYLNSNGYMIASSNGDPEGENVFYYDST--IKRIVTCCCVRPIYRVYHDDPNKSSFNIIKNNDGTYQFT------ 75 (123)
T ss_pred cccceEEEcCCCcEEeeccCCcCceeeEEecCC--cceEEEecccccEEEEeecCCCcceEEEEecCCCcEEEE------
Confidence 4688899999999997762 233 3444432 2233222 23454122222 111111 111122332221
Q ss_pred EeeccCCccccccceeEEcCCCcEEEEe
Q 017317 150 LASHVNGSRINLADDLIAATDGSIYFSV 177 (373)
Q Consensus 150 l~~~~~~~~~~~~~~l~~~~dG~l~v~~ 177 (373)
+.. .....+..+.+..+|+||++.
T Consensus 76 ~~e----~~~~ep~~l~~l~dgri~~ts 99 (123)
T PF11763_consen 76 FVE----SSFSEPLDLHTLSDGRIWFTS 99 (123)
T ss_pred Ecc----cCCCCcEEEEEecCCcEEEEc
Confidence 111 123356688889999999986
No 344
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=57.55 E-value=2.7e+02 Score=29.93 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=37.6
Q ss_pred CCCEEEEecCCeEEEE----Ec-CCceEEeeeecCccccCeEECCCCcEEE-EECCCcEEEEe
Q 017317 87 NGVLYTATRDGWIKRL----HK-NGTWENWKLIGGDTLLGITTTQENEILV-CDADKGLLKVT 143 (373)
Q Consensus 87 ~G~l~v~~~~g~I~~~----~~-~g~~~~~~~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~ 143 (373)
...++++..+|.|+.+ +. +...+.+........ ++++.||+++.+ ++..+.++.++
T Consensus 87 ~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~-a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 87 SESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGIL-AASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEE-EEEECCCcCEEEEEeCCCEEEEEe
Confidence 4568888899999888 42 234555554455667 889999998654 45444566554
No 345
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=56.74 E-value=1.8e+02 Score=27.57 Aligned_cols=105 Identities=11% Similarity=0.026 Sum_probs=49.0
Q ss_pred ceeEEcCCCcEEEEeCCccccccccccccccccCC-ceEEEEeCCCC-----eEEEeecCCCCcceEEEccCCCEEEEEe
Q 017317 163 DDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH-GKLLKYDPSLN-----ETSILLDSLFFANGVALSKDEDYLVVCE 236 (373)
Q Consensus 163 ~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~-g~l~~~d~~~~-----~~~~~~~~~~~~~gi~~~~dg~~l~v~~ 236 (373)
.++..++||+..+-.... ... ..+|.++...+ ....+...........-.. ++.+|+..
T Consensus 230 ~~~~~s~d~~~l~i~~~~--------------~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~T 294 (414)
T PF02897_consen 230 VSVSRSKDGRYLFISSSS--------------GTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILT 294 (414)
T ss_dssp EEEEE-TTSSEEEEEEES--------------SSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE
T ss_pred EEEEecCcccEEEEEEEc--------------cccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEee
Confidence 467788888644432211 112 46888887754 4555544333222222222 45566644
Q ss_pred C---CCCeEEEEEecCCCCccee-EEecCCC-CCCCceeECCCCCEEEEEec
Q 017317 237 T---FKFRCLKYWLKGESKEQTE-IFVENLP-GGPDNIKLAPDGSFWIAILQ 283 (373)
Q Consensus 237 ~---~~~~i~~~~~~~~~~~~~~-~~~~~~~-g~p~~i~~d~dG~lwva~~~ 283 (373)
. .+++|+++++......... .+..... ....++... +++|.+....
T Consensus 295 n~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~Lvl~~~~ 345 (414)
T PF02897_consen 295 NDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-KDYLVLSYRE 345 (414)
T ss_dssp -TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-TTEEEEEEEE
T ss_pred CCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-CCEEEEEEEE
Confidence 3 2468888887765432322 3332221 123444443 3345555543
No 346
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=55.58 E-value=1.1e+02 Score=30.15 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=47.6
Q ss_pred ceEEEEeCCCCeEEEe--ecCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEecCCCCcceeEEecCCCCCCCceeECC
Q 017317 198 GKLLKYDPSLNETSIL--LDSLFFANGVALSKDEDYLVVCETF--KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP 273 (373)
Q Consensus 198 g~l~~~d~~~~~~~~~--~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~ 273 (373)
-+.|.+....++...+ .+. .+.|.+-++|.|+++.++... ++.+.-||.+-..... ......-....+.-|+
T Consensus 472 vsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~---~~~~eh~~at~veWDP 547 (698)
T KOG2314|consen 472 VSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKD---TASPEHFAATEVEWDP 547 (698)
T ss_pred eeEEEeecCCCchhhhhhhcc-cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhh---ccCccccccccceECC
Confidence 3566665443443332 122 567899999999988887754 4567777754211111 1101112345677799
Q ss_pred CCCEEEEEec
Q 017317 274 DGSFWIAILQ 283 (373)
Q Consensus 274 dG~lwva~~~ 283 (373)
.|++.+++..
T Consensus 548 tGRYvvT~ss 557 (698)
T KOG2314|consen 548 TGRYVVTSSS 557 (698)
T ss_pred CCCEEEEeee
Confidence 9988877654
No 347
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=53.77 E-value=1.7e+02 Score=26.52 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=46.1
Q ss_pred ceEEEec-CCCEE-EEecCCeEEEEE--cCCceEEe--eeecCccccCeEECCCC-cEEEEECCCcEEEEe-cCC-cEEE
Q 017317 80 EDVCVDR-NGVLY-TATRDGWIKRLH--KNGTWENW--KLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-EEG-VTVL 150 (373)
Q Consensus 80 ~~ia~d~-~G~l~-v~~~~g~I~~~~--~~g~~~~~--~~~~~~p~~gl~~d~~g-~L~va~~~~gl~~~~-~~g-~~~l 150 (373)
..|++.| ...+. .++++|.|..++ .+|..... ....+-++ .+++..|| ++|.+...+.+-.+| .++ ...+
T Consensus 31 S~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL-~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v 109 (347)
T KOG0647|consen 31 SALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVL-DVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQV 109 (347)
T ss_pred heeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeE-EEEEccCCceEEeeccCCceEEEEccCCCeeee
Confidence 4466666 55566 677999888777 34543221 12233445 88898888 477777666677778 777 6555
Q ss_pred eec
Q 017317 151 ASH 153 (373)
Q Consensus 151 ~~~ 153 (373)
..+
T Consensus 110 ~~H 112 (347)
T KOG0647|consen 110 AAH 112 (347)
T ss_pred eec
Confidence 443
No 348
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=53.41 E-value=58 Score=32.85 Aligned_cols=90 Identities=12% Similarity=0.071 Sum_probs=48.5
Q ss_pred CEEEEecCCeEEEEEcCCce-EEeee--ecCccccCeEECCCCcEEEEECCCcEEEEe--cCC---cEEEeeccCCcccc
Q 017317 89 VLYTATRDGWIKRLHKNGTW-ENWKL--IGGDTLLGITTTQENEILVCDADKGLLKVT--EEG---VTVLASHVNGSRIN 160 (373)
Q Consensus 89 ~l~v~~~~g~I~~~~~~g~~-~~~~~--~~~~p~~gl~~d~~g~L~va~~~~gl~~~~--~~g---~~~l~~~~~~~~~~ 160 (373)
.+-+|+..|.++.++..+.. ..+.+ ..+... .+.+..+..+.++....|.+.+. ..+ -..+.+..+-....
T Consensus 47 ~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~-~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~ 125 (726)
T KOG3621|consen 47 YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITC-VRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKC 125 (726)
T ss_pred eEEEecccceEEEEecCchhhhcccccCccceEE-EEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCc
Confidence 44467777777777644422 22111 112222 45566666676665556655554 222 22222222211234
Q ss_pred ccceeEEcCCC-cEEEEeCC
Q 017317 161 LADDLIAATDG-SIYFSVAS 179 (373)
Q Consensus 161 ~~~~l~~~~dG-~l~v~~~~ 179 (373)
.+.++..++|| ++|.+|..
T Consensus 126 rVTal~Ws~~~~k~ysGD~~ 145 (726)
T KOG3621|consen 126 RVTALEWSKNGMKLYSGDSQ 145 (726)
T ss_pred eEEEEEecccccEEeecCCC
Confidence 67889999999 79999865
No 349
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=52.67 E-value=1.7e+02 Score=28.26 Aligned_cols=139 Identities=17% Similarity=0.201 Sum_probs=67.9
Q ss_pred ceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCC---------------CCCceeECCCCCE--EEEEec
Q 017317 221 NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPG---------------GPDNIKLAPDGSF--WIAILQ 283 (373)
Q Consensus 221 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g---------------~p~~i~~d~dG~l--wva~~~ 283 (373)
.-+-++|||+.+|+.+. +.+..|+++.......+ ..+..++ .-.=+..++||-+ |.-...
T Consensus 224 ~qllL~Pdg~~LYv~~g--~~~~v~~L~~r~l~~rk-l~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~ 300 (733)
T COG4590 224 SQLLLTPDGKTLYVRTG--SELVVALLDKRSLQIRK-LVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRR 300 (733)
T ss_pred HhhEECCCCCEEEEecC--CeEEEEeecccccchhh-hhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeec
Confidence 45778999999999865 56777776544322211 1111111 1222445667642 554433
Q ss_pred CCCchhhhccCChHHHHH-HH-hcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCc-----eecceeEEEEeCCEEE
Q 017317 284 LSSPGLEFVHTSKATKHL-LA-AFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGK-----VMSFVTSALEFDDHLY 356 (373)
Q Consensus 284 ~~~~~~~~~~~~p~~~~~-~~-~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~-----~~~~~~~~~~~~g~L~ 356 (373)
+. .|++.++ .. ..|..+..+.+...+-+.+.++++|+....++..... ....+.-+..+...-|
T Consensus 301 ~~---------~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~ 371 (733)
T COG4590 301 DG---------QPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAY 371 (733)
T ss_pred CC---------CCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccch
Confidence 21 2332221 11 1222222222333344567788888875544332211 1122334444444444
Q ss_pred EeeCCCCeEEEeeCC
Q 017317 357 LGSLNTNFIGKLPLK 371 (373)
Q Consensus 357 vgs~~~~~i~~~~l~ 371 (373)
+-..++..|.++.++
T Consensus 372 Ll~e~~gki~~~~l~ 386 (733)
T COG4590 372 LLSEDQGKIRLAQLE 386 (733)
T ss_pred heeecCCceEEEEec
Confidence 555566667777765
No 350
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=52.36 E-value=2.1e+02 Score=27.04 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=34.6
Q ss_pred CceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 017317 197 HGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK 248 (373)
Q Consensus 197 ~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 248 (373)
...|..+|-.+++...-.+.......+.|..||. ++++...+.+|..+|..
T Consensus 153 Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr 203 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPR 203 (472)
T ss_pred CceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccceeEEEcCC
Confidence 3567777777776444333222335788999998 77777777888888854
No 351
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.44 E-value=2.2e+02 Score=27.03 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=13.4
Q ss_pred cceEEEccCCCEEEEEe
Q 017317 220 ANGVALSKDEDYLVVCE 236 (373)
Q Consensus 220 ~~gi~~~~dg~~l~v~~ 236 (373)
-.|+++++|++.||-.-
T Consensus 202 fEglait~d~~~L~~~l 218 (391)
T COG4222 202 FEGLAITPDGKKLYALL 218 (391)
T ss_pred eeeEEecCCCceEEEEE
Confidence 35799999999888653
No 352
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=51.39 E-value=45 Score=19.01 Aligned_cols=28 Identities=18% Similarity=0.052 Sum_probs=18.8
Q ss_pred CCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 017317 218 FFANGVALSKDEDYLVVCETFKFRCLKYW 246 (373)
Q Consensus 218 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~ 246 (373)
...+.++++|+++.+..+ ..++.|..|+
T Consensus 12 ~~i~~i~~~~~~~~~~s~-~~D~~i~vwd 39 (39)
T PF00400_consen 12 SSINSIAWSPDGNFLASG-SSDGTIRVWD 39 (39)
T ss_dssp SSEEEEEEETTSSEEEEE-ETTSEEEEEE
T ss_pred CcEEEEEEecccccceee-CCCCEEEEEC
Confidence 456789999998844444 4566666654
No 353
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=50.84 E-value=44 Score=21.77 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=27.9
Q ss_pred ceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEE
Q 017317 268 NIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKF 334 (373)
Q Consensus 268 ~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~ 334 (373)
.+++.+||+|.++-..... .......+.+++++|..-..|
T Consensus 5 ~~~~q~DGkIlv~G~~~~~---------------------------~~~~~~~l~Rln~DGsLDttF 44 (55)
T TIGR02608 5 AVAVQSDGKILVAGYVDNS---------------------------SGNNDFVLARLNADGSLDTTF 44 (55)
T ss_pred EEEECCCCcEEEEEEeecC---------------------------CCcccEEEEEECCCCCccCCc
Confidence 5778899999988654210 023345689999999887666
No 354
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=49.63 E-value=2.1e+02 Score=26.31 Aligned_cols=206 Identities=13% Similarity=0.176 Sum_probs=0.0
Q ss_pred EEec-CCCEE--EEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCC--cEEEEECCCcEEEEe-cCC-cEEEeecc
Q 017317 83 CVDR-NGVLY--TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQEN--EILVCDADKGLLKVT-EEG-VTVLASHV 154 (373)
Q Consensus 83 a~d~-~G~l~--v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g--~L~va~~~~gl~~~~-~~g-~~~l~~~~ 154 (373)
++|. +|+.| ++..-|-|..+| ..++........|.....|.+.|+. -+.-+..++.+..++ +++ .-.+....
