Query 017318
Match_columns 373
No_of_seqs 374 out of 1934
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 07:30:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 4.9E-97 1E-101 682.0 27.0 327 22-372 41-372 (372)
2 PTZ00203 cathepsin L protease; 100.0 2.2E-81 4.8E-86 604.2 35.4 297 56-370 34-339 (348)
3 PTZ00021 falcipain-2; Provisio 100.0 1.4E-76 3.1E-81 586.7 31.4 302 56-370 165-487 (489)
4 PTZ00200 cysteine proteinase; 100.0 6.1E-74 1.3E-78 566.3 31.7 294 56-371 122-445 (448)
5 KOG1543 Cysteine proteinase Ca 100.0 5.9E-71 1.3E-75 528.2 29.9 286 64-368 30-320 (325)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 4.7E-60 1E-64 438.8 22.6 211 144-371 1-242 (243)
7 cd02698 Peptidase_C1A_Cathepsi 100.0 1.5E-58 3.3E-63 427.4 23.4 208 144-371 1-238 (239)
8 cd02620 Peptidase_C1A_Cathepsi 100.0 2.5E-58 5.5E-63 425.1 21.7 207 145-368 1-235 (236)
9 cd02248 Peptidase_C1A Peptidas 100.0 2.3E-57 5.1E-62 411.4 22.8 206 145-368 1-209 (210)
10 PTZ00364 dipeptidyl-peptidase 100.0 1.2E-55 2.7E-60 442.1 23.3 215 142-372 203-460 (548)
11 PTZ00049 cathepsin C-like prot 100.0 4.4E-55 9.6E-60 442.2 24.5 214 141-371 378-676 (693)
12 PF00112 Peptidase_C1: Papain 100.0 8E-55 1.7E-59 396.2 19.7 210 144-369 1-218 (219)
13 smart00645 Pept_C1 Papain fami 100.0 3.5E-51 7.7E-56 360.4 18.1 170 144-368 1-172 (174)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 5.6E-47 1.2E-51 345.3 20.9 198 147-357 1-213 (223)
15 PTZ00462 Serine-repeat antigen 100.0 6E-47 1.3E-51 392.9 22.0 206 156-370 544-780 (1004)
16 KOG1544 Predicted cysteine pro 100.0 6.6E-44 1.4E-48 325.2 6.6 269 91-370 153-459 (470)
17 COG4870 Cysteine protease [Pos 100.0 7.7E-31 1.7E-35 245.6 8.5 210 143-361 98-318 (372)
18 cd00585 Peptidase_C1B Peptidas 99.9 6.2E-24 1.3E-28 209.3 14.5 187 157-356 55-399 (437)
19 PF03051 Peptidase_C1_2: Pepti 99.7 1.6E-16 3.6E-21 156.9 16.3 191 157-356 56-400 (438)
20 PF08246 Inhibitor_I29: Cathep 99.6 4.8E-16 1E-20 111.6 7.1 57 60-116 1-58 (58)
21 smart00848 Inhibitor_I29 Cathe 99.5 7.2E-14 1.6E-18 99.8 5.3 56 60-115 1-57 (57)
22 COG3579 PepC Aminopeptidase C 99.0 4.9E-09 1.1E-13 97.8 11.5 81 269-355 295-401 (444)
23 KOG4128 Bleomycin hydrolases a 97.6 4.2E-05 9.2E-10 71.7 3.8 84 157-241 63-168 (457)
24 PF05543 Peptidase_C47: Stapho 96.8 0.015 3.2E-07 50.4 10.6 121 161-343 18-146 (175)
25 PF13529 Peptidase_C39_2: Pept 96.4 0.026 5.6E-07 46.7 9.1 134 158-341 4-144 (144)
26 PF08127 Propeptide_C1: Peptid 90.6 0.21 4.6E-06 32.7 2.1 34 89-124 4-37 (41)
27 PF09778 Guanylate_cyc_2: Guan 89.6 1.3 2.8E-05 40.0 7.0 54 269-322 111-172 (212)
28 PF14399 Transpep_BrtH: NlpC/p 89.2 1.2 2.5E-05 42.6 7.0 47 271-322 78-124 (317)
29 PF07172 GRP: Glycine rich pro 88.8 0.32 6.8E-06 38.2 2.2 12 1-12 1-12 (95)
30 PF10731 Anophelin: Thrombin i 87.7 0.77 1.7E-05 32.3 3.3 19 1-19 1-19 (65)
31 PF05984 Cytomega_UL20A: Cytom 87.4 0.52 1.1E-05 35.5 2.5 21 1-21 1-21 (100)
32 COG4990 Uncharacterized protei 84.3 2.1 4.7E-05 37.4 5.1 47 270-342 122-168 (195)
33 PF12385 Peptidase_C70: Papain 76.8 38 0.00083 29.1 10.1 40 270-323 97-136 (166)
34 cd02549 Peptidase_C39A A sub-f 68.5 17 0.00036 29.8 6.2 34 274-320 70-103 (141)
35 PF15240 Pro-rich: Proline-ric 51.2 9.7 0.00021 33.4 1.7 14 5-18 2-15 (179)
36 cd00044 CysPc Calpains, domain 50.0 21 0.00045 34.2 4.1 43 310-357 235-303 (315)
37 PF01640 Peptidase_C10: Peptid 37.6 1.7E+02 0.0038 25.7 7.8 51 271-352 140-192 (192)
38 PF15284 PAGK: Phage-encoded v 31.6 27 0.00059 24.8 1.2 22 4-25 5-26 (61)
39 PF08048 RepA1_leader: Tap Rep 29.7 66 0.0014 18.3 2.3 21 1-21 1-21 (25)
40 PF08139 LPAM_1: Prokaryotic m 24.6 81 0.0017 18.3 2.1 15 6-20 10-24 (25)
41 smart00230 CysPc Calpain-like 24.5 1.3E+02 0.0029 28.9 5.0 27 310-343 227-255 (318)
42 TIGR03475 tap_IncFII_lead RepA 24.5 84 0.0018 18.1 2.1 21 1-21 1-21 (26)
43 PRK09810 entericidin A; Provis 21.1 1E+02 0.0022 20.2 2.3 14 1-14 1-14 (41)
44 PRK03100 sec-independent trans 20.8 1.7E+02 0.0037 24.5 4.2 19 51-69 24-42 (136)
45 PF15588 Imm7: Immunity protei 20.6 4.1E+02 0.009 21.3 6.5 34 313-351 17-55 (115)
46 PRK14745 RepA leader peptide T 20.2 98 0.0021 17.7 1.8 21 1-21 1-21 (26)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-97 Score=681.98 Aligned_cols=327 Identities=63% Similarity=1.080 Sum_probs=298.6
Q ss_pred CCcCCCcccceeeeecCCCccccccccccCCccchHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCC-C
Q 017318 22 GTLIDDVDQLIRQVTDGGDEILSHHESTNNDLLGAEHHFSLFKKKFNKAYASQEEHDHRFTIFKANLRRAARHQKLDP-S 100 (373)
Q Consensus 22 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~F~~f~~~~~K~Y~~~eE~~~R~~iF~~Nl~~i~~~n~~~~-s 100 (373)
......++..||+|+...+ +.+..++.+++|..|+.+|+|+|.+.||+.+|+.||+.|+.++++++..++ +
T Consensus 41 ~~v~~~~~~~i~~v~~~~~--------~~~~~l~~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gs 112 (372)
T KOG1542|consen 41 SVVPLGDDLTIRQVVRLQD--------LNPRGLGLEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGS 112 (372)
T ss_pred cccccchhhhhhhhhhhcc--------cCCcccchHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccc
Confidence 4455567888999986321 135567779999999999999999999999999999999999999999998 9
Q ss_pred eeeecccCCCCChHHHhhhhcccccc-cCCCCCCCCCCCCCCCCCCCeeecCcCCCCCccccCCCCcchHHHHHHHHHHH
Q 017318 101 ATHGITQFSDLTPAEFRRTYLGLRRK-LRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEG 179 (373)
Q Consensus 101 ~~~g~n~FaDlt~~Ef~~~~~g~~~~-~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~vtpVkdQg~cGsCwAfA~~~alE~ 179 (373)
.++|+|+|+|||++||++++++.+.. .+.+.+....+..+...||++||||++|+||||||||+||||||||+++++|+
T Consensus 113 A~yGvtqFSDlT~eEFkk~~l~~~~~~~~~~~~~~~~~~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEg 192 (372)
T KOG1542|consen 113 AEYGVTQFSDLTEEEFKKIYLGVKRRGSKLPGDAAEAPIEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEG 192 (372)
T ss_pred cccCccchhhcCHHHHHHHhhccccccccCccccccCcCCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhh
Confidence 99999999999999999999987653 34445556666677889999999999999999999999999999999999999
Q ss_pred HHHHhcCCccccCHhHhhhcCCCCCCCCCCCCCCCCCCCchHHHHHHHHHcCCCCCCCCcCCCCCCCCCCCcCCCCCceE
Q 017318 180 ANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAA 259 (373)
Q Consensus 180 ~~~~~~g~~~~LS~q~l~dc~~~~~~~~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~ 259 (373)
+++|++|++++||||||+||+. +++||+||++.+||+|+++.+|+..|++|||++... ..|.++..+..+
T Consensus 193 a~~i~~g~LvsLSEQeLvDCD~---------~d~gC~GGl~~nA~~~~~~~gGL~~E~dYPY~g~~~-~~C~~~~~~~~v 262 (372)
T KOG1542|consen 193 AWAIATGKLVSLSEQELVDCDS---------CDNGCNGGLMDNAFKYIKKAGGLEKEKDYPYTGKKG-NQCHFDKSKIVV 262 (372)
T ss_pred HHHhhcCcccccchhhhhcccC---------cCCcCCCCChhHHHHHHHHhCCccccccCCccccCC-CccccchhhceE
Confidence 9999999999999999999996 499999999999999999999999999999999982 399999999999
Q ss_pred EEeeeeeeCchHHHHHHHHHhCCCeEEEEEccccccccCceecC--CCCCCC-CCeEEEEEEEeccCCCCCCCCCCCEEE
Q 017318 260 SVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCP--YICSRR-LDHGVLLVGYGSAGYAPIRLKEKPYWI 336 (373)
Q Consensus 260 ~i~~~~~i~~~~~~ik~~l~~~gPV~v~i~~~~f~~y~~Gi~~~--~~c~~~-~~HaV~iVGyg~~~~~~~~~~g~~ywi 336 (373)
.|.+|..++.||++|.++|+++|||+|+|++..||+|.+||++| ..|++. ++|||+|||||.++ -.++|||
T Consensus 263 ~I~~f~~l~~nE~~ia~wLv~~GPi~vgiNa~~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g------~~~PYWI 336 (372)
T KOG1542|consen 263 SIKDFSMLSNNEDQIAAWLVTFGPLSVGINAKPMQFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSG------YEKPYWI 336 (372)
T ss_pred EEeccEecCCCHHHHHHHHHhcCCeEEEEchHHHHHhcccccCCCcccCCccccCceEEEEeecCCC------CCCceEE
Confidence 99999999999999999999999999999988899999999998 889988 99999999999983 2799999
Q ss_pred EEcCCCCCCCCCcEEEEEcCCCeecccCceeeEEec
Q 017318 337 IKNSWGESWGENGYYKICRGRNVCGVDSMVSTVAAA 372 (373)
Q Consensus 337 ikNSWG~~WGe~GY~~i~r~~n~CGi~~~~~~~~~~ 372 (373)
||||||++|||+|||||.||.|.|||++|+++++++
T Consensus 337 VKNSWG~~WGE~GY~~l~RG~N~CGi~~mvss~~v~ 372 (372)
T KOG1542|consen 337 VKNSWGTSWGEKGYYKLCRGSNACGIADMVSSAAVN 372 (372)
T ss_pred EECCccccccccceEEEeccccccccccchhhhhcC
Confidence 999999999999999999999999999999988763
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=2.2e-81 Score=604.22 Aligned_cols=297 Identities=42% Similarity=0.766 Sum_probs=252.3
Q ss_pred hHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeecccCCCCChHHHhhhhcccccccC-CCCCC-
Q 017318 56 AEHHFSLFKKKFNKAYASQEEHDHRFTIFKANLRRAARHQKLDPSATHGITQFSDLTPAEFRRTYLGLRRKLR-LPKDA- 133 (373)
Q Consensus 56 ~~~~F~~f~~~~~K~Y~~~eE~~~R~~iF~~Nl~~i~~~n~~~~s~~~g~n~FaDlt~~Ef~~~~~g~~~~~~-~~~~~- 133 (373)
.+..|++|+++|+|.|.+.+|+.+|+.||++|+++|++||+.+.+|++|+|+|+|||++||.+.+++...... .....
T Consensus 34 ~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~~~~~~~~ 113 (348)
T PTZ00203 34 AAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARNPHARFGITKFFDLSEAEFAARYLNGAAYFAAAKQHAG 113 (348)
T ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccccccCCHHHHHHHhcCCCccccccccccc
Confidence 4678999999999999998899999999999999999999888899999999999999999987764211100 00000
Q ss_pred C-CCCC-CCCCCCCCeeecCcCCCCCccccCCCCcchHHHHHHHHHHHHHHHhcCCccccCHhHhhhcCCCCCCCCCCCC
Q 017318 134 D-QAPI-LPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSC 211 (373)
Q Consensus 134 ~-~~~~-~~~~~lP~~~Dwr~~g~vtpVkdQg~cGsCwAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~~~~~~ 211 (373)
. ..+. ....+||++||||++|+|+||||||.||||||||+++++|+++++++++.+.||+|||+||+..
