BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017319
(373 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LA32|LUL4_ARATH Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana
GN=LUL4 PE=2 SV=1
Length = 359
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 314 VEENAGGIEHNCCVCMVRHKGAAFIPCGH-TFCRLCSRELWVQRGNCPLCNGFILEILDI 372
++E+ G E C +CM K A +PC H C C++EL +Q CP+C I E+L+I
Sbjct: 293 LDESGSGTE--CVICMTEAKDTAVLPCRHLCMCSDCAKELRLQSNKCPICRQPIEELLEI 350
>sp|O76064|RNF8_HUMAN E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1
Length = 485
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 104/259 (40%), Gaps = 22/259 (8%)
Query: 115 GELASQLEDNRGAPPQFARRPSSKV-ASSSPG--PTQSSHHEDSPEGEGSPTRSSRQPQL 171
GE+AS DN P A PS A PG HHE + RS + ++
Sbjct: 193 GEVASTPSDNLD-PKLTALEPSKTTGAPIYPGFPKVTEVHHEQKASNSSASQRSLQMFKV 251
Query: 172 SRHNSTRVEAASNTVSEDNSVDPFDVAREGTRRLAVVLAQE-----RQLSAREAVAAQEA 226
+ R++ E ++ ++G + V + QE QL A +A
Sbjct: 252 TMSRILRLKIQMQEKHEA-VMNVKKQTQKGNSKKVVQMEQELQDLQSQLCAEQAQQQARV 310
Query: 227 AEAEAAAAEAEAEAEAEASVQVEAEAEAAEPVQPRQPRMSLMDLLE--ETDRQMGLEGSR 284
+ E E E + Q E + + + Q Q +LM+ L + D + ++
Sbjct: 311 EQLEKTFQEEEQHLQGLEIAQGEKDLKQ-QLAQALQEHWALMEELNRSKKDFEAIIQAKN 369
Query: 285 YAVGEDEDEEEEDEAEAEAEGEYEEEGDDVEENAGGIEHNCCVCMVRHKGAAFIPCGHTF 344
+ + ++E+E+ +A+ E E +DV EN E C +C A + C H+F
Sbjct: 370 KELEQTKEEKEKMQAQKE---EVLSHMNDVLEN----ELQCIICSEYFIEAVTLNCAHSF 422
Query: 345 CRLCSRELWVQRG-NCPLC 362
C C E W++R CP+C
Sbjct: 423 CSYCINE-WMKRKIECPIC 440
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 120/280 (42%), Gaps = 19/280 (6%)
Query: 95 SNPRSQLIRRS---SVRFQTNPAGELASQLEDNRGAPPQFARRPSSKV--ASSSPGPTQS 149
SN +S++ + S + +++ G++ASQ + P + PS K A +PGP +
Sbjct: 170 SNLKSKISKLSCEPGQQVKSHGKGKVASQPSEYLD-PKLTSFEPSVKTTGAHVNPGPAKV 228
Query: 150 SHHEDSPEGEGSPTRSSRQPQLSRHNSTRVEAASNTVSEDNSVDPFDVARE---GTRRLA 206
+ +P+ S +L + +R+ T ++ V +V ++ G+ +
Sbjct: 229 IELLRKKKKASNPSASQSSLELFKVTMSRI-LMLKTQMQEKQVAVLNVKKQTKKGSSKKI 287
Query: 207 VVLAQERQLSAREAVAAQEAAEAEAAAAEAEAEAEAEASVQVEAEAEAAEPVQPR-QPRM 265
V + QE Q + A Q +A E + E + +E E + Q Q
Sbjct: 288 VKMEQELQDLQSQLCAEQAQQQARVEQLEKTIQEEQQHLEGLEKEEGEEDLKQQLAQALQ 347
Query: 266 SLMDLLEETDR-QMGLEGSRYAVGEDEDEEEEDEAEAEAEGE-YEEEGDDVEENAGGIEH 323
L+EE +R + E A ++ ++ +E++ + +A+ E +DV EN E
Sbjct: 348 EYRSLVEELNRSKKNFEAIIQAKDKELEQTKEEKEKVQAQKEEVLSHMNDVLEN----EL 403
Query: 324 NCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRG-NCPLC 362
C +C A + C H+FC C E W++R CP+C
Sbjct: 404 QCIICSEYFVEAVTLNCAHSFCSYCINE-WMKRKVECPIC 442
>sp|Q8VC56|RNF8_MOUSE E3 ubiquitin-protein ligase RNF8 OS=Mus musculus GN=Rnf8 PE=1 SV=1
Length = 488
