Query 017319
Match_columns 373
No_of_seqs 196 out of 1428
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 07:31:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03208 E3 ubiquitin-protein 99.0 1.3E-10 2.9E-15 107.9 4.5 51 318-368 14-80 (193)
2 KOG0823 Predicted E3 ubiquitin 99.0 2.3E-10 5E-15 108.5 3.5 55 319-373 44-103 (230)
3 PF13920 zf-C3HC4_3: Zinc fing 98.9 5.5E-10 1.2E-14 81.7 2.8 48 322-369 2-50 (50)
4 PF15227 zf-C3HC4_4: zinc fing 98.9 1.2E-09 2.6E-14 78.3 2.9 38 325-362 1-42 (42)
5 PF13639 zf-RING_2: Ring finge 98.8 2.4E-09 5.1E-14 76.3 2.2 40 324-363 2-44 (44)
6 PF13923 zf-C3HC4_2: Zinc fing 98.8 4.1E-09 8.8E-14 73.5 2.6 38 325-362 1-39 (39)
7 KOG0320 Predicted E3 ubiquitin 98.8 3.7E-09 7.9E-14 97.2 3.0 53 321-373 130-186 (187)
8 KOG0317 Predicted E3 ubiquitin 98.8 3.6E-09 7.9E-14 103.2 3.1 50 319-368 236-285 (293)
9 PHA02929 N1R/p28-like protein; 98.8 4.5E-09 9.8E-14 100.6 3.4 50 322-371 174-231 (238)
10 smart00504 Ubox Modified RING 98.7 8.6E-09 1.9E-13 77.3 3.7 45 323-367 2-46 (63)
11 TIGR00599 rad18 DNA repair pro 98.6 1.8E-08 4E-13 102.6 3.1 50 319-368 23-72 (397)
12 KOG0287 Postreplication repair 98.6 1.7E-08 3.7E-13 100.6 1.6 48 321-368 22-69 (442)
13 cd00162 RING RING-finger (Real 98.5 5.8E-08 1.3E-12 66.3 3.2 43 324-366 1-45 (45)
14 PF00097 zf-C3HC4: Zinc finger 98.5 4.7E-08 1E-12 68.1 2.6 38 325-362 1-41 (41)
15 KOG4265 Predicted E3 ubiquitin 98.5 3.8E-08 8.2E-13 98.4 2.8 85 276-373 257-342 (349)
16 PHA02926 zinc finger-like prot 98.5 7.2E-08 1.6E-12 91.7 2.9 51 320-370 168-233 (242)
17 smart00184 RING Ring finger. E 98.4 2E-07 4.4E-12 61.4 3.6 38 325-362 1-39 (39)
18 KOG2164 Predicted E3 ubiquitin 98.4 9E-08 2E-12 99.4 2.3 47 322-368 186-237 (513)
19 COG5432 RAD18 RING-finger-cont 98.4 1E-07 2.2E-12 93.7 2.4 49 321-369 24-72 (391)
20 KOG4172 Predicted E3 ubiquitin 98.4 9.1E-08 2E-12 73.2 0.9 51 323-373 8-60 (62)
21 PF04564 U-box: U-box domain; 98.3 3.5E-07 7.7E-12 72.1 3.0 48 321-368 3-51 (73)
22 KOG2177 Predicted E3 ubiquitin 98.3 2E-07 4.4E-12 83.5 1.6 44 320-363 11-54 (386)
23 COG5574 PEX10 RING-finger-cont 98.3 2.6E-07 5.5E-12 89.5 2.3 48 320-367 213-262 (271)
24 PF12678 zf-rbx1: RING-H2 zinc 98.3 5E-07 1.1E-11 71.6 3.3 40 324-363 21-73 (73)
25 PF13445 zf-RING_UBOX: RING-ty 98.3 3.7E-07 8E-12 66.2 2.2 35 325-360 1-43 (43)
26 PF14634 zf-RING_5: zinc-RING 98.3 5.4E-07 1.2E-11 64.6 2.8 41 324-364 1-44 (44)
27 KOG4275 Predicted E3 ubiquitin 98.2 2.1E-07 4.6E-12 91.4 -0.2 49 321-373 299-348 (350)
28 KOG4628 Predicted E3 ubiquitin 98.2 4.9E-07 1.1E-11 90.8 2.3 47 323-369 230-280 (348)
29 KOG0978 E3 ubiquitin ligase in 98.1 7.4E-07 1.6E-11 96.0 0.7 53 321-373 642-697 (698)
30 COG5243 HRD1 HRD ubiquitin lig 98.1 1.5E-06 3.2E-11 87.9 2.7 48 319-366 284-344 (491)
31 COG5540 RING-finger-containing 98.1 1.9E-06 4.1E-11 85.3 2.6 46 322-367 323-372 (374)
32 KOG0802 E3 ubiquitin ligase [P 98.0 2.2E-06 4.7E-11 90.2 2.3 46 321-366 290-340 (543)
33 KOG0311 Predicted E3 ubiquitin 97.8 2.6E-06 5.7E-11 85.5 -1.1 51 318-368 39-91 (381)
34 KOG2660 Locus-specific chromos 97.8 4.9E-06 1.1E-10 82.8 0.7 52 318-369 11-63 (331)
35 KOG4159 Predicted E3 ubiquitin 97.8 1.1E-05 2.3E-10 82.7 1.9 50 320-369 82-131 (398)
36 KOG1571 Predicted E3 ubiquitin 97.7 1.7E-05 3.8E-10 79.7 2.8 52 319-373 302-353 (355)
37 COG5152 Uncharacterized conser 97.6 2.4E-05 5.3E-10 73.8 1.8 50 320-369 194-243 (259)
38 PF12861 zf-Apc11: Anaphase-pr 97.5 8.7E-05 1.9E-09 61.3 3.0 46 322-367 21-82 (85)
39 PF14835 zf-RING_6: zf-RING of 97.4 3.1E-05 6.6E-10 61.0 -0.1 43 322-366 7-50 (65)
40 KOG1813 Predicted E3 ubiquitin 97.4 5E-05 1.1E-09 75.0 0.4 50 321-370 240-289 (313)
41 KOG1785 Tyrosine kinase negati 97.3 9.1E-05 2E-09 75.9 1.4 49 322-370 369-419 (563)
42 KOG1039 Predicted E3 ubiquitin 97.3 0.00012 2.6E-09 73.8 2.2 51 320-370 159-224 (344)
43 KOG0825 PHD Zn-finger protein 97.2 8.2E-05 1.8E-09 81.1 -0.3 52 320-371 121-175 (1134)
44 KOG4692 Predicted E3 ubiquitin 96.9 0.00047 1E-08 69.9 2.5 51 318-368 418-468 (489)
45 KOG0297 TNF receptor-associate 96.9 0.00036 7.8E-09 71.2 1.6 50 320-369 19-69 (391)
46 KOG0828 Predicted E3 ubiquitin 96.9 0.00037 8E-09 73.0 1.6 48 321-368 570-635 (636)
47 KOG2879 Predicted E3 ubiquitin 96.8 0.00082 1.8E-08 66.0 3.2 52 317-368 234-288 (298)
48 PF11793 FANCL_C: FANCL C-term 96.6 0.00046 9.9E-09 54.5 -0.3 46 322-367 2-66 (70)
49 KOG0804 Cytoplasmic Zn-finger 96.6 0.00077 1.7E-08 69.9 1.1 49 317-367 170-222 (493)
50 PF11789 zf-Nse: Zinc-finger o 96.5 0.0013 2.8E-08 50.3 1.8 41 321-361 10-53 (57)
51 COG5219 Uncharacterized conser 96.4 0.0011 2.4E-08 73.8 1.1 47 321-367 1468-1523(1525)
52 COG5222 Uncharacterized conser 96.4 0.0017 3.6E-08 64.9 1.8 44 321-364 273-318 (427)
53 smart00744 RINGv The RING-vari 96.2 0.0051 1.1E-07 45.5 3.1 40 324-363 1-49 (49)
54 KOG1734 Predicted RING-contain 96.0 0.0029 6.2E-08 62.4 1.4 49 319-367 221-281 (328)
55 COG5236 Uncharacterized conser 95.8 0.007 1.5E-07 61.5 3.2 48 323-370 62-111 (493)
56 KOG0826 Predicted E3 ubiquitin 95.7 0.0059 1.3E-07 61.4 2.4 54 320-373 298-354 (357)
57 COG5194 APC11 Component of SCF 95.7 0.0093 2E-07 49.2 3.0 29 339-367 53-81 (88)
58 KOG1493 Anaphase-promoting com 95.5 0.0035 7.6E-08 51.3 0.0 44 324-367 22-81 (84)
59 KOG3039 Uncharacterized conser 95.5 0.0078 1.7E-07 58.8 2.2 49 320-368 219-271 (303)
60 PF04641 Rtf2: Rtf2 RING-finge 95.4 0.011 2.5E-07 57.0 3.0 49 319-368 110-162 (260)
61 PF14447 Prok-RING_4: Prokaryo 95.2 0.0083 1.8E-07 46.0 1.0 45 321-367 6-50 (55)
62 KOG1002 Nucleotide excision re 95.1 0.0084 1.8E-07 63.7 1.3 46 321-366 535-585 (791)
63 KOG1100 Predicted E3 ubiquitin 95.1 0.0077 1.7E-07 56.9 0.7 45 325-373 161-206 (207)
64 PF14570 zf-RING_4: RING/Ubox 95.0 0.014 3E-07 43.6 1.8 42 325-366 1-47 (48)
65 KOG1001 Helicase-like transcri 94.8 0.014 3E-07 63.8 1.9 45 323-368 455-501 (674)
66 KOG1814 Predicted E3 ubiquitin 94.7 0.018 3.8E-07 59.6 2.1 46 318-363 180-236 (445)
67 KOG2930 SCF ubiquitin ligase, 94.6 0.021 4.5E-07 49.2 2.0 27 339-365 80-106 (114)
68 KOG3002 Zn finger protein [Gen 94.2 0.027 5.9E-07 56.1 2.1 47 319-369 45-93 (299)
69 KOG1428 Inhibitor of type V ad 94.0 0.035 7.7E-07 64.7 2.8 52 318-369 3482-3546(3738)
70 KOG2932 E3 ubiquitin ligase in 93.3 0.032 7E-07 56.1 1.0 47 322-370 90-137 (389)
71 PF10272 Tmpp129: Putative tra 93.2 0.14 3.1E-06 52.3 5.4 26 263-288 240-265 (358)
72 PF03854 zf-P11: P-11 zinc fin 92.2 0.055 1.2E-06 40.7 0.7 46 323-370 3-49 (50)
73 KOG4445 Uncharacterized conser 92.2 0.044 9.6E-07 54.9 0.2 46 322-367 115-186 (368)
74 KOG2817 Predicted E3 ubiquitin 91.7 0.12 2.6E-06 53.2 2.7 45 321-365 333-383 (394)
75 KOG1941 Acetylcholine receptor 91.3 0.079 1.7E-06 54.8 0.9 45 321-365 364-414 (518)
76 COG5175 MOT2 Transcriptional r 90.9 0.14 3.1E-06 52.2 2.2 44 324-367 16-64 (480)
77 PF05290 Baculo_IE-1: Baculovi 90.8 0.16 3.4E-06 45.6 2.2 48 321-368 79-133 (140)
78 PF10367 Vps39_2: Vacuolar sor 90.4 0.11 2.3E-06 42.3 0.7 31 320-350 76-108 (109)
79 KOG2114 Vacuolar assembly/sort 90.3 0.13 2.7E-06 57.5 1.4 48 321-371 839-887 (933)
80 PHA03096 p28-like protein; Pro 89.9 0.17 3.7E-06 50.2 1.8 44 323-366 179-236 (284)
81 KOG1940 Zn-finger protein [Gen 89.7 0.15 3.2E-06 50.6 1.1 47 321-368 157-207 (276)
82 COG5220 TFB3 Cdk activating ki 89.7 0.15 3.2E-06 50.0 1.1 47 321-367 9-64 (314)
83 KOG2034 Vacuolar sorting prote 89.6 0.22 4.7E-06 55.9 2.5 36 320-355 815-852 (911)
84 KOG3970 Predicted E3 ubiquitin 89.3 0.26 5.7E-06 47.9 2.5 44 324-367 52-105 (299)
85 PF05883 Baculo_RING: Baculovi 89.1 0.23 5E-06 44.5 1.8 36 322-357 26-70 (134)
86 KOG0298 DEAD box-containing he 89.0 0.13 2.9E-06 59.5 0.3 47 320-366 1151-1198(1394)
87 KOG3268 Predicted E3 ubiquitin 88.6 0.28 6E-06 46.3 2.1 46 324-369 167-230 (234)
88 KOG3161 Predicted E3 ubiquitin 88.5 0.2 4.3E-06 54.7 1.2 38 321-360 10-51 (861)
89 KOG3579 Predicted E3 ubiquitin 88.2 0.22 4.7E-06 49.8 1.2 37 320-356 266-306 (352)
90 KOG1645 RING-finger-containing 87.5 0.27 5.9E-06 51.1 1.4 30 336-365 23-54 (463)
91 KOG4362 Transcriptional regula 86.0 0.2 4.3E-06 55.0 -0.5 46 321-366 20-68 (684)
92 PF08746 zf-RING-like: RING-li 83.5 1 2.2E-05 32.5 2.4 38 325-362 1-43 (43)
93 KOG4185 Predicted E3 ubiquitin 82.5 0.74 1.6E-05 44.6 1.8 33 334-366 21-54 (296)
94 PHA02825 LAP/PHD finger-like p 82.4 1.3 2.9E-05 40.8 3.3 46 321-367 7-59 (162)
95 COG5109 Uncharacterized conser 81.5 0.97 2.1E-05 45.9 2.2 45 321-365 335-385 (396)
96 PHA02862 5L protein; Provision 78.6 1.9 4.2E-05 39.4 3.0 44 323-367 3-53 (156)
97 PF02891 zf-MIZ: MIZ/SP-RING z 78.5 2.4 5.1E-05 31.5 3.0 43 323-365 3-50 (50)
98 PF04216 FdhE: Protein involve 77.4 0.45 9.8E-06 46.5 -1.5 51 320-370 170-225 (290)
99 KOG1952 Transcription factor N 77.3 1.4 3E-05 49.6 2.0 48 320-367 189-247 (950)
100 KOG1812 Predicted E3 ubiquitin 74.6 1.4 3.1E-05 45.2 1.2 36 321-356 145-184 (384)
101 KOG3039 Uncharacterized conser 74.5 2.2 4.8E-05 42.2 2.4 35 320-354 41-75 (303)
102 KOG1815 Predicted E3 ubiquitin 73.3 2.2 4.8E-05 44.4 2.2 37 320-356 68-105 (444)
103 KOG0825 PHD Zn-finger protein 72.5 2.5 5.4E-05 47.5 2.4 49 323-371 97-158 (1134)
104 KOG2113 Predicted RNA binding 71.9 2.4 5.2E-05 43.1 2.0 52 319-372 340-392 (394)
105 TIGR01562 FdhE formate dehydro 63.8 1.7 3.6E-05 43.7 -0.9 45 321-365 183-233 (305)
106 PF12906 RINGv: RING-variant d 63.7 5.2 0.00011 29.3 1.9 38 325-362 1-47 (47)
107 COG5183 SSM4 Protein involved 62.9 6.1 0.00013 44.8 3.0 46 321-366 11-65 (1175)
108 KOG2068 MOT2 transcription fac 62.5 4.6 0.0001 41.1 1.9 48 321-368 248-299 (327)
109 KOG3899 Uncharacterized conser 61.6 4.7 0.0001 40.8 1.7 27 340-366 325-364 (381)
110 KOG3113 Uncharacterized conser 60.8 6.4 0.00014 39.1 2.4 48 319-368 108-159 (293)
111 PRK03564 formate dehydrogenase 59.1 3.5 7.7E-05 41.5 0.4 44 321-364 186-234 (309)
112 KOG0309 Conserved WD40 repeat- 58.1 5.9 0.00013 44.6 1.9 39 323-361 1029-1069(1081)
113 KOG3842 Adaptor protein Pellin 57.4 9.2 0.0002 39.2 3.0 47 321-367 340-414 (429)
114 PF04710 Pellino: Pellino; In 57.3 3.5 7.6E-05 43.0 0.0 47 322-368 328-402 (416)
115 KOG0824 Predicted E3 ubiquitin 54.5 3.7 8E-05 41.5 -0.3 53 318-370 101-154 (324)
116 PF10235 Cript: Microtubule-as 53.3 5.8 0.00013 33.4 0.7 37 322-367 44-80 (90)
117 KOG1812 Predicted E3 ubiquitin 52.4 7.3 0.00016 40.2 1.4 42 321-362 305-351 (384)
118 KOG0269 WD40 repeat-containing 50.6 13 0.00028 41.8 3.0 45 322-366 779-827 (839)
119 PF10146 zf-C4H2: Zinc finger- 49.4 10 0.00022 36.7 1.8 24 344-367 196-219 (230)
120 KOG2789 Putative Zn-finger pro 48.6 6.6 0.00014 41.2 0.4 35 321-355 73-109 (482)
121 KOG0827 Predicted E3 ubiquitin 43.4 3.4 7.4E-05 43.1 -2.6 48 321-368 195-246 (465)
122 PF07191 zinc-ribbons_6: zinc- 43.0 1.8 3.9E-05 34.9 -3.7 41 323-368 2-42 (70)
123 KOG3053 Uncharacterized conser 40.3 17 0.00036 36.3 1.7 47 321-367 19-82 (293)
