Query 017323
Match_columns 373
No_of_seqs 142 out of 456
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 07:34:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02291 phospho-2-dehydro-3-d 100.0 1E-139 2E-144 1051.1 28.5 298 75-372 18-315 (474)
2 TIGR01358 DAHP_synth_II 3-deox 100.0 4E-139 9E-144 1042.4 26.9 295 77-372 1-295 (443)
3 PF01474 DAHP_synth_2: Class-I 100.0 2E-137 4E-142 1029.3 14.8 297 76-372 1-298 (439)
4 COG3200 AroG 3-deoxy-D-arabino 100.0 4E-134 8E-139 985.5 22.5 297 75-372 3-299 (445)
5 PF00793 DAHP_synth_1: DAHP sy 74.7 1.5 3.3E-05 42.8 1.4 40 332-372 108-147 (270)
6 PRK09261 phospho-2-dehydro-3-d 66.4 3.3 7.3E-05 42.4 1.7 39 332-371 157-195 (349)
7 TIGR01309 L30P_arch 50S riboso 58.8 7.2 0.00016 35.6 2.3 109 86-211 27-146 (152)
8 PRK12755 phospho-2-dehydro-3-d 57.3 5.9 0.00013 40.7 1.6 39 332-371 158-196 (353)
9 PRK13296 tRNA CCA-pyrophosphor 57.2 18 0.0004 37.3 5.1 64 219-293 128-203 (360)
10 PLN03033 2-dehydro-3-deoxyphos 52.9 23 0.00049 35.8 4.8 54 128-206 11-69 (290)
11 PRK12595 bifunctional 3-deoxy- 52.2 46 0.00099 34.1 7.0 40 332-372 202-241 (360)
12 PF04136 Sec34: Sec34-like fam 47.6 7.1 0.00015 35.3 0.4 41 268-320 94-134 (157)
13 TIGR00034 aroFGH phospho-2-deh 47.2 11 0.00024 38.7 1.7 37 334-371 154-190 (344)
14 PRK12822 phospho-2-dehydro-3-d 40.8 13 0.00029 38.3 1.2 37 334-371 159-195 (356)
15 PRK01759 glnD PII uridylyl-tra 32.9 65 0.0014 36.4 5.0 64 220-293 340-415 (854)
16 cd00468 HIT_like HIT family: H 32.6 1.1E+02 0.0023 23.4 4.8 55 129-184 17-75 (86)
17 PRK12756 phospho-2-dehydro-3-d 31.3 25 0.00055 36.3 1.4 34 336-370 160-193 (348)
18 PRK06049 rpl30p 50S ribosomal 31.3 60 0.0013 29.8 3.7 109 85-211 28-148 (154)
19 PF08203 RNA_polI_A14: Yeast R 30.5 32 0.0007 28.4 1.6 18 97-114 59-76 (76)
20 PRK13398 3-deoxy-7-phosphohept 30.4 33 0.00071 33.6 2.0 39 333-372 112-150 (266)
21 PRK05722 glucose-6-phosphate 1 30.3 32 0.00069 36.8 2.0 54 143-207 258-312 (495)
22 PRK12457 2-dehydro-3-deoxyphos 29.6 93 0.002 31.4 4.9 51 131-206 14-69 (281)
23 PRK13298 tRNA CCA-pyrophosphor 29.6 1.4E+02 0.0031 31.4 6.5 26 219-244 128-164 (417)
24 TIGR01942 pcnB poly(A) polymer 29.0 1.6E+02 0.0034 31.1 6.7 58 220-292 165-235 (410)
25 TIGR02692 tRNA_CCA_actino tRNA 26.9 1.4E+02 0.0029 31.3 5.8 23 220-242 167-197 (466)
26 TIGR01693 UTase_glnD [Protein- 26.5 1.1E+02 0.0023 34.5 5.3 64 220-293 333-407 (850)
27 COG0537 Hit Diadenosine tetrap 26.1 1.1E+02 0.0023 27.0 4.2 63 140-209 44-110 (138)
28 PRK10885 cca multifunctional t 25.8 1.7E+02 0.0036 30.4 6.2 26 220-245 129-165 (409)
29 PRK08673 3-deoxy-7-phosphohept 25.5 44 0.00096 34.0 2.0 39 333-372 178-216 (335)
30 COG1342 Predicted DNA-binding 23.5 90 0.0019 27.1 3.1 29 113-141 65-94 (99)
31 PRK00275 glnD PII uridylyl-tra 23.3 1.3E+02 0.0028 34.4 5.2 64 220-293 363-439 (895)
32 PF01230 HIT: HIT domain; Int 22.2 96 0.0021 24.8 3.0 45 141-185 36-84 (98)
33 PF01785 Closter_coat: Closter 22.2 3.3E+02 0.0071 25.2 6.8 107 109-242 9-116 (188)
34 PRK13299 tRNA CCA-pyrophosphor 21.8 2E+02 0.0044 29.6 5.9 61 220-295 153-226 (394)
35 PRK13397 3-deoxy-7-phosphohept 21.4 1.1E+02 0.0025 30.0 3.8 34 158-206 29-62 (250)
36 PRK13297 tRNA CCA-pyrophosphor 21.3 1.7E+02 0.0036 30.5 5.1 59 220-292 140-213 (364)
37 PF05598 DUF772: Transposase d 20.9 1.8E+02 0.004 22.2 4.2 23 271-293 25-47 (77)
38 PF06974 DUF1298: Protein of u 20.8 62 0.0013 28.6 1.8 39 198-237 112-150 (153)
39 PRK13473 gamma-aminobutyraldeh 20.6 2.4E+02 0.0052 29.1 6.2 34 109-142 319-353 (475)
40 PRK03059 PII uridylyl-transfer 20.5 1.5E+02 0.0033 33.6 5.1 64 220-293 343-419 (856)
41 TIGR01362 KDO8P_synth 3-deoxy- 20.4 1.3E+02 0.0028 30.1 4.0 36 158-206 16-55 (258)
42 smart00718 DM4_12 DM4/DM12 fam 20.4 1.5E+02 0.0032 24.8 3.8 47 98-152 45-92 (95)
43 PRK12853 glucose-6-phosphate 1 20.1 61 0.0013 34.6 1.8 34 90-123 89-131 (482)
No 1
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=100.00 E-value=1.1e-139 Score=1051.08 Aligned_cols=298 Identities=87% Similarity=1.361 Sum_probs=293.8
Q ss_pred CCCCCcccccCccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhccChhhHH
Q 017323 75 GKWALEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIR 154 (373)
Q Consensus 75 ~~Wsp~sWr~~pa~QqP~ypD~~~L~~V~~~L~~lPPLV~a~Ei~~Lr~~LA~vA~G~aFlLQGGDCAEsF~e~~~~~I~ 154 (373)
..|+|+|||++||+|||+|||+++|+.|+++|+++||||+++||++||++||+||+|+|||||||||||+|+||++++|+
T Consensus 18 ~~W~p~sWr~~pa~QqP~y~D~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~LA~va~G~AFlLQgGDCAE~F~~~~~~~ir 97 (474)
T PLN02291 18 KKWSPDSWRSKKALQLPEYPDQAELEEVLKTLEAFPPLVFAGEARSLEERLAEAAMGRAFLLQGGDCAESFKEFNANNIR 97 (474)
T ss_pred CCCChhhhhcCccccCCCCCCHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhcCCeEEEeCCchhhhhhhhCHHHHH
Confidence 44999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeeccCccCcccCCCCCCCCCCCCChHHHHHHHHHHH
Q 017323 155 DTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSA 234 (373)
Q Consensus 155 ~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~dGv~LPsYRGD~VN~~~f~~~aR~PDP~RLl~AY~~Sa 234 (373)
+|+++|+|||.||++++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||+||+
T Consensus 98 ~k~~~llqMa~vL~~~~~~PVVkVGRiAGQyAKPRSs~~E~~dGv~LPsYRGD~VN~~e~t~~aR~PDP~Rll~aY~~Sa 177 (474)
T PLN02291 98 DTFRVLLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKDGVKLPSYRGDNINGDAFDEKSRRPDPQRMVRAYSQSA 177 (474)
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEecccccccCCCCCCCcccCCCEeccccCCccccCcCCCHhhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccc
Q 017323 235 ATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYE 314 (373)
Q Consensus 235 aTLn~lRa~~~gG~adl~~~~~W~~~f~~~s~~~~ry~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE 314 (373)
+|||+||+|..|||||||++++||++|+++++.+++|++++++|++||+||++||++.++..+++++||||||||||+||
T Consensus 178 atlnllRa~~~gg~adl~~~~~W~~~fv~~~~~~~~y~~la~~i~~al~fm~a~g~~~~~~~l~~~~~yTSHEaLlL~YE 257 (474)
T PLN02291 178 ATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMAACGLTTDHPIMTTTEFWTSHECLLLPYE 257 (474)
T ss_pred HHHHHHHHHhcCCchhhccccccchhhhccCchhhHHHHHHHHHHHHHHHHHHcCCCccccccccCceeechHhhccchh
Confidence 99999999999999999999999999999999999999999999999999999999988556889999999999999999
Q ss_pred cccccccCCCCCcccCCCCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCcccc
Q 017323 315 QALTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVFAIWDLFVI 372 (373)
