Query 017319
Match_columns 373
No_of_seqs 196 out of 1428
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 12:31:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017319.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017319hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ng2_A RNF4, snurf, ring finge 99.2 4.6E-12 1.6E-16 95.2 3.1 54 320-373 8-70 (71)
2 2csy_A Zinc finger protein 183 99.2 1E-11 3.5E-16 96.5 4.8 48 321-368 14-61 (81)
3 2d8t_A Dactylidin, ring finger 99.2 8.6E-12 2.9E-16 94.8 3.0 49 320-368 13-61 (71)
4 2xeu_A Ring finger protein 4; 99.2 9.2E-12 3.2E-16 91.4 2.9 53 321-373 2-63 (64)
5 4ayc_A E3 ubiquitin-protein li 99.2 9.8E-12 3.3E-16 106.2 3.3 46 323-368 54-99 (138)
6 2djb_A Polycomb group ring fin 99.1 2.1E-11 7.3E-16 92.8 4.2 49 320-368 13-62 (72)
7 2ea6_A Ring finger protein 4; 99.1 1.8E-11 6E-16 91.1 3.6 49 320-368 13-68 (69)
8 1t1h_A Gspef-atpub14, armadill 99.1 2.2E-11 7.7E-16 93.5 4.0 48 320-367 6-54 (78)
9 2yur_A Retinoblastoma-binding 99.1 3.3E-11 1.1E-15 92.5 4.7 49 319-367 12-63 (74)
10 2kiz_A E3 ubiquitin-protein li 99.1 4E-11 1.4E-15 90.1 4.7 51 321-371 13-66 (69)
11 3ztg_A E3 ubiquitin-protein li 99.1 3.4E-11 1.2E-15 95.2 4.5 48 319-366 10-60 (92)
12 2ysl_A Tripartite motif-contai 99.1 4.7E-11 1.6E-15 90.3 4.8 50 319-368 17-69 (73)
13 2ecy_A TNF receptor-associated 99.1 3.3E-11 1.1E-15 90.2 3.7 49 320-368 13-62 (66)
14 1chc_A Equine herpes virus-1 r 99.1 2.5E-11 8.7E-16 90.8 3.1 52 321-372 4-56 (68)
15 2ecn_A Ring finger protein 141 99.1 2.7E-11 9.1E-16 91.3 2.4 53 320-373 13-65 (70)
16 2ecw_A Tripartite motif-contai 99.1 6E-11 2E-15 91.2 4.2 48 320-367 17-70 (85)
17 2kr4_A Ubiquitin conjugation f 99.1 7.6E-11 2.6E-15 93.8 4.8 50 319-368 11-60 (85)
18 3fl2_A E3 ubiquitin-protein li 99.1 4.6E-11 1.6E-15 99.9 3.5 48 321-368 51-99 (124)
19 2ct2_A Tripartite motif protei 99.1 7.1E-11 2.4E-15 91.9 4.3 48 320-367 13-67 (88)
20 3lrq_A E3 ubiquitin-protein li 99.1 4.3E-11 1.5E-15 97.2 3.1 47 321-367 21-69 (100)
21 2ecm_A Ring finger and CHY zin 99.1 7E-11 2.4E-15 84.7 3.7 47 321-367 4-54 (55)
22 2vje_A E3 ubiquitin-protein li 99.1 3.4E-11 1.1E-15 91.1 2.1 53 321-373 7-62 (64)
23 2vje_B MDM4 protein; proto-onc 99.1 3E-11 1E-15 91.0 1.8 52 322-373 7-61 (63)
24 2ep4_A Ring finger protein 24; 99.1 7E-11 2.4E-15 89.9 3.6 52 320-371 13-67 (74)
25 2ecv_A Tripartite motif-contai 99.1 7.1E-11 2.4E-15 90.8 3.5 48 320-367 17-70 (85)
26 2ect_A Ring finger protein 126 99.1 7.7E-11 2.6E-15 90.5 3.6 48 321-368 14-64 (78)
27 2ysj_A Tripartite motif-contai 99.0 1.4E-10 4.8E-15 85.8 4.7 44 319-362 17-63 (63)
28 2l0b_A E3 ubiquitin-protein li 99.0 7.9E-11 2.7E-15 94.1 3.5 48 321-368 39-89 (91)
29 2ckl_A Polycomb group ring fin 99.0 8.8E-11 3E-15 95.9 3.8 48 321-368 14-62 (108)
30 2egp_A Tripartite motif-contai 99.0 2.7E-11 9.2E-16 92.7 0.6 48 320-367 10-64 (79)
31 4ic3_A E3 ubiquitin-protein li 99.0 3.8E-11 1.3E-15 92.8 1.1 48 322-373 24-72 (74)
32 2y43_A E3 ubiquitin-protein li 99.0 1E-10 3.4E-15 94.0 3.5 48 321-368 21-69 (99)
33 1x4j_A Ring finger protein 38; 99.0 9.5E-11 3.3E-15 89.7 3.0 48 321-368 22-72 (75)
34 2kre_A Ubiquitin conjugation f 99.0 1.7E-10 5.8E-15 94.8 4.5 49 319-367 26-74 (100)
35 1iym_A EL5; ring-H2 finger, ub 99.0 1.3E-10 4.5E-15 83.5 3.2 46 321-366 4-53 (55)
36 1wgm_A Ubiquitin conjugation f 99.0 2.1E-10 7.1E-15 93.9 4.8 49 319-367 19-68 (98)
37 2ckl_B Ubiquitin ligase protei 99.0 2.1E-10 7.3E-15 100.1 3.5 47 321-367 53-101 (165)
38 1z6u_A NP95-like ring finger p 99.0 2.4E-10 8.3E-15 99.8 3.8 48 321-368 77-125 (150)
39 2ecg_A Baculoviral IAP repeat- 99.0 1.2E-10 4.2E-15 89.8 1.6 48 322-373 25-73 (75)
40 2ecj_A Tripartite motif-contai 99.0 3.4E-10 1.2E-14 81.7 3.8 43 320-362 13-58 (58)
41 3l11_A E3 ubiquitin-protein li 99.0 7.7E-11 2.6E-15 97.1 0.3 48 321-368 14-62 (115)
42 1jm7_A BRCA1, breast cancer ty 98.9 2.3E-10 8E-15 92.9 2.8 46 322-367 21-69 (112)
43 1v87_A Deltex protein 2; ring- 98.9 3.1E-10 1.1E-14 93.0 3.4 48 322-369 25-95 (114)
44 4ap4_A E3 ubiquitin ligase RNF 98.9 3.3E-10 1.1E-14 93.5 3.1 49 320-368 5-60 (133)
45 3hct_A TNF receptor-associated 98.9 4E-10 1.4E-14 93.7 3.4 50 319-368 15-65 (118)
46 1g25_A CDK-activating kinase a 98.9 3.7E-10 1.3E-14 84.1 2.8 46 322-367 3-54 (65)
47 2c2l_A CHIP, carboxy terminus 98.9 5E-10 1.7E-14 102.9 4.2 50 318-367 204-254 (281)
48 2ea5_A Cell growth regulator w 98.9 4.7E-10 1.6E-14 86.1 3.1 49 321-373 14-63 (68)
49 1rmd_A RAG1; V(D)J recombinati 98.9 8.3E-10 2.8E-14 91.0 3.4 47 322-368 23-70 (116)
50 3knv_A TNF receptor-associated 98.9 6.7E-10 2.3E-14 96.2 2.6 47 320-366 29-76 (141)
51 2yu4_A E3 SUMO-protein ligase 98.8 1.5E-09 5.2E-14 87.5 3.5 46 320-365 5-59 (94)
52 2yho_A E3 ubiquitin-protein li 98.8 5.8E-10 2E-14 87.7 0.9 47 323-373 19-66 (79)
53 2ecl_A Ring-box protein 2; RNF 98.8 1.8E-09 6E-14 84.7 3.5 46 322-367 15-75 (81)
54 1jm7_B BARD1, BRCA1-associated 98.8 6.6E-10 2.2E-14 92.2 0.5 45 321-367 21-66 (117)
55 4ap4_A E3 ubiquitin ligase RNF 98.8 1.6E-09 5.5E-14 89.3 2.6 54 320-373 70-132 (133)
56 1bor_A Transcription factor PM 98.8 8.7E-10 3E-14 80.8 0.4 44 321-367 5-48 (56)
57 2y1n_A E3 ubiquitin-protein li 98.8 3E-09 1E-13 106.6 4.3 50 322-371 332-382 (389)
58 1e4u_A Transcriptional repress 98.8 3.1E-09 1.1E-13 83.8 3.3 50 320-369 9-63 (78)
59 2f42_A STIP1 homology and U-bo 98.7 6.1E-09 2.1E-13 94.4 4.4 51 318-368 102-153 (179)
60 3hcs_A TNF receptor-associated 98.7 6.1E-09 2.1E-13 91.2 3.4 50 319-368 15-65 (170)
61 3dpl_R Ring-box protein 1; ubi 98.7 8.2E-09 2.8E-13 85.9 4.0 47 321-367 36-100 (106)
62 3t6p_A Baculoviral IAP repeat- 98.7 2.5E-09 8.5E-14 105.4 0.9 49 321-373 294-343 (345)
63 3htk_C E3 SUMO-protein ligase 98.5 4.2E-08 1.4E-12 94.0 3.5 49 319-367 178-231 (267)
64 4a0k_B E3 ubiquitin-protein li 98.4 3.2E-08 1.1E-12 84.1 0.2 47 321-367 47-111 (117)
65 2bay_A PRE-mRNA splicing facto 98.3 1.6E-07 5.3E-12 70.8 2.4 46 322-367 3-49 (61)
66 2d8s_A Cellular modulator of i 98.3 3.4E-07 1.2E-11 72.5 3.4 47 321-367 14-69 (80)
67 1wim_A KIAA0161 protein; ring 98.2 3.7E-07 1.2E-11 72.8 2.6 45 321-365 4-61 (94)
68 2ct0_A Non-SMC element 1 homol 98.0 4.1E-06 1.4E-10 65.9 4.2 48 321-368 14-64 (74)
69 3vk6_A E3 ubiquitin-protein li 97.5 5.6E-05 1.9E-09 63.0 3.3 47 323-369 2-50 (101)
70 3k1l_B Fancl; UBC, ring, RWD, 97.4 2.8E-05 9.7E-10 77.4 1.0 48 321-368 307-373 (381)
71 1vyx_A ORF K3, K3RING; zinc-bi 97.4 9.1E-05 3.1E-09 55.6 3.0 46 322-367 6-58 (60)
72 3nw0_A Non-structural maintena 95.7 0.0054 1.8E-07 57.4 3.4 46 322-367 180-228 (238)
73 2ko5_A Ring finger protein Z; 95.2 0.005 1.7E-07 50.9 1.0 53 318-372 24-77 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 93.7 0.025 8.5E-07 45.0 2.0 32 322-353 3-37 (101)
75 2cs3_A Protein C14ORF4, MY039 90.7 0.12 4E-06 41.9 2.4 38 319-356 12-53 (93)
76 3m62_A Ubiquitin conjugation f 87.5 0.36 1.2E-05 53.5 4.1 52 317-368 886-938 (968)
77 2fiy_A Protein FDHE homolog; F 61.8 0.81 2.8E-05 44.4 -2.2 46 320-365 180-231 (309)
78 3i2d_A E3 SUMO-protein ligase 60.8 6.1 0.00021 39.4 3.9 47 321-367 248-299 (371)
79 4fo9_A E3 SUMO-protein ligase 58.5 7.3 0.00025 38.7 3.9 47 321-367 214-265 (360)
80 1m3v_A FLIN4, fusion of the LI 51.0 8 0.00027 31.5 2.4 47 321-367 31-80 (122)
