BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017318
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 124/319 (38%), Positives = 168/319 (52%), Gaps = 23/319 (7%)
Query: 57 EHHFSLFKKKFNKAYASQEEHDHRFTIFKANLRRAARHQKLDPSATHGITQ----FSDLT 112
E ++ +K N+ Y EE R +++ N++ H + H T F D+T
Sbjct: 5 EAQWTKWKAMHNRLYGMNEE-GWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMT 63
Query: 113 PAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFS 172
EFR+ GL+ + Q P+ + P DWREKG V PVK+QG CGS W+FS
Sbjct: 64 SEEFRQVMNGLQNRKPRKGKVFQEPLF--YEAPRSVDWREKGYVTPVKNQGQCGSSWAFS 121
Query: 173 TTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGG 232
TGALEG F TG+L+SLSEQ LVDC PE + GCNGGLM+ AF+Y GG
Sbjct: 122 ATGALEGQMFRKTGRLISLSEQNLVDC---SGPE----GNEGCNGGLMDYAFQYVQDNGG 174
Query: 233 LMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVY 292
L EE YPY T+ +CK++ A+ A F + E + + GP++VAI+A +
Sbjct: 175 LDSEESYPYEATEE--SCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGH 232
Query: 293 --MQTYIGGVSCPYICSRR-LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENG 349
Y G+ CS +DHGVL+VGY G+ YW++KNSWGE WG G
Sbjct: 233 ESFLFYKEGIYFEPDCSSEDMDHGVLVVGY---GFESTESDGNKYWLVKNSWGEEWGMGG 289
Query: 350 YYKICRG-RNVCGVDSMVS 367
Y K+ + RN CG+ S S
Sbjct: 290 YVKMAKDRRNHCGIASAAS 308
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 201 bits (510), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 122/319 (38%), Positives = 167/319 (52%), Gaps = 23/319 (7%)
Query: 57 EHHFSLFKKKFNKAYASQEEHDHRFTIFKANLRRAARHQKLDPSATHGITQ----FSDLT 112
E ++ +K N+ Y EE R +++ N++ H + H T F D+T
Sbjct: 9 EAQWTKWKAMHNRLYGMNEEGWRR-AVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMT 67
Query: 113 PAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFS 172
EFR+ G + + Q P+ + P DWREKG V PVK+QG CGS W+FS
Sbjct: 68 SEEFRQVMNGFQNRKPRKGKVFQEPLF--YEAPRSVDWREKGYVTPVKNQGQCGSXWAFS 125
Query: 173 TTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGG 232
TGALEG F TG+L+SLSEQ LVDC P+ + GCNGGLM+ AF+Y GG
Sbjct: 126 ATGALEGQMFRKTGRLISLSEQNLVDC---SGPQ----GNEGCNGGLMDYAFQYVQDNGG 178
Query: 233 LMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVY 292
L EE YPY T+ +CK++ A+ A F + E + + GP++VAI+A +
Sbjct: 179 LDSEESYPYEATEE--SCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGH 236
Query: 293 --MQTYIGGVSCPYICSRR-LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENG 349
Y G+ CS +DHGVL+VGY G+ YW++KNSWGE WG G
Sbjct: 237 ESFLFYKEGIYFEPDCSSEDMDHGVLVVGY---GFESTESDNNKYWLVKNSWGEEWGMGG 293
Query: 350 YYKICRG-RNVCGVDSMVS 367
Y K+ + RN CG+ S S
Sbjct: 294 YVKMAKDRRNHCGIASAAS 312
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 194 bits (493), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 112/267 (41%), Positives = 148/267 (55%), Gaps = 18/267 (6%)
Query: 105 ITQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGS 164
+ F D+T EFR+ G + + Q P+ + P DWREKG V PVK+QG
Sbjct: 2 MNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLF--YEAPRSVDWREKGYVTPVKNQGQ 59
Query: 165 CGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAF 224
CGSCW+FS TGALEG F TG+L+SLSEQ LVDC P+ + GCNGGLM+ AF
Sbjct: 60 CGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---GPQ----GNEGCNGGLMDYAF 112
Query: 225 EYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPL 284
+Y GGL EE YPY T+ +CK++ A+ A F + E + + GP+
Sbjct: 113 QYVQDNGGLDSEESYPYEATE--ESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPI 170
Query: 285 AVAINAVY--MQTYIGGVSCPYICSRR-LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSW 341
+VAI+A + Y G+ CS +DHGVL+VGY G+ YW++KNSW
Sbjct: 171 SVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGY---GFESTESDNNKYWLVKNSW 227
Query: 342 GESWGENGYYKICRG-RNVCGVDSMVS 367
GE WG GY K+ + RN CG+ S S
Sbjct: 228 GEEWGMGGYVKMAKDRRNHCGIASAAS 254
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/229 (47%), Positives = 138/229 (60%), Gaps = 24/229 (10%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
PA DWREKGAV PVKDQG CGSCW+FST G +EG +A LVSLSEQ LV CD
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCD---- 57
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKA--GGLMREEDYPY-TGTDRGHACKFDKSKIAASV 261
+ D GC GGLM++AF + + + G + E YPY +G C+ + +I A++
Sbjct: 58 -----TIDFGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAI 112
Query: 262 ANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGV--SCPYICSRRLDHGVLLVGY 319
+ + DED IAA L +NGPLA+A++A Y GG+ SC S +LDHGVLLVGY
Sbjct: 113 TDHVDLPQDEDAIAAYLAENGPLAIAVDATSFMDYNGGILTSCT---SEQLDHGVLLVGY 169
Query: 320 GSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVST 368
A PYWIIKNSW WGE+GY +I +G N C ++ VS+
Sbjct: 170 NDA-------SNPPYWIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSS 211
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 125/324 (38%), Positives = 180/324 (55%), Gaps = 29/324 (8%)
Query: 57 EHHFSLFKKKFNKAYASQEEHDHRFTIFKANLRRAARH----QKLDPSATHGITQFSDLT 112
+ +S FK K+Y+S E R IFK N+ + A H +K + + + + QF D++
Sbjct: 24 QEQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMS 83
Query: 113 PAEFRRTYL--GLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWS 170
EF Y+ G +K + P++ + L A DWR AV VKDQG CGS WS
Sbjct: 84 KEEFL-AYVNRGKAQKPKHPENLRMPYVSSKKPLAASVDWRSN-AVSEVKDQGQCGSSWS 141
Query: 171 FSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKA 230
FSTTGA+EG L G+L SLSEQ L+DC ++GC+GG M+SAF Y +
Sbjct: 142 FSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYG-------NAGCDGGWMDSAFSY-IHD 193
Query: 231 GGLMREEDYPYTGTDRGHACKFDKSKIAASVAN-FSVVSLDEDQIAANLVKNGPLAVAIN 289
G+M E YPY +G C+FD S+ +++ + + S DE+ +A + + GP+AVAI+
Sbjct: 194 YGIMSESAYPYEA--QGDYCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAID 251
Query: 290 AV-YMQTYIGGVSCPYICSRR-LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGE 347
A +Q Y GG+ C++ L+HGVL+VGYGS + YWI+KNSWG WGE
Sbjct: 252 ATDELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSD-------NGQDYWILKNSWGSGWGE 304
Query: 348 NGYYKICRGR-NVCGVDSMVSTVA 370
+GY++ R N CG+ + S A
Sbjct: 305 SGYWRQVRNYGNNCGIATAASYPA 328
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 191 bits (485), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 116/322 (36%), Positives = 166/322 (51%), Gaps = 30/322 (9%)
Query: 57 EHHFSLFKKKFNKAYASQEEHDHRFTIFKANLRRAARHQKLDPSATH----GITQFSDLT 112
+HH+ L+KK + K Y + E R I++ NL+ H H G+ D+T
Sbjct: 9 DHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMT 68
Query: 113 PAEFRRTYLGLRRKLRLPKDADQAPILPTND---LPADFDWREKGAVGPVKDQGSCGSCW 169
E + L LR+P + +N LP DWREKG V VK QGSCG+ W
Sbjct: 69 SEEV----MSLMSSLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGAAW 124
Query: 170 SFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLK 229
+FS GALE L TGKLVSLS Q LVDC E + GCNGG M +AF+Y +
Sbjct: 125 AFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTE------KYGNKGCNGGFMTTAFQYIID 178
Query: 230 AGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKN-GPLAVAI 288
G+ + YPY D+ C++D AA+ + ++ + + + V N GP++V +
Sbjct: 179 NKGIDSDASYPYKAMDQ--KCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 236
Query: 289 NAVY--MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWG 346
+A + Y GV C++ ++HGVL+VGYG L K YW++KNSWG ++G
Sbjct: 237 DARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD-------LNGKEYWLVKNSWGHNFG 289
Query: 347 ENGYYKICRGR-NVCGVDSMVS 367
E GY ++ R + N CG+ S S
Sbjct: 290 EEGYIRMARNKGNHCGIASFPS 311
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 121/324 (37%), Positives = 171/324 (52%), Gaps = 38/324 (11%)
Query: 63 FKKKFNKAYASQEEHDHRFTIFKANLRRAARHQKLD----PSATHGITQFSDLTPAEFRR 118
FK + ++Y + +E R IF+ L H + S T G+ F+D+TP E +
Sbjct: 25 FKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDMTPEEMKA 84
Query: 119 TYLGLRRKLRLPKDADQAPILPTNDL--------PADFDWREKGAVGPVKDQGSCGSCWS 170
GL L K+ PI DL PA FDWR++G V PVK+QGSCGS W+
Sbjct: 85 YTHGLIMPADLHKNG--IPIKTREDLGLNASVRYPASFDWRDQGMVSPVKNQGSCGSSWA 142
Query: 171 FSTTGALEGANFLATGKLV--SLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTL 228
FS+TGA+E +A G S+SEQQLVDC P + GC+GG MN AF Y
Sbjct: 143 FSSTGAIESQMKIANGAGYDSSVSEQQLVDC-------VPNAL--GCSGGWMNDAFTYVA 193
Query: 229 KAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVS-LDEDQIAANLVKNGPLAVA 287
+ GG+ E YPY D C +D +++AA ++ + +S DE+ +A + GP+AVA
Sbjct: 194 QNGGIDSEGAYPYEMADGN--CHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVA 251
Query: 288 INA-VYMQTYIGGVSCPYIC-SRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESW 345
+A +Y GGV C + + H VL+VGYG+ + YW++KNSWG+ W
Sbjct: 252 FDADDPFGSYSGGVYYNPTCETNKFTHAVLIVGYGNE-------NGQDYWLVKNSWGDGW 304
Query: 346 GENGYYKICR-GRNVCGVDSMVST 368
G +GY+KI R N CG+ + S
Sbjct: 305 GLDGYFKIARNANNHCGIAGVASV 328
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 129/227 (56%), Gaps = 20/227 (8%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
PA DWR +GAV VKDQG CGSCW+FS G +E FLA L +LSEQ LV CD
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-- 59
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKA--GGLMREEDYPY-TGTDRGHACKFDKSKIAASV 261
DSGC+GGLMN+AFE+ ++ G + E+ YPY +G C + A++
Sbjct: 60 -------DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATI 112
Query: 262 ANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGS 321
+ DE QIAA L NGP+AVA++A TY GGV + S +LDHGVLLVGY
Sbjct: 113 TGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCV-SEQLDHGVLLVGYND 171
Query: 322 AGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVST 368
+ PYWIIKNSW WGE GY +I +G N C V S+
Sbjct: 172 SAAV-------PYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASS 211
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 128/227 (56%), Gaps = 20/227 (8%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
PA DWR +GAV VKDQG CGSCW+FS G +E FLA L +LSEQ LV CD
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-- 59
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKA--GGLMREEDYPY-TGTDRGHACKFDKSKIAASV 261
DSGC+GGLMN+AFE+ ++ G + E+ YPY +G C + A++
Sbjct: 60 -------DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATI 112
Query: 262 ANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGS 321
+ DE QIAA L NGP+AVA++A TY GGV + S LDHGVLLVGY
Sbjct: 113 TGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCV-SEALDHGVLLVGYND 171
Query: 322 AGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVST 368
+ PYWIIKNSW WGE GY +I +G N C V S+
Sbjct: 172 S-------AAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASS 211
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 182 bits (461), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 165/324 (50%), Gaps = 38/324 (11%)
Query: 63 FKKKFNKAYASQEEHDHRFTIFKANLRRAA----RHQKLDPSATHGITQFSDLTPAEFRR 118
+K+ +NK Y ++ HR I++ N++ RH + T G+ QF+D+T EF+
Sbjct: 8 WKRMYNKEYNGADDQ-HRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKA 66
Query: 119 TYLGLRRKLR------LPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFS 172
YL + +P +A+ + P DWRE G V VKDQG+CGS W+FS
Sbjct: 67 KYLTEMSRASDILSHGVPYEANNRAV------PDKIDWRESGYVTEVKDQGNCGSGWAFS 120
Query: 173 TTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGG 232
TTG +EG +S SEQQLVDC ++GC GGLM +A++Y LK G
Sbjct: 121 TTGTMEGQYMKNERTSISFSEQQLVDCSRPWG-------NNGCGGGLMENAYQY-LKQFG 172
Query: 233 LMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLV-KNGPLAVAINAV 291
L E YPYT + C+++K A V F V + NLV GP AVA++
Sbjct: 173 LETESSYPYTAVE--GQCRYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVE 230
Query: 292 Y-MQTYIGGVSCPYICS-RRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENG 349
Y G+ CS R++H VL VGYG+ G YWI+KNSWG SWGE G
Sbjct: 231 SDFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQG-------GTDYWIVKNSWGLSWGERG 283
Query: 350 YYKICRGR-NVCGVDSMVSTVAAA 372
Y ++ R R N+CG+ S+ S A
Sbjct: 284 YIRMVRNRGNMCGIASLASLPMVA 307
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 181 bits (460), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 133/229 (58%), Gaps = 17/229 (7%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP DWR+KG V PVK+Q CGSCW+FS TGALEG F TGKLVSLSEQ LVDC
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSR-- 58
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
P+ + GCNGG M AF+Y + GGL EE YPY D CK+ A
Sbjct: 59 -PQG----NQGCNGGFMARAFQYVKENGGLDSEESYPYVAVD--EICKYRPENSVAQDTG 111
Query: 264 FSVVSLDEDQIAANLVKN-GPLAVAINAVY--MQTYIGGVSC-PYICSRRLDHGVLLVGY 319
F+VV+ +++ V GP++VA++A + Q Y G+ P S+ LDHGVL+VGY