Q Consensus 315 ~aLtR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGPs~tp~~~ 372 (373)
+||||.|+.+|.|||||||||||||||||||||||||||||+|||||||||+|+||++
T Consensus 258 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGPs~~pdel 315 (474)
T PLN02291 258 QALTREDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPEEL 315 (474)
T ss_pred hhhhccCCCCCCcccccccccccccccCCCCccHHHHHhcCCCCeeEEECCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986
No 2
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=100.00 E-value=4.2e-139 Score=1042.37 Aligned_cols=295 Identities=61% Similarity=1.027 Sum_probs=292.2
Q ss_pred CCCcccccCccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhccChhhHHHH
Q 017323 77 WALEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDT 156 (373)
Q Consensus 77 Wsp~sWr~~pa~QqP~ypD~~~L~~V~~~L~~lPPLV~a~Ei~~Lr~~LA~vA~G~aFlLQGGDCAEsF~e~~~~~I~~k 156 (373)
|+|+|||++||+|||+|||+++|+.|+++|+++||||+++||++||++||+||+|+|||||||||||+|+||++++|++|
T Consensus 1 w~p~sWr~~pa~QqP~y~D~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~La~va~G~aFlLQgGDCAE~F~~~~~~~i~~k 80 (443)
T TIGR01358 1 WSPQSWRSKPAAQQPTYPDAGALEAVLDTLRSLPPLVFAGEIRRLKRQLAQVAEGEAFLLQGGDCAESFKDCTADHIRNK 80 (443)
T ss_pred CCchhhhcCccccCCCCCCHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhCCCEEEEeCccccCchhhcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeeccCccCcccCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 017323 157 FRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAAT 236 (373)
Q Consensus 157 ~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~dGv~LPsYRGD~VN~~~f~~~aR~PDP~RLl~AY~~SaaT 236 (373)
+++|+|||.||++++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||+||++|
T Consensus 81 ~~~llqMa~vl~~~~~~PVVkVGRiAGQyAKPRS~~~E~~~G~~LPsYRGD~VN~~e~t~~aR~PDP~Rll~aY~~saat 160 (443)
T TIGR01358 81 LRVLLQMAVVLTYGASLPVVKVGRIAGQYAKPRSAPTETRDGVTLPSYRGDIINGPAFTEAARVPDPRRLVRAYHQSAAT 160 (443)
T ss_pred HHHHHHHHHHHhhcCCCCeEEecccccccCCCCCCCcccCCCEeccccCCccccCcCCChhhcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccc
Q 017323 237 LNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQA 316 (373)
Q Consensus 237 Ln~lRa~~~gG~adl~~~~~W~~~f~~~s~~~~ry~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~a 316 (373)
||+||+|..|||||||++++||++|+++++.+++|++++++|+++|+||++||++.++ .+++++||||||||||+||+|
T Consensus 161 ln~lRa~~~gg~adl~~~~~W~~~f~~~~~~~~~y~~la~~i~~al~fm~a~g~~~~~-~l~~~~~~TSHEaLlL~YE~a 239 (443)
T TIGR01358 161 LNLVRALTTGGYADLHQVHYWNLEFVGYSPAGARYEKLASEIDEALRFMSACGLAPRY-NLQTVEFYTSHEALLLPYEEA 239 (443)
T ss_pred HHHHHHHhcCCchhhcccchhhhhhhhcCchhhHHHHHHHHHHHHHHHHHHcCCCccc-ccCcCceeechHhhccchhhh
Confidence 9999999999999999999999999999999999999999999999999999999886 689999999999999999999
Q ss_pred cccccCCCCCcccCCCCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCcccc
Q 017323 317 LTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVFAIWDLFVI 372 (373)
Q Consensus 317 LtR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGPs~tp~~~ 372 (373)
|||.|+.+|.|||||||||||||||||||||||||||||+|||||||||+|+||++
T Consensus 240 ltR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGP~~~p~~l 295 (443)
T TIGR01358 240 LTRVDSRSGGWFDLSAHMLWIGERTRQLDGAHVEFLRGVRNPIGIKVGPSMTPDEL 295 (443)
T ss_pred hhcccCCCCCcccccccccccccccCCCCchHHHHHhcCCCCeeEEECCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999986
No 3
>PF01474 DAHP_synth_2: Class-II DAHP synthetase family; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2.5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 3NUD_A 3KGF_A 2W19_A 3NUE_B 3PFP_A 2B7O_B 3RZI_A 3NV8_B 2W1A_A.
Probab=100.00 E-value=2.1e-137 Score=1029.34 Aligned_cols=297 Identities=59% Similarity=1.030 Sum_probs=239.6
Q ss_pred CCCCcccccCccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhccChhhHHH
Q 017323 76 KWALEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRD 155 (373)
Q Consensus 76 ~Wsp~sWr~~pa~QqP~ypD~~~L~~V~~~L~~lPPLV~a~Ei~~Lr~~LA~vA~G~aFlLQGGDCAEsF~e~~~~~I~~ 155 (373)
+|+|+|||++||+|||+|||+.+|+.|+++|+++||||+++||++||++||+||+|+|||||||||||+|+||++++|++
T Consensus 1 ~W~p~sWr~~pa~QqP~ypD~~~L~~v~~~L~~~PPLV~~~Ei~~Lr~~La~va~G~AFlLQgGDCAEsF~e~~~~~I~~ 80 (439)
T PF01474_consen 1 EWSPSSWRSKPAAQQPEYPDPDALAEVLAKLASLPPLVFAGEIRRLREQLADVARGEAFLLQGGDCAESFAECTADHIRD 80 (439)
T ss_dssp ---HHHHHTS--SS---S-HHHHH-HHHHHHTTS--SS-HHHHHHHHHHHHHHHTTSSEEEEEEESS--STT-SHHHHHH
T ss_pred CCChhhHHhCCcccCCCCcCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHcCCeEEEeCCCcccChhhcChHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeeccCccCcccCCCCCCCCCCCCChHHHHHHHHHHHH
Q 017323 156 TFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAA 235 (373)
Q Consensus 156 k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~dGv~LPsYRGD~VN~~~f~~~aR~PDP~RLl~AY~~Saa 235 (373)
|+++|+|||.||++++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||++|++
T Consensus 81 k~~~Llqma~vL~~~~~~PVVrVGRiAGQyAKPRS~~~E~vdG~~LPsyRGD~VN~~~~~~~aR~PDP~RlL~aY~~Saa 160 (439)
T PF01474_consen 81 KFKLLLQMALVLTYGAGKPVVRVGRIAGQYAKPRSSPTETVDGVELPSYRGDIVNGPEFTPEARRPDPQRLLRAYFHSAA 160 (439)
T ss_dssp HHHHHHHHHHHHHHHHTS-EEEEEEBSS------S-SB----TTSSB----TTTS-SSSSHHHHS--THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEechhhhcccCCCCCCccCCCCccCcccccccccCCCCChhhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHHHHHHHHhHHHHhcCCCC-CCCCCccceeecccccccccc
Q 017323 236 TLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLD-HPAMTSTEFWTSHECLLLPYE 314 (373)
Q Consensus 236 TLn~lRa~~~gG~adl~~~~~W~~~f~~~s~~~~ry~~~~~~i~~al~Fm~a~G~~~~-~~~~~~~~~~TSHEaLLL~YE 314 (373)
|||+||+|++||||||+++++||++|+++++.+++|++++++|++||+||++||++.+ ++.+.+++||||||||||+||
T Consensus 161 tLn~lRa~~~~G~Adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~a~g~~~~~~~~~~~~~~~tSHEaLlL~YE 240 (439)
T PF01474_consen 161 TLNLLRAFASGGFADLHHVHQWNLDFVRNSPLGERYEELADEIDDALRFMRACGVDSDSSPALRTVDFYTSHEALLLDYE 240 (439)
T ss_dssp HHHHHHHHHTSCCG-HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTT-----GGGST---EEEEEE---HHHH
T ss_pred HHHHHHHHhcCChhhhcccccchhhhhcCChhhhHHHHHHHHHHHHHHHHHHcCCCccccccccccccccchHHhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999976 567899999999999999999
Q ss_pred cccccccCCCCCcccCCCCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCcccc
Q 017323 315 QALTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVFAIWDLFVI 372 (373)