T Consensus 98 ~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 98 SYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred EecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc
Q ss_pred CCccccccceeEEcCCCcEEEEeCCccccccccccc--------------------------------------------
Q 017317 155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLD-------------------------------------------- 190 (373)
Q Consensus 155 ~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~-------------------------------------------- 190 (373)
.|... .+-.+.++.+|. ++...+....+..|...
T Consensus 178 egHrd-eVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 178 EGHRD-EVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccC-cEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Q ss_pred --------cccccCCceEEEEeC-----------CCCeEEEeecCCCCcce------EEEccCCCEEEEEeCCCCeEEEE
Q 017317 191 --------LLEAKPHGKLLKYDP-----------SLNETSILLDSLFFANG------VALSKDEDYLVVCETFKFRCLKY 245 (373)
Q Consensus 191 --------~~~~~~~g~l~~~d~-----------~~~~~~~~~~~~~~~~g------i~~~~dg~~l~v~~~~~~~i~~~ 245 (373)
+++....+.|..+-| .....+.++..+..|++ .++++-++ +++.....+.++.+
T Consensus 256 Cvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 256 CVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVW 334 (385)
T ss_pred HHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEE
Q ss_pred EecCCCCcceeEEecCCCC-CCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEE
Q 017317 246 WLKGESKEQTEIFVENLPG-GPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNV 324 (373)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~g-~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~ 324 (373)
+++...............+ ...-.++..||.+.+....- +.|.++
T Consensus 335 dL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd----------------------------------~~Vwrw 380 (385)
T KOG1034|consen 335 DLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDD----------------------------------GTVWRW 380 (385)
T ss_pred ECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCC----------------------------------CcEEEE
Q ss_pred C
Q 017317 325 A 325 (373)
Q Consensus 325 ~ 325 (373)
|
T Consensus 381 d 381 (385)
T KOG1034|consen 381 D 381 (385)
T ss_pred E
No 355
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=48.91 E-value=1.4e+02 Score=33.82 Aligned_cols=30 Identities=30% Similarity=0.241 Sum_probs=19.8
Q ss_pred cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 017317 215 DSLFFANGVALSKDEDYLVVCETFKFRCLKYWL 247 (373)
Q Consensus 215 ~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~ 247 (373)
++......|.++.| .|||+++ .+++|.-++
T Consensus 486 dG~a~A~~VgLs~d--rLFvADs-eGkLYsa~l 515 (1774)
T PF11725_consen 486 DGKAQAQSVGLSND--RLFVADS-EGKLYSADL 515 (1774)
T ss_pred CCchhhhheeecCC--eEEEEeC-CCCEEeccc
Confidence 34445566778776 4999986 456776554
No 356
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=48.89 E-value=3e+02 Score=27.79 Aligned_cols=23 Identities=4% Similarity=0.098 Sum_probs=17.6
Q ss_pred CeEECCCC-cEEEEECCCcEEEEe
Q 017317 121 GITTTQEN-EILVCDADKGLLKVT 143 (373)
Q Consensus 121 gl~~d~~g-~L~va~~~~gl~~~~ 143 (373)
.|..|..| .||+.-.++.||.|+
T Consensus 276 nL~lDssGt~L~AsCtD~sIy~yn 299 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCTDNSIYFYN 299 (720)
T ss_pred EEEecCCCCeEEEEecCCcEEEEe
Confidence 67788888 577754567899998
No 357
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=48.31 E-value=3.7e+02 Score=28.69 Aligned_cols=102 Identities=18% Similarity=0.147 Sum_probs=66.1
Q ss_pred ceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE-eecCCCCcceEEEccCCCEEEEEeCCCC
Q 017317 163 DDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFANGVALSKDEDYLVVCETFKF 240 (373)
Q Consensus 163 ~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~~gi~~~~dg~~l~v~~~~~~ 240 (373)
..+.++. ++.+|.++.+ ...+++.......... ...+...+.+++.+--++.+|+++....
T Consensus 440 ~~~d~d~~~~~i~~~d~~-----------------~~~i~~~~~~~~~~~~~~~~g~~~~~~lavD~~~~~~y~tDe~~~ 502 (877)
T KOG1215|consen 440 VALDFDVLNNRIYWADLS-----------------DEKICRASQDGSSECELCGDGLCIPEGLAVDWIGDNIYWTDEGNC 502 (877)
T ss_pred eEEEEEecCCEEEEEecc-----------------CCeEeeeccCCCccceEeccCccccCcEEEEeccCCceecccCCc
Confidence 3444442 3467777754 2456666554333333 4566788999999988888999999999
Q ss_pred eEEEEEecCCCCcceeEEecCCCCCCCceeECC-CCCEEEEEecC
Q 017317 241 RCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP-DGSFWIAILQL 284 (373)
Q Consensus 241 ~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-dG~lwva~~~~ 284 (373)
.+.+-.+++.. . ...+...+ ..|..+++++ .|.++...++.
T Consensus 503 ~i~v~~~~g~~-~-~vl~~~~l-~~~r~~~v~p~~g~~~wtd~~~ 544 (877)
T KOG1215|consen 503 LIEVADLDGSS-R-KVLVSKDL-DLPRSIAVDPEKGLMFWTDWGQ 544 (877)
T ss_pred eeEEEEccCCc-e-eEEEecCC-CCccceeeccccCeeEEecCCC
Confidence 88888866643 2 22222233 6788899998 45566666653
No 358
>PF11763 DIPSY: Cell-wall adhesin ligand-binding C-terminal; InterPro: IPR021746 The DIPSY domain is characterised by the distinctive D*I*PSY motif at the very C terminus of yeast cell-wall glycoproteins. It appears not to be conserved in any other species, however. In fungi, cell adhesion is required for flocculation, mating and virulence, and is mediated by covalently bound cell wall proteins termed adhesins. Map4, an adhesin required for mating in Schizosaccharomyces pombe, is N-glycosylated and O-glycosylated, and is an endogenous substrate for the mannosyl transferase Oma4p. Map4 has a modular structure with an N-terminal signal peptide, a serine and threonine (S/T)-rich domain that includes nine repeats of 36 amino acids (rich in serine and threonine residues, but lacking glutamines), and a C-terminal DIPSY domain with no glycosyl-phosphatidyl inositol (GPI)-anchor signal. The N-terminal S/T-rich regions, are required for cell wall attachment, but the C-terminal DIPSY domain is required for agglutination and mating in liquid and solid media [].
Probab=47.97 E-value=1.2e+02 Score=23.06 Aligned_cols=20 Identities=20% Similarity=0.526 Sum_probs=15.7
Q ss_pred CCCCceeECCCCCEEEEEec
Q 017317 264 GGPDNIKLAPDGSFWIAILQ 283 (373)
Q Consensus 264 g~p~~i~~d~dG~lwva~~~ 283 (373)
+.|-.+.++.+|++|+.+..
T Consensus 82 ~ep~~l~~l~dgri~~ts~~ 101 (123)
T PF11763_consen 82 SEPLDLHTLSDGRIWFTSNE 101 (123)
T ss_pred CCcEEEEEecCCcEEEEccc
Confidence 34666788899999999853
No 359
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=47.80 E-value=1.4e+02 Score=30.49 Aligned_cols=93 Identities=17% Similarity=0.129 Sum_probs=50.1
Q ss_pred CcceEEEecCCCEE-EEecCCeEEEEE-cCCc-eEEeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe--cCC-cEEE
Q 017317 78 GPEDVCVDRNGVLY-TATRDGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT--EEG-VTVL 150 (373)
Q Consensus 78 ~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~-~~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~--~~g-~~~l 150 (373)
.-+++.++..-.|. .|..+|.|..+| ..++ ++.+......+. .+.|.|-|..... .....+-.+| ..| ...+
T Consensus 72 pIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~-sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~ 150 (825)
T KOG0267|consen 72 PIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNIT-SVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY 150 (825)
T ss_pred cceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcc-eeeeccceEEeccccccccceehhhhccCceeee
Confidence 35778888866666 566778888888 3333 222222223345 6777777665521 1112244444 245 3333
Q ss_pred eeccCCccccccceeEEcCCCcEEEE
Q 017317 151 ASHVNGSRINLADDLIAATDGSIYFS 176 (373)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~dG~l~v~ 176 (373)
.. ....++-+.+.|+|+....
T Consensus 151 ~s-----~~~vv~~l~lsP~Gr~v~~ 171 (825)
T KOG0267|consen 151 KS-----HTRVVDVLRLSPDGRWVAS 171 (825)
T ss_pred cC-----CcceeEEEeecCCCceeec
Confidence 21 1224566788899875443
No 360
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=47.58 E-value=65 Score=28.54 Aligned_cols=54 Identities=17% Similarity=0.095 Sum_probs=34.4
Q ss_pred CCEEEEecCCeEEEEEcCCc-eEEeeeecCccccCeE----EC-CCCcEEEEECCCcEEEE
Q 017317 88 GVLYTATRDGWIKRLHKNGT-WENWKLIGGDTLLGIT----TT-QENEILVCDADKGLLKV 142 (373)
Q Consensus 88 G~l~v~~~~g~I~~~~~~g~-~~~~~~~~~~p~~gl~----~d-~~g~L~va~~~~gl~~~ 142 (373)
..|.+|+++|.|+.+|+.+- .......++.|. .|. +| .|.+++|+..++.|+.+
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 46789999999999986552 222223345554 332 34 67788888877666654
No 361
>PF13964 Kelch_6: Kelch motif
Probab=47.55 E-value=48 Score=20.56 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=23.6
Q ss_pred CCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe
Q 017317 169 TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL 213 (373)
Q Consensus 169 ~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~ 213 (373)
-+++||+..+.... ......+++||+.+++.+.+
T Consensus 10 ~~~~iyv~GG~~~~-----------~~~~~~v~~yd~~t~~W~~~ 43 (50)
T PF13964_consen 10 VGGKIYVFGGYDNS-----------GKYSNDVERYDPETNTWEQL 43 (50)
T ss_pred ECCEEEEECCCCCC-----------CCccccEEEEcCCCCcEEEC
Confidence 46799988654210 22346899999999888775
No 362
>PLN02153 epithiospecifier protein
Probab=47.40 E-value=2.3e+02 Score=26.07 Aligned_cols=122 Identities=15% Similarity=0.153 Sum_probs=55.7
Q ss_pred CCCEEE-Eec-------CCeEEEEEc-CCceEEeeeecCccc---cCeE-ECCCCcEEEEECC------CcEEEEe-cCC
Q 017317 87 NGVLYT-ATR-------DGWIKRLHK-NGTWENWKLIGGDTL---LGIT-TTQENEILVCDAD------KGLLKVT-EEG 146 (373)
Q Consensus 87 ~G~l~v-~~~-------~g~I~~~~~-~g~~~~~~~~~~~p~---~gl~-~d~~g~L~va~~~------~gl~~~~-~~g 146 (373)
++.||+ |.. ...++++|. ..+++........|. .+.+ ..-++.||+.-.. ..++++| .+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC
Confidence 578885 332 135778883 344554332111111 0221 1125678875321 2467788 455
Q ss_pred -cEEEeec-cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee
Q 017317 147 -VTVLASH-VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214 (373)
Q Consensus 147 -~~~l~~~-~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~ 214 (373)
.+.+... ....+......-+..-++.|||-.+....+... .......++.||+++.+.+.+.