T Consensus 114 ~~~~~~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~~--------- 184 (348)
T PTZ00203 114 QHYRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDHV--------- 184 (348)
T ss_pred ccccccccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccCC---------
Confidence 0 0000 1123699999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCCCCchHHHHHHHHHc--CCCCCCCCcCCCCCCC-CCCCcCCCC-CceEEEeeeeeeCchHHHHHHHHHhCCCeEEE
Q 017318 212 DSGCNGGLMNSAFEYTLKA--GGLMREEDYPYTGTDR-GHACKFDKS-KIAASVANFSVVSLDEDQIAANLVKNGPLAVA 287 (373)
Q Consensus 212 ~~gC~GG~~~~a~~~~~~~--~Gi~~e~~yPY~~~~~-~~~C~~~~~-~~~~~i~~~~~i~~~~~~ik~~l~~~gPV~v~ 287 (373)
+.||+||++..||+|+.++ +|+++|++|||++.+. ...|+.... ...+++.+|..+..+++.|+.+|.++|||+++
T Consensus 185 ~~GC~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~~e~~~~~~l~~~GPv~v~ 264 (348)
T PTZ00203 185 DNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMESSERVMAAWLAKNGPISIA 264 (348)
T ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCcCHHHHHHHHHhCCCEEEE
Confidence 6799999999999999864 6799999999998751 126875432 23467888888877889999999999999999
Q ss_pred EEccccccccCceecCCCCCCC-CCeEEEEEEEeccCCCCCCCCCCCEEEEEcCCCCCCCCCcEEEEEcCCCeecccCce
Q 017318 288 INAVYMQTYIGGVSCPYICSRR-LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMV 366 (373)
Q Consensus 288 i~~~~f~~y~~Gi~~~~~c~~~-~~HaV~iVGyg~~~~~~~~~~g~~ywiikNSWG~~WGe~GY~~i~r~~n~CGi~~~~ 366 (373)
|++..|++|++|||.. |... ++|||+|||||.+ +|++|||||||||++|||+|||||.||.|+|||++++
T Consensus 265 i~a~~f~~Y~~GIy~~--c~~~~~nHaVliVGYG~~-------~g~~YWiikNSWG~~WGe~GY~ri~rg~n~Cgi~~~~ 335 (348)
T PTZ00203 265 VDASSFMSYHSGVLTS--CIGEQLNHGVLLVGYNMT-------GEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYP 335 (348)
T ss_pred EEhhhhcCccCceeec--cCCCCCCeEEEEEEEecC-------CCceEEEEEcCCCCCcCcCceEEEEcCCCcccccceE
Confidence 9987799999999963 7654 8999999999987 6889999999999999999999999999999999988
Q ss_pred eeEE
Q 017318 367 STVA 370 (373)
Q Consensus 367 ~~~~ 370 (373)
..+.
T Consensus 336 ~~~~ 339 (348)
T PTZ00203 336 VSVH 339 (348)
T ss_pred EEEe
Confidence 8763
No 3
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=1.4e-76 Score=586.70 Aligned_cols=302 Identities=35% Similarity=0.685 Sum_probs=253.0
Q ss_pred hHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHhcCC-CCCeeeecccCCCCChHHHhhhhcccccc-cCC----
Q 017318 56 AEHHFSLFKKKFNKAYASQEEHDHRFTIFKANLRRAARHQKL-DPSATHGITQFSDLTPAEFRRTYLGLRRK-LRL---- 129 (373)
Q Consensus 56 ~~~~F~~f~~~~~K~Y~~~eE~~~R~~iF~~Nl~~i~~~n~~-~~s~~~g~n~FaDlt~~Ef~~~~~g~~~~-~~~---- 129 (373)
....|++|+.+|+|+|.+.+|+.+|+.||++|+++|++||+. +.+|++|+|+|+|||++||++++++.... ...
T Consensus 165 ~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~~~~~~~~~ 244 (489)
T PTZ00021 165 NVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLKSFDFKSNGKK 244 (489)
T ss_pred HHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhcccccccccccccc
Confidence 346799999999999999999999999999999999999975 47999999999999999999888775421 000
Q ss_pred -CCCCCCC---C-CCCC--CCCCCeeecCcCCCCCccccCCCCcchHHHHHHHHHHHHHHHhcCCccccCHhHhhhcCCC
Q 017318 130 -PKDADQA---P-ILPT--NDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHE 202 (373)
Q Consensus 130 -~~~~~~~---~-~~~~--~~lP~~~Dwr~~g~vtpVkdQg~cGsCwAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~ 202 (373)
+...... . ..+. ..+|.+||||+.|.|+||||||.||||||||+++++|++++|++++.+.||+|||+||+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqLVDCs~~ 324 (489)
T PTZ00021 245 SPRVINYDDVIKKYKPKDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDCSFK 324 (489)
T ss_pred ccccccccccccccccccccCCccccccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHHhhhccC
Confidence 0000000 0 0011 1249999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCCCCCCCCCCCCCchHHHHHHHHHcCCCCCCCCcCCCCCCCCCCCcCCCCCceEEEeeeeeeCchHHHHHHHHHhCC
Q 017318 203 CDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNG 282 (373)
Q Consensus 203 ~~~~~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~i~~~~~i~~~~~~ik~~l~~~g 282 (373)
+.||+||++..||+|+.+.+|+++|++|||++... +.|........+++.+|..++ +++|+++|..+|
T Consensus 325 ---------n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~-~~C~~~~~~~~~~i~~y~~i~--~~~lk~al~~~G 392 (489)
T PTZ00021 325 ---------NNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTP-ELCNIDRCKEKYKIKSYVSIP--EDKFKEAIRFLG 392 (489)
T ss_pred ---------CCCCCCcchHhhhhhhhhccccCcccccCccCCCC-CccccccccccceeeeEEEec--HHHHHHHHHhcC
Confidence 78999999999999998888999999999998632 689876666668888988876 578999999999
Q ss_pred CeEEEEEcc-ccccccCceecCCCCCCCCCeEEEEEEEeccCC-CCC--CCCCCCEEEEEcCCCCCCCCCcEEEEEcCC-
Q 017318 283 PLAVAINAV-YMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGY-API--RLKEKPYWIIKNSWGESWGENGYYKICRGR- 357 (373)
Q Consensus 283 PV~v~i~~~-~f~~y~~Gi~~~~~c~~~~~HaV~iVGyg~~~~-~~~--~~~g~~ywiikNSWG~~WGe~GY~~i~r~~- 357 (373)
||+|+|++. .|++|++|||.+ .|...++|||+|||||++.. ... ...+.+|||||||||++|||+|||||+|+.
T Consensus 393 PVsv~i~a~~~f~~YkgGIy~~-~C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~ 471 (489)
T PTZ00021 393 PISVSIAVSDDFAFYKGGIFDG-ECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDEN 471 (489)
T ss_pred CeEEEEEeecccccCCCCcCCC-CCCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCC
Confidence 999999986 499999999976 69877999999999997521 100 112468999999999999999999999996
Q ss_pred ---CeecccCceeeEE
Q 017318 358 ---NVCGVDSMVSTVA 370 (373)
Q Consensus 358 ---n~CGi~~~~~~~~ 370 (373)
|+|||.+.++++.
T Consensus 472 g~~n~CGI~t~a~yP~ 487 (489)
T PTZ00021 472 GLMKTCSLGTEAYVPL 487 (489)
T ss_pred CCCCCCCCcccceeEe
Confidence 5999999988764
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=6.1e-74 Score=566.29 Aligned_cols=294 Identities=36% Similarity=0.648 Sum_probs=244.3
Q ss_pred hHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeecccCCCCChHHHhhhhcccccccCC----CC
Q 017318 56 AEHHFSLFKKKFNKAYASQEEHDHRFTIFKANLRRAARHQKLDPSATHGITQFSDLTPAEFRRTYLGLRRKLRL----PK 131 (373)
Q Consensus 56 ~~~~F~~f~~~~~K~Y~~~eE~~~R~~iF~~Nl~~i~~~n~~~~s~~~g~n~FaDlt~~Ef~~~~~g~~~~~~~----~~ 131 (373)
...+|++|+++|+|.|.+.+|+.+|+.+|++|++.|++||. +.+|++|+|+|+|||++||.+.+++...+... +.
T Consensus 122 ~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~-~~~y~lgiN~FsDlT~eEF~~~~~~~~~~~~~~~~~~~ 200 (448)
T PTZ00200 122 VYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKG-DEPYSKEINKFSDLTEEEFRKLFPVIKVPPKSNSTSHN 200 (448)
T ss_pred HHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcC-cCCeEEeccccccCCHHHHHHHhccCCCcccccccccc
Confidence 34689999999999999999999999999999999999996 56899999999999999999887764321100 00
Q ss_pred ---------CCCCCCCC------------CCCCCCCeeecCcCCCCCccccCC-CCcchHHHHHHHHHHHHHHHhcCCcc
Q 017318 132 ---------DADQAPIL------------PTNDLPADFDWREKGAVGPVKDQG-SCGSCWSFSTTGALEGANFLATGKLV 189 (373)
Q Consensus 132 ---------~~~~~~~~------------~~~~lP~~~Dwr~~g~vtpVkdQg-~cGsCwAfA~~~alE~~~~~~~g~~~ 189 (373)
.......+ +...+|++||||+.|.|+|||||| .||||||||+++++|+++++++++.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~~~~~~ 280 (448)
T PTZ00200 201 NDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYRDKSV 280 (448)
T ss_pred cccccccccccccccccccccccccccccccccCCCCccCCCCCCCCCcccCCCccchHHHHhHHHHHHHHHHHhcCCCe
Confidence 00000000 012369999999999999999999 99999999999999999999999999
Q ss_pred ccCHhHhhhcCCCCCCCCCCCCCCCCCCCchHHHHHHHHHcCCCCCCCCcCCCCCCCCCCCcCCCCCceEEEeeeeeeCc
Q 017318 190 SLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL 269 (373)
Q Consensus 190 ~LS~q~l~dc~~~~~~~~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~i~~~~~i~~ 269 (373)
.||+|||+||+.. +.||+||++..|++|+.+. |+++|++|||++.. +.|...... .+.+.+|..++
T Consensus 281 ~LSeQqLvDC~~~---------~~GC~GG~~~~A~~yi~~~-Gi~~e~~YPY~~~~--~~C~~~~~~-~~~i~~y~~~~- 346 (448)
T PTZ00200 281 DLSEQELVNCDTK---------SQGCSGGYPDTALEYVKNK-GLSSSSDVPYLAKD--GKCVVSSTK-KVYIDSYLVAK- 346 (448)
T ss_pred ecCHHHHhhccCc---------cCCCCCCcHHHHHHHHhhc-CccccccCCCCCCC--CCCcCCCCC-eeEecceEecC-
Confidence 9999999999864 7899999999999999776 99999999999987 899865433 45677887654
Q ss_pred hHHHHHHHHHhCCCeEEEEEccc-cccccCceecCCCCCCCCCeEEEEEEEeccCCCCCCCCCCCEEEEEcCCCCCCCCC
Q 017318 270 DEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGEN 348 (373)
Q Consensus 270 ~~~~ik~~l~~~gPV~v~i~~~~-f~~y~~Gi~~~~~c~~~~~HaV~iVGyg~~~~~~~~~~g~~ywiikNSWG~~WGe~ 348 (373)
+.+.+++++ .+|||+|+|++.. |++|++|||.+ .|...++|||+|||||.+. .+|.+|||||||||++|||+
T Consensus 347 ~~~~l~~~l-~~GPV~v~i~~~~~f~~Yk~GIy~~-~C~~~~nHaV~lVGyG~d~-----~~g~~YWIIkNSWG~~WGe~ 419 (448)
T PTZ00200 347 GKDVLNKSL-VISPTVVYIAVSRELLKYKSGVYNG-ECGKSLNHAVLLVGEGYDE-----KTKKRYWIIKNSWGTDWGEN 419 (448)
T ss_pred HHHHHHHHH-hcCCEEEEeecccccccCCCCcccc-ccCCCCcEEEEEEEecccC-----CCCCceEEEEcCCCCCcccC
Confidence 445555554 6899999999864 99999999975 5877799999999999531 15789999999999999999
Q ss_pred cEEEEEcC---CCeecccCceeeEEe
Q 017318 349 GYYKICRG---RNVCGVDSMVSTVAA 371 (373)
Q Consensus 349 GY~~i~r~---~n~CGi~~~~~~~~~ 371 (373)
|||||+|+ .|.|||+++++.+..
T Consensus 420 GY~ri~r~~~g~n~CGI~~~~~~P~~ 445 (448)
T PTZ00200 420 GYMRLERTNEGTDKCGILTVGLTPVF 445 (448)
T ss_pred eeEEEEeCCCCCCcCCccccceeeEE
Confidence 99999996 589999999887653
No 5
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-71 Score=528.23 Aligned_cols=286 Identities=47% Similarity=0.816 Sum_probs=252.2
Q ss_pred HHHhCcccCCHHHHHHHHHHHHHHHHHHHHhcCC-CCCeeeecccCCCCChHHHhhhhcccccccCCCCCCCCCCCCCCC
Q 017318 64 KKKFNKAYASQEEHDHRFTIFKANLRRAARHQKL-DPSATHGITQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTN 142 (373)
Q Consensus 64 ~~~~~K~Y~~~eE~~~R~~iF~~Nl~~i~~~n~~-~~s~~~g~n~FaDlt~~Ef~~~~~g~~~~~~~~~~~~~~~~~~~~ 142 (373)
+.+|.+.|.+..|...|+.+|.+|++.|..||.. ..+|++++|+|+|+|.+||++.+.+++.+.. ............