Q Consensus 315 ~aLtR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGPs~tp~~~ 372 (373)
+||||.|+.+|.||+||||||||||||||+|||||||||||+|||||||||+|+||++
T Consensus 241 ~altR~d~~~g~~y~~SaH~~WIGeRTRq~dgAHve~~~gi~NPigvKvGP~~~~~~l 298 (439)
T PF01474_consen 241 EALTRQDSDTGRWYNTSAHFLWIGERTRQLDGAHVEFLRGIANPIGVKVGPSMTPEEL 298 (439)
T ss_dssp HHTEEEESSSEEEEETT-SEEEE-TTT--TTSHHHHHHHHB-S-EEEEE-TT--HHHH
T ss_pred hhhccccCCCCCccccccceeeecccccCCchhHHHHHhhccCccceeeCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999985
No 4
>COG3200 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-134 Score=985.49 Aligned_cols=297 Identities=60% Similarity=1.003 Sum_probs=293.3
Q ss_pred CCCCCcccccCccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhccChhhHH
Q 017323 75 GKWALEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIR 154 (373)
Q Consensus 75 ~~Wsp~sWr~~pa~QqP~ypD~~~L~~V~~~L~~lPPLV~a~Ei~~Lr~~LA~vA~G~aFlLQGGDCAEsF~e~~~~~I~ 154 (373)
..|+|.||+.||++|||.|||..+|+.|.++|+++|||||++|+++||++||+||.|+|||||||||||+|+++++++||
T Consensus 3 ~~w~p~swr~kpi~Q~p~ypd~~~l~~v~a~L~~~PplvfAgEar~Lk~~LA~Va~g~AfLLQgGDCAEsf~~~~a~~Ir 82 (445)
T COG3200 3 TTWLPNSWRAKPIQQQPTYPDAQALARVEARLRSYPPLVFAGEARRLQEQLARVAKGEAFLLQGGDCAESFADHGADNIR 82 (445)
T ss_pred cccCcchhhcCchhcCCCCCCHHHHHHHHHHHhcCCCeeecHHHHHHHHHHHHHhcCceEEEeCCcHHHHHHhcccHHHH
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeeccCccCcccCCCCCCCCCCCCChHHHHHHHHHHH
Q 017323 155 DTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSA 234 (373)
Q Consensus 155 ~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~dGv~LPsYRGD~VN~~~f~~~aR~PDP~RLl~AY~~Sa 234 (373)
++|++|+|||.||+|++++|||||||||||||||||+++|+.+|++|||||||||||.+|++++|+|||+||++||.+|+
T Consensus 83 d~frvllqMAvVLtfa~~~PVvKVgRIAGQfAKPRSs~~e~~g~vtLpsYRGDiiNG~e~~~~~R~pdP~R~l~aY~qsa 162 (445)
T COG3200 83 DNFRVLLQMAVVLTFAGSRPVVKVGRIAGQFAKPRSSDHEQLGGVTLPSYRGDIINGIEFDAEAREPDPERLLKAYAQSA 162 (445)
T ss_pred HHHHHHHHHHHHHHhccCCceEEeeeecccccCCCCCchhccCCeeccccccccccCccCChhhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccc
Q 017323 235 ATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYE 314 (373)
Q Consensus 235 aTLn~lRa~~~gG~adl~~~~~W~~~f~~~s~~~~ry~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE 314 (373)
+|||+||+|++||||||+.+|+||++||++|++++||+.++++|+++|+||++||++.+ |.++.++||||||||||+||
T Consensus 163 AtlNLlRafa~gG~A~L~~vh~W~l~Fv~~sp~~~rY~~la~~I~~~l~FM~A~Gv~~~-~~lre~~~ytSHEaLLL~YE 241 (445)
T COG3200 163 ATLNLLRAFASGGLADLENVHRWNLGFVKNSPQGARYEALADRISETLAFMRACGVTND-PSLRETEFYTSHEALLLDYE 241 (445)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCC-cccccccchhhhHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999984 77899999999999999999
Q ss_pred cccccccCCCCCcccCCCCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCcccc
Q 017323 315 QALTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVFAIWDLFVI 372 (373)
Q Consensus 315 ~aLtR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGPs~tp~~~ 372 (373)
+||||.|+.+|.||+|||||+||||||||+|||||||+|||.|||||||||+++||++
T Consensus 242 eam~R~ds~s~~~Yd~SaHmlWIGeRTRq~D~AHVe~~rgv~NPig~K~GP~~~~d~l 299 (445)
T COG3200 242 EAMLRLDSTSGQWYDTSAHMLWIGERTRQPDGAHVEFLRGVKNPIGVKIGPSMTPDEL 299 (445)
T ss_pred HHHhhhccCCCceeccccceeeecccccCCChhHHHHHHhcCCccccccCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999975
No 5
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=74.67 E-value=1.5 Score=42.81 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=34.6
Q ss_pred CCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCcccc
Q 017323 332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKVFAIWDLFVI 372 (373)
Q Consensus 332 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGPs~tp~~~ 372 (373)
.-++|||-||=+ +-.|.+.+.+..-||++|=|..++++++
T Consensus 108 vd~lqIgAr~~~-n~~ll~~as~~~~pV~~K~g~~~ai~~~ 147 (270)
T PF00793_consen 108 VDWLQIGARLME-NQDLLEAASGTGKPVGFKNGTFAAIDEW 147 (270)
T ss_dssp ESEEEE-GGGTT-CHHHHHHHHCTSSEEEEEE-TTSHGGGH
T ss_pred CcEEEECcchhc-CHHHHHHhccCCCeEEeccCCccCHHHH
Confidence 349999999877 7999999999999999999999998876
No 6
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=66.43 E-value=3.3 Score=42.38 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=35.3
Q ss_pred CCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCccc
Q 017323 332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKVFAIWDLFV 371 (373)
Q Consensus 332 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGPs~tp~~ 371 (373)
--|+|||-||-+ +-.|.+.++|+.-|||+|=|-+.+.++
T Consensus 157 vs~~~IGARt~e-sq~hr~~asg~~~PVg~Kng~~g~i~~ 195 (349)
T PRK09261 157 ISWGAIGARTTE-SQVHRELASGLSCPVGFKNGTDGNIKV 195 (349)
T ss_pred cceeeeccchhc-CHHHHHHhcCCCCeeEecCCCCCCHHH
Confidence 459999999998 799999999999999999998887665
No 7
>TIGR01309 L30P_arch 50S ribosomal protein L30P, archaeal. This model represents the archaeal ribosomal protein similar to longer (~ 250 residue) eukaryotic 60S ribosomal protein L7 and to the much shorter (~ 60 residue) bacterial 50S ribosomal protein L30. Protein naming follows the SwissProt designation as L30P, while the gene symbol rpmD follows TIGR usage.
Probab=58.80 E-value=7.2 Score=35.58 Aligned_cols=109 Identities=23% Similarity=0.407 Sum_probs=72.3
Q ss_pred ccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHH--HHHHHHHHHHhCCCeeEEecCCccchhhccChhhHHHHHHH--HH
Q 017323 86 KALQLPEYPDKAQLETVLKTLEDFPPLVFAGEA--RSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRV--LL 161 (373)
Q Consensus 86 pa~QqP~ypD~~~L~~V~~~L~~lPPLV~a~Ei--~~Lr~~LA~vA~G~aFlLQGGDCAEsF~e~~~~~I~~k~~~--Ll 161 (373)
..-|....+|.++ +...|+...|+|+.+|+ +.+++.+-. +|+ + .||. ..|.+.|.+++.+ +.
T Consensus 27 ri~~~V~v~~tp~---~~gML~kV~~yV~~ge~~~~tv~~Li~k--RG~--~-~g~~------~ltd~~i~e~~g~~~ie 92 (152)
T TIGR01309 27 RVNHCVLYPETPT---YLGMLQKVKDYVTWGEIDEDTLELLIRK--RGR--L-VGGD------KVTDEYVKEVTGYESVD 92 (152)
T ss_pred cCCCEEEEeCCHH---HHHHHHHhHhheeEecCCHHHHHHHHHH--hcc--c-cCCC------cCCHHHHHHHcCCccHH
Confidence 3445566666644 55666777899999985 556666655 554 2 3653 4666788887665 67
Q ss_pred HHHHHHhhcC-------CCCeEeeeccccCCCCCCCCcccccCCeeccCccCcccCC
Q 017323 162 QMGVVLMFGG-------QMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNING 211 (373)
Q Consensus 162 qMa~vL~~g~-------~~PVVkVGRiAGQfAKPRS~~~E~~dGv~LPsYRGD~VN~ 211 (373)
.|+..|..+. =+|+.++-=--|-|.+-+..++ .+|-.+- ||||-||.