124 KOG4718 Non-SMC (structural ma 38.1 18 0.00039 35.1 1.5 46 322-367 181-227 (235)
125 KOG4451 Uncharacterized conser 36.7 21 0.00045 35.2 1.7 27 341-367 248-274 (286)
126 KOG4185 Predicted E3 ubiquitin 36.6 7.1 0.00015 37.9 -1.5 44 322-365 207-265 (296)
127 PF06844 DUF1244: Protein of u 36.0 21 0.00045 28.8 1.3 13 343-355 11-23 (68)
128 KOG2807 RNA polymerase II tran 32.2 25 0.00053 36.3 1.5 25 339-363 350-374 (378)
129 KOG2113 Predicted RNA binding 32.1 15 0.00034 37.5 0.1 49 321-369 135-185 (394)
130 PF07975 C1_4: TFIIH C1-like d 31.6 30 0.00065 26.3 1.5 25 339-363 26-50 (51)
131 PF04710 Pellino: Pellino; In 29.1 18 0.0004 37.9 0.0 42 322-366 277-338 (416)
132 PF14569 zf-UDP: Zinc-binding 28.8 47 0.001 27.6 2.3 48 321-368 8-63 (80)
133 PF06906 DUF1272: Protein of u 27.0 44 0.00095 26.1 1.7 43 324-368 7-53 (57)
134 PLN02189 cellulose synthase 26.3 45 0.00097 38.9 2.4 47 321-367 33-87 (1040)
135 KOG4218 Nuclear hormone recept 25.8 47 0.001 34.7 2.2 9 357-365 68-76 (475)
136 COG3058 FdhE Uncharacterized p 25.3 42 0.00092 33.9 1.7 44 321-364 184-233 (308)
137 COG3813 Uncharacterized protei 24.9 48 0.001 27.4 1.7 25 341-367 28-52 (84)
138 KOG1609 Protein involved in mR 24.7 71 0.0015 30.6 3.1 46 322-367 78-134 (323)
139 PF14353 CpXC: CpXC protein 24.4 53 0.0011 28.1 2.0 45 323-367 2-49 (128)
140 PF07800 DUF1644: Protein of u 24.3 57 0.0012 30.3 2.3 15 358-372 82-96 (162)
141 PF05605 zf-Di19: Drought indu 24.0 48 0.0011 24.4 1.5 39 322-367 2-42 (54)
142 PRK04023 DNA polymerase II lar 23.8 33 0.00071 40.0 0.8 46 321-368 625-675 (1121)
143 KOG1815 Predicted E3 ubiquitin 23.7 32 0.00069 35.9 0.6 20 335-354 179-198 (444)
144 KOG1356 Putative transcription 23.7 30 0.00065 39.4 0.4 49 319-367 226-282 (889)
145 PLN02638 cellulose synthase A 23.5 58 0.0012 38.2 2.6 47 321-367 16-70 (1079)
146 KOG1829 Uncharacterized conser 23.4 24 0.00052 38.6 -0.4 21 339-362 536-556 (580)
147 PF02061 Lambda_CIII: Lambda P 23.4 61 0.0013 24.0 1.8 27 30-66 14-40 (45)
148 COG4647 AcxC Acetone carboxyla 23.2 41 0.00089 30.6 1.1 22 326-347 61-82 (165)
149 KOG0801 Predicted E3 ubiquitin 22.3 29 0.00064 32.6 0.0 25 321-345 176-203 (205)
150 smart00647 IBR In Between Ring 22.0 19 0.00042 26.4 -1.0 15 339-353 45-59 (64)
151 PLN02436 cellulose synthase A 21.9 54 0.0012 38.5 2.0 47 321-367 35-89 (1094)
152 PLN02400 cellulose synthase 21.3 48 0.001 38.9 1.4 46 321-367 35-89 (1085)
153 COG3492 Uncharacterized protei 21.2 52 0.0011 28.2 1.3 14 343-356 42-55 (104)
154 PF01363 FYVE: FYVE zinc finge 21.0 29 0.00063 26.4 -0.2 31 323-353 10-44 (69)
155 PF09538 FYDLN_acid: Protein o 20.9 53 0.0012 28.3 1.3 15 319-333 6-20 (108)
156 KOG3842 Adaptor protein Pellin 20.5 36 0.00077 35.1 0.2 31 336-366 318-351 (429)
157 KOG2169 Zn-finger transcriptio 20.5 70 0.0015 35.3 2.4 51 317-367 301-356 (636)
No 1
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.05 E-value=1.3e-10 Score=107.87 Aligned_cols=51 Identities=25% Similarity=0.696 Sum_probs=43.6
Q ss_pred cCCCccccccccccccccEEeccCCcchHhHHHHHHhc----------------CCCCcccccchhh
Q 017319 318 AGGIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQ----------------RGNCPLCNGFILE 368 (373)
Q Consensus 318 ~~~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~----------------s~~CPlCRa~i~e 368 (373)
.....+.|+||++.+.++++++|||.||+.||..|+.. ...||+||..+..
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 33456889999999999999999999999999999752 2479999998864
No 2
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.3e-10 Score=108.49 Aligned_cols=55 Identities=25% Similarity=0.689 Sum_probs=47.9
Q ss_pred CCCccccccccccccccEEeccCCcchHhHHHHHHhcC---CCCcccccchh--hhhccC
Q 017319 319 GGIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQR---GNCPLCNGFIL--EILDIF 373 (373)
Q Consensus 319 ~~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s---~~CPlCRa~i~--evL~IF 373 (373)
....+.|.||++..++|+++.|||.||+.||.+|+... ..||+|+..+. +++.||
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 45679999999999999999999999999999999866 45999998776 666665
No 3
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.93 E-value=5.5e-10 Score=81.65 Aligned_cols=48 Identities=29% Similarity=0.919 Sum_probs=42.4
Q ss_pred ccccccccccccccEEeccCCc-chHhHHHHHHhcCCCCcccccchhhh
Q 017319 322 EHNCCVCMVRHKGAAFIPCGHT-FCRLCSRELWVQRGNCPLCNGFILEI 369 (373)
Q Consensus 322 ~l~CpICle~~~~pv~LPCGH~-FC~sCI~rwlr~s~~CPlCRa~i~ev 369 (373)
+..|.||++...+.+++||||. ||..|+.+|+.....||+||.++..+
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 3679999999999999999999 99999999999889999999998753
No 4
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.88 E-value=1.2e-09 Score=78.30 Aligned_cols=38 Identities=42% Similarity=1.135 Sum_probs=31.1
Q ss_pred cccccccccccEEeccCCcchHhHHHHHHhcC----CCCccc
Q 017319 325 CCVCMVRHKGAAFIPCGHTFCRLCSRELWVQR----GNCPLC 362 (373)
Q Consensus 325 CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s----~~CPlC 362 (373)
|+||++++.+|+.|+|||.||..||..|++.. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999999865 369987
No 5
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.80 E-value=2.4e-09 Score=76.25 Aligned_cols=40 Identities=33% Similarity=0.946 Sum_probs=35.6
Q ss_pred cccccccccc---ccEEeccCCcchHhHHHHHHhcCCCCcccc
Q 017319 324 NCCVCMVRHK---GAAFIPCGHTFCRLCSRELWVQRGNCPLCN 363 (373)
Q Consensus 324 ~CpICle~~~---~pv~LPCGH~FC~sCI~rwlr~s~~CPlCR 363 (373)
.|+||++.+. ..+.++|||.||..|+.+|++...+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 5999999884 577889999999999999999999999997
No 6
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.77 E-value=4.1e-09 Score=73.55 Aligned_cols=38 Identities=32% Similarity=1.032 Sum_probs=33.7
Q ss_pred ccccccccccc-EEeccCCcchHhHHHHHHhcCCCCccc
Q 017319 325 CCVCMVRHKGA-AFIPCGHTFCRLCSRELWVQRGNCPLC 362 (373)
Q Consensus 325 CpICle~~~~p-v~LPCGH~FC~sCI~rwlr~s~~CPlC 362 (373)
|+||++.+.++ +.++|||.||..|+.+|+.....||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 678999999999999999998899988
No 7
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.7e-09 Score=97.23 Aligned_cols=53 Identities=25% Similarity=0.641 Sum_probs=44.8
Q ss_pred Cccccccccccccc--cEEeccCCcchHhHHHHHHhcCCCCcccccchh--hhhccC
Q 017319 321 IEHNCCVCMVRHKG--AAFIPCGHTFCRLCSRELWVQRGNCPLCNGFIL--EILDIF 373 (373)
Q Consensus 321 ~~l~CpICle~~~~--pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~--evL~IF 373 (373)
..+.|+|||+.+.. ++.+.|||.||..||...++....||+|++.|. ++.+||
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 44899999999864 455789999999999999999999999996554 666776
No 8
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3.6e-09 Score=103.15 Aligned_cols=50 Identities=28% Similarity=0.757 Sum_probs=45.6
Q ss_pred CCCccccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccccchhh
Q 017319 319 GGIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 319 ~~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
......|.+|++...+|..+||||.||+.||..|.....-||+||..+..
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 34558999999999999999999999999999999999899999998763
No 9
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.75 E-value=4.5e-09 Score=100.58 Aligned_cols=50 Identities=22% Similarity=0.709 Sum_probs=42.5
Q ss_pred ccccccccccccc--------cEEeccCCcchHhHHHHHHhcCCCCcccccchhhhhc
Q 017319 322 EHNCCVCMVRHKG--------AAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILEILD 371 (373)
Q Consensus 322 ~l~CpICle~~~~--------pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~evL~ 371 (373)
...|+||++.+.. +++++|+|.||..|+.+|+....+||+||..+..+++
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~ 231 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIK 231 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEee
Confidence 4679999998754 2456799999999999999998999999999887654
No 10
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.73 E-value=8.6e-09 Score=77.30 Aligned_cols=45 Identities=18% Similarity=0.354 Sum_probs=42.3
Q ss_pred cccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccccchh
Q 017319 323 HNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 323 l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
+.|+||++.+.+|+.++|||+||..|+.+|+.....||+|+..+.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 679999999999999999999999999999998889999998874
No 11
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.61 E-value=1.8e-08 Score=102.61 Aligned_cols=50 Identities=30% Similarity=0.638 Sum_probs=45.0
Q ss_pred CCCccccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccccchhh
Q 017319 319 GGIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 319 ~~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
....+.|+||++.+..|++++|||.||..|+..|+.....||+|+..+..
T Consensus 23 Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 34668999999999999999999999999999999988889999987753
No 12
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.58 E-value=1.7e-08 Score=100.65 Aligned_cols=48 Identities=31% Similarity=0.720 Sum_probs=44.9
Q ss_pred CccccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccccchhh
Q 017319 321 IEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
..+.|.||+++|..|+++||+|.||..||..++.+...||.|++.+.+
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 457899999999999999999999999999999999999999988774
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.55 E-value=5.8e-08 Score=66.33 Aligned_cols=43 Identities=33% Similarity=0.918 Sum_probs=36.9
Q ss_pred ccccccccccccEEec-cCCcchHhHHHHHHhc-CCCCcccccch
Q 017319 324 NCCVCMVRHKGAAFIP-CGHTFCRLCSRELWVQ-RGNCPLCNGFI 366 (373)
Q Consensus 324 ~CpICle~~~~pv~LP-CGH~FC~sCI~rwlr~-s~~CPlCRa~i 366 (373)
.|+||++.+..++.++ |||.||..|+..|+.. ...||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999996666665 9999999999999987 67899998753
No 14
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.54 E-value=4.7e-08 Score=68.14 Aligned_cols=38 Identities=39% Similarity=1.093 Sum_probs=34.5
Q ss_pred cccccccccccE-EeccCCcchHhHHHHHHh--cCCCCccc
Q 017319 325 CCVCMVRHKGAA-FIPCGHTFCRLCSRELWV--QRGNCPLC 362 (373)
Q Consensus 325 CpICle~~~~pv-~LPCGH~FC~sCI~rwlr--~s~~CPlC 362 (373)
|+||++.+..+. +++|||.||..|+.+|+. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999998 889999999999999999 44679988
No 15
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.8e-08 Score=98.37 Aligned_cols=85 Identities=28% Similarity=0.690 Sum_probs=62.3
Q ss_pred hhhccCCCcccccCCCcchhhhHHHHhhhccccccCCccccccCCCccccccccccccccEEeccCCc-chHhHHHHHHh
Q 017319 276 RQMGLEGSRYAVGEDEDEEEEDEAEAEAEGEYEEEGDDVEENAGGIEHNCCVCMVRHKGAAFIPCGHT-FCRLCSRELWV 354 (373)
Q Consensus 276 ~e~~legSry~v~dedDeeDd~dde~d~~~e~E~E~d~~~~~~~~~~l~CpICle~~~~pv~LPCGH~-FC~sCI~rwlr 354 (373)
+...+++.+|...+..+.++... +.+ +.........|.|||...++.++|||.|. .|..|.+....