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 20/190 (10%)
Query: 184 NTVSEDNSVDPFDVAREGTRRLAV--VLAQERQLSAREAVAAQEAAEAEAAAAEAEAEAE 241
T ++ + +V R+ TR+ + ++ E++L ++ E A+ +A + E +
Sbjct: 263 KTQMQEKQIAVLNVKRQ-TRKGSSKKIVRMEKELRNLQSQLYAEQAQQQARVEQLEKTFQ 321
Query: 242 AEASVQVEAEAEAAEP------VQPRQPRMSLMDLLE--ETDRQMGLEGSRYAVGEDEDE 293
EA E E E VQ Q +LM+ L + D + ++ + ++ +
Sbjct: 322 EEAHYLQGLEKEQGECDLKQQLVQALQEHQALMEELNCSKKDFEKIIQAKNKEL--EQTK 379
Query: 294 EEEDEAEAEAEGEYEEEGDDVEENAGGIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELW 353
EE+D+ +A+ E E +D+ EN E C +C A + C H+FC C E W
Sbjct: 380 EEKDKVQAQKE-EVLSHMNDLLEN----ELQCIICSEYFIEAVTLNCAHSFCSFCINE-W 433
Query: 354 VQRG-NCPLC 362
++R CP+C
Sbjct: 434 MKRKVECPIC 443
>sp|Q95M71|BIRC8_GORGO Baculoviral IAP repeat-containing protein 8 OS=Gorilla gorilla
gorilla GN=BIRC8 PE=2 SV=1
Length = 236
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 322 EHNCCVCMVRHKGAAFIPCGHTF-CRLCSRELWVQRGNCPLCNGFI 366
E C +CM RH FIPCGH C+ C+ + CP+CN I
Sbjct: 186 EKLCKICMDRHIAVVFIPCGHLVTCKQCAEAV----DRCPMCNAVI 227
>sp|Q4KLN8|RNF8_RAT E3 ubiquitin-protein ligase RNF8 OS=Rattus norvegicus GN=Rnf8 PE=2
SV=1
Length = 487
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 161 SPTRSSRQPQLSRHNSTRVEAASNTVSEDNSVDPFDV---AREGTRRLAVVLAQE----- 212
SP+ S +L + +R+ T ++ + +V AR+G+ + V + +E
Sbjct: 240 SPSASQSSLELFKMTMSRM-LKLKTQMQEKQIAVLNVKRQARKGSSKKVVRMEKELRDLQ 298
Query: 213 RQLSAREAVAAQEAAEAEAAAAEAEAEAEAEASVQVEAEAEAAEPVQPRQPRMSLMDLLE 272
QL A +A + E E E + Q E + + ++ R L+E
Sbjct: 299 SQLYAEQAQQQARVEQLEKTFQEEEQHLQGLEKEQGECDLKQQLLQALQEHRA----LME 354
Query: 273 ETDR-QMGLEGSRYAVGEDED--EEEEDEAEAEAEGEYEEEGDDVEENAGGIEHNCCVCM 329
E DR + E A ++ + +EE+D+ +A+ E E +DV EN E C +C
Sbjct: 355 ELDRSKKDFEKIIQAKNKELERTKEEKDKVQAQKE-EVLSHMNDVLEN----ELQCIICS 409
Query: 330 VRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFI 366
A + C H+FC C E ++ CP+C I
Sbjct: 410 EYFIEAVTLNCAHSFCSFCISEWMKRKVECPICRKDI 446
>sp|Q9D4H7|LONF3_MOUSE LON peptidase N-terminal domain and RING finger protein 3 OS=Mus
musculus GN=Lonrf3 PE=2 SV=1
Length = 753
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 325 CCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILEIL 370
C +CM PCGHTFC C CPLC +L+ L
Sbjct: 461 CSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDVLLQCL 506
>sp|Q6R7C4|IAP4_OSHVF Putative apoptosis inhibitor ORF106 OS=Ostreid herpesvirus 1
(isolate France) GN=ORF106 PE=4 SV=1
Length = 465
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 325 CCVCMVRHKGAAFIPCGHTF-CRLCSRELWV---QRGNCPLCNGFILEILDIF 373
C C R AFIPCGH F C +C+ E++ ++ CP+C + ++ IF
Sbjct: 405 CKACYERKADIAFIPCGHVFSCNICTMEMFASYKKKKRCPMCRVHVEKVQKIF 457