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~--~~~~~~~~~~~~ 107 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEI--KRDKFTEKLDGD 107 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHHHHhhccccCccc--cccccccccchh
Confidence 6777777777788999999999999999999987 7899999999999999999998877654321 111111122345
Q ss_pred CCCCeeecCcCC-CCCccccCCCCcchHHHHHHHHHHHHHHHhcC-CccccCHhHhhhcCCCCCCCCCCCCCCCCCCCch
Q 017318 143 DLPADFDWREKG-AVGPVKDQGSCGSCWSFSTTGALEGANFLATG-KLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLM 220 (373)
Q Consensus 143 ~lP~~~Dwr~~g-~vtpVkdQg~cGsCwAfA~~~alE~~~~~~~g-~~~~LS~q~l~dc~~~~~~~~~~~~~~gC~GG~~ 220 (373)
++|++||||++| .++||||||.||||||||++++||++++|++| .++.||+|||+||+.. ++.||+||.+
T Consensus 108 ~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~--------~~~GC~GG~~ 179 (325)
T KOG1543|consen 108 DLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGE--------CGDGCNGGEP 179 (325)
T ss_pred hCCCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCC--------CCCCcCCCCH
Confidence 899999999997 45569999999999999999999999999999 8999999999999984 4789999999
Q ss_pred HHHHHHHHHcCCCCCCCCcCCCCCCCCCCCcCCCCCceEEEeeeeeeCchHHHHHHHHHhCCCeEEEEEccc-cccccCc
Q 017318 221 NSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVY-MQTYIGG 299 (373)
Q Consensus 221 ~~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~i~~~~~i~~~~~~ik~~l~~~gPV~v~i~~~~-f~~y~~G 299 (373)
..|++|+.+++++..+++|||.+.+ +.|+.+.....+.+.++..++.++++|+.+|+.+|||+|+|++.. |+.|++|
T Consensus 180 ~~A~~yi~~~G~~t~~~~Ypy~~~~--~~C~~~~~~~~~~~~~~~~~~~~e~~i~~~v~~~GPv~v~~~a~~~F~~Y~~G 257 (325)
T KOG1543|consen 180 KNAFKYIKKNGGVTECENYPYIGKD--GTCKSNKKDKTVTIKGFYNVPANEEAIAEAVAKNGPVSVAIDAYEDFSLYKGG 257 (325)
T ss_pred HHHHHHHHHhCCCCCCcCCCCcCCC--CCccCCCccceeEeeeeeecCcCHHHHHHHHHhcCCeEEEEeehhhhhhccCc
Confidence 9999999999555559999999998 899998876677788888888889999999999999999999887 9999999
Q ss_pred eecCCCCCCC-CCeEEEEEEEeccCCCCCCCCCCCEEEEEcCCCCCCCCCcEEEEEcCCCeecccCceee
Q 017318 300 VSCPYICSRR-LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVST 368 (373)
Q Consensus 300 i~~~~~c~~~-~~HaV~iVGyg~~~~~~~~~~g~~ywiikNSWG~~WGe~GY~~i~r~~n~CGi~~~~~~ 368 (373)
||.++.|... ++|||+|||||.. ++.+|||||||||++|||+|||||.|++|.|+|++.+++
T Consensus 258 Vy~~~~~~~~~~~Hav~iVGyG~~-------~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~~~I~~~~~~ 320 (325)
T KOG1543|consen 258 VYAEEKGDDKEGDHAVLIVGYGTG-------DGVDYWIVKNSWGTDWGEKGYFRIARGVNKCGIASEASY 320 (325)
T ss_pred eEeCCCCCCCCCCceEEEEEEcCC-------CCceeEEEEcCCCCCcccCceEEEecCCCchhhhccccc
Confidence 9999988885 9999999999983 789999999999999999999999999999999998876
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=4.7e-60 Score=438.80 Aligned_cols=211 Identities=36% Similarity=0.729 Sum_probs=183.1
Q ss_pred CCCeeecCcCC----CCCccccCCCCcchHHHHHHHHHHHHHHHhcCC------ccccCHhHhhhcCCCCCCCCCCCCCC
Q 017318 144 LPADFDWREKG----AVGPVKDQGSCGSCWSFSTTGALEGANFLATGK------LVSLSEQQLVDCDHECDPEEPGSCDS 213 (373)
Q Consensus 144 lP~~~Dwr~~g----~vtpVkdQg~cGsCwAfA~~~alE~~~~~~~g~------~~~LS~q~l~dc~~~~~~~~~~~~~~ 213 (373)
||++||||+.+ +|+||||||.||||||||++++||+++++++++ .+.||+|||+||+.. +.
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~---------~~ 71 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQY---------SQ 71 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcCC---------CC
Confidence 79999999998 999999999999999999999999999998876 689999999999864 67
Q ss_pred CCCCCchHHHHHHHHHcCCCCCCCCcCCCC-CCCCCCCcCCC-CCceEEEeeeeee-----CchHHHHHHHHHhCCCeEE
Q 017318 214 GCNGGLMNSAFEYTLKAGGLMREEDYPYTG-TDRGHACKFDK-SKIAASVANFSVV-----SLDEDQIAANLVKNGPLAV 286 (373)
Q Consensus 214 gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~-~~~~~~C~~~~-~~~~~~i~~~~~i-----~~~~~~ik~~l~~~gPV~v 286 (373)
||+||++..+++|+.+. |+++|++|||++ .. +.|+... ....+.+..|..+ ..++++||++|+++|||++
T Consensus 72 GC~GG~~~~a~~~~~~~-Gi~~e~~yPY~~~~~--~~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v 148 (243)
T cd02621 72 GCDGGFPFLVGKFAEDF-GIVTEDYFPYTADDD--RPCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVV 148 (243)
T ss_pred CCCCCCHHHHHHHHHhc-CcCCCceeCCCCCCC--CCCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEE
Confidence 99999999999999877 899999999998 55 7898654 3334445555444 2378999999999999999
Q ss_pred EEEccc-cccccCceecCCC----CCC---------CCCeEEEEEEEeccCCCCCCCCCCCEEEEEcCCCCCCCCCcEEE
Q 017318 287 AINAVY-MQTYIGGVSCPYI----CSR---------RLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYK 352 (373)
Q Consensus 287 ~i~~~~-f~~y~~Gi~~~~~----c~~---------~~~HaV~iVGyg~~~~~~~~~~g~~ywiikNSWG~~WGe~GY~~ 352 (373)
+|++.. |++|++|||.... |.. .++|||+|||||++. .++++|||||||||++|||+||||
T Consensus 149 ~~~~~~~F~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~-----~~g~~YWiirNSWG~~WGe~Gy~~ 223 (243)
T cd02621 149 AFEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDE-----IKGEKYWIVKNSWGSSWGEKGYFK 223 (243)
T ss_pred EEEecccccccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccC-----CCCCcEEEEEcCCCCCCCcCCeEE
Confidence 999864 9999999998764 643 379999999999872 137899999999999999999999
Q ss_pred EEcCCCeecccCceeeEEe
Q 017318 353 ICRGRNVCGVDSMVSTVAA 371 (373)
Q Consensus 353 i~r~~n~CGi~~~~~~~~~ 371 (373)
|+|+.|.|||++++.++.+
T Consensus 224 i~~~~~~cgi~~~~~~~~~ 242 (243)
T cd02621 224 IRRGTNECGIESQAVFAYP 242 (243)
T ss_pred EecCCcccCcccceEeecc
Confidence 9999999999999988765
No 7
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=1.5e-58 Score=427.40 Aligned_cols=208 Identities=32% Similarity=0.645 Sum_probs=181.4
Q ss_pred CCCeeecCcCC---CCCccccCC---CCcchHHHHHHHHHHHHHHHhcC---CccccCHhHhhhcCCCCCCCCCCCCCCC
Q 017318 144 LPADFDWREKG---AVGPVKDQG---SCGSCWSFSTTGALEGANFLATG---KLVSLSEQQLVDCDHECDPEEPGSCDSG 214 (373)
Q Consensus 144 lP~~~Dwr~~g---~vtpVkdQg---~cGsCwAfA~~~alE~~~~~~~g---~~~~LS~q~l~dc~~~~~~~~~~~~~~g 214 (373)
||++||||+++ +|+|||||| .||||||||++++||+++.++++ ..+.||+|||+||+. +.|
T Consensus 1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~----------~~g 70 (239)
T cd02698 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG----------GGS 70 (239)
T ss_pred CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC----------CCC
Confidence 79999999988 999999998 89999999999999999999865 357899999999985 569
Q ss_pred CCCCchHHHHHHHHHcCCCCCCCCcCCCCCCCCCCCcCC---------------CCCceEEEeeeeeeCchHHHHHHHHH
Q 017318 215 CNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFD---------------KSKIAASVANFSVVSLDEDQIAANLV 279 (373)
Q Consensus 215 C~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~---------------~~~~~~~i~~~~~i~~~~~~ik~~l~ 279 (373)
|+||++..+++|+.+. |+++|++|||...+ +.|... +....++++.|..+. ++++||++|+
T Consensus 71 C~GG~~~~a~~~~~~~-Gl~~e~~yPY~~~~--~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~-~~~~i~~~l~ 146 (239)
T cd02698 71 CHGGDPGGVYEYAHKH-GIPDETCNPYQAKD--GECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS-GRDKMMAEIY 146 (239)
T ss_pred ccCcCHHHHHHHHHHc-CcCCCCeeCCcCCC--CCCcCCCCCCCcccCcccccccccceEEeeeceecC-CHHHHHHHHH
Confidence 9999999999999886 99999999998865 555421 112345677776664 5788999999
Q ss_pred hCCCeEEEEEccc-cccccCceecCCCCCCCCCeEEEEEEEeccCCCCCCCCCCCEEEEEcCCCCCCCCCcEEEEEcCC-
Q 017318 280 KNGPLAVAINAVY-MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR- 357 (373)
Q Consensus 280 ~~gPV~v~i~~~~-f~~y~~Gi~~~~~c~~~~~HaV~iVGyg~~~~~~~~~~g~~ywiikNSWG~~WGe~GY~~i~r~~- 357 (373)
++|||+++|.+.. |+.|++|||....|...++|||+|||||++. ++++|||||||||++|||+|||||+|+.
T Consensus 147 ~~GPV~v~i~~~~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~------~g~~YWiikNSWG~~WGe~Gy~~i~rg~~ 220 (239)
T cd02698 147 ARGPISCGIMATEALENYTGGVYKEYVQDPLINHIISVAGWGVDE------NGVEYWIVRNSWGEPWGERGWFRIVTSSY 220 (239)
T ss_pred HcCCEEEEEEecccccccCCeEEccCCCCCcCCeEEEEEEEEecC------CCCEEEEEEcCCCcccCcCceEEEEccCC
Confidence 9999999999875 9999999998877776799999999999872 3889999999999999999999999999
Q ss_pred ----CeecccCceeeEEe
Q 017318 358 ----NVCGVDSMVSTVAA 371 (373)
Q Consensus 358 ----n~CGi~~~~~~~~~ 371 (373)
|+|||++.+.+.-+
T Consensus 221 ~~~~~~~~i~~~~~~~~~ 238 (239)
T cd02698 221 KGARYNLAIEEDCAWADP 238 (239)
T ss_pred cccccccccccceEEEee
Confidence 99999999887654
No 8
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=2.5e-58 Score=425.11 Aligned_cols=207 Identities=36% Similarity=0.713 Sum_probs=175.2
Q ss_pred CCeeecCcC--CCC--CccccCCCCcchHHHHHHHHHHHHHHHhcC--CccccCHhHhhhcCCCCCCCCCCCCCCCCCCC
Q 017318 145 PADFDWREK--GAV--GPVKDQGSCGSCWSFSTTGALEGANFLATG--KLVSLSEQQLVDCDHECDPEEPGSCDSGCNGG 218 (373)
Q Consensus 145 P~~~Dwr~~--g~v--tpVkdQg~cGsCwAfA~~~alE~~~~~~~g--~~~~LS~q~l~dc~~~~~~~~~~~~~~gC~GG 218 (373)
|++||||++ +++ +||+|||.||||||||++++||+++.++++ +.+.||+|||+||+.. .+.||+||
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~--------~~~gC~GG 72 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSG--------CGDGCNGG 72 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCC--------CCCCCCCC
Confidence 889999997 454 599999999999999999999999999887 7789999999999863 36799999
Q ss_pred chHHHHHHHHHcCCCCCCCCcCCCCCCCC----------------CCCcCCCC----CceEEEeeeeeeCchHHHHHHHH
Q 017318 219 LMNSAFEYTLKAGGLMREEDYPYTGTDRG----------------HACKFDKS----KIAASVANFSVVSLDEDQIAANL 278 (373)
Q Consensus 219 ~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~----------------~~C~~~~~----~~~~~i~~~~~i~~~~~~ik~~l 278 (373)
++..|++|+.+. |+++|++|||.+.+.. ..|..... ...+++..+..+..++++||++|
T Consensus 73 ~~~~a~~~i~~~-G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l 151 (236)
T cd02620 73 YPDAAWKYLTTT-GVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVPSDETDIMKEI 151 (236)
T ss_pred CHHHHHHHHHhc-CCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeCCHHHHHHHHH
Confidence 999999999887 9999999999876521 12442221 12244555555555789999999
Q ss_pred HhCCCeEEEEEccc-cccccCceecCCCCCCC-CCeEEEEEEEeccCCCCCCCCCCCEEEEEcCCCCCCCCCcEEEEEcC
Q 017318 279 VKNGPLAVAINAVY-MQTYIGGVSCPYICSRR-LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRG 356 (373)
Q Consensus 279 ~~~gPV~v~i~~~~-f~~y~~Gi~~~~~c~~~-~~HaV~iVGyg~~~~~~~~~~g~~ywiikNSWG~~WGe~GY~~i~r~ 356 (373)
+++|||+++|++.. |+.|++|||... |... ++|||+|||||++ ++++|||||||||++|||+|||||+|+
T Consensus 152 ~~~GPv~v~i~~~~~f~~Y~~Giy~~~-~~~~~~~HaV~iVGyg~~-------~g~~YWivrNSWG~~WGe~Gy~ri~~~ 223 (236)
T cd02620 152 MTNGPVQAAFTVYEDFLYYKSGVYQHT-SGKQLGGHAVKIIGWGVE-------NGVPYWLAANSWGTDWGENGYFRILRG 223 (236)
T ss_pred HHCCCeEEEEEechhhhhcCCcEEeec-CCCCcCCeEEEEEEEecc-------CCeeEEEEEeCCCCCCCCCcEEEEEcc
Confidence 99999999999854 999999999754 4444 7999999999987 688999999999999999999999999
Q ss_pred CCeecccCceee
Q 017318 357 RNVCGVDSMVST 368 (373)
Q Consensus 357 ~n~CGi~~~~~~ 368 (373)
.|+|||++.+.+
T Consensus 224 ~~~cgi~~~~~~ 235 (236)
T cd02620 224 SNECGIESEVVA 235 (236)
T ss_pred Ccccccccceec
Confidence 999999998864
No 9
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=2.3e-57 Score=411.43 Aligned_cols=206 Identities=57% Similarity=1.050 Sum_probs=187.4
Q ss_pred CCeeecCcCCCCCccccCCCCcchHHHHHHHHHHHHHHHhcCCccccCHhHhhhcCCCCCCCCCCCCCCCCCCCchHHHH
Q 017318 145 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAF 224 (373)
Q Consensus 145 P~~~Dwr~~g~vtpVkdQg~cGsCwAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~~~~~~~~gC~GG~~~~a~ 224 (373)
|++||||+.+.++||+|||.||+|||||++++||+++++++++...||+|+|++|... .+.+|+||.+..++
T Consensus 1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~--------~~~gC~GG~~~~a~ 72 (210)
T cd02248 1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTS--------GNNGCNGGNPDNAF 72 (210)
T ss_pred CCcccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCC--------CCCCCCCCCHHHhH
Confidence 7899999999999999999999999999999999999999999999999999999863 26799999999999
Q ss_pred HHHHHcCCCCCCCCcCCCCCCCCCCCcCCCCCceEEEeeeeeeCc-hHHHHHHHHHhCCCeEEEEEccc-cccccCceec
Q 017318 225 EYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSC 302 (373)
Q Consensus 225 ~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~i~~~~~i~~-~~~~ik~~l~~~gPV~v~i~~~~-f~~y~~Gi~~ 302 (373)
+++.+. |+++|++|||.... ..|+.......+++++|..+.. +.++||++|+++|||++++.+.. |+.|++|||.
