Query 017326
Match_columns 373
No_of_seqs 313 out of 1679
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 07:35:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017326.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017326hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4406 CDC42 Rho GTPase-activ 100.0 8E-50 1.7E-54 380.4 12.7 256 29-294 153-422 (467)
2 cd04390 RhoGAP_ARHGAP22_24_25 100.0 1.4E-44 3.1E-49 327.9 21.6 168 131-298 1-178 (199)
3 cd04372 RhoGAP_chimaerin RhoGA 100.0 1.8E-44 3.9E-49 325.9 21.6 160 133-294 1-169 (194)
4 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 8.9E-45 1.9E-49 333.3 18.6 212 130-369 2-219 (220)
5 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 1.3E-43 2.8E-48 325.5 21.3 196 132-369 1-210 (216)
6 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 2.7E-43 5.8E-48 322.6 22.0 191 133-369 1-212 (213)
7 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 1E-42 2.2E-47 316.7 22.1 162 130-293 2-171 (203)
8 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 2.3E-43 5E-48 319.9 17.7 182 133-318 1-200 (200)
9 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 7.3E-43 1.6E-47 312.3 19.8 156 133-289 1-164 (182)
10 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 1.3E-42 2.8E-47 313.3 21.2 157 132-293 1-163 (192)
11 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 8.5E-43 1.8E-47 314.8 18.9 185 131-318 1-195 (195)
12 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 2.4E-42 5.3E-47 312.4 20.5 165 129-293 2-171 (195)
13 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 8.4E-43 1.8E-47 317.1 17.4 183 133-318 1-203 (203)
14 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 3.8E-42 8.3E-47 312.4 21.3 158 132-292 1-165 (202)
15 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 1.1E-42 2.3E-47 317.9 17.5 183 133-318 1-211 (211)
16 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 4.1E-42 8.8E-47 308.8 20.3 160 133-294 1-168 (187)
17 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 7.6E-42 1.6E-46 310.9 21.0 181 147-369 6-205 (206)
18 cd04407 RhoGAP_myosin_IXB RhoG 100.0 9.5E-42 2.1E-46 305.8 20.8 157 133-292 1-163 (186)
19 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 5.1E-42 1.1E-46 312.0 18.2 162 133-294 1-174 (207)
20 cd04406 RhoGAP_myosin_IXA RhoG 100.0 9.2E-42 2E-46 305.9 19.6 177 133-316 1-184 (186)
21 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 1.4E-41 3.1E-46 309.5 20.2 182 133-369 1-201 (208)
22 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 1.8E-41 3.9E-46 306.9 20.2 164 132-296 1-173 (196)
23 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 2.3E-41 5E-46 305.3 20.4 159 133-293 1-170 (192)
24 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 7.6E-42 1.7E-46 307.0 16.8 171 131-303 1-180 (188)
25 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 1.8E-41 3.9E-46 312.7 19.6 161 132-293 1-201 (225)
26 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 7.6E-41 1.6E-45 301.4 19.5 159 132-290 1-173 (190)
27 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 1.2E-40 2.6E-45 299.8 20.5 162 131-292 1-169 (189)
28 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 1.5E-40 3.3E-45 298.0 20.6 160 133-295 1-167 (185)
29 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 6.8E-41 1.5E-45 302.4 18.2 161 133-295 1-169 (196)
30 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 1.1E-40 2.5E-45 299.1 18.9 165 133-298 1-171 (187)
31 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 7.6E-40 1.7E-44 299.0 19.5 159 133-293 1-184 (212)
32 cd04377 RhoGAP_myosin_IX RhoGA 100.0 2.6E-39 5.7E-44 290.3 20.9 158 133-293 1-164 (186)
33 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 1.9E-39 4.2E-44 291.8 19.3 148 145-293 10-166 (200)
34 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 5.4E-39 1.2E-43 289.4 19.7 149 146-295 13-167 (193)
35 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 1.6E-38 3.4E-43 284.8 20.2 157 134-293 2-166 (184)
36 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 8.1E-38 1.8E-42 283.6 18.1 146 149-294 27-184 (203)
37 KOG4407 Predicted Rho GTPase-a 100.0 3.1E-37 6.7E-42 321.6 11.6 195 130-329 1155-1360(1973)
38 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 1.4E-35 3.1E-40 272.8 14.8 168 126-295 6-199 (220)
39 KOG1451 Oligophrenin-1 and rel 100.0 5.9E-36 1.3E-40 294.0 7.9 286 37-371 247-574 (812)
40 smart00324 RhoGAP GTPase-activ 100.0 2.1E-33 4.6E-38 249.1 19.8 147 149-295 2-155 (174)
41 KOG2200 Tumour suppressor prot 100.0 1E-33 2.3E-38 279.2 15.4 162 129-292 297-466 (674)
42 cd00159 RhoGAP RhoGAP: GTPase- 100.0 8.4E-32 1.8E-36 236.9 19.3 143 151-293 1-149 (169)
43 KOG1450 Predicted Rho GTPase-a 100.0 1.9E-32 4.2E-37 277.1 15.3 164 128-293 452-623 (650)
44 KOG4269 Rac GTPase-activating 100.0 1.2E-32 2.6E-37 280.9 11.1 164 127-292 894-1071(1112)
45 KOG4270 GTPase-activator prote 100.0 4.8E-32 1E-36 273.6 10.9 194 128-324 142-344 (577)
46 PF00620 RhoGAP: RhoGAP domain 100.0 2E-31 4.3E-36 230.8 11.3 142 151-292 1-149 (151)
47 KOG2710 Rho GTPase-activating 100.0 2.1E-29 4.6E-34 245.5 15.9 142 148-289 92-254 (412)
48 KOG1453 Chimaerin and related 100.0 4.3E-30 9.2E-35 277.3 11.2 203 88-293 559-773 (918)
49 KOG1117 Rho- and Arf-GTPase ac 100.0 1.8E-28 4E-33 249.4 12.1 173 146-330 723-903 (1186)
50 KOG3564 GTPase-activating prot 100.0 5.2E-28 1.1E-32 233.6 14.5 206 86-295 298-512 (604)
51 KOG1452 Predicted Rho GTPase-a 99.9 5.6E-22 1.2E-26 183.7 12.9 162 129-292 181-354 (442)
52 KOG4724 Predicted Rho GTPase-a 99.8 8.7E-20 1.9E-24 183.0 8.7 198 126-373 76-279 (741)
53 KOG4271 Rho-GTPase activating 99.8 3.9E-20 8.5E-25 190.7 6.2 156 129-287 914-1076(1100)
54 cd04405 RhoGAP_BRCC3-like RhoG 99.8 8.5E-19 1.8E-23 158.7 14.1 182 131-369 20-233 (235)
55 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.8 7.9E-18 1.7E-22 150.9 14.1 144 150-293 6-168 (198)
56 KOG4370 Ral-GTPase effector RL 99.3 4.7E-12 1E-16 122.1 7.3 164 126-289 45-256 (514)
57 KOG3565 Cdc42-interacting prot 99.3 7.7E-12 1.7E-16 130.1 7.5 147 146-293 214-369 (640)
58 PF08101 DUF1708: Domain of un 98.8 8E-08 1.7E-12 95.7 13.2 145 149-293 7-170 (420)
59 PF13716 CRAL_TRIO_2: Divergen 98.3 4.5E-07 9.8E-12 78.0 2.8 74 23-106 66-144 (149)
60 KOG4724 Predicted Rho GTPase-a 98.1 1.3E-06 2.9E-11 89.1 2.9 160 129-292 413-591 (741)
61 KOG1453 Chimaerin and related 97.1 0.00036 7.7E-09 76.8 3.6 226 132-363 462-744 (918)
62 KOG1449 Predicted Rho GTPase-a 95.8 0.0021 4.5E-08 65.4 -0.2 75 258-332 1-79 (670)
63 cd00170 SEC14 Sec14p-like lipi 95.7 0.0059 1.3E-07 51.6 1.8 62 26-97 84-147 (157)
64 KOG1449 Predicted Rho GTPase-a 95.3 0.00094 2E-08 67.8 -4.8 180 128-330 205-393 (670)
65 smart00516 SEC14 Domain in hom 95.1 0.014 3.1E-07 49.9 2.4 62 24-95 80-144 (158)
66 KOG4271 Rho-GTPase activating 93.3 0.11 2.3E-06 56.1 4.8 141 148-288 369-536 (1100)
67 PF10928 DUF2810: Protein of u 52.4 6.2 0.00013 27.3 0.6 30 17-52 7-37 (54)
68 PF00650 CRAL_TRIO: CRAL/TRIO 52.1 10 0.00022 32.0 2.1 46 32-87 90-136 (159)
69 COG0292 RplT Ribosomal protein 51.9 14 0.00031 30.1 2.6 38 9-46 17-61 (118)
70 PF02724 CDC45: CDC45-like pro 39.2 16 0.00034 39.1 1.5 41 8-48 330-375 (622)
71 COG4835 Uncharacterized protei 30.1 44 0.00095 27.2 2.3 45 170-216 62-106 (124)
72 PF01418 HTH_6: Helix-turn-hel 28.4 1.1E+02 0.0025 22.8 4.3 40 236-281 4-43 (77)
73 PF04556 DpnII: DpnII restrict 28.2 36 0.00077 32.6 1.8 33 14-46 213-247 (286)
74 PF03471 CorC_HlyC: Transporte 28.0 87 0.0019 23.5 3.6 45 168-218 4-48 (81)
75 KOG4370 Ral-GTPase effector RL 27.7 2E+02 0.0043 29.2 6.8 33 200-232 118-150 (514)
76 PF12491 ApoB100_C: Apolipopro 27.2 2.4E+02 0.0052 20.2 5.9 27 239-266 24-51 (58)
77 KOG1471 Phosphatidylinositol t 25.2 54 0.0012 31.4 2.5 50 37-96 193-245 (317)
78 PF13606 Ank_3: Ankyrin repeat 24.6 40 0.00086 20.4 0.9 15 346-360 11-25 (30)
79 KOG1470 Phosphatidylinositol t 24.1 83 0.0018 30.7 3.5 73 13-96 158-231 (324)
80 PRK14101 bifunctional glucokin 23.4 1.7E+02 0.0037 31.3 6.1 41 234-280 342-382 (638)
81 PRK11020 hypothetical protein; 22.3 36 0.00078 27.8 0.5 30 17-52 70-100 (118)
82 cd07618 BAR_Rich1 The Bin/Amph 20.7 74 0.0016 29.9 2.3 32 108-139 210-245 (246)
No 1
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=8e-50 Score=380.38 Aligned_cols=256 Identities=24% Similarity=0.401 Sum_probs=226.8
Q ss_pred hhhhHhhHHHHhhHHHhh-hccchhHHHHHHHhcCCccccccchhhhhHhhhhcccccccccccchhhhcccchhh-HHH
Q 017326 29 QSVGEVAKDAKGNAADVA-ERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKVE-EAA 106 (373)
Q Consensus 29 ~~y~~~~r~~kknlk~ly-vhp~~~~Ks~~~~~q~~~~~~~~~~~~iS~kf~tkify~~~lselke~v~~~~~~~~-e~~ 106 (373)
++|.++||++|||+|++| |||+||+|..|.+++ ++||.||++|+.|.++++||.++++++++.++ ++.