81 3jyw_F 60S ribosomal protein L 45.0 22 0.00076 32.4 4.6 6 327-332 148-153 (213)
82 2d8v_A Zinc finger FYVE domain 41.6 13 0.00044 28.8 2.1 32 322-354 8-40 (67)
83 1z60_A TFIIH basal transcripti 40.9 14 0.00049 27.6 2.2 40 323-362 16-58 (59)
84 2lri_C Autoimmune regulator; Z 40.8 12 0.00041 28.2 1.8 44 322-365 12-59 (66)
85 1weo_A Cellulose synthase, cat 38.2 35 0.0012 27.9 4.2 47 321-367 15-69 (93)
86 3mjh_B Early endosome antigen 36.6 4.7 0.00016 27.2 -1.0 14 322-335 5-18 (34)
87 1rut_X Flinc4, fusion protein 35.6 12 0.0004 32.8 1.1 47 321-367 31-80 (188)
88 3mpx_A FYVE, rhogef and PH dom 33.0 9.1 0.00031 37.1 0.0 30 323-352 376-409 (434)
89 1wil_A KIAA1045 protein; ring 32.5 34 0.0012 27.7 3.2 32 321-353 14-48 (89)
90 2xjy_A Rhombotin-2; oncoprotei 31.9 22 0.00075 28.7 2.2 47 321-367 28-77 (131)
91 2o35_A Hypothetical protein DU 30.6 17 0.00058 30.2 1.2 13 343-355 42-54 (105)
92 3fyb_A Protein of unknown func 30.3 17 0.00059 30.2 1.2 13 343-355 41-53 (104)
93 2l5u_A Chromodomain-helicase-D 29.5 22 0.00075 26.0 1.6 42 321-365 10-58 (61)
94 1wfk_A Zinc finger, FYVE domai 29.3 21 0.00072 28.2 1.6 31 321-351 8-42 (88)
95 1joc_A EEA1, early endosomal a 27.9 20 0.00069 30.0 1.3 29 323-351 70-102 (125)
96 2k16_A Transcription initiatio 27.9 17 0.00059 27.3 0.8 47 322-368 18-71 (75)
97 2jmo_A Parkin; IBR, E3 ligase, 27.0 5.4 0.00019 30.9 -2.3 20 339-360 55-74 (80)
98 1y02_A CARP2, FYVE-ring finger 26.7 6.3 0.00022 33.3 -2.1 41 323-363 20-64 (120)
99 2pv0_B DNA (cytosine-5)-methyl 25.8 44 0.0015 33.4 3.5 45 321-365 92-148 (386)
100 3zyq_A Hepatocyte growth facto 25.1 22 0.00075 32.4 1.1 30 322-351 164-197 (226)
101 2rgt_A Fusion of LIM/homeobox 24.7 52 0.0018 28.0 3.3 45 321-367 32-76 (169)
102 2yw8_A RUN and FYVE domain-con 24.6 29 0.001 26.7 1.6 29 323-351 20-52 (82)
103 1dvp_A HRS, hepatocyte growth 23.7 21 0.00072 32.1 0.7 30 322-351 161-194 (220)
104 1vfy_A Phosphatidylinositol-3- 23.1 29 0.00098 26.2 1.2 28 323-350 12-43 (73)
105 1x4u_A Zinc finger, FYVE domai 22.8 29 0.00098 26.9 1.2 29 323-351 15-47 (84)
106 1x62_A C-terminal LIM domain p 22.8 41 0.0014 24.9 2.0 38 322-367 15-52 (79)
107 1zbd_B Rabphilin-3A; G protein 22.7 25 0.00084 30.1 0.8 44 321-364 54-106 (134)
108 3t7l_A Zinc finger FYVE domain 22.6 30 0.001 27.3 1.3 30 323-352 21-54 (90)
109 1mm2_A MI2-beta; PHD, zinc fin 21.9 15 0.00052 26.9 -0.5 45 322-366 9-57 (61)
110 1wd2_A Ariadne-1 protein homol 21.8 9.3 0.00032 28.3 -1.7 33 323-355 7-47 (60)
111 2lbm_A Transcriptional regulat 21.7 66 0.0023 27.8 3.4 43 322-364 63-116 (142)
112 2zet_C Melanophilin; complex, 21.5 31 0.0011 30.1 1.3 43 321-364 67-116 (153)
113 1x64_A Alpha-actinin-2 associa 21.2 50 0.0017 25.0 2.3 38 322-367 25-62 (89)
114 1z2q_A LM5-1; membrane protein 20.9 41 0.0014 26.0 1.7 30 322-351 21-54 (84)
115 2xqn_T Testin, TESS; metal-bin 20.6 51 0.0017 26.4 2.3 45 321-367 29-74 (126)
116 2gmg_A Hypothetical protein PF 20.5 15 0.00051 30.6 -0.9 27 335-366 68-94 (105)
117 2yql_A PHD finger protein 21A; 20.0 11 0.00038 27.0 -1.6 44 321-364 8-55 (56)
No 1
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.21 E-value=4.6e-12 Score=95.17 Aligned_cols=54 Identities=28% Similarity=0.600 Sum_probs=46.7
Q ss_pred CCcccccccccccccc-------EEeccCCcchHhHHHHHHhcCCCCcccccchh--hhhccC
Q 017319 320 GIEHNCCVCMVRHKGA-------AFIPCGHTFCRLCSRELWVQRGNCPLCNGFIL--EILDIF 373 (373)
Q Consensus 320 ~~~l~CpICle~~~~p-------v~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~--evL~IF 373 (373)
.....|+||++.+..+ +.++|||.||..|+.+|+.....||+||..+. .+.++|
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 3567899999999877 88999999999999999999999999999887 444544
No 2
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1e-11 Score=96.45 Aligned_cols=48 Identities=23% Similarity=0.584 Sum_probs=44.5
Q ss_pred CccccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccccchhh
Q 017319 321 IEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
..+.|+||++.+..+++++|||.||..|+..|+.....||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred CCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCccccc
Confidence 457899999999999999999999999999999988899999998763
No 3
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=8.6e-12 Score=94.79 Aligned_cols=49 Identities=29% Similarity=0.621 Sum_probs=45.1
Q ss_pred CCccccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccccchhh
Q 017319 320 GIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
...+.|+||++.+.+++.++|||.||..|+..|+.....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 3567899999999999999999999999999999988899999998874
No 4
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.17 E-value=9.2e-12 Score=91.36 Aligned_cols=53 Identities=28% Similarity=0.620 Sum_probs=45.8
Q ss_pred Ccccccccccccccc-------EEeccCCcchHhHHHHHHhcCCCCcccccchh--hhhccC
Q 017319 321 IEHNCCVCMVRHKGA-------AFIPCGHTFCRLCSRELWVQRGNCPLCNGFIL--EILDIF 373 (373)
Q Consensus 321 ~~l~CpICle~~~~p-------v~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~--evL~IF 373 (373)
+.+.|+||++.+..+ +.++|||.||..|+.+|+.....||+||..+. .+.++|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 357899999999876 78899999999999999999899999999887 455554
No 5
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.16 E-value=9.8e-12 Score=106.22 Aligned_cols=46 Identities=28% Similarity=0.701 Sum_probs=43.2
Q ss_pred cccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccccchhh
Q 017319 323 HNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 323 l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
+.|+||++.+.+|+.++|||.||..|+..|+.....||+||..+..
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 6799999999999999999999999999999998999999998753
No 6
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.1e-11 Score=92.83 Aligned_cols=49 Identities=29% Similarity=0.555 Sum_probs=44.7
Q ss_pred CCccccccccccccccEEe-ccCCcchHhHHHHHHhcCCCCcccccchhh
Q 017319 320 GIEHNCCVCMVRHKGAAFI-PCGHTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv~L-PCGH~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
...+.|+||++.+.+++.+ +|||.||..|+..|+.....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 4568899999999999987 999999999999999988999999998864
No 7
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.8e-11 Score=91.12 Aligned_cols=49 Identities=29% Similarity=0.621 Sum_probs=43.9
Q ss_pred CCcccccccccccccc-------EEeccCCcchHhHHHHHHhcCCCCcccccchhh
Q 017319 320 GIEHNCCVCMVRHKGA-------AFIPCGHTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 320 ~~~l~CpICle~~~~p-------v~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
...+.|+||++.+..+ +.++|||.||..|+..|+.....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4567899999999876 889999999999999999998999999998753
No 8
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.14 E-value=2.2e-11 Score=93.51 Aligned_cols=48 Identities=17% Similarity=0.300 Sum_probs=44.0
Q ss_pred CCccccccccccccccEEeccCCcchHhHHHHHHhc-CCCCcccccchh
Q 017319 320 GIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQ-RGNCPLCNGFIL 367 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~-s~~CPlCRa~i~ 367 (373)
...+.|+||++.+.+|+.++|||.||..|+.+|+.. ...||+||..+.