T Consensus 112 ~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~------~~~~~~~v~~yd~~~~~W~~l~ 175 (341)
T PLN02153 112 EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMK------TPERFRTIEAYNIADGKWVQLP 175 (341)
T ss_pred EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccC------CCcccceEEEEECCCCeEeeCC
Confidence 5544321 011111111222233467899875431110000 0001236889999988877654
No 363
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.55 E-value=48 Score=32.41 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=44.1
Q ss_pred cceEEEecCCCEEEEecCCeEEEEEcCCce-EEeeeecCccccCeEECCCCcEEEEECCCcEEEEe
Q 017317 79 PEDVCVDRNGVLYTATRDGWIKRLHKNGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT 143 (373)
Q Consensus 79 P~~ia~d~~G~l~v~~~~g~I~~~~~~g~~-~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~ 143 (373)
=.|++...+|.|.+|+.+|.|..++.-|.. ++.....|.+..++-...+|+-.+|+-..-|+.++
T Consensus 433 Fsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~ 498 (644)
T KOG2395|consen 433 FSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLID 498 (644)
T ss_pred cceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEE
Confidence 456777778999999999999888865532 22222345554477777889888887665566655
No 364
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=46.09 E-value=2.4e+02 Score=25.84 Aligned_cols=160 Identities=12% Similarity=0.063 Sum_probs=74.1
Q ss_pred CeEEEEEcCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC---cEEEeeccCCccccccceeEE-cCC-
Q 017317 97 GWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG---VTVLASHVNGSRINLADDLIA-ATD- 170 (373)
Q Consensus 97 g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g---~~~l~~~~~~~~~~~~~~l~~-~~d- 170 (373)
+.++.||.-.+..........+..++.++++ +|.|... +.|+.|. ++. ...+-+. ..|+++.. .+.
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~-riVvvl~-~~I~VytF~~n~k~l~~~et~------~NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRD-RIVVVLE-NKIYVYTFPDNPKLLHVIETR------SNPKGLCSLCPTS 146 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcCC-eEEEEec-CeEEEEEcCCChhheeeeecc------cCCCceEeecCCC
Confidence 4677777322222222223334337888653 5666553 5688877 544 2222111 12334332 221
Q ss_pred CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE---EEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 017317 171 GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET---SILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWL 247 (373)
Q Consensus 171 G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~---~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~ 247 (373)
..-+++-.+ ...|.|...|....+. ..+......-.-+++..+|. ++.+.+..+.+.|+.-
T Consensus 147 ~k~~LafPg---------------~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFd 210 (346)
T KOG2111|consen 147 NKSLLAFPG---------------FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFD 210 (346)
T ss_pred CceEEEcCC---------------CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEE
Confidence 222333222 2346666666432222 11111122234578889997 7777777788887652
Q ss_pred cCCCCcceeEEe-cCCCCCCCceeECCCCCEEEEE
Q 017317 248 KGESKEQTEIFV-ENLPGGPDNIKLAPDGSFWIAI 281 (373)
Q Consensus 248 ~~~~~~~~~~~~-~~~~g~p~~i~~d~dG~lwva~ 281 (373)
.... +....+. .........++++++..+..+.
T Consensus 211 t~~g-~~l~E~RRG~d~A~iy~iaFSp~~s~Lavs 244 (346)
T KOG2111|consen 211 TEDG-TLLQELRRGVDRADIYCIAFSPNSSWLAVS 244 (346)
T ss_pred cCCC-cEeeeeecCCchheEEEEEeCCCccEEEEE
Confidence 2111 1111111 1122334457777776544443
No 365
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=45.28 E-value=88 Score=30.67 Aligned_cols=69 Identities=17% Similarity=0.080 Sum_probs=34.7
Q ss_pred ccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-ecCCCCcceEEEccCCCEEEEEeCCC
Q 017317 161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKDEDYLVVCETFK 239 (373)
Q Consensus 161 ~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~~gi~~~~dg~~l~v~~~~~ 239 (373)
.++.+++.+||....+.+. .|-|-.+|-++.+..-+ ..-+..---++|+|||++ +++...+
T Consensus 292 ~in~f~FS~DG~~LA~VSq-----------------DGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKy-IvtGGED 353 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQ-----------------DGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKY-IVTGGED 353 (636)
T ss_pred cccceeEcCCCceEEEEec-----------------CceEEEeeccHHHHHHHHHhhccceEEEEEcCCccE-EEecCCc
Confidence 5778888888876655443 23333333322221111 111122235789999984 4443344
Q ss_pred CeEEEEEe
Q 017317 240 FRCLKYWL 247 (373)
Q Consensus 240 ~~i~~~~~ 247 (373)
.-|.+|-+
T Consensus 354 DLVtVwSf 361 (636)
T KOG2394|consen 354 DLVTVWSF 361 (636)
T ss_pred ceEEEEEe
Confidence 44444443
No 366
>PLN02193 nitrile-specifier protein
Probab=44.45 E-value=3.1e+02 Score=26.72 Aligned_cols=113 Identities=12% Similarity=0.151 Sum_probs=56.1
Q ss_pred CCCEEE-Eec-----CCeEEEEE-cCCceEEeeeec----CccccCeEECCCCcEEEEECC------CcEEEEe-cCC-c
Q 017317 87 NGVLYT-ATR-----DGWIKRLH-KNGTWENWKLIG----GDTLLGITTTQENEILVCDAD------KGLLKVT-EEG-V 147 (373)
Q Consensus 87 ~G~l~v-~~~-----~g~I~~~~-~~g~~~~~~~~~----~~p~~gl~~d~~g~L~va~~~------~gl~~~~-~~g-~ 147 (373)
++.||+ |-. ...++++| .+.+++.+.... .+...+++. -+++|||.... ..+..+| .+. .
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 678885 332 24678888 445565543321 111103333 35688886322 1256676 444 4
Q ss_pred EEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee
Q 017317 148 TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214 (373)
Q Consensus 148 ~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~ 214 (373)
+.+.........+.-..+++ -+|.||+.-... +.....+++||+++.+.+.+.
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~-------------g~~~~dv~~yD~~t~~W~~~~ 359 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFN-------------GCEVDDVHYYDPVQDKWTQVE 359 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCC-------------CCccCceEEEECCCCEEEEec
Confidence 44322100001111112222 367888764320 011246999999988887764
No 367
>PLN02193 nitrile-specifier protein
Probab=44.33 E-value=3.1e+02 Score=26.71 Aligned_cols=68 Identities=13% Similarity=0.119 Sum_probs=35.9
Q ss_pred CCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC--CCcc-eEEEccCCCEEEEEeCCC-----C
Q 017317 169 TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--FFAN-GVALSKDEDYLVVCETFK-----F 240 (373)
Q Consensus 169 ~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~--~~~~-gi~~~~dg~~l~v~~~~~-----~ 240 (373)
-++.||+..... .......+++||+.+.+.+.+.... ..|. +.+....++.+|+....+ +
T Consensus 227 ~~~~lYvfGG~~------------~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~ 294 (470)
T PLN02193 227 IGSTLYVFGGRD------------ASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLK 294 (470)
T ss_pred ECCEEEEECCCC------------CCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcc
Confidence 367899875421 0012346999999988887654321 1111 112222334588764322 3
Q ss_pred eEEEEEec
Q 017317 241 RCLKYWLK 248 (373)
Q Consensus 241 ~i~~~~~~ 248 (373)
.+.+|+..
T Consensus 295 ~~~~yd~~ 302 (470)
T PLN02193 295 TLDSYNIV 302 (470)
T ss_pred eEEEEECC
Confidence 46677754
No 368
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=44.10 E-value=2.8e+02 Score=26.14 Aligned_cols=114 Identities=11% Similarity=-0.019 Sum_probs=59.1
Q ss_pred CccccCeEECCCCcEEEEECC-CcEEEEe-cCC-cEEEee--ccCCccc-cccceeEEcCCCcEEEEeCCcccccccccc
Q 017317 116 GDTLLGITTTQENEILVCDAD-KGLLKVT-EEG-VTVLAS--HVNGSRI-NLADDLIAATDGSIYFSVASTKFGLHNWGL 189 (373)
Q Consensus 116 ~~p~~gl~~d~~g~L~va~~~-~gl~~~~-~~g-~~~l~~--~~~~~~~-~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~ 189 (373)
+..+ .|-|..+|+..+.... .....++ ..- ...... ...+.+. ..+..|+++...+..++..
T Consensus 57 GCiN-AlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~----------- 124 (609)
T KOG4227|consen 57 GCIN-ALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE----------- 124 (609)
T ss_pred cccc-eeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC-----------
Confidence 4556 7888777665554221 2233333 221 111100 1122222 3466788987776655532
Q ss_pred ccccccCCceEEEEeCCCCeEEEeecCCC---CcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 017317 190 DLLEAKPHGKLLKYDPSLNETSILLDSLF---FANGVALSKDEDYLVVCETFKFRCLKYWLK 248 (373)
Q Consensus 190 ~~~~~~~~g~l~~~d~~~~~~~~~~~~~~---~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 248 (373)
..+.|++.|..+++...++.... ...++..+|-.+.+. +.+...++..++..
T Consensus 125 ------~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~-~~t~~~~V~~~D~R 179 (609)
T KOG4227|consen 125 ------RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLI-VVTRAKLVSFIDNR 179 (609)
T ss_pred ------CcceeEeeecccceeeeeecccCcccceeecccCCCCceEE-EEecCceEEEEecc
Confidence 24678888887776554432211 234677778766444 44445566666643
No 369
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=42.53 E-value=4.8e+02 Score=28.38 Aligned_cols=57 Identities=12% Similarity=0.128 Sum_probs=33.5
Q ss_pred CceEEEEeCCCCeEEEeecC------CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcce
Q 017317 197 HGKLLKYDPSLNETSILLDS------LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQT 255 (373)
Q Consensus 197 ~g~l~~~d~~~~~~~~~~~~------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~ 255 (373)
+|.|..+|......+.+.+. ...-..+.++++.. ++.+.+. ..|..|+..|+....+
T Consensus 1278 ~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~ 1340 (1387)
T KOG1517|consen 1278 DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNII 1340 (1387)
T ss_pred CCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhccc
Confidence 57888888765322222111 11134567777776 6666554 6788888888765443
No 370
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=42.21 E-value=3.2e+02 Score=26.20 Aligned_cols=171 Identities=13% Similarity=0.060 Sum_probs=86.2
Q ss_pred CCEEEEecCCeEEEEE-cCCceEEeee-ecCccccCeEECCCCc--EEEEECCCcEEEEe-cC----CcEEEeeccCCcc
Q 017317 88 GVLYTATRDGWIKRLH-KNGTWENWKL-IGGDTLLGITTTQENE--ILVCDADKGLLKVT-EE----GVTVLASHVNGSR 158 (373)
Q Consensus 88 G~l~v~~~~g~I~~~~-~~g~~~~~~~-~~~~p~~gl~~d~~g~--L~va~~~~gl~~~~-~~----g~~~l~~~~~~~~ 158 (373)
+.|..|+.+..|..+| ..|+...... ..+... .+.+.+..- |.-+.+.+.+..+| ++ +...-+.
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq-~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~------ 329 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQ-TLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD------ 329 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCcee-EEEecCCCceEEEeccccceEEeeeccCccccCceEEec------
Confidence 3445677888999999 5666544333 344455 788876543 33334434455455 31 1111111
Q ss_pred ccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCC-eE-EEeecCCCCcceEEEccCCCEEEEE
Q 017317 159 INLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ET-SILLDSLFFANGVALSKDEDYLVVC 235 (373)
Q Consensus 159 ~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~-~~~~~~~~~~~gi~~~~dg~~l~v~ 235 (373)
..+..+++++... .++... ..|.|+.+|.... +. ..+.-.-..-.|+.+...-..+.++
T Consensus 330 -g~VEkv~w~~~se~~f~~~t-----------------ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t 391 (463)
T KOG0270|consen 330 -GEVEKVAWDPHSENSFFVST-----------------DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLST 391 (463)
T ss_pred -cceEEEEecCCCceeEEEec-----------------CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceee
Confidence 1244566666542 222221 2478888886533 11 1111112245788888877778888
Q ss_pred eCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317 236 ETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL 284 (373)
Q Consensus 236 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~ 284 (373)
.+....+..+++.+...+..... ...-++-..++.+++--.+++..+.