Sbjct: 112 FTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGY 171
Query: 320 GSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNV-CGVDSMVS 367
G G K YW++KNSWG WG NGY KI + +N CG+ + S
Sbjct: 172 GFEGANSDNSK---YWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAAS 217
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 181 bits (459), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 103/227 (45%), Positives = 128/227 (56%), Gaps = 20/227 (8%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
PA DWR +GAV VKDQG CGSCW+FS G +E FLA L +L+EQ LV CD
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-- 59
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKA--GGLMREEDYPY-TGTDRGHACKFDKSKIAASV 261
DSGC+GGLMN+AFE+ ++ G + E+ YPY +G C + A++
Sbjct: 60 -------DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATI 112
Query: 262 ANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGS 321
+ DE QIAA L NGP+AVA++A TY GGV + S +LDHGVLLVGY
Sbjct: 113 TGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCV-SEQLDHGVLLVGYND 171
Query: 322 AGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVST 368
PYWIIKNSW WGE GY +I +G N C V S+
Sbjct: 172 G-------AAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASS 211
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 181 bits (459), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 103/227 (45%), Positives = 128/227 (56%), Gaps = 20/227 (8%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
PA DWR +GAV VKDQG CGSCW+FS G +E FLA L +L+EQ LV CD
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-- 59
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKA--GGLMREEDYPY-TGTDRGHACKFDKSKIAASV 261
DSGC+GGLMN+AFE+ ++ G + E+ YPY +G C + A++
Sbjct: 60 -------DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATI 112
Query: 262 ANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGS 321
+ DE QIAA L NGP+AVA++A TY GGV + S +LDHGVLLVGY
Sbjct: 113 TGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCV-SEQLDHGVLLVGYND 171
Query: 322 AGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVST 368
PYWIIKNSW WGE GY +I +G N C V S+
Sbjct: 172 G-------AAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASS 211
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 180 bits (457), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 103/227 (45%), Positives = 132/227 (58%), Gaps = 16/227 (7%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
P DWREKG V PVK+QG CGSCW+FS TGALEG F TG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---G 58
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF 264
P+ + GCNGGLM+ AF+Y GGL EE YPY T+ +CK++ A+ A F
Sbjct: 59 PQG----NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE--SCKYNPKYSVANDAGF 112
Query: 265 SVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRR-LDHGVLLVGYGS 321
+ E + + GP++VAI+A + Y G+ CS +DHGVL+VGY
Sbjct: 113 VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGY-- 170
Query: 322 AGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRG-RNVCGVDSMVS 367
G+ YW++KNSWGE WG GY K+ + RN CG+ S S
Sbjct: 171 -GFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 216
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 132/229 (57%), Gaps = 16/229 (6%)
Query: 143 DLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHE 202
+ P DWREKG V PVK+QG CGSCW+FS TGALEG F TG+L+SLSEQ LVDC
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCS-- 58
Query: 203 CDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVA 262
P+ + GCNGGLM+ AF+Y GGL EE YPY T+ +CK++ A+
Sbjct: 59 -GPQG----NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE--SCKYNPKYSVANDT 111
Query: 263 NFSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRR-LDHGVLLVGY 319
F + E + + GP++VAI+A + Y G+ CS +DHGVL+VGY
Sbjct: 112 GFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGY 171
Query: 320 GSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRG-RNVCGVDSMVS 367
G+ YW++KNSWGE WG GY K+ + RN CG+ S S
Sbjct: 172 ---GFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 217
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 102/227 (44%), Positives = 131/227 (57%), Gaps = 16/227 (7%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
P DWREKG V PVK+QG CGSCW+FS TGALEG F TG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---G 58
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF 264
P+ + GCNGGLM+ AF+Y GGL EE YPY T+ +CK++ A+ F
Sbjct: 59 PQG----NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE--SCKYNPKYSVANDTGF 112
Query: 265 SVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRR-LDHGVLLVGYGS 321
+ E + + GP++VAI+A + Y G+ CS +DHGVL+VGY
Sbjct: 113 VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGY-- 170
Query: 322 AGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRG-RNVCGVDSMVS 367
G+ YW++KNSWGE WG GY K+ + RN CG+ S S
Sbjct: 171 -GFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 216
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 177 bits (450), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 132/229 (57%), Gaps = 17/229 (7%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP DWR+KG V PVK+Q CGS W+FS TGALEG F TGKLVSLSEQ LVDC
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSR-- 58
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
P+ + GCNGG M AF+Y + GGL EE YPY D CK+ A
Sbjct: 59 -PQG----NQGCNGGFMARAFQYVKENGGLDSEESYPYVAVD--EICKYRPENSVAQDTG 111
Query: 264 FSVVSLDEDQIAANLVKN-GPLAVAINAVY--MQTYIGGVSC-PYICSRRLDHGVLLVGY 319
F+VV+ +++ V GP++VA++A + Q Y G+ P S+ LDHGVL+VGY
Sbjct: 112 FTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGY 171
Query: 320 GSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNV-CGVDSMVS 367
G G K YW++KNSWG WG NGY KI + +N CG+ + S
Sbjct: 172 GFEGANSDNSK---YWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAAS 217
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 177 bits (449), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 102/227 (44%), Positives = 132/227 (58%), Gaps = 16/227 (7%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
P DWREKG V PVK+QG CGS W+FS TGALEG F TG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---G 58
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF 264
P+ + GCNGGLM+ AF+Y GGL EE YPY T+ +CK++ A+ A F
Sbjct: 59 PQ----GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE--SCKYNPKYSVANDAGF 112
Query: 265 SVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRR-LDHGVLLVGYGS 321
+ E + + GP++VAI+A + Y G+ CS +DHGVL+VGY
Sbjct: 113 VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGY-- 170
Query: 322 AGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRG-RNVCGVDSMVS 367
G+ + YW++KNSWGE WG GY K+ + RN CG+ S S
Sbjct: 171 -GFESTESDDNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 216
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/229 (44%), Positives = 131/229 (57%), Gaps = 16/229 (6%)
Query: 143 DLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHE 202
+ P DWREKG V PVK+QG CGS W+FS TGALEG F TG+L+SLSEQ LVDC
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCS-- 58
Query: 203 CDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVA 262
P+ + GCNGGLM+ AF+Y GGL EE YPY T+ +CK++ A+
Sbjct: 59 -GPQ----GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE--SCKYNPKYSVANDT 111
Query: 263 NFSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRR-LDHGVLLVGY 319
F + E + + GP++VAI+A + Y G+ CS +DHGVL+VGY
Sbjct: 112 GFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGY 171
Query: 320 GSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRG-RNVCGVDSMVS 367
G+ YW++KNSWGE WG GY K+ + RN CG+ S S
Sbjct: 172 ---GFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 217
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/227 (44%), Positives = 130/227 (57%), Gaps = 16/227 (7%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
P DWREKG V PVK+QG CGS W+FS TGALEG F TG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---G 58
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF 264
P+ + GCNGGLM+ AF+Y GGL EE YPY T+ +CK++ A+ F
Sbjct: 59 PQ----GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE--SCKYNPKYSVANDTGF 112
Query: 265 SVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRR-LDHGVLLVGYGS 321
+ E + + GP++VAI+A + Y G+ CS +DHGVL+VGY
Sbjct: 113 VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGY-- 170
Query: 322 AGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRG-RNVCGVDSMVS 367
G+ YW++KNSWGE WG GY K+ + RN CG+ S S
Sbjct: 171 -GFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 216
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 175 bits (444), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 101/227 (44%), Positives = 130/227 (57%), Gaps = 16/227 (7%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
P DWREKG V PVK+QG CGS W+FS TGALEG F TG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---G 58
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF 264
P+ + GCNGGLM+ AF+Y GGL EE YPY T+ +CK++ A+ F
Sbjct: 59 PQ----GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE--SCKYNPKYSVANDTGF 112
Query: 265 SVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRR-LDHGVLLVGYGS 321
+ E + + GP++VAI+A + Y G+ CS +DHGVL+VGY
Sbjct: 113 VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGY-- 170
Query: 322 AGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRG-RNVCGVDSMVS 367
G+ YW++KNSWGE WG GY K+ + RN CG+ S S
Sbjct: 171 -GFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 216
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 174 bits (441), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 106/227 (46%), Positives = 136/227 (59%), Gaps = 21/227 (9%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
P ++DWR KGAV VKDQG CGSCW+FS TG +EG FL G L+SLSEQ+L+DCD
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD---- 57
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF 264
D C GGL ++A+ GGL E+DY Y G +C+F K + +
Sbjct: 58 -----KMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQG--HMQSCQFSAEKAKVYIQDS 110
Query: 265 SVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPY--ICSRRL-DHGVLLVGYGS 321
+S +E ++AA L K GP++VAINA MQ Y G+S P +CS L DH VLLVGYG
Sbjct: 111 VELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYG- 169
Query: 322 AGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVST 368
+ + P+W IKNSWG WGE GYY + RG CGV++M S+
Sbjct: 170 ------QRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASS 210
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/319 (35%), Positives = 161/319 (50%), Gaps = 28/319 (8%)
Query: 59 HFSLFKKKFNKAYASQEEHDHRFTIFKANLRRAARHQKLDPSATH----GITQFSDLTPA 114
H+ L+KK K Y ++ + R I++ NL+ + H H + D+T
Sbjct: 10 HWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSE 69
Query: 115 EFRRTYLGLRRKLRLPKDADQAPILP-TNDLPADFDWREKGAVGPVKDQGSCGSCWSFST 173
E + GL+ L + D I P D+R+KG V PVK+QG CGSCW+FS+
Sbjct: 70 EVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSS 129
Query: 174 TGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGL 233
GALEG TGKL++LS Q LVDC E D GC GG M +AF+Y K G+
Sbjct: 130 VGALEGQLKKKTGKLLNLSPQNLVDCVSEND---------GCGGGYMTNAFQYVQKNRGI 180
Query: 234 MREEDYPYTGTDRGHACKFDKSKIAASVANF-SVVSLDEDQIAANLVKNGPLAVAINA-- 290
E+ YPY G + +C ++ + AA + + +E + + + GP++VAI+A
Sbjct: 181 DSEDAYPYVGQEE--SCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASL 238
Query: 291 VYMQTYIGGVSCPYIC-SRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENG 349
Q Y GV C S L+H VL VGYG K +WIIKNSWGE+WG G
Sbjct: 239 TSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQ-------KGNKHWIIKNSWGENWGNKG 291
Query: 350 YYKICRGR-NVCGVDSMVS 367
Y + R + N CG+ ++ S
Sbjct: 292 YILMARNKNNACGIANLAS 310
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/230 (42%), Positives = 132/230 (57%), Gaps = 24/230 (10%)
Query: 145 PADFDWREKGA-VGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
P DWR+KG V PVK+QGSCGSCW+FSTTGALE A +ATGK++SL+EQQLVDC
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
+ + GC GGL + AFEY G+M E+ YPY G D CKF K A V +
Sbjct: 62 N-------NHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQD--DHCKFQPDKAIAFVKD 112
Query: 264 FSVVSL-DEDQIAANLVKNGPLAVAINA-----VYMQTYIGGVSCPYICSRRLDHGVLLV 317
+ +++ DE+ + + P++ A +Y + SC + +++H VL V
Sbjct: 113 VANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSC-HKTPDKVNHAVLAV 171
Query: 318 GYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVS 367