T Consensus 153 ~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~k----------plIS~KF~rKi~Y~n~lseL~~~l~l~rL~lP~~v~ 222 (467)
T KOG4406|consen 153 DAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFK----------PLISLKFTRKIIYFNSLSELFEALKLNRLKLPPEVL 222 (467)
T ss_pred HHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHh----------hhcchhhhceeEEeehHHHHHHhhhhhhhcCChhhh
Confidence 459999999999999999 999999999999999 99999999999999999999999999999995 655
Q ss_pred HHhhhhc-----cchHhhHHHhhcCCCCCCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcC-CCCcCeEeecCCHHH
Q 017326 107 KKTAQKS-----KTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSG-LNSQFLFKAEGDKKV 180 (373)
Q Consensus 107 ~~~~~k~-----~~~~~~~~~~~~~~~~~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~g-l~~eGIFR~~g~~~~ 180 (373)
+...+-. ..-..+.....+...+++.||++|+.+......+..+|.+|..|+++|..+| +++||+||+|++.+.
T Consensus 223 ~~D~~~~s~~~~~a~~p~~~~~pr~pl~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~ 302 (467)
T KOG4406|consen 223 KHDDKLLSKAKTPAPPPEKMTPPRPPLPTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSP 302 (467)
T ss_pred hhhhcccccccCCCCCcccCCCCCCCCchhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccc
Confidence 4432211 1111112233445567789999999998776668899999999999999999 999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCChhhhHHHHHHHHHhCCCCCCchhhhHHHHhH-----HHHHHHHHHHHHh-ccHHHHHHH
Q 017326 181 IQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA-----RSSIHAMRNTLKK-LSNVNFMTL 254 (373)
Q Consensus 181 i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~LPePLl~~~ly~~~~~~-----~~~~~~l~~ll~~-LP~~n~~~L 254 (373)
+.++.+.+|+|.++++....|+|..|+++|.|||+||+||+++++|+.+... .++...++++++. ||++|+.++
T Consensus 303 i~~~q~~~n~G~pVdle~~~~~h~~avllKtF~R~LpePL~t~~~y~~lt~~~~~~~~~~s~s~~qli~~~lp~~ny~L~ 382 (467)
T KOG4406|consen 303 IREVQELYNTGEPVDLEVYKDLHAPAVLLKTFLRSLPEPLLTFRLYESLTGFSNVDKSLRSSSTDQLIRPTLPEENYSLL 382 (467)
T ss_pred hHHHHHHhcCCCcccHHHhccchhhHHHHHHHHhcCCcccchhhhhhhhhccccchHHhhhhHHHHHhhccCChhHHHHH
Confidence 9999999999999999766679999999999999999999999999998654 4567788999987 999999999
Q ss_pred HHHHHHHHHHHhccCcCCCChhhHHHhhhhcccCCCCCCh
Q 017326 255 EYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKP 294 (373)
Q Consensus 255 ~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~Ll~~~~~~~ 294 (373)
++++.||.+|++|+..|+||+.|||+||||+|+|++++..
T Consensus 383 r~i~sfL~~Is~~~~~N~M~~sNLa~vfGpnl~w~~~~s~ 422 (467)
T KOG4406|consen 383 RYISSFLVQISDNSKENKMTASNLAVVFGPNLLWAQDESL 422 (467)
T ss_pred HHHHHHHHHHHHhHHHhhhccccceeeecccccccccccc
Confidence 9999999999999999999999999999999999997654
No 2
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=1.4e-44 Score=327.92 Aligned_cols=168 Identities=27% Similarity=0.482 Sum_probs=153.1
Q ss_pred CcccCchhhHHhhhcC--CCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHH
Q 017326 131 DVFGVPIEVTVQRQQY--GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAAL 208 (373)
Q Consensus 131 ~vFG~~L~~l~~~~~~--~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~l 208 (373)
++||+||++++.+++. ...||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|...++....|+|+||++
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~l 80 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVASL 80 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHHH
Confidence 5899999999977632 35799999999999999999999999999999999999999999987776667899999999
Q ss_pred HHHHHHhCCCCCCchhhhHHHHhHH--------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHH
Q 017326 209 AKYYLASLPEPLTTFELYDEIKGAR--------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM 280 (373)
Q Consensus 209 LK~fLr~LPePLl~~~ly~~~~~~~--------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~ 280 (373)
||.|||+||+||+|.+.|+.|+.+. .++..++.++.+||+.|+.+|.||+.||++|++|++.||||++|||+
T Consensus 81 LK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 160 (199)
T cd04390 81 LKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLAT 160 (199)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHH
Confidence 9999999999999999999998752 35678899999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCChhHHH
Q 017326 281 EMAPVIMWQKERKPEFYR 298 (373)
Q Consensus 281 vf~P~Ll~~~~~~~~~~~ 298 (373)
||||+|+|++..++..+.
T Consensus 161 vf~P~llr~~~~~~~~~~ 178 (199)
T cd04390 161 VFGPNILRPKVEDPATIM 178 (199)
T ss_pred HhccccCCCCCCCHHHHH
Confidence 999999999987765433
No 3
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=1.8e-44 Score=325.94 Aligned_cols=160 Identities=23% Similarity=0.397 Sum_probs=147.0
Q ss_pred ccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCC-CCCC--CCCChhhhHHHH
Q 017326 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-ASLP--EGVNPFDVAALA 209 (373)
Q Consensus 133 FG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~-~~~~--~~~d~~~va~lL 209 (373)
||+||+.+++++ +..||.+|.+|++||+++|+++|||||++|+.++++++++.+|+++. .++. ...|+|+||++|
T Consensus 1 FG~~L~~~~~~~--~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL 78 (194)
T cd04372 1 YGCDLTTLVKAH--NTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGAL 78 (194)
T ss_pred CCCChHHHHHHc--CCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHH
Confidence 999999999986 45899999999999999999999999999999999999999997543 4432 235899999999
Q ss_pred HHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhh
Q 017326 210 KYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMA 283 (373)
Q Consensus 210 K~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~ 283 (373)
|.|||+||+||+|.++|+.|+++ .+++..++.++.+||+.|+.+|+||+.||++|+++++.||||+.|||+|||
T Consensus 79 K~flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~ 158 (194)
T cd04372 79 KLYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFG 158 (194)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHh
Confidence 99999999999999999999886 357889999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCh
Q 017326 284 PVIMWQKERKP 294 (373)
Q Consensus 284 P~Ll~~~~~~~ 294 (373)
|+|+++++.+.
