Query         017323
Match_columns 373
No_of_seqs    142 out of 456
Neff          3.7 
Searched_HMMs 29240
Date          Mon Mar 25 12:34:51 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017323hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3rzi_A Probable 3-deoxy-D-arab 100.0  3E-136  1E-140 1022.5  20.8  288   79-372    26-316 (462)
  2 3tqk_A Phospho-2-dehydro-3-deo  93.5     1.1 3.9E-05   44.3  13.7  159  117-371    32-192 (346)
  3 3tml_A 2-dehydro-3-deoxyphosph  88.8    0.56 1.9E-05   45.1   5.8   39  332-372   108-147 (288)
  4 3sz8_A 2-dehydro-3-deoxyphosph  85.5     2.2 7.5E-05   40.9   7.9   39  332-372   111-150 (285)
  5 3fs2_A 2-dehydro-3-deoxyphosph  83.8     2.2 7.6E-05   41.2   7.1   39  332-372   132-171 (298)
  6 1n8f_A DAHP synthetase; (beta/  59.0     5.1 0.00017   39.6   2.9   39  332-371   157-195 (350)
  7 3p0t_A Uncharacterized protein  51.2      86  0.0029   25.5   8.8   96  131-238    40-135 (138)
  8 1of8_A Phospho-2-dehydro-3-deo  49.2     8.9 0.00031   38.2   2.8  155  118-371    51-210 (370)
  9 2rf4_B DNA-directed RNA polyme  38.9      14 0.00047   30.2   1.9   23   96-118    61-83  (87)
 10 1vs1_A 3-deoxy-7-phosphoheptul  35.8      16 0.00053   34.6   2.1   40  332-372   122-161 (276)
 11 3ohe_A Histidine triad (HIT) p  34.7   2E+02  0.0067   23.9  10.0   84  141-232    43-128 (137)
 12 1miw_A TRNA CCA-adding enzyme;  33.7      50  0.0017   32.4   5.4   62  222-295   154-225 (404)
 13 1vfg_A A-adding enzyme, poly A  31.9      50  0.0017   32.0   5.0   60  222-292   149-219 (390)
 14 4e9i_A Glucose-6-phosphate 1-d  31.7      45  0.0015   34.8   4.9   59  120-207   295-354 (541)
 15 3i24_A HIT family hydrolase; s  25.7      72  0.0025   27.2   4.4   61  141-209    43-103 (149)
 16 3aql_A Poly(A) polymerase; tra  25.2 1.5E+02  0.0052   29.2   7.2   60  222-293   178-247 (415)
 17 2nwr_A 2-dehydro-3-deoxyphosph  21.9      37  0.0013   31.9   2.0   38  333-372    96-134 (267)
 18 1zco_A 2-dehydro-3-deoxyphosph  20.9      43  0.0015   31.1   2.2   40  332-372   107-146 (262)
 19 3nrd_A Histidine triad (HIT) p  20.1 1.1E+02  0.0038   25.3   4.4   61  141-209    45-105 (135)

No 1  
>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathway, aromatic biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium tuberculosis} SCOP: c.1.10.8 PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 3pfp_A* 2w19_A 2w1a_A*
Probab=100.00  E-value=3e-136  Score=1022.52  Aligned_cols=288  Identities=44%  Similarity=0.747  Sum_probs=281.6