T Consensus 93 dl~~~i~~~~~~f~~~~~~~~FrL~pPr~G~~~~~k~~~--~~gG~~G-~r~~~In~ 146 (152)
T TIGR01309 93 ELAKALVEGEIKLSEAGLKPVFRLHPPRKGFKGGIKTPY--RDGGELG-YRGEKINE 146 (152)
T ss_pred HHHHHHHcCCCCccccCccCceeCCCCCccccccccccc--ccCCCCc-ccHHHHHH
Confidence 7777665543 4677777666788875555666 3455554 99999995
No 8
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=57.31 E-value=5.9 Score=40.73 Aligned_cols=39 Identities=28% Similarity=0.299 Sum_probs=34.5
Q ss_pred CCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCccc
Q 017323 332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKVFAIWDLFV 371 (373)
Q Consensus 332 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGPs~tp~~ 371 (373)
-.|.+||-||-+ +--|.|+++|+.-|||+|=|-+.+.++
T Consensus 158 vs~~aIGARt~e-sq~hre~aSgl~~PVgfKngt~g~i~~ 196 (353)
T PRK12755 158 ISWGAIGARTTE-SQTHREMASGLSMPVGFKNGTDGSLKV 196 (353)
T ss_pred hhheeeccchhc-CHHHHHHhcCCCCeeEecCCCCCCHHH
Confidence 447889999988 799999999999999999998877654
No 9
>PRK13296 tRNA CCA-pyrophosphorylase; Provisional
Probab=57.19 E-value=18 Score=37.32 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=38.0
Q ss_pred CCCChHHHHHHHHHHHH-----------HHHHHHhhhc-CCcccccccccchhhhhccCchhhHHHHHHHHHHHHHhHHH
Q 017323 219 RVPDPERLIRAYCQSAA-----------TLNLLRSFAT-GGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMA 286 (373)
Q Consensus 219 R~PDP~RLl~AY~~Saa-----------TLn~lRa~~~-gG~adl~~~~~W~~~f~~~s~~~~ry~~~~~~i~~al~Fm~ 286 (373)
=.-||-|||+|+..++. |+++|+.... +.+..+..-.-| .+...+...-...+++|.
T Consensus 128 F~EDPLRILRa~RFaarL~~~gF~ie~eT~~~i~~~~~~~~L~~vs~ERI~-----------~El~kiL~~p~~~l~~L~ 196 (360)
T PRK13296 128 FIEDPLRVVRLARFKAQLSNFNFSIAQEMLALIKELVKTGELNHLTRERLH-----------IEFVKALNNPKIFFTTLK 196 (360)
T ss_pred cccCHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHhhhhhhhhcCCHHHHH-----------HHHHHHHhChHHHHHHHH
Confidence 35799999999999884 8888887542 323322221111 122222223345677888
Q ss_pred HhcCCCC
Q 017323 287 AAGLTLD 293 (373)
Q Consensus 287 a~G~~~~ 293 (373)
.+|+-..
T Consensus 197 ~~glL~~ 203 (360)
T PRK13296 197 ELEALKI 203 (360)
T ss_pred HcCCHHH
Confidence 8887553
No 10
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=52.87 E-value=23 Score=35.77 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=38.3
Q ss_pred HhCCCeeEEecCCcc-chhhccChhhHHHHHHHHHHHHHHHhhc---CCCCeEeeeccccCCCC-CCCCcccccCCeecc
Q 017323 128 AAMGNAFLLQGGDCA-ESFKEFNANNIRDTFRVLLQMGVVLMFG---GQMPIIKVGRMAGQFAK-PRSDPFEVKNGVKLP 202 (373)
Q Consensus 128 vA~G~aFlLQGGDCA-EsF~e~~~~~I~~k~~~LlqMa~vL~~g---~~~PVVkVGRiAGQfAK-PRS~~~E~~dGv~LP 202 (373)
...++-|+|=+|=|+ |+- ..++.+|..+... .+.++|+ -|=|-| |||++.
T Consensus 11 ~~~~~~~~lIAGPC~iEs~------------e~~~~~A~~lk~~~~~~g~~~i~----kgsfkKApRTSp~--------- 65 (290)
T PLN03033 11 LKAAEPFFLLAGPNVIESE------------EHILRMAKHIKDISTKLGLPLVF----KSSFDKANRTSSK--------- 65 (290)
T ss_pred cCCCCCeEEEecCChhcCH------------HHHHHHHHHHHHHHHhCCCcEEE----EeeccCCCCCCCC---------
Confidence 345677889999886 332 2245555555543 4788998 889999 999965
Q ss_pred CccC
Q 017323 203 SYKG 206 (373)
Q Consensus 203 sYRG 206 (373)
||||
T Consensus 66 sFrG 69 (290)
T PLN03033 66 SFRG 69 (290)
T ss_pred CCCC
Confidence 8888
No 11
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=52.24 E-value=46 Score=34.05 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=33.5
Q ss_pred CCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCcccc
Q 017323 332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKVFAIWDLFVI 372 (373)
Q Consensus 332 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGPs~tp~~~ 372 (373)
.-++|||=|+=+ +-..++++++..-||-+|=|-..+++||
T Consensus 202 vd~lkI~s~~~~-n~~LL~~~a~~gkPVilk~G~~~t~~e~ 241 (360)
T PRK12595 202 VDVIQIGARNMQ-NFELLKAAGRVNKPVLLKRGLSATIEEF 241 (360)
T ss_pred CCeEEECccccc-CHHHHHHHHccCCcEEEeCCCCCCHHHH
Confidence 449999998755 4578888888899999999998888876
No 12
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=47.62 E-value=7.1 Score=35.30 Aligned_cols=41 Identities=34% Similarity=0.694 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccccccc
Q 017323 268 GDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALTRR 320 (373)
Q Consensus 268 ~~ry~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~aLtR~ 320 (373)
.+.|..+..+||++|.||.. ||..... |.-++-|.+.|||.
T Consensus 94 ~~~F~~~L~~LD~cl~Fl~~------h~~fkea------~~Y~~rf~q~ltRA 134 (157)
T PF04136_consen 94 SDSFKPMLSRLDECLEFLEE------HPNFKEA------EVYLIRFRQCLTRA 134 (157)
T ss_pred chHHHHHHHHHHHHHHHHHH------hhhhhhh------HHHHHHHHHHHHHH
Confidence 45789999999999999998 4654444 55566999999985
No 13
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=47.21 E-value=11 Score=38.70 Aligned_cols=37 Identities=30% Similarity=0.348 Sum_probs=32.1
Q ss_pred ceeeccccCCCCchhHHHhhhccCcceeeeCCCCCccc
Q 017323 334 MLWVGERTRQLDGAHVEFLRGIANPLGIKVFAIWDLFV 371 (373)
Q Consensus 334 ~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGPs~tp~~ 371 (373)
|.+||-||-+ .--|-|+.+|+.-|||.|=|.+.+.++
T Consensus 154 w~aIGARt~e-sq~hRelaSgl~~PVgfKngt~g~i~~ 190 (344)
T TIGR00034 154 WGAIGARTTE-SQVHRELASGLSCPVGFKNGTDGNLQV 190 (344)
T ss_pred hccccCcccc-CHHHHHHHhCCCCceEecCCCCCCHHH
Confidence 5699999977 469999999999999999998877654
No 14
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=40.78 E-value=13 Score=38.33 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=32.6
Q ss_pred ceeeccccCCCCchhHHHhhhccCcceeeeCCCCCccc
Q 017323 334 MLWVGERTRQLDGAHVEFLRGIANPLGIKVFAIWDLFV 371 (373)
Q Consensus 334 ~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGPs~tp~~ 371 (373)
|.+||-||-+ .--|-++.+|+.=|||+|=|...+.++
T Consensus 159 w~aIGARt~e-sq~hrelaSgls~PVgfKngt~g~i~~ 195 (356)
T PRK12822 159 WGAIGARTTE-SQVHRQLASALPCPVGFKNGTDGNIRI 195 (356)
T ss_pred hhhhccchhc-CHHHHHHHhCCCCceEecCCCCCCHHH
Confidence 5699999977 678999999999999999999887654
No 15
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=32.87 E-value=65 Score=36.43 Aligned_cols=64 Identities=22% Similarity=0.275 Sum_probs=37.6
Q ss_pred CCChHHHHHHHHHHHH---------HHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHHH---HHHHHhHHHH
Q 017323 220 VPDPERLIRAYCQSAA---------TLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHR---VDEALGFMAA 287 (373)
Q Consensus 220 ~PDP~RLl~AY~~Saa---------TLn~lRa~~~gG~adl~~~~~W~~~f~~~s~~~~ry~~~~~~---i~~al~Fm~a 287 (373)
.-||.|||+++..++. |++.||.-.. ..+..+...+...+++.++... ...+|+.|..