T Consensus 257 Q~~~v~g~~y~LqEiyGien~~v-----------~~~--~~~~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~ 323 (349)
T KOG4265|consen 257 QILWVDGTRYLLQEIYGIENSTV-----------EGT--DADESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRY 323 (349)
T ss_pred eEEEEeCceeeeehhhccccCCC-----------CCC--ccccccCCCeeEEEecCCcceEEecchhhehhHhHHHHHHH
Confidence 34556678888777765432100 000 00011234569999999999999999998 69999999888
Q ss_pred cCCCCcccccchhhhhccC
Q 017319 355 QRGNCPLCNGFILEILDIF 373 (373)
Q Consensus 355 ~s~~CPlCRa~i~evL~IF 373 (373)
+.++||+||.+|.+++.|+
T Consensus 324 q~n~CPICRqpi~~ll~i~ 342 (349)
T KOG4265|consen 324 QTNNCPICRQPIEELLEIY 342 (349)
T ss_pred hhcCCCccccchHhhheec
Confidence 8899999999999999875
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=98.48 E-value=7.2e-08 Score=91.68 Aligned_cols=51 Identities=27% Similarity=0.614 Sum_probs=40.2
Q ss_pred CCccccccccccccc---------cEEeccCCcchHhHHHHHHhcC------CCCcccccchhhhh
Q 017319 320 GIEHNCCVCMVRHKG---------AAFIPCGHTFCRLCSRELWVQR------GNCPLCNGFILEIL 370 (373)
Q Consensus 320 ~~~l~CpICle~~~~---------pv~LPCGH~FC~sCI~rwlr~s------~~CPlCRa~i~evL 370 (373)
..+..|+||++.... .++.+|+|.||..|+..|.... ..||+||..+..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 345779999987632 3556899999999999999753 35999999887654
No 17
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.44 E-value=2e-07 Score=61.43 Aligned_cols=38 Identities=42% Similarity=1.142 Sum_probs=34.4
Q ss_pred cccccccccccEEeccCCcchHhHHHHHHh-cCCCCccc
Q 017319 325 CCVCMVRHKGAAFIPCGHTFCRLCSRELWV-QRGNCPLC 362 (373)
Q Consensus 325 CpICle~~~~pv~LPCGH~FC~sCI~rwlr-~s~~CPlC 362 (373)
|+||++....++.++|||.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999988999999999999999999998 45679987
No 18
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=9e-08 Score=99.37 Aligned_cols=47 Identities=28% Similarity=0.746 Sum_probs=42.7
Q ss_pred ccccccccccccccEEeccCCcchHhHHHHHHhcC-----CCCcccccchhh
Q 017319 322 EHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQR-----GNCPLCNGFILE 368 (373)
Q Consensus 322 ~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s-----~~CPlCRa~i~e 368 (373)
+..||||+....-++.+.|||.||..||..++... ..||+|+..|..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 78999999999999999999999999999998866 469999988875
No 19
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.42 E-value=1e-07 Score=93.69 Aligned_cols=49 Identities=33% Similarity=0.611 Sum_probs=44.9
Q ss_pred CccccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccccchhhh
Q 017319 321 IEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILEI 369 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~ev 369 (373)
..+.|-||..++..|+.++|||.||..||..++.....||+||+...+.
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~es 72 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCES 72 (391)
T ss_pred hHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhh
Confidence 4578999999999999999999999999999999999999999887643
No 20
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=9.1e-08 Score=73.20 Aligned_cols=51 Identities=25% Similarity=0.768 Sum_probs=46.0
Q ss_pred cccccccccccccEEeccCCc-chHhHHHHHHh-cCCCCcccccchhhhhccC
Q 017319 323 HNCCVCMVRHKGAAFIPCGHT-FCRLCSRELWV-QRGNCPLCNGFILEILDIF 373 (373)
Q Consensus 323 l~CpICle~~~~pv~LPCGH~-FC~sCI~rwlr-~s~~CPlCRa~i~evL~IF 373 (373)
..|.||++...+.++.-|||+ +|..|-.+.++ ....||+||+++..+++.|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY 60 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTY 60 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhh
Confidence 579999999999999999998 79999998888 4568999999999999876
No 21
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.32 E-value=3.5e-07 Score=72.13 Aligned_cols=48 Identities=23% Similarity=0.307 Sum_probs=39.8
Q ss_pred CccccccccccccccEEeccCCcchHhHHHHHHhc-CCCCcccccchhh
Q 017319 321 IEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQ-RGNCPLCNGFILE 368 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~-s~~CPlCRa~i~e 368 (373)
+.+.|+||...+.+|+.++|||+|+..||..|+.. ...||+|+..+..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 46899999999999999999999999999999998 7889999988764
No 22
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2e-07 Score=83.52 Aligned_cols=44 Identities=34% Similarity=0.976 Sum_probs=39.6
Q ss_pred CCccccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccc
Q 017319 320 GIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCN 363 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCR 363 (373)
...+.|+||++.+..+.+++|||.||..|+..++.....||.||
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccC
Confidence 35688999999999999999999999999999988556899999
No 23
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.6e-07 Score=89.54 Aligned_cols=48 Identities=27% Similarity=0.679 Sum_probs=42.3
Q ss_pred CCccccccccccccccEEeccCCcchHhHHHH-HHhcCCC-Ccccccchh
Q 017319 320 GIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRE-LWVQRGN-CPLCNGFIL 367 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv~LPCGH~FC~sCI~r-wlr~s~~-CPlCRa~i~ 367 (373)
..++.|.||++....+..++|||.||..||.. |-....- ||+||+.+.
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 45799999999999999999999999999999 7666655 999998764
No 24
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.30 E-value=5e-07 Score=71.63 Aligned_cols=40 Identities=35% Similarity=0.852 Sum_probs=33.2
Q ss_pred ccccccccccc-------------cEEeccCCcchHhHHHHHHhcCCCCcccc
Q 017319 324 NCCVCMVRHKG-------------AAFIPCGHTFCRLCSRELWVQRGNCPLCN 363 (373)
Q Consensus 324 ~CpICle~~~~-------------pv~LPCGH~FC~sCI~rwlr~s~~CPlCR 363 (373)
.|.||+..+.. .+..+|||.|+..||.+|+....+||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 49999998821 23447999999999999999999999997
No 25
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.29 E-value=3.7e-07 Score=66.18 Aligned_cols=35 Identities=34% Similarity=0.924 Sum_probs=22.5
Q ss_pred cccccccccc----cEEeccCCcchHhHHHHHHhcC----CCCc
Q 017319 325 CCVCMVRHKG----AAFIPCGHTFCRLCSRELWVQR----GNCP 360 (373)
Q Consensus 325 CpICle~~~~----pv~LPCGH~FC~sCI~rwlr~s----~~CP 360 (373)
|+||++ +.. |++|+|||+||..|+.+++... ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 776 8999999999999999999853 3576
No 26
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.28 E-value=5.4e-07 Score=64.56 Aligned_cols=41 Identities=29% Similarity=0.903 Sum_probs=35.1
Q ss_pred ccccccccc---cccEEeccCCcchHhHHHHHHhcCCCCccccc
Q 017319 324 NCCVCMVRH---KGAAFIPCGHTFCRLCSRELWVQRGNCPLCNG 364 (373)
Q Consensus 324 ~CpICle~~---~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa 364 (373)
.|.||+..+ ..+.+++|||.||..|+..+......||+|+.
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 389999988 35788899999999999999855678999984
No 27
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=2.1e-07 Score=91.40 Aligned_cols=49 Identities=31% Similarity=0.990 Sum_probs=45.3
Q ss_pred CccccccccccccccEEeccCCc-chHhHHHHHHhcCCCCcccccchhhhhccC
Q 017319 321 IEHNCCVCMVRHKGAAFIPCGHT-FCRLCSRELWVQRGNCPLCNGFILEILDIF 373 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LPCGH~-FC~sCI~rwlr~s~~CPlCRa~i~evL~IF 373 (373)
....|.|||+...+.++|+|||. -|..|-.++ .-||+||+.+..+++||
T Consensus 299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~rvvrif 348 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLECGHMVTCTKCGKRM----NECPICRQYIVRVVRIF 348 (350)
T ss_pred HHHHHHHHhcCCcceEEeecCcEEeehhhcccc----ccCchHHHHHHHHHhhh
Confidence 37899999999999999999998 699998877 58999999999999998
No 28
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=4.9e-07 Score=90.79 Aligned_cols=47 Identities=26% Similarity=0.634 Sum_probs=40.0
Q ss_pred ccccccccccc---ccEEeccCCcchHhHHHHHHhcCCC-Ccccccchhhh
Q 017319 323 HNCCVCMVRHK---GAAFIPCGHTFCRLCSRELWVQRGN-CPLCNGFILEI 369 (373)
Q Consensus 323 l~CpICle~~~---~pv~LPCGH~FC~sCI~rwlr~s~~-CPlCRa~i~ev 369 (373)
..|.||++.+. ....|||+|.||..||..|+....+ ||+|+..+..-
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 57999999996 3456899999999999999988754 99999877643
No 29
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=7.4e-07 Score=96.04 Aligned_cols=53 Identities=34% Similarity=0.745 Sum_probs=44.9
Q ss_pred CccccccccccccccEEeccCCcchHhHHHHHHhcC-CCCcccccchh--hhhccC
Q 017319 321 IEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQR-GNCPLCNGFIL--EILDIF 373 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s-~~CPlCRa~i~--evL~IF 373 (373)
.-+.|++|...+++.+.+.|||.||..|+...+..+ .+||.|+..|. -+.+||
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 447899999999999999999999999999988755 57999999887 444444
No 30
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.5e-06 Score=87.90 Aligned_cols=48 Identities=23% Similarity=0.683 Sum_probs=41.4
Q ss_pred CCCccccccccccc-c------------ccEEeccCCcchHhHHHHHHhcCCCCcccccch
Q 017319 319 GGIEHNCCVCMVRH-K------------GAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFI 366 (373)
Q Consensus 319 ~~~~l~CpICle~~-~------------~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i 366 (373)
...+..|.|||+.+ . .|..+||||.++..|++.|+....+||+||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 34668899999973 2 358899999999999999999999999999884
No 31
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.9e-06 Score=85.28 Aligned_cols=46 Identities=26% Similarity=0.671 Sum_probs=39.7
Q ss_pred cccccccccccc---ccEEeccCCcchHhHHHHHHh-cCCCCcccccchh
Q 017319 322 EHNCCVCMVRHK---GAAFIPCGHTFCRLCSRELWV-QRGNCPLCNGFIL 367 (373)
Q Consensus 322 ~l~CpICle~~~---~pv~LPCGH~FC~sCI~rwlr-~s~~CPlCRa~i~ 367 (373)
.-.|.|||..+. ....+||.|.|+..|+.+|+. .+..||+||..+.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 367999999885 356689999999999999998 7788999998874
No 32
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.2e-06 Score=90.24 Aligned_cols=46 Identities=26% Similarity=0.774 Sum_probs=41.8
Q ss_pred Cccccccccccccc-----cEEeccCCcchHhHHHHHHhcCCCCcccccch
Q 017319 321 IEHNCCVCMVRHKG-----AAFIPCGHTFCRLCSRELWVQRGNCPLCNGFI 366 (373)
Q Consensus 321 ~~l~CpICle~~~~-----pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i 366 (373)
....|+||++.+.. +..++|+|.||..|+..|++...+||+||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 45679999999987 79999999999999999999999999999843
No 33
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=2.6e-06 Score=85.52 Aligned_cols=51 Identities=24% Similarity=0.488 Sum_probs=42.6
Q ss_pred cCCCccccccccccccccEEec-cCCcchHhHHHHHHhcC-CCCcccccchhh
Q 017319 318 AGGIEHNCCVCMVRHKGAAFIP-CGHTFCRLCSRELWVQR-GNCPLCNGFILE 368 (373)
Q Consensus 318 ~~~~~l~CpICle~~~~pv~LP-CGH~FC~sCI~rwlr~s-~~CPlCRa~i~e 368 (373)
.....+.|+||++.++...+++ |+|.||..||..-++.. +.||.||..+..
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 3446689999999998777765 99999999999988876 569999987753
No 34
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.82 E-value=4.9e-06 Score=82.82 Aligned_cols=52 Identities=27% Similarity=0.494 Sum_probs=46.6
Q ss_pred cCCCccccccccccccccEEec-cCCcchHhHHHHHHhcCCCCcccccchhhh
Q 017319 318 AGGIEHNCCVCMVRHKGAAFIP-CGHTFCRLCSRELWVQRGNCPLCNGFILEI 369 (373)
Q Consensus 318 ~~~~~l~CpICle~~~~pv~LP-CGH~FC~sCI~rwlr~s~~CPlCRa~i~ev 369 (373)
......+|.+|.+++.++.++. |-|+||..||.+++.....||.|...+.+.
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 3456789999999999998886 999999999999999999999999888765
No 35
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.1e-05 Score=82.71 Aligned_cols=50 Identities=36% Similarity=0.835 Sum_probs=45.7
Q ss_pred CCccccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccccchhhh
Q 017319 320 GIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILEI 369 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~ev 369 (373)
..++.|.||+..+..|+.+||||.||..|+.+.+....-||+||..+.+.
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVEL 131 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCcccccccccc
Confidence 56799999999999999999999999999999888888999999988753
No 36
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=1.7e-05 Score=79.74 Aligned_cols=52 Identities=31% Similarity=0.657 Sum_probs=42.3
Q ss_pred CCCccccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccccchhhhhccC
Q 017319 319 GGIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILEILDIF 373 (373)
Q Consensus 319 ~~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~evL~IF 373 (373)
......|.||.+..++.+++||||+.| |..-..+. ..||+||..|..++++|
T Consensus 302 ~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~l-~~CPvCR~rI~~~~k~y 353 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKHL-PQCPVCRQRIRLVRKRY 353 (355)
T ss_pred cCCCCceEEecCCccceeeecCCcEEE--chHHHhhC-CCCchhHHHHHHHHHHh
Confidence 346678999999999999999999976 65443333 45999999999999877
No 37
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.61 E-value=2.4e-05 Score=73.76 Aligned_cols=50 Identities=24% Similarity=0.638 Sum_probs=44.4
Q ss_pred CCccccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccccchhhh
Q 017319 320 GIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILEI 369 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~ev 369 (373)
...+.|.||...+..|+.+.|||.||..|..+-++....|-+|.......
T Consensus 194 ~IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~ 243 (259)
T COG5152 194 KIPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGR 243 (259)
T ss_pred CCceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhccc
Confidence 36689999999999999999999999999999988888999997765543
No 38
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.46 E-value=8.7e-05 Score=61.32 Aligned_cols=46 Identities=22% Similarity=0.575 Sum_probs=34.4
Q ss_pred cccccccccccc-----------c-cEE-eccCCcchHhHHHHHHhcC---CCCcccccchh
Q 017319 322 EHNCCVCMVRHK-----------G-AAF-IPCGHTFCRLCSRELWVQR---GNCPLCNGFIL 367 (373)
Q Consensus 322 ~l~CpICle~~~-----------~-pv~-LPCGH~FC~sCI~rwlr~s---~~CPlCRa~i~ 367 (373)
+..|.||...|. + |+. -.|+|.|+..||.+|+... ..||+||+.+.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 345777777664 1 223 3699999999999999863 67999998753
No 39
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.42 E-value=3.1e-05 Score=61.00 Aligned_cols=43 Identities=28% Similarity=0.709 Sum_probs=23.3
Q ss_pred ccccccccccccccEEe-ccCCcchHhHHHHHHhcCCCCcccccch
Q 017319 322 EHNCCVCMVRHKGAAFI-PCGHTFCRLCSRELWVQRGNCPLCNGFI 366 (373)
Q Consensus 322 ~l~CpICle~~~~pv~L-PCGH~FC~sCI~rwlr~s~~CPlCRa~i 366 (373)
.+.|.+|.+.++.|+.+ .|.|.||..|+...+. ..||+|+.+-
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPA 50 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChH
Confidence 46899999999999865 6999999999976433 4599998764
No 40
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=5e-05 Score=74.97 Aligned_cols=50 Identities=20% Similarity=0.603 Sum_probs=45.2
Q ss_pred CccccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccccchhhhh
Q 017319 321 IEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILEIL 370 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~evL 370 (373)
..+.|-||...+..||.+.|+|.||..|....++....|.+|.+.+..+.