T Consensus 73 ~~~~~~-Gi~~e~~yPY~~~~--~~C~~~~~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~y~~Giy~ 149 (210)
T cd02248 73 EYVKNG-GLASESDYPYTGKD--GTCKYNSSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIYS 149 (210)
T ss_pred HHHHHC-CcCccccCCccCCC--CCccCCCCcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecCcccccCCCCcee
Confidence 988766 99999999999866 7898877667789999998876 58899999999999999999874 9999999998
Q ss_pred CCCCC-CCCCeEEEEEEEeccCCCCCCCCCCCEEEEEcCCCCCCCCCcEEEEEcCCCeecccCceee
Q 017318 303 PYICS-RRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVST 368 (373)
Q Consensus 303 ~~~c~-~~~~HaV~iVGyg~~~~~~~~~~g~~ywiikNSWG~~WGe~GY~~i~r~~n~CGi~~~~~~ 368 (373)
...|. ..++|||+|||||++ .+++|||||||||++||++|||||+|+.|.|||++.+..
T Consensus 150 ~~~~~~~~~~Hav~iVGy~~~-------~~~~ywiv~NSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~ 209 (210)
T cd02248 150 GPCCSNTNLNHAVLLVGYGTE-------NGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYASY 209 (210)
T ss_pred CCCCCCCcCCEEEEEEEEeec-------CCceEEEEEcCCCCccccCcEEEEEcCCCccCceeeeec
Confidence 87774 448999999999987 578999999999999999999999999999999987653
No 10
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=1.2e-55 Score=442.08 Aligned_cols=215 Identities=24% Similarity=0.499 Sum_probs=180.8
Q ss_pred CCCCCeeecCcCC---CCCccccCCC---CcchHHHHHHHHHHHHHHHhcC------CccccCHhHhhhcCCCCCCCCCC
Q 017318 142 NDLPADFDWREKG---AVGPVKDQGS---CGSCWSFSTTGALEGANFLATG------KLVSLSEQQLVDCDHECDPEEPG 209 (373)
Q Consensus 142 ~~lP~~~Dwr~~g---~vtpVkdQg~---cGsCwAfA~~~alE~~~~~~~g------~~~~LS~q~l~dc~~~~~~~~~~ 209 (373)
.+||++||||++| +|+||||||. ||||||||++++||++++++++ +.+.||+|+|+||+..
T Consensus 203 ~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~------- 275 (548)
T PTZ00364 203 DPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQY------- 275 (548)
T ss_pred cCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccCC-------
Confidence 5799999999987 7999999999 9999999999999999999873 4688999999999864
Q ss_pred CCCCCCCCCchHHHHHHHHHcCCCCCCCCc--CCCCCCC-CCCCcCCCCCceEEEeeee------eeCchHHHHHHHHHh
Q 017318 210 SCDSGCNGGLMNSAFEYTLKAGGLMREEDY--PYTGTDR-GHACKFDKSKIAASVANFS------VVSLDEDQIAANLVK 280 (373)
Q Consensus 210 ~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~y--PY~~~~~-~~~C~~~~~~~~~~i~~~~------~i~~~~~~ik~~l~~ 280 (373)
+.||+||++..|++|+.+. |+++|++| ||++.+. ...|+.......+.++++. .+..++++|+.+|++
T Consensus 276 --n~GCdGG~p~~A~~yi~~~-GI~tE~dY~~PY~~~dg~~~~Ck~~~~~~~y~~~~~~~I~gyy~~~~~e~~I~~eI~~ 352 (548)
T PTZ00364 276 --GQGCAGGFPEEVGKFAETF-GILTTDSYYIPYDSGDGVERACKTRRPSRRYYFTNYGPLGGYYGAVTDPDEIIWEIYR 352 (548)
T ss_pred --CCCCCCCcHHHHHHHHHhC-CcccccccCCCCCCCCCCCCCCCCCcccceeeeeeeEEecceeecCCcHHHHHHHHHH
Confidence 7899999999999999876 99999999 9987651 1258865554444444443 333478899999999
Q ss_pred CCCeEEEEEccc-cccccCceecCC--------CC-----------CCCCCeEEEEEEEeccCCCCCCCCCCCEEEEEcC
Q 017318 281 NGPLAVAINAVY-MQTYIGGVSCPY--------IC-----------SRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNS 340 (373)
Q Consensus 281 ~gPV~v~i~~~~-f~~y~~Gi~~~~--------~c-----------~~~~~HaV~iVGyg~~~~~~~~~~g~~ywiikNS 340 (373)
+|||+++|++.. |+.|++|||... .| ...++|||+|||||.+. +|.+|||||||
T Consensus 353 ~GPVsVaIda~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de------~G~~YWIVKNS 426 (548)
T PTZ00364 353 HGPVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDE------NGGDYWLVLDP 426 (548)
T ss_pred cCCeEEEEEechHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccC------CCceEEEEECC
Confidence 999999999864 889999987521 12 12379999999999752 67899999999
Q ss_pred CCC--CCCCCcEEEEEcCCCeecccCceeeEEec
Q 017318 341 WGE--SWGENGYYKICRGRNVCGVDSMVSTVAAA 372 (373)
Q Consensus 341 WG~--~WGe~GY~~i~r~~n~CGi~~~~~~~~~~ 372 (373)
||+ +|||+|||||.||.|+|||++.+.++.++
T Consensus 427 WGt~~~WGE~GYfRI~RG~N~CGIes~~v~~~~~ 460 (548)
T PTZ00364 427 WGSRRSWCDGGTRKIARGVNAYNIESEVVVMYWA 460 (548)
T ss_pred CCCCCCcccCCeEEEEcCCCcccccceeeeeeee
Confidence 999 99999999999999999999999987653
No 11
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=4.4e-55 Score=442.18 Aligned_cols=214 Identities=29% Similarity=0.603 Sum_probs=178.9
Q ss_pred CCCCCCeeecCcC----CCCCccccCCCCcchHHHHHHHHHHHHHHHhcCC-----c-----cccCHhHhhhcCCCCCCC
Q 017318 141 TNDLPADFDWREK----GAVGPVKDQGSCGSCWSFSTTGALEGANFLATGK-----L-----VSLSEQQLVDCDHECDPE 206 (373)
Q Consensus 141 ~~~lP~~~Dwr~~----g~vtpVkdQg~cGsCwAfA~~~alE~~~~~~~g~-----~-----~~LS~q~l~dc~~~~~~~ 206 (373)
..+||++||||+. +.++||+|||.||||||||++++||++++|++++ . ..||+|+|+||+..
T Consensus 378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~---- 453 (693)
T PTZ00049 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFY---- 453 (693)
T ss_pred cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCCC----
Confidence 4589999999985 6799999999999999999999999999998643 1 27999999999864
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHcCCCCCCCCcCCCCCCCCCCCcCCCC-------------------------------
Q 017318 207 EPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKS------------------------------- 255 (373)
Q Consensus 207 ~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~------------------------------- 255 (373)
+.||+||++..|++|+.+. ||++|++|||++.. +.|+....
T Consensus 454 -----nqGC~GG~~~~A~kya~~~-GI~tEscYPY~a~~--g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 525 (693)
T PTZ00049 454 -----DQGCNGGFPYLVSKMAKLQ-GIPLDKVFPYTATE--QTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHAD 525 (693)
T ss_pred -----CCCcCCCcHHHHHHHHHHC-CCCcCCccCCcCCC--CCCCCCCCCcccccccccccccccccccccccccccccc
Confidence 7899999999999999877 99999999999876 67764311
Q ss_pred --------CceEEEeeeeeeC--------chHHHHHHHHHhCCCeEEEEEccc-cccccCceecCC------CCCC----
Q 017318 256 --------KIAASVANFSVVS--------LDEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPY------ICSR---- 308 (373)
Q Consensus 256 --------~~~~~i~~~~~i~--------~~~~~ik~~l~~~gPV~v~i~~~~-f~~y~~Gi~~~~------~c~~---- 308 (373)
...+.+++|.++. .++++|+++|+.+|||+++|++.. |++|++|||... .|..
T Consensus 526 ~~~~~~~~~~r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~~dF~~YksGVY~~~~~~h~~~C~~d~~~ 605 (693)
T PTZ00049 526 FEAPISSEPARWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPK 605 (693)
T ss_pred ccccccccccceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEechhhhcCCCccccCcccccccccCCcccc
Confidence 1123345565552 268899999999999999999864 999999999753 3742
Q ss_pred -----------CCCeEEEEEEEeccCCCCCCCCC--CCEEEEEcCCCCCCCCCcEEEEEcCCCeecccCceeeEEe
Q 017318 309 -----------RLDHGVLLVGYGSAGYAPIRLKE--KPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTVAA 371 (373)
Q Consensus 309 -----------~~~HaV~iVGyg~~~~~~~~~~g--~~ywiikNSWG~~WGe~GY~~i~r~~n~CGi~~~~~~~~~ 371 (373)
.++|||+|||||.+. .+| .+|||||||||++|||+|||||.||.|.|||++.++++.+
T Consensus 606 ~~~~~~~~G~e~~NHAVlIVGwG~d~-----enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N~CGIEs~a~~~~p 676 (693)
T PTZ00049 606 HNGVYNITGWEKVNHAIVLVGWGEEE-----INGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFIEP 676 (693)
T ss_pred ccccccccccccCceEEEEEEecccc-----CCCcccCEEEEECCCCCCcccCceEEEEcCCCccCCccceeEEee
Confidence 269999999999751 134 4799999999999999999999999999999999987654
No 12
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=8e-55 Score=396.24 Aligned_cols=210 Identities=43% Similarity=0.867 Sum_probs=181.4
Q ss_pred CCCeeecCcC-CCCCccccCCCCcchHHHHHHHHHHHHHHHhc-CCccccCHhHhhhcCCCCCCCCCCCCCCCCCCCchH
Q 017318 144 LPADFDWREK-GAVGPVKDQGSCGSCWSFSTTGALEGANFLAT-GKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMN 221 (373)
Q Consensus 144 lP~~~Dwr~~-g~vtpVkdQg~cGsCwAfA~~~alE~~~~~~~-g~~~~LS~q~l~dc~~~~~~~~~~~~~~gC~GG~~~ 221 (373)
||++||||+. +.++||+|||.||+|||||+++++|++++++. +..+.||+|+|++|... .+.+|+||++.