T Consensus 159 P~Ll~~~~~~~ 169 (194)
T cd04372 159 PTLMRPPEDSA 169 (194)
T ss_pred cccCCCCCccH
Confidence 99999987654
No 4
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.9e-45 Score=333.34 Aligned_cols=212 Identities=27% Similarity=0.376 Sum_probs=173.3
Q ss_pred CCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHH
Q 017326 130 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALA 209 (373)
Q Consensus 130 ~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lL 209 (373)
+++||+||+.++++. +..||.+|.+|++||+.+|+++|||||++|+..++++|++.+|.+.+....+..++|+||++|
T Consensus 2 ~~vFGvpL~~~~~r~--g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lL 79 (220)
T cd04375 2 KNVFGVPLLVNLQRT--GQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVADML 79 (220)
T ss_pred CCEecCcHHHHHhhc--CCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHHHH
Confidence 468999999998875 568999999999999999999999999999999999999999987655444568999999999
Q ss_pred HHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhh
Q 017326 210 KYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMA 283 (373)
Q Consensus 210 K~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~ 283 (373)
|.|||+||+||+|+++|+.|+++ .+++++++.++.+||++|+.+|++|+.||++|++|++.||||++|||+|||
T Consensus 80 K~flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfa 159 (220)
T cd04375 80 KQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLA 159 (220)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHh
Confidence 99999999999999999999876 457889999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCChhHHHHHhhhhhccccccccCCCCCCccccccchhhhhhcccCCCCCCCCCCccchhHHHHHHHHhhhhh
Q 017326 284 PVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAI 363 (373)
Q Consensus 284 P~Ll~~~~~~~~~~~~~~~~~~~~~~~~ve~li~~~~~~f~~d~~~~~~~~s~~p~~~~~~~~~~~~~vv~~LIe~~~~I 363 (373)
|+||+....+........ |.+.. ...-.|.....+-...+.++|.+||+||+.|
T Consensus 160 P~L~~~~~~~~~~~~~~~-------------------~~~~~-------~~~~~~~~~~l~e~~~~~~~v~~lI~~~~~l 213 (220)
T cd04375 160 PSLFHLNTSRRENSSPAR-------------------RMQRK-------KSLGKPDQKELSENKAAHQCLAYMIEECNTL 213 (220)
T ss_pred hhhcCCCCCCcccccchh-------------------hhccc-------cccCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999866532111000 00000 0000000000111235678999999999999
Q ss_pred cCCCCc
Q 017326 364 FTDANE 369 (373)
Q Consensus 364 F~~~~~ 369 (373)
|.+|.|
T Consensus 214 f~vp~~ 219 (220)
T cd04375 214 FMVPKE 219 (220)
T ss_pred hcCCCC
Confidence 999876
No 5
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.3e-43 Score=325.45 Aligned_cols=196 Identities=24% Similarity=0.357 Sum_probs=169.2
Q ss_pred cccCchhhHHhhhc---CCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCC--CCCCCCChhhhH
Q 017326 132 VFGVPIEVTVQRQQ---YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA--SLPEGVNPFDVA 206 (373)
Q Consensus 132 vFG~~L~~l~~~~~---~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~--~~~~~~d~~~va 206 (373)
|||+||++++++++ .+..||.+|.+|+++|+++|+++|||||++|+.+++++|++.+|.+... ...+..|+|++|
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va 80 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAA 80 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHH
Confidence 69999999998864 3578999999999999999999999999999999999999999976322 223458999999
Q ss_pred HHHHHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHH
Q 017326 207 ALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM 280 (373)
Q Consensus 207 ~lLK~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~ 280 (373)
++||.|||+||+||+|.++|+.|+++ .+++..++.++.+||+.|+.+|+||+.||++|++|++.||||++|||+
T Consensus 81 ~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 160 (216)
T cd04391 81 SLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAM 160 (216)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHHH
Confidence 99999999999999999999999876 346788999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCChhH---HHHHhhhhhccccccccCCCCCCccccccchhhhhhcccCCCCCCCCCCccchhHHHHHHH
Q 017326 281 EMAPVIMWQKERKPEF---YRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLM 357 (373)
Q Consensus 281 vf~P~Ll~~~~~~~~~---~~~~~~~~~~~~~~~ve~li~~~~~~f~~d~~~~~~~~s~~p~~~~~~~~~~~~~vv~~LI 357 (373)
||||+||++...++.+ .+..++.. .....+++.||
T Consensus 161 vfaP~l~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~iv~~lI 198 (216)
T cd04391 161 IMAPNLFPPRGKHSKDNESLQEEVNMA------------------------------------------AGCANIMRLLI 198 (216)
T ss_pred HhccccCCCCCCCCCcchhHHHHHHHH------------------------------------------HHHHHHHHHHH
Confidence 9999999998765422 22222211 12346999999
Q ss_pred HhhhhhcCCCCc
Q 017326 358 EQHNAIFTDANE 369 (373)
Q Consensus 358 e~~~~IF~~~~~ 369 (373)
+|++.||++|++
T Consensus 199 ~~~~~if~~p~~ 210 (216)
T cd04391 199 RYQDLLWTVPSF 210 (216)
T ss_pred HhHHHHhcCCHH
Confidence 999999999864
No 6
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.7e-43 Score=322.56 Aligned_cols=191 Identities=26% Similarity=0.380 Sum_probs=165.7
Q ss_pred ccCchhhHHhhhcC---------CCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCC-CCCCCCh
Q 017326 133 FGVPIEVTVQRQQY---------GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS-LPEGVNP 202 (373)
Q Consensus 133 FG~~L~~l~~~~~~---------~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~-~~~~~d~ 202 (373)
||+||+.++++++. ...||.+|.+|++||+++|+++|||||++|+..+++++++.+|++.... .....|+
T Consensus 1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~ 80 (213)
T cd04397 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENP 80 (213)
T ss_pred CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcH
Confidence 99999999999754 1369999999999999999999999999999999999999999876432 2245799
Q ss_pred hhhHHHHHHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccC-----cC
Q 017326 203 FDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSL-----LN 271 (373)
Q Consensus 203 ~~va~lLK~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~-----~N 271 (373)
|++|++||.|||+||+||+|.++|+.|+++ .++...++.++.+||+.|+.+|++|+.||++|+.++. .|
T Consensus 81 ~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~N 160 (213)
T cd04397 81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGS 160 (213)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Confidence 999999999999999999999999999886 3467788899999999999999999999999998765 59
Q ss_pred CCChhhHHHhhhhcccCCCCCChhHHHHHhhhhhccccccccCCCCCCccccccchhhhhhcccCCCCCCCCCCccchhH
Q 017326 272 KMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIE 351 (373)
Q Consensus 272 kM~~~nLA~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~ve~li~~~~~~f~~d~~~~~~~~s~~p~~~~~~~~~~~~~ 351 (373)
|||++|||+||||||++++..+...... ....++
T Consensus 161 kM~~~NLAivf~P~Ll~~~~~~~~~~~~----------------------------------------------~~~~~~ 194 (213)
T cd04397 161 KMDIHNLATVITPNILYSKTDNPNTGDE----------------------------------------------YFLAIE 194 (213)
T ss_pred cCChHHhHHhhcccccCCCCCCcchHHH----------------------------------------------HHHHHH
Confidence 9999999999999999998765221110 113456
Q ss_pred HHHHHHHhhhhhcCCCCc
Q 017326 352 VVQCLMEQHNAIFTDANE 369 (373)
Q Consensus 352 vv~~LIe~~~~IF~~~~~ 369 (373)
+|++||+||+.||.+|++
T Consensus 195 vv~~LI~n~~~if~vp~~ 212 (213)
T cd04397 195 AVNYLIENNEEFCEVPDE 212 (213)
T ss_pred HHHHHHHhHHHHhcCCCC
Confidence 999999999999999986
No 7
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1e-42 Score=316.70 Aligned_cols=162 Identities=30% Similarity=0.501 Sum_probs=149.3
Q ss_pred CCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCC--CCCCCChhhhHH
Q 017326 130 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS--LPEGVNPFDVAA 207 (373)
Q Consensus 130 ~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~--~~~~~d~~~va~ 207 (373)
+++||+||+++++++ +..||.+|.+|+.||+++|+++|||||++|+..+++.+++.+|.|.... .....|+|++|+
T Consensus 2 ~~~FG~~L~~~~~~~--~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~ 79 (203)
T cd04386 2 KPVFGTPLEEHLKRT--GREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVAS 79 (203)
T ss_pred CCcCCCCHHHHHHHc--CCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHH
Confidence 578999999999875 5689999999999999999999999999999999999999999987543 223479999999
Q ss_pred HHHHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHh
Q 017326 208 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME 281 (373)
Q Consensus 208 lLK~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~v 281 (373)
+||.|||+||+||+|.++|+.|+++ .+++..++.++.+||+.|+.+|++|+.||++|++|++.|+||++|||+|
T Consensus 80 ~lK~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~ 159 (203)
T cd04386 80 ALKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIV 159 (203)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHH
Confidence 9999999999999999999999886 3577899999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCC
Q 017326 282 MAPVIMWQKERK 293 (373)
Q Consensus 282 f~P~Ll~~~~~~ 293 (373)
|||+|+|++.++
T Consensus 160 faP~ll~~~~~~ 171 (203)
T cd04386 160 LAPNLLWAKNEG 171 (203)
T ss_pred hccccCCCCCCC
Confidence 999999998765
No 8
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.3e-43 Score=319.89 Aligned_cols=182 Identities=23% Similarity=0.374 Sum_probs=161.9
Q ss_pred ccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHH
Q 017326 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 212 (373)
Q Consensus 133 FG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~f 212 (373)
||+||+.++++. ++.||.+|.+|++||+++|+++|||||++|+..++++|++.+|+|.+....+..|||+||++||.|
T Consensus 1 FGv~l~~l~~~~--~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~f 78 (200)
T cd04408 1 FGVDFSQLPRDF--PEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHF 78 (200)
T ss_pred CCCCHHHHHHhC--CCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHHH
Confidence 999999999875 679999999999999999999999999999999999999999998765434568999999999999
Q ss_pred HHhCCCCCCchhhhHHHHhHH------------------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCC
Q 017326 213 LASLPEPLTTFELYDEIKGAR------------------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMD 274 (373)
Q Consensus 213 Lr~LPePLl~~~ly~~~~~~~------------------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~ 274 (373)
||+||+||+|+++|+.|+++. +++..++.++.+||+.|+.||+||+.||++|+++++.|+||
T Consensus 79 LReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~ 158 (200)
T cd04408 79 LKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKMS 158 (200)
T ss_pred HHhCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhccCCC
Confidence 999999999999999998752 35788999999999999999999999999999999999999
Q ss_pred hhhHHHhhhhcccCCCCCChhHHHHHhhhhhccccccccCCCCC
Q 017326 275 ARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPH 318 (373)
Q Consensus 275 ~~nLA~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~ve~li~~ 318 (373)
++|||+||||+|++++..+..++....+ .+.++.+||.||.|
T Consensus 159 ~~NLAivf~P~Ll~~~~~~~~~~~~~~~--~~~q~~~ve~li~~ 200 (200)
T cd04408 159 PNNLGIVFGPTLLRPLVGGDVSMICLLD--TGYQAQLVEFLISN 200 (200)
T ss_pred HhHhhhhhccccCCCCCCCchHHHHHhc--cchHHHHHHHHhhC
Confidence 9999999999999999776544443332 45678888888754
No 9
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=7.3e-43 Score=312.26 Aligned_cols=156 Identities=28% Similarity=0.492 Sum_probs=145.8
Q ss_pred ccCchhhHHhhhc--CCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHH
Q 017326 133 FGVPIEVTVQRQQ--YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAK 210 (373)
Q Consensus 133 FG~~L~~l~~~~~--~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK 210 (373)
||+||++++++++ .+..||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|...++. ++|+|+||++||
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~~-~~d~h~va~lLK 79 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLE-EYEPPTVASLLK 79 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCcc-ccChHHHHHHHH
Confidence 9999999998864 3568999999999999999999999999999999999999999999887764 589999999999
Q ss_pred HHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhh
Q 017326 211 YYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAP 284 (373)
Q Consensus 211 ~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P 284 (373)
.|||+||+||+|.++|+.|.++ .+++..++.++.+||+.|+.+|++|+.||.+|++|++.|+||++|||+||||
T Consensus 80 ~fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 159 (182)
T cd04381 80 QYLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSP 159 (182)
T ss_pred HHHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCc
Confidence 9999999999999999999876 3578899999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 017326 285 VIMWQ 289 (373)
Q Consensus 285 ~Ll~~ 289 (373)
+|+.+
T Consensus 160 ~l~~~ 164 (182)
T cd04381 160 TVQIS 164 (182)
T ss_pred cccCc
Confidence 99744
No 10
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.3e-42 Score=313.34 Aligned_cols=157 Identities=25% Similarity=0.424 Sum_probs=148.1
Q ss_pred cccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHH
Q 017326 132 VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKY 211 (373)
Q Consensus 132 vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~ 211 (373)
+||+||+.+++ +..||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|...++ +.+|+|++|++||.