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 456899999999999999999999999999999987 678999998875
No 9
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.13 E-value=3.3e-11 Score=92.55 Aligned_cols=49 Identities=29% Similarity=0.635 Sum_probs=43.7
Q ss_pred CCCccccccccccccccEEec-cCCcchHhHHHHHHhcC--CCCcccccchh
Q 017319 319 GGIEHNCCVCMVRHKGAAFIP-CGHTFCRLCSRELWVQR--GNCPLCNGFIL 367 (373)
Q Consensus 319 ~~~~l~CpICle~~~~pv~LP-CGH~FC~sCI~rwlr~s--~~CPlCRa~i~ 367 (373)
....+.|+||++.+.+++.++ |||.||..||..|+... ..||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 346689999999999999999 99999999999999865 68999999754
No 10
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.12 E-value=4e-11 Score=90.10 Aligned_cols=51 Identities=25% Similarity=0.648 Sum_probs=44.0
Q ss_pred Ccccccccccccc---ccEEeccCCcchHhHHHHHHhcCCCCcccccchhhhhc
Q 017319 321 IEHNCCVCMVRHK---GAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILEILD 371 (373)
Q Consensus 321 ~~l~CpICle~~~---~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~evL~ 371 (373)
....|+||++.+. .++.++|||.||..|+..|+.....||+||..+...+.
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 4567999999884 46778999999999999999999999999999876553
No 11
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.12 E-value=3.4e-11 Score=95.20 Aligned_cols=48 Identities=29% Similarity=0.636 Sum_probs=43.1
Q ss_pred CCCccccccccccccccEEec-cCCcchHhHHHHHHhcC--CCCcccccch
Q 017319 319 GGIEHNCCVCMVRHKGAAFIP-CGHTFCRLCSRELWVQR--GNCPLCNGFI 366 (373)
Q Consensus 319 ~~~~l~CpICle~~~~pv~LP-CGH~FC~sCI~rwlr~s--~~CPlCRa~i 366 (373)
....+.|+||++.+.+|+.++ |||.||..||..|+... ..||+||..+
T Consensus 10 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 346689999999999999999 99999999999999754 5899999986
No 12
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=4.7e-11 Score=90.27 Aligned_cols=50 Identities=28% Similarity=0.554 Sum_probs=43.8
Q ss_pred CCCccccccccccccccEEeccCCcchHhHHHHHHh---cCCCCcccccchhh
Q 017319 319 GGIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWV---QRGNCPLCNGFILE 368 (373)
Q Consensus 319 ~~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr---~s~~CPlCRa~i~e 368 (373)
....+.|+||++.+.+++.++|||.||..|+..|+. ....||+||..+..
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 345688999999999999999999999999999996 34689999998753
No 13
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=3.3e-11 Score=90.16 Aligned_cols=49 Identities=24% Similarity=0.556 Sum_probs=43.8
Q ss_pred CCccccccccccccccEEeccCCcchHhHHHHHHh-cCCCCcccccchhh
Q 017319 320 GIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWV-QRGNCPLCNGFILE 368 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr-~s~~CPlCRa~i~e 368 (373)
...+.|+||++.+.+++.++|||.||..|+.+|+. ....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 45689999999999999999999999999999994 45789999998864
No 14
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.11 E-value=2.5e-11 Score=90.76 Aligned_cols=52 Identities=25% Similarity=0.673 Sum_probs=45.5
Q ss_pred Ccccccccccccccc-EEeccCCcchHhHHHHHHhcCCCCcccccchhhhhcc
Q 017319 321 IEHNCCVCMVRHKGA-AFIPCGHTFCRLCSRELWVQRGNCPLCNGFILEILDI 372 (373)
Q Consensus 321 ~~l~CpICle~~~~p-v~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~evL~I 372 (373)
....|+||++.+.++ +.++|||.||..|+.+|+.....||+||..+..++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 56 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHT 56 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEECC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhhhhc
Confidence 346799999999885 7789999999999999999889999999998876543
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=2.7e-11 Score=91.30 Aligned_cols=53 Identities=28% Similarity=0.729 Sum_probs=46.4
Q ss_pred CCccccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccccchhhhhccC
Q 017319 320 GIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILEILDIF 373 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~evL~IF 373 (373)
.....|+||++.+.. +.++|||.||..|+.+|+.....||+||..+.....+|
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 356789999999988 89999999999999999998889999999988655443
No 16
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.08 E-value=6e-11 Score=91.19 Aligned_cols=48 Identities=31% Similarity=0.693 Sum_probs=43.8
Q ss_pred CCccccccccccccccEEeccCCcchHhHHHHHHhc------CCCCcccccchh
Q 017319 320 GIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQ------RGNCPLCNGFIL 367 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~------s~~CPlCRa~i~ 367 (373)
...+.|+||++.+..++.++|||.||..|+..|+.. ...||+||..+.
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred ccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 456889999999999999999999999999999987 568999998876
No 17
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.08 E-value=7.6e-11 Score=93.75 Aligned_cols=50 Identities=12% Similarity=0.047 Sum_probs=45.8
Q ss_pred CCCccccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccccchhh
Q 017319 319 GGIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 319 ~~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
....+.|+||++.+.+|+.++|||+||..||.+|+....+||+|+..+..
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 34679999999999999999999999999999999988899999988763
No 18
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.08 E-value=4.6e-11 Score=99.86 Aligned_cols=48 Identities=19% Similarity=0.407 Sum_probs=43.2
Q ss_pred CccccccccccccccEEeccCCcchHhHHHHHHhcCC-CCcccccchhh
Q 017319 321 IEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRG-NCPLCNGFILE 368 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~-~CPlCRa~i~e 368 (373)
..+.|+||++.+.+|+.++|||.||..|+..|+.... .||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4478999999999999999999999999999998554 89999998865
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=7.1e-11 Score=91.91 Aligned_cols=48 Identities=29% Similarity=0.733 Sum_probs=43.0
Q ss_pred CCccccccccccccc----cEEeccCCcchHhHHHHHHhcC---CCCcccccchh
Q 017319 320 GIEHNCCVCMVRHKG----AAFIPCGHTFCRLCSRELWVQR---GNCPLCNGFIL 367 (373)
Q Consensus 320 ~~~l~CpICle~~~~----pv~LPCGH~FC~sCI~rwlr~s---~~CPlCRa~i~ 367 (373)
...+.|+||++.+.. ++.++|||.||..|+..|+... ..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 456889999999988 9999999999999999999876 78999998764
No 20
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.07 E-value=4.3e-11 Score=97.16 Aligned_cols=47 Identities=23% Similarity=0.627 Sum_probs=43.2
Q ss_pred CccccccccccccccEE-eccCCcchHhHHHHHHhcC-CCCcccccchh
Q 017319 321 IEHNCCVCMVRHKGAAF-IPCGHTFCRLCSRELWVQR-GNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~-LPCGH~FC~sCI~rwlr~s-~~CPlCRa~i~ 367 (373)
..+.|+||++.+..|+. ++|||.||..||..|+... ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 45789999999999999 8999999999999999987 68999998875
No 21
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.07 E-value=7e-11 Score=84.71 Aligned_cols=47 Identities=32% Similarity=0.718 Sum_probs=41.7
Q ss_pred Cccccccccccccc----cEEeccCCcchHhHHHHHHhcCCCCcccccchh
Q 017319 321 IEHNCCVCMVRHKG----AAFIPCGHTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~~----pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
....|+||++.+.. ++.++|||.||..|+.+|+.....||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 34679999999865 778899999999999999999899999998864
No 22
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.07 E-value=3.4e-11 Score=91.07 Aligned_cols=53 Identities=26% Similarity=0.596 Sum_probs=48.6
Q ss_pred CccccccccccccccEEe--ccCCc-chHhHHHHHHhcCCCCcccccchhhhhccC
Q 017319 321 IEHNCCVCMVRHKGAAFI--PCGHT-FCRLCSRELWVQRGNCPLCNGFILEILDIF 373 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~L--PCGH~-FC~sCI~rwlr~s~~CPlCRa~i~evL~IF 373 (373)
....|.||++...+++++ ||||. ||..|+..|+.....||+||..+..++++|
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 62 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeee
Confidence 345799999999999988 99999 899999999988889999999999999887
No 23
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.06 E-value=3e-11 Score=91.05 Aligned_cols=52 Identities=29% Similarity=0.678 Sum_probs=47.9
Q ss_pred ccccccccccccccEEe--ccCCc-chHhHHHHHHhcCCCCcccccchhhhhccC
Q 017319 322 EHNCCVCMVRHKGAAFI--PCGHT-FCRLCSRELWVQRGNCPLCNGFILEILDIF 373 (373)
Q Consensus 322 ~l~CpICle~~~~pv~L--PCGH~-FC~sCI~rwlr~s~~CPlCRa~i~evL~IF 373 (373)
...|.||++...+++++ ||||. ||..|+..|......||+||..+..++++|
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 61 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEE
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEe
Confidence 45799999999998888 99998 999999999988889999999999999987
No 24
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=7e-11 Score=89.87 Aligned_cols=52 Identities=33% Similarity=0.705 Sum_probs=44.1
Q ss_pred CCcccccccccccccc---EEeccCCcchHhHHHHHHhcCCCCcccccchhhhhc
Q 017319 320 GIEHNCCVCMVRHKGA---AFIPCGHTFCRLCSRELWVQRGNCPLCNGFILEILD 371 (373)
Q Consensus 320 ~~~l~CpICle~~~~p---v~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~evL~ 371 (373)
.....|+||++.+..+ ..++|+|.||..|+.+|+.....||+||..+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 3457899999998654 445999999999999999998999999999887654
No 25
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=7.1e-11 Score=90.77 Aligned_cols=48 Identities=25% Similarity=0.625 Sum_probs=43.9
Q ss_pred CCccccccccccccccEEeccCCcchHhHHHHHHhc------CCCCcccccchh
Q 017319 320 GIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQ------RGNCPLCNGFIL 367 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~------s~~CPlCRa~i~ 367 (373)
...+.|+||++.+.+++.++|||.||..|+..|+.. ...||+||..+.