T Consensus 392 ~s~d~~Vklw~~~~~~~~~v~~~-~~~~~rl~c~~~~~~~a~~la~GG~ 439 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDVDSPKSVKEH-SFKLGRLHCFALDPDVAFTLAFGGE 439 (463)
T ss_pred ccccceEEEEeecCCCCcccccc-cccccceeecccCCCcceEEEecCc
Confidence 66555555555543322111100 0112334456667766666665543
No 371
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=41.77 E-value=3.6e+02 Score=26.71 Aligned_cols=27 Identities=11% Similarity=0.014 Sum_probs=16.0
Q ss_pred ceEEEccCCCEEEEEeCCCCeEEEEEe
Q 017317 221 NGVALSKDEDYLVVCETFKFRCLKYWL 247 (373)
Q Consensus 221 ~gi~~~~dg~~l~v~~~~~~~i~~~~~ 247 (373)
..++|++||..+-+....+.-++.|-+
T Consensus 260 fnlsWS~DGTQ~a~gt~~G~v~~A~~i 286 (737)
T KOG1524|consen 260 FNLSWSADGTQATCGTSTGQLIVAYAI 286 (737)
T ss_pred EEEEEcCCCceeeccccCceEEEeeee
Confidence 357889999865555544444444433
No 372
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=41.45 E-value=3.2e+02 Score=28.22 Aligned_cols=95 Identities=13% Similarity=0.169 Sum_probs=54.5
Q ss_pred CCceEEEEeCCCC----eEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeE
Q 017317 196 PHGKLLKYDPSLN----ETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKL 271 (373)
Q Consensus 196 ~~g~l~~~d~~~~----~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~ 271 (373)
.+|.|..+|.... ....+-..-+..+-+.|++-.-.++++.+.++.|..||+...+... .+..+ ....+.+.+
T Consensus 108 ~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~--t~~~n-SESiRDV~f 184 (839)
T KOG0269|consen 108 TNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS--TFRSN-SESIRDVKF 184 (839)
T ss_pred CCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc--ccccc-chhhhceee
Confidence 4677888886521 1111222234567888888887899998888889899986543221 12211 122444555
Q ss_pred CC-CCCEEEEEecCCC-chhhhcc
Q 017317 272 AP-DGSFWIAILQLSS-PGLEFVH 293 (373)
Q Consensus 272 d~-dG~lwva~~~~~~-~~~~~~~ 293 (373)
.+ .++.+++...+.. ..||+-.
T Consensus 185 sp~~~~~F~s~~dsG~lqlWDlRq 208 (839)
T KOG0269|consen 185 SPGYGNKFASIHDSGYLQLWDLRQ 208 (839)
T ss_pred ccCCCceEEEecCCceEEEeeccC
Confidence 43 5678888776432 3444433
No 373
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=41.05 E-value=3.1e+02 Score=25.76 Aligned_cols=104 Identities=16% Similarity=0.176 Sum_probs=60.6
Q ss_pred cCCcCCcceEEEecCCCEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECC-CcEEEEe-cCC-cE
Q 017317 73 EGILNGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG-VT 148 (373)
Q Consensus 73 ~g~~~~P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~-~gl~~~~-~~g-~~ 148 (373)
+|-...-+++...+.+.+|.++.+-.|.++| ..|+...-. .++.+...+...+.-+|.++... ..+..+| +.+ -.
T Consensus 257 ~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~-~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs 335 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTL-TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS 335 (423)
T ss_pred cccccceeeEEEcCCCceEeecccceEEEEEeecccceeee-ecCcceeEeecccccceeeecCCCCceeecCCCCCCCc
Confidence 3444445667888889999999999999999 444332211 22333326667777788876443 3455556 344 33
Q ss_pred EEeeccCCccccccceeEEcCCC-cEEEEeC
Q 017317 149 VLASHVNGSRINLADDLIAATDG-SIYFSVA 178 (373)
Q Consensus 149 ~l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~ 178 (373)
++.....|.. +.+.++...|.. .++++.+
T Consensus 336 ~v~~s~~gH~-nwVssvkwsp~~~~~~~S~S 365 (423)
T KOG0313|consen 336 VVSQSLIGHK-NWVSSVKWSPTNEFQLVSGS 365 (423)
T ss_pred eeEEeeecch-hhhhheecCCCCceEEEEEe
Confidence 3222233322 366777777765 4555543
No 374
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=40.67 E-value=2.6e+02 Score=28.06 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=49.0
Q ss_pred ecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEE
Q 017317 214 LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI 281 (373)
Q Consensus 214 ~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~ 281 (373)
..++-.|.-|||++....+-|+...-+.|..|-+..-.....+...-.....|-|+++=.|..+.+-.
T Consensus 335 IPGILvPDliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilV 402 (671)
T PF15390_consen 335 IPGILVPDLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILV 402 (671)
T ss_pred cccccccceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEe
Confidence 45667789999999999888988888889999876544444433322334589999997777655544
No 375
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=39.75 E-value=2.8e+02 Score=25.62 Aligned_cols=76 Identities=14% Similarity=0.183 Sum_probs=44.7
Q ss_pred ceEEEEeCCCCeEE-EeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC
Q 017317 198 GKLLKYDPSLNETS-ILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS 276 (373)
Q Consensus 198 g~l~~~d~~~~~~~-~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~ 276 (373)
+.|...+...-+.. .+..+...-..+.++|||++++.+....-||.++-+...+. .+.........++++.+||+
T Consensus 71 ~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~----~~~~~pK~~~kg~~f~~dg~ 146 (447)
T KOG4497|consen 71 PKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG----YLLPHPKTNVKGYAFHPDGQ 146 (447)
T ss_pred ceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee----EEecccccCceeEEECCCCc
Confidence 34444444322222 12333344456889999999998888888888887654321 12211111236799999997
Q ss_pred E
Q 017317 277 F 277 (373)
Q Consensus 277 l 277 (373)
+
T Consensus 147 f 147 (447)
T KOG4497|consen 147 F 147 (447)
T ss_pred e
Confidence 5
No 376
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=38.91 E-value=1.7e+02 Score=28.27 Aligned_cols=18 Identities=6% Similarity=0.108 Sum_probs=15.2
Q ss_pred ccceeEEcCCCcEEEEeC
Q 017317 161 LADDLIAATDGSIYFSVA 178 (373)
Q Consensus 161 ~~~~l~~~~dG~l~v~~~ 178 (373)
.+.+|+++++|+..++++
T Consensus 295 ~V~siAv~~~G~YMaTtG 312 (545)
T KOG1272|consen 295 PVSSIAVDRGGRYMATTG 312 (545)
T ss_pred CcceEEECCCCcEEeecc
Confidence 467999999999888865
No 377
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=38.89 E-value=2.8e+02 Score=24.53 Aligned_cols=66 Identities=14% Similarity=0.124 Sum_probs=43.5
Q ss_pred ceEEEec-CCCEEEEecCCeEEEEE-cCCceEEeee-ecCccccCeEE-CCCCcEEEEECCCcEEEEe-cCC
Q 017317 80 EDVCVDR-NGVLYTATRDGWIKRLH-KNGTWENWKL-IGGDTLLGITT-TQENEILVCDADKGLLKVT-EEG 146 (373)
Q Consensus 80 ~~ia~d~-~G~l~v~~~~g~I~~~~-~~g~~~~~~~-~~~~p~~gl~~-d~~g~L~va~~~~gl~~~~-~~g 146 (373)
.++.+|| .+.++++..++-++.+| .+|+++.... .....+ .++. ..++.++-+..++.+..+| +++
T Consensus 118 Nam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH-~vv~R~~~~qilsG~EDGtvRvWd~kt~ 188 (325)
T KOG0649|consen 118 NAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH-SVVGRNANGQILSGAEDGTVRVWDTKTQ 188 (325)
T ss_pred ceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee-eeeecccCcceeecCCCccEEEEecccc
Confidence 3577886 78888777889999999 7888765433 233445 5554 4567777765544455566 555
No 378
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=37.82 E-value=3e+02 Score=27.73 Aligned_cols=30 Identities=10% Similarity=0.016 Sum_probs=23.3
Q ss_pred eEEEccCCCEEEEEeCCCCeEEEEEecCCCC
Q 017317 222 GVALSKDEDYLVVCETFKFRCLKYWLKGESK 252 (373)
Q Consensus 222 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~ 252 (373)
.+.+-| |+.++|+-.++.++..+++++.+.
T Consensus 105 Dl~wap-ge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 105 DLKWAP-GESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred eeccCC-CceeEEEccCCceeeeeeecccee
Confidence 355667 777999999999999999876543
No 379
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=36.54 E-value=87 Score=18.06 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=13.2
Q ss_pred ceEEEccCCCEEEEEeCCC
Q 017317 221 NGVALSKDEDYLVVCETFK 239 (373)
Q Consensus 221 ~gi~~~~dg~~l~v~~~~~ 239 (373)
...+++|||+.++++....
T Consensus 12 ~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp EEEEE-TTSSEEEEEEECT
T ss_pred cCEEEecCCCEEEEEecCC
Confidence 4577999999888876443
No 380
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=36.24 E-value=4.9e+02 Score=26.62 Aligned_cols=76 Identities=13% Similarity=-0.002 Sum_probs=42.0
Q ss_pred cccccceeEEcCCCcEE--EEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCC-cceEEEccCCCEEEE
Q 017317 158 RINLADDLIAATDGSIY--FSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF-ANGVALSKDEDYLVV 234 (373)
Q Consensus 158 ~~~~~~~l~~~~dG~l~--v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~-~~gi~~~~dg~~l~v 234 (373)
.+....++.+++|+++. .-|.. ++..=.|...|..+++. +...+.. ..+++|..|++.+|.
T Consensus 127 ~f~~Lg~~~~s~D~~~la~s~D~~--------------G~e~y~lr~kdL~tg~~--~~d~i~~~~~~~~Wa~d~~~lfY 190 (682)
T COG1770 127 DFFSLGAASISPDHNLLAYSVDVL--------------GDEQYTLRFKDLATGEE--LPDEITNTSGSFAWAADGKTLFY 190 (682)
T ss_pred cceeeeeeeeCCCCceEEEEEecc--------------cccEEEEEEEecccccc--cchhhcccccceEEecCCCeEEE
Confidence 44455677888888753 33321 11122344455555432 2222332 467899999999988
Q ss_pred EeCCCC----eEEEEEecC
Q 017317 235 CETFKF----RCLKYWLKG 249 (373)
Q Consensus 235 ~~~~~~----~i~~~~~~~ 249 (373)
+....+ ++++..+.+
T Consensus 191 t~~d~~~rp~kv~~h~~gt 209 (682)
T COG1770 191 TRLDENHRPDKVWRHRLGT 209 (682)
T ss_pred EEEcCCCCcceEEEEecCC
Confidence 775443 455555444
No 381
>COG3308 Predicted membrane protein [Function unknown]
Probab=35.21 E-value=64 Score=24.63 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCCCCccchhhhhh-HHHHHHHHHHHHHhcccCCC
Q 017317 1 MTPSSNPPPTTGSSSKRCVPVCS-GIVLSCLLAFTLQIFFFSPI 43 (373)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 43 (373)
||-++.|.| |.++.-+.++ +-++++++.++..-.+.+|.