T Consensus 340 ~~dp~riLr~fr~~a~~~~~~i~~~t~~~i~~~~~----------~~~~~l~~~~~eR~ef~kiL~~~~~~~~~l~~M~~ 409 (854)
T PRK01759 340 EQQPESILDLFFYLTQYPQAEIHSTTLRQLRLALE----------QLQQPLCELPAARERFLRLFNQPNAIKRALVPMHQ 409 (854)
T ss_pred hhCHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHH----------hccchhccCHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 5699999999986654 6676664211 1122222333334455554433 3467889999
Q ss_pred hcCCCC
Q 017323 288 AGLTLD 293 (373)
Q Consensus 288 ~G~~~~ 293 (373)
+|+-..
T Consensus 410 ~GvL~~ 415 (854)
T PRK01759 410 YGVLTA 415 (854)
T ss_pred hCCHHH
Confidence 887653
No 16
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=32.61 E-value=1.1e+02 Score=23.37 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=41.0
Q ss_pred hCCCeeEEecCCccchhhccChhhHHHHHHHHHHHHHHHhhcCCCCeEe----eeccccC
Q 017323 129 AMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIK----VGRMAGQ 184 (373)
Q Consensus 129 A~G~aFlLQGGDCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVk----VGRiAGQ 184 (373)
..|...++- =...++|.+++.+.+.+-++++.++...|....+.+-+. -|-.+||
T Consensus 17 ~~gh~lIip-k~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~ 75 (86)
T cd00468 17 APGHVLVCP-KRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQ 75 (86)
T ss_pred CCCcEEEeC-chhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCC
Confidence 456666666 677889999999999999999999999986554444344 3556776
No 17
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=31.30 E-value=25 Score=36.25 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=29.0
Q ss_pred eeccccCCCCchhHHHhhhccCcceeeeCCCCCcc
Q 017323 336 WVGERTRQLDGAHVEFLRGIANPLGIKVFAIWDLF 370 (373)
Q Consensus 336 WIGeRTRqlDgAHVeflrgI~NPIGvKvGPs~tp~ 370 (373)
+||-||-+ .--|-|+.+|+.-|||+|=|...+.+
T Consensus 160 aIGARt~e-sq~hre~ASgls~PVgfKN~t~g~i~ 193 (348)
T PRK12756 160 AIGARTTE-SQIHREMASALSCPVGFKNGTDGNTR 193 (348)
T ss_pred hhcccccc-CHHHHHHHhcCCCceEecCCCCCCHH
Confidence 69999877 56699999999999999988776543
No 18
>PRK06049 rpl30p 50S ribosomal protein L30P; Reviewed
Probab=31.27 E-value=60 Score=29.77 Aligned_cols=109 Identities=23% Similarity=0.401 Sum_probs=67.6
Q ss_pred CccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHH--HHHHHHHHHHhCCCeeEEecCCccchhhccChhhHHHHHHH--H
Q 017323 85 KKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEA--RSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRV--L 160 (373)
Q Consensus 85 ~pa~QqP~ypD~~~L~~V~~~L~~lPPLV~a~Ei--~~Lr~~LA~vA~G~aFlLQGGDCAEsF~e~~~~~I~~k~~~--L 160 (373)
...-|-...+|.++ +...|+..-|+|+.+|+ ..+++.|.. +|+ +-|+. -.|.+.|.+++.+ +
T Consensus 28 ~ki~~~V~v~~tp~---~~GML~kV~~~V~~ge~~~~tv~~Li~k--RG~---~~g~~------~ltd~~i~e~~g~~~i 93 (154)
T PRK06049 28 HRVNHCVLVPETPS---YKGMLQKVKDYVTWGEIDADTLAELLRK--RGR---LEGNK------KLTDEYVKENTGYDSI 93 (154)
T ss_pred CcCCCEEEEeCCHH---HHHHHHhhhceeEEeeCchHHHHHHHHH--hCc---ccCCC------CCCHHHHHHhcCCccH
Confidence 34445666666644 55667777899999984 456666665 554 33432 5566666665555 5
Q ss_pred HHHHHHHhhcC--------CCCeEeeeccccCCCCCCCCcccccCCeeccCccCcccCC
Q 017323 161 LQMGVVLMFGG--------QMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNING 211 (373)
Q Consensus 161 lqMa~vL~~g~--------~~PVVkVGRiAGQfAKPRS~~~E~~dGv~LPsYRGD~VN~ 211 (373)
..|+..|..+. =+|+.++-=--|-|.+ ...++ .+|-.+- ||||.||.
T Consensus 94 edl~~~i~~~~~~fk~~~~~~~~FrL~pPr~G~~~-~k~~~--~~gG~~G-~r~~~In~ 148 (154)
T PRK06049 94 EELAEALVEGEIKLKDLPGLKPVFRLHPPRGGFGG-IKRPF--KEGGELG-YRGEKINE 148 (154)
T ss_pred HHHHHHHHhCCCCHHHhhcccCceecCCcchhhhh-ccccc--ccCCCCC-ccHHHHHH
Confidence 66666664433 3567776665677843 33444 3455565 99999996
No 19
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=30.46 E-value=32 Score=28.40 Aligned_cols=18 Identities=39% Similarity=0.728 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhcCCCCcC
Q 017323 97 AQLETVLKTLEDFPPLVF 114 (373)
Q Consensus 97 ~~L~~V~~~L~~lPPLV~ 114 (373)
.+|.+|.+.|+.|||++.
T Consensus 59 SQLKRiQRdlrGLPP~~~ 76 (76)
T PF08203_consen 59 SQLKRIQRDLRGLPPLVS 76 (76)
T ss_dssp HHHHHHHHHHHHS-----
T ss_pred HHHHHHHHhhCCCCCCCC
Confidence 469999999999999974
No 20
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=30.36 E-value=33 Score=33.61 Aligned_cols=39 Identities=21% Similarity=0.095 Sum_probs=34.4
Q ss_pred CceeeccccCCCCchhHHHhhhccCcceeeeCCCCCcccc
Q 017323 333 HMLWVGERTRQLDGAHVEFLRGIANPLGIKVFAIWDLFVI 372 (373)
Q Consensus 333 H~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGPs~tp~~~ 372 (373)
-++|||=|+=+ +-.+++.+++..-||++|=|-..+++|+
T Consensus 112 d~~kIga~~~~-n~~LL~~~a~~gkPV~lk~G~~~s~~e~ 150 (266)
T PRK13398 112 DMLQIGSRNMQ-NFELLKEVGKTKKPILLKRGMSATLEEW 150 (266)
T ss_pred CEEEECccccc-CHHHHHHHhcCCCcEEEeCCCCCCHHHH
Confidence 49999999866 5679999999999999999999888875
No 21
>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated
Probab=30.33 E-value=32 Score=36.79 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=29.5
Q ss_pred chhhccChhhHH-HHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeeccCccCc
Q 017323 143 ESFKEFNANNIR-DTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGD 207 (373)
Q Consensus 143 EsF~e~~~~~I~-~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~dGv~LPsYRGD 207 (373)
|....++++.|| .|+++|..|-.+=......-|| =|||.+= .++|..+|.||-+
T Consensus 258 E~P~~~~~~~ir~eK~kvL~sir~~~~~~~~~~~V-----rGQY~~g------~~~g~~~~gY~~e 312 (495)
T PRK05722 258 EPPASLDADSIRDEKVKVLRALRPITPEDVKENTV-----RGQYTAG------WIGGKPVPGYREE 312 (495)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCChhhhhccee-----eccccCC------CCCCCCCCCccCC
Confidence 344445566664 3666665543221111112233 5999642 2479999999975
No 22
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=29.59 E-value=93 Score=31.39 Aligned_cols=51 Identities=29% Similarity=0.374 Sum_probs=32.6
Q ss_pred CCeeEEecCCcc-chhhccChhhHHHHHHHHHHHHHHHh---hcCCCCeEeeeccccCCCC-CCCCcccccCCeeccCcc
Q 017323 131 GNAFLLQGGDCA-ESFKEFNANNIRDTFRVLLQMGVVLM---FGGQMPIIKVGRMAGQFAK-PRSDPFEVKNGVKLPSYK 205 (373)
Q Consensus 131 G~aFlLQGGDCA-EsF~e~~~~~I~~k~~~LlqMa~vL~---~g~~~PVVkVGRiAGQfAK-PRS~~~E~~dGv~LPsYR 205 (373)
++-|+|-+|=|+ |+- ..++++|..|. ...+.++|. -|-|-| ||||+. |||
T Consensus 14 ~~~~~~iaGPCsvEs~------------e~~~~iA~~lk~i~~~~g~~~~f----K~sf~KapRTSp~---------sFq 68 (281)
T PRK12457 14 DLPFVLFGGINVLESL------------DFTLDVCGEYVEVTRKLGIPFVF----KASFDKANRSSIH---------SYR 68 (281)
T ss_pred CCceEEEecCCcccCH------------HHHHHHHHHHHHHHHHCCCcEEe----eeccCCCCCCCCC---------CCC
Confidence 345888888885 332 22344444443 345677766 678989 599975 788
Q ss_pred C
Q 017323 206 G 206 (373)
Q Consensus 206 G 206 (373)
|
T Consensus 69 G 69 (281)
T PRK12457 69 G 69 (281)
T ss_pred C
Confidence 8
No 23
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=29.56 E-value=1.4e+02 Score=31.41 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=21.4
Q ss_pred CCCChHHHHHHHHHHHH-----------HHHHHHhhh
Q 017323 219 RVPDPERLIRAYCQSAA-----------TLNLLRSFA 244 (373)
Q Consensus 219 R~PDP~RLl~AY~~Saa-----------TLn~lRa~~ 244 (373)
=.-||-|||+|+..++. |+.+|+...