Q ss_pred             CcccccCccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhccChhhHHHHHH
Q 017323           79 LEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFR  158 (373)
Q Consensus        79 p~sWr~~pa~QqP~ypD~~~L~~V~~~L~~lPPLV~a~Ei~~Lr~~LA~vA~G~aFlLQGGDCAEsF~e~~~~~I~~k~~  158 (373)
                      ++|||++|++|||.|| +++|+.|+++|+++||||+++||++||++||+||+|+|||||||||||+|++|++++|++|++
T Consensus        26 ~~sWr~~pa~QqP~yp-~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~La~va~G~AFlLQGGDCAEsF~~~~~~~ir~k~~  104 (462)
T 3rzi_A           26 LDAALAKPAAQQPTWP-ADQALAMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGGDCAETFMDNTEPHIRGNVR  104 (462)
T ss_dssp             HHHHHTSCCTTCCCCC-HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHTTSCEEEEEECSSCCSTTCCHHHHHHHHH
T ss_pred             ccchhhCCcccCCCCC-HHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHCCCEEEEeCccccCChhhcChHHHHHHHH
Confidence            4799999999999999 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeeccCccCcccCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 017323          159 VLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAATLN  238 (373)
Q Consensus       159 ~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~dGv~LPsYRGD~VN~~~f~~~aR~PDP~RLl~AY~~SaaTLn  238 (373)
                      +|+|||+||++++++|||||||||||||||||+++|   |++||||||||||+.+||+++|+|||+|||+||++|++|||
T Consensus       105 ~llqMa~vLt~g~~~PVVkvGRiAGQfAKPRSs~~E---Gv~LPsYRGD~VNg~~f~~~aR~PDP~Rll~aY~~SaatlN  181 (462)
T 3rzi_A          105 ALLQMAVVLTYGASMPVVKVARIAGQYAKPRSADID---ALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMN  181 (462)
T ss_dssp             HHHHHHHHHHHHHTSCEEEEEECSCCCCCCCSCSBC---TTSSBCCCCTTTSCSSSSHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCeEEecccccccCCCCCCCcC---CCcccccCCccccCCCCChhhcCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999   99999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCCcccccccccchhhhhccCchhhHHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccccc
Q 017323          239 LLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALT  318 (373)
Q Consensus       239 ~lRa~~~gG~adl~~~~~W~~~f~~~s~~~~ry~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~aLt  318 (373)
                      +||+|++|||||||++++||++|+++++.+++|++++++|++||+||++||++.+  .+.+++||||||||||+||+|||
T Consensus       182 llRa~~~gG~Adl~~~~~W~~~fv~~s~~~~~y~~la~~i~~al~Fm~a~G~~~~--~l~~~~~ytSHEaLlL~YE~alt  259 (462)
T 3rzi_A          182 LVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACGVADR--NLQTAEIYASHEALVLDYERAML  259 (462)
T ss_dssp             HHHHHHHTTTTCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTTCCCG--GGSCCCCEEEEECCCHHHHHHTE
T ss_pred             HHHHhccCChhhhhccccchhhhcccChhhhHHHHHHHHHHHHHHHHHHcCCCcc--cccccceeechHhhccchhhhhh
Confidence            9999999999999999999999999999999999999999999999999999987  57899999999999999999999


Q ss_pred             ccc---CCCCCcccCCCCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCcccc
Q 017323          319 RRD---STSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVFAIWDLFVI  372 (373)
Q Consensus       319 R~d---~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGPs~tp~~~  372 (373)
                      |.|   +.+|.|||||||||||||||||||||||||||||+|||||||||+|+||++
T Consensus       260 R~d~~~~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGP~~~p~el  316 (462)
T 3rzi_A          260 RLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELA  316 (462)
T ss_dssp             EECCC----CCEEETTCSEEEECTTTCCTTSHHHHHHHHCCSCEEEEECTTCCHHHH
T ss_pred             cccccCCCCCCccccccccceeccccCCCCccHHHHHhcCCCCeeEeECCCCCHHHH
Confidence            999   889999999999999999999999999999999999999999999999985


No 2  
>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}
Probab=93.52  E-value=1.1  Score=44.26  Aligned_cols=159  Identities=24%  Similarity=0.302  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHhCCC--eeEEecCCccchhhccChhhHHHHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCccc
Q 017323          117 EARSLEERLAEAAMGN--AFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFE  194 (373)
Q Consensus       117 Ei~~Lr~~LA~vA~G~--aFlLQGGDCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E  194 (373)
                      -|..=|+.+.++-.|+  .|++=.|=|+=-    +++.+.+-.+-|..++.-+.. ...-|.|     |-|-|||++   
T Consensus        32 ~v~~~R~~i~~Il~G~d~rllVIaGPCSie----d~eq~leyA~~Lk~~~~~~~d-~l~~vmR-----~y~~KPRTs---   98 (346)
T 3tqk_A           32 TVRKSRKEIANIIHGNDDRVAVVVGPCSIH----DPAAAIEYATKLKEQVKKFHK-DILIIMR-----VYFEKPRTT---   98 (346)
T ss_dssp             HHHHHHHHHHHHHHTSSCSEEEEEECSSCS----CHHHHHHHHHHHHHHHHHHTT-TEEEEEE-----CCCCCCCSS---
T ss_pred             HHHHHHHHHHHHHcCCCCCEEEEEecCccC----CHHHHHHHHHHHHHHHhhhcc-cceEEee-----ecccCCCCC---
Confidence            3555688899998886  599999999643    455555555555555544332 1122444     558899987   