T Consensus 1 m~t~~~p~q----pr~a~~r~lalgs~iaLi~liL~weL~lap~ 40 (131)
T COG3308 1 MTTSSIPMQ----PRTATARLLALGSLIALIILILSWELWLAPL 40 (131)
T ss_pred CCCCccCCC----hhHHHHHHHHHhhHHHHHHHHHHHHHHcCcC
Confidence 888899985 4445444333 44444554455544444443
No 382
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=35.15 E-value=6.2e+02 Score=27.49 Aligned_cols=109 Identities=13% Similarity=-0.036 Sum_probs=60.9
Q ss_pred EEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHH
Q 017317 223 VALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLL 302 (373)
Q Consensus 223 i~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~ 302 (373)
.|+.+=+++++.+ -...++.|++..++.-+.-... ..+.....+.. -.-++.|++..-
T Consensus 939 ~Ai~~f~~~~Lag--vG~~l~~YdlG~K~lLRk~e~k-~~p~~Is~iqt-~~~RI~VgD~qe------------------ 996 (1205)
T KOG1898|consen 939 GAICPFQGRVLAG--VGRFLRLYDLGKKKLLRKCELK-FIPNRISSIQT-YGARIVVGDIQE------------------ 996 (1205)
T ss_pred eEEeccCCEEEEe--cccEEEEeeCChHHHHhhhhhc-cCceEEEEEee-cceEEEEeeccc------------------
Confidence 4555655555555 3457888887433221111111 11222333332 223688887542
Q ss_pred HhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEE-eCCEEEEeeCCCCeEEEeeCC
Q 017317 303 AAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALE-FDDHLYLGSLNTNFIGKLPLK 371 (373)
Q Consensus 303 ~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~vgs~~~~~i~~~~l~ 371 (373)
....++|.++++.+..|.+..- -.+++.... +.+++-.+...|| +..++++
T Consensus 997 ---------------SV~~~~y~~~~n~l~~fadD~~--pR~Vt~~~~lD~~tvagaDrfGN-i~~vR~P 1048 (1205)
T KOG1898|consen 997 ---------------SVHFVRYRREDNQLIVFADDPV--PRHVTALELLDYDTVAGADRFGN-IAVVRIP 1048 (1205)
T ss_pred ---------------eEEEEEEecCCCeEEEEeCCCc--cceeeEEEEecCCceeeccccCc-EEEEECC
Confidence 2346788888888887765332 246666654 3578888877776 7766665
No 383
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=35.02 E-value=3.4e+02 Score=24.41 Aligned_cols=70 Identities=13% Similarity=0.208 Sum_probs=37.8
Q ss_pred eEECCCCcEEEEECCCcEEEEe--cCC-cEEEee-ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCC
Q 017317 122 ITTTQENEILVCDADKGLLKVT--EEG-VTVLAS-HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH 197 (373)
Q Consensus 122 l~~d~~g~L~va~~~~gl~~~~--~~g-~~~l~~-~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~ 197 (373)
++...+|++....-+. .+.+. ++. ..++.. ..+..+...-.-++..+|+.+.+-..+ +
T Consensus 3 ~~~~~~Gk~lAi~qd~-~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S-----------------~ 64 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQ-CIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAES-----------------T 64 (282)
T ss_pred eeecCCCcEEEEEecc-EEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcC-----------------C
Confidence 4556788877665433 44443 344 222221 122223334467899999987654332 4
Q ss_pred ceEEEEeCCCCe
Q 017317 198 GKLLKYDPSLNE 209 (373)
Q Consensus 198 g~l~~~d~~~~~ 209 (373)
|.|..||..+..
T Consensus 65 G~i~vfdl~g~~ 76 (282)
T PF15492_consen 65 GTIRVFDLMGSE 76 (282)
T ss_pred CeEEEEecccce
Confidence 677777765433
No 384
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=33.94 E-value=4.5e+02 Score=26.19 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=38.3
Q ss_pred cccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-CCCCcceEEEccCCCEEEE
Q 017317 160 NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDEDYLVV 234 (373)
Q Consensus 160 ~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~~gi~~~~dg~~l~v 234 (373)
...|.+..+|.|++.+...- ....|.+.-||.+-...+.... .....+-+.|+|.|+++.-
T Consensus 493 ~~~N~vfwsPkG~fvvva~l--------------~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT 554 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAAL--------------VSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVT 554 (698)
T ss_pred cccceEEEcCCCcEEEEEEe--------------cccccceEEEecchhhhhhccCccccccccceECCCCCEEEE
Confidence 46789999999986655321 1135778999987433332221 2334577899999984443
No 385
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=33.63 E-value=4.3e+02 Score=25.23 Aligned_cols=111 Identities=17% Similarity=0.224 Sum_probs=63.5
Q ss_pred CeEECC--CCcEEEEECCCcEEEEe-cCC-cE--EE-ee-ccCCccccccceeEEcCCC-cEEEEeCCcccccccccccc
Q 017317 121 GITTTQ--ENEILVCDADKGLLKVT-EEG-VT--VL-AS-HVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDL 191 (373)
Q Consensus 121 gl~~d~--~g~L~va~~~~gl~~~~-~~g-~~--~l-~~-~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~ 191 (373)
||++.. .|.|.-+...+.+..++ ... .+ .+ .. ...+ -...++++++.+-. .+|.+.+.
T Consensus 182 glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~-h~~~VeDV~~h~~h~~lF~sv~d------------ 248 (422)
T KOG0264|consen 182 GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSG-HEDVVEDVAWHPLHEDLFGSVGD------------ 248 (422)
T ss_pred ccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeec-CCcceehhhccccchhhheeecC------------
Confidence 666653 45566565556677776 221 11 11 00 1111 11246677777644 56555432
Q ss_pred ccccCCceEEEEeCCCC--eEEEeecC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317 192 LEAKPHGKLLKYDPSLN--ETSILLDS-LFFANGVALSKDEDYLVVCETFKFRCLKYWLKG 249 (373)
Q Consensus 192 ~~~~~~g~l~~~d~~~~--~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~ 249 (373)
.+.|...|..++ +....... -..-+.++|.|-+.+++.+.+.+.+|..+|+..
T Consensus 249 -----d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn 304 (422)
T KOG0264|consen 249 -----DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN 304 (422)
T ss_pred -----CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh
Confidence 467888887743 22111111 223477899998888888888889999999754
No 386
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=33.40 E-value=1.2e+02 Score=18.94 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=20.8
Q ss_pred ceEEEccCCCEEEEEeCCCCeEEEEEecCC
Q 017317 221 NGVALSKDEDYLVVCETFKFRCLKYWLKGE 250 (373)
Q Consensus 221 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~ 250 (373)
.-++++|..+ |+...+.++.|..|.++++
T Consensus 15 ~~~~w~P~md-LiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 15 SCMSWCPTMD-LIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred EEEEECCCCC-EEEEEECCCeEEEEECCCc
Confidence 4678899998 5555456778888877554
No 387
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=33.36 E-value=4.8e+02 Score=27.04 Aligned_cols=133 Identities=14% Similarity=0.107 Sum_probs=66.4
Q ss_pred EEecCCeEEEEEcCC--c---eEEeeeecCccccCeEECCCC-cEEEEECCCcEEE-Ee-cC-C-cEEEeeccCCccccc
Q 017317 92 TATRDGWIKRLHKNG--T---WENWKLIGGDTLLGITTTQEN-EILVCDADKGLLK-VT-EE-G-VTVLASHVNGSRINL 161 (373)
Q Consensus 92 v~~~~g~I~~~~~~g--~---~~~~~~~~~~p~~gl~~d~~g-~L~va~~~~gl~~-~~-~~-g-~~~l~~~~~~~~~~~ 161 (373)
+...+|.|..+|.+. + ...+.+..-..+ .+.|+.-. ++.+.....|.++ +| +. . ...... ....
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~-~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-----nSES 178 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSAN-KLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS-----NSES 178 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhcccee-eeeeccCCccEEEecCCCceEEEEeeecccccccccc-----cchh
Confidence 445678888888322 1 112222112233 56665433 4555544445444 55 32 2 332222 2245
Q ss_pred cceeEEcCC-CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcc----eEEEccCCCEEEEEe
Q 017317 162 ADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN----GVALSKDEDYLVVCE 236 (373)
Q Consensus 162 ~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~----gi~~~~dg~~l~v~~ 236 (373)
+.++.+.|. ++.+++.. .+|.|..+|... .......+.-.+ -+.++|++ .|++.
T Consensus 179 iRDV~fsp~~~~~F~s~~-----------------dsG~lqlWDlRq--p~r~~~k~~AH~GpV~c~nwhPnr--~~lAT 237 (839)
T KOG0269|consen 179 IRDVKFSPGYGNKFASIH-----------------DSGYLQLWDLRQ--PDRCEKKLTAHNGPVLCLNWHPNR--EWLAT 237 (839)
T ss_pred hhceeeccCCCceEEEec-----------------CCceEEEeeccC--chhHHHHhhcccCceEEEeecCCC--ceeee
Confidence 788999874 56666543 257788888642 221111111222 35678955 46665
Q ss_pred CCCCeEEEE-EecCCC
Q 017317 237 TFKFRCLKY-WLKGES 251 (373)
Q Consensus 237 ~~~~~i~~~-~~~~~~ 251 (373)
.++.+..++ ++.+..
T Consensus 238 GGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 238 GGRDKMVKIWDMTDSR 253 (839)
T ss_pred cCCCccEEEEeccCCC
Confidence 566555554 455443
No 388
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=32.91 E-value=2.2e+02 Score=28.10 Aligned_cols=49 Identities=12% Similarity=0.038 Sum_probs=29.7
Q ss_pred CceEEEEeCCCCeEEEeecCCCC-cceEEEccCCCEEEEEeCCCCeEEEEEe
Q 017317 197 HGKLLKYDPSLNETSILLDSLFF-ANGVALSKDEDYLVVCETFKFRCLKYWL 247 (373)
Q Consensus 197 ~g~l~~~d~~~~~~~~~~~~~~~-~~gi~~~~dg~~l~v~~~~~~~i~~~~~ 247 (373)
.|.|-.||.-+.+....+.++.. .-+|..+.+|++++.+.. +-+...++
T Consensus 582 kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~ 631 (776)
T COG5167 582 KGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDV 631 (776)
T ss_pred CCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEec
Confidence 35666677554444444444433 357888999997776653 34555554
No 389
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=32.83 E-value=4.1e+02 Score=24.68 Aligned_cols=145 Identities=11% Similarity=0.100 Sum_probs=79.9
Q ss_pred CEEEEecCCeEEEEEc-CC-ceEEeeeecCccccCeEECC--CC-cEEEEECCCcEEEEe-cC-C--cEEEeeccCCccc
Q 017317 89 VLYTATRDGWIKRLHK-NG-TWENWKLIGGDTLLGITTTQ--EN-EILVCDADKGLLKVT-EE-G--VTVLASHVNGSRI 159 (373)
Q Consensus 89 ~l~v~~~~g~I~~~~~-~g-~~~~~~~~~~~p~~gl~~d~--~g-~L~va~~~~gl~~~~-~~-g--~~~l~~~~~~~~~ 159 (373)
.+-++.++|.|..+++ .| ..+.+...+...+ ++.|-. .. .++.|...+.|..+| +. + .++.....++.++
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N-~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTN-GVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCccc-ceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4557778999999984 33 3445544445556 777743 22 477777665666677 42 2 2222222222111
Q ss_pred cccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE--EEeec-CCCCcceEEEccCCCEEEEEe
Q 017317 160 NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET--SILLD-SLFFANGVALSKDEDYLVVCE 236 (373)
Q Consensus 160 ~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~--~~~~~-~~~~~~gi~~~~dg~~l~v~~ 236 (373)
..++...++++..+..- .......|+.+|-...+. ..+.+ ...-..-+.|.|..--++++.
T Consensus 121 ---~~ld~nck~~ii~~GtE-------------~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG 184 (376)
T KOG1188|consen 121 ---ICLDLNCKKNIIACGTE-------------LTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG 184 (376)
T ss_pred ---eEeeccCcCCeEEeccc-------------cccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEee
Confidence 23333335677655321 112345677777653321 11111 111234577888777799998
Q ss_pred CCCCeEEEEEecCC
Q 017317 237 TFKFRCLKYWLKGE 250 (373)
Q Consensus 237 ~~~~~i~~~~~~~~ 250 (373)
+..+-+..||.+.+
T Consensus 185 SvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 185 SVDGLVNLFDTKKD 198 (376)
T ss_pred cccceEEeeecCCC
Confidence 88888889998755
No 390
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=31.90 E-value=4.4e+02 Score=25.42 Aligned_cols=77 Identities=21% Similarity=0.193 Sum_probs=37.7
Q ss_pred ceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCE
Q 017317 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF 277 (373)
Q Consensus 198 g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l 277 (373)
+.+|.+++.--....+........-+++ .++.|.+.+.+ ++..|++.. . ...++.-+..|.+-.-.+ -.|.+
T Consensus 120 ~KvYvi~~~pp~~~~i~~~i~ecg~l~l--~~nvL~i~~~~--git~yn~~e-~--~k~vw~~~fnGsyvdaRl-ynG~l 191 (603)
T COG4880 120 GKVYVIDKNPPLLETIDCPIPECGILAL--GGNVLAIGEVG--GITLYNLYE-S--SKKVWVYNFNGSYVDARL-YNGEL 191 (603)
T ss_pred CeEEEEcCCCchhhhcccCCccceEEEE--cCcEEEEEEeC--CEEEEEecc-c--cceeEEEecCCceeeeee-eCCEE
Confidence 6788887653333333333333333343 34456666553 466666532 1 122333334443333222 47888
Q ss_pred EEEEe
Q 017317 278 WIAIL 282 (373)
Q Consensus 278 wva~~ 282 (373)
|+++.