T Consensus 240 ~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred CCccccccccccccchhhcCCceeehhhhccccccCCcceeccccccccc
Confidence 55789999999999999999999999999999988899999988776654
No 41
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.29 E-value=9.1e-05 Score=75.87 Aligned_cols=49 Identities=27% Similarity=0.575 Sum_probs=42.6
Q ss_pred ccccccccccccccEEeccCCcchHhHHHHHHhcC--CCCcccccchhhhh
Q 017319 322 EHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQR--GNCPLCNGFILEIL 370 (373)
Q Consensus 322 ~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s--~~CPlCRa~i~evL 370 (373)
-..|.||-+.-++...-||||..|..|+..|.... ..||+||..|+..-
T Consensus 369 FeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 35799999999998888999999999999998655 57999999998643
No 42
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00012 Score=73.83 Aligned_cols=51 Identities=31% Similarity=0.642 Sum_probs=40.9
Q ss_pred CCccccccccccccccE-----E---eccCCcchHhHHHHHHh--c-----CCCCcccccchhhhh
Q 017319 320 GIEHNCCVCMVRHKGAA-----F---IPCGHTFCRLCSRELWV--Q-----RGNCPLCNGFILEIL 370 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv-----~---LPCGH~FC~sCI~rwlr--~-----s~~CPlCRa~i~evL 370 (373)
..+..|.|||+...... + .+|.|.||..|+..|.. + .+.||.||.....+.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 45688999999886554 3 56999999999999983 3 367999998876654
No 43
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.18 E-value=8.2e-05 Score=81.08 Aligned_cols=52 Identities=21% Similarity=0.362 Sum_probs=43.6
Q ss_pred CCccccccccccccccE---EeccCCcchHhHHHHHHhcCCCCcccccchhhhhc
Q 017319 320 GIEHNCCVCMVRHKGAA---FIPCGHTFCRLCSRELWVQRGNCPLCNGFILEILD 371 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv---~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~evL~ 371 (373)
.....|++|+..+.+.. ..+|+|.||..|+..|.+...+||+||..|.+++.
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeee
Confidence 35578999998886432 34799999999999999999999999999988763
No 44
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00047 Score=69.87 Aligned_cols=51 Identities=22% Similarity=0.587 Sum_probs=45.9
Q ss_pred cCCCccccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccccchhh
Q 017319 318 AGGIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 318 ~~~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
...++..|+||.--....++.||+|.-|..||.+.+-+.+.|-+|+..+..
T Consensus 418 p~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred CCcccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 345778999999999999999999999999999999999999999987763
No 45
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.92 E-value=0.00036 Score=71.22 Aligned_cols=50 Identities=26% Similarity=0.611 Sum_probs=44.2
Q ss_pred CCccccccccccccccEEe-ccCCcchHhHHHHHHhcCCCCcccccchhhh
Q 017319 320 GIEHNCCVCMVRHKGAAFI-PCGHTFCRLCSRELWVQRGNCPLCNGFILEI 369 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv~L-PCGH~FC~sCI~rwlr~s~~CPlCRa~i~ev 369 (373)
..++.|++|+..+.+|+.. .|||.||..|+..|+.....||.|+..+...
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchh
Confidence 3568999999999999994 8999999999999999988999998776543
No 46
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00037 Score=73.01 Aligned_cols=48 Identities=25% Similarity=0.587 Sum_probs=37.8
Q ss_pred Ccccccccccccc-----------------ccEEeccCCcchHhHHHHHHh-cCCCCcccccchhh
Q 017319 321 IEHNCCVCMVRHK-----------------GAAFIPCGHTFCRLCSRELWV-QRGNCPLCNGFILE 368 (373)
Q Consensus 321 ~~l~CpICle~~~-----------------~pv~LPCGH~FC~sCI~rwlr-~s~~CPlCRa~i~e 368 (373)
....|+|||..+. +-.++||-|.|+..|+.+|+. .+..||+||.++..
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 4456999998652 123459999999999999998 44589999998754
No 47
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.00082 Score=66.05 Aligned_cols=52 Identities=27% Similarity=0.581 Sum_probs=42.6
Q ss_pred ccCCCccccccccccccccEEec-cCCcchHhHHHHHHhcC--CCCcccccchhh
Q 017319 317 NAGGIEHNCCVCMVRHKGAAFIP-CGHTFCRLCSRELWVQR--GNCPLCNGFILE 368 (373)
Q Consensus 317 ~~~~~~l~CpICle~~~~pv~LP-CGH~FC~sCI~rwlr~s--~~CPlCRa~i~e 368 (373)
.....+.+|++|.+....|..+- |||.||..|+..-..-. ++||.|...+..
T Consensus 234 s~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred ccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 33446688999999999988775 99999999998876544 799999887763
No 48
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.60 E-value=0.00046 Score=54.53 Aligned_cols=46 Identities=30% Similarity=0.762 Sum_probs=23.1
Q ss_pred cccccccccccc-c---cEEe----ccCCcchHhHHHHHHhcC-----------CCCcccccchh
Q 017319 322 EHNCCVCMVRHK-G---AAFI----PCGHTFCRLCSRELWVQR-----------GNCPLCNGFIL 367 (373)
Q Consensus 322 ~l~CpICle~~~-~---pv~L----PCGH~FC~sCI~rwlr~s-----------~~CPlCRa~i~ 367 (373)
+..|.||+..+. . +... .|++.|+..|+.+|+... +.||.|+.+|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 357999998764 2 2221 589999999999998742 35999998875
No 49
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.58 E-value=0.00077 Score=69.91 Aligned_cols=49 Identities=27% Similarity=0.564 Sum_probs=38.3
Q ss_pred ccCCCcccccccccccccc----EEeccCCcchHhHHHHHHhcCCCCcccccchh
Q 017319 317 NAGGIEHNCCVCMVRHKGA----AFIPCGHTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 317 ~~~~~~l~CpICle~~~~p----v~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
......-+|+||++.+..- +.+.|.|.|+..|+.+|.. .+||+||....
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 3344567899999988643 4567999999999999965 58999997654
No 50
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.53 E-value=0.0013 Score=50.31 Aligned_cols=41 Identities=22% Similarity=0.466 Sum_probs=29.2
Q ss_pred CccccccccccccccEEe-ccCCcchHhHHHHHHhc--CCCCcc
Q 017319 321 IEHNCCVCMVRHKGAAFI-PCGHTFCRLCSRELWVQ--RGNCPL 361 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~L-PCGH~FC~sCI~rwlr~--s~~CPl 361 (373)
..+.|+|.+..+.+|+.- .|||.|.+..|..|++. ...||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 558899999999999886 69999999999999943 346998
No 51
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.42 E-value=0.0011 Score=73.84 Aligned_cols=47 Identities=23% Similarity=0.583 Sum_probs=36.3
Q ss_pred Ccccccccccccc-------ccEEeccCCcchHhHHHHHHhcC--CCCcccccchh
Q 017319 321 IEHNCCVCMVRHK-------GAAFIPCGHTFCRLCSRELWVQR--GNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~-------~pv~LPCGH~FC~sCI~rwlr~s--~~CPlCRa~i~ 367 (373)
....|+||...+. ....-.|.|.||..|+.+|.+.. .+||+||..+.
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3456999998764 22233589999999999999876 57999997764
No 52
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.35 E-value=0.0017 Score=64.86 Aligned_cols=44 Identities=32% Similarity=0.752 Sum_probs=37.8
Q ss_pred CccccccccccccccEEec-cCCcchHhHHHHHHh-cCCCCccccc
Q 017319 321 IEHNCCVCMVRHKGAAFIP-CGHTFCRLCSRELWV-QRGNCPLCNG 364 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LP-CGH~FC~sCI~rwlr-~s~~CPlCRa 364 (373)
..+.|+.|..++.+++.++ |+|.||..||...+. ..+.||.|-.
T Consensus 273 i~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 273 ISLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 4489999999999999997 899999999986654 5589999954
No 53
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.16 E-value=0.0051 Score=45.55 Aligned_cols=40 Identities=18% Similarity=0.502 Sum_probs=31.5
Q ss_pred ccccccc--cccccEEeccC-----CcchHhHHHHHHhcC--CCCcccc
Q 017319 324 NCCVCMV--RHKGAAFIPCG-----HTFCRLCSRELWVQR--GNCPLCN 363 (373)
Q Consensus 324 ~CpICle--~~~~pv~LPCG-----H~FC~sCI~rwlr~s--~~CPlCR 363 (373)
.|-||++ ...++...||. |.++..|+.+|+... .+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 33466778885 779999999999765 4799995
No 54
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.0029 Score=62.36 Aligned_cols=49 Identities=22% Similarity=0.528 Sum_probs=39.0
Q ss_pred CCCcccccccccccc----------ccEEeccCCcchHhHHHHHHhcC--CCCcccccchh
Q 017319 319 GGIEHNCCVCMVRHK----------GAAFIPCGHTFCRLCSRELWVQR--GNCPLCNGFIL 367 (373)
Q Consensus 319 ~~~~l~CpICle~~~----------~pv~LPCGH~FC~sCI~rwlr~s--~~CPlCRa~i~ 367 (373)
...+..|.||-+.+. +...|.|+|+|+.-||.-|.... .+||.|+..+.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 345678999998774 34678999999999999997654 47999987654
No 55
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.78 E-value=0.007 Score=61.53 Aligned_cols=48 Identities=31% Similarity=0.732 Sum_probs=40.0
Q ss_pred cccccccccccccEEeccCCcchHhHHHHH--HhcCCCCcccccchhhhh
Q 017319 323 HNCCVCMVRHKGAAFIPCGHTFCRLCSREL--WVQRGNCPLCNGFILEIL 370 (373)
Q Consensus 323 l~CpICle~~~~pv~LPCGH~FC~sCI~rw--lr~s~~CPlCRa~i~evL 370 (373)
..|.||-..+.-..++||+|.+|.-|..+. ++..+.|++||..-..+|
T Consensus 62 ~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 62 MNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred ceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceEE
Confidence 569999999988889999999999998655 456688999998765544
No 56
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.0059 Score=61.41 Aligned_cols=54 Identities=22% Similarity=0.536 Sum_probs=44.1
Q ss_pred CCccccccccccccccEEec-cCCcchHhHHHHHHhcCCCCcccccc--hhhhhccC
Q 017319 320 GIEHNCCVCMVRHKGAAFIP-CGHTFCRLCSRELWVQRGNCPLCNGF--ILEILDIF 373 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv~LP-CGH~FC~sCI~rwlr~s~~CPlCRa~--i~evL~IF 373 (373)
.+...|+||+....++..+. .|-+||..|+..++...+.||+-..+ +..++++|
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 45678999999999888877 59999999999999999999986544 44666554
No 57
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=95.71 E-value=0.0093 Score=49.20 Aligned_cols=29 Identities=28% Similarity=0.556 Sum_probs=26.6
Q ss_pred ccCCcchHhHHHHHHhcCCCCcccccchh
Q 017319 339 PCGHTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 339 PCGH~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
-|.|.|+..||.+|+..++.||+||+.+.
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 59999999999999999999999998754
No 58
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.0035 Score=51.27 Aligned_cols=44 Identities=25% Similarity=0.610 Sum_probs=32.8
Q ss_pred ccccccccccc------------cEEe-ccCCcchHhHHHHHHhcC---CCCcccccchh
Q 017319 324 NCCVCMVRHKG------------AAFI-PCGHTFCRLCSRELWVQR---GNCPLCNGFIL 367 (373)
Q Consensus 324 ~CpICle~~~~------------pv~L-PCGH~FC~sCI~rwlr~s---~~CPlCRa~i~ 367 (373)
.|.||.-.|.. |.++ -|.|.|+..||.+|+... ..||+||+.+.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 67777766631 2333 499999999999999755 46999998753
No 59
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.0078 Score=58.77 Aligned_cols=49 Identities=16% Similarity=0.227 Sum_probs=41.6
Q ss_pred CCcccccccccccccc----EEeccCCcchHhHHHHHHhcCCCCcccccchhh
Q 017319 320 GIEHNCCVCMVRHKGA----AFIPCGHTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 320 ~~~l~CpICle~~~~p----v~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
...+.|+||.+.+.+. ++-||||+||..|+.++.+..+.||+|-.++..
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcc
Confidence 3678999999999753 334899999999999999999999999877753
No 60
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.40 E-value=0.011 Score=56.99 Aligned_cols=49 Identities=27% Similarity=0.484 Sum_probs=38.7
Q ss_pred CCCccccccccccccc----cEEeccCCcchHhHHHHHHhcCCCCcccccchhh
Q 017319 319 GGIEHNCCVCMVRHKG----AAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 319 ~~~~l~CpICle~~~~----pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
....+.|||+...+.. .++.+|||+|+..|+.+.. ....||+|..+|..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCcccc
Confidence 3467999999988842 3444899999999999984 45679999988763
No 61
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.17 E-value=0.0083 Score=46.04 Aligned_cols=45 Identities=27% Similarity=0.658 Sum_probs=35.8
Q ss_pred CccccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccccchh
Q 017319 321 IEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
....|..|...-...+++||||..|..|..-+.. +.||+|..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~rY--ngCPfC~~~~~ 50 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGERY--NGCPFCGTPFE 50 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChhhc--cCCCCCCCccc
Confidence 3466888888878888999999999999864422 57999987764
No 62
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.13 E-value=0.0084 Score=63.71 Aligned_cols=46 Identities=30% Similarity=0.607 Sum_probs=38.8
Q ss_pred CccccccccccccccEEeccCCcchHhHHHHHHhcC-----CCCcccccch
Q 017319 321 IEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQR-----GNCPLCNGFI 366 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s-----~~CPlCRa~i 366 (373)
....|.+|.+.-.+++...|-|.||..|+.++...- .+||.|-..+
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 456899999999999999999999999998886532 4799996554
No 63
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.0077 Score=56.91 Aligned_cols=45 Identities=24% Similarity=0.707 Sum_probs=38.0
Q ss_pred cccccccccccEEeccCCc-chHhHHHHHHhcCCCCcccccchhhhhccC
Q 017319 325 CCVCMVRHKGAAFIPCGHT-FCRLCSRELWVQRGNCPLCNGFILEILDIF 373 (373)
Q Consensus 325 CpICle~~~~pv~LPCGH~-FC~sCI~rwlr~s~~CPlCRa~i~evL~IF 373 (373)
|.+|...-....++||.|. +|..|-.. ...||+|+......+.+|
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKTSSVEVN 206 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc----CccCCCCcChhhceeecc
Confidence 9999999999999999998 79999754 156999999888777654
No 64
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.01 E-value=0.014 Score=43.65 Aligned_cols=42 Identities=31% Similarity=0.858 Sum_probs=21.5
Q ss_pred ccccccccc--ccEEec--cCCcchHhHHHHHHh-cCCCCcccccch
Q 017319 325 CCVCMVRHK--GAAFIP--CGHTFCRLCSRELWV-QRGNCPLCNGFI 366 (373)
Q Consensus 325 CpICle~~~--~pv~LP--CGH~FC~sCI~rwlr-~s~~CPlCRa~i 366 (373)
|++|.+.+. +..++| ||+.+|..|+...+. ..+.||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 678888762 334555 788899999999986 468899999864
No 65
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.79 E-value=0.014 Score=63.78 Aligned_cols=45 Identities=33% Similarity=0.776 Sum_probs=38.9
Q ss_pred cccccccccccccEEeccCCcchHhHHHHHHhcC--CCCcccccchhh
Q 017319 323 HNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQR--GNCPLCNGFILE 368 (373)
Q Consensus 323 l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s--~~CPlCRa~i~e 368 (373)
+.|.||++ ...++..+|+|.||..|+....... ..||+||..+.+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 78999999 7788888999999999999887765 359999987764
No 66
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.018 Score=59.60 Aligned_cols=46 Identities=28% Similarity=0.835 Sum_probs=35.4
Q ss_pred cCCCccccccccccccc---cEEeccCCcchHhHHHHHHhcC--------CCCcccc
Q 017319 318 AGGIEHNCCVCMVRHKG---AAFIPCGHTFCRLCSRELWVQR--------GNCPLCN 363 (373)
Q Consensus 318 ~~~~~l~CpICle~~~~---pv~LPCGH~FC~sCI~rwlr~s--------~~CPlCR 363 (373)
.....+.|.||++.... -+++||+|+||+.|+..++... .+||-|.