T Consensus 1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~~--------~~~~c~gg~~~ 72 (219)
T PF00112_consen 1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSNK--------YNKGCDGGSPF 72 (219)
T ss_dssp STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHSTG--------TSSTTBBBEHH
T ss_pred CCCCEecccCCCCcCccccCCcccccccchhccceeccccccccccccccccccccccccc--------cccccccCccc
Confidence 7999999998 48999999999999999999999999999998 78899999999999972 15699999999
Q ss_pred HHHHHHHHcCCCCCCCCcCCCCCCCCCCCcCCCCCc-eEEEeeeeeeCc-hHHHHHHHHHhCCCeEEEEEccc--ccccc
Q 017318 222 SAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKI-AASVANFSVVSL-DEDQIAANLVKNGPLAVAINAVY--MQTYI 297 (373)
Q Consensus 222 ~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~-~~~i~~~~~i~~-~~~~ik~~l~~~gPV~v~i~~~~--f~~y~ 297 (373)
.|+++++++.|+++|++|||.+... ..|....... ..++..|..+.. +.++||++|+++|||++++.+.. |+.|+
T Consensus 73 ~a~~~~~~~~Gi~~e~~~pY~~~~~-~~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~ 151 (219)
T PF00112_consen 73 DALKYIKNNNGIVTEEDYPYNGNEN-PTCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYK 151 (219)
T ss_dssp HHHHHHHHHTSBEBTTTS--SSSSS-CSSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEE
T ss_pred ccceeecccCccccccccccccccc-ccccccccccccccccccccccccchhHHHHHHhhCceeeeeeecccccccccc
Confidence 9999999945999999999997652 4688664443 468888888876 59999999999999999998765 89999
Q ss_pred CceecCCCCCC-CCCeEEEEEEEeccCCCCCCCCCCCEEEEEcCCCCCCCCCcEEEEEcCCC-eecccCceeeE
Q 017318 298 GGVSCPYICSR-RLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRN-VCGVDSMVSTV 369 (373)
Q Consensus 298 ~Gi~~~~~c~~-~~~HaV~iVGyg~~~~~~~~~~g~~ywiikNSWG~~WGe~GY~~i~r~~n-~CGi~~~~~~~ 369 (373)
+|||.+..|.. .++|||+|||||++ .+++|||||||||++||++|||||+|+.| +|||++.++++
T Consensus 152 ~gi~~~~~~~~~~~~Hav~iVGy~~~-------~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~~c~i~~~~~~~ 218 (219)
T PF00112_consen 152 SGIYDPPDCSNESGGHAVLIVGYDDE-------NGKGYWIVKNSWGTDWGDNGYFRISYDYNNECGIESQAVYP 218 (219)
T ss_dssp SSEECSTSSSSSSEEEEEEEEEEEEE-------TTEEEEEEE-SBTTTSTBTTEEEEESSSSSGGGTTSSEEEE
T ss_pred ceeeeccccccccccccccccccccc-------cceeeEeeehhhCCccCCCeEEEEeeCCCCcCccCceeeec
Confidence 99999888875 48999999999998 58999999999999999999999999997 99999999876
No 13
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=3.5e-51 Score=360.39 Aligned_cols=170 Identities=61% Similarity=1.133 Sum_probs=151.9
Q ss_pred CCCeeecCcCCCCCccccCCCCcchHHHHHHHHHHHHHHHhcCCccccCHhHhhhcCCCCCCCCCCCCCCCCCCCchHHH
Q 017318 144 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSA 223 (373)
Q Consensus 144 lP~~~Dwr~~g~vtpVkdQg~cGsCwAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~~~~~~~~gC~GG~~~~a 223 (373)
||++||||+.++++||||||.||+|||||+++++|+++++++++.++||+|+|++|... .+.||+||.+..|
T Consensus 1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~--------~~~gC~GG~~~~a 72 (174)
T smart00645 1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTG--------GNNGCNGGLPDNA 72 (174)
T ss_pred CCCcCcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCC--------CCCCCCCcCHHHH
Confidence 69999999999999999999999999999999999999999998999999999999873 2569999999999
Q ss_pred HHHHHHcCCCCCCCCcCCCCCCCCCCCcCCCCCceEEEeeeeeeCchHHHHHHHHHhCCCeEEEEEccccccccCceecC
Q 017318 224 FEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCP 303 (373)
Q Consensus 224 ~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~i~~~~~i~~~~~~ik~~l~~~gPV~v~i~~~~f~~y~~Gi~~~ 303 (373)
++|+.+++|+++|++|||+. ++.+....|++|++|||..
T Consensus 73 ~~~~~~~~Gi~~e~~~PY~~-----------------------------------------~~~~~~~~f~~Y~~Gi~~~ 111 (174)
T smart00645 73 FEYIKKNGGLETESCYPYTG-----------------------------------------SVAIDASDFQFYKSGIYDH 111 (174)
T ss_pred HHHHHHcCCcccccccCccc-----------------------------------------EEEEEcccccCCcCeEECC
Confidence 99998876899999999953 4455555699999999988
Q ss_pred CCCCCC-CCeEEEEEEEeccCCCCCCCCCCCEEEEEcCCCCCCCCCcEEEEEcCC-CeecccCceee
Q 017318 304 YICSRR-LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVST 368 (373)
Q Consensus 304 ~~c~~~-~~HaV~iVGyg~~~~~~~~~~g~~ywiikNSWG~~WGe~GY~~i~r~~-n~CGi~~~~~~ 368 (373)
..|... ++|+|+|||||.+. ++++|||||||||+.|||+|||||.|+. |.|||+.....
T Consensus 112 ~~~~~~~~~Hav~ivGyg~~~------~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~~~~ 172 (174)
T smart00645 112 PGCGSGTLDHAVLIVGYGTEE------NGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASVAS 172 (174)
T ss_pred CCCCCCcccEEEEEEEEeecC------CCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceeeeee
Confidence 778765 79999999999752 5789999999999999999999999998 99999876643
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=5.6e-47 Score=345.34 Aligned_cols=198 Identities=31% Similarity=0.511 Sum_probs=164.7
Q ss_pred eeecCcCCCCCccccCCCCcchHHHHHHHHHHHHHHHhcC--CccccCHhHhhhcCCCCCCCCCCCCCCCCCCCchHHHH
Q 017318 147 DFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATG--KLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAF 224 (373)
Q Consensus 147 ~~Dwr~~g~vtpVkdQg~cGsCwAfA~~~alE~~~~~~~g--~~~~LS~q~l~dc~~~~~~~~~~~~~~gC~GG~~~~a~ 224 (373)
.+|||+.+ ++||||||.||+|||||+++++|+++.++++ +.++||+|+|++|...... ....+|.||.+..++
T Consensus 1 ~~d~r~~~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~----~~~~~c~gG~~~~~~ 75 (223)
T cd02619 1 SVDLRPLR-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECL----GINGSCDGGGPLSAL 75 (223)
T ss_pred CCcchhcC-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhcccccc----ccCCCCCCCcHHHHH
Confidence 47999988 9999999999999999999999999999987 8899999999999875110 014799999999999
Q ss_pred H-HHHHcCCCCCCCCcCCCCCCCCCCCcC----CCCCceEEEeeeeeeCc-hHHHHHHHHHhCCCeEEEEEccc-ccccc
Q 017318 225 E-YTLKAGGLMREEDYPYTGTDRGHACKF----DKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAINAVY-MQTYI 297 (373)
Q Consensus 225 ~-~~~~~~Gi~~e~~yPY~~~~~~~~C~~----~~~~~~~~i~~~~~i~~-~~~~ik~~l~~~gPV~v~i~~~~-f~~y~ 297 (373)
. ++... |+++|++|||.... ..|.. ......+++..|..+.. ++++||++|.++|||++++.+.. |..|+
T Consensus 76 ~~~~~~~-Gi~~e~~~Py~~~~--~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~~~~~~~~ 152 (223)
T cd02619 76 LKLVALK-GIPPEEDYPYGAES--DGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVYSGFDRLK 152 (223)
T ss_pred HHHHHHc-CCCccccCCCCCCC--CCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcccchhccc
Confidence 8 66555 99999999999876 44542 23345578888888866 58999999999999999999875 88999
Q ss_pred Ccee-----cCCCCCCC-CCeEEEEEEEeccCCCCCCCCCCCEEEEEcCCCCCCCCCcEEEEEcCC
Q 017318 298 GGVS-----CPYICSRR-LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR 357 (373)
Q Consensus 298 ~Gi~-----~~~~c~~~-~~HaV~iVGyg~~~~~~~~~~g~~ywiikNSWG~~WGe~GY~~i~r~~ 357 (373)
+|++ ....|... ++|||+|||||++.. .+++|||||||||+.||++||+||+++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~Hav~ivGy~~~~~-----~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 153 EGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYV-----EGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred CccccccccccccCCCccCCeEEEEEeecCCCC-----CCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 9986 22333333 899999999998721 3789999999999999999999999974
No 15
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=6e-47 Score=392.88 Aligned_cols=206 Identities=24% Similarity=0.486 Sum_probs=164.5
Q ss_pred CCccccCCCCcchHHHHHHHHHHHHHHHhcCCccccCHhHhhhcCCCCCCCCCCCCCCCCCCCchH-HHHHHHHHcCCCC
Q 017318 156 VGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMN-SAFEYTLKAGGLM 234 (373)
Q Consensus 156 vtpVkdQg~cGsCwAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~~~~~~~~gC~GG~~~-~a~~~~~~~~Gi~ 234 (373)
..||||||.||+|||||+++++|+++++++++.+.||+|+|+||+.. ..+.||.||+.. .++.|+.+.+|++
T Consensus 544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~-------~gn~GC~GG~~~~efl~yI~e~GgLp 616 (1004)
T PTZ00462 544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKG-------EHKDRCDEGSNPLEFLQIIEDNGFLP 616 (1004)
T ss_pred CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccc-------cCCCCCCCCCcHHHHHHHHHHcCCCc
Confidence 46999999999999999999999999999999999999999999864 236799999755 5558888887899
Q ss_pred CCCCcCCCCCCCCCCCcCCCCC------------------ceEEEeeeeeeCch---------HHHHHHHHHhCCCeEEE
Q 017318 235 REEDYPYTGTDRGHACKFDKSK------------------IAASVANFSVVSLD---------EDQIAANLVKNGPLAVA 287 (373)
Q Consensus 235 ~e~~yPY~~~~~~~~C~~~~~~------------------~~~~i~~~~~i~~~---------~~~ik~~l~~~gPV~v~ 287 (373)
+|++|||.+....+.|+..... ..+.+.+|..+... ++.|+++|+.+|||+|+
T Consensus 617 tESdYPYt~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~ 696 (1004)
T PTZ00462 617 ADSNYLYNYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAY 696 (1004)
T ss_pred ccccCCCccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEE
Confidence 9999999863222678743210 12233455544321 46899999999999999
Q ss_pred EEccccccc-cCceecCCCCCCC-CCeEEEEEEEeccCCCCCCCCCCCEEEEEcCCCCCCCCCcEEEEEc-CCCeecccC
Q 017318 288 INAVYMQTY-IGGVSCPYICSRR-LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICR-GRNVCGVDS 364 (373)
Q Consensus 288 i~~~~f~~y-~~Gi~~~~~c~~~-~~HaV~iVGyg~~~~~~~~~~g~~ywiikNSWG~~WGe~GY~~i~r-~~n~CGi~~ 364 (373)
|++..|+.| .+|||....|+.. ++|||+|||||.+... ...+++|||||||||+.|||+|||||.| |.|+|||..
T Consensus 697 IdAsdf~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~--eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~n~CGin~ 774 (1004)
T PTZ00462 697 IKAENVLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYIND--EDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCEDNF 774 (1004)
T ss_pred EEeehHHhhhcCCccccCCCCCCcCCceEEEEEecccccc--cCCCCceEEEEcCCCCCcCCCeEEEEEeCCCCCCccch
Confidence 998777777 5899877789854 8999999999974210 0136789999999999999999999998 789999998
Q ss_pred ceeeEE
Q 017318 365 MVSTVA 370 (373)
Q Consensus 365 ~~~~~~ 370 (373)
..++|+
T Consensus 775 i~t~~~ 780 (1004)
T PTZ00462 775 IHSVVI 780 (1004)
T ss_pred heeeee
Confidence 877764
No 16
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=6.6e-44 Score=325.25 Aligned_cols=269 Identities=28% Similarity=0.470 Sum_probs=204.8
Q ss_pred HHHhcCCCCCeeeec-ccCCCCChHHHhhhhccccccc-CCCCC-CCCCCCCCCCCCCCeeecCcC--CCCCccccCCCC
Q 017318 91 AARHQKLDPSATHGI-TQFSDLTPAEFRRTYLGLRRKL-RLPKD-ADQAPILPTNDLPADFDWREK--GAVGPVKDQGSC 165 (373)
Q Consensus 91 i~~~n~~~~s~~~g~-n~FaDlt~~Ef~~~~~g~~~~~-~~~~~-~~~~~~~~~~~lP~~~Dwr~~--g~vtpVkdQg~c 165 (373)
|+..|.-+-+++.+- .+|-.||.++-.+..||..++. .+... .....+.+..+||+.||-|++ +++.|+-|||+|
T Consensus 153 iE~in~G~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv~nMNEi~~~l~p~~~LPE~F~As~KWp~liH~plDQgnC 232 (470)
T KOG1544|consen 153 IEAINQGNYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSVMNMNEIYTVLNPGEVLPEAFEASEKWPNLIHEPLDQGNC 232 (470)
T ss_pred HHHHhcCCccccccchhhhhcccccccceeeecccCchhhhhhHHhHhhccCcccccchhhhhhhcCCccccCccccCCc
Confidence 444454444555443 4688888887656556643321 11111 111223345799999999997 899999999999
Q ss_pred cchHHHHHHHHHHHHHHHhcCC--ccccCHhHhhhcCCCCCCCCCCCCCCCCCCCchHHHHHHHHHcCCCCCCCCcCCCC
Q 017318 166 GSCWSFSTTGALEGANFLATGK--LVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTG 243 (373)
Q Consensus 166 GsCwAfA~~~alE~~~~~~~g~--~~~LS~q~l~dc~~~~~~~~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~ 243 (373)
++.|||+++++...+++|++.. ...||+|+|++|... ...||+||....|+=|+.+. |++...+|||..
T Consensus 233 a~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h--------~q~GC~gG~lDRAWWYlRKr-GvVsdhCYP~~~ 303 (470)
T KOG1544|consen 233 AGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTH--------QQQGCRGGRLDRAWWYLRKR-GVVSDHCYPFSG 303 (470)
T ss_pred ccceeeeeehhccceeEEeeccccccccChHHhcchhhh--------hhccCccCcccchheeeecc-cccccccccccC
Confidence 9999999999999998887643 468999999999864 37899999999999999877 999999999975
Q ss_pred CCC--CCCC------------------cCC--CCCceEEEeeeeeeCchHHHHHHHHHhCCCeEEEEEccc-cccccCce
Q 017318 244 TDR--GHAC------------------KFD--KSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVY-MQTYIGGV 300 (373)
Q Consensus 244 ~~~--~~~C------------------~~~--~~~~~~~i~~~~~i~~~~~~ik~~l~~~gPV~v~i~~~~-f~~y~~Gi 300 (373)
.+. .+.| ... .++..++++.-..++.+|++|+++|+++|||.+.+.+.. |..|++||
T Consensus 304 dQ~~~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVSSnE~eImkElM~NGPVQA~m~VHEDFF~YkgGi 383 (470)
T KOG1544|consen 304 DQAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVSSNEKEIMKELMENGPVQALMEVHEDFFLYKGGI 383 (470)
T ss_pred CCCCCCCCceeeccccCcccccccCcCCCcccccCceeeecCCeeccCCHHHHHHHHHhCCChhhhhhhhhhhhhhccce
Confidence 431 1233 322 223456666666677789999999999999999887765 88999999
Q ss_pred ecCCCCC--------CCCCeEEEEEEEeccCCCCCCCCCCCEEEEEcCCCCCCCCCcEEEEEcCCCeecccCceeeEE
Q 017318 301 SCPYICS--------RRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTVA 370 (373)
Q Consensus 301 ~~~~~c~--------~~~~HaV~iVGyg~~~~~~~~~~g~~ywiikNSWG~~WGe~GY~~i~r~~n~CGi~~~~~~~~ 370 (373)
|...+.. ..+.|+|.|.|||.+... .....+|||..||||+.|||+|||||-||.|.|.|+++++++.