T Consensus 192 Yiv~r 196 (603)
T COG4880 192 YIVAR 196 (603)
T ss_pred EEEEc
Confidence 88876
No 391
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=31.88 E-value=85 Score=29.61 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=15.2
Q ss_pred cceEEEccCCCEEEEEeC
Q 017317 220 ANGVALSKDEDYLVVCET 237 (373)
Q Consensus 220 ~~gi~~~~dg~~l~v~~~ 237 (373)
|.=+.+|-||++|||+++
T Consensus 391 PQMlQLSLDGKRLYVt~S 408 (476)
T KOG0918|consen 391 PQMLQLSLDGKRLYVTNS 408 (476)
T ss_pred ceeEEeccCCcEEEEEch
Confidence 455889999999999975
No 392
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=31.87 E-value=4.3e+02 Score=28.14 Aligned_cols=56 Identities=14% Similarity=0.129 Sum_probs=31.4
Q ss_pred ceEEEEeCCCCeEEEe-ecCCCCcceEEEccCCCEEEEEeC-----CCCeEEEEEecCCCCc
Q 017317 198 GKLLKYDPSLNETSIL-LDSLFFANGVALSKDEDYLVVCET-----FKFRCLKYWLKGESKE 253 (373)
Q Consensus 198 g~l~~~d~~~~~~~~~-~~~~~~~~gi~~~~dg~~l~v~~~-----~~~~i~~~~~~~~~~~ 253 (373)
++|...|-++...+.+ ...-...-.-.|||||+.+-.+.+ ++..|++.++.....+
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~ 390 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSG 390 (912)
T ss_pred CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCC
Confidence 4666666665444433 222111223468999998887322 2345888887654433
No 393
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=31.68 E-value=3.8e+02 Score=23.93 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=21.5
Q ss_pred CcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 017317 219 FANGVALSKDEDYLVVCETFKFRCLKYWLK 248 (373)
Q Consensus 219 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 248 (373)
...|+..+..-..||+++. +-.|++|..+
T Consensus 206 QTEG~VaDdEtG~LYIaeE-dvaiWK~~Ae 234 (364)
T COG4247 206 QTEGMVADDETGFLYIAEE-DVAIWKYEAE 234 (364)
T ss_pred cccceeeccccceEEEeec-cceeeecccC
Confidence 4578777766667999985 4579999764
No 394
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.54 E-value=5.3e+02 Score=25.66 Aligned_cols=67 Identities=13% Similarity=0.134 Sum_probs=46.7
Q ss_pred cceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCC
Q 017317 162 ADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKF 240 (373)
Q Consensus 162 ~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~ 240 (373)
+...+..++. .+.++.. .|.|..||...+..+ .......|+-++|+|+|. ++++.+.++
T Consensus 262 v~~ca~sp~E~kLvlGC~------------------DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~ga-i~~V~s~qG 321 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCE------------------DGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGA-IFVVGSEQG 321 (545)
T ss_pred ceEEecCcccceEEEEec------------------CCeEEEEEcCCCeee-eeeecccceEEEEcCCCc-EEEEEcCCc
Confidence 4456677765 5666654 388999998755433 334445699999999998 555545678
Q ss_pred eEEEEEec
Q 017317 241 RCLKYWLK 248 (373)
Q Consensus 241 ~i~~~~~~ 248 (373)
.+..||+.
T Consensus 322 elQ~FD~A 329 (545)
T PF11768_consen 322 ELQCFDMA 329 (545)
T ss_pred eEEEEEee
Confidence 89999964
No 395
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=30.40 E-value=92 Score=24.18 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=16.9
Q ss_pred CCCCCCCCCCCCCCccchhhhhh
Q 017317 1 MTPSSNPPPTTGSSSKRCVPVCS 23 (373)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (373)
|+.-+-|+..+++++++..-+..
T Consensus 1 ~~~~~k~~~~~~~~~~~~~~~~~ 23 (128)
T PRK13717 1 MTTTQKTTDVTAPRRSHWWWTVP 23 (128)
T ss_pred CCccccCCcccccchhcchHHHH
Confidence 67778889999988887544333
No 396
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=29.34 E-value=90 Score=21.99 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=8.9
Q ss_pred CCCCCCCCCCCccc
Q 017317 4 SSNPPPTTGSSSKR 17 (373)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (373)
++.+|....+|++.
T Consensus 46 ~A~~P~~P~~P~~~ 59 (82)
T PF13807_consen 46 PAIVPDKPVSPKRA 59 (82)
T ss_pred ccccCCCCCCCcHH
Confidence 34566666777766
No 397
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=29.00 E-value=4.1e+02 Score=23.49 Aligned_cols=148 Identities=11% Similarity=0.123 Sum_probs=75.1
Q ss_pred cCCcceEEEecCCCEEEEe-cCCeEEEEE-cCCceEEeeeec--------------CccccCeEECCCCcEEEE---ECC
Q 017317 76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIG--------------GDTLLGITTTQENEILVC---DAD 136 (373)
Q Consensus 76 ~~~P~~ia~d~~G~l~v~~-~~g~I~~~~-~~g~~~~~~~~~--------------~~p~~gl~~d~~g~L~va---~~~ 136 (373)
..|+..++. +|.+|.-. ....|++++ ..+........+ ..-. .+++|+.| |||. ...
T Consensus 69 ~~GtG~vVY--ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~i-D~AvDE~G-LWvIYat~~~ 144 (250)
T PF02191_consen 69 WQGTGHVVY--NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDI-DFAVDENG-LWVIYATEDN 144 (250)
T ss_pred eccCCeEEE--CCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceE-EEEEcCCC-EEEEEecCCC
Confidence 456666666 57888543 567899999 444433111111 1113 56777554 6663 222
Q ss_pred Cc---EEEEecCC--c-EEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCce-EEEEeCCCCe
Q 017317 137 KG---LLKVTEEG--V-TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGK-LLKYDPSLNE 209 (373)
Q Consensus 137 ~g---l~~~~~~g--~-~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~-l~~~d~~~~~ 209 (373)
.| |-++|+.- + +...+...- ...-+ +|--=|.||++++.. ..... -+.||..+++
T Consensus 145 ~g~ivvskld~~tL~v~~tw~T~~~k--~~~~n--aFmvCGvLY~~~s~~--------------~~~~~I~yafDt~t~~ 206 (250)
T PF02191_consen 145 NGNIVVSKLDPETLSVEQTWNTSYPK--RSAGN--AFMVCGVLYATDSYD--------------TRDTEIFYAFDTYTGK 206 (250)
T ss_pred CCcEEEEeeCcccCceEEEEEeccCc--hhhcc--eeeEeeEEEEEEECC--------------CCCcEEEEEEECCCCc
Confidence 33 23444322 2 222221111 01112 222248899987641 11133 4678887766
Q ss_pred EEEeec----CCCCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 017317 210 TSILLD----SLFFANGVALSKDEDYLVVCETFKFRCLKYWL 247 (373)
Q Consensus 210 ~~~~~~----~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~ 247 (373)
.+.+.- ......-+...|..+.||+-+.+ .+..|++
T Consensus 207 ~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~G--~~v~Y~v 246 (250)
T PF02191_consen 207 EEDVSIPFPNPYGNISMLSYNPRDKKLYAWDNG--YQVTYDV 246 (250)
T ss_pred eeceeeeeccccCceEeeeECCCCCeEEEEECC--eEEEEEE
Confidence 543221 12233457788888889988754 3555553
No 398
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=28.69 E-value=4.4e+02 Score=23.73 Aligned_cols=36 Identities=14% Similarity=0.059 Sum_probs=24.6
Q ss_pred eccCCcCCcceEEEecCCCEE-EEecCCeEEEEEcCC
Q 017317 71 LGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNG 106 (373)
Q Consensus 71 ~~~g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~~~g 106 (373)
++..+...=+-++..+|+.+. .+...|.|..+|.-|
T Consensus 38 VpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 38 VPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred cCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 344433333458888899888 566889999998555
No 399
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.54 E-value=1.7e+02 Score=27.77 Aligned_cols=64 Identities=13% Similarity=-0.001 Sum_probs=40.1
Q ss_pred cceEEEec--CCCEEEEecCCeEEEEEcCC-ceEEeeeecCccccCeEECCCC--cEEEEECCCcEEEEe
Q 017317 79 PEDVCVDR--NGVLYTATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQEN--EILVCDADKGLLKVT 143 (373)
Q Consensus 79 P~~ia~d~--~G~l~v~~~~g~I~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g--~L~va~~~~gl~~~~ 143 (373)
-+++++.+ .|.+-+++-+..|..+|... ...........+. +.++|.|. .+|.++..+.++.+|
T Consensus 196 IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~w-SC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 196 IRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIW-SCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCce-eeeeccCCcceeEEeccCceEEEEE
Confidence 45677776 44455777777777777322 1111112235566 88888655 488888877788888
No 400
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=28.45 E-value=1.1e+02 Score=28.35 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=25.2
Q ss_pred cEEEEe-cC-C--cEEEeeccCCccccccceeEEcCCC---cEEEEeCCccccccccccccccccCCceEEEEeCCC
Q 017317 138 GLLKVT-EE-G--VTVLASHVNGSRINLADDLIAATDG---SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL 207 (373)
Q Consensus 138 gl~~~~-~~-g--~~~l~~~~~~~~~~~~~~l~~~~dG---~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~ 207 (373)
.|+.++ ++ | +..+...........+.-+..+.|| .+|++|.. |.|||+|..+
T Consensus 182 ~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl~------------------GnlwR~dl~~ 240 (335)
T PF05567_consen 182 ALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDLG------------------GNLWRFDLSS 240 (335)
T ss_dssp EEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEETT------------------SEEEEEE--T
T ss_pred EEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcCC------------------CcEEEEECCC
Confidence 477778 66 6 3333221111111223222334566 47888864 8999999753
No 401
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=27.53 E-value=1.2e+02 Score=18.46 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=16.8
Q ss_pred CeEECCCCcEEEEECCCcEEEEe
Q 017317 121 GITTTQENEILVCDADKGLLKVT 143 (373)
Q Consensus 121 gl~~d~~g~L~va~~~~gl~~~~ 143 (373)
++++. .+.+||++...|+..+|
T Consensus 6 ~v~v~-g~yaYva~~~~Gl~IvD 27 (42)
T PF08309_consen 6 DVAVS-GNYAYVADGNNGLVIVD 27 (42)
T ss_pred EEEEE-CCEEEEEeCCCCEEEEE
Confidence 55553 45799998888999888
No 402
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=27.33 E-value=5.4e+02 Score=24.37 Aligned_cols=64 Identities=16% Similarity=0.084 Sum_probs=38.4
Q ss_pred cceEEEec-CCCEEEEecCCeEEEEEcCCc--eEEeeee--cCccccCeEECCCCcEEEEECC-CcEEEEe
Q 017317 79 PEDVCVDR-NGVLYTATRDGWIKRLHKNGT--WENWKLI--GGDTLLGITTTQENEILVCDAD-KGLLKVT 143 (373)
Q Consensus 79 P~~ia~d~-~G~l~v~~~~g~I~~~~~~g~--~~~~~~~--~~~p~~gl~~d~~g~L~va~~~-~gl~~~~ 143 (373)
--+++++. +-.||.|...+.|++-+...+ ..++... .+... +|...+-.++++.... +.+..+|
T Consensus 108 IF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY-~m~~~P~DN~~~~~t~~~~V~~~D 177 (609)
T KOG4227|consen 108 IFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVY-HMDQHPTDNTLIVVTRAKLVSFID 177 (609)
T ss_pred eEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCccccee-ecccCCCCceEEEEecCceEEEEe
Confidence 34678886 455778888888888873322 2333222 23456 8888877766655433 4455555
No 403
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=26.47 E-value=1.3e+02 Score=26.75 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=35.2
Q ss_pred CcceEEEecCCCEE-EEecCCeEEEEE-cCCceE-EeeeecCccccCeEECCCCcEEEE
Q 017317 78 GPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVC 133 (373)
Q Consensus 78 ~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~L~va 133 (373)
+-..+-+-+|+.|+ .+.++++|.+++ ++.+.- ......+..+ .++|.++-+|..+
T Consensus 253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn-~vAfspd~~lmAa 310 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVN-AVAFSPDCELMAA 310 (323)
T ss_pred CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhccee-EEEeCCCCchhhh
Confidence 34557778899998 556889988887 544322 1222234556 8888887666554
No 404
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=25.97 E-value=68 Score=18.65 Aligned_cols=17 Identities=18% Similarity=0.378 Sum_probs=7.6
Q ss_pred cchhh--hhhHHHHHHHHH
Q 017317 16 KRCVP--VCSGIVLSCLLA 32 (373)
Q Consensus 16 ~~~~~--~~~~~~~~~~~~ 32 (373)
||++. +|.+++.+++++
T Consensus 18 kwirnit~cfal~vv~lvs 36 (40)
T PF13124_consen 18 KWIRNITFCFALLVVVLVS 36 (40)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 55555 333444444433
No 405
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=25.12 E-value=4.8e+02 Score=23.03 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=24.6
Q ss_pred CceEEEEeCCCCeEE-Ee-ecC--C--------CCcceEEEccCCCEEEEE
Q 017317 197 HGKLLKYDPSLNETS-IL-LDS--L--------FFANGVALSKDEDYLVVC 235 (373)
Q Consensus 197 ~g~l~~~d~~~~~~~-~~-~~~--~--------~~~~gi~~~~dg~~l~v~ 235 (373)
...|.+||..++.+. .. +.+ . ...+-+.|..|++.|||.