Q ss_pred             ccCCeeccCccCcccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHH
Q 017323          195 VKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQEL  274 (373)
Q Consensus       195 ~~dGv~LPsYRGD~VN~~~f~~~aR~PDP~RLl~AY~~SaaTLn~lRa~~~gG~adl~~~~~W~~~f~~~s~~~~ry~~~  274 (373)
                             +.|.| ++|+|..+-.   +|   +.       .-|..+|.|.                              
T Consensus        99 -------~g~kG-L~nDP~ld~s---~~---i~-------~GL~~~R~ll------------------------------  127 (346)
T 3tqk_A           99 -------IGWKG-FINDPDLDNS---YN---IN-------KGLRLARNLL------------------------------  127 (346)
T ss_dssp             -------CSCCC-TTTCTTSSSC---CC---HH-------HHHHHHHHHH------------------------------
T ss_pred             -------cCccc-cccCCCCCCC---cc---HH-------HHHHHHHHHH------------------------------
Confidence                   35777 6677554422   11   22       2333333211                              


Q ss_pred             HHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccccccccCCCCCcccCCCCceeeccccCCCCchhHHHhhh
Q 017323          275 AHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRG  354 (373)
Q Consensus       275 ~~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~aLtR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrg  354 (373)
                              .-....|+...      +      |.|           |+.+-.|..----|.|||-||-| .--|-|..+|
T Consensus       128 --------~~~~e~GLpia------t------E~l-----------d~~~~qyv~dlvs~~aIGARt~e-nq~hre~asg  175 (346)
T 3tqk_A          128 --------SDLTNMGLPCA------T------EFL-----------DVITPQYFAELITWGAIGARTVE-SQVHRELASG  175 (346)
T ss_dssp             --------HHHHHTTCCEE------E------ECC-----------SSSGGGGTGGGCSEEEECGGGTT-CHHHHHHHTT
T ss_pred             --------HHHHhcCCCEE------E------Eec-----------CcCCHHHHHHHhheeeeCccccc-CHHHHHHhcC
Confidence                    00122343211      1      211           11112233222448899999999 5799999999


Q ss_pred             ccCcceeeeCCCCCccc
Q 017323          355 IANPLGIKVFAIWDLFV  371 (373)
Q Consensus       355 I~NPIGvKvGPs~tp~~  371 (373)
                      +.-|||+|=|-+.+.++
T Consensus       176 ~s~PVg~Kngt~gti~~  192 (346)
T 3tqk_A          176 LSASIGFKNATNGDVQV  192 (346)
T ss_dssp             CSSEEEEECCTTCCSHH
T ss_pred             CCCceEEeCCCCCchHH
Confidence            99999999998887664


No 3  
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=88.79  E-value=0.56  Score=45.07  Aligned_cols=39  Identities=18%  Similarity=0.111  Sum_probs=31.7

Q ss_pred             CCceeecccc-CCCCchhHHHhhhccCcceeeeCCCCCcccc
Q 017323          332 AHMLWVGERT-RQLDGAHVEFLRGIANPLGIKVFAIWDLFVI  372 (373)
Q Consensus       332 aH~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGPs~tp~~~  372 (373)
                      .-++|||-|- |+.+  ++..+.+..-||++|=|-+++++||
T Consensus       108 vd~lkIgA~~~~n~~--LLr~~a~~gkPVilK~G~~~t~~e~  147 (288)
T 3tml_A          108 VDVLQTPAFLCRQTD--FIHACARSGKPVNIKKGQFLAPHDM  147 (288)
T ss_dssp             CSEEEECGGGTTCHH--HHHHHHTSSSCEEEECCTTCCTTHH
T ss_pred             CCEEEECcccccCHH--HHHHHHccCCcEEEeCCCCCCHHHH
Confidence            4489999964 4444  6777899999999999999999876


No 4  
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=85.49  E-value=2.2  Score=40.95  Aligned_cols=39  Identities=23%  Similarity=0.176  Sum_probs=32.7

Q ss_pred             CCceeecccc-CCCCchhHHHhhhccCcceeeeCCCCCcccc
Q 017323          332 AHMLWVGERT-RQLDGAHVEFLRGIANPLGIKVFAIWDLFVI  372 (373)
Q Consensus       332 aH~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGPs~tp~~~  372 (373)
                      .-++|||-|. |+.+  ++..+.+..-||++|=|-+++++||
T Consensus       111 vd~lqIgA~~~~n~~--LLr~va~~gkPVilK~G~~~t~~ei  150 (285)
T 3sz8_A          111 ADVLQVPAFLARQTD--LVVAIAKAGKPVNVKKPQFMSPTQL  150 (285)
T ss_dssp             CSEEEECGGGTTCHH--HHHHHHHTSSCEEEECCTTSCGGGT
T ss_pred             CCEEEECccccCCHH--HHHHHHccCCcEEEeCCCCCCHHHH
Confidence            4489999964 4444  8888999999999999999999887


No 5  
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=83.85  E-value=2.2  Score=41.24  Aligned_cols=39  Identities=13%  Similarity=0.037  Sum_probs=32.4

