BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017326
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap
Domain From Human Rho Gtpase Activating Protein 5
Variant
Length = 219
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 19/176 (10%)
Query: 130 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYN 189
++ FG+P++ V + KP+P + KC +++ +GL ++ L++ G+K ++ ++
Sbjct: 20 SNYFGMPLQDLVTAE---KPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFD 76
Query: 190 QDPN---ASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDE------IKGARSSIHAMR 240
QD N S+ VN VA K + A LP+PL + L+ E I +HA++
Sbjct: 77 QDHNINLVSMEVTVNA--VAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALK 134
Query: 241 NTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 296
+KK VN+ YV L RVSQ+ +N M A +L++ P +M +P+F
Sbjct: 135 EIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLM-----RPDF 185
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho
Gtpase Activating Protein 5 Variant
Length = 209
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 19/176 (10%)
Query: 130 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYN 189
++ FG+P++ V + KP+P + KC +++ +GL ++ L++ G+K ++ ++
Sbjct: 10 SNYFGMPLQDLVTAE---KPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFD 66
Query: 190 QDPN---ASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDE------IKGARSSIHAMR 240
QD N S+ VN VA K + A LP+PL + L+ E I +HA++
Sbjct: 67 QDHNINLVSMEVTVNA--VAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALK 124
Query: 241 NTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 296
+KK VN+ YV L RVSQ+ +N M A +L++ P +M +P+F
Sbjct: 125 EIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLM-----RPDF 175
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|B Chain B, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|C Chain C, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|D Chain D, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
Length = 246
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 91/181 (50%), Gaps = 19/181 (10%)
Query: 125 KGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHL 184
K ++ FGVP+ V + KP+P + +C +Y+ +GL+++ +++ G+K ++ L
Sbjct: 46 KATWESNYFGVPLTTVVTPE---KPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESL 102
Query: 185 VSMYNQDPNASLPE---GVNPFDVAALAKYYLASLPEPLTTFELY------DEIKGARSS 235
++QD N L E VN VA K + + LP+PL + + +I
Sbjct: 103 QRQFDQDHNLDLAEKDFTVN--TVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQK 160
Query: 236 IHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 295
+HA++ LKK N +YV + L +VS + +N M + +L++ P +M +P+
Sbjct: 161 LHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLM-----RPD 215
Query: 296 F 296
F
Sbjct: 216 F 216
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1RGP|A Chain A, Gtpase-Activation Domain From Rhogap
Length = 242
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 13/168 (7%)
Query: 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 192
FGV ++ ++ +P+P +L + YL L ++ +F+ + +V++ + YN
Sbjct: 45 FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN--- 101
Query: 193 NASLPEGVNPFD----VAALAKYYLASLPEPLTTFELYDEIKGARS-----SIHAMRNTL 243
LP + ++ A + K +L LPEPL TF+LY + G + + A L
Sbjct: 102 -MGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 160
Query: 244 KKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 291
+ L N+ L ++TA L+++S S NKM +LA+ P ++W K+
Sbjct: 161 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 208
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 198
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 13/168 (7%)
Query: 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 192
FGV ++ ++ +P+P +L + YL L ++ +F+ + +V++ + YN
Sbjct: 9 FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN--- 65
Query: 193 NASLPEGVNPFDV----AALAKYYLASLPEPLTTFELYDEIKGARS-----SIHAMRNTL 243
LP + ++ A + K +L LPEPL TF+LY + G + + A L
Sbjct: 66 -MGLPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 124
Query: 244 KKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 291
+ L N+ L ++TA L+++S S NKM +LA+ P ++W K+
Sbjct: 125 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 172
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX
Length = 203
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 13/168 (7%)
Query: 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 192
FGV ++ ++ +P+P +L + YL L ++ +F+ + +V++ + YN
Sbjct: 6 FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN--- 62
Query: 193 NASLPEGVNPFD----VAALAKYYLASLPEPLTTFELYDEIKGARS-----SIHAMRNTL 243