T Consensus 1 ~FG~~L~~~~~----~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~-~~~~~~~va~~lK~ 75 (192)
T cd04402 1 LFGQPLSNICE----DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDL-KAEPVLLLASVLKD 75 (192)
T ss_pred CCCCcHHHHhC----CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCC-ccCCHHHHHHHHHH
Confidence 69999999987 46899999999999999999999999999999999999999999987776 56899999999999
Q ss_pred HHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhc
Q 017326 212 YLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPV 285 (373)
Q Consensus 212 fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~ 285 (373)
|||+||+||+|.+.|+.++++ .+++..++.++.+||..|+.+|.||+.||++|+.+++.|+||++|||+||||+
T Consensus 76 flreLpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~ 155 (192)
T cd04402 76 FLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPS 155 (192)
T ss_pred HHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhcccc
Confidence 999999999999999999876 34788999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 017326 286 IMWQKERK 293 (373)
Q Consensus 286 Ll~~~~~~ 293 (373)
|++++...
T Consensus 156 l~~~~~~~ 163 (192)
T cd04402 156 LLWPPASS 163 (192)
T ss_pred ccCCCCcc
Confidence 99999765
No 11
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.5e-43 Score=314.85 Aligned_cols=185 Identities=23% Similarity=0.425 Sum_probs=161.3
Q ss_pred CcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCC---CCCChhhhHH
Q 017326 131 DVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLP---EGVNPFDVAA 207 (373)
Q Consensus 131 ~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~---~~~d~~~va~ 207 (373)
++||++|++++.++ +..||.+|.+|++||+++|+ +|||||++|+.++++++++.+|+|...++. ...|+|+||+
T Consensus 1 ~vFG~~L~~~~~~~--g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~ 77 (195)
T cd04384 1 RVFGCDLTEHLLNS--GQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSS 77 (195)
T ss_pred CcCCccHHHHHHHc--CCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHH
Confidence 48999999999875 57999999999999999999 599999999999999999999999766543 2469999999
Q ss_pred HHHHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHh
Q 017326 208 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME 281 (373)
Q Consensus 208 lLK~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~v 281 (373)
+||.|||+||+||+|+++|+.|+++ .++++.++.++.+||+.|+.+|++|+.||++|+++++.||||++|||+|
T Consensus 78 lLK~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAiv 157 (195)
T cd04384 78 LCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIV 157 (195)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHh
Confidence 9999999999999999999999876 3578889999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCChhHHH-HHhhhhhccccccccCCCCC
Q 017326 282 MAPVIMWQKERKPEFYR-QYWNHASRSSSKNMEPATPH 318 (373)
Q Consensus 282 f~P~Ll~~~~~~~~~~~-~~~~~~~~~~~~~ve~li~~ 318 (373)
|||+|+++++....+.. ...-...+.+..++|++|.|
T Consensus 158 f~P~L~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~~ 195 (195)
T cd04384 158 WAPNLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNH 195 (195)
T ss_pred hhhhcCCCCccccccchHHHHHHHHhhhhhheehhhcC
Confidence 99999999865543211 11222345678889998875
No 12
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.4e-42 Score=312.39 Aligned_cols=165 Identities=27% Similarity=0.530 Sum_probs=153.0
Q ss_pred CCCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHH
Q 017326 129 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAAL 208 (373)
Q Consensus 129 ~~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~l 208 (373)
++.+||+||+.++++.+.+..||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|...++....|+|++|++
T Consensus 2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~~ 81 (195)
T cd04404 2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPAVI 81 (195)
T ss_pred CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHHHH
Confidence 46799999999998765557999999999999999999999999999999999999999999987776544599999999
Q ss_pred HHHHHHhCCCCCCchhhhHHHHhH-----HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhh
Q 017326 209 AKYYLASLPEPLTTFELYDEIKGA-----RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMA 283 (373)
Q Consensus 209 LK~fLr~LPePLl~~~ly~~~~~~-----~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~ 283 (373)
||.|||+||+||+|.++|+.+.++ .+++..++.++++||+.|+.+|.+|+.||++|++|++.|+||++|||+|||
T Consensus 82 LK~~lr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~vfa 161 (195)
T cd04404 82 LKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFG 161 (195)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhheeee
Confidence 999999999999999999999875 356789999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCC
Q 017326 284 PVIMWQKERK 293 (373)
Q Consensus 284 P~Ll~~~~~~ 293 (373)
|+|+|+++..
T Consensus 162 P~l~~~~~~~ 171 (195)
T cd04404 162 PNLLWAKDAS 171 (195)
T ss_pred ccccCCCCcc
Confidence 9999998664
No 13
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=8.4e-43 Score=317.10 Aligned_cols=183 Identities=22% Similarity=0.392 Sum_probs=161.7
Q ss_pred ccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHH
Q 017326 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 212 (373)
Q Consensus 133 FG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~f 212 (373)
||+||+.++++. ++.||.+|.+|+++|+++|+++|||||++|+..+++++++.+|+|.+....++.|+|++|++||.|
T Consensus 1 FG~~L~~~~~~~--~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK~f 78 (203)
T cd04378 1 FGVDFSQVPRDF--PDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLKLF 78 (203)
T ss_pred CCCChHHHHHHC--CCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 999999999885 568999999999999999999999999999999999999999998765444568999999999999
Q ss_pred HHhCCCCCCchhhhHHHHhHH--------------------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCC
Q 017326 213 LASLPEPLTTFELYDEIKGAR--------------------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNK 272 (373)
Q Consensus 213 Lr~LPePLl~~~ly~~~~~~~--------------------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~Nk 272 (373)
||+||+||+|+++|+.|+++. +++..++.++.+||+.|+.+|.||+.||++|++|++.||
T Consensus 79 LReLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~Nk 158 (203)
T cd04378 79 LRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEENK 158 (203)
T ss_pred HHhCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999998763 246789999999999999999999999999999999999
Q ss_pred CChhhHHHhhhhcccCCCCCChhHHHHHhhhhhccccccccCCCCC
Q 017326 273 MDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPH 318 (373)
Q Consensus 273 M~~~nLA~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~ve~li~~ 318 (373)
|+++|||+||||+|++++..+.....+.+.+ .+++..+||.||.|
T Consensus 159 M~~~NLaivf~P~Ll~~~~~~~~~~~~~l~~-~~~q~~~ve~li~~ 203 (203)
T cd04378 159 MSPNNLGIVFGPTLIRPRPGDADVSLSSLVD-YGYQARLVEFLITN 203 (203)
T ss_pred CCHHHhhhhhccccCCCCCCCcchhHHHHHh-hhhhHHHHHHHhhC
Confidence 9999999999999999998754322222333 36788899988864
No 14
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.8e-42 Score=312.37 Aligned_cols=158 Identities=28% Similarity=0.389 Sum_probs=143.7
Q ss_pred cccCchhhHHhhhc-CCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHH
Q 017326 132 VFGVPIEVTVQRQQ-YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAK 210 (373)
Q Consensus 132 vFG~~L~~l~~~~~-~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK 210 (373)
+||+||++++.+.. .+..||.+|.+|++||++ |+++|||||++|+..+++++++.+|+|.... ...++|+||++||
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~--~~~~~~~vaslLK 77 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACL--SSALPCDVAGLLK 77 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc--cccCHHHHHHHHH
Confidence 69999999986532 356999999999999986 6999999999999999999999999987653 3478999999999
Q ss_pred HHHHhCCCCCCchhhhHHHHhHH------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhh
Q 017326 211 YYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAP 284 (373)
Q Consensus 211 ~fLr~LPePLl~~~ly~~~~~~~------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P 284 (373)
.|||+||+||+|.++|+.|+++. ++...++.++.+||+.|+.+|+||+.||++|++|++.||||++|||+||||
T Consensus 78 ~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP 157 (202)
T cd04394 78 QFFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAP 157 (202)
T ss_pred HHHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcc
Confidence 99999999999999999998863 456778889999999999999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 017326 285 VIMWQKER 292 (373)
Q Consensus 285 ~Ll~~~~~ 292 (373)
+|+++++.