GYG PYWI+KNSWG WG NGY+ I RG+N+CG+ + S
Sbjct: 172 GYGEE-------NGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACAS 214
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 168 bits (425), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 99/226 (43%), Positives = 127/226 (56%), Gaps = 24/226 (10%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
+PA DWR+KGAV VKDQG CGSCW+FST A+EG N + T KLVSLSEQ+LVDCD +
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTD- 60
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKI-AASVA 262
+ GCNGGLM+ AFE+ + GG+ E +YPY D C K A S+
Sbjct: 61 -------QNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYD--GTCDVSKENAPAVSID 111
Query: 263 NFSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICSRRLDHGVLLVGYG 320
V +++ V N P++VAI+A Q Y GV C LDHGV +VGYG
Sbjct: 112 GHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGS-CGTELDHGVAIVGYG 170
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRG----RNVCGV 362
+ + YW +KNSWG WGE GY ++ RG +CG+
Sbjct: 171 TT------IDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGI 210
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 167 bits (423), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 123/215 (57%), Gaps = 18/215 (8%)
Query: 138 ILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLV 197
+LP+ +LPA DWR +G V PVKDQ CGSCW+FSTTGALEGA+ TGKLVSLSEQ+L+
Sbjct: 2 VLPS-ELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELM 60
Query: 198 DCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKI 257
DC + C+GG MN AF+Y L +GG+ E+ YPY D C+ +
Sbjct: 61 DCSR-------AEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARD--EECRAQSCEK 111
Query: 258 AASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYM--QTYIGGVSCPYICSRRLDHGVL 315
+ F V + + P+++AI A M Q Y GV C LDHGVL
Sbjct: 112 VVKILGFKDVPRRSEAAMKAALAKSPVSIAIEADQMPFQFYHEGVF-DASCGTDLDHGVL 170
Query: 316 LVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGY 350
LVGYG+ + +K +WI+KNSWG WG +GY
Sbjct: 171 LVGYGTD-----KESKKDFWIMKNSWGTGWGRDGY 200
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 132/228 (57%), Gaps = 19/228 (8%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP DWREKG V VK QGSCG+CW+FS GALE L TGKLVSLS Q LVD C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 56
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
E+ G + GCNGG M +AF+Y + G+ + YPY D+ C++D AA+ +
Sbjct: 57 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ--KCQYDSKYRAATCSK 112
Query: 264 FSVVSLDEDQIAANLVKN-GPLAVAINAVY--MQTYIGGVSCPYICSRRLDHGVLLVGYG 320
++ + + + V N GP++V ++A + Y GV C++ ++HGVL+VGYG
Sbjct: 113 YTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG 172
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 367
L K YW++KNSWG ++GE GY ++ R + N CG+ S S
Sbjct: 173 D-------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 213
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 133/228 (58%), Gaps = 19/228 (8%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP DWREKG V VK QGSCG+CW+FS GALE L TGKLVSLS Q LVD C
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 59
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
E+ G + GCNGG M +AF+Y + G+ + YPY D+ C++D AA+ +
Sbjct: 60 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ--KCQYDSKYRAATCSK 115
Query: 264 FSVVSLDEDQIAANLVKN-GPLAVAINAVYMQTYI--GGVSCPYICSRRLDHGVLLVGYG 320
++ + + + V N GP++V ++A + ++ GV C++ ++HGVL+VGYG
Sbjct: 116 YTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG 175
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 367
L K YW++KNSWG ++GE GY ++ R + N CG+ S S
Sbjct: 176 D-------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 216
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 133/228 (58%), Gaps = 19/228 (8%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP DWREKG V VK QGSCG+CW+FS GALE L TGKLVSLS Q LVD C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 56
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
E+ G + GCNGG M +AF+Y + G+ + YPY D+ C++D AA+ +
Sbjct: 57 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ--KCQYDSKYRAATCSK 112
Query: 264 FSVVSLDEDQIAANLVKN-GPLAVAINAVYMQTYI--GGVSCPYICSRRLDHGVLLVGYG 320
++ + + + V N GP++V ++A + ++ GV C++ ++HGVL+VGYG
Sbjct: 113 YTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG 172
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 367
L K YW++KNSWG ++GE GY ++ R + N CG+ S S
Sbjct: 173 D-------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 213
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 133/228 (58%), Gaps = 19/228 (8%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP DWREKG V VK QGSCG+CW+FS GALE L TGKLVSLS Q LVD C
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 57
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
E+ G + GCNGG M +AF+Y + G+ + YPY D+ C++D AA+ +
Sbjct: 58 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ--KCQYDSKYRAATCSK 113
Query: 264 FSVVSLDEDQIAANLVKN-GPLAVAINAVYMQTYI--GGVSCPYICSRRLDHGVLLVGYG 320
++ + + + V N GP++V ++A + ++ GV C++ ++HGVL+VGYG
Sbjct: 114 YTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG 173
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 367
L K YW++KNSWG ++GE GY ++ R + N CG+ S S
Sbjct: 174 D-------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 214
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 133/228 (58%), Gaps = 19/228 (8%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP DWREKG V VK QGSCG+CW+FS GALE L TGKLVSLS Q LVD C
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 57
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
E+ G + GCNGG M +AF+Y + G+ + YPY D+ C++D AA+ +
Sbjct: 58 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ--KCQYDSKYRAATCSK 113
Query: 264 FSVVSLDEDQIAANLVKN-GPLAVAINAVYMQTYI--GGVSCPYICSRRLDHGVLLVGYG 320
++ + + + V N GP++V ++A + ++ GV C++ ++HGVL+VGYG
Sbjct: 114 YTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG 173
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 367
L K YW++KNSWG ++GE GY ++ R + N CG+ S S
Sbjct: 174 D-------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 214
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 164 bits (416), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 132/228 (57%), Gaps = 19/228 (8%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP DWREKG V VK QGSCG+CW+FS GALE L TGKLVSLS Q LVD C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 56
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
E+ G + GCNGG M +AF+Y + G+ + YPY D+ C++D AA+
Sbjct: 57 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ--KCQYDSKYRAATCRK 112
Query: 264 FSVVSLDEDQIAANLVKN-GPLAVAINAVYMQTYI--GGVSCPYICSRRLDHGVLLVGYG 320
++ + + + V N GP++V ++A + ++ GV C++ ++HGVL+VGYG
Sbjct: 113 YTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG 172
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 367
L K YW++KNSWG ++GE GY ++ R + N CG+ S S
Sbjct: 173 D-------LNGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPS 213
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 164 bits (415), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 133/228 (58%), Gaps = 19/228 (8%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP DWREKG V VK QGSCG+CW+FS GALE L TGKLV+LS Q LVD C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVD----C 56
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
E+ G + GCNGG M +AF+Y + G+ + YPY D+ C++D AA+ +
Sbjct: 57 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ--KCQYDSKYRAATCSK 112
Query: 264 FSVVSLDEDQIAANLVKN-GPLAVAINAVYMQTYI--GGVSCPYICSRRLDHGVLLVGYG 320
++ + + + V N GP++V ++A + ++ GV C++ ++HGVL+VGYG
Sbjct: 113 YTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG 172
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 367
L K YW++KNSWG ++GE GY ++ R + N CG+ S S
Sbjct: 173 D-------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 213
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 133/228 (58%), Gaps = 19/228 (8%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP DWREKG V VK QGSCG+CW+FS GALE L TGKLVSLS Q LVD C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 56
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
++ G + GCNGG M +AF+Y + G+ + YPY D+ C++D + AA+
Sbjct: 57 STKKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ--KCQYDSAYRAATCRK 112
Query: 264 FSVVSLDEDQIAANLVKN-GPLAVAINAVYMQTYI--GGVSCPYICSRRLDHGVLLVGYG 320
++ + + + V N GP++V ++A + ++ GV C++ ++HGVL+VGYG
Sbjct: 113 YTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG 172
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 367
L K YW++KNSWG ++GE GY ++ R + N CG+ S S
Sbjct: 173 D-------LNGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPS 213
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 123/216 (56%), Gaps = 21/216 (9%)
Query: 142 NDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDH 201
+DLP DWRE GAV PVK+QG CGSCW+FST A+EG N + TG L+SLSEQQLVDC
Sbjct: 1 DDLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCT- 59
Query: 202 ECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASV 261
+ + GC GG MN AF++ + GG+ EE YPY G D C + S+
Sbjct: 60 --------TANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQD--GICNSTVNAPVVSI 109
Query: 262 ANFSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRRLDHGVLLVGY 319
++ V +Q V N P++V ++A Q Y G+ C+ +H + +VGY
Sbjct: 110 DSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGS-CNISANHALTVVGY 168
Query: 320 GSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICR 355
G+ +K +WI+KNSWG++WGE+GY + R
Sbjct: 169 GTE-------NDKDFWIVKNSWGKNWGESGYIRAER 197
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 121/218 (55%), Gaps = 21/218 (9%)
Query: 141 TNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCD 200
+DLP DWR+KGAV VKDQG CGSCW+FST ++EG N + TG LVSLSEQ+L+DCD
Sbjct: 1 VSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD 60
Query: 201 HECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGH---ACKFDKSKI 257
+ + GC GGLM++AFEY GGL+ E YPY RG A S +
Sbjct: 61 T--------ADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAA-RGTCNVARAAQNSPV 111
Query: 258 AASVANFSVVSLDEDQIAANLVKNGPLAVAINAV--YMQTYIGGVSCPYICSRRLDHGVL 315
+ V + ++ A V N P++VA+ A Y GV C LDHGV
Sbjct: 112 VVHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGE-CGTELDHGVA 170
Query: 316 LVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKI 353
+VGYG + K YW +KNSWG SWGE GY ++
Sbjct: 171 VVGYG------VAEDGKAYWTVKNSWGPSWGEQGYIRV 202
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 162 bits (409), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 130/228 (57%), Gaps = 19/228 (8%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP DWREKG V VK QGSCG+ W+FS GALE L TGKLVSLS Q LVDC E
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTE- 60
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
+ GCNGG M +AF+Y + G+ + YPY D+ C++D AA+ +
Sbjct: 61 -----KYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ--KCQYDSKYRAATCSK 113
Query: 264 FSVVSLDEDQIAANLVKN-GPLAVAINAVYMQTYI--GGVSCPYICSRRLDHGVLLVGYG 320
++ + + + V N GP++V ++A + ++ GV C++ ++HGVL+VGYG
Sbjct: 114 YTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG 173
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 367
L K YW++KNSWG ++GE GY ++ R + N CG+ S S
Sbjct: 174 D-------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 214
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 162 bits (409), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 130/228 (57%), Gaps = 19/228 (8%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP DWREKG V VK QGSCG+ W+FS GALE L TGKLVSLS Q LVDC E
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTE- 61
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
+ GCNGG M +AF+Y + G+ + YPY D+ C++D AA+ +
Sbjct: 62 -----KYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ--KCQYDSKYRAATCSK 114
Query: 264 FSVVSLDEDQIAANLVKN-GPLAVAINAVYMQTYI--GGVSCPYICSRRLDHGVLLVGYG 320
++ + + + V N GP++V ++A + ++ GV C++ ++HGVL+VGYG
Sbjct: 115 YTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG 174
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 367
L K YW++KNSWG ++GE GY ++ R + N CG+ S S
Sbjct: 175 D-------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 215
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 130/228 (57%), Gaps = 19/228 (8%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP DWREKG V VK QGSCG+ W+FS GALE L TGKLVSLS Q LVDC E