LP + ++ A + K +L LPEPL TF+LY + G + + A L
Sbjct: 63 -MGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 121
Query: 244 KKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 291
+ L N+ L ++TA L+++S S NKM +LA+ P ++W K+
Sbjct: 122 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 169
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|B Chain B, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|C Chain C, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 199
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 13/168 (7%)
Query: 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 192
FGV ++ ++ +P+P +L + YL L ++ +F+ + +V++ + YN
Sbjct: 10 FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN--- 66
Query: 193 NASLPEGVNPFD----VAALAKYYLASLPEPLTTFELYDEIKGARS-----SIHAMRNTL 243
LP + ++ A + K +L LPEPL TF+LY + G + + A L
Sbjct: 67 -MGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 125
Query: 244 KKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 291
+ L N+ L ++TA L+++S S NKM +LA+ P ++W K+
Sbjct: 126 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 173
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap
Length = 234
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 13/168 (7%)
Query: 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 192
FGV ++ ++ +P+P +L + YL L ++ +F + +V++ + YN
Sbjct: 37 FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFARSANTQVVREVQQKYN--- 93
Query: 193 NASLPEGVNPFD----VAALAKYYLASLPEPLTTFELYDEIKGARS-----SIHAMRNTL 243
LP + ++ A + K +L LPEPL TF+LY + G + + A L
Sbjct: 94 -MGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 152
Query: 244 KKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 291
+ L N+ L ++TA L+++S S NKM +LA+ P ++W K+
Sbjct: 153 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 200
>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain
Length = 228
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 12/163 (7%)
Query: 132 VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD 191
VFGVP+ V VQR G+P+P + + YL L+ LF+ G K IQ L M
Sbjct: 20 VFGVPLTVNVQRT--GQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGA 77
Query: 192 PNASLPEGVNPFDVAALAKYYLASLPEPLTT-------FELYDEI-KGARSSIHAMRNTL 243
+ EG + +DVA + K Y LPEPL T ++Y + K R + A++ +
Sbjct: 78 IDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQR--LQAIKAAI 135
Query: 244 KKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVI 286
L + N L+ + L V+ N+M +LA+ +AP +
Sbjct: 136 MLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSL 178
>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating
Protein 1 (Racgap1) Mgcracgap
Length = 201
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 150 VPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFD-VAAL 208
+P I+V C + + GL L++ G + ++ L + + L V+ + +L
Sbjct: 17 IPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSL 76
Query: 209 AKYYLASLPEPLTTFELYD------EIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLL 262
K +L +L EPL TF L EI +SI AM + +L N TL ++ L
Sbjct: 77 LKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQ 136
Query: 263 RVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 295
RV+Q S KMD +LA P I+ P+
Sbjct: 137 RVAQ-SPHTKMDVANLAKVFGPTIVAHAVPNPD 168
>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|B Chain B, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|C Chain C, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|D Chain D, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
Length = 214
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 124 QKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQH 183
+KG+ +FG + +R+ VP + +C + + GL+ +++ G+ IQ
Sbjct: 11 EKGLIKDQIFGSHLHKVCERE--NSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQK 68
Query: 184 LVSMYNQDPNASLPEGV--NPFDVAALAKYYLASLPEPLTTFELYDEIKGA------RSS 235
L + NQ+ +L + + V K + LPEPL + +++ A +
Sbjct: 69 LRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTR 128
Query: 236 IHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIM 287
I A+++ ++KL N T++ + L ++ K+ N M +SL + P ++
Sbjct: 129 IEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLL 180
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 17/157 (10%)
Query: 151 PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP-----NASLPEGVNPFDV 205
P ++ C + GLNS+ L++ G +I+ + +++D + ++ E +N +
Sbjct: 286 PMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINI--I 343
Query: 206 AALAKYYLASLPEPLTTFELYDE-IKGAR-----SSIHAMRNTLKKLSNVNFMTLEYVTA 259