T Consensus 158 ~L~~~~~~ 165 (202)
T cd04394 158 NLFQSEEG 165 (202)
T ss_pred eeecCCCc
Confidence 99998854
No 15
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-42 Score=317.91 Aligned_cols=183 Identities=22% Similarity=0.403 Sum_probs=159.2
Q ss_pred ccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHH
Q 017326 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 212 (373)
Q Consensus 133 FG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~f 212 (373)
||+||+++++++ ++.||.+|.+|+++|+++|+++|||||++|+..++++|++.+|+|.+....++.|+|++|++||.|
T Consensus 1 FG~~L~~~~~~~--~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK~f 78 (211)
T cd04409 1 FGADFAQVAKKS--PDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLKLY 78 (211)
T ss_pred CCCChHHHHHhC--CCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHHHH
Confidence 999999999885 568999999999999999999999999999999999999999998765444568999999999999
Q ss_pred HHhCCCCCCchhhhHHHHhHHH----------------------------HHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 017326 213 LASLPEPLTTFELYDEIKGARS----------------------------SIHAMRNTLKKLSNVNFMTLEYVTALLLRV 264 (373)
Q Consensus 213 Lr~LPePLl~~~ly~~~~~~~~----------------------------~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V 264 (373)
||+||+||+|+++|+.|+++.. .+..++.++.+||+.|+.+|+||+.||++|
T Consensus 79 LReLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V 158 (211)
T cd04409 79 LRQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRV 158 (211)
T ss_pred HHhCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987531 245789999999999999999999999999
Q ss_pred HhccCcCCCChhhHHHhhhhcccCCCCCChhHHHHHhhhhhccccccccCCCCC
Q 017326 265 SQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPH 318 (373)
Q Consensus 265 ~~~s~~NkM~~~nLA~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~ve~li~~ 318 (373)
++|++.|+||++|||+||||+|++++..+.......+.+ ..+++++||.||.|
T Consensus 159 ~~~s~~NkM~~~NLAivf~P~Llrp~~~~~~~~~~~~~~-~~~~~~~ve~li~~ 211 (211)
T cd04409 159 SEQAEENKMSASNLGIIFGPTLIRPRPTDATVSLSSLVD-YPHQARLVELLITY 211 (211)
T ss_pred HcccccCCCChHHhhhhccccccCCCCCCcchhHHHHhh-hhhHHHHHHHHhhC
Confidence 999999999999999999999999987664322222222 24477788888854
No 16
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.1e-42 Score=308.81 Aligned_cols=160 Identities=24% Similarity=0.435 Sum_probs=149.0
Q ss_pred ccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCC--CCCChhhhHHHHH
Q 017326 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLP--EGVNPFDVAALAK 210 (373)
Q Consensus 133 FG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~--~~~d~~~va~lLK 210 (373)
||+||+++++++ +..||.+|.+|++||+++|+++|||||++|+.+.+++|+..+|.+...++. +..|+|++|++||
T Consensus 1 FGv~L~~~~~~~--~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK 78 (187)
T cd04403 1 FGCHLEALCQRE--NSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALK 78 (187)
T ss_pred CCCChHHHHHHc--CCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHH
Confidence 999999999885 568999999999999999999999999999999999999999998775542 3579999999999
Q ss_pred HHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhh
Q 017326 211 YYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAP 284 (373)
Q Consensus 211 ~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P 284 (373)
.|||+||+||+|+++|+.|+++ .+++..++.++.+||+.|+.+|+||+.||++|+++++.||||+.|||+||||
T Consensus 79 ~fLReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P 158 (187)
T cd04403 79 LFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGP 158 (187)
T ss_pred HHHhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhccc
Confidence 9999999999999999999876 3578899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCh
Q 017326 285 VIMWQKERKP 294 (373)
Q Consensus 285 ~Ll~~~~~~~ 294 (373)
+|+|++.++.
T Consensus 159 ~ll~~~~~~~ 168 (187)
T cd04403 159 TLLRPEQETG 168 (187)
T ss_pred cccCCCCcch
Confidence 9999987764
No 17
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.6e-42 Score=310.94 Aligned_cols=181 Identities=24% Similarity=0.386 Sum_probs=159.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHHHHhCCCCCCchhhh
Q 017326 147 GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELY 226 (373)
Q Consensus 147 ~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~LPePLl~~~ly 226 (373)
.+.||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|....+.+..|+|+||++||.|||+||+||+|+++|
T Consensus 6 ~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~y 85 (206)
T cd04376 6 ARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRELY 85 (206)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 56899999999999999999999999999999999999999999988877667899999999999999999999999999
Q ss_pred HHHHhH-----HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccC-----------cCCCChhhHHHhhhhcccCCC
Q 017326 227 DEIKGA-----RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSL-----------LNKMDARSLAMEMAPVIMWQK 290 (373)
Q Consensus 227 ~~~~~~-----~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~-----------~NkM~~~nLA~vf~P~Ll~~~ 290 (373)
+.|+++ .+++..++.++.+||+.|+.+|.||+.||++|++|++ .||||++|||+||||+|+|++
T Consensus 86 ~~~i~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~~~ 165 (206)
T cd04376 86 TAFIGTALLEPDEQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLHKQ 165 (206)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccCCC
Confidence 999886 3578899999999999999999999999999999986 799999999999999999998
Q ss_pred CCChhHH---HHHhhhhhccccccccCCCCCCccccccchhhhhhcccCCCCCCCCCCccchhHHHHHHHHhhhhhcCCC
Q 017326 291 ERKPEFY---RQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDA 367 (373)
Q Consensus 291 ~~~~~~~---~~~~~~~~~~~~~~ve~li~~~~~~f~~d~~~~~~~~s~~p~~~~~~~~~~~~~vv~~LIe~~~~IF~~~ 367 (373)
..+.... ...+.+ ....+.+|+.||+||+.||.++
T Consensus 166 ~~~~~~~~~~~~~~~~------------------------------------------~~~~~~vv~~LI~~~~~iF~~~ 203 (206)
T cd04376 166 KSGEREFVQASLRIEE------------------------------------------STAIINVVQTMIDNYEELFMVS 203 (206)
T ss_pred CCcccccchhhhhHHH------------------------------------------HHHHHHHHHHHHHhHHHHcCCC
Confidence 7653211 101110 1133459999999999999999
Q ss_pred Cc
Q 017326 368 NE 369 (373)
Q Consensus 368 ~~ 369 (373)
+|
T Consensus 204 ~~ 205 (206)
T cd04376 204 PE 205 (206)
T ss_pred CC
Confidence 86
No 18
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=9.5e-42 Score=305.81 Aligned_cols=157 Identities=26% Similarity=0.443 Sum_probs=145.1
Q ss_pred ccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHH
Q 017326 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 212 (373)
Q Consensus 133 FG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~f 212 (373)
||+||+.++. .+..||.+|.+|++||+++|+++|||||++|+..+++++++.+|.|......+++|+|+||++||.|
T Consensus 1 FGv~L~~~~~---~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~f 77 (186)
T cd04407 1 FGVRVGSLTS---NKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQW 77 (186)
T ss_pred CCCcHHHHHh---CCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHH
Confidence 9999999975 3579999999999999999999999999999999999999999988654334568999999999999
Q ss_pred HHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhcc
Q 017326 213 LASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVI 286 (373)
Q Consensus 213 Lr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~L 286 (373)
||+||+||+|+++|+.|+.+ .+++..++.++.+||+.|+.+|++|+.||++|+++++.||||++|||+||||||
T Consensus 78 lReLPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~L 157 (186)
T cd04407 78 LRELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCL 157 (186)
T ss_pred HHhCCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccc
Confidence 99999999999999999876 346888999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 017326 287 MWQKER 292 (373)
Q Consensus 287 l~~~~~ 292 (373)
+|+++.
T Consensus 158 l~~~~~ 163 (186)
T cd04407 158 LRCPDS 163 (186)
T ss_pred cCCCCC
Confidence 998753
No 19
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.1e-42 Score=311.97 Aligned_cols=162 Identities=27% Similarity=0.364 Sum_probs=147.2
Q ss_pred ccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCC-CCCC--CCCChhhhHHHH
Q 017326 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-ASLP--EGVNPFDVAALA 209 (373)
Q Consensus 133 FG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~-~~~~--~~~d~~~va~lL 209 (373)
||+||+.++++++.+..||.+|.+|++||+++|+++|||||++|+..+++.|++.+|++.. .++. ...|+|+||++|
T Consensus 1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL 80 (207)
T cd04379 1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL 80 (207)
T ss_pred CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence 9999999999876678999999999999999999999999999999999999999998753 3332 235899999999
Q ss_pred HHHHHhCCCCCCchhhhHHHHhHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHH
Q 017326 210 KYYLASLPEPLTTFELYDEIKGAR---------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM 280 (373)
Q Consensus 210 K~fLr~LPePLl~~~ly~~~~~~~---------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~ 280 (373)
|.|||+||+||+|.++|+.|+++. .....++.++.+||+.|+.+|+||+.||++|++|++.||||+.|||+
T Consensus 81 K~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLAi 160 (207)
T cd04379 81 KDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAV 160 (207)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhHH
Confidence 999999999999999999998762 13456888999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCCh
Q 017326 281 EMAPVIMWQKERKP 294 (373)
Q Consensus 281 vf~P~Ll~~~~~~~ 294 (373)
||||+||++++.+.