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 456889999999999999999999999999999987 678999998876
No 26
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.05 E-value=7.7e-11 Score=90.52 Aligned_cols=48 Identities=25% Similarity=0.517 Sum_probs=41.8
Q ss_pred Ccccccccccccccc---EEeccCCcchHhHHHHHHhcCCCCcccccchhh
Q 017319 321 IEHNCCVCMVRHKGA---AFIPCGHTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 321 ~~l~CpICle~~~~p---v~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
....|+||++.+..+ +.++|||.||..|+.+|+.....||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 457899999988644 567999999999999999988999999998864
No 27
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.4e-10 Score=85.79 Aligned_cols=44 Identities=32% Similarity=0.645 Sum_probs=39.3
Q ss_pred CCCccccccccccccccEEeccCCcchHhHHHHHHhc---CCCCccc
Q 017319 319 GGIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQ---RGNCPLC 362 (373)
Q Consensus 319 ~~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~---s~~CPlC 362 (373)
....+.|+||++.+.+++.++|||.||..|+.+|+.. ...||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456889999999999999999999999999999983 4689998
No 28
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.04 E-value=7.9e-11 Score=94.06 Aligned_cols=48 Identities=27% Similarity=0.615 Sum_probs=42.8
Q ss_pred Cccccccccccccc---cEEeccCCcchHhHHHHHHhcCCCCcccccchhh
Q 017319 321 IEHNCCVCMVRHKG---AAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 321 ~~l~CpICle~~~~---pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
....|+||++.+.. ++.++|||.||..|+..|+.....||+||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 45789999998876 7788999999999999999998999999998764
No 29
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.04 E-value=8.8e-11 Score=95.92 Aligned_cols=48 Identities=25% Similarity=0.567 Sum_probs=44.3
Q ss_pred CccccccccccccccEEe-ccCCcchHhHHHHHHhcCCCCcccccchhh
Q 017319 321 IEHNCCVCMVRHKGAAFI-PCGHTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~L-PCGH~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
..+.|+||++.+.+++.+ +|||.||..|+..|+.....||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 457899999999999998 999999999999999988999999998764
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.04 E-value=2.7e-11 Score=92.73 Aligned_cols=48 Identities=25% Similarity=0.605 Sum_probs=43.3
Q ss_pred CCccccccccccccccEEeccCCcchHhHHHHHHhc-------CCCCcccccchh
Q 017319 320 GIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQ-------RGNCPLCNGFIL 367 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~-------s~~CPlCRa~i~ 367 (373)
...+.|+||++.+.+++.++|||.||..|+..|+.. ...||+||..+.
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 456889999999999999999999999999999986 568999998875
No 31
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.03 E-value=3.8e-11 Score=92.81 Aligned_cols=48 Identities=35% Similarity=0.893 Sum_probs=44.9
Q ss_pred ccccccccccccccEEeccCCc-chHhHHHHHHhcCCCCcccccchhhhhccC
Q 017319 322 EHNCCVCMVRHKGAAFIPCGHT-FCRLCSRELWVQRGNCPLCNGFILEILDIF 373 (373)
Q Consensus 322 ~l~CpICle~~~~pv~LPCGH~-FC~sCI~rwlr~s~~CPlCRa~i~evL~IF 373 (373)
...|+||++.+.+++++||||. ||..|+..| ..||+||..+..++++|
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKIL 72 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEEEECB
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCcEEEe
Confidence 3679999999999999999999 999999988 78999999999999887
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.03 E-value=1e-10 Score=94.04 Aligned_cols=48 Identities=29% Similarity=0.689 Sum_probs=43.7
Q ss_pred CccccccccccccccEEe-ccCCcchHhHHHHHHhcCCCCcccccchhh
Q 017319 321 IEHNCCVCMVRHKGAAFI-PCGHTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~L-PCGH~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
..+.|+||++.+.+++.+ +|||.||..|+..|+.....||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 347899999999999988 899999999999999988899999988763
No 33
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=9.5e-11 Score=89.69 Aligned_cols=48 Identities=25% Similarity=0.616 Sum_probs=42.3
Q ss_pred Ccccccccccccccc---EEeccCCcchHhHHHHHHhcCCCCcccccchhh
Q 017319 321 IEHNCCVCMVRHKGA---AFIPCGHTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 321 ~~l~CpICle~~~~p---v~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
....|+||++.+..+ +.++|+|.||..|+.+|+.....||+||..+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 446799999998765 778999999999999999999999999998754
No 34
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.01 E-value=1.7e-10 Score=94.78 Aligned_cols=49 Identities=10% Similarity=-0.006 Sum_probs=45.5
Q ss_pred CCCccccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccccchh
Q 017319 319 GGIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 319 ~~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
....+.|+||++.+.+|+.++|||+||..||..|+....+||+|+..+.
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred CcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 4567999999999999999999999999999999998889999998876
No 35
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.01 E-value=1.3e-10 Score=83.45 Aligned_cols=46 Identities=33% Similarity=0.761 Sum_probs=40.9
Q ss_pred Cccccccccccccc---cEEec-cCCcchHhHHHHHHhcCCCCcccccch
Q 017319 321 IEHNCCVCMVRHKG---AAFIP-CGHTFCRLCSRELWVQRGNCPLCNGFI 366 (373)
Q Consensus 321 ~~l~CpICle~~~~---pv~LP-CGH~FC~sCI~rwlr~s~~CPlCRa~i 366 (373)
....|+||++.+.. ++.++ |||.||..|+.+|+.....||+||..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 34679999999876 67787 999999999999999989999999876
No 36
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.01 E-value=2.1e-10 Score=93.94 Aligned_cols=49 Identities=10% Similarity=-0.038 Sum_probs=45.5
Q ss_pred CCCccccccccccccccEEeccC-CcchHhHHHHHHhcCCCCcccccchh
Q 017319 319 GGIEHNCCVCMVRHKGAAFIPCG-HTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 319 ~~~~l~CpICle~~~~pv~LPCG-H~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
....+.|+||++.+.+|+.++|| |+||..||.+|+.....||+|+..+.
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 45679999999999999999999 99999999999998889999998876
No 37
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.97 E-value=2.1e-10 Score=100.14 Aligned_cols=47 Identities=26% Similarity=0.550 Sum_probs=42.8
Q ss_pred CccccccccccccccEEe-ccCCcchHhHHHHHHhc-CCCCcccccchh
Q 017319 321 IEHNCCVCMVRHKGAAFI-PCGHTFCRLCSRELWVQ-RGNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~L-PCGH~FC~sCI~rwlr~-s~~CPlCRa~i~ 367 (373)
..+.|+||++.+.+++.+ +|||.||..|+..|+.. ...||+||..+.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 457899999999999988 99999999999999997 678999999874
No 38
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.96 E-value=2.4e-10 Score=99.77 Aligned_cols=48 Identities=19% Similarity=0.438 Sum_probs=43.4
Q ss_pred CccccccccccccccEEeccCCcchHhHHHHHHhcCC-CCcccccchhh
Q 017319 321 IEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRG-NCPLCNGFILE 368 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~-~CPlCRa~i~e 368 (373)
..+.|+||++.+.+|+.++|||.||..||..|+.... .||+||..+..
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 3478999999999999999999999999999998764 79999998874
No 39
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=1.2e-10 Score=89.84 Aligned_cols=48 Identities=38% Similarity=0.928 Sum_probs=43.8
Q ss_pred ccccccccccccccEEeccCCc-chHhHHHHHHhcCCCCcccccchhhhhccC
Q 017319 322 EHNCCVCMVRHKGAAFIPCGHT-FCRLCSRELWVQRGNCPLCNGFILEILDIF 373 (373)
Q Consensus 322 ~l~CpICle~~~~pv~LPCGH~-FC~sCI~rwlr~s~~CPlCRa~i~evL~IF 373 (373)
...|+||++.+.+++++||||. ||..|+..+ ..||+||..+...+++|
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKIF 73 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCCCBCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceecCcEEEe
Confidence 3679999999999999999999 999999653 78999999999999987
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=3.4e-10 Score=81.72 Aligned_cols=43 Identities=37% Similarity=1.010 Sum_probs=38.1
Q ss_pred CCccccccccccccccEEeccCCcchHhHHHHHHh---cCCCCccc
Q 017319 320 GIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWV---QRGNCPLC 362 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr---~s~~CPlC 362 (373)
...+.|+||++.+.+++.++|||.||..|+..|+. ....||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 35678999999999999999999999999999954 45689998
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.96 E-value=7.7e-11 Score=97.09 Aligned_cols=48 Identities=27% Similarity=0.649 Sum_probs=43.2
Q ss_pred CccccccccccccccEEeccCCcchHhHHHHHHhc-CCCCcccccchhh
Q 017319 321 IEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQ-RGNCPLCNGFILE 368 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~-s~~CPlCRa~i~e 368 (373)
.++.|+||++.+.+|+.++|||.||..|+..|+.. ...||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 45889999999999999999999999999999876 4689999998764
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=2.3e-10 Score=92.91 Aligned_cols=46 Identities=33% Similarity=0.764 Sum_probs=41.7
Q ss_pred ccccccccccccccEEeccCCcchHhHHHHHHhcC---CCCcccccchh
Q 017319 322 EHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQR---GNCPLCNGFIL 367 (373)
Q Consensus 322 ~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s---~~CPlCRa~i~ 367 (373)
.+.|+||++.+..++.++|||.||..|+..|+... ..||+||..+.
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 36799999999999999999999999999999865 38999998876
No 43
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.94 E-value=3.1e-10 Score=93.00 Aligned_cols=48 Identities=29% Similarity=0.665 Sum_probs=39.5
Q ss_pred ccccccccccccccE------------------EeccCCcchHhHHHHHHh-----cCCCCcccccchhhh
Q 017319 322 EHNCCVCMVRHKGAA------------------FIPCGHTFCRLCSRELWV-----QRGNCPLCNGFILEI 369 (373)
Q Consensus 322 ~l~CpICle~~~~pv------------------~LPCGH~FC~sCI~rwlr-----~s~~CPlCRa~i~ev 369 (373)
+..|+||++.+..+. .++|+|.||..||..|+. ....||+||..+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 357999999986543 679999999999999994 456899999887643
No 44
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.93 E-value=3.3e-10 Score=93.45 Aligned_cols=49 Identities=29% Similarity=0.621 Sum_probs=44.5
Q ss_pred CCcccccccccccccc-------EEeccCCcchHhHHHHHHhcCCCCcccccchhh
Q 017319 320 GIEHNCCVCMVRHKGA-------AFIPCGHTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 320 ~~~l~CpICle~~~~p-------v~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
...+.|+||++.+..+ +.++|||.||..|+.+|+.....||+||..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 3568899999999888 899999999999999999999999999998863
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.92 E-value=4e-10 Score=93.68 Aligned_cols=50 Identities=32% Similarity=0.753 Sum_probs=44.8
Q ss_pred CCCccccccccccccccEEeccCCcchHhHHHHHHhcCC-CCcccccchhh
Q 017319 319 GGIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRG-NCPLCNGFILE 368 (373)
Q Consensus 319 ~~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~-~CPlCRa~i~e 368 (373)
....+.|+||++.+..++.++|||.||..|+..|+.... .||+||..+..