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTE- 59
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
+ GCNGG M +AF+Y + G+ + YPY D+ C++D AA+ +
Sbjct: 60 -----KYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ--KCQYDSKYRAATCSK 112
Query: 264 FSVVSLDEDQIAANLVKN-GPLAVAINAVYMQTYI--GGVSCPYICSRRLDHGVLLVGYG 320
++ + + + V N GP++V ++A + ++ GV C++ ++HGVL+VGYG
Sbjct: 113 YTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG 172
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 367
L K YW++KNSWG ++GE GY ++ R + N CG+ S S
Sbjct: 173 D-------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 213
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 130/228 (57%), Gaps = 21/228 (9%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
P DWREKG V PVK+QG CG+ ++FS TGALEG F TG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCS---G 58
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF 264
P+ + GCNGGLM+ AF+Y GGL EE YPY T+ +CK++ A+ F
Sbjct: 59 PQ----GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE--SCKYNPKYSVANDVGF 112
Query: 265 SVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYI----CSRRLDHGVLLVGYG 320
+ E + + GP++VAI+A + ++++ Y S L+H +L+VGYG
Sbjct: 113 VDIPKQEKALMKAVATVGPISVAIDAGH-ESFLFYKEGIYFSSDCSSSSLNHAMLVVGYG 171
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRG-RNVCGVDSMVS 367
+ YW++KNSWGE WG GY K+ + RN CG+ S S
Sbjct: 172 ------FISNNQKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 213
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 160 bits (406), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 129/228 (56%), Gaps = 19/228 (8%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP DWREKG V VK QGSCG+ W+FS GALE L TGKLVSLS Q LVDC E
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTE- 59
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
+ GCNGG M +AF+Y + G+ + YPY D C++D AA+ +
Sbjct: 60 -----KYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDL--KCQYDSKYRAATCSK 112
Query: 264 FSVVSLDEDQIAANLVKN-GPLAVAINAVYMQTYI--GGVSCPYICSRRLDHGVLLVGYG 320
++ + + + V N GP++V ++A + ++ GV C++ ++HGVL+VGYG
Sbjct: 113 YTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG 172
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 367
L K YW++KNSWG ++GE GY ++ R + N CG+ S S
Sbjct: 173 D-------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 213
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/325 (34%), Positives = 150/325 (46%), Gaps = 34/325 (10%)
Query: 49 TNNDLLGAEHHFSLFKK---KFNKAYASQEEHDHRFTIFKANLRRAARHQKLDPSATHGI 105
+ NDL E LF+ K NK Y + +E +RF IFK NL+ K + S G+
Sbjct: 52 SQNDLTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGL 111
Query: 106 TQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND--LPADFDWREKGAVGPVKDQG 163
F+D++ EF+ Y G + +L D +P DWR+KGAV PVK+QG
Sbjct: 112 NVFADMSNDEFKEKYTGSIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQG 171
Query: 164 SCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSA 223
SCGS W+FS +E + TG L SEQ+L+DCD GCNGG SA
Sbjct: 172 SCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRRS---------YGCNGGYPWSA 222
Query: 224 FEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGP 283
+ + G+ YPY G R + +K AA V + + N P
Sbjct: 223 LQLVAQY-GIHYRNTYPYEGVQR-YCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQP 280
Query: 284 LAVAINAVY--MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSW 341
++V + A Q Y GG+ C ++DH V VGYG Y +I+NSW
Sbjct: 281 VSVVLEAAGKDFQLYRGGIFVG-PCGNKVDHAVAAVGYGPN-----------YILIRNSW 328
Query: 342 GESWGENGYYKICRGR----NVCGV 362
G WGENGY +I RG VCG+
Sbjct: 329 GTGWGENGYIRIKRGTGNSYGVCGL 353
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 159 bits (401), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 129/228 (56%), Gaps = 23/228 (10%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
P D+REKG V PVK+QG CGSCW+FS+ GALEG TGKL++LS Q LVDC E D
Sbjct: 2 PDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF 264
GC GG M +AF+Y K G+ E+ YPY G + +C ++ + AA +
Sbjct: 62 ---------GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE--ESCMYNPTGKAAKCRGY 110
Query: 265 -SVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYIC-SRRLDHGVLLVGYG 320
+ +E + + + GP++VAI+A Q Y GV C S L+H VL VGYG
Sbjct: 111 REIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG 170
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 367
+ K +WIIKNSWGE+WG GY K+ R + N CG+ ++ S
Sbjct: 171 ES-------KGNKHWIIKNSWGENWGMGGYIKMARNKNNACGIANLAS 211
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 127/228 (55%), Gaps = 23/228 (10%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
P D+R+KG V PVK+QG CGSCW+FS+ GALEG TGKL++LS Q LVDC E D
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF 264
GC GG M +AF+Y + G+ E+ YPY G D +C ++ + AA +
Sbjct: 62 ---------GCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQD--ESCMYNPTGKAAKCRGY 110
Query: 265 -SVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICSR-RLDHGVLLVGYG 320
+ +E + + + GP++VAI+A Q Y GV CS L+H VL VGYG
Sbjct: 111 REIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYG 170
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 367
K +WIIKNSWGESWG GY + R + N CG+ ++ S
Sbjct: 171 IQ-------KGNKHWIIKNSWGESWGNKGYILMARNKNNACGIANLAS 211
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 154 bits (390), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 132/233 (56%), Gaps = 32/233 (13%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP+ DWR KGAV +K+Q CGSCW+FS A+E N + TG+L+SLSEQ+LVDCD
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCD--- 57
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
+ GCNGG MN+AF+Y + GG+ +++YPY+ +CK + ++ S+
Sbjct: 58 ------TASHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQ--GSCKPYRLRV-VSING 108
Query: 264 FSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGV-SCPYICSRRLDHGVLLVGYG 320
F V+ + + + V + P++V + A Q Y G+ + P C +HGV++VGYG
Sbjct: 109 FQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGP--CGTAQNHGVVIVGYG 166
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNV------CGVDSMVS 367
+ K YWI++NSWG++WG GY I RNV CG+ + S
Sbjct: 167 TQ-------SGKNYWIVRNSWGQNWGNQGY--IWMERNVASSAGLCGIAQLPS 210
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 127/228 (55%), Gaps = 23/228 (10%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
P D+R+KG V PVK+QG CGSCW+FS+ GALEG TGKL++LS Q LVDC E D
Sbjct: 4 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 63
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF 264
GC GG M +AF+Y K G+ E+ YPY G + +C ++ + AA +
Sbjct: 64 ---------GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE--ESCMYNPTGKAAKCRGY 112
Query: 265 -SVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYIC-SRRLDHGVLLVGYG 320
+ +E + + + GP++VAI+A Q Y GV C S L+H VL VGYG
Sbjct: 113 REIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG 172
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 367
K +WIIKNSWGE+WG GY + R + N CG+ ++ S
Sbjct: 173 IQ-------KGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLAS 213
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 127/228 (55%), Gaps = 23/228 (10%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
P D+R+KG V PVK+QG CGSCW+FS+ GALEG TGKL++LS Q LVDC E D
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 60
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF 264
GC GG M +AF+Y K G+ E+ YPY G + +C ++ + AA +
Sbjct: 61 ---------GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE--ESCMYNPTGKAAKCRGY 109
Query: 265 -SVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYIC-SRRLDHGVLLVGYG 320
+ +E + + + GP++VAI+A Q Y GV C S L+H VL VGYG
Sbjct: 110 REIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG 169
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 367
K +WIIKNSWGE+WG GY + R + N CG+ ++ S
Sbjct: 170 IQ-------KGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLAS 210
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 127/228 (55%), Gaps = 23/228 (10%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
P D+R+KG V PVK+QG CGSCW+FS+ GALEG TGKL++LS Q LVDC E D
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF 264
GC GG M +AF+Y K G+ E+ YPY G + +C ++ + AA +
Sbjct: 62 ---------GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE--ESCMYNPTGKAAKCRGY 110
Query: 265 -SVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYIC-SRRLDHGVLLVGYG 320
+ +E + + + GP++VAI+A Q Y GV C S L+H VL VGYG
Sbjct: 111 REIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG 170
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 367
K +WIIKNSWGE+WG GY + R + N CG+ ++ S
Sbjct: 171 IQ-------KGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLAS 211
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 122/223 (54%), Gaps = 24/223 (10%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP DWR GAV +KDQG CGSCW+FST A+EG N +ATG L+SLSEQ+LVDC
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFD-KSKIAASVA 262
+ GC+GG M F++ + GG+ E +YPYT + C D + + S+
Sbjct: 61 NTR-------GCDGGFMTDGFQFIINNGGINTEANYPYTAEE--GQCNLDLQQEKYVSID 111
Query: 263 NFSVVSLDEDQIAANLVKNGPLAVAINAV--YMQTYIGGV-SCPYICSRRLDHGVLLVGY 319
+ V + + V P++VA+ A Q Y G+ + P C +DH V +VGY
Sbjct: 112 TYENVPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGP--CGTAVDHAVTIVGY 169
Query: 320 GSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGV 362
G+ G YWI+KNSWG +WGE GY +I RNV GV
Sbjct: 170 GTEG-------GIDYWIVKNSWGTTWGEEGYMRI--QRNVGGV 203
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 128/228 (56%), Gaps = 23/228 (10%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
P D+R+KG V PVK+QG CGSCW+FS+ GALEG ATG L++L+ Q LVDC E D
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSEND 61
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF 264
GC GG M +AF+Y + G+ E+ YPY G D +C ++ + AA +
Sbjct: 62 ---------GCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQD--ESCMYNPTGKAAKCRGY 110
Query: 265 -SVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICSR-RLDHGVLLVGYG 320
+ +E + + GP++VAI+A Q Y GV CS L+H VL VGYG
Sbjct: 111 REIPEGNEAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYG 170
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 367
I+ K +WIIKNSWGESWG GY + R + N CG+ ++ S
Sbjct: 171 ------IQAGNK-HWIIKNSWGESWGNAGYILMARNKNNACGIANLAS 211
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 126/224 (56%), Gaps = 23/224 (10%)
Query: 149 DWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEP 208
D+R+KG V PVK+QG CGSCW+FS+ GALEG TGKL++LS Q LVDC E D
Sbjct: 4 DYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND---- 59
Query: 209 GSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF-SVV 267
GC GG M +AF+Y K G+ E+ YPY G + +C ++ + AA + +
Sbjct: 60 -----GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE--ESCMYNPTGKAAKCRGYREIP 112
Query: 268 SLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYIC-SRRLDHGVLLVGYGSAGY 324
+E + + + GP++VAI+A Q Y GV C S L+H VL VGYG
Sbjct: 113 EGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQ-- 170
Query: 325 APIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 367
K +WIIKNSWGE+WG GY + R + N CG+ ++ S
Sbjct: 171 -----KGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLAS 209
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 115/328 (35%), Positives = 158/328 (48%), Gaps = 37/328 (11%)
Query: 49 TNNDLLGAEHHFSLFKK---KFNKAYASQEEHDHRFTIFKANLRRAARHQKLDPSATHGI 105
+ +DL E LF NK Y + +E +RF IFK NL K + S G+
Sbjct: 8 SQDDLTSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGL 67
Query: 106 TQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILP-TNDLPADFDWREKGAVGPVKDQGS 164
+F+DL+ EF Y+G + + D+ I +LP + DWR+KGAV PV+ QGS
Sbjct: 68 NEFADLSNDEFNEKYVGSLIDATIEQSYDEEFINEDIVNLPENVDWRKKGAVTPVRHQGS 127
Query: 165 CGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAF 224
CGSCW+FS +EG N + TGKLV LSEQ+LVDC+ GC GG A
Sbjct: 128 CGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR---------SHGCKGGYPPYAL 178
Query: 225 EYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANL---VKN 281
EY K G +R + YPY + C+ ++ + S V + NL +
Sbjct: 179 EYVAKNGIHLRSK-YPYKA--KQGTCR--AKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK 233
Query: 282 GPLAVAINAV--YMQTYIGGV-SCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIK 338
P++V + + Q Y GG+ P C ++D V VGYG +G L IK