T Consensus 180 F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 180 FVNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred HHhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 34466889999998864 5678999999999998887533 3577664
No 67
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.021 Score=49.18 Aligned_cols=27 Identities=33% Similarity=0.565 Sum_probs=25.1
Q ss_pred ccCCcchHhHHHHHHhcCCCCcccccc
Q 017319 339 PCGHTFCRLCSRELWVQRGNCPLCNGF 365 (373)
Q Consensus 339 PCGH~FC~sCI~rwlr~s~~CPlCRa~ 365 (373)
-|.|.|+.-||.+|++.+..||+|...
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 599999999999999999999999764
No 68
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.15 E-value=0.027 Score=56.08 Aligned_cols=47 Identities=30% Similarity=0.579 Sum_probs=37.6
Q ss_pred CCCccccccccccccccEEecc--CCcchHhHHHHHHhcCCCCcccccchhhh
Q 017319 319 GGIEHNCCVCMVRHKGAAFIPC--GHTFCRLCSRELWVQRGNCPLCNGFILEI 369 (373)
Q Consensus 319 ~~~~l~CpICle~~~~pv~LPC--GH~FC~sCI~rwlr~s~~CPlCRa~i~ev 369 (373)
..+-+.||||...+..|++ .| ||.-|..|-.+ ....||.||.++..+
T Consensus 45 ~~~lleCPvC~~~l~~Pi~-QC~nGHlaCssC~~~---~~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIF-QCDNGHLACSSCRTK---VSNKCPTCRLPIGNI 93 (299)
T ss_pred chhhccCchhhccCcccce-ecCCCcEehhhhhhh---hcccCCccccccccH
Confidence 3466889999999998865 66 79999999863 347899999988744
No 69
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=93.97 E-value=0.035 Score=64.66 Aligned_cols=52 Identities=27% Similarity=0.628 Sum_probs=41.4
Q ss_pred cCCCccccccccccc---cccEEeccCCcchHhHHHHHHhcC----------CCCcccccchhhh
Q 017319 318 AGGIEHNCCVCMVRH---KGAAFIPCGHTFCRLCSRELWVQR----------GNCPLCNGFILEI 369 (373)
Q Consensus 318 ~~~~~l~CpICle~~---~~pv~LPCGH~FC~sCI~rwlr~s----------~~CPlCRa~i~ev 369 (373)
....+..|.||+..- ...+.|.|+|.|+..|..+.+.++ ..||+|..+|..+
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 445667899999754 356788999999999998888765 4699999888754
No 70
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.032 Score=56.08 Aligned_cols=47 Identities=34% Similarity=0.701 Sum_probs=33.6
Q ss_pred cccccccccccc-ccEEeccCCcchHhHHHHHHhcCCCCcccccchhhhh
Q 017319 322 EHNCCVCMVRHK-GAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILEIL 370 (373)
Q Consensus 322 ~l~CpICle~~~-~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~evL 370 (373)
...|--|--.+. -..++||.|+||..|... ...+.||.|-..+..+-
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQRIE 137 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhc--CccccCcCcccHHHHHH
Confidence 356777765443 345679999999999854 34678999987776554
No 71
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=93.25 E-value=0.14 Score=52.33 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=19.0
Q ss_pred ccchHHHHHHHHHhhhccCCCccccc
Q 017319 263 PRMSLMDLLEETDRQMGLEGSRYAVG 288 (373)
Q Consensus 263 ~rmSLm~LLeE~e~e~~legSry~v~ 288 (373)
-+++|++.+-|.-.+.-....+|..+
T Consensus 240 i~~tl~drF~e~F~~~V~~Np~y~~~ 265 (358)
T PF10272_consen 240 IHQTLSDRFVEAFKEQVEQNPRYSYP 265 (358)
T ss_pred ECCCHHHHHHHHHHHHHHhCCccccC
Confidence 56788888877777666667777666
No 72
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=92.20 E-value=0.055 Score=40.65 Aligned_cols=46 Identities=24% Similarity=0.644 Sum_probs=26.9
Q ss_pred cccccccccccccEEeccC-CcchHhHHHHHHhcCCCCcccccchhhhh
Q 017319 323 HNCCVCMVRHKGAAFIPCG-HTFCRLCSRELWVQRGNCPLCNGFILEIL 370 (373)
Q Consensus 323 l~CpICle~~~~pv~LPCG-H~FC~sCI~rwlr~s~~CPlCRa~i~evL 370 (373)
+.|.-|.- .+.-++.|. |..|..|+..++..+..||+|..++...+
T Consensus 3 ~nCKsCWf--~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 3 YNCKSCWF--ANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ----SS-S----SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred ccChhhhh--cCCCeeeecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 34666663 334466786 77899999999999999999999887654
No 73
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=92.15 E-value=0.044 Score=54.92 Aligned_cols=46 Identities=20% Similarity=0.533 Sum_probs=34.2
Q ss_pred ccccccccccccc---cEEeccCCcchHhHHHHHHhcC-----------------------CCCcccccchh
Q 017319 322 EHNCCVCMVRHKG---AAFIPCGHTFCRLCSRELWVQR-----------------------GNCPLCNGFIL 367 (373)
Q Consensus 322 ~l~CpICle~~~~---pv~LPCGH~FC~sCI~rwlr~s-----------------------~~CPlCRa~i~ 367 (373)
...|.||+--|.+ -+.++|-|.|+..|+.+++..- ..||+||..|.
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 3459999877752 3556899999999997775421 35999998775
No 74
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.67 E-value=0.12 Score=53.22 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=37.0
Q ss_pred Ccccccccccccc---ccEEeccCCcchHhHHHHHHhcC---CCCcccccc
Q 017319 321 IEHNCCVCMVRHK---GAAFIPCGHTFCRLCSRELWVQR---GNCPLCNGF 365 (373)
Q Consensus 321 ~~l~CpICle~~~---~pv~LPCGH~FC~sCI~rwlr~s---~~CPlCRa~ 365 (373)
.-+.|||=.+.-. .|..|.|||++|..-+.++.++. +.||+|-..
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 5588999777664 58899999999999999998865 479999543
No 75
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.31 E-value=0.079 Score=54.81 Aligned_cols=45 Identities=27% Similarity=0.610 Sum_probs=36.1
Q ss_pred Ccccccccccccc----ccEEeccCCcchHhHHHHHHhcC--CCCcccccc
Q 017319 321 IEHNCCVCMVRHK----GAAFIPCGHTFCRLCSRELWVQR--GNCPLCNGF 365 (373)
Q Consensus 321 ~~l~CpICle~~~----~pv~LPCGH~FC~sCI~rwlr~s--~~CPlCRa~ 365 (373)
..+.|..|-+.+- .--.+||.|.|+..|+.+++.+. .+||.||.-
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 4578999998773 33457999999999999999765 469999943
No 76
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=90.92 E-value=0.14 Score=52.24 Aligned_cols=44 Identities=27% Similarity=0.778 Sum_probs=31.9
Q ss_pred cccccccccc--ccEEe--ccCCcchHhHHHHHHhcC-CCCcccccchh
Q 017319 324 NCCVCMVRHK--GAAFI--PCGHTFCRLCSRELWVQR-GNCPLCNGFIL 367 (373)
Q Consensus 324 ~CpICle~~~--~pv~L--PCGH~FC~sCI~rwlr~s-~~CPlCRa~i~ 367 (373)
.|+.|++.+. +.-+. +||-..|.-|+..+...- ++||.||....
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 3999999764 34444 577778999987665543 68999997654
No 77
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=90.84 E-value=0.16 Score=45.59 Aligned_cols=48 Identities=25% Similarity=0.674 Sum_probs=40.6
Q ss_pred CccccccccccccccEEec----cCCcchHhHHHHHHhcC---CCCcccccchhh
Q 017319 321 IEHNCCVCMVRHKGAAFIP----CGHTFCRLCSRELWVQR---GNCPLCNGFILE 368 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LP----CGH~FC~sCI~rwlr~s---~~CPlCRa~i~e 368 (373)
.-+.|-||.+...+..+|. ||-..|-.|...+|+.. ..||+|+..+..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 4588999999988887773 89889999999988866 579999988764
No 78
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=90.44 E-value=0.11 Score=42.34 Aligned_cols=31 Identities=26% Similarity=0.603 Sum_probs=24.6
Q ss_pred CCccccccccccccccE--EeccCCcchHhHHH
Q 017319 320 GIEHNCCVCMVRHKGAA--FIPCGHTFCRLCSR 350 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv--~LPCGH~FC~sCI~ 350 (373)
.....|.+|...+.... ..||||.||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 34567999999987543 45999999999975
No 79
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.31 E-value=0.13 Score=57.46 Aligned_cols=48 Identities=21% Similarity=0.517 Sum_probs=38.2
Q ss_pred CccccccccccccccE-EeccCCcchHhHHHHHHhcCCCCcccccchhhhhc
Q 017319 321 IEHNCCVCMVRHKGAA-FIPCGHTFCRLCSRELWVQRGNCPLCNGFILEILD 371 (373)
Q Consensus 321 ~~l~CpICle~~~~pv-~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~evL~ 371 (373)
+...|..|-..+.-|. ...|||.|+..|+. .....||.|+.....++.
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~~~m~ 887 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPELRGVMD 887 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchhhhhhHH
Confidence 4468999999998664 45899999999998 445689999987666554
No 80
>PHA03096 p28-like protein; Provisional
Probab=89.94 E-value=0.17 Score=50.21 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=31.2
Q ss_pred cccccccccccc--------cEEeccCCcchHhHHHHHHhcC------CCCcccccch
Q 017319 323 HNCCVCMVRHKG--------AAFIPCGHTFCRLCSRELWVQR------GNCPLCNGFI 366 (373)
Q Consensus 323 l~CpICle~~~~--------pv~LPCGH~FC~sCI~rwlr~s------~~CPlCRa~i 366 (373)
..|.||++.... .++-.|.|.||..|+..|.... ..||.|+..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHH
Confidence 569999987642 2233599999999999998754 2355555544
No 81
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=89.70 E-value=0.15 Score=50.57 Aligned_cols=47 Identities=28% Similarity=0.592 Sum_probs=38.3
Q ss_pred Ccccccccccccc----ccEEeccCCcchHhHHHHHHhcCCCCcccccchhh
Q 017319 321 IEHNCCVCMVRHK----GAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 321 ~~l~CpICle~~~----~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
....|+||.+.+. .+..++|||..+..|+..+.....+||+|.. +..
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d 207 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGD 207 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHH
Confidence 3345999998664 5677899999999999999888799999988 443
No 82
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=89.66 E-value=0.15 Score=49.99 Aligned_cols=47 Identities=23% Similarity=0.708 Sum_probs=33.9
Q ss_pred Ccccccccccccc---ccEEe--c-cCCcchHhHHHHHHhcC-CCCc--ccccchh
Q 017319 321 IEHNCCVCMVRHK---GAAFI--P-CGHTFCRLCSRELWVQR-GNCP--LCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~---~pv~L--P-CGH~FC~sCI~rwlr~s-~~CP--lCRa~i~ 367 (373)
.+..||||..... +..++ | |-|.+|.+|+.+.+... ..|| -|..-++
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 3467999997553 22222 5 99999999999998765 4699 7765544
No 83
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.63 E-value=0.22 Score=55.87 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=27.7
Q ss_pred CCccccccccccccc--cEEeccCCcchHhHHHHHHhc
Q 017319 320 GIEHNCCVCMVRHKG--AAFIPCGHTFCRLCSRELWVQ 355 (373)
Q Consensus 320 ~~~l~CpICle~~~~--pv~LPCGH~FC~sCI~rwlr~ 355 (373)
.....|-+|...+.. -++.||||.|++.|+.+....
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~ 852 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLS 852 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHHHHc
Confidence 456789999987743 344599999999999877553
No 84
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.25 E-value=0.26 Score=47.91 Aligned_cols=44 Identities=27% Similarity=0.517 Sum_probs=36.1
Q ss_pred cccccccccc--ccEEeccCCcchHhHHHHHHhcC--------CCCcccccchh
Q 017319 324 NCCVCMVRHK--GAAFIPCGHTFCRLCSRELWVQR--------GNCPLCNGFIL 367 (373)
Q Consensus 324 ~CpICle~~~--~pv~LPCGH~FC~sCI~rwlr~s--------~~CPlCRa~i~ 367 (373)
.|..|...+. +.+.|-|-|.|++.|+.+|..+- ..||.|..+|.
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 4889988775 56788999999999999997654 36999988764
No 85
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=89.08 E-value=0.23 Score=44.47 Aligned_cols=36 Identities=22% Similarity=0.630 Sum_probs=27.6
Q ss_pred ccccccccccccc---cEEeccC------CcchHhHHHHHHhcCC
Q 017319 322 EHNCCVCMVRHKG---AAFIPCG------HTFCRLCSRELWVQRG 357 (373)
Q Consensus 322 ~l~CpICle~~~~---pv~LPCG------H~FC~sCI~rwlr~s~ 357 (373)
...|.||++.+.. .+.++|| |.||..|+.+|.+...