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 345689999999999999999999999999999998765 89999988764
No 46
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=3.7e-10 Score=84.14 Aligned_cols=46 Identities=33% Similarity=0.805 Sum_probs=39.2
Q ss_pred ccccccccc-ccccc----EEeccCCcchHhHHHHHHhcC-CCCcccccchh
Q 017319 322 EHNCCVCMV-RHKGA----AFIPCGHTFCRLCSRELWVQR-GNCPLCNGFIL 367 (373)
Q Consensus 322 ~l~CpICle-~~~~p----v~LPCGH~FC~sCI~rwlr~s-~~CPlCRa~i~ 367 (373)
++.|+||++ .+.++ +.++|||.||..|+.+|+... ..||+||..+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 467999999 78777 467999999999999996644 67999999876
No 47
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.92 E-value=5e-10 Score=102.93 Aligned_cols=50 Identities=12% Similarity=-0.027 Sum_probs=44.6
Q ss_pred cCCCccccccccccccccEEeccCCcchHhHHHHHHhcC-CCCcccccchh
Q 017319 318 AGGIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQR-GNCPLCNGFIL 367 (373)
Q Consensus 318 ~~~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s-~~CPlCRa~i~ 367 (373)
.....+.|+||++.+.+|++++|||+||..||..|+... ..||+|+.++.
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 345779999999999999999999999999999999864 45999999876
No 48
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=4.7e-10 Score=86.05 Aligned_cols=49 Identities=29% Similarity=0.778 Sum_probs=44.6
Q ss_pred CccccccccccccccEEeccCCc-chHhHHHHHHhcCCCCcccccchhhhhccC
Q 017319 321 IEHNCCVCMVRHKGAAFIPCGHT-FCRLCSRELWVQRGNCPLCNGFILEILDIF 373 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LPCGH~-FC~sCI~rwlr~s~~CPlCRa~i~evL~IF 373 (373)
....|.||++...+++++||||. ||..|+... ..||+||..+..++++|
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~i~ 63 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF----QQCPMCRQFVQESFALS 63 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC----SSCTTTCCCCCCEECCC
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC----CCCCCCCcchhceEEee
Confidence 45779999999999999999999 999999853 78999999999999987
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.87 E-value=8.3e-10 Score=91.03 Aligned_cols=47 Identities=23% Similarity=0.521 Sum_probs=43.0
Q ss_pred ccccccccccccccEEeccCCcchHhHHHHHHhc-CCCCcccccchhh
Q 017319 322 EHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQ-RGNCPLCNGFILE 368 (373)
Q Consensus 322 ~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~-s~~CPlCRa~i~e 368 (373)
.+.|+||++.+.+|+.++|||.||..|+..|+.. ...||+||..+..
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 4789999999999999999999999999999987 5789999998763
No 50
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.86 E-value=6.7e-10 Score=96.17 Aligned_cols=47 Identities=21% Similarity=0.496 Sum_probs=42.6
Q ss_pred CCccccccccccccccEEeccCCcchHhHHHHHHhcCC-CCcccccch
Q 017319 320 GIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRG-NCPLCNGFI 366 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~-~CPlCRa~i 366 (373)
...+.|+||++.+..|+.++|||.||..||..|+.... .||+||..+
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 45689999999999999999999999999999998664 899999864
No 51
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=1.5e-09 Score=87.46 Aligned_cols=46 Identities=22% Similarity=0.381 Sum_probs=40.7
Q ss_pred CCccccccccccccccEEec-cCCcchHhHHHHHHhcC------CCCcc--cccc
Q 017319 320 GIEHNCCVCMVRHKGAAFIP-CGHTFCRLCSRELWVQR------GNCPL--CNGF 365 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv~LP-CGH~FC~sCI~rwlr~s------~~CPl--CRa~ 365 (373)
...+.|+||++.+.+|+.++ |||+||..||..|+... ..||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 46689999999999999996 99999999999999763 48999 9844
No 52
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.82 E-value=5.8e-10 Score=87.74 Aligned_cols=47 Identities=32% Similarity=0.897 Sum_probs=43.4
Q ss_pred cccccccccccccEEeccCCc-chHhHHHHHHhcCCCCcccccchhhhhccC
Q 017319 323 HNCCVCMVRHKGAAFIPCGHT-FCRLCSRELWVQRGNCPLCNGFILEILDIF 373 (373)
Q Consensus 323 l~CpICle~~~~pv~LPCGH~-FC~sCI~rwlr~s~~CPlCRa~i~evL~IF 373 (373)
..|.||++.+.+++++||||. ||..|+..| ..||+||..+..++++|
T Consensus 19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHVQHVY 66 (79)
T ss_dssp TBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEEEECB
T ss_pred CEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCeEEEE
Confidence 579999999999999999999 999999876 58999999999988876
No 53
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.8e-09 Score=84.73 Aligned_cols=46 Identities=26% Similarity=0.586 Sum_probs=38.5
Q ss_pred ccccccccccccc--------------cEEec-cCCcchHhHHHHHHhcCCCCcccccchh
Q 017319 322 EHNCCVCMVRHKG--------------AAFIP-CGHTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 322 ~l~CpICle~~~~--------------pv~LP-CGH~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
...|+||++.+.. .+.++ |+|.||..||.+|+....+||+||..+.
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 3558888888854 44554 9999999999999999999999999875
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.80 E-value=6.6e-10 Score=92.22 Aligned_cols=45 Identities=22% Similarity=0.533 Sum_probs=41.1
Q ss_pred CccccccccccccccEEe-ccCCcchHhHHHHHHhcCCCCcccccchh
Q 017319 321 IEHNCCVCMVRHKGAAFI-PCGHTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~L-PCGH~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
..+.|+||++.+.+|+.+ +|||.||..|+..|+. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 457899999999999999 9999999999999987 78999998874
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.79 E-value=1.6e-09 Score=89.30 Aligned_cols=54 Identities=28% Similarity=0.600 Sum_probs=46.0
Q ss_pred CCcccccccccccccc-------EEeccCCcchHhHHHHHHhcCCCCcccccchh--hhhccC
Q 017319 320 GIEHNCCVCMVRHKGA-------AFIPCGHTFCRLCSRELWVQRGNCPLCNGFIL--EILDIF 373 (373)
Q Consensus 320 ~~~l~CpICle~~~~p-------v~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~--evL~IF 373 (373)
.....|+||++.+..+ +.++|||.||..|+.+|+...+.||+||..+. .+.++|
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 3557899999998775 88899999999999999999999999999876 444544
No 56
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.77 E-value=8.7e-10 Score=80.84 Aligned_cols=44 Identities=27% Similarity=0.616 Sum_probs=38.8
Q ss_pred CccccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccccchh
Q 017319 321 IEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
..+.|+||++.+.+++.++|||.||..|+.. ....||+||..+.
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSS
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHcc---CCCCCCcCCcEee
Confidence 4578999999999999999999999999977 3468999998875
No 57
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.77 E-value=3e-09 Score=106.58 Aligned_cols=50 Identities=26% Similarity=0.577 Sum_probs=44.7
Q ss_pred ccccccccccccccEEeccCCcchHhHHHHHHh-cCCCCcccccchhhhhc
Q 017319 322 EHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWV-QRGNCPLCNGFILEILD 371 (373)
Q Consensus 322 ~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr-~s~~CPlCRa~i~evL~ 371 (373)
...|+||++.+..++.++|||.||..|+..|+. ....||+||..+.....
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 367999999999999999999999999999998 56789999999876543
No 58
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.76 E-value=3.1e-09 Score=83.76 Aligned_cols=50 Identities=30% Similarity=0.685 Sum_probs=40.1
Q ss_pred CCcccccccccccc--ccEEec--cCCcchHhHHHHHHhc-CCCCcccccchhhh
Q 017319 320 GIEHNCCVCMVRHK--GAAFIP--CGHTFCRLCSRELWVQ-RGNCPLCNGFILEI 369 (373)
Q Consensus 320 ~~~l~CpICle~~~--~pv~LP--CGH~FC~sCI~rwlr~-s~~CPlCRa~i~ev 369 (373)
.+++.|+||++.+. ++.++| |||.||..|+..++.. ...||+||..+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 35578999999884 456666 9999999999998753 46899999988753
No 59
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.72 E-value=6.1e-09 Score=94.41 Aligned_cols=51 Identities=12% Similarity=-0.022 Sum_probs=45.1
Q ss_pred cCCCccccccccccccccEEeccCCcchHhHHHHHHhcC-CCCcccccchhh
Q 017319 318 AGGIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQR-GNCPLCNGFILE 368 (373)
Q Consensus 318 ~~~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s-~~CPlCRa~i~e 368 (373)
.....+.|+||++.+.+|++++|||+||..||..|+... ..||+|+.++..
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 345779999999999999999999999999999999864 469999988763
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.70 E-value=6.1e-09 Score=91.17 Aligned_cols=50 Identities=32% Similarity=0.753 Sum_probs=44.4
Q ss_pred CCCccccccccccccccEEeccCCcchHhHHHHHHhcCC-CCcccccchhh
Q 017319 319 GGIEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRG-NCPLCNGFILE 368 (373)
Q Consensus 319 ~~~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~-~CPlCRa~i~e 368 (373)
....+.|+||++.+.+|+.++|||.||..|+.+|+.... .||+||..+..
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 346689999999999999999999999999999997654 89999988764
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.69 E-value=8.2e-09 Score=85.89 Aligned_cols=47 Identities=28% Similarity=0.464 Sum_probs=40.1
Q ss_pred Ccccccccccccccc------------------EEeccCCcchHhHHHHHHhcCCCCcccccchh
Q 017319 321 IEHNCCVCMVRHKGA------------------AFIPCGHTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~~p------------------v~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
....|.||++.+..+ +.++|+|.||..||..|+....+||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 446799999988643 45789999999999999999999999999853
No 62
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.69 E-value=2.5e-09 Score=105.40 Aligned_cols=49 Identities=41% Similarity=0.993 Sum_probs=45.7
Q ss_pred CccccccccccccccEEeccCCc-chHhHHHHHHhcCCCCcccccchhhhhccC
Q 017319 321 IEHNCCVCMVRHKGAAFIPCGHT-FCRLCSRELWVQRGNCPLCNGFILEILDIF 373 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LPCGH~-FC~sCI~rwlr~s~~CPlCRa~i~evL~IF 373 (373)
....|+||++.+.+++++||||. ||..|+..| ..||+||..+..++++|
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~~~i~ 343 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGTVRTF 343 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEEEECC
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCeEEee
Confidence 45789999999999999999999 999999987 78999999999999987
No 63
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.50 E-value=4.2e-08 Score=93.99 Aligned_cols=49 Identities=22% Similarity=0.434 Sum_probs=42.8
Q ss_pred CCCccccccccccccccEEe-ccCCcchHhHHHHHHhcC--CCCcc--cccchh
Q 017319 319 GGIEHNCCVCMVRHKGAAFI-PCGHTFCRLCSRELWVQR--GNCPL--CNGFIL 367 (373)
Q Consensus 319 ~~~~l~CpICle~~~~pv~L-PCGH~FC~sCI~rwlr~s--~~CPl--CRa~i~ 367 (373)
....+.|+||+..+.+|+.. .|||.||..||..|+... ..||+ |+..+.