T Consensus 384 Y~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~--~G~~~KyW~aANSWG~~WGE~GYFriLRGvNecdIEsfvIgAW 459 (470)
T KOG1544|consen 384 YSHTPVSLGRPERYRRHGTHSVKITGWGEETLP--DGRTLKYWTAANSWGPAWGERGYFRILRGVNECDIESFVIGAW 459 (470)
T ss_pred eeccccccCCchhhhhcccceEEEeecccccCC--CCCeeEEEEeecccccccccCceEEEeccccchhhhHhhhhhh
Confidence 9765443 127899999999987321 1233569999999999999999999999999999999998764
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.7e-31 Score=245.59 Aligned_cols=210 Identities=29% Similarity=0.416 Sum_probs=137.3
Q ss_pred CCCCeeecCcCCCCCccccCCCCcchHHHHHHHHHHHHHHHhcCCccccCHhHhhhcCCCCCCCCCCCCCCC-CCCCchH
Q 017318 143 DLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSG-CNGGLMN 221 (373)
Q Consensus 143 ~lP~~~Dwr~~g~vtpVkdQg~cGsCwAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~~~~~~~~~~g-C~GG~~~ 221 (373)
.+|+.||||+.|.|+||||||.||+||||++++++|+.+.-.. ...+|+-.+..-...+.+. .+..+ -+||...
T Consensus 98 s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~---~fd~~~~d~g~~~ 172 (372)
T COG4870 98 SLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEK---GFDYTSNDGGNAD 172 (372)
T ss_pred cchhheeeeccCCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccc---cCCCccccCCccc
Confidence 5999999999999999999999999999999999998764433 3344444432221111000 01111 2477888
Q ss_pred HHHHHHHHcCCCCCCCCcCCCCCCCCCCCcCCCCCceEEEeeeeeeCc-----hHHHHHHHHHhCCCeEEEE--Eccccc
Q 017318 222 SAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-----DEDQIAANLVKNGPLAVAI--NAVYMQ 294 (373)
Q Consensus 222 ~a~~~~~~~~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~i~~~~~i~~-----~~~~ik~~l~~~gPV~v~i--~~~~f~ 294 (373)
.+..|+.++.|.+.|.+-||.... ..|.... +...++..-..++. +...|++++...|-+...| ++..+.
T Consensus 173 m~~a~l~e~sgpv~et~d~y~~~s--~~~~~~~-p~~k~~~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~id~~~~~ 249 (372)
T COG4870 173 MSAAYLTEWSGPVYETDDPYSENS--YFSPTNL-PVTKHVQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDATNSL 249 (372)
T ss_pred cccccccccCCcchhhcCcccccc--ccCCcCC-chhhccccceecccchhhhcccchHHHHhhhccccceeEEeccccc
Confidence 888888898899999999998765 3443211 11222333333332 4455888888888776444 333321
Q ss_pred cccCceecCCCCCCCCCeEEEEEEEeccCCC---CCCCCCCCEEEEEcCCCCCCCCCcEEEEEcCCCeec
Q 017318 295 TYIGGVSCPYICSRRLDHGVLLVGYGSAGYA---PIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCG 361 (373)
Q Consensus 295 ~y~~Gi~~~~~c~~~~~HaV~iVGyg~~~~~---~~~~~g~~ywiikNSWG~~WGe~GY~~i~r~~n~CG 361 (373)
...-+.+.+.. ....+|||+||||++.... .-.+.|.++||||||||++||++|||||++..-.-|
T Consensus 250 ~~~~~~~~~~s-~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~ya~~g 318 (372)
T COG4870 250 GICIPYPYVDS-GENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYYALNG 318 (372)
T ss_pred ccccCCCCCCc-cccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeeecccc
Confidence 21112222211 1448999999999987321 223456789999999999999999999999753333
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.91 E-value=6.2e-24 Score=209.29 Aligned_cols=187 Identities=23% Similarity=0.338 Sum_probs=132.0
Q ss_pred CccccCCCCcchHHHHHHHHHHHHHHHh-cCCccccCHhHhhh----------------cCCCCCCCCCCC-------CC
Q 017318 157 GPVKDQGSCGSCWSFSTTGALEGANFLA-TGKLVSLSEQQLVD----------------CDHECDPEEPGS-------CD 212 (373)
Q Consensus 157 tpVkdQg~cGsCwAfA~~~alE~~~~~~-~g~~~~LS~q~l~d----------------c~~~~~~~~~~~-------~~ 212 (373)
.||+||++-|.||.||+...++.....+ +.+.+.||+.++.- +... + -.. ..
T Consensus 55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~--~--~~~R~v~~ll~~ 130 (437)
T cd00585 55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADE--P--LDDRLVQFLLAN 130 (437)
T ss_pred CCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcC--C--CccHHHHHHHhC
Confidence 4899999999999999999999987764 55789999987753 2211 0 000 13
Q ss_pred CCCCCCchHHHHHHHHHcCCCCCCCCcCCCCCCC----------------------------------------------
Q 017318 213 SGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDR---------------------------------------------- 246 (373)
Q Consensus 213 ~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~---------------------------------------------- 246 (373)
...+||....+...+.+. |+++++.||-+....
T Consensus 131 ~~~DGGqw~m~~~li~KY-GvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~ 209 (437)
T cd00585 131 PQNDGGQWDMLVNLIEKY-GLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYR 209 (437)
T ss_pred CcCCCCchHHHHHHHHHc-CCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 456899999999988776 999999999542110
Q ss_pred -----CCCCc--C-----C----------------------------------CC--C---ceEEE-----------eee
Q 017318 247 -----GHACK--F-----D----------------------------------KS--K---IAASV-----------ANF 264 (373)
Q Consensus 247 -----~~~C~--~-----~----------------------------------~~--~---~~~~i-----------~~~ 264 (373)
-|.+. + + +. . ..+.+ ..|
T Consensus 210 il~~~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y 289 (437)
T cd00585 210 ILAIALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILY 289 (437)
T ss_pred HHHHHcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceE
Confidence 00000 0 0 00 0 00011 122
Q ss_pred eeeCchHHHHH----HHHHhCCCeEEEEEccccccccCceecCC---------------------CCCCCCCeEEEEEEE
Q 017318 265 SVVSLDEDQIA----ANLVKNGPLAVAINAVYMQTYIGGVSCPY---------------------ICSRRLDHGVLLVGY 319 (373)
Q Consensus 265 ~~i~~~~~~ik----~~l~~~gPV~v~i~~~~f~~y~~Gi~~~~---------------------~c~~~~~HaV~iVGy 319 (373)
..++ .+.|+ ++|..++||.++.++..|..|++||+.+. .|.+..+|||+||||
T Consensus 290 ~Nvp--~d~l~~~~~~~L~~g~pV~~g~Dv~~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv 367 (437)
T cd00585 290 LNVP--MDVLKKAAIAQLKDGEPVWFGCDVGKFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGV 367 (437)
T ss_pred EecC--HHHHHHHHHHHHhcCCCEEEEEEcChhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEE
Confidence 2222 34444 67778889999999988889999999653 234447999999999
Q ss_pred eccCCCCCCCCCC-CEEEEEcCCCCCCCCCcEEEEEcC
Q 017318 320 GSAGYAPIRLKEK-PYWIIKNSWGESWGENGYYKICRG 356 (373)
Q Consensus 320 g~~~~~~~~~~g~-~ywiikNSWG~~WGe~GY~~i~r~ 356 (373)
|.+. +|+ .||+||||||+.||++|||+|+++
T Consensus 368 ~~D~------~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 368 DLDE------DGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred EecC------CCCcceEEEEcccCCCCCCCcceehhHH
Confidence 9762 465 599999999999999999999985
No 19
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.71 E-value=1.6e-16 Score=156.92 Aligned_cols=191 Identities=24% Similarity=0.379 Sum_probs=110.0
Q ss_pred CccccCCCCcchHHHHHHHHHHHHHHHhcC-CccccCHhHhh----------------hcCCCCCCCCCC-----CCCCC
Q 017318 157 GPVKDQGSCGSCWSFSTTGALEGANFLATG-KLVSLSEQQLV----------------DCDHECDPEEPG-----SCDSG 214 (373)
Q Consensus 157 tpVkdQg~cGsCwAfA~~~alE~~~~~~~g-~~~~LS~q~l~----------------dc~~~~~~~~~~-----~~~~g 214 (373)
.||+||..-|.||.||+...++..+..+.+ +.++||+-+|. ++... +.... .....
T Consensus 56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~--~~d~R~v~~ll~~~~ 133 (438)
T PF03051_consen 56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADE--PLDDRLVRFLLKNPV 133 (438)
T ss_dssp -S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS---TTSHHHHHHHHSTT
T ss_pred CCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcC--CcchHHHHHHHhcCC
Confidence 499999999999999999999998877765 78999998864 33321 00000 00234
Q ss_pred CCCCchHHHHHHHHHcCCCCCCCCcCCCCCC--------------------------C----------------------
Q 017318 215 CNGGLMNSAFEYTLKAGGLMREEDYPYTGTD--------------------------R---------------------- 246 (373)
Q Consensus 215 C~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~--------------------------~---------------------- 246 (373)
.+||....+...+.+. |+++.+.||-+... .
T Consensus 134 ~DGGqw~~~~nli~KY-GvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il 212 (438)
T PF03051_consen 134 SDGGQWDMVVNLIKKY-GVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRIL 212 (438)
T ss_dssp -S-B-HHHHHHHHHHH----BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHc-CcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 6899999988888777 99999999964211 0
Q ss_pred ---CCCCc--C-----CCCC---------------------------------------ceEEE-----------eeeee
Q 017318 247 ---GHACK--F-----DKSK---------------------------------------IAASV-----------ANFSV 266 (373)
Q Consensus 247 ---~~~C~--~-----~~~~---------------------------------------~~~~i-----------~~~~~ 266 (373)
-|.+. + ++.+ ..+.+ ..|..
T Consensus 213 ~~~lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylN 292 (438)
T PF03051_consen 213 AIYLGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLN 292 (438)
T ss_dssp HHHH---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE
T ss_pred HHHcCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEec
Confidence 00000 0 0000 01111 11333
Q ss_pred eCch--HHHHHHHHHhCCCeEEEEEccccccccCceecCCCCC---------------------CCCCeEEEEEEEeccC
Q 017318 267 VSLD--EDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICS---------------------RRLDHGVLLVGYGSAG 323 (373)
Q Consensus 267 i~~~--~~~ik~~l~~~gPV~v~i~~~~f~~y~~Gi~~~~~c~---------------------~~~~HaV~iVGyg~~~ 323 (373)
++.+ .+.+.++|..+-||..+-++..+..-+.||.....-+ +..+|||+|||.+.+.
T Consensus 293 vpid~lk~~~i~~Lk~G~~VwfgcDV~k~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~ 372 (438)
T PF03051_consen 293 VPIDELKDAAIKSLKAGYPVWFGCDVGKFFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDE 372 (438)
T ss_dssp --HHHHHHHHHHHHHTT--EEEEEETTTTEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-T
T ss_pred cCHHHHHHHHHHHHHcCCcEEEeccCCccccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEecc
Confidence 3332 2345566666679999999987556788987543211 2268999999999852
Q ss_pred CCCCCCCCC-CEEEEEcCCCCCCCCCcEEEEEcC
Q 017318 324 YAPIRLKEK-PYWIIKNSWGESWGENGYYKICRG 356 (373)
Q Consensus 324 ~~~~~~~g~-~ywiikNSWG~~WGe~GY~~i~r~ 356 (373)
+|+ .+|+|+||||++.|.+|||.++..
T Consensus 373 ------~g~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 373 ------DGKPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp ------TSSEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred ------CCCeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 566 499999999999999999999864
No 20
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.64 E-value=4.8e-16 Score=111.56 Aligned_cols=57 Identities=51% Similarity=0.845 Sum_probs=50.9
Q ss_pred HHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHhc-CCCCCeeeecccCCCCChHHH
Q 017318 60 FSLFKKKFNKAYASQEEHDHRFTIFKANLRRAARHQ-KLDPSATHGITQFSDLTPAEF 116 (373)
Q Consensus 60 F~~f~~~~~K~Y~~~eE~~~R~~iF~~Nl~~i~~~n-~~~~s~~~g~n~FaDlt~~Ef 116 (373)
|+.|+++|+|.|.+.+|..+|+.+|++|+++|.+|| ..+.+|++|+|+|+|||++||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence 889999999999999999999999999999999999 667899999999999999997
No 21
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.46 E-value=7.2e-14 Score=99.75 Aligned_cols=56 Identities=48% Similarity=0.729 Sum_probs=52.7
Q ss_pred HHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHhcCCC-CCeeeecccCCCCChHH
Q 017318 60 FSLFKKKFNKAYASQEEHDHRFTIFKANLRRAARHQKLD-PSATHGITQFSDLTPAE 115 (373)
Q Consensus 60 F~~f~~~~~K~Y~~~eE~~~R~~iF~~Nl~~i~~~n~~~-~s~~~g~n~FaDlt~~E 115 (373)
|+.|+.+|+|.|.+.+|...|+.+|.+|++.|..||..+ .+|++|+|+|+|||++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence 688999999999999999999999999999999999765 68999999999999886
No 22
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=98.97 E-value=4.9e-09 Score=97.82 Aligned_cols=81 Identities=17% Similarity=0.377 Sum_probs=56.2
Q ss_pred chHHHHHHHHH----hCCCeEEEEEccccccccCceecCCCCC--------------------CC-CCeEEEEEEEeccC
Q 017318 269 LDEDQIAANLV----KNGPLAVAINAVYMQTYIGGVSCPYICS--------------------RR-LDHGVLLVGYGSAG 323 (373)
Q Consensus 269 ~~~~~ik~~l~----~~gPV~v~i~~~~f~~y~~Gi~~~~~c~--------------------~~-~~HaV~iVGyg~~~ 323 (373)
.+.+.+|++.+ .+-||-.+-++..+..=+.||......+ .. ..|||+|.|.+.+.