T Consensus 161 vf~P~Ll~~~~~~~ 174 (207)
T cd04379 161 CFGPVLMFCSQEFS 174 (207)
T ss_pred hhccccCCCCcccc
Confidence 99999999997763
No 20
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=9.2e-42 Score=305.89 Aligned_cols=177 Identities=28% Similarity=0.451 Sum_probs=154.8
Q ss_pred ccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHH
Q 017326 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 212 (373)
Q Consensus 133 FG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~f 212 (373)
||+||+.++.. ++.||.+|.+|++||+++|+++|||||++|+.+++++|++.+|.+......+.+|+|+||++||.|
T Consensus 1 FGv~L~~l~~~---~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~f 77 (186)
T cd04406 1 FGVELSRLTSE---DRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQW 77 (186)
T ss_pred CCCchHHHHHC---CCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHHH
Confidence 99999998753 468999999999999999999999999999999999999999987654434568999999999999
Q ss_pred HHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhcc
Q 017326 213 LASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVI 286 (373)
Q Consensus 213 Lr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~L 286 (373)
||+||+||+|.++|+.|+++ .+++..++.++.+||+.|+.+|.+|+.||++|++|++.|+||++|||+||||+|
T Consensus 78 LReLPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~l 157 (186)
T cd04406 78 LRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCI 157 (186)
T ss_pred HHhCCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccc
Confidence 99999999999999999877 346778899999999999999999999999999999999999999999999999
Q ss_pred cCCCCC-ChhHHHHHhhhhhccccccccCCC
Q 017326 287 MWQKER-KPEFYRQYWNHASRSSSKNMEPAT 316 (373)
Q Consensus 287 l~~~~~-~~~~~~~~~~~~~~~~~~~ve~li 316 (373)
+|+++. ++. +.++++. ++..+||.+|
T Consensus 158 l~~p~~~d~~---~~~~~~~-~~~~~~~~~~ 184 (186)
T cd04406 158 LRCPDTTDPL---QSVQDIS-KTTTCVELIV 184 (186)
T ss_pred cCCCCCCCHH---HHHHHHh-hccchhhhhc
Confidence 998764 332 2333333 3667777765
No 21
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.4e-41 Score=309.53 Aligned_cols=182 Identities=24% Similarity=0.356 Sum_probs=158.2
Q ss_pred ccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCC-CCChhhhHHHHHH
Q 017326 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE-GVNPFDVAALAKY 211 (373)
Q Consensus 133 FG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~-~~d~~~va~lLK~ 211 (373)
||.+|.+ .+++ .|.+|++||++ |+++|||||++|+.+++++|++.+|+|...++.. ++|+|+||++||.
T Consensus 1 ~~~~~~~--------~~~~-~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~ 70 (208)
T cd04392 1 FGAPLTE--------EGIA-QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKG 70 (208)
T ss_pred CCCCccc--------cccH-HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHH
Confidence 7887763 2344 67899999998 9999999999999999999999999998877643 5799999999999
Q ss_pred HHHhCCCCCCchhhhHHHHhHH------------------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCC
Q 017326 212 YLASLPEPLTTFELYDEIKGAR------------------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKM 273 (373)
Q Consensus 212 fLr~LPePLl~~~ly~~~~~~~------------------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 273 (373)
|||+||+||+|.++|+.|+++. .++..++.++.+||++|+.+|++|+.||++|++|++.|||
T Consensus 71 flReLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 150 (208)
T cd04392 71 FLGELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKM 150 (208)
T ss_pred HHHhCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 9999999999999999986542 2467888999999999999999999999999999999999
Q ss_pred ChhhHHHhhhhcccCCCCCChhHHHHHhhhhhccccccccCCCCCCccccccchhhhhhcccCCCCCCCCCCccchhHHH
Q 017326 274 DARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVV 353 (373)
Q Consensus 274 ~~~nLA~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~ve~li~~~~~~f~~d~~~~~~~~s~~p~~~~~~~~~~~~~vv 353 (373)
|+.|||+||||+|+++++.++..+..... ...++|
T Consensus 151 ~~~NLAivf~P~Ll~~~~~~~~~~~~~~~---------------------------------------------~~~~iv 185 (208)
T cd04392 151 SADNLALLFTPHLICPRNLTPEDLHENAQ---------------------------------------------KLNSIV 185 (208)
T ss_pred CHHHHHHHhCcccCCCCCCCHHHHHHHHH---------------------------------------------HHHHHH
Confidence 99999999999999998877655543222 122499
Q ss_pred HHHHHhhhhhcCCCCc
Q 017326 354 QCLMEQHNAIFTDANE 369 (373)
Q Consensus 354 ~~LIe~~~~IF~~~~~ 369 (373)
++||+||+.||+++++
T Consensus 186 ~~lI~~~~~iF~~~~~ 201 (208)
T cd04392 186 TFMIKHSQKLFKAPAY 201 (208)
T ss_pred HHHHHHHHHHcCCcHH
Confidence 9999999999999875
No 22
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.8e-41 Score=306.87 Aligned_cols=164 Identities=27% Similarity=0.421 Sum_probs=148.3
Q ss_pred cccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCC-CC--CCCCChhhhHHH
Q 017326 132 VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA-SL--PEGVNPFDVAAL 208 (373)
Q Consensus 132 vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~-~~--~~~~d~~~va~l 208 (373)
.||+||++...+. .+..||.+|.+|+++|+++|+++|||||++|+..++++|++.+|+|... +. .+..|+|++|++
T Consensus 1 ~FGvpl~~~~~~~-~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~l 79 (196)
T cd04395 1 TFGVPLDDCPPSS-ENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSL 79 (196)
T ss_pred CCCccHHHHhccc-CCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHH
Confidence 5999999876543 3578999999999999999999999999999999999999999988753 22 234799999999
Q ss_pred HHHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhh
Q 017326 209 AKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEM 282 (373)
Q Consensus 209 LK~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf 282 (373)
||.|||+||+||+|.+.|++++++ .+++..++.++.+||+.|+.+|.||+.||++|+++++.|+|+++|||+||
T Consensus 80 lK~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~f 159 (196)
T cd04395 80 LKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF 159 (196)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhh
Confidence 999999999999999999999876 45778999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCChhH
Q 017326 283 APVIMWQKERKPEF 296 (373)
Q Consensus 283 ~P~Ll~~~~~~~~~ 296 (373)
||+|+|+++.+...
T Consensus 160 aP~l~r~~~~~~~~ 173 (196)
T cd04395 160 GPTLVRTSDDNMET 173 (196)
T ss_pred ccccCCCCCCCHHH
Confidence 99999998876543
No 23
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.3e-41 Score=305.33 Aligned_cols=159 Identities=28% Similarity=0.476 Sum_probs=145.9
Q ss_pred ccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCC-CC----CCCCChhhhHH
Q 017326 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA-SL----PEGVNPFDVAA 207 (373)
Q Consensus 133 FG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~-~~----~~~~d~~~va~ 207 (373)
||+||++++.++ +..||.+|.+|+++|+++|+++|||||++|+..+++++++.+|++... .. ....|+|++|+
T Consensus 1 FG~~L~~~~~~~--~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~ 78 (192)
T cd04398 1 FGVPLEDLILRE--GDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVAS 78 (192)
T ss_pred CCCChHHHHHHc--CCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHH
Confidence 999999999886 468999999999999999999999999999999999999999988642 21 12469999999
Q ss_pred HHHHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHh
Q 017326 208 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME 281 (373)
Q Consensus 208 lLK~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~v 281 (373)
+||.|||+||+||+|.++|+.|+++ .+++..++.++.+||+.|+.+|.+|+.||++|+++++.|+||++|||+|
T Consensus 79 ~LK~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaiv 158 (192)
T cd04398 79 LLKLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAII 158 (192)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHH
Confidence 9999999999999999999999886 2467889999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCC
Q 017326 282 MAPVIMWQKERK 293 (373)
Q Consensus 282 f~P~Ll~~~~~~ 293 (373)
|||+|++++..+
T Consensus 159 f~P~l~~~~~~~ 170 (192)
T cd04398 159 WGPTLMNAAPDN 170 (192)
T ss_pred HhhhhCCCCccc
Confidence 999999998654
No 24
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=7.6e-42 Score=307.04 Aligned_cols=171 Identities=23% Similarity=0.381 Sum_probs=152.6
Q ss_pred CcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCC--CCCCCChhhhHHH
Q 017326 131 DVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS--LPEGVNPFDVAAL 208 (373)
Q Consensus 131 ~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~--~~~~~d~~~va~l 208 (373)
.+||++|+++++++ +..||.+|.+|++||+++|+++|||||++|+.++++.+++.+|+|.+.. ..+..|+|+||++
T Consensus 1 k~FG~~L~~~~~~~--~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~l 78 (188)
T cd04383 1 KLFNGSLEEYIQDS--GQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGV 78 (188)
T ss_pred CcCCccHHHHHHHC--CCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHH
Confidence 47999999999864 5699999999999999999999999999999999999999999987643 2346899999999
Q ss_pred HHHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhh
Q 017326 209 AKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEM 282 (373)
Q Consensus 209 LK~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf 282 (373)
||.|||+||+||+|.++|+.++++ .+++..++.++.+||+.|+.+|+||+.||++|++|++.||||++|||+||
T Consensus 79 LK~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 158 (188)
T cd04383 79 LKLYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICF 158 (188)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeee
Confidence 999999999999999999999886 34678899999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCC-ChhHHHHHhhh
Q 017326 283 APVIMWQKER-KPEFYRQYWNH 303 (373)
Q Consensus 283 ~P~Ll~~~~~-~~~~~~~~~~~ 303 (373)
||+|++.++. ++.+....+++
T Consensus 159 ~P~L~~~p~~~~~~~~~~~~~~ 180 (188)
T cd04383 159 GPTLMPVPEGQDQVSCQAHVNE 180 (188)
T ss_pred eccccCCCCCccHHHHHHHHHH
Confidence 9999997654 44444444443
No 25
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.8e-41 Score=312.74 Aligned_cols=161 Identities=29% Similarity=0.496 Sum_probs=145.1
Q ss_pred cccCchhhHHhhhcC-------------CCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCC----C
Q 017326 132 VFGVPIEVTVQRQQY-------------GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN----A 194 (373)
Q Consensus 132 vFG~~L~~l~~~~~~-------------~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~----~ 194 (373)
|||++|++.++..+. .+.||.+|.+|++||+++|+++|||||++|+..++++|++.+|++.+ .