K Y LP PL T++ Y + I+ A+ + + LK L + TL Y+ A
Sbjct: 344 TGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMA 403
Query: 260 LLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 296
L RV+ N M+A +L + P +M R PE
Sbjct: 404 HLKRVTLHEKENLMNAENLGIVFGPTLM----RSPEL 436
>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics
pdb|3IUG|B Chain B, Crystal Structure Of The Rhogap Domain Of Rics
Length = 229
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 10/154 (6%)
Query: 147 GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASL---PEGVNPF 203
G VP +L C ++ G+ +++ G IQ L ++ + L P +
Sbjct: 34 GFEVPQVLQSCTAFIERYGIVDG-IYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIH 92
Query: 204 DVAALAKYYLASLPEPLTTFELYDEIKGARSS------IHAMRNTLKKLSNVNFMTLEYV 257
V +L K Y LP PL T++LY++ A S+ + + + +++L ++ TLE++
Sbjct: 93 SVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFL 152
Query: 258 TALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 291
L ++ + M A++LA+ AP ++ K+
Sbjct: 153 MRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQ 186
>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin
Length = 202
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 17/157 (10%)
Query: 151 PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP-----NASLPEGVNPFDV 205
P ++ C + GLNS+ L++ G +I+ + +++D + ++ E +N +
Sbjct: 25 PMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINI--I 82
Query: 206 AALAKYYLASLPEPLTTFELYDE-IKGAR-----SSIHAMRNTLKKLSNVNFMTLEYVTA 259
K Y LP PL T++ Y + I+ A+ + + LK L + TL Y+ A
Sbjct: 83 TGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMA 142
Query: 260 LLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 296
L RV+ N M+A +L + P +M R PE
Sbjct: 143 HLKRVTLHEKENLMNAENLGIVFGPTLM----RSPEL 175
>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|B Chain B, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|C Chain C, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|D Chain D, Crystal Structure Of The Rhogap Domain Of Arhgap11a
Length = 271
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 17/192 (8%)
Query: 112 KSKTILTDIERWQKGVASTDV----FGVPIEVTVQRQ--QYGKPVPHILVKCADYLVLSG 165
K K + +R + A+T++ FGVP +YG +P LV L
Sbjct: 40 KVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVPEYGH-IPSFLVDACTSLE-DH 97
Query: 166 LNSQFLFKAEGDKKVIQHLVSMYNQ-DPNASLPEGVNPFDVAALAKYYLASLPEPLTTFE 224
++++ LF+ G + L ++ N+ D P D+A L K + LPEP+ +
Sbjct: 98 IHTEGLFRKSGS---VIRLKALKNKVDHGEGCLSSAPPCDIAGLLKQFFRELPEPILPAD 154
Query: 225 LYDEIKGARSSIHAMRN--TL---KKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLA 279
L++ + A+ +N TL L++ L Y L VS +S NKMD+ +LA
Sbjct: 155 LHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLA 214
Query: 280 MEMAPVIMWQKE 291
+ AP ++ E
Sbjct: 215 VIFAPNLLQTSE 226
>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 201
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 132 VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD 191
+FG+ + + KPV +L +L G ++ +F+ + K + L N
Sbjct: 12 LFGISLPNICENDNLPKPVLDMLF----FLNQKGPLTKGIFRQSANVKSCRELKEKLNSG 67
Query: 192 PNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYD------EIKGARSSIHAMRNTLKK 245
L + + F +A++ K +L ++P + + +LYD + I+ ++ L +
Sbjct: 68 VEVHL-DCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLDQ 126
Query: 246 LSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMW 288
L N + L Y+ +L + Q S N+M A +LA+ +AP I+W
Sbjct: 127 LPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILW 169
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 15/155 (9%)
Query: 151 PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD-PNASLPEGVNPFDVAALA 209
P ++ C + GL S+ L++ G + I+ + +++D A + V P D+ +
Sbjct: 289 PMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYP-DINIIT 347
Query: 210 ---KYYLASLPEPLTTFELYD------EIKGARSSIHAMRNTLKKLSNVNFMTLEYVTAL 260
K Y LP P+ T++ Y +I A + A+ L L ++ TL Y+
Sbjct: 348 GALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIH 407
Query: 261 LLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 295
L +V+ N M+A +L + P +M R PE
Sbjct: 408 LKKVTMNEKDNFMNAENLGIVFGPTLM----RPPE 438
>pdb|2QV2|A Chain A, A Role Of The Lowe Syndrome Protein Ocrl In Early Steps Of
The Endocytic Pathway
Length = 342
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
Query: 158 ADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGV--NPFDVAALAKYYLAS 215
D+L + + LF+ G ++ +Q ++ + S+PE + + VA +L +
Sbjct: 183 VDHLFKYACHQEDLFQTPGMQEELQQIIDCLD----TSIPETIPGSNHSVAEALLIFLEA 238
Query: 216 LPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDA 275