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 34678999999999999986 899999999999999764 46999 998764
No 64
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.42 E-value=3.2e-08 Score=84.10 Aligned_cols=47 Identities=28% Similarity=0.464 Sum_probs=0.8
Q ss_pred Ccccccccccccccc------------------EEeccCCcchHhHHHHHHhcCCCCcccccchh
Q 017319 321 IEHNCCVCMVRHKGA------------------AFIPCGHTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~~p------------------v~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
....|.||++.+..+ +.++|+|.||..||.+|+.....||+||..+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 346799999988642 22489999999999999999999999999853
No 65
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.34 E-value=1.6e-07 Score=70.84 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=42.4
Q ss_pred ccccccccccccccEEe-ccCCcchHhHHHHHHhcCCCCcccccchh
Q 017319 322 EHNCCVCMVRHKGAAFI-PCGHTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 322 ~l~CpICle~~~~pv~L-PCGH~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
.+.|+||++.+.+|+.+ +|||+||..||.+|+....+||+++.++.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 47899999999999999 89999999999999988788999998875
No 66
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=3.4e-07 Score=72.53 Aligned_cols=47 Identities=19% Similarity=0.489 Sum_probs=39.2
Q ss_pred Ccccccccccccc--ccEEeccC-----CcchHhHHHHHHhcC--CCCcccccchh
Q 017319 321 IEHNCCVCMVRHK--GAAFIPCG-----HTFCRLCSRELWVQR--GNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~--~pv~LPCG-----H~FC~sCI~rwlr~s--~~CPlCRa~i~ 367 (373)
....|.||++.+. .+.++||. |.||..||.+|+... ..||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 3457999998773 56778996 999999999999876 48999998875
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.24 E-value=3.7e-07 Score=72.85 Aligned_cols=45 Identities=22% Similarity=0.498 Sum_probs=37.1
Q ss_pred CccccccccccccccEEe---ccCCcchHhHHHHHHhcC--------CCCcc--cccc
Q 017319 321 IEHNCCVCMVRHKGAAFI---PCGHTFCRLCSRELWVQR--------GNCPL--CNGF 365 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~L---PCGH~FC~sCI~rwlr~s--------~~CPl--CRa~ 365 (373)
..+.|+||++.+..+.++ +|||.||..|+..++... ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 457899999998766544 699999999999998642 36999 9987
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.01 E-value=4.1e-06 Score=65.91 Aligned_cols=48 Identities=19% Similarity=0.447 Sum_probs=40.0
Q ss_pred CccccccccccccccEEe-ccCCcchHhHHHHHHhcC--CCCcccccchhh
Q 017319 321 IEHNCCVCMVRHKGAAFI-PCGHTFCRLCSRELWVQR--GNCPLCNGFILE 368 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~L-PCGH~FC~sCI~rwlr~s--~~CPlCRa~i~e 368 (373)
....|.||+..+.....- .|+|.|+..||.+|++.. .+||+||..+..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 446799999999754443 699999999999999887 789999987653
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.48 E-value=5.6e-05 Score=63.04 Aligned_cols=47 Identities=32% Similarity=0.603 Sum_probs=38.4
Q ss_pred cccccccccccc-cEEeccCCcchHhHHHHHHhc-CCCCcccccchhhh
Q 017319 323 HNCCVCMVRHKG-AAFIPCGHTFCRLCSRELWVQ-RGNCPLCNGFILEI 369 (373)
Q Consensus 323 l~CpICle~~~~-pv~LPCGH~FC~sCI~rwlr~-s~~CPlCRa~i~ev 369 (373)
..|.+|--.+.. ..++||.|.||..|+..|.++ .+.||.|+..+..+
T Consensus 2 hfC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp CBCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred eecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 358889877753 456799999999999999865 57899999988754
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.42 E-value=2.8e-05 Score=77.38 Aligned_cols=48 Identities=21% Similarity=0.515 Sum_probs=37.2
Q ss_pred Cccccccccccccc----c----EEeccCCcchHhHHHHHHhcC-----------CCCcccccchhh
Q 017319 321 IEHNCCVCMVRHKG----A----AFIPCGHTFCRLCSRELWVQR-----------GNCPLCNGFILE 368 (373)
Q Consensus 321 ~~l~CpICle~~~~----p----v~LPCGH~FC~sCI~rwlr~s-----------~~CPlCRa~i~e 368 (373)
....|+||+..+.. | ....|+|.|+..|+.+|++.. +.||+||.++..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 34569999988764 1 123699999999999999753 469999998764
No 71
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.37 E-value=9.1e-05 Score=55.57 Aligned_cols=46 Identities=20% Similarity=0.438 Sum_probs=36.7
Q ss_pred ccccccccccccccEEeccC--C---cchHhHHHHHHhc--CCCCcccccchh
Q 017319 322 EHNCCVCMVRHKGAAFIPCG--H---TFCRLCSRELWVQ--RGNCPLCNGFIL 367 (373)
Q Consensus 322 ~l~CpICle~~~~pv~LPCG--H---~FC~sCI~rwlr~--s~~CPlCRa~i~ 367 (373)
...|.||+.....+..+||. + .|+..|+.+|+.. ...||+|+..+.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 35699999876666678865 4 6999999999975 467999998764
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.73 E-value=0.0054 Score=57.40 Aligned_cols=46 Identities=20% Similarity=0.481 Sum_probs=38.0
Q ss_pred ccccccccccccccEEec-cCCcchHhHHHHHHhcCC--CCcccccchh
Q 017319 322 EHNCCVCMVRHKGAAFIP-CGHTFCRLCSRELWVQRG--NCPLCNGFIL 367 (373)
Q Consensus 322 ~l~CpICle~~~~pv~LP-CGH~FC~sCI~rwlr~s~--~CPlCRa~i~ 367 (373)
...|.||.......+.-+ |+|.|+..|+.+|++... .||.|+....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 567999999887655544 999999999999987654 8999987754
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.17 E-value=0.005 Score=50.93 Aligned_cols=53 Identities=23% Similarity=0.469 Sum_probs=42.7
Q ss_pred cCCCccccccccccccccEEeccC-CcchHhHHHHHHhcCCCCcccccchhhhhcc
Q 017319 318 AGGIEHNCCVCMVRHKGAAFIPCG-HTFCRLCSRELWVQRGNCPLCNGFILEILDI 372 (373)
Q Consensus 318 ~~~~~l~CpICle~~~~pv~LPCG-H~FC~sCI~rwlr~s~~CPlCRa~i~evL~I 372 (373)
.....+.|..|.-..+ -++.|. |.+|..|+..++..+.+||+|..++...|.+
T Consensus 24 s~~G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 24 THLGPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCSCCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred cccCcccChhhccccC--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 3446688999996665 466775 8899999999999999999999998876643
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.71 E-value=0.025 Score=44.95 Aligned_cols=32 Identities=19% Similarity=0.511 Sum_probs=26.4
Q ss_pred cccccccccc-ccccEE--eccCCcchHhHHHHHH
Q 017319 322 EHNCCVCMVR-HKGAAF--IPCGHTFCRLCSRELW 353 (373)
Q Consensus 322 ~l~CpICle~-~~~pv~--LPCGH~FC~sCI~rwl 353 (373)
+..|.||.+. +..++. +.|+|.||..|+..+.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 4789999975 566666 8999999999999843
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=90.74 E-value=0.12 Score=41.86 Aligned_cols=38 Identities=32% Similarity=0.676 Sum_probs=31.1
Q ss_pred CCCccccccccccccccEEecc----CCcchHhHHHHHHhcC
Q 017319 319 GGIEHNCCVCMVRHKGAAFIPC----GHTFCRLCSRELWVQR 356 (373)
Q Consensus 319 ~~~~l~CpICle~~~~pv~LPC----GH~FC~sCI~rwlr~s 356 (373)
....+.|.+|.+.+.+.-+..| .|.||+.|.....+..
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhc
Confidence 3466889999999998877777 5889999998887643
No 76
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=87.53 E-value=0.36 Score=53.48 Aligned_cols=52 Identities=10% Similarity=-0.035 Sum_probs=46.1
Q ss_pred ccCCCccccccccccccccEEeccC-CcchHhHHHHHHhcCCCCcccccchhh
Q 017319 317 NAGGIEHNCCVCMVRHKGAAFIPCG-HTFCRLCSRELWVQRGNCPLCNGFILE 368 (373)
Q Consensus 317 ~~~~~~l~CpICle~~~~pv~LPCG-H~FC~sCI~rwlr~s~~CPlCRa~i~e 368 (373)
......+.|+|-++...+|+.+|.| ++|-..+|.+|+....+||+-|.++..
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 3456789999999999999999998 589999999999988899999988763
No 77
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=61.82 E-value=0.81 Score=44.40 Aligned_cols=46 Identities=22% Similarity=0.362 Sum_probs=35.3
Q ss_pred CCccccccccccccccEEe----ccC--CcchHhHHHHHHhcCCCCcccccc
Q 017319 320 GIEHNCCVCMVRHKGAAFI----PCG--HTFCRLCSRELWVQRGNCPLCNGF 365 (373)
Q Consensus 320 ~~~l~CpICle~~~~pv~L----PCG--H~FC~sCI~rwlr~s~~CPlCRa~ 365 (373)
+....||||-....-.++. .=| +.+|..|-..|...+..||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4667899999887654443 234 346999999999999999999765
No 78
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=60.77 E-value=6.1 Score=39.41 Aligned_cols=47 Identities=23% Similarity=0.317 Sum_probs=33.2
Q ss_pred CccccccccccccccEEe-ccCCcchHhH--HHHHHhcC--CCCcccccchh
Q 017319 321 IEHNCCVCMVRHKGAAFI-PCGHTFCRLC--SRELWVQR--GNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~L-PCGH~FC~sC--I~rwlr~s--~~CPlCRa~i~ 367 (373)
..+.|++-+..+..|+.- .|.|.-|+.- +..+.... -.||+|...+.
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 558899999999888776 5999855543 33333333 46999987763
No 79
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=58.49 E-value=7.3 Score=38.74 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=33.3
Q ss_pred CccccccccccccccEEe-ccCCcchHhH--HHHHHhcC--CCCcccccchh
Q 017319 321 IEHNCCVCMVRHKGAAFI-PCGHTFCRLC--SRELWVQR--GNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~L-PCGH~FC~sC--I~rwlr~s--~~CPlCRa~i~ 367 (373)
..+.|+|-+..+..|+.- .|.|.-|+.- +..+.... -.||+|...+.