Sbjct: 234 QPVSVVVESKGRPFQLYKGGIFEGP--CGTKVDGAVTAVGYGKSGGKGYIL-------IK 284
Query: 339 NSWGESWGENGYYKICRG----RNVCGV 362
NSWG +WGE GY +I R VCG+
Sbjct: 285 NSWGTAWGEKGYIRIKRAPGNSPGVCGL 312
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 126/233 (54%), Gaps = 29/233 (12%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
PA DWR+KGAV VKDQG+CG CW+F TGA+EG + + TG+L+S+SEQQ+VDCD
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF 264
GG + AF + + GG+ + +YPYTG D C +K IAA + +
Sbjct: 62 XXX---------GGDADDAFRWVITNGGIASDANYPYTGVD--GTCDLNK-PIAARIDGY 109
Query: 265 SVVSLDEDQIAANLVKNGPLAVAI--NAVYMQTYIG-GVSCPYICS---RRLDHGVLLVG 318
+ V + + K P++V I ++ Q Y G G+ CS +DH VL+VG
Sbjct: 110 TNVPNSSSALLDAVAKQ-PVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVG 168
Query: 319 YGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRN----VCGVDSMVS 367
YGS G YWI+KNSWG WG +GY I R N VC +D+ S
Sbjct: 169 YGSNG------TNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGS 215
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 121/223 (54%), Gaps = 24/223 (10%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP DWR GAV +KDQG CGS W+FST A+EG N +ATG L+SLSEQ+LVDC
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFD-KSKIAASVA 262
+ GC+GG M F++ + GG+ E +YPYT + C D + + S+
Sbjct: 61 NTR-------GCDGGFMTDGFQFIINNGGINTEANYPYTAEE--GQCNLDLQQEKYVSID 111
Query: 263 NFSVVSLDEDQIAANLVKNGPLAVAINAV--YMQTYIGGV-SCPYICSRRLDHGVLLVGY 319
+ V + + V P++VA+ A Q Y G+ + P C +DH V +VGY
Sbjct: 112 TYENVPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGP--CGTAVDHAVTIVGY 169
Query: 320 GSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGV 362
G+ G YWI+KNSWG +WGE GY +I RNV GV
Sbjct: 170 GTEG-------GIDYWIVKNSWGTTWGEEGYMRI--QRNVGGV 203
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 125/227 (55%), Gaps = 31/227 (13%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP DWR KGAV P+K+QG CGSCW+FST +E N + TG L+SLSEQQLVDC +
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKK- 59
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
+ GC GG + A++Y + GG+ E +YPY C+ K K+
Sbjct: 60 --------NHGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQ--GPCRAAK-KVVRIDGC 108
Query: 264 FSVVSLDEDQIAANLVKNGPLAVAINAV--YMQTYIGGV-SCPYICSRRLDHGVLLVGYG 320
V +E+ + N V + P VAI+A Q Y GG+ + P C +L+HGV++VGYG
Sbjct: 109 KGVPQCNENAL-KNAVASQPSVVAIDASSKQFQHYKGGIFTGP--CGTKLNHGVVIVGYG 165
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICR--GRNVCGVDSM 365
K YWI++NSWG WGE GY ++ R G +CG+ +
Sbjct: 166 -----------KDYWIVRNSWGRHWGEQGYTRMKRVGGCGLCGIARL 201
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 122/231 (52%), Gaps = 25/231 (10%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP+ DWR GAV +K QG CG CW+FS +EG N + TG L+SLSEQ+L+DC
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFD-KSKIAASVA 262
+ GCNGG + F++ + GG+ EE+YPYT D C D +++ ++
Sbjct: 61 NTR-------GCNGGYITDGFQFIINNGGINTEENYPYTAQD--GECNVDLQNEKYVTID 111
Query: 263 NFSVVSLDEDQIAANLVKNGPLAVAINA---VYMQTYIGGVSCPYICSRRLDHGVLLVGY 319
+ V + + V P++VA++A + Q G + P C +DH V +VGY
Sbjct: 112 TYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGP--CGTAIDHAVTIVGY 169
Query: 320 GSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICR---GRNVCGVDSMVS 367
G+ G YWI+KNSW +WGE GY +I R G CG+ +M S
Sbjct: 170 GTEG-------GIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPS 213
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 147 bits (371), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 123/227 (54%), Gaps = 31/227 (13%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP DWR+KGAV PVK+QGSCGSCW+FST +E N + TG L+SLSEQ+LVDCD +
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKK- 59
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
+ GC GG A++Y + GG+ + +YPY C+ SK+ S+
Sbjct: 60 --------NHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQ--GPCQ-AASKV-VSIDG 107
Query: 264 FSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGV-SCPYICSRRLDHGVLLVGYG 320
++ V + V P VAI+A Q Y G+ S P C +L+HGV +VGY
Sbjct: 108 YNGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGP--CGTKLNHGVTIVGY- 164
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICR--GRNVCGVDSM 365
+ YWI++NSWG WGE GY ++ R G +CG+ +
Sbjct: 165 ----------QANYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARL 201
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 121/227 (53%), Gaps = 31/227 (13%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP DWR+KGAV PVK+QG CGSCW+FST +E N + TG L+SLSEQQLVDC+ +
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKK- 59
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
+ GC GG A++Y + GG+ E +YPY C+ +K +
Sbjct: 60 --------NHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQ--GPCR--AAKKVVRIDG 107
Query: 264 FSVVSLDEDQIAANLVKNGPLAVAINAV--YMQTYIGGV-SCPYICSRRLDHGVLLVGYG 320
+ V + V + P VAI+A Q Y G+ S P C +L+HGV++VGY
Sbjct: 108 YKGVPHCNENALKKAVASQPSVVAIDASSKQFQHYKSGIFSGP--CGTKLNHGVVIVGY- 164
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICR--GRNVCGVDSM 365
K YWI++NSWG WGE GY ++ R G +CG+ +
Sbjct: 165 ----------WKDYWIVRNSWGRYWGEQGYIRMKRVGGCGLCGIARL 201
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/179 (46%), Positives = 106/179 (59%), Gaps = 12/179 (6%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
P DWREKG V PVK+QG CGSCW+FS TGALEG F TG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---G 58
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF 264
P+ + GCNGGLM+ AF+Y GGL EE YPY T+ +CK++ A+ F
Sbjct: 59 PQG----NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE--SCKYNPKYSVANDTGF 112
Query: 265 SVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRR-LDHGVLLVGYG 320
+ E + + GP++VAI+A + Y G+ CS +DHGVL+VGYG
Sbjct: 113 VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 144 bits (363), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 127/242 (52%), Gaps = 39/242 (16%)
Query: 143 DLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHE 202
D P +DW +KG + VK QG CGS W+FS TGA+E A+ +ATG LVSLSEQ+L+DC E
Sbjct: 1 DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDE 60
Query: 203 CDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVA 262
+ GC G +FE+ +K GG+ E DYPY D CK ++ + ++
Sbjct: 61 SE---------GCYNGWHYQSFEWVVKHGGIASEADYPYKARDG--KCKANEIQDKVTID 109
Query: 263 NFSVVSLDEDQIAA-------NLVKNGPLAVAINAVYMQTYIGGV------SCPYICSRR 309
N+ V L + + + V P++V+I+A Y GG+ S PY
Sbjct: 110 NYGVQILSNESTESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIYDGGNCSSPY----G 165
Query: 310 LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR----NVCGVDSM 365
++H VL+VGYGS YWI KNSWGE WG +GY +I R VCG++
Sbjct: 166 INHFVLIVGYGSE-------DGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYF 218
Query: 366 VS 367
S
Sbjct: 219 AS 220
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 105/179 (58%), Gaps = 12/179 (6%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
P DWREKG V PVK+QG CGS W+FS TGALEG F TG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---G 58
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF 264
P+ + GCNGGLM+ AF+Y GGL EE YPY T+ +CK++ A+ F
Sbjct: 59 PQ----GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE--SCKYNPKYSVANDTGF 112
Query: 265 SVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRR-LDHGVLLVGYG 320
+ E + + GP++VAI+A + Y G+ CS +DHGVL+VGYG
Sbjct: 113 VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 140 bits (354), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 118/230 (51%), Gaps = 23/230 (10%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP+ DWR GAV +K QG CG W+FS +EG N + +G L+SLSEQ+L+DC
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
+ GC+GG + F++ + GG+ EE+YPYT D K ++
Sbjct: 61 NTR-------GCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKY-VTIDT 112
Query: 264 FSVVSLDEDQIAANLVKNGPLAVAINA---VYMQTYIGGVSCPYICSRRLDHGVLLVGYG 320
+ V + + V P++VA++A + Q G + P C +DH +++VGYG
Sbjct: 113 YENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGP--CGTAVDHAIVIVGYG 170
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICR---GRNVCGVDSMVS 367
+ G YWI+KNSW +WGE GY +I R G CG+ +M S
Sbjct: 171 TEG-------GVDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPS 213
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 123/216 (56%), Gaps = 25/216 (11%)
Query: 146 ADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDP 205
A +DWR V PVKDQ +CGSCW+FS+ G++E + KL++LSEQ+LVDC +
Sbjct: 20 AAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK--- 76
Query: 206 EEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFS 265
+ GCNGGL+N+AFE ++ GG+ + DYPY +D + C D+ + N+
Sbjct: 77 ------NYGCNGGLINNAFEDMIELGGICPDGDYPYV-SDAPNLCNIDRCTEKYGIKNY- 128
Query: 266 VVSLDEDQIAANLVKNGPLAVAIN-----AVYMQTYIGGVSCPYICSRRLDHGVLLVGYG 320
+S+ ++++ L GP+++++ A Y + G C +L+H V+LVG+G
Sbjct: 129 -LSVPDNKLKEALRFLGPISISVAVSDDFAFYKEGIFDGE-----CGDQLNHAVMLVGFG 182
Query: 321 SAGYA-PIRLKEKP--YWIIKNSWGESWGENGYYKI 353
P+ K + Y+IIKNSWG+ WGE G+ I
Sbjct: 183 MKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINI 218
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 115/225 (51%), Gaps = 31/225 (13%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
P DWREKGAV PVK+Q CGSCW+FST +EG N + TG+L+SLSEQ+L+DC+
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERR-- 59
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF 264
GC+GG ++ +Y + G+ E +YPY +G DK + +
Sbjct: 60 -------SHGCDGGYQTTSLQYVVD-NGVHTEREYPYE-KKQGRCRAKDKKGPKVYITGY 110
Query: 265 SVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGV-SCPYICSRRLDHGVLLVGYGS 321
V +++ + N P++V ++ Q Y GG+ P C DH V VGYG
Sbjct: 111 KYVPANDEISLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGP--CGTNTDHAVTAVGYG- 167
Query: 322 AGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRG----RNVCGV 362
K Y ++KNSWG +WGE GY +I R + CGV
Sbjct: 168 ----------KTYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGV 202
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 122/216 (56%), Gaps = 25/216 (11%)
Query: 146 ADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDP 205
A +DWR V PVKDQ +CGS W+FS+ G++E + KL++LSEQ+LVDC +
Sbjct: 19 AAYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK--- 75
Query: 206 EEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFS 265
+ GCNGGL+N+AFE ++ GG+ + DYPY +D + C D+ + N+
Sbjct: 76 ------NYGCNGGLINNAFEDMIELGGICPDGDYPYV-SDAPNLCNIDRCTEKYGIKNY- 127
Query: 266 VVSLDEDQIAANLVKNGPLAVAIN-----AVYMQTYIGGVSCPYICSRRLDHGVLLVGYG 320
+S+ ++++ L GP+++++ A Y + G C +L+H V+LVG+G
Sbjct: 128 -LSVPDNKLKEALRFLGPISISVAVSDDFAFYKEGIFDGE-----CGDQLNHAVMLVGFG 181
Query: 321 SAGYA-PIRLKEKP--YWIIKNSWGESWGENGYYKI 353
P+ K + Y+IIKNSWG+ WGE G+ I
Sbjct: 182 MKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINI 217
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 115/226 (50%), Gaps = 29/226 (12%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
P DWR KGAV PVK+QG+CGS W+FST +EG N + TG L+ LSEQ+LVDCD
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKH-- 59
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACK-FDKSKIAASVAN 263
GC GG ++ +Y + G+ + YPY + + C+ DK +
Sbjct: 60 -------SYGCKGGYQTTSLQY-VANNGVHTSKVYPYQA--KQYKCRATDKPGPKVKITG 109
Query: 264 FSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGV-SCPYICSRRLDHGVLLVGYG 320
+ V + + + N PL+V + A Q Y GV P C +LDH V VGYG
Sbjct: 110 YKRVPSNXETSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGP--CGTKLDHAVTAVGYG 167
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICR----GRNVCGV 362
++ K Y IIKNSWG +WGE GY ++ R + CGV
Sbjct: 168 TS-------DGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGV 206
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 109/225 (48%), Gaps = 29/225 (12%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
+P DWR+KGAV PVK+QGSCGSCW+FS +EG + TG L SEQ+L+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
GCNGG SA + + G+ YPY G R + +K AA
Sbjct: 60 --------SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQR-YCRSREKGPYAAKTDG 109
Query: 264 FSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRRLDHGVLLVGYGS 321
V + + N P++V + A Q Y GG+ C ++DH V VGYG
Sbjct: 110 VRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVG-PCGNKVDHAVAAVGYGP 168
Query: 322 AGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR----NVCGV 362
Y +IKNSWG WGENGY +I RG VCG+
Sbjct: 169 N-----------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGL 202