T Consensus 295 v~me~lkkl~~~q~qagetVwFG~dvgq~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~ 374 (444)
T COG3579 295 VDMERLKKLAIKQMQAGETVWFGCDVGQLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDE 374 (444)
T ss_pred CcHHHHHHHHHHHHhcCCcEEeecCchhhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhcccccc
Confidence 34455554433 3458988888776666677775321111 11 46999999999763
Q ss_pred CCCCCCCCC-CEEEEEcCCCCCCCCCcEEEEEc
Q 017318 324 YAPIRLKEK-PYWIIKNSWGESWGENGYYKICR 355 (373)
Q Consensus 324 ~~~~~~~g~-~ywiikNSWG~~WGe~GY~~i~r 355 (373)
+|. --|.|.||||.+=|.+|||-++-
T Consensus 375 ------~g~p~rwkVENSWG~d~G~~GyfvaSd 401 (444)
T COG3579 375 ------TGNPLRWKVENSWGKDVGKKGYFVASD 401 (444)
T ss_pred ------CCCceeeEeecccccccCCCceEeehH
Confidence 333 37999999999999999998864
No 23
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=97.64 E-value=4.2e-05 Score=71.74 Aligned_cols=84 Identities=24% Similarity=0.332 Sum_probs=55.2
Q ss_pred CccccCCCCcchHHHHHHHHHHHHHHHhcC-CccccCHhHhh----------------hcCCCCCCCCCC-----CCCCC
Q 017318 157 GPVKDQGSCGSCWSFSTTGALEGANFLATG-KLVSLSEQQLV----------------DCDHECDPEEPG-----SCDSG 214 (373)
Q Consensus 157 tpVkdQg~cGsCwAfA~~~alE~~~~~~~g-~~~~LS~q~l~----------------dc~~~~~~~~~~-----~~~~g 214 (373)
+||.||.+-|-||.|+.+..+---+..+-+ +.+.||..+|+ |-...+.+.... ..+.-
T Consensus 63 ~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP~ 142 (457)
T KOG4128|consen 63 QPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNPV 142 (457)
T ss_pred cccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCCC
Confidence 599999999999999999887544333322 45778887764 222222221110 01223
Q ss_pred CCCCchHHHHHHHHHcCCCCCCCCcCC
Q 017318 215 CNGGLMNSAFEYTLKAGGLMREEDYPY 241 (373)
Q Consensus 215 C~GG~~~~a~~~~~~~~Gi~~e~~yPY 241 (373)
-+||....-+..+++. |+.+.++||-
T Consensus 143 ~DGGqw~MfvNlVkKY-GviPKkcy~~ 168 (457)
T KOG4128|consen 143 PDGGQWQMFVNLVKKY-GVIPKKCYLH 168 (457)
T ss_pred CCCchHHHHHHHHHHh-CCCcHHhccc
Confidence 4788888877777666 9999999974
No 24
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=96.85 E-value=0.015 Score=50.42 Aligned_cols=121 Identities=17% Similarity=0.224 Sum_probs=70.5
Q ss_pred cCCCCcchHHHHHHHHHHHHH--------HHhcCCccccCHhHhhhcCCCCCCCCCCCCCCCCCCCchHHHHHHHHHcCC
Q 017318 161 DQGSCGSCWSFSTTGALEGAN--------FLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGG 232 (373)
Q Consensus 161 dQg~cGsCwAfA~~~alE~~~--------~~~~g~~~~LS~q~l~dc~~~~~~~~~~~~~~gC~GG~~~~a~~~~~~~~G 232 (373)
.||.-+=|-+|+.+++|-... .+.+.-...+|+++|.+++.. +...++|.... |
T Consensus 18 tQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~~-----------------~~~~i~y~ks~-g 79 (175)
T PF05543_consen 18 TQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSLT-----------------PNQMIKYAKSQ-G 79 (175)
T ss_dssp --SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B------------------HHHHHHHHHHT-T
T ss_pred ccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCCC-----------------HHHHHHHHHHc-C
Confidence 589999999999999887542 111222356888888777542 45677776554 3
Q ss_pred CCCCCCcCCCCCCCCCCCcCCCCCceEEEeeeeeeCchHHHHHHHHHhCCCeEEEEEccccccccCceecCCCCCCCCCe
Q 017318 233 LMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDH 312 (373)
Q Consensus 233 i~~e~~yPY~~~~~~~~C~~~~~~~~~~i~~~~~i~~~~~~ik~~l~~~gPV~v~i~~~~f~~y~~Gi~~~~~c~~~~~H 312 (373)
... .+..-.++.+++++.+-.+-|+.+..+...- .-+...+|
T Consensus 80 ~~~---------------------------~~~n~~~s~~eV~~~~~~nk~i~i~~~~v~~-----------~~~~~~gH 121 (175)
T PF05543_consen 80 RNP---------------------------QYNNRMPSFDEVKKLIDNNKGIAILADRVEQ-----------TNGPHAGH 121 (175)
T ss_dssp EEE---------------------------EEECS---HHHHHHHHHTT-EEEEEEEETTS-----------CTTB--EE
T ss_pred cch---------------------------hHhcCCCCHHHHHHHHHcCCCeEEEeccccc-----------CCCCccce
Confidence 211 1111112578899999888898887653211 11233689
Q ss_pred EEEEEEEeccCCCCCCCCCCCEEEEEcCCCC
Q 017318 313 GVLLVGYGSAGYAPIRLKEKPYWIIKNSWGE 343 (373)
Q Consensus 313 aV~iVGyg~~~~~~~~~~g~~ywiikNSWG~ 343 (373)
|++||||-.-. +|.++.++=|-|-.
T Consensus 122 AlavvGya~~~------~g~~~y~~WNPW~~ 146 (175)
T PF05543_consen 122 ALAVVGYAKPN------NGQKTYYFWNPWWN 146 (175)
T ss_dssp EEEEEEEEEET------TSEEEEEEE-TT-S
T ss_pred eEEEEeeeecC------CCCeEEEEeCCccC
Confidence 99999997642 57889999998843
No 25
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=96.40 E-value=0.026 Score=46.69 Aligned_cols=134 Identities=20% Similarity=0.257 Sum_probs=59.2
Q ss_pred ccccC--CCCcchHHHHHHHHHHHHHHHhcCCccccCHhHhhhcCCCCC---CCCC--CCCCCCCCCCchHHHHHHHHHc
Q 017318 158 PVKDQ--GSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECD---PEEP--GSCDSGCNGGLMNSAFEYTLKA 230 (373)
Q Consensus 158 pVkdQ--g~cGsCwAfA~~~alE~~~~~~~g~~~~LS~q~l~dc~~~~~---~~~~--~~~~~gC~GG~~~~a~~~~~~~ 230 (373)
|...| ..-..|+..|++-+++.. |+ ..++.+|.+-..... +... +........|.....+..+.+.
T Consensus 4 p~~~Q~~~~~~~Cg~as~~mvl~~~-----g~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (144)
T PF13529_consen 4 PYYSQYDETSYGCGPASAAMVLNYY-----GK--NISQEDLADEAGTNPDGDPNTGFVGNPYYDSGYGTSPDDLARYLEK 76 (144)
T ss_dssp -----TTT-TT-HHHHHHHHHHHHT-----T------HHHHHHHS-EE-E--TTTSEEB-SSTS-B----HHHHHHHHHH
T ss_pred CcEEeCCCCCCcCHHHHHHHHHHHc-----CC--CCCHHHHHHHhhhccCCCCCcccccCccccCCCccccHHHHHHHHH
Confidence 44556 445679999998888754 32 578888876554311 0000 0000112234444444444333
Q ss_pred CCCCCCCCcCCCCCCCCCCCcCCCCCceEEEeeeeeeCchHHHHHHHHHhCCCeEEEEEccccccccCceecCCCCCCCC
Q 017318 231 GGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRL 310 (373)
Q Consensus 231 ~Gi~~e~~yPY~~~~~~~~C~~~~~~~~~~i~~~~~i~~~~~~ik~~l~~~gPV~v~i~~~~f~~y~~Gi~~~~~c~~~~ 310 (373)
.|. ........+.+.|+++|.++.||.+.+....- ...+..+. ....
T Consensus 77 ~~~----------------------------~~~~~~~~~~~~i~~~i~~G~Pvi~~~~~~~~-~~~~~~~~----~~~~ 123 (144)
T PF13529_consen 77 YGY----------------------------KATDTSDASFDDIKQEIDAGRPVIVSVNSGWR-PPNGDGYD----GTYG 123 (144)
T ss_dssp H-T----------------------------TEEE-TTS-HHHHHHHHHTT--EEEEEETTSS---TTEEEE----E-TT
T ss_pred cCc----------------------------ceeeccCCcHHHHHHHHHCCCcEEEEEEcccc-cCCCCCcC----CCcC
Confidence 233 00011123578999999988899999973210 00111111 1236
Q ss_pred CeEEEEEEEeccCCCCCCCCCCCEEEEEcCC
Q 017318 311 DHGVLLVGYGSAGYAPIRLKEKPYWIIKNSW 341 (373)
Q Consensus 311 ~HaV~iVGyg~~~~~~~~~~g~~ywiikNSW 341 (373)
+|.|+|+||+.+ + +++|..+|
T Consensus 124 ~H~vvi~Gy~~~--------~--~~~v~DP~ 144 (144)
T PF13529_consen 124 GHYVVIIGYDED--------G--YVYVNDPW 144 (144)
T ss_dssp EEEEEEEEE-SS--------E---EEEE-TT
T ss_pred CEEEEEEEEeCC--------C--EEEEeCCC
Confidence 899999999875 2 78888877
No 26
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=90.59 E-value=0.21 Score=32.75 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=20.6
Q ss_pred HHHHHhcCCCCCeeeecccCCCCChHHHhhhhcccc
Q 017318 89 RRAARHQKLDPSATHGITQFSDLTPAEFRRTYLGLR 124 (373)
Q Consensus 89 ~~i~~~n~~~~s~~~g~n~FaDlt~~Ef~~~~~g~~ 124 (373)
++|+..|+.+.+|+.|.| |.+.+.+.+++ ++|..
T Consensus 4 e~I~~IN~~~~tWkAG~N-F~~~~~~~ik~-LlGv~ 37 (41)
T PF08127_consen 4 EFIDYINSKNTTWKAGRN-FENTSIEYIKR-LLGVL 37 (41)
T ss_dssp HHHHHHHHCT-SEEE-----SSB-HHHHHH-CS-B-
T ss_pred HHHHHHHcCCCcccCCCC-CCCCCHHHHHH-HcCCC
Confidence 467778888889999999 89999888865 45654
No 27
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=89.61 E-value=1.3 Score=39.96 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=34.5
Q ss_pred chHHHHHHHHHhCCCeEEEEEccccccc--cCceec--CCCC--C--CCCCeEEEEEEEecc
Q 017318 269 LDEDQIAANLVKNGPLAVAINAVYMQTY--IGGVSC--PYIC--S--RRLDHGVLLVGYGSA 322 (373)
Q Consensus 269 ~~~~~ik~~l~~~gPV~v~i~~~~f~~y--~~Gi~~--~~~c--~--~~~~HaV~iVGyg~~ 322 (373)
...++|...|..+||+.+-++.....-. +.-... ...| . ...+|-|+|+||+..