LPEP+ +ELY + R + +L + Y+ A L + + S N ++A
Sbjct: 239 LPEPVICYELYQRCLDSAYDPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNA 298
Query: 276 RSLAMEMAPVIM 287
+A +++
Sbjct: 299 NMIATLFTSLLL 310
>pdb|3QIS|A Chain A, Recognition Of The F&h Motif By The Lowe Syndrome Protein
Ocrl
Length = 366
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 158 ADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGV--NPFDVAALAKYYLAS 215
D+L + + LF+ G ++ +Q ++ + S+PE + + VA +L +
Sbjct: 207 VDHLFKYACHQEDLFQTPGMQEELQQIIDCLD----TSIPETIPGSNHSVAEALLIFLEA 262
Query: 216 LPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDA 275
LPEP+ +ELY + R + +L + Y+ A L + + S N ++A
Sbjct: 263 LPEPVICYELYQRCLDSAYDPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNA 322
Query: 276 RSLA 279
+A
Sbjct: 323 NMIA 326
>pdb|1PBW|A Chain A, Structure Of Bcr-Homology (Bh) Domain
pdb|1PBW|B Chain B, Structure Of Bcr-Homology (Bh) Domain
Length = 216
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 144 QQYGKP--VPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVN 201
+Q+ P P +L+K + + GL L++ + + + + P+ L E ++
Sbjct: 17 EQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNLAELRQLLDCDTPSVDL-EMID 75
Query: 202 PFDVAALAKYYLASLPEPLTTFELYD-------EIKGARSSIHAMRNTLK--KLSNVNFM 252
+A K YL LP P+ +Y E++ + I ++ ++ + + ++
Sbjct: 76 VHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWL 135
Query: 253 TLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIM 287
TL+Y+ ++SQ S N ++AR L+ +P++
Sbjct: 136 TLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLF 170
>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase
Regulator Associated With Focal Adhesion Kinase
Length = 231
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 13/151 (8%)
Query: 153 ILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASL---PEGVNPFDVAALA 209
I+ KC + G+N Q L++ G +Q L+S+ DP + E +++ +
Sbjct: 40 IIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSIL-MDPKTATETETEICAEWEIKTIT 98
Query: 210 ---KYYLASLPEPLTTFELYDE-IKGAR-----SSIHAMRNTLKKLSNVNFMTLEYVTAL 260
K YL LP PL ++ IK A+ S + + + + +L N L +
Sbjct: 99 SALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNH 158
Query: 261 LLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 291
L +V+ N M +L + P ++ +E
Sbjct: 159 LAKVADNHKQNLMTVANLGVVFGPTLLRPQE 189
>pdb|2KXI|A Chain A, Solution Nmr Structure Of The Apoform Of Nare (Nmb1343)
Length = 153
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 37/96 (38%), Gaps = 18/96 (18%)
Query: 39 KGNAADVAERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRGFSETKDKVAVG 98
KGN A+VA R K PS K+AV I G ++ S T DK
Sbjct: 24 KGNKAEVAIRYDGKFKYDGKATHGPSVKNAVYAHQIETGLYDGCYI----STTTDK---- 75
Query: 99 KIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFG 134
E AKK A S IE V + D+FG
Sbjct: 76 -----EIAKKFATSS-----GIENGYIYVLNRDLFG 101
>pdb|2XS6|A Chain A, Crystal Structure Of The Rhogap Domain Of Human Pik3r2
Length = 214
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 14/130 (10%)
Query: 144 QQYGKP--VPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVN 201
+Q+ P P +LVK + + +GL+S+ ++ E +S +Q A+L +G+
Sbjct: 32 EQFSPPDVAPPLLVKLVEAIERTGLDSESHYRPELPAPRTDWSLSDVDQWDTAALADGI- 90
Query: 202 PFDVAALAKYYLASLPEPLTTFELYDEIKGA-RSSIHAMRNTLKK--LSNVNFMTLEYVT 258
K +L +LP PL T E E + A R + + L+ L +TL ++
Sbjct: 91 --------KSFLLALPAPLVTPEASAEARRALREAAGPVGPALEPPTLPLHRALTLRFLL 142
Query: 259 ALLLRVSQKS 268
L RV++++
Sbjct: 143 QHLGRVARRA 152
>pdb|1M1L|A Chain A, Human Suppressor Of Fused (N-Terminal Domain)
pdb|1M1L|B Chain B, Human Suppressor Of Fused (N-Terminal Domain)
pdb|1M1L|C Chain C, Human Suppressor Of Fused (N-Terminal Domain)
pdb|1M1L|D Chain D, Human Suppressor Of Fused (N-Terminal Domain)
Length = 236
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 197 PEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSI 236
P+ NP V A+ KY+L P+PL +Y + ++I
Sbjct: 20 PDQPNPLQVTAIVKYWLGG-PDPLDYVSMYRNVGSPSANI 58
>pdb|1RI6|A Chain A, Structure Of A Putative Isomerase From E. Coli
Length = 343
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 335 SAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVW 372
S L+DG+P+ G ++VV+ L H+A + N T+W
Sbjct: 109 SVTRLEDGLPV--GVVDVVEGLDGCHSANISPDNRTLW 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,278,208
Number of Sequences: 62578
Number of extensions: 396354
Number of successful extensions: 1132
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1095
Number of HSP's gapped (non-prelim): 31
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)