Q ss_pred             CCceeecccc-CCCCchhHHHhhhccCcceeeeCCCCCcccc
Q 017323          332 AHMLWVGERT-RQLDGAHVEFLRGIANPLGIKVFAIWDLFVI  372 (373)
Q Consensus       332 aH~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGPs~tp~~~  372 (373)
                      .-++|||-|- |+.+  .+..+.+..-||++|=|-+++++||
T Consensus       132 vd~lkIgA~~~~n~~--LLr~va~~gkPVilK~Gms~t~~ei  171 (298)
T 3fs2_A          132 VDVLQIPAFLCRQTD--LLIAAARTGRVVNVKKGQFLAPWDM  171 (298)
T ss_dssp             CSEEEECGGGTTCHH--HHHHHHHTTSEEEEECCTTCCGGGH
T ss_pred             CCEEEECccccCCHH--HHHHHHccCCcEEEeCCCCCCHHHH
Confidence            4589999964 4444  7778899999999999999999886


No 6  
>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A*
Probab=59.03  E-value=5.1  Score=39.64  Aligned_cols=39  Identities=26%  Similarity=0.288  Sum_probs=34.8

Q ss_pred             CCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCccc
Q 017323          332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKVFAIWDLFV  371 (373)
Q Consensus       332 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGPs~tp~~  371 (373)
                      .-|+|||=||-+ .-.|.+..+|+.-|||+|=|-..++++
T Consensus       157 vd~~qIGAR~~e-sq~hr~~asg~~~PVg~Kngt~g~i~~  195 (350)
T 1n8f_A          157 MSWGAIGARTTE-SQVHRELASGLSCPVGFKNGTDGTIKV  195 (350)
T ss_dssp             CSEEEECTTTTT-CHHHHHHHHTCSSCEEEECCTTCCSHH
T ss_pred             CcEEEECCcccc-CHHHHHHHhcCCCeEEEecCCCCCHHH
Confidence            349999999876 568999999999999999999998876


No 7  
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=51.20  E-value=86  Score=25.54  Aligned_cols=96  Identities=17%  Similarity=0.242  Sum_probs=61.7

Q ss_pred             CCeeEEecCCccchhhccChhhHHHHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeeccCccCcccC
Q 017323          131 GNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNIN  210 (373)
Q Consensus       131 G~aFlLQGGDCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~dGv~LPsYRGD~VN  210 (373)
                      |...|+== .-.++|.|++++.+.+-++++..++..|....+..-+.+ ++|||=- |      -+-=.-+|-|.||-+|
T Consensus        40 gH~LViPk-~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~-~~~gq~v-~------HlH~HiiPr~~~d~~~  110 (138)
T 3p0t_A           40 GHTLVVPR-EEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRTERSGL-IIAGLEV-P------HLHVHVFPTRSLSDFG  110 (138)
T ss_dssp             TCEEEEES-SCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEE-EECCSSC-S------SCCEEEEEESCGGGSS
T ss_pred             cEEEEEEh-HHhCchhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcE-EECCccc-C------EEEEEEeccccCCCCc
Confidence            44444443 236778999999999999999999988866555554555 3677721 1      1112347889887555


Q ss_pred             CCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 017323          211 GDAFDEKSRVPDPERLIRAYCQSAATLN  238 (373)
Q Consensus       211 ~~~f~~~aR~PDP~RLl~AY~~SaaTLn  238 (373)
                         |.......+|+-|-..|..=+..|+
T Consensus       111 ---~~~~~~~~~~~~l~~~~~~l~~~l~  135 (138)
T 3p0t_A          111 ---FANVDRNPSPESLDEAQAKIKAALA  135 (138)
T ss_dssp             ---STTCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             ---ccCCCCCCCHHHHHHHHHHHHHHHH
Confidence               3333677888887777665544443


No 8  
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*
Probab=49.20  E-value=8.9  Score=38.23  Aligned_cols=155  Identities=23%  Similarity=0.310  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHhCC--CeeEEecCCccchhhccChhhHHHHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccc
Q 017323          118 ARSLEERLAEAAMG--NAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEV  195 (373)
Q Consensus       118 i~~Lr~~LA~vA~G--~aFlLQGGDCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~  195 (373)
                      |..=|+.++++-.|  ..|++=.|=|.=-    +++.+.+-.+-|..++.-+  +.++++|-    =+-|-|||++    
T Consensus        51 v~~~r~~i~~Il~g~d~rllvIaGPCSIe----d~e~aleyA~~Lk~~~~~~--~d~l~iVm----R~yfeKPRTs----  116 (370)
T 1of8_A           51 AKRGRREAIDIITGKDDRVLVIVGPCSIH----DLEAAQEYALRLKKLSDEL--KGDLSIIM----RAYLEKPRTT----  116 (370)
T ss_dssp             HHHHHHHHHHHHTTSCCSEEEEEECSCCC----CHHHHHHHHHHHHHHHHHH--TTTEEEEE----ECCCCCCCSS----
T ss_pred             HHHHHHHHHhhhcCCCCCeEEEEeCCcCC----CHHHHHHHHHHHHHHHHhh--ccCeEEEE----EeccccccCC----
Confidence            44457888888888  4799999999532    4455555555555556554  23455543    5679999998    


