Query 017321
Match_columns 373
No_of_seqs 285 out of 773
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 12:33:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017321.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017321hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vuti1 g.39.1.1 (I:671-712) E 99.6 4.6E-17 3.4E-21 114.2 3.7 40 224-266 2-41 (42)
2 d3gata_ g.39.1.1 (A:) Erythroi 99.6 5.3E-16 3.9E-20 118.6 5.9 55 222-279 4-58 (66)
3 d1y0ja1 g.39.1.1 (A:200-238) E 99.5 6.8E-16 4.9E-20 106.6 2.7 37 222-261 2-38 (39)
4 d2yrka1 g.37.1.4 (A:8-55) Zinc 55.9 0.79 5.8E-05 31.6 -0.8 24 241-264 1-24 (48)
5 d2ds5a1 g.39.1.11 (A:11-48) Cl 49.1 4.6 0.00033 26.3 2.2 30 223-254 2-31 (38)
6 d1pd0a5 g.41.10.1 (A:216-300) 45.3 2.6 0.00019 31.4 0.5 33 222-256 13-45 (85)
7 d1dl6a_ g.41.3.1 (A:) Transcri 35.0 4.8 0.00035 28.2 0.6 30 222-256 11-40 (58)
8 d1dcqa2 g.45.1.1 (A:247-368) P 34.4 12 0.00086 29.2 3.0 36 222-261 15-50 (122)
9 d1u5ka2 g.45.1.2 (A:81-237) Re 34.1 5.8 0.00042 31.6 1.0 27 223-253 71-97 (157)
10 d1pfta_ g.41.3.1 (A:) Transcri 29.7 4.7 0.00034 27.4 -0.3 29 223-256 6-34 (50)
11 d1neea2 g.59.1.1 (A:99-135) Zi 25.3 8.7 0.00064 24.8 0.5 28 224-254 3-30 (37)
No 1
>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}
Probab=99.63 E-value=4.6e-17 Score=114.19 Aligned_cols=40 Identities=48% Similarity=0.949 Sum_probs=37.4
Q ss_pred cccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCC
Q 017321 224 RCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLS 266 (373)
Q Consensus 224 ~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~~s 266 (373)
.|+||++ +.||+||+||.| ++|||||||||+++++.||++
T Consensus 2 ~C~nC~t--t~Tp~WRr~~~G-~~lCNACGl~~k~~g~~RP~s 41 (42)
T d2vuti1 2 TCTNCFT--QTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLS 41 (42)
T ss_dssp CCSSSCC--CCCSCCEECTTS-CEECHHHHHHHHHHSSCCCCC
T ss_pred cCCCCCC--CCCccceeCCCC-CCchhhhhHHHHHcCCCCCCC
Confidence 5999999 479999999999 799999999999999999986
No 2
>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=99.59 E-value=5.3e-16 Score=118.58 Aligned_cols=55 Identities=27% Similarity=0.532 Sum_probs=45.6
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCCCCCCCCcCCCCC
Q 017321 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLSMDQLEP 279 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~~sk~~~~~~~~~~~~ 279 (373)
...|+||++ +.||+||+||.| .+|||||||||++++..|+++..+..+..+...+
T Consensus 4 g~~C~nCgt--~~Tp~WRr~~~G-~~lCNACGl~~~~~~~~RP~~~~~~~i~~r~r~~ 58 (66)
T d3gata_ 4 GTVCSNCQT--STTTLWRRSPMG-DPVCNACGLYYKLHQVNRPLTMRKDGIQTRNRKV 58 (66)
T ss_dssp TCCCTTTCC--CCCSSEEECTTS-CEEEHHHHHHHHHHCSCCCGGGCCSSCCCCSCCC
T ss_pred CCCCCCCCC--CCCcccccCCCC-CcccchhHHHHHHhCCcCCccccccccccccCCC
Confidence 347999999 469999999999 6999999999999999999887665555444433
No 3
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.54 E-value=6.8e-16 Score=106.64 Aligned_cols=37 Identities=46% Similarity=0.953 Sum_probs=33.4
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCC
Q 017321 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGT 261 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~ 261 (373)
.+.|++|+++ .||+||+||.| ++|||||||+|+++++
T Consensus 2 ~r~C~~Cgtt--~Tp~WR~gp~G-~~LCNACGl~~r~~G~ 38 (39)
T d1y0ja1 2 ARECVNCGAT--ATPLWRRDRTG-HYLCNACGLYHKMNGQ 38 (39)
T ss_dssp CCCCSSSCCC--CCSCCEECTTS-CEECSSHHHHHHHSCC
T ss_pred cCCCCCCCCC--CCcccccCCCC-CEeeHHhHHHHHHhCC
Confidence 3579999994 69999999999 6899999999999875
No 4
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.93 E-value=0.79 Score=31.59 Aligned_cols=24 Identities=29% Similarity=0.823 Sum_probs=19.3
Q ss_pred CCCCCcccchHHHHHHHhcCCCCC
Q 017321 241 GPAGPRTLCNACGLMWANKGTLRD 264 (373)
Q Consensus 241 GP~G~~~LCNACGl~~~~~~~lr~ 264 (373)
||+||+.-|.-|+..|.-+-..|+
T Consensus 1 g~~gp~~eC~lC~vKYs~~~Svrd 24 (48)
T d2yrka1 1 GTDGTKPECTLCGVKYSARLSIRD 24 (48)
T ss_dssp CCCCCCSCCTTTTCCCCSSSCHHH
T ss_pred CCCCCcccCcccceeeeeecchHh
Confidence 799999999999998876654443
No 5
>d2ds5a1 g.39.1.11 (A:11-48) ClpX chaperone zinc binding domain {Escherichia coli [TaxId: 562]}
Probab=49.08 E-value=4.6 Score=26.27 Aligned_cols=30 Identities=27% Similarity=0.659 Sum_probs=24.6
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHH
Q 017321 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGL 254 (373)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl 254 (373)
..|+.||.+...+-..=.||.. ..||.|=.