T Consensus 111 vs~~ei~~hl~~g~~aIvLVd~~~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~ 172 (212)
T PF09778_consen 111 VSIQEIIEHLSSGGPAIVLVDASLLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAA 172 (212)
T ss_pred ccHHHHHHHHhCCCcEEEEEccccccChhhcccccccccccccCCCCCccEEEEEEEeecCC
Confidence 3578999999999988888886542200 111111 1111 1 227999999999965
No 28
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=89.22 E-value=1.2 Score=42.64 Aligned_cols=47 Identities=19% Similarity=0.359 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCeEEEEEccccccccCceecCCCCCCCCCeEEEEEEEecc
Q 017318 271 EDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSA 322 (373)
Q Consensus 271 ~~~ik~~l~~~gPV~v~i~~~~f~~y~~Gi~~~~~c~~~~~HaV~iVGyg~~ 322 (373)
.+.|++.|.++.||.+.++..++ .|...-| .....+|.|+|+||+++
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~~l-py~~~~~----~~~~~~H~i~v~G~d~~ 124 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMYYL-PYRPNYY----KKHHADHYIVVYGYDEE 124 (317)
T ss_pred HHHHHHHHhCCCceEEEeccccC-CCCcccc----ccccCCcEEEEEEEeCC
Confidence 56889999877799999887654 2322211 11226899999999965
No 29
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=88.80 E-value=0.32 Score=38.24 Aligned_cols=12 Identities=33% Similarity=0.390 Sum_probs=7.9
Q ss_pred CcchhHHHHHHH
Q 017318 1 MGSKTVVLFLVS 12 (373)
Q Consensus 1 m~~~~~~~~~~~ 12 (373)
||||.+||+.|+
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 999865555444
No 30
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=87.66 E-value=0.77 Score=32.30 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=15.0
Q ss_pred CcchhHHHHHHHHHHHHHh
Q 017318 1 MGSKTVVLFLVSLVVFSAV 19 (373)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (373)
||+|++++.+|++.+.+.+
T Consensus 1 MA~Kl~vialLC~aLva~v 19 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIV 19 (65)
T ss_pred CcchhhHHHHHHHHHHHHH
Confidence 9999999888887666643
No 31
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=87.42 E-value=0.52 Score=35.51 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=18.6
Q ss_pred CcchhHHHHHHHHHHHHHhhc
Q 017318 1 MGSKTVVLFLVSLVVFSAVSS 21 (373)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (373)
|||++.+|.||++-++++.|+
T Consensus 1 MaRRlwiLslLAVtLtVALAA 21 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAA 21 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhc
Confidence 999999999999888888765
No 32
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.33 E-value=2.1 Score=37.36 Aligned_cols=47 Identities=21% Similarity=0.424 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhCCCeEEEEEccccccccCceecCCCCCCCCCeEEEEEEEeccCCCCCCCCCCCEEEEEcCCC
Q 017318 270 DEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWG 342 (373)
Q Consensus 270 ~~~~ik~~l~~~gPV~v~i~~~~f~~y~~Gi~~~~~c~~~~~HaV~iVGyg~~~~~~~~~~g~~ywiikNSWG 342 (373)
+..+|+..|.+..||.+-... |-. | .-|+|+|+||++. ++..-++||
T Consensus 122 sl~~ik~ql~kg~PV~iw~T~--~~~-----~--------s~H~v~itgyDk~-----------n~yynDpyG 168 (195)
T COG4990 122 SLSDIKGQLLKGRPVVIWVTN--FHS-----Y--------SIHSVLITGYDKY-----------NIYYNDPYG 168 (195)
T ss_pred cHHHHHHHHhcCCcEEEEEec--ccc-----c--------ceeeeEeeccccc-----------ceEeccccc
Confidence 688999999999999987654 211 1 2499999999875 566667775
No 33
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=76.83 E-value=38 Score=29.12 Aligned_cols=40 Identities=28% Similarity=0.372 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhCCCeEEEEEccccccccCceecCCCCCCCCCeEEEEEEEeccC
Q 017318 270 DEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAG 323 (373)
Q Consensus 270 ~~~~ik~~l~~~gPV~v~i~~~~f~~y~~Gi~~~~~c~~~~~HaV~iVGyg~~~ 323 (373)
..+.+...|.++||+-++..... +.-..|+++|.|-+.++
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P~--------------~~~~~H~~ViTGI~~dg 136 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAPG--------------DSWVAHASVITGIDGDG 136 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCCC--------------CcceeeEEEEEeecCCC
Confidence 47889999999999999865321 11246999999987653
No 34
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=68.55 E-value=17 Score=29.79 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=24.8
Q ss_pred HHHHHHhCCCeEEEEEccccccccCceecCCCCCCCCCeEEEEEEEe
Q 017318 274 IAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYG 320 (373)
Q Consensus 274 ik~~l~~~gPV~v~i~~~~f~~y~~Gi~~~~~c~~~~~HaV~iVGyg 320 (373)
+++.|....||.+.++.. . -....+|.|+|+||+
T Consensus 70 ~~~~l~~~~Pvi~~~~~~-------~------~~~~~gH~vVv~g~~ 103 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG-------V------SITPSGHAMVVIGYD 103 (141)
T ss_pred HHHHHHCCCeEEEEEecC-------c------ccCCCCeEEEEEEEc
Confidence 778888888999887641 0 012257999999998
No 35
>PF15240 Pro-rich: Proline-rich
Probab=51.15 E-value=9.7 Score=33.36 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHH
Q 017318 5 TVVLFLVSLVVFSA 18 (373)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (373)
|||||.++||++++
T Consensus 2 LlVLLSvALLALSS 15 (179)
T PF15240_consen 2 LLVLLSVALLALSS 15 (179)
T ss_pred hhHHHHHHHHHhhh
Confidence 45555555555544
No 36
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=50.03 E-value=21 Score=34.24 Aligned_cols=43 Identities=14% Similarity=0.345 Sum_probs=32.6
Q ss_pred CCeEEEEEEEeccCCCCCCCCCCCEEEEEcCCCC-CC-------------------------CCCcEEEEEcCC
Q 017318 310 LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGE-SW-------------------------GENGYYKICRGR 357 (373)
Q Consensus 310 ~~HaV~iVGyg~~~~~~~~~~g~~ywiikNSWG~-~W-------------------------Ge~GY~~i~r~~ 357 (373)
.+||=.|+++-... ..+.....+||.||. .| .++|-|||+..+
T Consensus 235 ~~HaY~Vl~~~~~~-----~~~~~lv~lrNPWg~~~w~G~ws~~~~~w~~~~~~~~~~~~~~~~dG~Fwm~~~d 303 (315)
T cd00044 235 KGHAYSVLDVREVQ-----EEGLRLLRLRNPWGVGEWWGGWSDDSSEWWVIDAERKKLLLSGKDDGEFWMSFED 303 (315)
T ss_pred cCcceEEeEEEEEc-----cCceEEEEecCCccCCCccCCCCCCCchhccChHHHHHhcCCCCCCCEEEEEhHH
Confidence 58999999997641 027789999999994 22 368999998763
No 37
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=37.62 E-value=1.7e+02 Score=25.72 Aligned_cols=51 Identities=35% Similarity=0.718 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCCCeEEEEEccccccccCceecCCCCCCCCCeEEEEEEEeccCCCCCCCCCCCEEEEEcCCCCCCC--CC
Q 017318 271 EDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWG--EN 348 (373)
Q Consensus 271 ~~~ik~~l~~~gPV~v~i~~~~f~~y~~Gi~~~~~c~~~~~HaV~iVGyg~~~~~~~~~~g~~ywiikNSWG~~WG--e~ 348 (373)
.+.|+..|.++.||.+.-... + .+||.+|=||..+ .||-+= || || .+
T Consensus 140 ~~~i~~el~~~rPV~~~g~~~------~-----------~GHawViDGy~~~----------~~~H~N--wG--W~G~~n 188 (192)
T PF01640_consen 140 MDMIRNELDNGRPVLYSGNSK------S-----------GGHAWVIDGYDSD----------GYFHCN--WG--WGGSSN 188 (192)
T ss_dssp HHHHHHHHHTT--EEEEEEET------T-----------EEEEEEEEEEESS----------SEEEEE---S--STTTT-
T ss_pred HHHHHHHHHcCCCEEEEEecC------C-----------CCeEEEEcCccCC----------CeEEEe--eC--ccCCCC
Confidence 357888888888998653211 0 1799999999644 466544 55 44 47
Q ss_pred cEEE
Q 017318 349 GYYK 352 (373)
Q Consensus 349 GY~~ 352 (373)
|||+
T Consensus 189 Gyy~ 192 (192)
T PF01640_consen 189 GYYR 192 (192)
T ss_dssp EEEE
T ss_pred CccC
Confidence 9985
No 38
>PF15284 PAGK: Phage-encoded virulence factor
Probab=31.57 E-value=27 Score=24.85 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHhhcCCcC
Q 017318 4 KTVVLFLVSLVVFSAVSSGTLI 25 (373)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~ 25 (373)
+.++|.++++|..+++|+.+..
T Consensus 5 ksifL~l~~~LsA~~FSasamA 26 (61)
T PF15284_consen 5 KSIFLALVFILSAAGFSASAMA 26 (61)
T ss_pred HHHHHHHHHHHHHhhhhHHHHH
Confidence 3455555555555555554443
No 39
>PF08048 RepA1_leader: Tap RepA1 leader peptide; InterPro: IPR012605 This entry represents of the RepA1 leader peptide known as Tap found in IncFII plasmids. The frequency of replication of IncFII plasmid NR1 during the cell division cycle is regulated by the control of the synthesis of the plasmid-specific replication initiation protein (RepA1). When RepA1 is synthesised, it binds to the plasmid replication origin (ori) and effects the assembly of a replication complex composed of host proteins that mediate the replication of the plasmid [, ]. The tap gene encodes a 24-amino acid peptide whose translation is required for the translation of repA.
Probab=29.73 E-value=66 Score=18.34 Aligned_cols=21 Identities=33% Similarity=0.399 Sum_probs=14.3
Q ss_pred CcchhHHHHHHHHHHHHHhhc
Q 017318 1 MGSKTVVLFLVSLVVFSAVSS 21 (373)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (373)
|-+|+..+.|..+|+.+.+|+
T Consensus 1 MlrK~Q~~FLc~lLL~CniSA 21 (25)
T PF08048_consen 1 MLRKVQYLFLCHLLLPCNISA 21 (25)
T ss_pred CchhHHHHHHHHHHhhhhccc
Confidence 778887777776666555554
No 40
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=24.57 E-value=81 Score=18.33 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHhh
Q 017318 6 VVLFLVSLVVFSAVS 20 (373)
Q Consensus 6 ~~~~~~~~~~~~~~~ 20 (373)
+++.+++++..+++|
T Consensus 10 il~~l~a~~~LagCs 24 (25)
T PF08139_consen 10 ILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHhhcc
Confidence 444444444444443
No 41
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=24.54 E-value=1.3e+02 Score=28.87 Aligned_cols=27 Identities=15% Similarity=0.409 Sum_probs=20.9
Q ss_pred CCeEEEEEEEeccCCCCCCCCCCC--EEEEEcCCCC
Q 017318 310 LDHGVLLVGYGSAGYAPIRLKEKP--YWIIKNSWGE 343 (373)
Q Consensus 310 ~~HaV~iVGyg~~~~~~~~~~g~~--ywiikNSWG~ 343 (373)
.+||=.|++...- ++.+ ...+||-||.
T Consensus 227 ~~HaYsVl~v~~~-------~~~~~~Ll~lrNPWg~ 255 (318)
T smart00230 227 KGHAYSVTDVREV-------QGRRQELLRLRNPWGQ 255 (318)
T ss_pred cCccEEEEEEEEE-------ecCCeEEEEEECCCCC
Confidence 5899999988754 3344 8999999993
No 42
>TIGR03475 tap_IncFII_lead RepA leader peptide Tap. This protein is a translated leader peptide that actis in the regulation of the expression of the plasmid replication protein RepA in incF2 group plasmids.
Probab=24.51 E-value=84 Score=18.10 Aligned_cols=21 Identities=33% Similarity=0.399 Sum_probs=13.8
Q ss_pred CcchhHHHHHHHHHHHHHhhc
Q 017318 1 MGSKTVVLFLVSLVVFSAVSS 21 (373)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (373)
|-+|..-+.|..+|+...+|+
T Consensus 1 M~rKvQ~~FLc~~LL~cniSA 21 (26)
T TIGR03475 1 MLRKVQYLFLCHLLLPCNISA 21 (26)
T ss_pred CchhHHHHHHHHHHhhhcccc
Confidence 677877776666555555554
No 43
>PRK09810 entericidin A; Provisional
Probab=21.12 E-value=1e+02 Score=20.24 Aligned_cols=14 Identities=29% Similarity=0.422 Sum_probs=6.2
Q ss_pred CcchhHHHHHHHHH
Q 017318 1 MGSKTVVLFLVSLV 14 (373)
Q Consensus 1 m~~~~~~~~~~~~~ 14 (373)
|-.+++++++++++
T Consensus 1 mMkk~~~l~~~~~~ 14 (41)
T PRK09810 1 MMKRLIVLVLLAST 14 (41)
T ss_pred ChHHHHHHHHHHHH
Confidence 33344454444443
No 44
>PRK03100 sec-independent translocase; Provisional
Probab=20.76 E-value=1.7e+02 Score=24.54 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=10.3
Q ss_pred CCccchHHHHHHHHHHhCc
Q 017318 51 NDLLGAEHHFSLFKKKFNK 69 (373)
Q Consensus 51 ~~~~~~~~~F~~f~~~~~K 69 (373)
..|+..-..+-+|+.++.+
T Consensus 24 krLP~~~r~lG~~vr~~R~ 42 (136)
T PRK03100 24 ERLPGAIRWTARALRQARD 42 (136)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3345555555666666644
No 45
>PF15588 Imm7: Immunity protein 7
Probab=20.63 E-value=4.1e+02 Score=21.35 Aligned_cols=34 Identities=38% Similarity=0.732 Sum_probs=24.6
Q ss_pred EEEEEEEeccCCCCCCCCCCCEEEEEcCC-----CCCCCCCcEE
Q 017318 313 GVLLVGYGSAGYAPIRLKEKPYWIIKNSW-----GESWGENGYY 351 (373)
Q Consensus 313 aV~iVGyg~~~~~~~~~~g~~ywiikNSW-----G~~WGe~GY~ 351 (373)
-|++||++++.+ +.+.|-|++.+- ...=|.+||+
T Consensus 17 ~v~~vG~ADd~~-----~~~~yiilQR~~~~de~D~~~~~d~~~ 55 (115)
T PF15588_consen 17 NVLMVGFADDED-----GPKEYIILQRSLEFDEQDEDLGSDGYY 55 (115)
T ss_pred cEEEEEEecCCC-----CCceEEEEEccCCCCCcccccCcCcEE
Confidence 399999998742 456799999964 3344568887
No 46
>PRK14745 RepA leader peptide Tap; Provisional
Probab=20.22 E-value=98 Score=17.72 Aligned_cols=21 Identities=38% Similarity=0.320 Sum_probs=13.7
Q ss_pred CcchhHHHHHHHHHHHHHhhc
Q 017318 1 MGSKTVVLFLVSLVVFSAVSS 21 (373)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (373)
|-||+..+++-.+++.+.+|+
T Consensus 1 mlrk~qylfl~hlllpcnisa 21 (26)
T PRK14745 1 MLRKFQYLFLWHLLLPCIVSA 21 (26)
T ss_pred ChHHHHHHHHHHHHhhccccc
Confidence 667777777666666655554
Done!