T Consensus 128 F~EDPLRiLRa~RFaar~~~lgF~i~~~T~~~i~~~~ 164 (417)
T PRK13298 128 FIEDPLRVLRVARFAALLVHLGFKIAKETMILMCIMV 164 (417)
T ss_pred cccCHHHHHHHHHHHHHhccCCCccCHHHHHHHHHHh
Confidence 36799999999998874 888888755
No 24
>TIGR01942 pcnB poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).
Probab=29.02 E-value=1.6e+02 Score=31.07 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=37.6
Q ss_pred CCChHHHHHHHHHHHH--------HHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHHH-----HHHHHhHHH
Q 017323 220 VPDPERLIRAYCQSAA--------TLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHR-----VDEALGFMA 286 (373)
Q Consensus 220 ~PDP~RLl~AY~~Saa--------TLn~lRa~~~gG~adl~~~~~W~~~f~~~s~~~~ry~~~~~~-----i~~al~Fm~ 286 (373)
.-||-|||+|...|+. |.+.|+.... .+.+.+..+-+.++.+- -..++.+|.
T Consensus 165 ~EDPlRiLRAvRFaa~LgF~Ie~~T~~~I~~~a~---------------~L~~vs~eRI~~El~Kll~~~~~~~~l~~L~ 229 (410)
T TIGR01942 165 QEDPVRMLRALRFSVKLEFTIDESTARPIRESAP---------------LLKGIPPARLFEEILKLLFSGRSAALFRMLC 229 (410)
T ss_pred cccHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHH---------------HHhcCCHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5699999999999986 8888887542 12223333334444332 236777888
Q ss_pred HhcCCC
Q 017323 287 AAGLTL 292 (373)
Q Consensus 287 a~G~~~ 292 (373)
.+|+-.
T Consensus 230 ~~gll~ 235 (410)
T TIGR01942 230 GYQLLE 235 (410)
T ss_pred HcCCHH
Confidence 888754
No 25
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=26.92 E-value=1.4e+02 Score=31.28 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=17.9
Q ss_pred CCChHHHHHHHHHHHH--------HHHHHHh
Q 017323 220 VPDPERLIRAYCQSAA--------TLNLLRS 242 (373)
Q Consensus 220 ~PDP~RLl~AY~~Saa--------TLn~lRa 242 (373)
.-||-|||+|+..++. |++.|+.
T Consensus 167 ~eDPlRiLRa~Rfaa~lgf~i~~~T~~~i~~ 197 (466)
T TIGR02692 167 GDDPLRMLRAARFVSQLGFEVAPRVRAAMTE 197 (466)
T ss_pred hhChHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 4589999999998764 5666665
No 26
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=26.47 E-value=1.1e+02 Score=34.46 Aligned_cols=64 Identities=25% Similarity=0.285 Sum_probs=38.8
Q ss_pred CCChHHHHHHHHHHHH--------HHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHH---HHHHHHhHHHHh
Q 017323 220 VPDPERLIRAYCQSAA--------TLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAH---RVDEALGFMAAA 288 (373)
Q Consensus 220 ~PDP~RLl~AY~~Saa--------TLn~lRa~~~gG~adl~~~~~W~~~f~~~s~~~~ry~~~~~---~i~~al~Fm~a~ 288 (373)
.-||.|||+++..++. |++.|+.... .+. ..+.......+++.++.. ....+|+.|..+
T Consensus 333 ~eDPlriLR~~rfaa~~~~~i~~~T~~~i~~~~~----~l~------~~~~~~er~~~ef~~iL~~~~~~~~~l~~m~~~ 402 (850)
T TIGR01693 333 ERDPALLLRLFAIAAQRGLPIHPAALRQLTASLP----LLP------TPLREDPEARELFLELLTSGNGTVRALRAMNRA 402 (850)
T ss_pred hhCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcC------chhhcCHHHHHHHHHHHcCCCchHHHHHHHHHh
Confidence 5699999999988874 6777776332 011 111122233444555443 345679999999
Q ss_pred cCCCC
Q 017323 289 GLTLD 293 (373)
Q Consensus 289 G~~~~ 293 (373)
|+-..
T Consensus 403 gvL~~ 407 (850)
T TIGR01693 403 GVLGR 407 (850)
T ss_pred CCHHH
Confidence 88553
No 27
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=26.06 E-value=1.1e+02 Score=27.05 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=45.8
Q ss_pred CccchhhccChhhHHHHHHHHHHHHHHHhhcCCCC----eEeeeccccCCCCCCCCcccccCCeeccCccCccc
Q 017323 140 DCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMP----IIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNI 209 (373)
Q Consensus 140 DCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~P----VVkVGRiAGQfAKPRS~~~E~~dGv~LPsYRGD~V 209 (373)
.-...|.+.+++...+-+.++..++..|....+-. ++.+|+.|||.-. -+-=.-+|-|+||.-
T Consensus 44 ~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~ni~~N~g~~agq~V~-------HlH~HvIPr~~~d~~ 110 (138)
T COG0537 44 RHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYNIGINNGKAAGQEVF-------HLHIHIIPRYKGDDN 110 (138)
T ss_pred cchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEecCcccCcCcc-------eEEEEEcCCcCCCCC
Confidence 44577889999999999999999998887665533 7788999998532 111245777887643
No 28
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=25.81 E-value=1.7e+02 Score=30.44 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=20.4
Q ss_pred CCChHHHHHHHHHHHH-----------HHHHHHhhhc
Q 017323 220 VPDPERLIRAYCQSAA-----------TLNLLRSFAT 245 (373)
Q Consensus 220 ~PDP~RLl~AY~~Saa-----------TLn~lRa~~~ 245 (373)
.-||-|||+++..++. |+++|+....
T Consensus 129 ~eDPlRiLRa~RFaarl~~lgf~i~~~T~~~i~~~~~ 165 (409)
T PRK10885 129 AEDPLRVLRVARFAARFAHLGFRIAPETLALMREMVA 165 (409)
T ss_pred hhCHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHhhh
Confidence 5699999999988765 6777776554
No 29
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=25.51 E-value=44 Score=34.00 Aligned_cols=39 Identities=15% Similarity=0.058 Sum_probs=35.5
Q ss_pred CceeeccccCCCCchhHHHhhhccCcceeeeCCCCCcccc
Q 017323 333 HMLWVGERTRQLDGAHVEFLRGIANPLGIKVFAIWDLFVI 372 (373)
Q Consensus 333 H~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGPs~tp~~~ 372 (373)
-++|||=|+=| +-.|++.+.+..-||.+|=|.+++.+|+
T Consensus 178 d~lqIgAr~~~-N~~LL~~va~~~kPViLk~G~~~ti~E~ 216 (335)
T PRK08673 178 DILQIGARNMQ-NFDLLKEVGKTNKPVLLKRGMSATIEEW 216 (335)
T ss_pred CeEEECccccc-CHHHHHHHHcCCCcEEEeCCCCCCHHHH
Confidence 49999999877 7889999999999999999999998875
No 30
>COG1342 Predicted DNA-binding proteins [General function prediction only]
Probab=23.50 E-value=90 Score=27.14 Aligned_cols=29 Identities=28% Similarity=0.509 Sum_probs=21.3
Q ss_pred cCHHHHHHHHHHHHHH-hCCCeeEEecCCc
Q 017323 113 VFAGEARSLEERLAEA-AMGNAFLLQGGDC 141 (373)
Q Consensus 113 V~a~Ei~~Lr~~LA~v-A~G~aFlLQGGDC 141 (373)
+++.-+.+-|...|++ -+|++.++||||-
T Consensus 65 Tfwr~l~sAR~KvA~aLveGkaI~i~Ggey 94 (99)
T COG1342 65 TFWRLLTSARKKVADALVEGKAIIIKGGEY 94 (99)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEecCCce
Confidence 3455566666666654 5899999999995
No 31
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=23.33 E-value=1.3e+02 Score=34.39 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=37.8
Q ss_pred CCChHHHHHHHHHHH----------HHHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHHH---HHHHHhHHH
Q 017323 220 VPDPERLIRAYCQSA----------ATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHR---VDEALGFMA 286 (373)
Q Consensus 220 ~PDP~RLl~AY~~Sa----------aTLn~lRa~~~gG~adl~~~~~W~~~f~~~s~~~~ry~~~~~~---i~~al~Fm~ 286 (373)
.-||.|||+++..++ .|++.||.... .. +..|.......+.+.++... +..+|+.|.