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~ 70 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERN 70 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhcc
Confidence 4679999998864 4556776 5689999999955443
No 86
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=88.97 E-value=0.13 Score=59.45 Aligned_cols=47 Identities=21% Similarity=0.583 Sum_probs=39.9
Q ss_pred CCcccccccccccc-ccEEeccCCcchHhHHHHHHhcCCCCcccccch
Q 017319 320 GIEHNCCVCMVRHK-GAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFI 366 (373)
Q Consensus 320 ~~~l~CpICle~~~-~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i 366 (373)
.....|.||.+.+. .....-|||.+|..|...|+.....||+|...+
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 34568999999998 555667999999999999999999999997443
No 87
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.56 E-value=0.28 Score=46.26 Aligned_cols=46 Identities=26% Similarity=0.646 Sum_probs=34.5
Q ss_pred cccccccccccc-------EEeccCCcchHhHHHHHHhcC-----------CCCcccccchhhh
Q 017319 324 NCCVCMVRHKGA-------AFIPCGHTFCRLCSRELWVQR-----------GNCPLCNGFILEI 369 (373)
Q Consensus 324 ~CpICle~~~~p-------v~LPCGH~FC~sCI~rwlr~s-----------~~CPlCRa~i~ev 369 (373)
-|.||..+.-+. --+.||..|+.-|+..|++.- +.||.|..++.-.
T Consensus 167 ~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 167 ACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred cccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 488888755322 224799999999999999853 4699999887643
No 88
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.51 E-value=0.2 Score=54.69 Aligned_cols=38 Identities=29% Similarity=0.746 Sum_probs=30.0
Q ss_pred Ccccccccccccc----ccEEeccCCcchHhHHHHHHhcCCCCc
Q 017319 321 IEHNCCVCMVRHK----GAAFIPCGHTFCRLCSRELWVQRGNCP 360 (373)
Q Consensus 321 ~~l~CpICle~~~----~pv~LPCGH~FC~sCI~rwlr~s~~CP 360 (373)
..+.|.||+..|. .|+.+-|||+.|..|+...+.. .||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~--scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA--SCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc--cCC
Confidence 3467899987774 5788889999999999887654 566
No 89
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.21 E-value=0.22 Score=49.80 Aligned_cols=37 Identities=35% Similarity=0.738 Sum_probs=31.7
Q ss_pred CCccccccccccccccEEecc----CCcchHhHHHHHHhcC
Q 017319 320 GIEHNCCVCMVRHKGAAFIPC----GHTFCRLCSRELWVQR 356 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv~LPC----GH~FC~sCI~rwlr~s 356 (373)
...+.|.+|.+.+.+..+..| .|.||+.|..+..+..
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 355889999999999989888 5889999999888765
No 90
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.54 E-value=0.27 Score=51.14 Aligned_cols=30 Identities=33% Similarity=0.808 Sum_probs=24.8
Q ss_pred EEeccCCcchHhHHHHHHhcC--CCCcccccc
Q 017319 336 AFIPCGHTFCRLCSRELWVQR--GNCPLCNGF 365 (373)
Q Consensus 336 v~LPCGH~FC~sCI~rwlr~s--~~CPlCRa~ 365 (373)
+.+.|||.|...||.+|+.+. +.||.|...
T Consensus 23 vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 23 VSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred eeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 567899999999999999743 569999643
No 91
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=86.04 E-value=0.2 Score=54.98 Aligned_cols=46 Identities=26% Similarity=0.717 Sum_probs=38.6
Q ss_pred CccccccccccccccEEeccCCcchHhHHHHHHhcC---CCCcccccch
Q 017319 321 IEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQR---GNCPLCNGFI 366 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s---~~CPlCRa~i 366 (373)
....|+||+..+..++.+.|-|.||..|+...+... ..||+|+..+
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 457899999999999999999999999987776554 4699998554
No 92
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=83.47 E-value=1 Score=32.54 Aligned_cols=38 Identities=21% Similarity=0.552 Sum_probs=23.3
Q ss_pred cccccccccccEEec---cCCcchHhHHHHHHhcCC--CCccc
Q 017319 325 CCVCMVRHKGAAFIP---CGHTFCRLCSRELWVQRG--NCPLC 362 (373)
Q Consensus 325 CpICle~~~~pv~LP---CGH~FC~sCI~rwlr~s~--~CPlC 362 (373)
|.+|.+.....+.=+ |+-.++..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888777665544 888899999999988765 69987
No 93
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.50 E-value=0.74 Score=44.61 Aligned_cols=33 Identities=30% Similarity=0.717 Sum_probs=26.5
Q ss_pred ccEEeccCCcchHhHHHHHHhcC-CCCcccccch
Q 017319 334 GAAFIPCGHTFCRLCSRELWVQR-GNCPLCNGFI 366 (373)
Q Consensus 334 ~pv~LPCGH~FC~sCI~rwlr~s-~~CPlCRa~i 366 (373)
.|..+.|||.||..|+.+.+... ..||.||...
T Consensus 21 ~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 21 IPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 34556699999999999888765 4699999873
No 94
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=82.40 E-value=1.3 Score=40.80 Aligned_cols=46 Identities=20% Similarity=0.446 Sum_probs=33.7
Q ss_pred CccccccccccccccEEeccCCc-----chHhHHHHHHhcC--CCCcccccchh
Q 017319 321 IEHNCCVCMVRHKGAAFIPCGHT-----FCRLCSRELWVQR--GNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LPCGH~-----FC~sCI~rwlr~s--~~CPlCRa~i~ 367 (373)
....|-||++... ....||... .+..|+.+|...+ ..|++|+..+.
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 4567999998764 334576542 3999999999866 46999987653
No 95
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=81.48 E-value=0.97 Score=45.91 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=35.6
Q ss_pred Ccccccccccccc---ccEEeccCCcchHhHHHHHHhcC---CCCcccccc
Q 017319 321 IEHNCCVCMVRHK---GAAFIPCGHTFCRLCSRELWVQR---GNCPLCNGF 365 (373)
Q Consensus 321 ~~l~CpICle~~~---~pv~LPCGH~FC~sCI~rwlr~s---~~CPlCRa~ 365 (373)
.-+.||+-.+... .|+++.|||++-..-+....++. +.||.|-..
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 5578998766553 68999999999999998887765 679999543
No 96
>PHA02862 5L protein; Provisional
Probab=78.57 E-value=1.9 Score=39.39 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=32.7
Q ss_pred cccccccccccccEEeccCCc-----chHhHHHHHHhcC--CCCcccccchh
Q 017319 323 HNCCVCMVRHKGAAFIPCGHT-----FCRLCSRELWVQR--GNCPLCNGFIL 367 (373)
Q Consensus 323 l~CpICle~~~~pv~LPCGH~-----FC~sCI~rwlr~s--~~CPlCRa~i~ 367 (373)
..|-||++.-... .-||... .|..|+.+|+... ..|++|+.++.
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 4699999876543 4677542 4999999999765 46999987653
No 97
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=78.54 E-value=2.4 Score=31.54 Aligned_cols=43 Identities=23% Similarity=0.301 Sum_probs=21.3
Q ss_pred cccccccccccccEEec-cCCcchHhH--HHHHHhcC--CCCcccccc
Q 017319 323 HNCCVCMVRHKGAAFIP-CGHTFCRLC--SRELWVQR--GNCPLCNGF 365 (373)
Q Consensus 323 l~CpICle~~~~pv~LP-CGH~FC~sC--I~rwlr~s--~~CPlCRa~ 365 (373)
+.|+|.+..+..|+... |.|.-|..= ........ -.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 67999999999888874 999866543 22222222 369999763
No 98
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=77.41 E-value=0.45 Score=46.50 Aligned_cols=51 Identities=27% Similarity=0.390 Sum_probs=25.2
Q ss_pred CCccccccccccccccEEecc---C--CcchHhHHHHHHhcCCCCcccccchhhhh
Q 017319 320 GIEHNCCVCMVRHKGAAFIPC---G--HTFCRLCSRELWVQRGNCPLCNGFILEIL 370 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv~LPC---G--H~FC~sCI~rwlr~s~~CPlCRa~i~evL 370 (373)
+....||||-....-.++..= | |.+|..|-..|...+..||.|...-...+
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l 225 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHEKL 225 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-EE
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCcce
Confidence 345789999987765544443 4 45799999999999999999976544433
No 99
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=77.26 E-value=1.4 Score=49.58 Aligned_cols=48 Identities=23% Similarity=0.481 Sum_probs=36.0
Q ss_pred CCcccccccccccccc-EEe---ccCCcchHhHHHHHHhcC-------CCCcccccchh
Q 017319 320 GIEHNCCVCMVRHKGA-AFI---PCGHTFCRLCSRELWVQR-------GNCPLCNGFIL 367 (373)
Q Consensus 320 ~~~l~CpICle~~~~p-v~L---PCGH~FC~sCI~rwlr~s-------~~CPlCRa~i~ 367 (373)
...+.|.||.+.+... -+. .|-|+|+..||.+|-+.. -+||.|.....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 4678999999988532 122 477999999999998764 36999985443
No 100
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.59 E-value=1.4 Score=45.23 Aligned_cols=36 Identities=28% Similarity=0.794 Sum_probs=25.9
Q ss_pred Ccccccccccccccc----EEeccCCcchHhHHHHHHhcC
Q 017319 321 IEHNCCVCMVRHKGA----AFIPCGHTFCRLCSRELWVQR 356 (373)
Q Consensus 321 ~~l~CpICle~~~~p----v~LPCGH~FC~sCI~rwlr~s 356 (373)
....|.||+...... ....|+|.||..|+.++....
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 467899999433221 244699999999999887643
No 101
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.52 E-value=2.2 Score=42.16 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=30.3
Q ss_pred CCccccccccccccccEEeccCCcchHhHHHHHHh
Q 017319 320 GIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWV 354 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr 354 (373)
.....|+.|++.+.+|+..+=||.||..||.++.-
T Consensus 41 K~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred CCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 34567889999999999999999999999988753
No 102
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.25 E-value=2.2 Score=44.37 Aligned_cols=37 Identities=24% Similarity=0.578 Sum_probs=30.9
Q ss_pred CCccccccccccccc-cEEeccCCcchHhHHHHHHhcC
Q 017319 320 GIEHNCCVCMVRHKG-AAFIPCGHTFCRLCSRELWVQR 356 (373)
Q Consensus 320 ~~~l~CpICle~~~~-pv~LPCGH~FC~sCI~rwlr~s 356 (373)
.....|.||...+.. .+.+.|||.||..|+..++...
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhhe
Confidence 455789999999875 6777899999999999887654
No 103
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=72.50 E-value=2.5 Score=47.54 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=33.1
Q ss_pred cccccccccccc-------cEEeccCCcchHhHHHHHHhcC------CCCcccccchhhhhc
Q 017319 323 HNCCVCMVRHKG-------AAFIPCGHTFCRLCSRELWVQR------GNCPLCNGFILEILD 371 (373)
Q Consensus 323 l~CpICle~~~~-------pv~LPCGH~FC~sCI~rwlr~s------~~CPlCRa~i~evL~ 371 (373)
..|.||...+.. ..+-.|+|.||..||..|..+. ..|++|...|..+-+
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR 158 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR 158 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh
Confidence 445555554443 2222499999999999998754 358999887765543
No 104
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=71.91 E-value=2.4 Score=43.14 Aligned_cols=52 Identities=4% Similarity=-0.184 Sum_probs=42.1
Q ss_pred CCCccccccccccccccEEeccCCc-chHhHHHHHHhcCCCCcccccchhhhhcc
Q 017319 319 GGIEHNCCVCMVRHKGAAFIPCGHT-FCRLCSRELWVQRGNCPLCNGFILEILDI 372 (373)
Q Consensus 319 ~~~~l~CpICle~~~~pv~LPCGH~-FC~sCI~rwlr~s~~CPlCRa~i~evL~I 372 (373)
....+.|.+|-.-+...+..+|+|. ||..|.. +.....||.|......+++|
T Consensus 340 ~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 340 LMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred chhhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccceeeeec
Confidence 3455789999988877788899997 8999987 55567899999888777765
No 105
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=63.80 E-value=1.7 Score=43.69 Aligned_cols=45 Identities=22% Similarity=0.395 Sum_probs=33.2
Q ss_pred CccccccccccccccEEe----ccC--CcchHhHHHHHHhcCCCCcccccc
Q 017319 321 IEHNCCVCMVRHKGAAFI----PCG--HTFCRLCSRELWVQRGNCPLCNGF 365 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~L----PCG--H~FC~sCI~rwlr~s~~CPlCRa~ 365 (373)
....||||-....-.++. .=| +.+|..|-.+|...+..||.|...
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 345899999877533222 234 346999999999999999999764
No 106
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=63.67 E-value=5.2 Score=29.31 Aligned_cols=38 Identities=21% Similarity=0.628 Sum_probs=24.0
Q ss_pred ccccccccc--ccEEeccCC-----cchHhHHHHHHhcC--CCCccc
Q 017319 325 CCVCMVRHK--GAAFIPCGH-----TFCRLCSRELWVQR--GNCPLC 362 (373)
Q Consensus 325 CpICle~~~--~pv~LPCGH-----~FC~sCI~rwlr~s--~~CPlC 362 (373)
|-||++... .+...||.- ..+..|+.+|+... ..|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 678887654 245668752 35899999999854 568887
No 107
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=62.94 E-value=6.1 Score=44.76 Aligned_cols=46 Identities=22% Similarity=0.499 Sum_probs=35.9
Q ss_pred Cccccccccccc--cccEEeccCCc-----chHhHHHHHHhcC--CCCcccccch
Q 017319 321 IEHNCCVCMVRH--KGAAFIPCGHT-----FCRLCSRELWVQR--GNCPLCNGFI 366 (373)
Q Consensus 321 ~~l~CpICle~~--~~pv~LPCGH~-----FC~sCI~rwlr~s--~~CPlCRa~i 366 (373)
++..|.||...- .+|.+.||... .+..|+.+|+.-+ ..|-+|..++
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~ 65 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY 65 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence 447899998644 57888898754 5999999999765 5699997665
No 108
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=62.49 E-value=4.6 Score=41.08 Aligned_cols=48 Identities=25% Similarity=0.733 Sum_probs=37.4
Q ss_pred Ccccccccccccc--ccEEe--ccCCcchHhHHHHHHhcCCCCcccccchhh
Q 017319 321 IEHNCCVCMVRHK--GAAFI--PCGHTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 321 ~~l~CpICle~~~--~pv~L--PCGH~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
..-.|+||..... +..++ +|++..|..|+........+||.||.....
T Consensus 248 v~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred cCCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 4468999998662 34445 478889999999998888999999966543
No 109
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.64 E-value=4.7 Score=40.81 Aligned_cols=27 Identities=30% Similarity=0.951 Sum_probs=20.4
Q ss_pred cCCcchHhHHHHHHhcC-------------CCCcccccch
Q 017319 340 CGHTFCRLCSRELWVQR-------------GNCPLCNGFI 366 (373)
Q Consensus 340 CGH~FC~sCI~rwlr~s-------------~~CPlCRa~i 366 (373)
|....|..|+.+|+..+ ..||+||+.+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 55567999998886533 5799999865
No 110
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.79 E-value=6.4 Score=39.08 Aligned_cols=48 Identities=21% Similarity=0.332 Sum_probs=34.5
Q ss_pred CCCccccccccccc----cccEEeccCCcchHhHHHHHHhcCCCCcccccchhh
Q 017319 319 GGIEHNCCVCMVRH----KGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 319 ~~~~l~CpICle~~----~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
....+.|+|-.-.+ +-.++.+|||+|-..-+.+.. ...|++|.+.+..