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 108/225 (48%), Gaps = 29/225 (12%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
+P DWR+KGAV PVK+QGSCGSCW+FS +EG + TG L SEQ+L+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
GCNGG SA + + G+ YPY G R + +K AA
Sbjct: 60 --------SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQR-YCRSREKGPYAAKTDG 109
Query: 264 FSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRRLDHGVLLVGYGS 321
V + N P++V + A Q Y GG+ C ++DH V VGYG
Sbjct: 110 VRQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVG-PCGNKVDHAVAAVGYGP 168
Query: 322 AGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR----NVCGV 362
Y +IKNSWG WGENGY +I RG VCG+
Sbjct: 169 N-----------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGL 202
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 145/318 (45%), Gaps = 48/318 (15%)
Query: 73 SQEEHDHRFTIFKANLRRAARHQKLDPSATHGITQFSDLTPAEFRRTYLGLRRKLRLPKD 132
SQE++ +R + N +A + +AT ++ LT + R G RK+ PK
Sbjct: 135 SQEKYSNRLYKYDHNFVKAINAIQKSWTAT-TYMEYETLTLGDMIRRSGGHSRKIPRPKP 193
Query: 133 AD-----QAPILPTNDLPADFDWREK---GAVGPVKDQGSCGSCWSFSTTGALEGANFLA 184
A Q IL LP +DWR V PV++Q SCGSC+SF++ G LE +
Sbjct: 194 APLTAEIQQKIL---FLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRIL 250
Query: 185 TGKLVS--LSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYT 242
T + LS Q++V C GC GG + GL+ E +PYT
Sbjct: 251 TNNSQTPILSPQEVVSCSQYAQ---------GCEGGFPYLIAGKYAQDFGLVEEACFPYT 301
Query: 243 GTDRGHACKFDKSKIAASVANFSVVS-----LDEDQIAANLVKNGPLAVAINA------- 290
GTD CK + + + V +E + LV +GP+AVA
Sbjct: 302 GTDS--PCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHY 359
Query: 291 ---VYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGE 347
+Y T G+ P+ +H VLLVGYG+ + + YWI+KNSWG WGE
Sbjct: 360 KKGIYHHT---GLRDPFNPFELTNHAVLLVGYGTDSASGMD-----YWIVKNSWGTGWGE 411
Query: 348 NGYYKICRGRNVCGVDSM 365
NGY++I RG + C ++S+
Sbjct: 412 NGYFRIRRGTDECAIESI 429
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 107/224 (47%), Gaps = 29/224 (12%)
Query: 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD 204
P DWR+KGAV PVK+QGSCGSCW+FS +EG + TG L SEQ+L+DCD
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR-- 59
Query: 205 PEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF 264
GCNGG SA + + G+ YPY G R + +K AA
Sbjct: 60 -------SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQR-YCRSREKGPYAAKTDGV 110
Query: 265 SVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRRLDHGVLLVGYGSA 322
V + N P++V + A Q Y GG+ C ++DH V VGYG
Sbjct: 111 RQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVG-PCGNKVDHAVAAVGYGPN 169
Query: 323 GYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR----NVCGV 362
Y +IKNSWG WGENGY +I RG VCG+
Sbjct: 170 -----------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGL 202
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 108/225 (48%), Gaps = 29/225 (12%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
+P DWR+KGAV PVK+QGSCGS W+FS +EG + TG L SEQ+L+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
GCNGG SA + + G+ YPY G R + +K AA
Sbjct: 60 --------SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQR-YCRSREKGPYAAKTDG 109
Query: 264 FSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRRLDHGVLLVGYGS 321
V + + N P++V + A Q Y GG+ C ++DH V VGYG
Sbjct: 110 VRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVG-PCGNKVDHAVAAVGYGP 168
Query: 322 AGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR----NVCGV 362
Y +IKNSWG WGENGY +I RG VCG+
Sbjct: 169 N-----------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGL 202
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 108/225 (48%), Gaps = 29/225 (12%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
+P DWR+KGAV PVK+QGSCGS W+FS +EG + TG L SEQ+L+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
GCNGG SA + + G+ YPY G R + +K AA
Sbjct: 60 --------SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQR-YCRSREKGPYAAKTDG 109
Query: 264 FSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRRLDHGVLLVGYGS 321
V + + N P++V + A Q Y GG+ C ++DH V VGYG
Sbjct: 110 VRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVG-PCGNKVDHAVAAVGYGP 168
Query: 322 AGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR----NVCGV 362
Y +IKNSWG WGENGY +I RG VCG+
Sbjct: 169 N-----------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGL 202
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 124 bits (311), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 107/225 (47%), Gaps = 29/225 (12%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
+P DWR+KGAV PVK+QGSCGS W+FS +EG + TG L SEQ+L+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
GCNGG SA + + G+ YPY G R + +K AA
Sbjct: 60 --------SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQR-YCRSREKGPYAAKTDG 109
Query: 264 FSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRRLDHGVLLVGYGS 321
V + N P++V + A Q Y GG+ C ++DH V VGYG
Sbjct: 110 VRQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVG-PCGNKVDHAVAAVGYGP 168
Query: 322 AGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR----NVCGV 362
Y +IKNSWG WGENGY +I RG VCG+
Sbjct: 169 N-----------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGL 202
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 109/206 (52%), Gaps = 15/206 (7%)
Query: 148 FDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEE 207
+DWR G V PVKDQ CGSCW+FS+ G++E + L SEQ+LVDC +
Sbjct: 24 YDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVK----- 78
Query: 208 PGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVV 267
++GC GG + +AF+ + GGL ++DYPY ++ C + ++ ++ V
Sbjct: 79 ----NNGCYGGYITNAFDDMIDLGGLCSQDDYPYV-SNLPETCNLKRCNERYTIKSY--V 131
Query: 268 SLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYA-- 325
S+ +D+ L GP++++I A + G C +H V+LVGYG
Sbjct: 132 SIPDDKFKEALRYLGPISISIAASDDFAFYRGGFYDGECGAAPNHAVILVGYGMKDIYNE 191
Query: 326 -PIRLKEKPYWIIKNSWGESWGENGY 350
R+++ Y+IIKNSWG WGE GY
Sbjct: 192 DTGRMEKFYYYIIKNSWGSDWGEGGY 217
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 113/226 (50%), Gaps = 27/226 (11%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP + DWR+KGAV PV+ QGSCGSCW+FS +EG N + TGKLV LSEQ+LVDC+
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
GC GG A EY K G +R + YPY K I +
Sbjct: 60 --------SHGCKGGYPPYALEYVAKNGIHLRSK-YPYKAKQGTCRAKQVGGPIVKTSGV 110
Query: 264 FSVVSLDEDQIAANLVKNGPLAVAINAV--YMQTYIGGV-SCPYICSRRLDHGVLLVGYG 320
V +E + N + P++V + + Q Y GG+ P C ++DH V VGYG
Sbjct: 111 GRVQPNNEGNL-LNAIAKQPVSVVVESKGRPFQLYKGGIFEGP--CGTKVDHAVTAVGYG 167
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRG----RNVCGV 362
+G L IKNSWG +WGE GY +I R VCG+
Sbjct: 168 KSGGKGYIL-------IKNSWGTAWGEKGYIRIKRAPGNSPGVCGL 206
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 120 bits (302), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 113/226 (50%), Gaps = 27/226 (11%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP + DWR+KGAV PV+ QGSCGSCW+FS +EG N + TGKLV LSEQ+LVDC+
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
GC GG A EY K G +R + YPY K I +
Sbjct: 60 --------SHGCKGGYPPYALEYVAKNGIHLRSK-YPYKAKQGTCRAKQVGGPIVKTSGV 110
Query: 264 FSVVSLDEDQIAANLVKNGPLAVAINAV--YMQTYIGGV-SCPYICSRRLDHGVLLVGYG 320
V +E + N + P++V + + Q Y GG+ P C +++H V VGYG
Sbjct: 111 GRVQPNNEGNL-LNAIAKQPVSVVVESKGRPFQLYKGGIFEGP--CGTKVEHAVTAVGYG 167
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRG----RNVCGV 362
+G L IKNSWG +WGE GY +I R VCG+
Sbjct: 168 KSGGKGYIL-------IKNSWGTAWGEKGYIRIKRAPGNSPGVCGL 206
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 114/226 (50%), Gaps = 27/226 (11%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
LP DWR KGAV PVK QG C SCW+FST +EG N + TG LV LSEQ+LVDCD +
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQ- 59
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN 263
GCN G +++ +Y + G +R + YPY + C+ ++ N
Sbjct: 60 --------SYGCNRGYQSTSLQYVAQNGIHLRAK-YPYIAKQQ--TCRANQVGGPKVKTN 108
Query: 264 -FSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRRLDHGVLLVGYG 320
V + + N + + P++V + + Q Y GG+ C ++DH V VGYG
Sbjct: 109 GVGRVQSNNEGSLLNAIAHQPVSVVVESAGRDFQNYKGGIF-EGSCGTKVDHAVTAVGYG 167
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR----NVCGV 362
+G L IKNSWG WGENGY +I R VCGV
Sbjct: 168 KSGGKGYIL-------IKNSWGPGWGENGYIRIRRASGNSPGVCGV 206
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 122/235 (51%), Gaps = 35/235 (14%)
Query: 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC 203
+P DWR+KGAV PV++QG CGSCW+FS+ A+EG N + TG+L+SLSEQ+L+DC+
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERR- 59
Query: 204 DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSK-IAASVA 262
GC GG A +Y +G +R+ YPY G R C+ ++K
Sbjct: 60 --------SYGCRGGFPLYALQYVANSGIHLRQY-YPYEGVQR--QCRASQAKGPKVKTD 108
Query: 263 NFSVVSLDEDQIAANLVKNGPLAVAINAV--YMQTYIGGV-SCPYICSRRLDHGVLLVGY 319
V + +Q + P+++ + A Q Y GG+ + P C +DH V VGY
Sbjct: 109 GVGRVPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGP--CGTSIDHAVAAVGY 166
Query: 320 GSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRG----RNVCGV--DSMVST 368
G+ Y +IKNSWG WGE GY +I RG + CGV DS+ T
Sbjct: 167 GN-----------DYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPT 210
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 121/261 (46%), Gaps = 38/261 (14%)
Query: 123 LRRKLRLPKDADQAPILPTNDLPADFDWREK---GAVGPVKDQGSCGSCWSFSTTGALEG 179
LR K D Q IL LP +DWR V PV++Q SCGSC+SF++ G LE
Sbjct: 188 LRPKPAPITDEIQQQIL---SLPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEA 244
Query: 180 ANFLATGKLVS--LSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREE 237
+ T + LS Q++V C GC+GG + G++ E
Sbjct: 245 RIRILTNNSQTPILSPQEVVSCS---------PYAQGCDGGFPYLIAGKYAQDFGVVEEN 295
Query: 238 DYPYTGTDRGHACKFDKSKIAAS---VANFSVVSLDEDQIAANLVKNGPLAVAI------ 288
+PYT TD K + + +S +E + LVK+GP+AVA
Sbjct: 296 CFPYTATDAPCKPKENCLRYYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDF 355
Query: 289 ----NAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGES 344
+ +Y T G+S P+ +H VLLVGYG + YWI+KNSWG
Sbjct: 356 LHYHSGIYHHT---GLSDPFNPFELTNHAVLLVGYGKDPVTGLD-----YWIVKNSWGSQ 407
Query: 345 WGENGYYKICRGRNVCGVDSM 365
WGE+GY++I RG + C ++S+
Sbjct: 408 WGESGYFRIRRGTDECAIESI 428
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 135/304 (44%), Gaps = 43/304 (14%)
Query: 60 FSLFKKKFNKAYASQEEHDHRFTIFKANLRRAARHQKLDPSATHGITQFSDLTPAEFRRT 119
F +KK FNK+YA+ E+ + + N + ++ + + A I SDL+ EF+
Sbjct: 8 FEEYKKAFNKSYATFEDEEAA----RKNFLESVKYVQSNGGA---INHLSDLSLDEFKNR 60
Query: 120 YL-------GLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFS 172
+L L+ + L + + I + PA+ D R+ V P++ QG CGS W+FS
Sbjct: 61 FLMSAEAFEHLKTQFDLNAETNACSI--NGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFS 118
Query: 173 TTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGG 232
A E A + + L+EQ+LVDC + GC+G + EY ++ G
Sbjct: 119 GVAATESAYLAYRDQSLDLAEQELVDC----------ASQHGCHGDTIPRGIEY-IQHNG 167
Query: 233 LMREEDYPYTGTDRGHACKFDKSKIAASVANF-SVVSLDEDQIAANLVKNGPLAVAINAV 291
+++E Y Y R +C+ ++ ++N+ + + ++I L + I +
Sbjct: 168 VVQESYYRYVA--REQSCRRPNAQ-RFGISNYCQIYPPNANKIREALAQTHSAIAVIIGI 224
Query: 292 YMQTYIGGVSCPYICSRRLD-----HGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWG 346
I R H V +VGY +A + YWI++NSW +WG
Sbjct: 225 KDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNA-------QGVDYWIVRNSWDTNWG 277
Query: 347 ENGY 350
+NGY
Sbjct: 278 DNGY 281
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 125/266 (46%), Gaps = 59/266 (22%)
Query: 143 DLPADFDWREK----GAVGPVKDQGSCGSCWSFSTTGALEGANFLATG--KLVSLSEQQL 196
++P+ FD R+K ++ ++DQ CGSCW+F A+ + + +G + V LS L
Sbjct: 2 EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDL 61
Query: 197 VDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAG---GLMRE-----EDYPYTGTDRGH 248
+ C C+ SC GC GG++ A++Y +K G G +E E YP+ +
Sbjct: 62 LSC---CE-----SCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHT 113
Query: 249 ACKFDK--SKIAASV----------------------ANFSVVSLDEDQIAANLVKNGPL 284
K+ SKI + ++++V + DE I ++K GP+
Sbjct: 114 KGKYPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKN-DEKAIQKEIMKYGPV 172
Query: 285 AVAINAVY--MQTYIGGVSCPYICSRRLD-HGVLLVGYGSAGYAPIRLKEKPYWIIKNSW 341
VY Y G+ +I L H + ++G+G AP YW+I NSW
Sbjct: 173 EAGF-TVYEDFLNYKSGIY-KHITGETLGGHAIRIIGWGVENKAP-------YWLIANSW 223
Query: 342 GESWGENGYYKICRGRNVCGVDSMVS 367
E WGENGY++I RGR+ C ++S V+