T Consensus 363 ~~dP~riLr~f~~~a~~~~i~~i~~~t~~~i~~~~~-------~i---~~~~~~~~~~~~~f~~iL~~~~~~~~~l~~M~ 432 (895)
T PRK00275 363 KRTPFALLEIFVLMAQHPEIKGVRADTIRLLREHRH-------LI---DDAFRNDIRNTSLFIELFKCPIGIHRNLRRMN 432 (895)
T ss_pred hcCHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHH-------hc---CchhccCHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 468999999998874 45566664221 01 11112222334455555443 556799999
Q ss_pred HhcCCCC
Q 017323 287 AAGLTLD 293 (373)
Q Consensus 287 a~G~~~~ 293 (373)
.+|+-..
T Consensus 433 ~~GvL~~ 439 (895)
T PRK00275 433 RYGILGR 439 (895)
T ss_pred HcCCHHH
Confidence 9988654
No 32
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=22.19 E-value=96 Score=24.82 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=35.8
Q ss_pred ccchhhccChhhHHHHHHHHHHHHHHHhhcCCC----CeEeeeccccCC
Q 017323 141 CAESFKEFNANNIRDTFRVLLQMGVVLMFGGQM----PIIKVGRMAGQF 185 (373)
Q Consensus 141 CAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~----PVVkVGRiAGQf 185 (373)
..++|.|++++...+-+.++..++..|....+. .++..|..+||-
T Consensus 36 H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~gq~ 84 (98)
T PF01230_consen 36 HVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAGQS 84 (98)
T ss_dssp TGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGTSS
T ss_pred cccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhcCc
Confidence 567899999999999999999999888874332 456677788884
No 33
>PF01785 Closter_coat: Closterovirus coat protein; InterPro: IPR002679 This family consist of coat proteins from closterovirus, which belong to the Closteroviridae, which have a positive strand ssRNA genome with no DNA stage during replication. The viral coat protein encapsulates and protects the viral genome. Both the large cp1 and smaller cp2 coat protein originate from the same primary transcript []. Members of the Closterovirus include Beet yellows virus (BYV) (Sugar beet yellows virus) and Grapevine leafroll-associated virus 7.; GO: 0044423 virion part
Probab=22.16 E-value=3.3e+02 Score=25.15 Aligned_cols=107 Identities=20% Similarity=0.191 Sum_probs=73.6
Q ss_pred CCCCcCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhccChhhHHHHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCC
Q 017323 109 FPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKP 188 (373)
Q Consensus 109 lPPLV~a~Ei~~Lr~~LA~vA~G~aFlLQGGDCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKP 188 (373)
-|-.++.+|++.+.+.+.+.-..+- +.+.+++..-+-.++||+...+ +.+.+.. =
T Consensus 9 ~~~~ls~~~~~~~~~~~~~~~~~~~-------------~~~~k~~~~~~~~~~q~~~~~S--TS~k~~~----------~ 63 (188)
T PF01785_consen 9 DPDVLSEEDLKKLSEKLKKFLKEKL-------------GVTDKDFIAFFVMLLQRAATQS--TSKKNSY----------N 63 (188)
T ss_pred CccccCHHHHHHHHHHHHHHHHhhc-------------CCCHHHHHHHHHHHHHHHHHhC--CCccccc----------C
Confidence 3456778888888888877655443 6778888888888889887766 4333322 2
Q ss_pred CCCcccccCCeeccCccCcccCCCCCC-CCCCCCChHHHHHHHHHHHHHHHHHHh
Q 017323 189 RSDPFEVKNGVKLPSYKGDNINGDAFD-EKSRVPDPERLIRAYCQSAATLNLLRS 242 (373)
Q Consensus 189 RS~~~E~~dGv~LPsYRGD~VN~~~f~-~~aR~PDP~RLl~AY~~SaaTLn~lRa 242 (373)
.+..+ ++||.+.-.+-+|++|-..-. .....|+|-|..-.++. ...+.++|.
T Consensus 64 ~~~~~-~~~g~~~~~~~~~~~~~i~~~~~~~~~~N~lR~f~R~~~-~~~~~l~~~ 116 (188)
T PF01785_consen 64 LSNTY-TIDGKEYKVKDADVFNFIDSSFSSPGYPNPLRQFMRSFE-AEILDLLRS 116 (188)
T ss_pred CCeEE-EEcCEEEEEEHHHHHHHHHhccccCCCCcHHHHHHHHhH-HHHHHHHHh
Confidence 34444 778999888888876643222 24689999998777654 467777775
No 34
>PRK13299 tRNA CCA-pyrophosphorylase; Provisional
Probab=21.82 E-value=2e+02 Score=29.64 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=36.3
Q ss_pred CCChHHHHHHHHHHHH--------HHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHHHH-----HHHHhHHH
Q 017323 220 VPDPERLIRAYCQSAA--------TLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRV-----DEALGFMA 286 (373)
Q Consensus 220 ~PDP~RLl~AY~~Saa--------TLn~lRa~~~gG~adl~~~~~W~~~f~~~s~~~~ry~~~~~~i-----~~al~Fm~ 286 (373)
.-||-|||+|+..++. |+..|+... ......+..+-+.++..-+ ..++..|.
T Consensus 153 ~eDplRiLRa~Rfaa~l~f~i~~~t~~~i~~~~---------------~~l~~vs~eRI~~El~kll~~~~~~~~l~~l~ 217 (394)
T PRK13299 153 QEDALRMMRAVRFASQLGFDLETETFEAMKTQA---------------PLLEKISVERIFVEFEKLLLGPFWRKGLKLLI 217 (394)
T ss_pred ccCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH---------------HHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5699999999998873 666666532 1122333333344443322 35678888
Q ss_pred HhcCCCCCC
Q 017323 287 AAGLTLDHP 295 (373)
Q Consensus 287 a~G~~~~~~ 295 (373)
.+|+-...|
T Consensus 218 ~~gll~~~p 226 (394)
T PRK13299 218 ETGLYNYLP 226 (394)
T ss_pred HCChHHhCc
Confidence 888765433
No 35
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=21.37 E-value=1.1e+02 Score=30.04 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeeccCccC
Q 017323 158 RVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKG 206 (373)
Q Consensus 158 ~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~dGv~LPsYRG 206 (373)
..++++|.. ....+.++|+ +|=|. |||++. ||||
T Consensus 29 e~~~~~a~~-~~~~g~~~~r----~g~~k-pRts~~---------sf~G 62 (250)
T PRK13397 29 DHIRLAASS-AKKLGYNYFR----GGAYK-PRTSAA---------SFQG 62 (250)
T ss_pred HHHHHHHHH-HHHcCCCEEE----ecccC-CCCCCc---------ccCC
No 36
>PRK13297 tRNA CCA-pyrophosphorylase; Provisional
Probab=21.34 E-value=1.7e+02 Score=30.50 Aligned_cols=59 Identities=25% Similarity=0.361 Sum_probs=35.7
Q ss_pred CCChHHHHHHHHHHHH---------HHHHHHhhhc-CCcccccccccchhhhhccCchhhHHHHHHHHH-----HHHHhH
Q 017323 220 VPDPERLIRAYCQSAA---------TLNLLRSFAT-GGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRV-----DEALGF 284 (373)
Q Consensus 220 ~PDP~RLl~AY~~Saa---------TLn~lRa~~~-gG~adl~~~~~W~~~f~~~s~~~~ry~~~~~~i-----~~al~F 284 (373)
.=||-|||+|+..++. |+++++.... |.+..+ +..+-++++.+-+ ..++..