T Consensus 108 ~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~ 159 (293)
T KOG3113|consen 108 QRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQE 159 (293)
T ss_pred ccceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccc
Confidence 34668999865544 334556899999888777653 4689999987653
No 111
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=59.06 E-value=3.5 Score=41.54 Aligned_cols=44 Identities=30% Similarity=0.542 Sum_probs=33.3
Q ss_pred CccccccccccccccEE-e--ccCC--cchHhHHHHHHhcCCCCccccc
Q 017319 321 IEHNCCVCMVRHKGAAF-I--PCGH--TFCRLCSRELWVQRGNCPLCNG 364 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~-L--PCGH--~FC~sCI~rwlr~s~~CPlCRa 364 (373)
....||||-....-.+. + .=|+ .+|..|-..|...+..||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 45789999988754332 2 2343 3699999999999999999975
No 112
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=58.14 E-value=5.9 Score=44.57 Aligned_cols=39 Identities=26% Similarity=0.588 Sum_probs=28.0
Q ss_pred cccccccccccc--cEEeccCCcchHhHHHHHHhcCCCCcc
Q 017319 323 HNCCVCMVRHKG--AAFIPCGHTFCRLCSRELWVQRGNCPL 361 (373)
Q Consensus 323 l~CpICle~~~~--pv~LPCGH~FC~sCI~rwlr~s~~CPl 361 (373)
+.|.||--.... -+...|+|+.+..|..+|++..-.||.
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeeEeeEeeccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 345555544432 234579999999999999999878874
No 113
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=57.41 E-value=9.2 Score=39.18 Aligned_cols=47 Identities=28% Similarity=0.543 Sum_probs=30.8
Q ss_pred Ccccccccccccc-------------------ccEEeccCCcchHhHHHHHHhcC---------CCCcccccchh
Q 017319 321 IEHNCCVCMVRHK-------------------GAAFIPCGHTFCRLCSRELWVQR---------GNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~-------------------~pv~LPCGH~FC~sCI~rwlr~s---------~~CPlCRa~i~ 367 (373)
....|++|+..-. .-.+.||||+.-..-..-|.+.. ..||+|-..+.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 4578999986321 12345999986666666665533 45999977664
No 114
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=57.28 E-value=3.5 Score=43.01 Aligned_cols=47 Identities=23% Similarity=0.481 Sum_probs=0.0
Q ss_pred cccccccccccc-------------------ccEEeccCCcchHhHHHHHHhcC---------CCCcccccchhh
Q 017319 322 EHNCCVCMVRHK-------------------GAAFIPCGHTFCRLCSRELWVQR---------GNCPLCNGFILE 368 (373)
Q Consensus 322 ~l~CpICle~~~-------------------~pv~LPCGH~FC~sCI~rwlr~s---------~~CPlCRa~i~e 368 (373)
...|++|+..-. .-++-||||..-.....-|.+.. ..||+|-..+..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 578999995221 12456999988777777776543 369999887753
No 115
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.46 E-value=3.7 Score=41.50 Aligned_cols=53 Identities=26% Similarity=0.616 Sum_probs=43.2
Q ss_pred cCCCccccccccccccccEEec-cCCcchHhHHHHHHhcCCCCcccccchhhhh
Q 017319 318 AGGIEHNCCVCMVRHKGAAFIP-CGHTFCRLCSRELWVQRGNCPLCNGFILEIL 370 (373)
Q Consensus 318 ~~~~~l~CpICle~~~~pv~LP-CGH~FC~sCI~rwlr~s~~CPlCRa~i~evL 370 (373)
....+..|-||...+.-+.... |+|.||.-|...|......|+.|+..+..++
T Consensus 101 ~~~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv~ 154 (324)
T KOG0824|consen 101 FQQDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISPVL 154 (324)
T ss_pred ccCCccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcCcee
Confidence 3345678999999998777765 9999999999999988888999987765543
No 116
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=53.25 E-value=5.8 Score=33.43 Aligned_cols=37 Identities=27% Similarity=0.852 Sum_probs=28.0
Q ss_pred ccccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccccchh
Q 017319 322 EHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 322 ~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
...|-||...+.++ ||.||..|..+ ...|.+|...+.
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAYk----kGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAYK----KGICAMCGKKIL 80 (90)
T ss_pred CccccccccccccC-----CCccChhhhcc----cCcccccCCeec
Confidence 34799999765543 78899999754 378999987764
No 117
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.37 E-value=7.3 Score=40.17 Aligned_cols=42 Identities=26% Similarity=0.656 Sum_probs=29.1
Q ss_pred Ccccccccccccc-----ccEEeccCCcchHhHHHHHHhcCCCCccc
Q 017319 321 IEHNCCVCMVRHK-----GAAFIPCGHTFCRLCSRELWVQRGNCPLC 362 (373)
Q Consensus 321 ~~l~CpICle~~~-----~pv~LPCGH~FC~sCI~rwlr~s~~CPlC 362 (373)
.-..|++|.-.+. ....-.|||.||..|...|......|..|
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred hcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 3467888887653 22333599999999999887776655444
No 118
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=50.65 E-value=13 Score=41.78 Aligned_cols=45 Identities=20% Similarity=0.459 Sum_probs=34.9
Q ss_pred ccccccccccccccEEec--cCCcchHhHHHHHHhcCCCCcc--cccch
Q 017319 322 EHNCCVCMVRHKGAAFIP--CGHTFCRLCSRELWVQRGNCPL--CNGFI 366 (373)
Q Consensus 322 ~l~CpICle~~~~pv~LP--CGH~FC~sCI~rwlr~s~~CPl--CRa~i 366 (373)
...|.+|-..++...+.. |||..+..|+..|+.....||. |...+
T Consensus 779 ~~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~c 827 (839)
T KOG0269|consen 779 SAKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHLC 827 (839)
T ss_pred hcCceeecceeeeeEeecccccccccHHHHHHHHhcCCCCccccCCccc
Confidence 346888888777655553 9999999999999998888877 64433
No 119
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=49.41 E-value=10 Score=36.68 Aligned_cols=24 Identities=25% Similarity=0.660 Sum_probs=21.1
Q ss_pred chHhHHHHHHhcCCCCcccccchh
Q 017319 344 FCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 344 FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
-|.+|...+.++...||+|++.-+
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsR 219 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSR 219 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccc
Confidence 599999999999999999987644
No 120
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=48.57 E-value=6.6 Score=41.18 Aligned_cols=35 Identities=20% Similarity=0.454 Sum_probs=25.5
Q ss_pred CccccccccccccccEEe--ccCCcchHhHHHHHHhc
Q 017319 321 IEHNCCVCMVRHKGAAFI--PCGHTFCRLCSRELWVQ 355 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~L--PCGH~FC~sCI~rwlr~ 355 (373)
....|+||+-++-....+ -|...+|..|+.++...
T Consensus 73 r~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~~~~ 109 (482)
T KOG2789|consen 73 RKTECPICFLYYPSAKNLVRCCSETICGECFAPFGCY 109 (482)
T ss_pred ccccCceeeeecccccchhhhhccchhhhheecccCC
Confidence 446899999888654443 37778999998776543
No 121
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.35 E-value=3.4 Score=43.10 Aligned_cols=48 Identities=17% Similarity=0.327 Sum_probs=38.8
Q ss_pred Ccccccccccccc----ccEEeccCCcchHhHHHHHHhcCCCCcccccchhh
Q 017319 321 IEHNCCVCMVRHK----GAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 321 ~~l~CpICle~~~----~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
....|.||...++ ....+-|||.+...|+.+|+-....||.|+..+.+
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 3456999998775 34456799999999999999988889999877654
No 122
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=42.99 E-value=1.8 Score=34.91 Aligned_cols=41 Identities=22% Similarity=0.567 Sum_probs=19.5
Q ss_pred cccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccccchhh
Q 017319 323 HNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 323 l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
..||.|...+...- +|.+|..|...+ .....||-|..++..
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~~-~~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKDY-KKEAFCPDCGQPLEV 42 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--EE-EEEEE-TTT-SB-EE
T ss_pred CcCCCCCCccEEeC----CEEECccccccc-eecccCCCcccHHHH
Confidence 56888887654221 566777776543 222568888776643
No 123
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.33 E-value=17 Score=36.28 Aligned_cols=47 Identities=19% Similarity=0.535 Sum_probs=32.7
Q ss_pred Ccccccccccccccc----EEeccCCc-----chHhHHHHHHhcC--------CCCcccccchh
Q 017319 321 IEHNCCVCMVRHKGA----AFIPCGHT-----FCRLCSRELWVQR--------GNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~~p----v~LPCGH~-----FC~sCI~rwlr~s--------~~CPlCRa~i~ 367 (373)
.+..|-||+..-.+- -+-||... .+..|+.+|...+ ..||.|+....
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 457899999866542 22366432 5999999998654 35999987644
No 124
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=38.10 E-value=18 Score=35.11 Aligned_cols=46 Identities=22% Similarity=0.455 Sum_probs=35.3
Q ss_pred ccccccccccccccEE-eccCCcchHhHHHHHHhcCCCCcccccchh
Q 017319 322 EHNCCVCMVRHKGAAF-IPCGHTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 322 ~l~CpICle~~~~pv~-LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
-..|.+|.......+. -.|+-.++..|+..++.....||.|..-..
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~ 227 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWT 227 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhcccC
Confidence 3579999987765443 247777899999999999889999964443
No 125
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=36.73 E-value=21 Score=35.20 Aligned_cols=27 Identities=22% Similarity=0.535 Sum_probs=22.2
Q ss_pred CCcchHhHHHHHHhcCCCCcccccchh
Q 017319 341 GHTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 341 GH~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
....|..|...+.++...||+|++..+
T Consensus 248 pMK~ClsChqqIHRNAPiCPlCKaKsR 274 (286)
T KOG4451|consen 248 PMKVCLSCHQQIHRNAPICPLCKAKSR 274 (286)
T ss_pred cchHHHHHHHHHhcCCCCCcchhhccc
Confidence 344699999999999999999986544
No 126
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.62 E-value=7.1 Score=37.85 Aligned_cols=44 Identities=27% Similarity=0.622 Sum_probs=34.0
Q ss_pred cccccccccccc------ccEEec--------cCCcchHhHHHHHHhcC-CCCcccccc
Q 017319 322 EHNCCVCMVRHK------GAAFIP--------CGHTFCRLCSRELWVQR-GNCPLCNGF 365 (373)
Q Consensus 322 ~l~CpICle~~~------~pv~LP--------CGH~FC~sCI~rwlr~s-~~CPlCRa~ 365 (373)
...|.||...+. .|.++. |||..|..|+...+... ..||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 356889887765 244555 99999999999987765 479999864
No 127
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=35.97 E-value=21 Score=28.75 Aligned_cols=13 Identities=31% Similarity=0.836 Sum_probs=9.3
Q ss_pred cchHhHHHHHHhc
Q 017319 343 TFCRLCSRELWVQ 355 (373)
Q Consensus 343 ~FC~sCI~rwlr~ 355 (373)
.||..|+.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999874
No 128
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=32.23 E-value=25 Score=36.25 Aligned_cols=25 Identities=32% Similarity=0.773 Sum_probs=17.9
Q ss_pred ccCCcchHhHHHHHHhcCCCCcccc
Q 017319 339 PCGHTFCRLCSRELWVQRGNCPLCN 363 (373)
Q Consensus 339 PCGH~FC~sCI~rwlr~s~~CPlCR 363 (373)
.|.+.||..|-.=....-..||.|.
T Consensus 350 ~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 350 SCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred hccceeeccchHHHHhhhhcCCCcC
Confidence 4788888888655444446788886
No 129
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=32.14 E-value=15 Score=37.54 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=36.3
Q ss_pred CccccccccccccccEEeccCCc-chHhHHHHH-HhcCCCCcccccchhhh
Q 017319 321 IEHNCCVCMVRHKGAAFIPCGHT-FCRLCSREL-WVQRGNCPLCNGFILEI 369 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LPCGH~-FC~sCI~rw-lr~s~~CPlCRa~i~ev 369 (373)
....|.+|+..-......+|+|. ||..|..+- .+....|++|-..+.+.
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra 185 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRA 185 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhh
Confidence 45679999987777777899996 999997665 34445699997655543
No 130
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=31.61 E-value=30 Score=26.30 Aligned_cols=25 Identities=32% Similarity=0.751 Sum_probs=14.1
Q ss_pred ccCCcchHhHHHHHHhcCCCCcccc
Q 017319 339 PCGHTFCRLCSRELWVQRGNCPLCN 363 (373)
Q Consensus 339 PCGH~FC~sCI~rwlr~s~~CPlCR 363 (373)
.|++.||..|=.=....-..||-|.
T Consensus 26 ~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCccccCcChhhhccccCCcCCC
Confidence 4889999999654444446799884
No 131
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=29.11 E-value=18 Score=37.88 Aligned_cols=42 Identities=21% Similarity=0.417 Sum_probs=0.0
Q ss_pred cccccccccccc-------------c-cEEeccCCcchHhHHHHHHh------cCCCCcccccch
Q 017319 322 EHNCCVCMVRHK-------------G-AAFIPCGHTFCRLCSRELWV------QRGNCPLCNGFI 366 (373)
Q Consensus 322 ~l~CpICle~~~-------------~-pv~LPCGH~FC~sCI~rwlr------~s~~CPlCRa~i 366 (373)
...|+|=+..+. . -+.+.|||++... .|.. ....||+|+..-
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g 338 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVG 338 (416)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCccccC
Confidence 356887665442 1 2456899986432 3432 135799998653
No 132
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=28.85 E-value=47 Score=27.59 Aligned_cols=48 Identities=23% Similarity=0.506 Sum_probs=19.1
Q ss_pred Ccccccccccccc----ccEEe---ccCCcchHhHHHHHHhcC-CCCcccccchhh
Q 017319 321 IEHNCCVCMVRHK----GAAFI---PCGHTFCRLCSRELWVQR-GNCPLCNGFILE 368 (373)
Q Consensus 321 ~~l~CpICle~~~----~pv~L---PCGH~FC~sCI~rwlr~s-~~CPlCRa~i~e 368 (373)
....|.||-+.+- .-++. .|+-..|..|+.--.+.. ..||.|+.....
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 3457999998662 22444 456667999986554443 569999876653
No 133
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=27.03 E-value=44 Score=26.11 Aligned_cols=43 Identities=30% Similarity=0.697 Sum_probs=27.7
Q ss_pred cccccccccccc--EEeccCC--cchHhHHHHHHhcCCCCcccccchhh
Q 017319 324 NCCVCMVRHKGA--AFIPCGH--TFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 324 ~CpICle~~~~p--v~LPCGH--~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
.|-.|-..+..- -..=|.+ +||..|....+. ..||-|...+..
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~--~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLN--GVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc--CcCcCCCCcccc
Confidence 366666655321 1222443 599999998873 689999887653
No 134
>PLN02189 cellulose synthase
Probab=26.33 E-value=45 Score=38.94 Aligned_cols=47 Identities=28% Similarity=0.588 Sum_probs=31.4
Q ss_pred Ccccccccccccc----ccEEec---cCCcchHhHHHHHHhcC-CCCcccccchh
Q 017319 321 IEHNCCVCMVRHK----GAAFIP---CGHTFCRLCSRELWVQR-GNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~----~pv~LP---CGH~FC~sCI~rwlr~s-~~CPlCRa~i~ 367 (373)
....|.||-+.+- .-.+.. |+--.|..|..--.+.. ..||.|+....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3458999999763 224444 55557999995433332 46999998766
No 135
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=25.83 E-value=47 Score=34.67 Aligned_cols=9 Identities=33% Similarity=0.748 Sum_probs=7.4
Q ss_pred CCCcccccc
Q 017319 357 GNCPLCNGF 365 (373)
Q Consensus 357 ~~CPlCRa~ 365 (373)
++||.||+.