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 558899999999888776 5999855443 33333333 46999988764
No 80
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=51.00 E-value=8 Score=31.51 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=35.3
Q ss_pred Ccccccccccccc---ccEEeccCCcchHhHHHHHHhcCCCCcccccchh
Q 017319 321 IEHNCCVCMVRHK---GAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~---~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
.-+.|..|...+. ...+..=|..||..|..+.+.....|..|...|.
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 3478889988885 2344456777999999887665558999988876
No 81
>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F
Probab=44.97 E-value=22 Score=32.44 Aligned_cols=6 Identities=0% Similarity=-0.036 Sum_probs=2.6
Q ss_pred cccccc
Q 017319 327 VCMVRH 332 (373)
Q Consensus 327 ICle~~ 332 (373)
||++.+
T Consensus 148 ~ciedl 153 (213)
T 3jyw_F 148 LSIDDL 153 (213)
T ss_dssp CCHHHH
T ss_pred eeHHHH
Confidence 344443
No 82
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=41.64 E-value=13 Score=28.76 Aligned_cols=32 Identities=28% Similarity=0.612 Sum_probs=24.0
Q ss_pred ccccccccccccccEEecc-CCcchHhHHHHHHh
Q 017319 322 EHNCCVCMVRHKGAAFIPC-GHTFCRLCSRELWV 354 (373)
Q Consensus 322 ~l~CpICle~~~~pv~LPC-GH~FC~sCI~rwlr 354 (373)
..-|.||.+.- ....+.| +-.||..|..++..
T Consensus 8 ~pWC~ICneDA-tlrC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 8 LPWCCICNEDA-TLRCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CSSCTTTCSCC-CEEETTTTSEEECSSHHHHHTT
T ss_pred CCeeEEeCCCC-eEEecCCCCceehHHHHHHHcc
Confidence 45699999873 3344578 67899999998863
No 83
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=40.92 E-value=14 Score=27.58 Aligned_cols=40 Identities=25% Similarity=0.525 Sum_probs=28.5
Q ss_pred cccccccccccccEEe---ccCCcchHhHHHHHHhcCCCCccc
Q 017319 323 HNCCVCMVRHKGAAFI---PCGHTFCRLCSRELWVQRGNCPLC 362 (373)
Q Consensus 323 l~CpICle~~~~pv~L---PCGH~FC~sCI~rwlr~s~~CPlC 362 (373)
..|-.|+..+...... .|++.||..|=.=....-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3598999888654323 488999999965444444679988
No 84
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=40.77 E-value=12 Score=28.18 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=28.8
Q ss_pred ccccccccccccccEEeccCCcchHhHHHHHHhcC----CCCcccccc
Q 017319 322 EHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQR----GNCPLCNGF 365 (373)
Q Consensus 322 ~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s----~~CPlCRa~ 365 (373)
...|.||.+.-.-..--.|...||..|+...+... -.|+.|...
T Consensus 12 ~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 35699998643211111478889999997665543 269999754
No 85
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=38.17 E-value=35 Score=27.90 Aligned_cols=47 Identities=28% Similarity=0.567 Sum_probs=32.7
Q ss_pred Ccccccccccccc----ccEEe---ccCCcchHhHHHHHHhcC-CCCcccccchh
Q 017319 321 IEHNCCVCMVRHK----GAAFI---PCGHTFCRLCSRELWVQR-GNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~----~pv~L---PCGH~FC~sCI~rwlr~s-~~CPlCRa~i~ 367 (373)
....|.||-+.+- .-++. .|+-..|..|+.--.+.. ..||.|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4468999998752 12344 466667999997665544 56999988765
No 86
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=36.60 E-value=4.7 Score=27.21 Aligned_cols=14 Identities=29% Similarity=0.403 Sum_probs=10.8
Q ss_pred cccccccccccccc
Q 017319 322 EHNCCVCMVRHKGA 335 (373)
Q Consensus 322 ~l~CpICle~~~~p 335 (373)
.+.||||+..+..+
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 48899999877654
No 87
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=35.60 E-value=12 Score=32.75 Aligned_cols=47 Identities=21% Similarity=0.454 Sum_probs=33.8
Q ss_pred Cccccccccccccc---cEEeccCCcchHhHHHHHHhcCCCCcccccchh
Q 017319 321 IEHNCCVCMVRHKG---AAFIPCGHTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~~---pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
.-+.|..|...+.. .....=|..||..|..+.+.....|..|...|.
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 45788888887763 444456777999999876543336999988875
No 88
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=33.05 E-value=9.1 Score=37.12 Aligned_cols=30 Identities=30% Similarity=0.584 Sum_probs=0.0
Q ss_pred cccccccccccc----cEEeccCCcchHhHHHHH
Q 017319 323 HNCCVCMVRHKG----AAFIPCGHTFCRLCSREL 352 (373)
Q Consensus 323 l~CpICle~~~~----pv~LPCGH~FC~sCI~rw 352 (373)
..|.+|...|.- -....||+.||..|....
T Consensus 376 ~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~ 409 (434)
T 3mpx_A 376 MMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNK 409 (434)
T ss_dssp ----------------------------------
T ss_pred CcCCCcCCCCCCcchhhhcccCcCEeehhhCCCe
Confidence 469999987741 223379999999998654
No 89
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=32.50 E-value=34 Score=27.72 Aligned_cols=32 Identities=28% Similarity=0.608 Sum_probs=23.9
Q ss_pred CccccccccccccccEEec---cCCcchHhHHHHHH
Q 017319 321 IEHNCCVCMVRHKGAAFIP---CGHTFCRLCSRELW 353 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LP---CGH~FC~sCI~rwl 353 (373)
.+..|.||...- .-.++| |+-.|+..|+.++-
T Consensus 14 ~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~g 48 (89)
T 1wil_A 14 NDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRMG 48 (89)
T ss_dssp CSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHHT
T ss_pred CCcccCcccccc-ccceeccccccccccHhhccccc
Confidence 557899998644 334555 67889999999973
No 90
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=31.94 E-value=22 Score=28.72 Aligned_cols=47 Identities=26% Similarity=0.420 Sum_probs=34.0
Q ss_pred Ccccccccccccc---ccEEeccCCcchHhHHHHHHhcCCCCcccccchh
Q 017319 321 IEHNCCVCMVRHK---GAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~---~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
.-+.|..|...+. ......=|..||..|..+.+.....|..|...|.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 5578888888774 2344455677999999887654447999988875
No 91
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=30.60 E-value=17 Score=30.25 Aligned_cols=13 Identities=31% Similarity=0.828 Sum_probs=11.3
Q ss_pred cchHhHHHHHHhc
Q 017319 343 TFCRLCSRELWVQ 355 (373)
Q Consensus 343 ~FC~sCI~rwlr~ 355 (373)
.||..|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999874
No 92
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=30.31 E-value=17 Score=30.15 Aligned_cols=13 Identities=31% Similarity=0.823 Sum_probs=11.2
Q ss_pred cchHhHHHHHHhc
Q 017319 343 TFCRLCSRELWVQ 355 (373)
Q Consensus 343 ~FC~sCI~rwlr~ 355 (373)
.||..|+.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999874
No 93
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=29.53 E-value=22 Score=26.03 Aligned_cols=42 Identities=21% Similarity=0.487 Sum_probs=27.8
Q ss_pred CccccccccccccccEEe---ccCCcchHhHHHHHHhcC----CCCcccccc
Q 017319 321 IEHNCCVCMVRHKGAAFI---PCGHTFCRLCSRELWVQR----GNCPLCNGF 365 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~L---PCGH~FC~sCI~rwlr~s----~~CPlCRa~ 365 (373)
....|.||...- .++ .|...|+..|+..-+... -.||.|...
T Consensus 10 ~~~~C~vC~~~g---~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQGG---EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCCS---SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCCCC---cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 446799998742 233 466779999997644322 359999753
No 94
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=29.27 E-value=21 Score=28.15 Aligned_cols=31 Identities=29% Similarity=0.643 Sum_probs=21.4
Q ss_pred Ccccccccccccccc----EEeccCCcchHhHHHH
Q 017319 321 IEHNCCVCMVRHKGA----AFIPCGHTFCRLCSRE 351 (373)
Q Consensus 321 ~~l~CpICle~~~~p----v~LPCGH~FC~sCI~r 351 (373)
....|.+|...|.-- ---.||+.||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 345799999877421 1236999999999754
No 95
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=27.87 E-value=20 Score=29.98 Aligned_cols=29 Identities=31% Similarity=0.715 Sum_probs=21.0
Q ss_pred ccccccccccccc----EEeccCCcchHhHHHH
Q 017319 323 HNCCVCMVRHKGA----AFIPCGHTFCRLCSRE 351 (373)
Q Consensus 323 l~CpICle~~~~p----v~LPCGH~FC~sCI~r 351 (373)
..|.+|...|.-. .--.||+.||..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4699999877521 2236999999999754
No 96
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=27.85 E-value=17 Score=27.27 Aligned_cols=47 Identities=21% Similarity=0.395 Sum_probs=30.6
Q ss_pred ccccccccccccccEEec---cCCcchHhHHHHHHhc----CCCCcccccchhh
Q 017319 322 EHNCCVCMVRHKGAAFIP---CGHTFCRLCSRELWVQ----RGNCPLCNGFILE 368 (373)
Q Consensus 322 ~l~CpICle~~~~pv~LP---CGH~FC~sCI~rwlr~----s~~CPlCRa~i~e 368 (373)
...|.||......-.++- |..-|+..|+...... ...||.|...+.+
T Consensus 18 ~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 18 IWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 356999987654433443 6666899998543332 2469999876654
No 97
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=27.05 E-value=5.4 Score=30.89 Aligned_cols=20 Identities=40% Similarity=1.100 Sum_probs=15.8
Q ss_pred ccCCcchHhHHHHHHhcCCCCc
Q 017319 339 PCGHTFCRLCSRELWVQRGNCP 360 (373)
Q Consensus 339 PCGH~FC~sCI~rwlr~s~~CP 360 (373)
.|++.||..|...|.. ..|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 4899999999988755 5564
No 98
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=26.67 E-value=6.3 Score=33.29 Aligned_cols=41 Identities=24% Similarity=0.611 Sum_probs=25.6
Q ss_pred cccccccccccc----cEEeccCCcchHhHHHHHHhcCCCCcccc
Q 017319 323 HNCCVCMVRHKG----AAFIPCGHTFCRLCSRELWVQRGNCPLCN 363 (373)
Q Consensus 323 l~CpICle~~~~----pv~LPCGH~FC~sCI~rwlr~s~~CPlCR 363 (373)
..|..|...|.- -....||..||..|..........|-.|-
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 569999887742 22237999999999765433334566663
No 99
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=25.83 E-value=44 Score=33.42 Aligned_cols=45 Identities=20% Similarity=0.368 Sum_probs=28.7
Q ss_pred CccccccccccccccEEe--ccCCcchHhHHHHHHhcC----------CCCcccccc
Q 017319 321 IEHNCCVCMVRHKGAAFI--PCGHTFCRLCSRELWVQR----------GNCPLCNGF 365 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~L--PCGH~FC~sCI~rwlr~s----------~~CPlCRa~ 365 (373)
.+..|.+|-+--.-...- .|...||..||.+.+-.. -.|-+|.-.