Q ss_pred             cCCeeccCccCcccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHH
Q 017323          196 KNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELA  275 (373)
Q Consensus       196 ~dGv~LPsYRGD~VN~~~f~~~aR~PDP~RLl~AY~~SaaTLn~lRa~~~gG~adl~~~~~W~~~f~~~s~~~~ry~~~~  275 (373)
                            |-|+| +||++..+-+-|-             ..-|..+|.+.                               
T Consensus       117 ------~GwKG-li~dP~ld~Sf~g-------------~~GL~i~r~ll-------------------------------  145 (370)
T 1of8_A          117 ------VGWKG-LINDPDVNNTFNI-------------NKGLQSARQLF-------------------------------  145 (370)
T ss_dssp             ------SSCCC-TTTCTTSSSCCCH-------------HHHHHHHHHHH-------------------------------
T ss_pred             ------ccccc-cccCCCcCCCcCH-------------HHHHHHHHHHH-------------------------------
Confidence                  33666 4777655433222             22333333211                               


Q ss_pred             HHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccccccccCCCCCcccCCCC---ceeeccccCCCCchhHHHh
Q 017323          276 HRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALTRRDSTSGQYYDCSAH---MLWVGERTRQLDGAHVEFL  352 (373)
Q Consensus       276 ~~i~~al~Fm~a~G~~~~~~~~~~~~~~TSHEaLLL~YE~aLtR~d~~~g~~Y~~SaH---~lWIGeRTRqlDgAHVefl  352 (373)
                             .-+...|+..      -+||-   +.     +++         . |.  +-   |.|||=||-+= --|.|..
T Consensus       146 -------~~v~e~GlPv------aTEvl---d~-----~~~---------q-yv--~Dllsw~aIGARt~es-q~hre~A  191 (370)
T 1of8_A          146 -------VNLTNIGLPI------GSEML---DT-----ISP---------Q-YL--ADLVSFGAIGARTTES-QLHRELA  191 (370)
T ss_dssp             -------HHHHTTTCCE------EEECC---SS-----STH---------H-HH--GGGCSEEEECTTTTTC-HHHHHHH
T ss_pred             -------HHHHHcCCce------EEeec---Cc-----ccH---------H-HH--HHHHhhccccCccccc-HHHHHHH
Confidence                   0112233321      11211   11     111         1 11  22   45999998775 9999999


Q ss_pred             hhccCcceeeeCCCCCccc
Q 017323          353 RGIANPLGIKVFAIWDLFV  371 (373)
Q Consensus       353 rgI~NPIGvKvGPs~tp~~  371 (373)
                      +|+.-|||+|=|-..++++
T Consensus       192 sgl~~PVg~Kngt~g~i~~  210 (370)
T 1of8_A          192 SGLSFPVGFKNGTDGTLNV  210 (370)
T ss_dssp             HTCSSCEEEECCTTSCSHH
T ss_pred             hcCCCeEEEcCCCCCCHHH
Confidence            9999999999999988875


No 9  
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=38.86  E-value=14  Score=30.19  Aligned_cols=23  Identities=22%  Similarity=0.359  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHhcCCCCcCHHHH
Q 017323           96 KAQLETVLKTLEDFPPLVFAGEA  118 (373)
Q Consensus        96 ~~~L~~V~~~L~~lPPLV~a~Ei  118 (373)
                      -.+|.+|.+.|+.|||++...|.
T Consensus        61 LsQLKRvQRdlrGLPP~~~e~~~   83 (87)
T 2rf4_B           61 ISQLKRIQRDFKGLPPAQDFSAA   83 (87)
T ss_dssp             HHHHHHHHHHHHHSCC-------
T ss_pred             HHHHHHHHHhhcCCCcchhcccC
Confidence            46799999999999999987663


No 10 
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=35.84  E-value=16  Score=34.60  Aligned_cols=40  Identities=20%  Similarity=0.081  Sum_probs=35.7