Sbjct: 224 NEDWGENGYFRIVRGRDECSIESEVT 249
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 103/227 (45%), Gaps = 27/227 (11%)
Query: 143 DLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHE 202
++P++ D R V P++ QG CGSCW+FS A E A + LSEQ+LVDC
Sbjct: 10 NVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDC--- 66
Query: 203 CDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVA 262
+ GC+G + EY ++ G++ E YPY R C+ S+ ++
Sbjct: 67 -------ASQHGCHGDTIPRGIEY-IQQNGVVEERSYPYVA--REQRCRRPNSQ-HYGIS 115
Query: 263 NF-SVVSLDEDQIAANLVKNGPLAVAINAVY----MQTYIGGVSCPYICSRRLD-HGVLL 316
N+ + D QI L + I + Q Y G + + + H V +
Sbjct: 116 NYCQIYPPDVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNYHAVNI 175
Query: 317 VGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVD 363
VGYGS + YWI++NSW +WG++GY G N+ ++
Sbjct: 176 VGYGST-------QGDDYWIVRNSWDTTWGDSGYGYFQAGNNLMMIE 215
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 115/261 (44%), Gaps = 51/261 (19%)
Query: 143 DLPADFDWREKGAVGP----VKDQGSCGSCWSFSTTGALEGANFLAT-GKL-VSLSEQQL 196
+LP FD RE+ + P ++DQGSCGSCW+F A+ + T G++ V +S + L
Sbjct: 6 NLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 65
Query: 197 VDCDHECDPEEPGSCDSGCNGGLMNSAFEY----TLKAGGLMREED--YPYT-------- 242
+ C C + C GCNGG + A+ + L +GG+ PYT
Sbjct: 66 LTC---CGIQ----CGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHV 118
Query: 243 ------GTDRGHACKFDKSKIAASVANFS----------VVSLDEDQIAANLVKNGPLAV 286
T G K +K A ++ VS E +I A + KNGP+
Sbjct: 119 NGARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEG 178
Query: 287 AINAVY-MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESW 345
A TY GV H + ++G+G PYW++ NSW W
Sbjct: 179 AFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIE-------NGVPYWLVANSWNADW 231
Query: 346 GENGYYKICRGRNVCGVDSMV 366
G+NG++KI RG N CG++S +
Sbjct: 232 GDNGFFKILRGENHCGIESEI 252
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 115/277 (41%), Gaps = 57/277 (20%)
Query: 130 PKDADQAPILPTNDLPADFDWREKGAVGP----VKDQGSCGSCWSFSTTGALEGANFLAT 185
PK + LPA FD RE+ P ++DQGSCGSCW+F A+ + T
Sbjct: 50 PKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHT 109
Query: 186 GKLVSL--SEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYT----LKAGGLMR---- 235
VS+ S + L+ C C C GCNGG A+ + L +GGL
Sbjct: 110 NAHVSVEVSAEDLLTC---CG----SMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVG 162
Query: 236 ----------------------EEDYPYTG--TDRGHACKFDKSKIAASVANFSVVSLDE 271
E D P + G++ + + K N VS E
Sbjct: 163 CRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYG--YNSYSVSNSE 220
Query: 272 DQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRL 329
I A + KNGP+ A +VY Y GV H + ++G+G
Sbjct: 221 KDIMAEIYKNGPVEGAF-SVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE------- 272
Query: 330 KEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMV 366
PYW++ NSW WG+NG++KI RG++ CG++S V
Sbjct: 273 NGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEV 309
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 114/260 (43%), Gaps = 51/260 (19%)
Query: 144 LPADFDWREKGAVGP----VKDQGSCGSCWSFSTTGALEGANFLAT-GKL-VSLSEQQLV 197
LP FD RE+ + P ++DQGSCGSCW+F A+ + T G++ V +S + L+
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 198 DCDHECDPEEPGSCDSGCNGGLMNSAFEY----TLKAGGLMREED--YPYT--------- 242
C C + C GCNGG + A+ + L +GG+ PYT
Sbjct: 61 TC---CGIQ----CGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVN 113
Query: 243 -----GTDRGHACKFDKSKIAASVANFS----------VVSLDEDQIAANLVKNGPLAVA 287
T G K +K A ++ VS E +I A + KNGP+ A
Sbjct: 114 GARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGA 173
Query: 288 INAVY-MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWG 346
TY GV H + ++G+G PYW++ NSW WG
Sbjct: 174 FTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIE-------NGVPYWLVANSWNADWG 226
Query: 347 ENGYYKICRGRNVCGVDSMV 366
+NG++KI RG N CG++S +
Sbjct: 227 DNGFFKILRGENHCGIESEI 246
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 118/274 (43%), Gaps = 51/274 (18%)
Query: 130 PKDADQAPILPTNDLPADFDWREKGAVGP----VKDQGSCGSCWSFSTTGALEGANFLAT 185
PK ++ +LP FD RE+ + P ++DQGSCGS W+F A+ + T
Sbjct: 49 PKLPERVGFSEDINLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHT 108
Query: 186 -GKL-VSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYT----LKAGGLMREED- 238
G++ V +S + L+ C C + C GCNGG + A+ + L +GG+
Sbjct: 109 NGRVNVEVSAEDLLTC---CGIQ----CGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIG 161
Query: 239 -YPYT--------------GTDRGHACKFDKSKIAASVANFS----------VVSLDEDQ 273
PYT T G K +K A ++ VS E +
Sbjct: 162 CLPYTIPPCEHHVNGARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKE 221
Query: 274 IAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEK 332
I A + KNGP+ A TY GV H + ++G+G
Sbjct: 222 IMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIE-------NGV 274
Query: 333 PYWIIKNSWGESWGENGYYKICRGRNVCGVDSMV 366
PYW++ NSW WG+NG++KI RG N CG++S +
Sbjct: 275 PYWLVANSWNADWGDNGFFKILRGENHCGIESEI 308
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 112/263 (42%), Gaps = 57/263 (21%)
Query: 144 LPADFDWREKGAVGP----VKDQGSCGSCWSFSTTGALEGANFLATGKLVSL--SEQQLV 197
LPA FD RE+ P ++DQGSCGSCW+F A+ + T VS+ S + L+
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 198 DCDHECDPEEPGSCDSGCNGGLMNSAFEYT----LKAGGLMR------------------ 235
C C C GCNGG A+ + L +GGL
Sbjct: 62 TC---CG----SMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVN 114
Query: 236 --------EEDYPYTG--TDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLA 285
E D P + G++ + + K N VS E I A + KNGP+
Sbjct: 115 GSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYG--YNSYSVSNSEKDIMAEIYKNGPVE 172
Query: 286 VAINAVY--MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGE 343
A +VY Y GV H + ++G+G PYW++ NSW
Sbjct: 173 GAF-SVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE-------NGTPYWLVANSWNT 224
Query: 344 SWGENGYYKICRGRNVCGVDSMV 366
WG+NG++KI RG++ CG++S V
Sbjct: 225 DWGDNGFFKILRGQDHCGIESEV 247
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 112/263 (42%), Gaps = 57/263 (21%)
Query: 144 LPADFDWREKGAVGP----VKDQGSCGSCWSFSTTGALEGANFLATGKLVSL--SEQQLV 197
LPA FD RE+ P ++DQGSCGSCW+F A+ + T VS+ S + L+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 198 DCDHECDPEEPGSCDSGCNGGLMNSAFEYT----LKAGGLMR------------------ 235
C C C GCNGG A+ + L +GGL
Sbjct: 61 TC---CG----SMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVN 113
Query: 236 --------EEDYPYTG--TDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLA 285
E D P + G++ + + K N VS E I A + KNGP+
Sbjct: 114 GSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYG--YNSYSVSNSEKDIMAEIYKNGPVE 171
Query: 286 VAINAVY--MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGE 343
A +VY Y GV H + ++G+G PYW++ NSW
Sbjct: 172 GAF-SVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE-------NGTPYWLVANSWNT 223
Query: 344 SWGENGYYKICRGRNVCGVDSMV 366
WG+NG++KI RG++ CG++S V
Sbjct: 224 DWGDNGFFKILRGQDHCGIESEV 246
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 112/263 (42%), Gaps = 57/263 (21%)
Query: 144 LPADFDWREKGAVGP----VKDQGSCGSCWSFSTTGALEGANFLATGKLVSL--SEQQLV 197
LPA FD RE+ P ++DQGSCGSCW+F A+ + T VS+ S + L+
Sbjct: 3 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 62
Query: 198 DCDHECDPEEPGSCDSGCNGGLMNSAFEYT----LKAGGLMR------------------ 235
C C C GCNGG A+ + L +GGL
Sbjct: 63 TC---CG----SMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVN 115
Query: 236 --------EEDYPYTG--TDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLA 285
E D P + G++ + + K N VS E I A + KNGP+
Sbjct: 116 GSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYG--YNSYSVSNSEKDIMAEIYKNGPVE 173
Query: 286 VAINAVY--MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGE 343
A +VY Y GV H + ++G+G PYW++ NSW
Sbjct: 174 GAF-SVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE-------NGTPYWLVANSWNT 225
Query: 344 SWGENGYYKICRGRNVCGVDSMV 366
WG+NG++KI RG++ CG++S V
Sbjct: 226 DWGDNGFFKILRGQDHCGIESEV 248
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 111/263 (42%), Gaps = 57/263 (21%)
Query: 144 LPADFDWREKGAVGP----VKDQGSCGSCWSFSTTGALEGANFLATGKLVSL--SEQQLV 197
LPA FD RE+ P ++DQGSCGS W+F A+ + T VS+ S + L+
Sbjct: 7 LPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 66
Query: 198 DCDHECDPEEPGSCDSGCNGGLMNSAFEYT----LKAGGLMR------------------ 235
C C C GCNGG A+ + L +GGL
Sbjct: 67 TC---CG----SMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVN 119
Query: 236 --------EEDYPYTG--TDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLA 285
E D P + G++ + + K N VS E I A + KNGP+
Sbjct: 120 GARPPCTGEGDTPKCSKICEPGYSPTYKQDKHYG--YNSYSVSNSEKDIMAEIYKNGPVE 177
Query: 286 VAINAVY--MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGE 343
A +VY Y GV H + ++G+G PYW++ NSW
Sbjct: 178 GAF-SVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE-------NGTPYWLVANSWNT 229
Query: 344 SWGENGYYKICRGRNVCGVDSMV 366
WG+NG++KI RG++ CG++S V
Sbjct: 230 DWGDNGFFKILRGQDHCGIESEV 252
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 49/225 (21%)
Query: 143 DLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHE 202
+ PA+ D R+ V P++ QG CGSCW+FS A E A + + L+EQ+LVDC
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDC--- 65
Query: 203 CDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVA 262
+ GC+G + EY ++ G+++E Y Y R +C+ ++ ++
Sbjct: 66 -------ASQHGCHGDTIPRGIEY-IQHNGVVQESYYRYVA--REQSCRRPNAQ-RFGIS 114
Query: 263 NF-SVVSLDEDQIAANLVK-NGPLAVAINAVYMQTYIGGVSCPYICSRRLD--------- 311
N+ + + ++I L + + +AV I + + R D
Sbjct: 115 NYCQIYPPNVNKIREALAQTHSAIAVIIGIKDLDAF-----------RHYDGRTIIQRDN 163
Query: 312 ------HGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGY 350
H V +VGY +A + YWI++NSW +WG+NGY
Sbjct: 164 GYQPNYHAVNIVGYSNA-------QGVDYWIVRNSWDTNWGDNGY 201
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 49/225 (21%)
Query: 143 DLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHE 202
+ PA+ D R+ V P++ QG CGSCW+FS A E A + + L+EQ+LVDC
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDC--- 65
Query: 203 CDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVA 262
+ GC+G + EY ++ G+++E Y Y R +C+ ++ ++
Sbjct: 66 -------ASQHGCHGDTIPRGIEY-IQHNGVVQESYYRYVA--REQSCRRPNAQ-RFGIS 114
Query: 263 NF-SVVSLDEDQIAANLVK-NGPLAVAINAVYMQTYIGGVSCPYICSRRLD--------- 311
N+ + + ++I L + + +AV I + + R D
Sbjct: 115 NYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAF-----------RHYDGRTIIQRDN 163
Query: 312 ------HGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGY 350
H V +VGY +A + YWI++NSW +WG+NGY
Sbjct: 164 GYQPNYHAVNIVGYSNA-------QGVDYWIVRNSWDTNWGDNGY 201
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 101/225 (44%), Gaps = 49/225 (21%)
Query: 143 DLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHE 202
+ PA+ D R+ V P++ QG CGS W+FS A E A + + L+EQ+LVDC
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDC--- 65
Query: 203 CDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVA 262
+ GC+G + EY ++ G+++E Y Y R +C+ ++ ++
Sbjct: 66 -------ASQHGCHGDTIPRGIEY-IQHNGVVQESYYRYVA--REQSCRRPNAQ-RFGIS 114
Query: 263 NF-SVVSLDEDQIAANLVK-NGPLAVAINAVYMQTYIGGVSCPYICSRRLD--------- 311
N+ + + ++I L + + +AV I + + R D
Sbjct: 115 NYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAF-----------RHYDGRTIIQRDN 163
Query: 312 ------HGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGY 350
H V +VGY +A + YWI++NSW +WG+NGY
Sbjct: 164 GYQPNYHAVNIVGYSNA-------QGVDYWIVRNSWDTNWGDNGY 201
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 107/270 (39%), Gaps = 57/270 (21%)
Query: 126 KLRLPKDADQAPILPTNDLPADFD----WREKGAVGPVKDQGSCGSCWSFSTTGALEGAN 181
K R ++ +AP LP+ FD W + + DQ +CGSCW+ + A+
Sbjct: 60 KRRFTEEEARAP------LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSD-R 112
Query: 182 FLATGKL--VSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDY 239
F G + V +S L+ C +C GCNGG + A+ Y + GL+ +
Sbjct: 113 FCTMGGVQDVHISAGDLLACCSDCG--------DGCNGGDPDRAWAY-FSSTGLVSDYCQ 163
Query: 240 PYTGTDRGHACKFDKSKIAASVANFSVVSLD-----------------------EDQIAA 276
PY H K S NF D ED
Sbjct: 164 PYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMR 223
Query: 277 NLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRRLD-HGVLLVGYGSAGYAPIRLKEKP 333
L GP VA + VY Y GV ++ + L H V LVG+G++ P
Sbjct: 224 ELFFRGPFEVAFD-VYEDFIAYNSGVY-HHVSGQYLGGHAVRLVGWGTS-------NGVP 274
Query: 334 YWIIKNSWGESWGENGYYKICRGRNVCGVD 363
YW I NSW WG +GY+ I RG + CG++
Sbjct: 275 YWKIANSWNTEWGMDGYFLIRRGSSECGIE 304