T Consensus 68 KRCP~CRFQ 76 (475)
T KOG4218|consen 68 KRCPSCRFQ 76 (475)
T ss_pred ccCCchhHH
Confidence 689999864
No 136
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=25.26 E-value=42 Score=33.89 Aligned_cols=44 Identities=25% Similarity=0.511 Sum_probs=29.9
Q ss_pred CccccccccccccccEEe----ccCCcc--hHhHHHHHHhcCCCCccccc
Q 017319 321 IEHNCCVCMVRHKGAAFI----PCGHTF--CRLCSRELWVQRGNCPLCNG 364 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~L----PCGH~F--C~sCI~rwlr~s~~CPlCRa 364 (373)
....||+|-.......+. .-|-.| |.-|...|...+..|--|..
T Consensus 184 ~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR~KC~nC~~ 233 (308)
T COG3058 184 SRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVRVKCSNCEQ 233 (308)
T ss_pred ccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHHHHhccccc
Confidence 345799999887643222 123333 99999999988877777754
No 137
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.90 E-value=48 Score=27.36 Aligned_cols=25 Identities=36% Similarity=0.829 Sum_probs=18.9
Q ss_pred CCcchHhHHHHHHhcCCCCcccccchh
Q 017319 341 GHTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 341 GH~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
-|+||..|....+. ..||-|...+.
T Consensus 28 EcTFCadCae~~l~--g~CPnCGGelv 52 (84)
T COG3813 28 ECTFCADCAENRLH--GLCPNCGGELV 52 (84)
T ss_pred eeehhHhHHHHhhc--CcCCCCCchhh
Confidence 36799999986543 68999976654
No 138
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=24.66 E-value=71 Score=30.60 Aligned_cols=46 Identities=20% Similarity=0.585 Sum_probs=32.9
Q ss_pred ccccccccccccc----cEEeccCCc-----chHhHHHHHHhcC--CCCcccccchh
Q 017319 322 EHNCCVCMVRHKG----AAFIPCGHT-----FCRLCSRELWVQR--GNCPLCNGFIL 367 (373)
Q Consensus 322 ~l~CpICle~~~~----pv~LPCGH~-----FC~sCI~rwlr~s--~~CPlCRa~i~ 367 (373)
...|-||...... +...||... .+..|+..|...+ ..|.+|...+.
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 4679999985532 455676432 4899999999844 56999976554
No 139
>PF14353 CpXC: CpXC protein
Probab=24.39 E-value=53 Score=28.10 Aligned_cols=45 Identities=11% Similarity=0.111 Sum_probs=22.0
Q ss_pred cccccccccccccEEeccCCcchHhHHHHHHhcC---CCCcccccchh
Q 017319 323 HNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQR---GNCPLCNGFIL 367 (373)
Q Consensus 323 l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s---~~CPlCRa~i~ 367 (373)
++|+.|...+...+...-.-..-..=..+.+... .+||.|...+.
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 5788888877533332221111112222333222 46999976653
No 140
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=24.32 E-value=57 Score=30.33 Aligned_cols=15 Identities=33% Similarity=0.769 Sum_probs=11.9
Q ss_pred CCcccccchhhhhcc
Q 017319 358 NCPLCNGFILEILDI 372 (373)
Q Consensus 358 ~CPlCRa~i~evL~I 372 (373)
.||+||..+.+...+
T Consensus 82 ~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 82 ACPLCRGEVKGWTVV 96 (162)
T ss_pred cCccccCceeceEEc
Confidence 499999999876543
No 141
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=23.97 E-value=48 Score=24.44 Aligned_cols=39 Identities=18% Similarity=0.474 Sum_probs=21.4
Q ss_pred ccccccccccccccEEeccCCcchHhHHHHHHhc--CCCCcccccchh
Q 017319 322 EHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQ--RGNCPLCNGFIL 367 (373)
Q Consensus 322 ~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~--s~~CPlCRa~i~ 367 (373)
.+.||.|...+.... ++.-|....... ...||+|...+.
T Consensus 2 ~f~CP~C~~~~~~~~-------L~~H~~~~H~~~~~~v~CPiC~~~~~ 42 (54)
T PF05605_consen 2 SFTCPYCGKGFSESS-------LVEHCEDEHRSESKNVVCPICSSRVT 42 (54)
T ss_pred CcCCCCCCCccCHHH-------HHHHHHhHCcCCCCCccCCCchhhhh
Confidence 478999998443221 222233322221 246999987654
No 142
>PRK04023 DNA polymerase II large subunit; Validated
Probab=23.79 E-value=33 Score=39.98 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=30.3
Q ss_pred CccccccccccccccEEeccCC-----cchHhHHHHHHhcCCCCcccccchhh
Q 017319 321 IEHNCCVCMVRHKGAAFIPCGH-----TFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LPCGH-----~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
....|+-|-........-.||. .||..|-.. .....||.|...+..
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~--~~~y~CPKCG~El~~ 675 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIE--VEEDECEKCGREPTP 675 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccccCc--CCCCcCCCCCCCCCc
Confidence 3468999988764433334884 489999432 333569999876653
No 143
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.69 E-value=32 Score=35.89 Aligned_cols=20 Identities=35% Similarity=0.717 Sum_probs=13.7
Q ss_pred cEEeccCCcchHhHHHHHHh
Q 017319 335 AAFIPCGHTFCRLCSRELWV 354 (373)
Q Consensus 335 pv~LPCGH~FC~sCI~rwlr 354 (373)
.+.-.|||.||+.|...|..
T Consensus 179 ~v~C~~g~~FC~~C~~~~H~ 198 (444)
T KOG1815|consen 179 EVDCGCGHEFCFACGEESHS 198 (444)
T ss_pred ceeCCCCchhHhhccccccC
Confidence 34446888888888765543
No 144
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=23.67 E-value=30 Score=39.43 Aligned_cols=49 Identities=20% Similarity=0.360 Sum_probs=33.8
Q ss_pred CCCccccccccccccccEE--eccCCcchHhHHHHHHh-cC-----CCCcccccchh
Q 017319 319 GGIEHNCCVCMVRHKGAAF--IPCGHTFCRLCSRELWV-QR-----GNCPLCNGFIL 367 (373)
Q Consensus 319 ~~~~l~CpICle~~~~pv~--LPCGH~FC~sCI~rwlr-~s-----~~CPlCRa~i~ 367 (373)
......|-.|..-+.+... -.|++.+|..|+..|.- .. ..|++|+..+.
T Consensus 226 ~g~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~ 282 (889)
T KOG1356|consen 226 KGIREMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCN 282 (889)
T ss_pred cCcchhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcC
Confidence 4455779999987765332 35999999999999951 11 35777765443
No 145
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=23.45 E-value=58 Score=38.23 Aligned_cols=47 Identities=23% Similarity=0.533 Sum_probs=30.6
Q ss_pred Ccccccccccccc----ccEEec---cCCcchHhHHHHHHhcC-CCCcccccchh
Q 017319 321 IEHNCCVCMVRHK----GAAFIP---CGHTFCRLCSRELWVQR-GNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~----~pv~LP---CGH~FC~sCI~rwlr~s-~~CPlCRa~i~ 367 (373)
....|.||-+.+- .-.+.. |+--.|..|..--.+.. ..||.|+...+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 3357999998763 123444 55557999994333322 46999988765
No 146
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=23.45 E-value=24 Score=38.64 Aligned_cols=21 Identities=33% Similarity=0.792 Sum_probs=16.3
Q ss_pred ccCCcchHhHHHHHHhcCCCCccc
Q 017319 339 PCGHTFCRLCSRELWVQRGNCPLC 362 (373)
Q Consensus 339 PCGH~FC~sCI~rwlr~s~~CPlC 362 (373)
.|++.||..|+.+. ...||.|
T Consensus 536 ~C~avfH~~C~~r~---s~~CPrC 556 (580)
T KOG1829|consen 536 TCLAVFHKKCLRRK---SPCCPRC 556 (580)
T ss_pred HHHHHHHHHHHhcc---CCCCCch
Confidence 58999999997653 3449999
No 147
>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]. Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.41 E-value=61 Score=23.99 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=20.8
Q ss_pred CCCcchHHHHhhhcCCCCCCCCcCchhhHHHHHHHhh
Q 017319 30 APAGRTLLDIIRDEDPNGKNFGHKDRKSWKLFRDRLR 66 (373)
Q Consensus 30 ~~~~~tl~di~~~~~~~~~~~~~~d~~~w~~~~~~lr 66 (373)
.|.|-+|||+|-+ |-|..||-+-|-|-
T Consensus 14 ~ql~ESLLdrItR----------klr~gwKRl~~iLn 40 (45)
T PF02061_consen 14 PQLSESLLDRITR----------KLRDGWKRLWDILN 40 (45)
T ss_pred chhhHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 4578999999975 45778998877664
No 148
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.22 E-value=41 Score=30.59 Aligned_cols=22 Identities=27% Similarity=0.597 Sum_probs=16.9
Q ss_pred ccccccccccEEeccCCcchHh
Q 017319 326 CVCMVRHKGAAFIPCGHTFCRL 347 (373)
Q Consensus 326 pICle~~~~pv~LPCGH~FC~s 347 (373)
-||+..-...+.-.|||.||..
T Consensus 61 fi~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 61 FICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEEecccccEEEEeccccccCh
Confidence 3677777666777899999864
No 149
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.33 E-value=29 Score=32.60 Aligned_cols=25 Identities=20% Similarity=0.529 Sum_probs=17.8
Q ss_pred Ccccccccccccc---ccEEeccCCcch
Q 017319 321 IEHNCCVCMVRHK---GAAFIPCGHTFC 345 (373)
Q Consensus 321 ~~l~CpICle~~~---~pv~LPCGH~FC 345 (373)
.+-.|.||++.+. ....|||...|+
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLCIYH 203 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLCIYH 203 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEEEee
Confidence 3456999999885 456678865544
No 150
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=22.01 E-value=19 Score=26.37 Aligned_cols=15 Identities=33% Similarity=0.879 Sum_probs=12.7
Q ss_pred ccCCcchHhHHHHHH
Q 017319 339 PCGHTFCRLCSRELW 353 (373)
Q Consensus 339 PCGH~FC~sCI~rwl 353 (373)
.|++.||..|...|.
T Consensus 45 ~C~~~fC~~C~~~~H 59 (64)
T smart00647 45 KCGFSFCFRCKVPWH 59 (64)
T ss_pred CCCCeECCCCCCcCC
Confidence 589999999988874
No 151
>PLN02436 cellulose synthase A
Probab=21.90 E-value=54 Score=38.46 Aligned_cols=47 Identities=23% Similarity=0.583 Sum_probs=31.2
Q ss_pred Ccccccccccccc----ccEEec---cCCcchHhHHHHHHhcC-CCCcccccchh
Q 017319 321 IEHNCCVCMVRHK----GAAFIP---CGHTFCRLCSRELWVQR-GNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~----~pv~LP---CGH~FC~sCI~rwlr~s-~~CPlCRa~i~ 367 (373)
....|.||-+.+- .-.+.. |+-..|..|..--.+.. ..||.|+....
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3458999999762 224444 55557999995433322 46999998765
No 152
>PLN02400 cellulose synthase
Probab=21.30 E-value=48 Score=38.90 Aligned_cols=46 Identities=24% Similarity=0.547 Sum_probs=30.3
Q ss_pred Ccccccccccccc----ccEEe---ccCCcchHhHHHHHHhcC--CCCcccccchh
Q 017319 321 IEHNCCVCMVRHK----GAAFI---PCGHTFCRLCSRELWVQR--GNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~----~pv~L---PCGH~FC~sCI~rwlr~s--~~CPlCRa~i~ 367 (373)
....|.||-+.+- .-.+. .|+--.|..|.. +-++. ..||.|+...+
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE-YERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYE-YERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhh-eecccCCccCcccCCccc
Confidence 3458999998763 12344 455557999984 33332 46999987765
No 153
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.15 E-value=52 Score=28.20 Aligned_cols=14 Identities=29% Similarity=0.755 Sum_probs=11.9
Q ss_pred cchHhHHHHHHhcC
Q 017319 343 TFCRLCSRELWVQR 356 (373)
Q Consensus 343 ~FC~sCI~rwlr~s 356 (373)
.||..|+..|++..
T Consensus 42 gFCRNCLs~Wy~ea 55 (104)
T COG3492 42 GFCRNCLSNWYREA 55 (104)
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999998754
No 154
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=20.99 E-value=29 Score=26.40 Aligned_cols=31 Identities=26% Similarity=0.580 Sum_probs=15.4
Q ss_pred ccccccccccccc----EEeccCCcchHhHHHHHH
Q 017319 323 HNCCVCMVRHKGA----AFIPCGHTFCRLCSRELW 353 (373)
Q Consensus 323 l~CpICle~~~~p----v~LPCGH~FC~sCI~rwl 353 (373)
..|.+|...|.-- .--.||+.||..|.....
T Consensus 10 ~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 10 SNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 5699999988421 112699999999986443
No 155
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=20.91 E-value=53 Score=28.33 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=10.3
Q ss_pred CCCcccccccccccc
Q 017319 319 GGIEHNCCVCMVRHK 333 (373)
Q Consensus 319 ~~~~l~CpICle~~~ 333 (373)
.+.+..|+-|...|+
T Consensus 6 lGtKR~Cp~CG~kFY 20 (108)
T PF09538_consen 6 LGTKRTCPSCGAKFY 20 (108)
T ss_pred cCCcccCCCCcchhc
Confidence 446677887777664
No 156
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=20.47 E-value=36 Score=35.10 Aligned_cols=31 Identities=19% Similarity=0.554 Sum_probs=16.7
Q ss_pred EEeccCCcc--hHh-HHHHHHhcCCCCcccccch
Q 017319 336 AFIPCGHTF--CRL-CSRELWVQRGNCPLCNGFI 366 (373)
Q Consensus 336 v~LPCGH~F--C~s-CI~rwlr~s~~CPlCRa~i 366 (373)
+.|.|||+- +.+ |-..--.....||+|+..-
T Consensus 318 vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~~g 351 (429)
T KOG3842|consen 318 VYLNCGHVHGYHNWGVRENTGQRERECPMCRVVG 351 (429)
T ss_pred EEEeccccccccccccccccCcccCcCCeeeeec
Confidence 557899973 321 1111111225699998643
No 157
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=20.47 E-value=70 Score=35.28 Aligned_cols=51 Identities=22% Similarity=0.312 Sum_probs=29.1
Q ss_pred ccCCCccccccccccccccEE-eccCCcchHhHHHHHHhcC----CCCcccccchh
Q 017319 317 NAGGIEHNCCVCMVRHKGAAF-IPCGHTFCRLCSRELWVQR----GNCPLCNGFIL 367 (373)
Q Consensus 317 ~~~~~~l~CpICle~~~~pv~-LPCGH~FC~sCI~rwlr~s----~~CPlCRa~i~ 367 (373)
.....-+.|+|+...+.-|.. ..|.|.-|+.-+.-...+. -.||+|...+.
T Consensus 301 t~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~ 356 (636)
T KOG2169|consen 301 TSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAP 356 (636)
T ss_pred ccceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCcccc
Confidence 344567899998876654332 3466665554432222222 25999976543
Done!