T Consensus 92 ~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 92 YQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 345688887643211111 688889999998886332 368888643
No 100
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.09 E-value=22 Score=32.36 Aligned_cols=30 Identities=30% Similarity=0.711 Sum_probs=21.8
Q ss_pred ccccccccccccc----cEEeccCCcchHhHHHH
Q 017319 322 EHNCCVCMVRHKG----AAFIPCGHTFCRLCSRE 351 (373)
Q Consensus 322 ~l~CpICle~~~~----pv~LPCGH~FC~sCI~r 351 (373)
...|.+|...|.- -..-.||+.||..|...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 3579999987742 22236999999999754
No 101
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=24.70 E-value=52 Score=27.98 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=32.5
Q ss_pred CccccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccccchh
Q 017319 321 IEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
.-+.|..|...+....+..=|..||..|..+.+ ...|..|...|.
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~~C~~C~~~I~ 76 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIP 76 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH--SCBCTTTCCBCC
T ss_pred ccCccCCCCCcCCCCCcccCCeeeecccccccc--cccccccccccC
Confidence 557888998888654454556779999987654 357888877765
No 102
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=24.58 E-value=29 Score=26.71 Aligned_cols=29 Identities=31% Similarity=0.736 Sum_probs=20.9
Q ss_pred ccccccccccccc----EEeccCCcchHhHHHH
Q 017319 323 HNCCVCMVRHKGA----AFIPCGHTFCRLCSRE 351 (373)
Q Consensus 323 l~CpICle~~~~p----v~LPCGH~FC~sCI~r 351 (373)
..|.+|...|.-- ---.||..||..|...
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 4699999887521 1236999999999754
No 103
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=23.72 E-value=21 Score=32.08 Aligned_cols=30 Identities=27% Similarity=0.637 Sum_probs=21.7
Q ss_pred ccccccccccccc----cEEeccCCcchHhHHHH
Q 017319 322 EHNCCVCMVRHKG----AAFIPCGHTFCRLCSRE 351 (373)
Q Consensus 322 ~l~CpICle~~~~----pv~LPCGH~FC~sCI~r 351 (373)
...|.+|...|.- --.-.||+.||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4689999987741 12236999999999754
No 104
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=23.14 E-value=29 Score=26.19 Aligned_cols=28 Identities=25% Similarity=0.599 Sum_probs=20.4
Q ss_pred ccccccccccccc----EEeccCCcchHhHHH
Q 017319 323 HNCCVCMVRHKGA----AFIPCGHTFCRLCSR 350 (373)
Q Consensus 323 l~CpICle~~~~p----v~LPCGH~FC~sCI~ 350 (373)
..|.+|...|.-- ---.||..||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 3699999877521 122699999999974
No 105
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.77 E-value=29 Score=26.86 Aligned_cols=29 Identities=28% Similarity=0.662 Sum_probs=20.7
Q ss_pred ccccccccccccc----EEeccCCcchHhHHHH
Q 017319 323 HNCCVCMVRHKGA----AFIPCGHTFCRLCSRE 351 (373)
Q Consensus 323 l~CpICle~~~~p----v~LPCGH~FC~sCI~r 351 (373)
..|.+|...|.-- ---.||..||..|...
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 4699999887421 1236999999999653
No 106
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.77 E-value=41 Score=24.91 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=21.3
Q ss_pred ccccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccccchh
Q 017319 322 EHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 322 ~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
...|..|...+...++..-+..|+..| +.|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCccccCCCCccCcEEEECcceeCcCc--------CeeCCCCCCCC
Confidence 456777777766544444455555444 34555555543
No 107
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=22.66 E-value=25 Score=30.05 Aligned_cols=44 Identities=20% Similarity=0.422 Sum_probs=28.2
Q ss_pred Ccccccccccccc-----ccEEeccCCcchHhHHHHHHhcC----CCCccccc
Q 017319 321 IEHNCCVCMVRHK-----GAAFIPCGHTFCRLCSRELWVQR----GNCPLCNG 364 (373)
Q Consensus 321 ~~l~CpICle~~~-----~pv~LPCGH~FC~sCI~rwlr~s----~~CPlCRa 364 (373)
....|.+|...+. ..+...|.|.+|..|-....... -.|-+|+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 4467999998872 22334699999999975432111 24777754
No 108
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=22.65 E-value=30 Score=27.26 Aligned_cols=30 Identities=30% Similarity=0.735 Sum_probs=21.4
Q ss_pred cccccccccccc----cEEeccCCcchHhHHHHH
Q 017319 323 HNCCVCMVRHKG----AAFIPCGHTFCRLCSREL 352 (373)
Q Consensus 323 l~CpICle~~~~----pv~LPCGH~FC~sCI~rw 352 (373)
..|.+|...|.- -.-..||+.||..|....
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 469999987742 122369999999997643
No 109
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=21.86 E-value=15 Score=26.88 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=26.5
Q ss_pred ccccccccccccccEEeccCCcchHhHHHHHHhcC----CCCcccccch
Q 017319 322 EHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQR----GNCPLCNGFI 366 (373)
Q Consensus 322 ~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s----~~CPlCRa~i 366 (373)
...|.||...-.-..--.|...|+..|+..-+... -.||.|....
T Consensus 9 ~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 9 MEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 45699998632111111466778999987543322 2599997543
No 110
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=21.81 E-value=9.3 Score=28.31 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=21.3
Q ss_pred cccccccccccc-----cEEe-c--cCCcchHhHHHHHHhc
Q 017319 323 HNCCVCMVRHKG-----AAFI-P--CGHTFCRLCSRELWVQ 355 (373)
Q Consensus 323 l~CpICle~~~~-----pv~L-P--CGH~FC~sCI~rwlr~ 355 (373)
..||-|...+.. -+.- . |++.||..|...|...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 458888876642 1111 2 8888888888777544
No 111
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=21.66 E-value=66 Score=27.81 Aligned_cols=43 Identities=19% Similarity=0.440 Sum_probs=28.0
Q ss_pred ccccccccccccccEEeccCCcchHhHHHHHHh---------c--CCCCccccc
Q 017319 322 EHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWV---------Q--RGNCPLCNG 364 (373)
Q Consensus 322 ~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr---------~--s~~CPlCRa 364 (373)
+..|.||.+--.-..--.|-..||..|+...+. . .-.|++|+.
T Consensus 63 ~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 356999987432111125778899999986552 1 136999974
No 112
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=21.53 E-value=31 Score=30.09 Aligned_cols=43 Identities=21% Similarity=0.514 Sum_probs=27.5
Q ss_pred Ccccccccccccc-----ccEEeccCCcchHhHHHHHHhcC--CCCccccc
Q 017319 321 IEHNCCVCMVRHK-----GAAFIPCGHTFCRLCSRELWVQR--GNCPLCNG 364 (373)
Q Consensus 321 ~~l~CpICle~~~-----~pv~LPCGH~FC~sCI~rwlr~s--~~CPlCRa 364 (373)
....|.+|...|. ..+...|.|.+|..|-. +.... -.|-+|..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 3467999999763 22334699999999973 22221 24777754
No 113
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.18 E-value=50 Score=24.99 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=20.6
Q ss_pred ccccccccccccccEEeccCCcchHhHHHHHHhcCCCCcccccchh
Q 017319 322 EHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 322 ~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
...|..|...+...++..-+..|+..| +.|-.|...|.
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 62 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPEC--------FVCADCNLNLK 62 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTT--------CCCSSSCCCTT
T ss_pred CCCcccCCCEecccEEEECCceECccC--------CEecCCCCCCC
Confidence 345777777666544444444455444 45555555543
No 114
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=20.85 E-value=41 Score=26.01 Aligned_cols=30 Identities=27% Similarity=0.543 Sum_probs=21.5
Q ss_pred cccccccccccccc----EEeccCCcchHhHHHH
Q 017319 322 EHNCCVCMVRHKGA----AFIPCGHTFCRLCSRE 351 (373)
Q Consensus 322 ~l~CpICle~~~~p----v~LPCGH~FC~sCI~r 351 (373)
...|.+|...|.-- ---.||+.||..|...
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 35699999887421 2236999999999754
No 115
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=20.60 E-value=51 Score=26.38 Aligned_cols=45 Identities=18% Similarity=0.311 Sum_probs=33.4
Q ss_pred Ccccccccccccccc-EEeccCCcchHhHHHHHHhcCCCCcccccchh
Q 017319 321 IEHNCCVCMVRHKGA-AFIPCGHTFCRLCSRELWVQRGNCPLCNGFIL 367 (373)
Q Consensus 321 ~~l~CpICle~~~~p-v~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i~ 367 (373)
.-+.|..|...+... ....=|..+|..|..+. ....|..|...|.
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAID 74 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCC
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcC--cCccCcccCCcCC
Confidence 457888998888653 33446777999998764 3467999998887
No 116
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=20.54 E-value=15 Score=30.63 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=16.4
Q ss_pred cEEeccCCcchHhHHHHHHhcCCCCcccccch
Q 017319 335 AAFIPCGHTFCRLCSRELWVQRGNCPLCNGFI 366 (373)
Q Consensus 335 pv~LPCGH~FC~sCI~rwlr~s~~CPlCRa~i 366 (373)
+....||+.|+ .-+.....||.|+..-
T Consensus 68 ~~C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 68 AQCRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp CBBTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred cChhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 33446888882 1223336899998653
No 117
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.02 E-value=11 Score=27.01 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=25.2
Q ss_pred CccccccccccccccEEeccCCcchHhHHHHHHhcC----CCCccccc
Q 017319 321 IEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQR----GNCPLCNG 364 (373)
Q Consensus 321 ~~l~CpICle~~~~pv~LPCGH~FC~sCI~rwlr~s----~~CPlCRa 364 (373)
....|.||...-.-..--.|...|+..|+..-+... -.||.|..
T Consensus 8 ~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 446699998742111111466678888887543322 24887753
Done!