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 110/270 (40%), Gaps = 57/270 (21%)
Query: 126 KLRLPKDADQAPILPTNDLPADFD----WREKGAVGPVKDQGSCGSCWSFSTTGALEGAN 181
K R ++ +AP LP+ FD W + + DQ +CGSCW+ + A+
Sbjct: 59 KRRFTEEEARAP------LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSD-R 111
Query: 182 FLATGKL--VSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDY 239
F G + V +S L+ C +C GCNGG + A+ Y + GL+ +
Sbjct: 112 FCTMGGVQDVHISAGDLLACCSDCG--------DGCNGGDPDRAWAY-FSSTGLVSDYCQ 162
Query: 240 PYTGTDRGHACK------------FDKSKI-------AASVANF----SVVSLDEDQIAA 276
PY H K FD K V N+ S ED
Sbjct: 163 PYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMR 222
Query: 277 NLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRRLD-HGVLLVGYGSAGYAPIRLKEKP 333
L GP VA + VY Y GV ++ + L H V LVG+G++ P
Sbjct: 223 ELFFRGPFEVAFD-VYEDFIAYNSGVY-HHVSGQYLGGHAVRLVGWGTS-------NGVP 273
Query: 334 YWIIKNSWGESWGENGYYKICRGRNVCGVD 363
YW I NSW WG +GY+ I RG + CG++
Sbjct: 274 YWKIANSWNTEWGMDGYFLIRRGSSECGIE 303
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 110/270 (40%), Gaps = 57/270 (21%)
Query: 126 KLRLPKDADQAPILPTNDLPADFD----WREKGAVGPVKDQGSCGSCWSFSTTGALEGAN 181
K R ++ +AP LP+ FD W + + DQ +CGSCW+ + A+
Sbjct: 82 KRRFTEEEARAP------LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSD-R 134
Query: 182 FLATGKL--VSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDY 239
F G + V +S L+ C +C GCNGG + A+ Y + GL+ +
Sbjct: 135 FCTMGGVQDVHISAGDLLACCSDCG--------DGCNGGDPDRAWAY-FSSTGLVSDYCQ 185
Query: 240 PYTGTDRGHACK------------FDKSKI-------AASVANF----SVVSLDEDQIAA 276
PY H K FD K V N+ S ED
Sbjct: 186 PYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMR 245
Query: 277 NLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRRLD-HGVLLVGYGSAGYAPIRLKEKP 333
L GP VA + VY Y GV ++ + L H V LVG+G++ P
Sbjct: 246 ELFFRGPFEVAFD-VYEDFIAYNSGVY-HHVSGQYLGGHAVRLVGWGTS-------NGVP 296
Query: 334 YWIIKNSWGESWGENGYYKICRGRNVCGVD 363
YW I NSW WG +GY+ I RG + CG++
Sbjct: 297 YWKIANSWNTEWGMDGYFLIRRGSSECGIE 326
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 110/238 (46%), Gaps = 42/238 (17%)
Query: 139 LPTNDLPADFDWREKGAVG---PVKDQ---GSCGSCWSFSTTGAL-EGANFLATGKLVS- 190
L DLP +DWR V ++Q CGSCW+ ++T A+ + N G S
Sbjct: 31 LSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPST 90
Query: 191 -LSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHA 249
LS Q ++DC + GSC+ G + + + A ++ G+ E Y D+
Sbjct: 91 LLSVQNVIDCGNA------GSCEGGNDLSVWDYAHQH-----GIPDETCNNYQAKDQ-EC 138
Query: 250 CKFDKS------KIAASVANFSVVSLDE-------DQIAANLVKNGPLAVAINAV-YMQT 295
KF++ K ++ N+++ + + +++ A + NGP++ I A +
Sbjct: 139 DKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLAN 198
Query: 296 YIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKI 353
Y GG+ Y + ++H V + G+G + YWI++NSWGE WGE G+ +I
Sbjct: 199 YTGGIYAEYQDTTYINHVVSVAGWGIS-------DGTEYWIVRNSWGEPWGERGWLRI 249
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 108/233 (46%), Gaps = 42/233 (18%)
Query: 144 LPADFDWREKGAVG---PVKDQ---GSCGSCWSFSTTGAL-EGANFLATGKLVS--LSEQ 194
LP +DWR V ++Q CGSCW+ ++T A+ + N G S LS Q
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 195 QLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDK 254
++DC + GSC+ G + + + A ++ G+ E Y D+ KF++
Sbjct: 61 NVIDCGN------AGSCEGGNDLSVWDYAHQH-----GIPDETCNNYQAKDQ-ECDKFNQ 108
Query: 255 S------KIAASVANFSVVSLDE-------DQIAANLVKNGPLAVAINAV-YMQTYIGGV 300
K ++ N+++ + + +++ A + NGP++ I A + Y GG+
Sbjct: 109 CGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGI 168
Query: 301 SCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKI 353
Y + ++H V + G+G + YWI++NSWGE WGE G+ +I
Sbjct: 169 YAEYQDTTYINHVVSVAGWGIS-------DGTEYWIVRNSWGEPWGERGWLRI 214
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 102/269 (37%), Gaps = 69/269 (25%)
Query: 144 LPADFDWREKGAVGP----VKDQGSCGSCWSFSTTGALE--------------------- 178
LP FD RE+ P ++DQGSCGSCW+F A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 179 -----------------GA-NFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 220
GA NF LVS L + C P C+ NG
Sbjct: 61 TCCGGECGDGCNGGEPSGAWNFWTKKGLVS---GGLYNSHVGCRPYSIPPCEHHVNGSRP 117
Query: 221 NSAFEYTLKAGGLMREEDY-PYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLV 279
E E Y P D+ C + SVAN +E +I A +
Sbjct: 118 PCTGEGDTPKCSKTCEPGYSPSYKEDKHFGCS------SYSVAN------NEKEIMAEIY 165
Query: 280 KNGPLAVAINAVY--MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWII 337
KNGP+ A +VY Y GV H + ++G+G PYW++
Sbjct: 166 KNGPVEGAF-SVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVE-------NGTPYWLV 217
Query: 338 KNSWGESWGENGYYKICRGRNVCGVDSMV 366
NSW WG+NG++KI RG++ CG++S +
Sbjct: 218 ANSWNTDWGDNGFFKILRGQDHCGIESEI 246
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 102/269 (37%), Gaps = 69/269 (25%)
Query: 144 LPADFDWREKGAVGP----VKDQGSCGSCWSFSTTGALE--------------------- 178
LP FD RE+ P ++DQGSCGSCW+F A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 179 -----------------GA-NFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 220
GA NF LVS L + C P C+ NG
Sbjct: 61 TCCGGECGDGCNGGFPSGAWNFWTKKGLVS---GGLYNSHVGCRPYSIPPCEHHVNGSRP 117
Query: 221 NSAFEYTLKAGGLMREEDY-PYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLV 279
E E Y P D+ C + SVAN +E +I A +
Sbjct: 118 PCTGEGDTPKCSKTCEPGYSPSYKEDKHFGCS------SYSVAN------NEKEIMAEIY 165
Query: 280 KNGPLAVAINAVY--MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWII 337
KNGP+ A +VY Y GV H + ++G+G PYW++
Sbjct: 166 KNGPVEGAF-SVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVE-------NGTPYWLV 217
Query: 338 KNSWGESWGENGYYKICRGRNVCGVDSMV 366
NSW WG+NG++KI RG++ CG++S +
Sbjct: 218 GNSWNTDWGDNGFFKILRGQDHCGIESEI 246
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 69/157 (43%), Gaps = 21/157 (13%)
Query: 144 LPADFDWREKGA---VGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVS--LSEQQLVD 198
LP +DWR V PV++Q SCGSC+SF++ G LE + T + LS Q++V
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 199 CDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIA 258
C GC GG + GL+ E +PYTGTD CK +
Sbjct: 61 CSQYAQ---------GCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDS--PCKMKEDCFR 109
Query: 259 ASVANFSVV-----SLDEDQIAANLVKNGPLAVAINA 290
+ + V +E + LV +GP+AVA
Sbjct: 110 YYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEV 146
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 64.7 bits (156), Expect = 9e-11, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 38/55 (69%), Gaps = 5/55 (9%)
Query: 311 DHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSM 365
+H VLLVGYG+ + + YWI+KNSWG WGENGY++I RG + C ++S+
Sbjct: 10 NHAVLLVGYGTDSASGM-----DYWIVKNSWGTGWGENGYFRIRRGTDECAIESI 59
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 263 NFSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRRLDHGVLLVGYG 320
N VS E I A + KNGP+ A +VY Y GV H + ++G+G
Sbjct: 100 NSYSVSNSEKDIMAEIYKNGPVEGAF-SVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWG 158
Query: 321 SAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMV 366
PYW++ NSW WG+NG++KI RG++ CG++S V
Sbjct: 159 VE-------NGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEV 197
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 88/223 (39%), Gaps = 36/223 (16%)
Query: 159 VKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGG 218
V+DQG+C + W F++ LE + + +S + +C E CD G +
Sbjct: 25 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANC---YKGEHKDRCDEGSSPM 81
Query: 219 LMNSAFEYTLKAGGLMREEDYPYTGTDRGHACK---------FDKSKI------AASVAN 263
E G L E +YPY G C +D KI S+
Sbjct: 82 EFLQIIE---DYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDG 138
Query: 264 FSVVSLDEDQIAANL-----------VKNGPLAVAINAVYMQTY-IGGVSCPYIC-SRRL 310
+ + ++ N+ + G + I A + Y G +C
Sbjct: 139 KGYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNLCGDDTA 198
Query: 311 DHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKI 353
DH V +VGYG+ Y ++K YWI++NSWG WG+ GY+K+
Sbjct: 199 DHAVNIVGYGN--YVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 239
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 88/223 (39%), Gaps = 36/223 (16%)
Query: 159 VKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGG 218
V+DQG+C + W F++ LE + + +S + +C E CD G +
Sbjct: 24 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANC---YKGEHKDRCDEGSSPM 80
Query: 219 LMNSAFEYTLKAGGLMREEDYPYTGTDRGHACK---------FDKSKI------AASVAN 263
E G L E +YPY G C +D KI S+
Sbjct: 81 EFLQIIE---DYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDG 137
Query: 264 FSVVSLDEDQIAANL-----------VKNGPLAVAINAVYMQTY-IGGVSCPYIC-SRRL 310
+ + ++ N+ + G + I A + Y G +C
Sbjct: 138 KGYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVQNLCGDDTA 197
Query: 311 DHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKI 353
DH V +VGYG+ Y ++K YWI++NSWG WG+ GY+K+
Sbjct: 198 DHAVNIVGYGN--YVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 238
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 267 VSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGY 324
V+ +E +I A + KNGP+ A +VY Y GV H + ++G+G
Sbjct: 105 VANNEKEIMAEIYKNGPVEGAF-SVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVE-- 161
Query: 325 APIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMV 366
PYW++ NSW WG+NG++KI RG++ CG++S +
Sbjct: 162 -----NGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEI 198
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 55.5 bits (132), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 60 FSLFKKKFNKAYASQEEHDHRFTIFKANLRRAARHQKLDPSATHGITQFSDLTPAEFRRT 119
FS F+ + K+YA++EE R+ IFK NL H + S + + F DL+ EFRR
Sbjct: 25 FSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMNHFGDLSRDEFRRK 84
Query: 120 YLGLRRKLRL 129
YLG ++ L
Sbjct: 85 YLGFKKSRNL 94
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 334 YWIIKNSWGESWGENGYYKICRG-RNVCGVDSMVS 367
YW++KNSWGE WG GY K+ + RN CG+ S S
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 38
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 42.0 bits (97), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 144 LPADFDWREKGAVGP----VKDQGSCGSCWSFSTTGAL 177
LPA FD RE+ P ++DQGSCGSCW+F A+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 144 LPADFDWREKGAVGP----VKDQGSCGSCWSFSTTGAL 177
LP FD RE+ P ++DQGSCGSCW+F A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 93/252 (36%), Gaps = 63/252 (25%)
Query: 130 PKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALE--------GAN 181
P+ + A + P DL F V DQG GSC + + A++
Sbjct: 49 PEKSVIAALPPKVDLTPPFQ---------VYDQGRIGSCTANALAAAIQFERIHDKQSPE 99
Query: 182 FLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPY 241
F+ + + +E+++ E + DSG ++ + L G+ E+++PY
Sbjct: 100 FIPSRLFIYYNERKI---------EGHVNYDSG---AMIRDGIK-VLHKLGVCPEKEWPY 146
Query: 242 TGTDRGHACKFDKSKIAAS---------------VANFSVVSLDEDQIAANLVKNGPLAV 286
T + AS + +S V+ D D + A L P
Sbjct: 147 GDTPADPRTEEFPPGAPASKKPSDQCYKDAQNYKITEYSRVAQDIDHLKACLAVGSPFVF 206
Query: 287 AINAVYMQTYIGGVSCPYICSRRLD-------HGVLLVGYGSAGYAPIRLKEKPYWIIKN 339
+VY +++G S P H VL VGY E ++ I+N
Sbjct: 207 GF-SVY-NSWVGNNSLPVRIPLPTKNDTLEGGHAVLCVGYDD---------EIRHFRIRN 255
Query: 340 SWGESWGENGYY 351
SWG + GE+GY+
Sbjct: 256 SWGNNVGEDGYF 267
>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte
Antigent-2(Ctla Protein), Crammer At Ph 6.0
Length = 80
Score = 31.2 bits (69), Expect = 0.86, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 63 FKKKFNKAYASQEEHDHRFTIFKANLRRAARH----QKLDPSATHGITQFSDLTPAEF 116
+K KF+K Y ++E+ R I+ + R H +K + + GI +DLTP EF
Sbjct: 13 YKSKFDKNYEAEEDLMRR-RIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTPEEF 69
>pdb|4HG2|A Chain A, The Structure Of A Putative Type Ii Methyltransferase From
Anaeromyxobacter Dehalogenans.
pdb|4HG2|B Chain B, The Structure Of A Putative Type Ii Methyltransferase From
Anaeromyxobacter Dehalogenans
Length = 257
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 62 LFKKKFNKAYASQEEHDHRFTIFKANLRRAARHQKLDPSATHGITQFSDLTPAEFRRTYL 121
L + A A+Q H F A LRR AR + + T+G+T+ A R Y
Sbjct: 95 LPPASVDVAIAAQAXHWFDLDRFWAELRRVARPGAVFAAVTYGLTRVDPEVDAVVDRLYH 154
Query: 122 GL 123
GL
Sbjct: 155 GL 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,681,702
Number of Sequences: 62578
Number of extensions: 500287
Number of successful extensions: 1362
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 936
Number of HSP's gapped (non-prelim): 135
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)