T Consensus 88 s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvI 138 (250)
T PF02191_consen 88 SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVI 138 (250)
T ss_pred CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEE
Confidence 468999999887765 21 111 1 112346677777778886
No 406
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=23.83 E-value=7.4e+02 Score=24.77 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=77.5
Q ss_pred CCcCCcceEEEec-CCCEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe-cCC--c
Q 017317 74 GILNGPEDVCVDR-NGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG--V 147 (373)
Q Consensus 74 g~~~~P~~ia~d~-~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~g--~ 147 (373)
|-..+-.++++.. ++.|+.|+.+..+..++ .+|+=..... +....+.+++..+.+.+. ....-+..++ +++ +
T Consensus 247 GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~--gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l 324 (537)
T KOG0274|consen 247 GHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ--GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACL 324 (537)
T ss_pred CCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec--CCCceEEEEEccCceEeeccCCceEEEEeccCcceE
Confidence 4444556677765 44555777788888888 5554333222 222203344444434333 3445566666 666 3
Q ss_pred EEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCC-CcceEEEc
Q 017317 148 TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF-FANGVALS 226 (373)
Q Consensus 148 ~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~-~~~gi~~~ 226 (373)
.++.. ....++.+..+ +.+.|+.+. .+.|-.+|+.+++.-....+.. ....+.++
T Consensus 325 ~l~~~-----h~~~V~~v~~~--~~~lvsgs~-----------------d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~ 380 (537)
T KOG0274|consen 325 NLLRG-----HTGPVNCVQLD--EPLLVSGSY-----------------DGTVKVWDPRTGKCLKSLSGHTGRVYSLIVD 380 (537)
T ss_pred EEecc-----ccccEEEEEec--CCEEEEEec-----------------CceEEEEEhhhceeeeeecCCcceEEEEEec
Confidence 33321 11245666665 555555433 3567777776666554444411 12334444
Q ss_pred cCCCEEEEEeCCCCeEEEEEecCC
Q 017317 227 KDEDYLVVCETFKFRCLKYWLKGE 250 (373)
Q Consensus 227 ~dg~~l~v~~~~~~~i~~~~~~~~ 250 (373)
.. + .+++...+..|..+|+.+.
T Consensus 381 ~~-~-~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 381 SE-N-RLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred Cc-c-eEEeeeeccceEeecCCch
Confidence 32 4 4445455566777777654
No 407
>PRK12641 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=23.82 E-value=4e+02 Score=23.52 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=10.2
Q ss_pred eeEEcCCCcEEEE
Q 017317 164 DLIAATDGSIYFS 176 (373)
Q Consensus 164 ~l~~~~dG~l~v~ 176 (373)
.+.+++||.|++.
T Consensus 132 ~i~I~~dG~I~~~ 144 (252)
T PRK12641 132 NLKISSNGVITSI 144 (252)
T ss_pred cEEECCCceEEEE
Confidence 6788889988754
No 408
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=23.80 E-value=5.7e+02 Score=23.40 Aligned_cols=104 Identities=11% Similarity=0.028 Sum_probs=54.8
Q ss_pred CeEECC-CCcEEEEECCCc-EEEEe--cCC-cEEEee-ccCCccccccceeEEcCCCcE-EEEeCCcccccccccccccc
Q 017317 121 GITTTQ-ENEILVCDADKG-LLKVT--EEG-VTVLAS-HVNGSRINLADDLIAATDGSI-YFSVASTKFGLHNWGLDLLE 193 (373)
Q Consensus 121 gl~~d~-~g~L~va~~~~g-l~~~~--~~g-~~~l~~-~~~~~~~~~~~~l~~~~dG~l-~v~~~~~~~~~~~~~~~~~~ 193 (373)
.|+|.+ ...+.+|..+.+ +..++ .+| ...-+. ... ..+-++++..||+. |.+..
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~----~PvL~v~WsddgskVf~g~~--------------- 92 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD----GPVLDVCWSDDGSKVFSGGC--------------- 92 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCCcccchhhhccC----CCeEEEEEccCCceEEeecc---------------
Confidence 788887 556776655544 43344 345 222111 111 13457888889964 44433
Q ss_pred ccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCC-CEEEEEeCCCCeEEEEE
Q 017317 194 AKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE-DYLVVCETFKFRCLKYW 246 (373)
Q Consensus 194 ~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg-~~l~v~~~~~~~i~~~~ 246 (373)
.+.+-.+|..++++..+...-....-+.+-+.. -..+++.+++..|.-+|
T Consensus 93 ---Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 93 ---DKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred ---CCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence 356667787778877664322222223332222 13567767765554444
No 409
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.68 E-value=3.5e+02 Score=29.27 Aligned_cols=87 Identities=11% Similarity=0.125 Sum_probs=45.2
Q ss_pred EEEEecCCeEEEEEcCCceEE--eeeecCccccCeEECCCCcEEEEECCCc-EEEEe-cCC--cEEEeeccCCccccccc
Q 017317 90 LYTATRDGWIKRLHKNGTWEN--WKLIGGDTLLGITTTQENEILVCDADKG-LLKVT-EEG--VTVLASHVNGSRINLAD 163 (373)
Q Consensus 90 l~v~~~~g~I~~~~~~g~~~~--~~~~~~~p~~gl~~d~~g~L~va~~~~g-l~~~~-~~g--~~~l~~~~~~~~~~~~~ 163 (373)
+-++++.|.|...+.+|.... .......|+..+++..+|.+..+....| |..+| ..+ .+.+.. .+.+..++-
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e--~~ap~t~vi 179 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE--HGAPVTGVI 179 (1206)
T ss_pred EEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee--cCCccceEE
Confidence 446777777777765554331 1122233433899999998877655555 55566 444 444432 222323333
Q ss_pred eeEEcCCCc-EEEEeC
Q 017317 164 DLIAATDGS-IYFSVA 178 (373)
Q Consensus 164 ~l~~~~dG~-l~v~~~ 178 (373)
.+..+.++. ++-+|.
T Consensus 180 ~v~~t~~nS~llt~D~ 195 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDT 195 (1206)
T ss_pred EEEEeCCCcEEEEccC
Confidence 333444444 444443
No 410
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=23.13 E-value=7.7e+02 Score=24.68 Aligned_cols=226 Identities=11% Similarity=0.081 Sum_probs=105.6
Q ss_pred cCccccCeEECCCCcEEEEEC-CCcEEEEecCC---cEEEeeccCCccccccceeEEcC--CCcEEEEeCCccccccccc
Q 017317 115 GGDTLLGITTTQENEILVCDA-DKGLLKVTEEG---VTVLASHVNGSRINLADDLIAAT--DGSIYFSVASTKFGLHNWG 188 (373)
Q Consensus 115 ~~~p~~gl~~d~~g~L~va~~-~~gl~~~~~~g---~~~l~~~~~~~~~~~~~~l~~~~--dG~l~v~~~~~~~~~~~~~ 188 (373)
.|-.+ .|.+..+|.|.+... ...+..+|... ...+.+ |. ...+..+.|-| +.++.++...
T Consensus 50 ~GCVN-~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T---gH-taNIFsvKFvP~tnnriv~sgAg--------- 115 (758)
T KOG1310|consen 50 TGCVN-CLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST---GH-TANIFSVKFVPYTNNRIVLSGAG--------- 115 (758)
T ss_pred cceec-ceeecCCCCEEeecCCcceEEeecchhcceeeeeec---cc-ccceeEEeeeccCCCeEEEeccC---------
Confidence 35566 889999999887633 35677777322 222211 11 11223334433 3466666432
Q ss_pred cccccccCCceEEEEeCCCCeEEEeecC-----------CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeE
Q 017317 189 LDLLEAKPHGKLLKYDPSLNETSILLDS-----------LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEI 257 (373)
Q Consensus 189 ~~~~~~~~~g~l~~~d~~~~~~~~~~~~-----------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~ 257 (373)
...|..+|.+..+-.-..++ .....-|+..|++-..+|+....+.|..||+..+..-....
T Consensus 116 --------Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~ 187 (758)
T KOG1310|consen 116 --------DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE 187 (758)
T ss_pred --------cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc
Confidence 34566666542111101111 11223467777775577777788899999987653211110
Q ss_pred -Eec---C-CCC--CCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhh-hccCCCccEEEEEECCCCc
Q 017317 258 -FVE---N-LPG--GPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIK-LVAPLHKKAAVVNVAANGI 329 (373)
Q Consensus 258 -~~~---~-~~g--~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~g~v~~~~~~g~ 329 (373)
... + .+. ....+.+.+....|++..+. .++.+.. + .|+++-.++..-. ...+..+.+++-.|.|.+-
T Consensus 188 ~~~~~l~ny~~~lielk~ltisp~rp~~laVGgs-dpfarLY-D---~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl 262 (758)
T KOG1310|consen 188 DCPSILVNYNPQLIELKCLTISPSRPYYLAVGGS-DPFARLY-D---RRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL 262 (758)
T ss_pred cccHHHHHhchhhheeeeeeecCCCCceEEecCC-Cchhhhh-h---hhhhccCCCCCccccCCCCcccchhheecCccc
Confidence 000 0 011 12235667777666665432 1111110 0 0222221211111 1111333444555555432
Q ss_pred EEEEEeCCCCceecc---eeEEEEeC-CEEEEeeCCCCeEEEeeCCC
Q 017317 330 VIRKFEDPNGKVMSF---VTSALEFD-DHLYLGSLNTNFIGKLPLKA 372 (373)
Q Consensus 330 ~~~~~~~~~g~~~~~---~~~~~~~~-g~L~vgs~~~~~i~~~~l~~ 372 (373)
...+|...+. .+.+++.. |+=.+-++++.+|+.+++..
T Consensus 263 -----kn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 263 -----KNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred -----cCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 1222321222 35555653 54446677888899888753
No 411
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=22.60 E-value=1.5e+02 Score=28.59 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=18.2
Q ss_pred CCCCceeECCCCCEEEEEecC
Q 017317 264 GGPDNIKLAPDGSFWIAILQL 284 (373)
Q Consensus 264 g~p~~i~~d~dG~lwva~~~~ 284 (373)
-+|.++.+|.||..|++..+.
T Consensus 467 ylphgl~~dkdgf~~~tdvas 487 (501)
T KOG3567|consen 467 YLPHGLSIDKDGFYWVTDVAS 487 (501)
T ss_pred ecCCcceecCCCcEEeecccc
Confidence 368999999999999998764
No 412
>PLN02153 epithiospecifier protein
Probab=22.57 E-value=6e+02 Score=23.26 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=13.2
Q ss_pred ceEEEEeCCCCeEEEee
Q 017317 198 GKLLKYDPSLNETSILL 214 (373)
Q Consensus 198 g~l~~~d~~~~~~~~~~ 214 (373)
..+++||+.+.+.+.+.