Q ss_pred             CCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCcccc
Q 017323          332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKVFAIWDLFVI  372 (373)
Q Consensus       332 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGPs~tp~~~  372 (373)
                      .-+++||=|+=+ +-.|++.+++..-||++|-|-+++++||
T Consensus       122 vd~~kIgs~~~~-n~~ll~~~a~~~kPV~lk~G~~~t~~ei  161 (276)
T 1vs1_A          122 ADMLQIGARNMQ-NFPLLREVGRSGKPVLLKRGFGNTVEEL  161 (276)
T ss_dssp             CSEEEECGGGTT-CHHHHHHHHHHTCCEEEECCTTCCHHHH
T ss_pred             CCeEEECccccc-CHHHHHHHHccCCeEEEcCCCCCCHHHH
Confidence            348999999877 7889999999999999999999888876


No 11 
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=34.68  E-value=2e+02  Score=23.87  Aligned_cols=84  Identities=10%  Similarity=-0.008  Sum_probs=58.1

Q ss_pred             ccchhhccChhhHHHHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeeccCccCcccCC-CCCC-CCC
Q 017323          141 CAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNING-DAFD-EKS  218 (373)
Q Consensus       141 CAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~dGv~LPsYRGD~VN~-~~f~-~~a  218 (373)
                      -.+++.|++++...+-+..+..++..|....+..-+.|| .|||-=       --+-=.-+|-|.||.... +-+. ...
T Consensus        43 h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~-~aGq~V-------~HlH~HviPR~~~D~~~p~~vw~~~~~  114 (137)
T 3ohe_A           43 GIREIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVA-ALGNMV-------PQLHLHHIVRYQGDPAWPGPVWGKQPP  114 (137)
T ss_dssp             TCCSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE-ECCSSC-------CSCCEEEEEECTTSTTTTSCCTTSSCC
T ss_pred             ccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe-eccCcC-------CEEEEEEeCCCCCCCCCCcccccCCCC
Confidence            357888999999888899999999999887777789999 888842       112235688999987642 2222 234


Q ss_pred             CCCChHHHHHHHHH
Q 017323          219 RVPDPERLIRAYCQ  232 (373)
Q Consensus       219 R~PDP~RLl~AY~~  232 (373)
                      +..|++-|-.-+..
T Consensus       115 ~~~~~eel~~~~~~  128 (137)
T 3ohe_A          115 VPYTEEQQASVKAK  128 (137)
T ss_dssp             CCCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH
Confidence            55677655444433


No 12 
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*
Probab=33.72  E-value=50  Score=32.38  Aligned_cols=62  Identities=21%  Similarity=0.151  Sum_probs=36.7

Q ss_pred             ChHHHHHHHHHHH--------HHHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHH--HHHHHHhHHHHhcCC
Q 017323          222 DPERLIRAYCQSA--------ATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAH--RVDEALGFMAAAGLT  291 (373)
Q Consensus       222 DP~RLl~AY~~Sa--------aTLn~lRa~~~gG~adl~~~~~W~~~f~~~s~~~~ry~~~~~--~i~~al~Fm~a~G~~  291 (373)
                      ||-|||+|+..++        .|++.|+.... .+           ..+...-...++..+..  ....+|..|..+|+-
T Consensus       154 DPlRiLRa~Rfaa~lgf~i~~~T~~ai~~~~~-~l-----------~~is~eRi~~El~kiL~~~~~~~~l~~l~~~Gll  221 (404)
T 1miw_A          154 DALRMMRAVRFVSELGFALAPDTEQAIVQNAP-LL-----------AHISVERMTMEMEKLLGGPFAARALPLLAETGLN  221 (404)
T ss_dssp             CTHHHHHHHHHHHHHCCEECHHHHHHHHHHGG-GG-----------GGSCHHHHHHHHHHHHTSSSHHHHHHHHHHSTTT
T ss_pred             hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-hh-----------ccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcch
Confidence            9999999999887        57787776431 11           11212122223333322  235678899999886


Q ss_pred             CCCC
Q 017323          292 LDHP  295 (373)
Q Consensus       292 ~~~~  295 (373)
                      ..-|
T Consensus       222 ~~lP  225 (404)
T 1miw_A          222 AYLP  225 (404)
T ss_dssp             TSST
T ss_pred             hhCc
Confidence            5434


No 13 
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4
Probab=31.91  E-value=50  Score=32.04  Aligned_cols=60  Identities=20%  Similarity=0.182  Sum_probs=34.8