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~ 80 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF 80 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence 699999998876631 25799999999999999999999999999999999999999998643 3
Q ss_pred CCCCCCChhhhHHHHHHHHHhCCCCCCchhhhHHHHhH-----------------------HHHHHHHHHHHHhccHHHH
Q 017326 195 SLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA-----------------------RSSIHAMRNTLKKLSNVNF 251 (373)
Q Consensus 195 ~~~~~~d~~~va~lLK~fLr~LPePLl~~~ly~~~~~~-----------------------~~~~~~l~~ll~~LP~~n~ 251 (373)
+. +.+|+|++|++||.|||+||+||+|.++|+.|+++ .+++..++.++.+||+.|+
T Consensus 81 ~~-~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~ 159 (225)
T cd04396 81 DW-DGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNR 159 (225)
T ss_pred Cc-cCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHHHCCHHHH
Confidence 33 56899999999999999999999999999999653 2456778999999999999
Q ss_pred HHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhcccCCCCCC
Q 017326 252 MTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERK 293 (373)
Q Consensus 252 ~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~Ll~~~~~~ 293 (373)
.+|+||+.||++|++|++.||||++|||+||||+|+++++.+
T Consensus 160 ~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~~ 201 (225)
T cd04396 160 QLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDHE 201 (225)
T ss_pred HHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCccc
Confidence 999999999999999999999999999999999999988654
No 26
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.6e-41 Score=301.36 Aligned_cols=159 Identities=24% Similarity=0.424 Sum_probs=144.9
Q ss_pred cccCchhhHHhhhcC---CCCCCHHHHHHHHHHHhcC-CCCcCeEeecCCHHHHHHHHHHHcCCCCCCCC---CCCChhh
Q 017326 132 VFGVPIEVTVQRQQY---GKPVPHILVKCADYLVLSG-LNSQFLFKAEGDKKVIQHLVSMYNQDPNASLP---EGVNPFD 204 (373)
Q Consensus 132 vFG~~L~~l~~~~~~---~~~vP~iv~~~i~~i~~~g-l~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~---~~~d~~~ 204 (373)
+||+||++++++++. +..||.+|.+|++||+++| +.+|||||++|+...++++++.+|++.+.+.. ...|+|+
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~ 80 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence 699999999987532 4689999999999999987 79999999999999999999999998766542 3579999
Q ss_pred hHHHHHHHHHhCCCCCCchhhhHHHHhH-------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhh
Q 017326 205 VAALAKYYLASLPEPLTTFELYDEIKGA-------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARS 277 (373)
Q Consensus 205 va~lLK~fLr~LPePLl~~~ly~~~~~~-------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~n 277 (373)
||++||.|||+||+||+|.++|+.|..+ .+++..++.++.+||+.|+.+|++|+.||++|+.+++.|+||++|
T Consensus 81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N 160 (190)
T cd04400 81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRN 160 (190)
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHH
Confidence 9999999999999999999999999765 346788999999999999999999999999999999999999999
Q ss_pred HHHhhhhcccCCC
Q 017326 278 LAMEMAPVIMWQK 290 (373)
Q Consensus 278 LA~vf~P~Ll~~~ 290 (373)
||+||||+|+++.
T Consensus 161 La~vf~P~L~~~~ 173 (190)
T cd04400 161 VCIVFSPTLNIPA 173 (190)
T ss_pred hhhhcCCCCCCCH
Confidence 9999999998664
No 27
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=1.2e-40 Score=299.82 Aligned_cols=162 Identities=25% Similarity=0.393 Sum_probs=151.4
Q ss_pred CcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHH
Q 017326 131 DVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAK 210 (373)
Q Consensus 131 ~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK 210 (373)
++||+||+++++++..+..||.+|.+|++||+++|+++|||||++|+...++++++.+|+|...++..+.|+|++|++||
T Consensus 1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~lK 80 (189)
T cd04393 1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASLLR 80 (189)
T ss_pred CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHHHH
Confidence 47999999998876566799999999999999999999999999999999999999999998887766789999999999
Q ss_pred HHHHhCCCCCCchhhhHHHHhH-------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhh
Q 017326 211 YYLASLPEPLTTFELYDEIKGA-------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMA 283 (373)
Q Consensus 211 ~fLr~LPePLl~~~ly~~~~~~-------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~ 283 (373)
.|||+||+||+|.+.|+.++++ .+++..++.++.+||+.|+.+|.+|+.||++|++|++.|+||+.|||+|||
T Consensus 81 ~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf~ 160 (189)
T cd04393 81 LFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVFG 160 (189)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhcc
Confidence 9999999999999999999876 235678999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCC
Q 017326 284 PVIMWQKER 292 (373)
Q Consensus 284 P~Ll~~~~~ 292 (373)
|+||+.+..
T Consensus 161 P~l~~~~~~ 169 (189)
T cd04393 161 PDVFHVYTD 169 (189)
T ss_pred CceeCCCCC
Confidence 999998864
No 28
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.5e-40 Score=297.97 Aligned_cols=160 Identities=31% Similarity=0.533 Sum_probs=148.5
Q ss_pred ccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCC-CCCChhhhHHHHHH
Q 017326 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLP-EGVNPFDVAALAKY 211 (373)
Q Consensus 133 FG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~-~~~d~~~va~lLK~ 211 (373)
||+||++++.. +..||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|...++. .++|+|++|++||.
T Consensus 1 FG~pL~~~~~~---~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~ 77 (185)
T cd04373 1 FGVPLANVVTS---EKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKS 77 (185)
T ss_pred CCCchHHHHhC---CCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHH
Confidence 99999999873 679999999999999999999999999999999999999999998776653 45799999999999
Q ss_pred HHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhc
Q 017326 212 YLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPV 285 (373)
Q Consensus 212 fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~ 285 (373)
|||+||+||+|+++|+.|.++ .+++..++.++++||+.|+.+|.||+.||++|+++++.|+||++|||+||||+
T Consensus 78 fLreLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~ 157 (185)
T cd04373 78 FFSELPDPLIPYSMHLELVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPT 157 (185)
T ss_pred HHhcCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccc
Confidence 999999999999999999886 34678999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCChh
Q 017326 286 IMWQKERKPE 295 (373)
Q Consensus 286 Ll~~~~~~~~ 295 (373)
|++++..+..
T Consensus 158 L~~~~~~~~~ 167 (185)
T cd04373 158 LMRPDFTSME 167 (185)
T ss_pred cCCCCCCCHH
Confidence 9998876643
No 29
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=6.8e-41 Score=302.43 Aligned_cols=161 Identities=26% Similarity=0.432 Sum_probs=147.8
Q ss_pred ccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCC--CCCCCChhhhHHHHH
Q 017326 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS--LPEGVNPFDVAALAK 210 (373)
Q Consensus 133 FG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~--~~~~~d~~~va~lLK 210 (373)
||+||+.+++++ +..||.+|.+|++||+++|+++|||||++|+..+++++++.+|++.... ..+..|+|+||++||
T Consensus 1 FGv~L~~~~~r~--~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK 78 (196)
T cd04387 1 FGVKISTVTKRE--RSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLK 78 (196)
T ss_pred CCCCHHHHHHhc--CCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHH
Confidence 999999999886 5689999999999999999999999999999999999999999876432 234689999999999
Q ss_pred HHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhh
Q 017326 211 YYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAP 284 (373)
Q Consensus 211 ~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P 284 (373)
.|||+||+||+|+++|+.|+++ ..++..++.++.+||+.|+.+|.+|+.||++|+++++.||||+.|||+||||
T Consensus 79 ~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P 158 (196)
T cd04387 79 LYFRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGP 158 (196)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHcc
Confidence 9999999999999999999876 3467789999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCChh
Q 017326 285 VIMWQKERKPE 295 (373)
Q Consensus 285 ~Ll~~~~~~~~ 295 (373)
+|++++..+..
T Consensus 159 ~Llr~~~~~~~ 169 (196)
T cd04387 159 TLLRPSEKESK 169 (196)
T ss_pred ccCCCCccccc
Confidence 99999876643
No 30
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-40 Score=299.08 Aligned_cols=165 Identities=27% Similarity=0.364 Sum_probs=148.6
Q ss_pred ccCchhhHHhhhcC---CCCCCHHHHHHHHHHH-hcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHH
Q 017326 133 FGVPIEVTVQRQQY---GKPVPHILVKCADYLV-LSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAAL 208 (373)
Q Consensus 133 FG~~L~~l~~~~~~---~~~vP~iv~~~i~~i~-~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~l 208 (373)
||+||++++.+++. +..||.+|..|+++|. .+|+++|||||++|+..+++++++.+|+|.. .+....|+|++|++
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~-~~~~~~d~h~va~l 79 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDY-PLSGLEDPHVPASL 79 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCC-CccccCCHHHHHHH
Confidence 99999999987743 4689999999999986 5789999999999999999999999998864 33455799999999
Q ss_pred HHHHHHhCCCCCCchhhhHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcc--CcCCCChhhHHHhhhhcc
Q 017326 209 AKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKS--LLNKMDARSLAMEMAPVI 286 (373)
Q Consensus 209 LK~fLr~LPePLl~~~ly~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s--~~NkM~~~nLA~vf~P~L 286 (373)
||.|||+||+||+|.++|++++++.+..+.+++++.+||+.|+.+|.||+.||++|++++ +.||||++|||+||||+|
T Consensus 80 LK~fLReLpePli~~~~~~~~i~~~~~~~~~~~li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAivf~P~l 159 (187)
T cd04389 80 LKLWLRELEEPLIPDALYQQCISASEDPDKAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFAPNI 159 (187)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhcCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHcccc
Confidence 999999999999999999999998767778999999999999999999999999999754 789999999999999999
Q ss_pred cCCCCCChhHHH
Q 017326 287 MWQKERKPEFYR 298 (373)
Q Consensus 287 l~~~~~~~~~~~ 298 (373)
++++.+++....