>sp|Q7ZX20|RNF8A_XENLA E3 ubiquitin-protein ligase RNF8-A OS=Xenopus laevis GN=rnf8-a PE=2
SV=1
Length = 540
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 14/162 (8%)
Query: 208 VLAQERQLSAREAVAAQEAAEAEAAAAEAEAEAEAE-----ASVQVEAEAEAAEPVQPRQ 262
VLA +++L A + E + + E + E E + QVE E + Q Q
Sbjct: 265 VLAVQKELRALHNHLSNEQEQHMQSVKELKEIFEEEQQSMGSRKQVEEEHLKEQLAQALQ 324
Query: 263 PRMSLMDLLE--ETDRQMGLEGSRYAVGEDEDEEEEDEAEAEAEGEYEEEGDDVEENAGG 320
LM L + D + +E + E ++E+E+ A+ E E +DV +N
Sbjct: 325 EHTQLMQELNRSKNDFEQIIEAKNKELQETKEEKEKVFAQKE---EVLNHMNDVLDN--- 378
Query: 321 IEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLC 362
E C +C A + C H+FC C + ++ CP+C
Sbjct: 379 -ELQCIICSEHFIEAVTLNCAHSFCSYCIKSWKKRKEECPIC 419
>sp|Q5R4I2|RNF8_PONAB E3 ubiquitin-protein ligase RNF8 OS=Pongo abelii GN=RNF8 PE=2 SV=1
Length = 486
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 290 DEDEEEEDEAEAEAEGEYEEEGDDVEENAGGIEHNCCVCMVRHKGAAFIPCGHTFCRLCS 349
++ +EE+++ +A+ E E +DV EN E C +C A + C H+FC C
Sbjct: 374 EQTKEEKEKVQAQKE-EVLSHMNDVLEN----ELQCIICSEYFIEAVTLNCAHSFCSYCI 428
Query: 350 RELWVQRG-NCPLC 362
E W++R CP+C
Sbjct: 429 NE-WMKRKIECPIC 441
>sp|Q8RX22|MIP1_ARATH MND1-interacting protein 1 OS=Arabidopsis thaliana GN=MIP1 PE=1
SV=1
Length = 711
Score = 39.3 bits (90), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 309 EEGDDVE---ENAGGIEHNCCVCMVRHKGAAFIPCGH-TFCRLCSRELWV-----QRGNC 359
EE D +E +N + C +CM F+PC H C CS + + C
Sbjct: 634 EEIDKLEGSYDNEANYDRECIICMKDEVSVVFLPCAHQVVCGSCSDSFFASNNGGSKVTC 693
Query: 360 PLCNGFILEILDIF 373
P C G + + + IF
Sbjct: 694 PCCRGLVQQRIRIF 707
>sp|A2AWP0|BIRC7_MOUSE Baculoviral IAP repeat-containing protein 7 OS=Mus musculus
GN=Birc7 PE=2 SV=1
Length = 285
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 300 EAEAEGEYEEEGDDVEENAGGI--EHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRG 357
E + E E DV+E + E C VC+ R F+PCGH C C+ L +
Sbjct: 212 ETQPEDVSEPGAKDVQEQLRQLQEERRCKVCLDRAVSIVFVPCGHFVCTECAPNLQL--- 268
Query: 358 NCPLCNGFILEILDIF 373
CP+C I + F
Sbjct: 269 -CPICRVPICSCVRTF 283
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,745,068
Number of Sequences: 539616
Number of extensions: 6370904
Number of successful extensions: 78971
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 1838
Number of HSP's that attempted gapping in prelim test: 53164
Number of HSP's gapped (non-prelim): 13965
length of query: 373
length of database: 191,569,459
effective HSP length: 119
effective length of query: 254
effective length of database: 127,355,155
effective search space: 32348209370
effective search space used: 32348209370
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)