Q ss_pred             ChHHHHHHHHHHH--------HHHHHHHhhhcCC-cccccccccchhhhhccCchhhHHHHHHH--HHHHHHhHHHHhcC
Q 017323          222 DPERLIRAYCQSA--------ATLNLLRSFATGG-YAAMQRVTQWNLDFAEHSEQGDRYQELAH--RVDEALGFMAAAGL  290 (373)
Q Consensus       222 DP~RLl~AY~~Sa--------aTLn~lRa~~~gG-~adl~~~~~W~~~f~~~s~~~~ry~~~~~--~i~~al~Fm~a~G~  290 (373)
                      ||-|||+++..++        .|++.|+.....+ +..+.           ..-...++..+..  ....+|+.|..+|+
T Consensus       149 DPlRiLRa~Rfaa~~gf~i~~~T~~~i~~~~~~~~l~~~s-----------~eRi~~El~kiL~~~~~~~~l~~l~~~gl  217 (390)
T 1vfg_A          149 DPVRILRALRFAGRLNFKLSRSTEKLLKQAVNLGLLKEAP-----------RGRLINEIKLALREDRFLEILELYRKYRV  217 (390)
T ss_dssp             CTTHHHHHHHHHHHHTCEECHHHHHHHHHHHHTTGGGTSC-----------HHHHHHHHHHHHHCSSHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhhccC-----------HHHHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence            9999999999887        4778887654322 22111           1111223333322  23467788888886


Q ss_pred             CC
Q 017323          291 TL  292 (373)
Q Consensus       291 ~~  292 (373)
                      -.
T Consensus       218 L~  219 (390)
T 1vfg_A          218 LE  219 (390)
T ss_dssp             HH
T ss_pred             HH
Confidence            54


No 14 
>4e9i_A Glucose-6-phosphate 1-dehydrogenase; pentose phosphate pathway, alpha beta, NAD(P) rossmann-like domain, oxidoreductase; 2.85A {Trypanosoma cruzi} PDB: 4em5_A*
Probab=31.72  E-value=45  Score=34.81  Aligned_cols=59  Identities=29%  Similarity=0.435  Sum_probs=43.5

Q ss_pred             HHHHHHHHHhCCCeeEEecCCccchhhccChhhHHH-HHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCC
Q 017323          120 SLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRD-TFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNG  198 (373)
Q Consensus       120 ~Lr~~LA~vA~G~aFlLQGGDCAEsF~e~~~~~I~~-k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~dG  198 (373)
                      .|-+-|+-||+            |....++++.||+ |+|+|..|--+ .   .--||+     |||.+=       .+|
T Consensus       295 HLlQlL~LvAM------------EpP~s~~a~~iRdEKvKVLralrpi-~---~~~vVr-----GQY~~g-------~~g  346 (541)
T 4e9i_A          295 HLTQILSLLTM------------EKPRSLSAEDIRDEKVQVLRQVVPA-N---PAECVL-----GQYTAS-------ADG  346 (541)
T ss_dssp             HHHHHHHHHHC------------CCCSSSSHHHHHHHHHHHHTTBCCC-C---TTSEEE-----EEEECC-------SSS
T ss_pred             HHHHHHHHHhc------------CCCCCCCHHHHHHHHHHHHHccCCC-C---ccceEE-----ccccCC-------CCC
Confidence            68888999998            8888999999985 99999766432 1   112444     999762       266


Q ss_pred             eeccCccCc
Q 017323          199 VKLPSYKGD  207 (373)
Q Consensus       199 v~LPsYRGD  207 (373)
                       .+|.||-+
T Consensus       347 -~v~gY~~e  354 (541)
T 4e9i_A          347 -STPGYLDD  354 (541)
T ss_dssp             -SSCCGGGC
T ss_pred             -CCCCccCC
Confidence             88899875


No 15 
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=25.71  E-value=72  Score=27.16  Aligned_cols=61  Identities=10%  Similarity=0.081  Sum_probs=46.1

Q ss_pred             ccchhhccChhhHHHHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeeccCccCccc
Q 017323          141 CAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNI  209 (373)
Q Consensus       141 CAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~dGv~LPsYRGD~V  209 (373)
                      -.+++.|++++...+-++.+..++..|....+..-+.|| +|||-= |      =+-=.-+|-|.||..
T Consensus        43 Hv~~l~dL~~e~~~~l~~~~~~va~al~~~~~~~~~Ni~-~aGq~V-~------HlH~HvIPR~~~D~~  103 (149)
T 3i24_A           43 ELKEIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIG-ALGNLV-P------QLHIHHIARFTTDVA  103 (149)
T ss_dssp             TCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEE-ECCSSC-C------SCCEEEEEECTTSTT
T ss_pred             ccCChhHCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEh-hhhCCC-C------EEEEEEeCCccCCCC
Confidence            467888999999888889999999988876677779999 688832 1      112345888999864


No 16 
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=25.22  E-value=1.5e+02  Score=29.21  Aligned_cols=60  Identities=22%  Similarity=0.139  Sum_probs=34.5