T Consensus 101 ~~v~~yd~~t~~W~~~~ 117 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLT 117 (341)
T ss_pred CcEEEEECCCCEEEEec
Confidence 46899999988877653
No 413
>PHA03164 hypothetical protein; Provisional
Probab=22.18 E-value=1.2e+02 Score=20.97 Aligned_cols=9 Identities=33% Similarity=0.925 Sum_probs=4.5
Q ss_pred CCCCCCCCc
Q 017317 7 PPPTTGSSS 15 (373)
Q Consensus 7 ~~~~~~~~~ 15 (373)
||++-++++
T Consensus 39 pPpqisrta 47 (88)
T PHA03164 39 PPPQISRTA 47 (88)
T ss_pred CCcccCchh
Confidence 455545544
No 414
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=21.93 E-value=8.8e+02 Score=24.93 Aligned_cols=100 Identities=12% Similarity=0.116 Sum_probs=52.7
Q ss_pred CeEECCCC-cEEEEECCCcEEEEe---cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccc
Q 017317 121 GITTTQEN-EILVCDADKGLLKVT---EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEA 194 (373)
Q Consensus 121 gl~~d~~g-~L~va~~~~gl~~~~---~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~ 194 (373)
++.+.+.+ .|.-++.++.++.+. .+| ...+.-...+....+-.+..+.++++..++.+.
T Consensus 272 sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~--------------- 336 (764)
T KOG1063|consen 272 SVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR--------------- 336 (764)
T ss_pred EEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc---------------
Confidence 66677777 566666666555554 245 233322222211112345567778888887654
Q ss_pred cCCceEEEEeCCCC-eEEE--ee-cCCCCcceEEEccCCCEEEEEeC
Q 017317 195 KPHGKLLKYDPSLN-ETSI--LL-DSLFFANGVALSKDEDYLVVCET 237 (373)
Q Consensus 195 ~~~g~l~~~d~~~~-~~~~--~~-~~~~~~~gi~~~~dg~~l~v~~~ 237 (373)
.|+.+.+..+.+ .... .. .......+++++|.|++|+-+..
T Consensus 337 --~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~ 381 (764)
T KOG1063|consen 337 --TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSL 381 (764)
T ss_pred --cCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEecc
Confidence 455555542211 2221 11 12334567999999996665543
No 415
>PHA03405 hypothetical protein; Provisional
Probab=21.91 E-value=56 Score=24.34 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCCCC
Q 017317 1 MTPSSNPPPTTGSS 14 (373)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (373)
.|||++||+++..-
T Consensus 26 I~PPsIpp~Psys~ 39 (130)
T PHA03405 26 IQPPNISTPPTTAE 39 (130)
T ss_pred CCCCCCCCCCCcHH
Confidence 48999999987643
No 416
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=21.78 E-value=6.9e+02 Score=23.63 Aligned_cols=141 Identities=11% Similarity=0.089 Sum_probs=72.2
Q ss_pred CCCEEEEecCCeEEEEE-cCCceEEe----eeecCccccCeEECCCC-cEE-EEECCCcEEEEe-cCC-c-EEEeeccCC
Q 017317 87 NGVLYTATRDGWIKRLH-KNGTWENW----KLIGGDTLLGITTTQEN-EIL-VCDADKGLLKVT-EEG-V-TVLASHVNG 156 (373)
Q Consensus 87 ~G~l~v~~~~g~I~~~~-~~g~~~~~----~~~~~~p~~gl~~d~~g-~L~-va~~~~gl~~~~-~~g-~-~~l~~~~~~ 156 (373)
.|+|..|+-...|+.+. .+|.+.+= .......- +|.+.+.. .++ -|...+.|..+| +.+ . .-+.....+
T Consensus 224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVE-DLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~ 302 (440)
T KOG0302|consen 224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVE-DLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN 302 (440)
T ss_pred ccccccCccccceEeeeeccCceeecCccccccccchh-hhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence 56777766666677666 34554321 11112234 66676544 233 344445566666 555 1 112121111
Q ss_pred ccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE----EeecCCCCcceEEEccCCCEE
Q 017317 157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS----ILLDSLFFANGVALSKDEDYL 232 (373)
Q Consensus 157 ~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~----~~~~~~~~~~gi~~~~dg~~l 232 (373)
.-+|-|.+..+-.+..+.. ..|.+-..|..+-+.. .+...-.....|.|+|.....
T Consensus 303 ---sDVNVISWnr~~~lLasG~-----------------DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~ 362 (440)
T KOG0302|consen 303 ---SDVNVISWNRREPLLASGG-----------------DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSV 362 (440)
T ss_pred ---CceeeEEccCCcceeeecC-----------------CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCce
Confidence 1345555554434333321 2455555554322211 111111223678999988888
Q ss_pred EEEeCCCCeEEEEEec
Q 017317 233 VVCETFKFRCLKYWLK 248 (373)
Q Consensus 233 ~v~~~~~~~i~~~~~~ 248 (373)
+.+....+.|..+|+.
T Consensus 363 iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 363 IAASGEDNQITIWDLS 378 (440)
T ss_pred EEeccCCCcEEEEEee
Confidence 8888888999999875
No 417
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=21.61 E-value=5.7e+02 Score=22.59 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=18.5
Q ss_pred EEEEeCCCCeEEEee-cCC---CCcceEEEccCCCEEEEEeCCC
Q 017317 200 LLKYDPSLNETSILL-DSL---FFANGVALSKDEDYLVVCETFK 239 (373)
Q Consensus 200 l~~~d~~~~~~~~~~-~~~---~~~~gi~~~~dg~~l~v~~~~~ 239 (373)
|-++|+.+-+++... ..+ ...+++.+ -| .||+.++.+
T Consensus 149 ~skLdp~tl~~e~tW~T~~~k~~~~~aF~i--CG-vLY~v~S~~ 189 (249)
T KOG3545|consen 149 LSKLDPETLEVERTWNTTLPKRSAGNAFMI--CG-VLYVVHSYN 189 (249)
T ss_pred eeccCHHHhheeeeeccccCCCCcCceEEE--ee-eeEEEeccc
Confidence 457888655555432 122 22233333 33 388877643
No 418
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.26 E-value=2.4e+02 Score=28.84 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=17.6
Q ss_pred ceEEEEeCCCCe-EEEeecCCCCcceEEEccCCC
Q 017317 198 GKLLKYDPSLNE-TSILLDSLFFANGVALSKDED 230 (373)
Q Consensus 198 g~l~~~d~~~~~-~~~~~~~~~~~~gi~~~~dg~ 230 (373)
|.|-.+|....+ ++.+......+-.+.|+|-+.
T Consensus 92 gtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~ 125 (825)
T KOG0267|consen 92 GTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGE 125 (825)
T ss_pred CceeeeehhhhhhhhhhhccccCcceeeeccceE
Confidence 445455554333 333344445566677777765
No 419
>PHA02819 hypothetical protein; Provisional
Probab=21.19 E-value=1.8e+02 Score=20.01 Aligned_cols=11 Identities=27% Similarity=-0.028 Sum_probs=5.3
Q ss_pred CCCCCCCCccc
Q 017317 7 PPPTTGSSSKR 17 (373)
Q Consensus 7 ~~~~~~~~~~~ 17 (373)
|....++++.|
T Consensus 36 ~~~~~~~~~~~ 46 (71)
T PHA02819 36 YNKKTKKSFLR 46 (71)
T ss_pred CcccccCChhH
Confidence 44444455555
No 420
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=20.69 E-value=6.4e+02 Score=22.87 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=20.6
Q ss_pred CCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 017317 216 SLFFANGVALSKDEDYLVVCETFKFRCLKYW 246 (373)
Q Consensus 216 ~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~ 246 (373)
++..+|-++.+.|+.++.|...+ ..++-+
T Consensus 169 ~~~~~n~ia~s~dng~vaVg~rG--s~f~T~ 197 (339)
T COG4447 169 GLAVPNEIARSADNGYVAVGARG--SFFSTW 197 (339)
T ss_pred chhhhhhhhhhccCCeEEEecCc--ceEecC
Confidence 35578999999999877777654 455433
No 421
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=20.47 E-value=6.4e+02 Score=22.80 Aligned_cols=131 Identities=13% Similarity=0.133 Sum_probs=61.4
Q ss_pred ceEEEEeCCCC-----eEEEeec-CCC-CcceEEEccCCCEEEEEeCCCCeEEEEEecCCC-CcceeEEecCCCCCCCce
Q 017317 198 GKLLKYDPSLN-----ETSILLD-SLF-FANGVALSKDEDYLVVCETFKFRCLKYWLKGES-KEQTEIFVENLPGGPDNI 269 (373)
Q Consensus 198 g~l~~~d~~~~-----~~~~~~~-~~~-~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~p~~i 269 (373)
|+|+.|+.... +.+.+.. ... .+..++-. ++.++++- +++|+.|+++..+ ......+ ..+.....+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~--~~~~~i~sl 135 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFY--DSPFYITSL 135 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE---BSSSEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhhee--cceEEEEEE
Confidence 77777765542 3333321 111 12334333 44466664 4688888887655 2222211 112223333
Q ss_pred eECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEE
Q 017317 270 KLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSAL 349 (373)
Q Consensus 270 ~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~ 349 (373)
..- +..+++++... .-.+++|+.+++.+..+..... ..+++++.
T Consensus 136 ~~~-~~~I~vgD~~~---------------------------------sv~~~~~~~~~~~l~~va~d~~--~~~v~~~~ 179 (321)
T PF03178_consen 136 SVF-KNYILVGDAMK---------------------------------SVSLLRYDEENNKLILVARDYQ--PRWVTAAE 179 (321)
T ss_dssp EEE-TTEEEEEESSS---------------------------------SEEEEEEETTTE-EEEEEEESS---BEEEEEE
T ss_pred ecc-ccEEEEEEccc---------------------------------CEEEEEEEccCCEEEEEEecCC--CccEEEEE
Confidence 322 33577777542 1246778877775555533221 23455555
Q ss_pred Ee-C-CEEEEeeCCCCeEEEeeCC
Q 017317 350 EF-D-DHLYLGSLNTNFIGKLPLK 371 (373)
Q Consensus 350 ~~-~-g~L~vgs~~~~~i~~~~l~ 371 (373)
.- + +.+.++...++ |..++.+
T Consensus 180 ~l~d~~~~i~~D~~gn-l~~l~~~ 202 (321)
T PF03178_consen 180 FLVDEDTIIVGDKDGN-LFVLRYN 202 (321)
T ss_dssp EE-SSSEEEEEETTSE-EEEEEE-
T ss_pred EecCCcEEEEEcCCCe-EEEEEEC
Confidence 43 3 35555554444 5555443
No 422
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=20.37 E-value=5.9e+02 Score=26.41 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=34.4
Q ss_pred cceEEEccCCCEEEEEeCC--------CCeEEEEEecCCCCcceeEEec---CC--CCCCCceeECCCCCEEEEEecCC
Q 017317 220 ANGVALSKDEDYLVVCETF--------KFRCLKYWLKGESKEQTEIFVE---NL--PGGPDNIKLAPDGSFWIAILQLS 285 (373)
Q Consensus 220 ~~gi~~~~dg~~l~v~~~~--------~~~i~~~~~~~~~~~~~~~~~~---~~--~g~p~~i~~d~dG~lwva~~~~~ 285 (373)
..|..|.++|..|-|+... .+.|.-|..-|...++..+-.. .+ .|.--.|++..|+.||++...+.
T Consensus 261 ~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 261 IVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRPE 339 (1189)
T ss_pred eecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeeccc
Confidence 3567788888877776542 2345555433433333322111 01 11122356677888888876553
No 423
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=20.37 E-value=2.1e+02 Score=26.99 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=16.4
Q ss_pred cCeEECCCCcEEEEECCCcEEEEe
Q 017317 120 LGITTTQENEILVCDADKGLLKVT 143 (373)
Q Consensus 120 ~gl~~d~~g~L~va~~~~gl~~~~ 143 (373)
.|++.|..+.||++|. |+.++
T Consensus 119 kGlAADQt~aL~~gDa---IlSVN 139 (506)
T KOG3551|consen 119 KGLAADQTGALFLGDA---ILSVN 139 (506)
T ss_pred cccccccccceeeccE---EEEec
Confidence 4999999999999874 55555
No 424
>PHA02844 putative transmembrane protein; Provisional
Probab=20.04 E-value=1.9e+02 Score=20.03 Aligned_cols=11 Identities=18% Similarity=-0.034 Sum_probs=5.4
Q ss_pred CCCCCCCCccc
Q 017317 7 PPPTTGSSSKR 17 (373)
Q Consensus 7 ~~~~~~~~~~~ 17 (373)
|....++++.|
T Consensus 38 ~~~~~~~~~~~ 48 (75)
T PHA02844 38 VNKNNVCSSST 48 (75)
T ss_pred ccccccCChhH
Confidence 44444555555
Done!