T Consensus 140 ~EDPLRILRa~RFaarlg~F~i~~eT~~~~~~~~~~~~l~~l--------------~~ERI~~El~k~L~~~~p~~~l~~ 205 (364)
T PRK13297 140 AEDPVRILRLGRFAARFGDFSIAPETMQLCRRMVEAGEADAL--------------VPERVWKEVSRGLMAQAPSRMLDV 205 (364)
T ss_pred ccCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhhcccccC--------------CHHHHHHHHHHHHcCCCHHHHHHH
Confidence 5699999999988774 6677776543 222222 1222244444333 247788
Q ss_pred HHHhcCCC
Q 017323 285 MAAAGLTL 292 (373)
Q Consensus 285 m~a~G~~~ 292 (373)
|..||+-.
T Consensus 206 L~~~g~L~ 213 (364)
T PRK13297 206 LARAGALA 213 (364)
T ss_pred HHHcCCHH
Confidence 88888754
No 37
>PF05598 DUF772: Transposase domain (DUF772); InterPro: IPR008490 This presumed domain is found at the N terminus of transposase insH and other related transposases.
Probab=20.88 E-value=1.8e+02 Score=22.17 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhHHHHhcCCCC
Q 017323 271 YQELAHRVDEALGFMAAAGLTLD 293 (373)
Q Consensus 271 y~~~~~~i~~al~Fm~a~G~~~~ 293 (373)
.+++++.+.+.+.|+..||++.+
T Consensus 25 ~r~l~~~l~~~~~~r~~~g~~~~ 47 (77)
T PF05598_consen 25 DRELEERLRDNLSFRYFCGLSLE 47 (77)
T ss_pred HHHHHhhHhhhhHHHHHHhcccC
Confidence 57789999999999999997544
No 38
>PF06974 DUF1298: Protein of unknown function (DUF1298); InterPro: IPR009721 This entry represents the C terminus (approximately 170 residues) of a number of hypothetical plant proteins. O-acyltransferase WSD1 is a bifunctional wax ester synthase/diacylglycerol acyltransferase, which is involved in cuticular wax biosynthesis [].; GO: 0004144 diacylglycerol O-acyltransferase activity
Probab=20.84 E-value=62 Score=28.56 Aligned_cols=39 Identities=28% Similarity=0.471 Sum_probs=29.2
Q ss_pred CeeccCccCcccCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 017323 198 GVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAATL 237 (373)
Q Consensus 198 Gv~LPsYRGD~VN~~~f~~~aR~PDP~RLl~AY~~SaaTL 237 (373)
++++-||.|++-=+.-. ..+-.|||++|.+....+-.-|
T Consensus 112 ~itv~SY~g~l~~gi~a-d~~~vpD~~~l~~~~~~~l~eL 150 (153)
T PF06974_consen 112 NITVFSYAGKLDFGIVA-DRDAVPDPQRLADCFEEALEEL 150 (153)
T ss_pred EEEEEEeCCEEEEEEEE-ccccCCCHHHHHHHHHHHHHHH
Confidence 68999999997655322 2466899999999988764433
No 39
>PRK13473 gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=20.62 E-value=2.4e+02 Score=29.14 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=28.8
Q ss_pred CCCCcCHHHHHHHHHHHHHH-hCCCeeEEecCCcc
Q 017323 109 FPPLVFAGEARSLEERLAEA-AMGNAFLLQGGDCA 142 (373)
Q Consensus 109 lPPLV~a~Ei~~Lr~~LA~v-A~G~aFlLQGGDCA 142 (373)
+-||++....+++++.+.++ +.|.+-+|.||.+.
T Consensus 319 ~gpli~~~~~~~v~~~i~~a~~~G~a~v~~gg~~~ 353 (475)
T PRK13473 319 LGPLISAAHRDRVAGFVERAKALGHIRVVTGGEAP 353 (475)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCeEEEECCCcC
Confidence 57899999999999999875 45668899999765
No 40
>PRK03059 PII uridylyl-transferase; Provisional
Probab=20.50 E-value=1.5e+02 Score=33.63 Aligned_cols=64 Identities=16% Similarity=0.227 Sum_probs=37.0
Q ss_pred CCChHHHHHHHHHHHH----------HHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHHH---HHHHHhHHH
Q 017323 220 VPDPERLIRAYCQSAA----------TLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHR---VDEALGFMA 286 (373)
Q Consensus 220 ~PDP~RLl~AY~~Saa----------TLn~lRa~~~gG~adl~~~~~W~~~f~~~s~~~~ry~~~~~~---i~~al~Fm~ 286 (373)
.-||.|||+++..++. |++.||.... .-+..|-......+.+.++-.. ...+|+.|.
T Consensus 343 ~~dP~riLr~fr~aa~~~~~~~i~~~T~~~i~~~~~----------~i~~~~~~~er~~~ef~~iL~~~~~~~~~l~~m~ 412 (856)
T PRK03059 343 ERHPHAILEAFLLYQQTPGLKGLSARTLRALYNARD----------VMNAAFRRDPVNRALFMQILQQPRGITHALRLMN 412 (856)
T ss_pred hcCHHHHHHHHHHHHhcCCccCcCHHHHHHHHHHHH----------hcCcccccCHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 3799999999988764 5566654221 0011111222333445554443 346789999
Q ss_pred HhcCCCC
Q 017323 287 AAGLTLD 293 (373)
Q Consensus 287 a~G~~~~ 293 (373)
.+|+-..
T Consensus 413 ~~GlL~~ 419 (856)
T PRK03059 413 QTSVLGR 419 (856)
T ss_pred HhCCHHH
Confidence 9988654
No 41
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=20.45 E-value=1.3e+02 Score=30.06 Aligned_cols=36 Identities=28% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhc---CCCCeEeeeccccCCCC-CCCCcccccCCeeccCccC
Q 017323 158 RVLLQMGVVLMFG---GQMPIIKVGRMAGQFAK-PRSDPFEVKNGVKLPSYKG 206 (373)
Q Consensus 158 ~~LlqMa~vL~~g---~~~PVVkVGRiAGQfAK-PRS~~~E~~dGv~LPsYRG 206 (373)
..++++|..+... .+.+.|. -|-|-| |||+++ ||||
T Consensus 16 e~~~~~A~~lk~~~~~~~~~~~f----k~sf~KapRTsp~---------sFqG 55 (258)
T TIGR01362 16 DHALRVAEKLKELTSKLGVPFIF----KSSFDKANRSSIH---------SFRG 55 (258)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEE----ecccCCCCCCCCC---------CCCC
No 42
>smart00718 DM4_12 DM4/DM12 family of domains in Drosophila melanogaster proteins of unknown function.
Probab=20.43 E-value=1.5e+02 Score=24.77 Aligned_cols=47 Identities=26% Similarity=0.349 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHHHHHH-HhCCCeeEEecCCccchhhccChhh
Q 017323 98 QLETVLKTLEDFPPLVFAGEARSLEERLAE-AAMGNAFLLQGGDCAESFKEFNANN 152 (373)
Q Consensus 98 ~L~~V~~~L~~lPPLV~a~Ei~~Lr~~LA~-vA~G~aFlLQGGDCAEsF~e~~~~~ 152 (373)
-+.+++..|=+.| ...| +.+....-+ -..|.. ||||++-|.+|.-+.
T Consensus 45 ll~ell~ilftps---~~~~-~~~~~~Y~~A~~~G~~----g~dC~~~y~~C~~s~ 92 (95)
T smart00718 45 LLGELLRIVLTPP---DELE-EVLDPDYREAYRAGRA----GGDCDRLYSHCPLSL 92 (95)
T ss_pred hHHHHHHHhhcCC---cchh-hhchHHHHHHHHcCCC----CCCHHHHhCcCchhh
Confidence 6777777766655 2222 344333333 345655 999999999998654
No 43
>PRK12853 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=20.14 E-value=61 Score=34.64 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=20.8
Q ss_pred CCCCCCHHHHHHHHHHHh---------cCCCCcCHHHHHHHHH
Q 017323 90 LPEYPDKAQLETVLKTLE---------DFPPLVFAGEARSLEE 123 (373)
Q Consensus 90 qP~ypD~~~L~~V~~~L~---------~lPPLV~a~Ei~~Lr~ 123 (373)
+=.|.|++.++...+.|. ++||-++..=++.|++
T Consensus 89 ~~d~~~~~~~~~L~~~l~~~~~~lfYLA~PP~~f~~i~~~L~~ 131 (482)
T PRK12853 89 QGDVTDPADYARLAEALGPGGNPVFYLAVPPSLFAPVVENLGA 131 (482)
T ss_pred ecCCCCHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHHh
Confidence 335667777777766663 2566666665555554
Done!