T Consensus 2 l~CSFCgk~~~eV~~LI~G~~~--~ICd~CV~ 31 (38)
T d2ds5a1 2 LYCSFCGKSQHEVRKLIAGPSV--YICDECVD 31 (38)
T ss_dssp CBCTTTCCBTTTSSCEEECSSC--EEEHHHHH
T ss_pred cEeeCCCCCHHHHHHHhcCCCC--EEcHHHHH
Confidence 4799999988778778889865 99999954
No 6
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=45.29 E-value=2.6 Score=31.39 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=28.2
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHH
Q 017321 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMW 256 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~ 256 (373)
..+|..|++ ..-|..+--..|.+..||-|+..-
T Consensus 13 i~RC~~C~a--yiNP~~~~~~~g~~w~C~~C~~~N 45 (85)
T d1pd0a5 13 IVRCRRCRS--YMNPFVTFIEQGRRWRCNFCRLAN 45 (85)
T ss_dssp CCBCSSSCC--BCCTTCEEETTTTEEECTTTCCEE
T ss_pred CccccCCcC--EECCceEEeCCCCEEECCCCCccc
Confidence 468999999 569999988999899999998653
No 7
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.02 E-value=4.8 Score=28.17 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=19.2
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHH
Q 017321 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMW 256 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~ 256 (373)
...|.+|+.. -.--+--.| ...|..||+-.
T Consensus 11 ~~~Cp~Cgs~----~ii~D~~~G-e~vC~~CG~Vl 40 (58)
T d1dl6a_ 11 RVTCPNHPDA----ILVEDYRAG-DMICPECGLVV 40 (58)
T ss_dssp CCSBTTBSSS----CCEECSSSC-CEECTTTCCEE
T ss_pred ccCCCCCCCC----CEEEECCCC-cEecccCCCEe
Confidence 3578888863 232334445 68899998754
No 8
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.42 E-value=12 Score=29.24 Aligned_cols=36 Identities=22% Similarity=0.459 Sum_probs=30.7
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCC
Q 017321 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGT 261 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~ 261 (373)
...|..|+.. -|.|=.-..| ..||-.|.-..+..|.
T Consensus 15 N~~CaDC~~~---~p~w~s~n~G-vfvC~~CsgiHR~lg~ 50 (122)
T d1dcqa2 15 NDVCCDCGAP---DPTWLSTNLG-ILTCIECSGIHRELGV 50 (122)
T ss_dssp TTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCccCCCCCC---CCCeEEecCC-EEEchhhhHHHhcCCC
Confidence 4689999984 7999999999 8999999888877664
No 9
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=34.09 E-value=5.8 Score=31.63 Aligned_cols=27 Identities=33% Similarity=0.877 Sum_probs=20.5
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHH
Q 017321 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACG 253 (373)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACG 253 (373)
-.|..||.. .+.|..-..| ..+|..|+
T Consensus 71 ~~C~~cg~~---~~~~f~~~~G-g~~C~~c~ 97 (157)
T d1u5ka2 71 ARCARCGAP---DPEHPDPLGG-QLLCSKCA 97 (157)
T ss_dssp SBCTTTCCB---SCCEECTTTS-SEECTTTC
T ss_pred hhHhcCCCC---CCCcccccCC-eeECCCCC
Confidence 469999974 4666665555 89999995
No 10
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=29.72 E-value=4.7 Score=27.37 Aligned_cols=29 Identities=21% Similarity=0.631 Sum_probs=16.5
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHHH
Q 017321 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMW 256 (373)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~ 256 (373)
..|..|+.. -.-.+--.| ...|..||+-.
T Consensus 6 ~~Cp~Cgs~----~iv~D~~~G-e~vC~~CG~Vi 34 (50)
T d1pfta_ 6 KVCPACESA----ELIYDPERG-EIVCAKCGYVI 34 (50)
T ss_dssp CSCTTTSCC----CEEEETTTT-EEEESSSCCBC
T ss_pred ccCcCCCCC----cEEEECCCC-eEecccCCcEe
Confidence 467777652 133333444 67777777643
No 11
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=25.29 E-value=8.7 Score=24.78 Aligned_cols=28 Identities=32% Similarity=0.750 Sum_probs=19.2
Q ss_pred cccccccCCCCccccccCCCCCcccchHHHH
Q 017321 224 RCQHCGVSENNTPAMRRGPAGPRTLCNACGL 254 (373)
Q Consensus 224 ~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl 254 (373)
.|..|+.+ .|-+-|.+=. .-.-|+|||-
T Consensus 3 ~C~~C~sp--DT~l~ke~R~-~~l~C~aCGa 30 (37)
T d1neea2 3 ICHECNRP--DTRIIREGRI-SLLKCEACGA 30 (37)
T ss_dssp HHTCCSSC--SSCCEEETTT-TEEECSTTSC
T ss_pred ECCCCCCC--CCEEEEcCCE-EEEEeccCCC
Confidence 48888886 5778887521 1356999984
Done!