Q ss_pred             ChHHHHHHHHHHH--------HHHHHHHhhhcCCcccccccccchhhhhccCchhhHHHHHHH--HHHHHHhHHHHhcCC
Q 017323          222 DPERLIRAYCQSA--------ATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAH--RVDEALGFMAAAGLT  291 (373)
Q Consensus       222 DP~RLl~AY~~Sa--------aTLn~lRa~~~gG~adl~~~~~W~~~f~~~s~~~~ry~~~~~--~i~~al~Fm~a~G~~  291 (373)
                      ||-|||+++..++        .|++.|+.... .           ++-+......+++.++..  ....+|+.|..+|+-
T Consensus       178 DPlRiLRa~Rfaarlgf~i~~~T~~ai~~~~~-~-----------l~~is~eRi~~E~~kiL~~~~~~~~l~~l~~~GlL  245 (415)
T 3aql_A          178 DPVRMLRAVRFAAKLGMRISPETAEPIPRLAT-L-----------LNDIPPAHLFEESLKLLQAGYGYETYKLLCEYHLF  245 (415)
T ss_dssp             CTHHHHHHHHHHHHTTCEECHHHHTHHHHHGG-G-----------GGGSCHHHHHHHHHHHHTSSCHHHHHHHHHHTTCS
T ss_pred             CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-h-----------hhcCChHHHHHHHHHHHcCCCHHHHHHHHHHcCCh
Confidence            8999999999886        57777775321 1           111111111222222211  235678999999986


Q ss_pred             CC
Q 017323          292 LD  293 (373)
Q Consensus       292 ~~  293 (373)
                      ..
T Consensus       246 ~~  247 (415)
T 3aql_A          246 QP  247 (415)
T ss_dssp             TT
T ss_pred             HH
Confidence            64


No 17 
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=21.87  E-value=37  Score=31.92  Aligned_cols=38  Identities=11%  Similarity=0.024  Sum_probs=30.2

Q ss_pred             Cceeecccc-CCCCchhHHHhhhccCcceeeeCCCCCcccc
Q 017323          333 HMLWVGERT-RQLDGAHVEFLRGIANPLGIKVFAIWDLFVI  372 (373)
Q Consensus       333 H~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGPs~tp~~~  372 (373)
                      -++|||=|- |+.|  .+..+++..-||++|=|-..+++||
T Consensus        96 d~~~IgA~~~rn~~--ll~~~a~~~~PV~lK~G~~~t~~e~  134 (267)
T 2nwr_A           96 DIIQIPAFLCRQTD--LLLAAAKTGRAVNVKKGQFLAPWDT  134 (267)
T ss_dssp             SEEEECGGGTTCHH--HHHHHHTTTSEEEEECCTTCCGGGG
T ss_pred             CEEEECcccccCHH--HHHHHHcCCCcEEEeCCCCCCHHHH
Confidence            489999842 2233  7777789999999999999999886


No 18 
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=20.91  E-value=43  Score=31.14  Aligned_cols=40  Identities=18%  Similarity=0.165  Sum_probs=33.2

Q ss_pred             CCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCcccc
Q 017323          332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKVFAIWDLFVI  372 (373)
Q Consensus       332 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGPs~tp~~~  372 (373)
                      .-+++||=|+=+ +-..+..+....-||++|=|-+.+++|+
T Consensus       107 vd~~kIga~~~~-n~~ll~~~a~~~kPV~lk~G~~~t~~e~  146 (262)
T 1zco_A          107 SDILQIGARNSQ-NFELLKEVGKVENPVLLKRGMGNTIQEL  146 (262)
T ss_dssp             CSEEEECGGGTT-CHHHHHHHTTSSSCEEEECCTTCCHHHH
T ss_pred             CCEEEECccccc-CHHHHHHHHhcCCcEEEecCCCCCHHHH
Confidence            348999999876 5667777888889999999999888875


No 19 
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Probab=20.12  E-value=1.1e+02  Score=25.28  Aligned_cols=61  Identities=11%  Similarity=-0.032  Sum_probs=45.3

Q ss_pred             ccchhhccChhhHHHHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeeccCccCccc
Q 017323          141 CAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNI  209 (373)
Q Consensus       141 CAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~dGv~LPsYRGD~V  209 (373)
                      -.++|.|++++...+-++.+..++..|....+.-=+.+| .|||-- |      -+-=.-+|-|.||..
T Consensus        45 h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~-~aGq~V-~------HlH~HviPR~~~D~~  105 (135)
T 3nrd_A           45 DIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIG-ALGNIV-R------QLHVHVIARREGDPN  105 (135)
T ss_dssp             TCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE-ECCSSC-C------SCCEEEEEECTTSTT
T ss_pred             ccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe-eccCCC-C------EEEEEEecCCCCCCC
Confidence            467889999999888889999888888765555568898 788842 1      122356888999874


Done!