T Consensus 160 ~~~~~~~~~~~~ 171 (187)
T cd04389 160 LRCTSDDPRVIF 171 (187)
T ss_pred CCCCCCCHHHHH
Confidence 999988875433
No 31
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.6e-40 Score=299.04 Aligned_cols=159 Identities=23% Similarity=0.339 Sum_probs=142.2
Q ss_pred ccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcC--CCCc----CeEeecCCHHHHHHHHHHHcCCCCCCC----CCCCCh
Q 017326 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSG--LNSQ----FLFKAEGDKKVIQHLVSMYNQDPNASL----PEGVNP 202 (373)
Q Consensus 133 FG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~g--l~~e----GIFR~~g~~~~i~~l~~~~~~~~~~~~----~~~~d~ 202 (373)
||+||+.+++++ +..||.+|.+|++||+++| +..+ ||||++|+.+.+++|++.+|+|...+. .+.+|+
T Consensus 1 FGv~L~~~~~~~--~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv 78 (212)
T cd04399 1 FGVDLETRCRLD--KKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEP 78 (212)
T ss_pred CCCcHHHHHhhc--CCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCH
Confidence 999999999875 4589999999999999975 4333 999999999999999999999877653 346899
Q ss_pred hhhHHHHHHHHHhCCCCCCchhhhHHHHhH------------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCc
Q 017326 203 FDVAALAKYYLASLPEPLTTFELYDEIKGA------------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLL 270 (373)
Q Consensus 203 ~~va~lLK~fLr~LPePLl~~~ly~~~~~~------------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~ 270 (373)
|+||++||.|||+||+||+|+++|+.|+++ .+++..++.++.+||..|+.+|++|+.||.+|++++..
T Consensus 79 ~~va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l~~LP~~n~~~L~~li~hL~rv~~~~~~ 158 (212)
T cd04399 79 STVASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLSQLPKSHIATLDAIITHFYRLIEITKM 158 (212)
T ss_pred HHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998653 45788999999999999999999999999999998766
Q ss_pred C---CCChhhHHHhhhhcccCCCCCC
Q 017326 271 N---KMDARSLAMEMAPVIMWQKERK 293 (373)
Q Consensus 271 N---kM~~~nLA~vf~P~Ll~~~~~~ 293 (373)
| ||+++|||+||||||+|+..+.
T Consensus 159 ~~~~kM~~~nLa~vfgp~llr~~~~~ 184 (212)
T cd04399 159 GESEEEYADKLATSLSREILRPIIES 184 (212)
T ss_pred ccccccCHHHHHHHhhhhhcCCCccc
Confidence 5 6999999999999999987654
No 32
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=2.6e-39 Score=290.35 Aligned_cols=158 Identities=29% Similarity=0.482 Sum_probs=145.4
Q ss_pred ccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHH
Q 017326 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 212 (373)
Q Consensus 133 FG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~f 212 (373)
||+||+.++.. +..||.+|.+|++||+++|+++|||||++|+..+++++++.+|++......+.+|+|+||++||+|
T Consensus 1 FG~~L~~~~~~---~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK~f 77 (186)
T cd04377 1 FGVSLSSLTSE---DRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLKQW 77 (186)
T ss_pred CCCCHHHHHhC---CCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHHHH
Confidence 99999999863 568999999999999999999999999999999999999999998543333568999999999999
Q ss_pred HHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhcc
Q 017326 213 LASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVI 286 (373)
Q Consensus 213 Lr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~L 286 (373)
||+||+||+|+++|++|+++ .+++..++.++.+||+.|+.+|.+|+.||++|++|++.|+|+++|||+||||+|
T Consensus 78 lr~LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~l 157 (186)
T cd04377 78 LRELPEPLMTFELYENFLRAMELEEKQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCI 157 (186)
T ss_pred HHcCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHh
Confidence 99999999999999999875 356788999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 017326 287 MWQKERK 293 (373)
Q Consensus 287 l~~~~~~ 293 (373)
+|+++..
T Consensus 158 l~~~~~~ 164 (186)
T cd04377 158 LRCPDTA 164 (186)
T ss_pred cCCCCCC
Confidence 9998653
No 33
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=1.9e-39 Score=291.84 Aligned_cols=148 Identities=22% Similarity=0.372 Sum_probs=133.5
Q ss_pred cCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHHHHhCCCCCCchh
Q 017326 145 QYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFE 224 (373)
Q Consensus 145 ~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~LPePLl~~~ 224 (373)
...+.+|.+|.+|+++||++|+++|||||++|+.. +.++++.+|++......+.+|+|+||++||.|||+||+||||++
T Consensus 10 ~~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPePLip~~ 88 (200)
T cd04388 10 SPPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPNPVIPAP 88 (200)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCCccCCHH
Confidence 34689999999999999999999999999999876 67899999986443333568999999999999999999999999
Q ss_pred hhHHHHhHH-------HHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhcccCCCCCC
Q 017326 225 LYDEIKGAR-------SSIHAMRNTLK--KLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERK 293 (373)
Q Consensus 225 ly~~~~~~~-------~~~~~l~~ll~--~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~Ll~~~~~~ 293 (373)
+|++|+++. +++..++.++. .||+.|+.||+||+.||++|++|++.|+||++|||+||||+|||++...
T Consensus 89 ~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~~~~ 166 (200)
T cd04388 89 VYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQPAS 166 (200)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCCccc
Confidence 999998863 46778889887 8999999999999999999999999999999999999999999998654
No 34
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=5.4e-39 Score=289.39 Aligned_cols=149 Identities=27% Similarity=0.387 Sum_probs=138.1
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHHHHhCCCCCCchhh
Q 017326 146 YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFEL 225 (373)
Q Consensus 146 ~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~LPePLl~~~l 225 (373)
++..||.+|.+|+++|+++|+++|||||++|+..+++.+++.+++|......+..|+|++|++||.|||+||+||+|+++
T Consensus 13 ~~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~~~ 92 (193)
T cd04382 13 TSPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITFAL 92 (193)
T ss_pred CCCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCHHH
Confidence 46799999999999999999999999999999999999999999887664445579999999999999999999999999
Q ss_pred hHHHHhHH------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhcccCCCCCChh
Q 017326 226 YDEIKGAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 295 (373)
Q Consensus 226 y~~~~~~~------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~Ll~~~~~~~~ 295 (373)
|+.|+++. +++..++.++..||+.|+.+|+||+.||++|++ ++.||||+.|||+||||+||+.++.++.
T Consensus 93 y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~~ 167 (193)
T cd04382 93 WKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNPD 167 (193)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCcc
Confidence 99998873 467889999999999999999999999999999 9999999999999999999999877654
No 35
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.6e-38 Score=284.81 Aligned_cols=157 Identities=27% Similarity=0.434 Sum_probs=141.4
Q ss_pred cCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCC-CC-CCCCCChhhhHHHHHH
Q 017326 134 GVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-AS-LPEGVNPFDVAALAKY 211 (373)
Q Consensus 134 G~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~-~~-~~~~~d~~~va~lLK~ 211 (373)
|.+|+...- ++..||.+|.+|++||+++|+++|||||++|+..++++|++.++.+.. .. ..+..|+|+||++||.
T Consensus 2 ~~~l~~~~~---~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~ 78 (184)
T cd04385 2 GPALEDQQL---TDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKR 78 (184)
T ss_pred CccHHHhhh---CCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHH
Confidence 667775533 467999999999999999999999999999999999999999987642 22 2356899999999999
Q ss_pred HHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhc
Q 017326 212 YLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPV 285 (373)
Q Consensus 212 fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~ 285 (373)
|||+||+||+|.++|+.|+++ ..++..++.++.+||+.|+.+|.+|+.||++|++|++.|+|+++|||+||||+
T Consensus 79 yLreLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ 158 (184)
T cd04385 79 FLRDLPDPLLTSELHAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPT 158 (184)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccc
Confidence 999999999999999999876 34678899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 017326 286 IMWQKERK 293 (373)
Q Consensus 286 Ll~~~~~~ 293 (373)
|+++++.+
T Consensus 159 ll~~~~~~ 166 (184)
T cd04385 159 LFQTDEHS 166 (184)
T ss_pred cCCCCccc
Confidence 99998753
No 36
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.1e-38 Score=283.58 Aligned_cols=146 Identities=27% Similarity=0.386 Sum_probs=131.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHH-HcCC----CCCCCCC-CCChhhhHHHHHHHHHhCCCCCCc
Q 017326 149 PVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSM-YNQD----PNASLPE-GVNPFDVAALAKYYLASLPEPLTT 222 (373)
Q Consensus 149 ~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~-~~~~----~~~~~~~-~~d~~~va~lLK~fLr~LPePLl~ 222 (373)
..+.+|.+|++||+++|+++|||||++|+..+++++++. +|.+ ...++.. .+|+|+||++||+|||+||+||+|
T Consensus 27 ~~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi~ 106 (203)
T cd04374 27 IGFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLMT 106 (203)
T ss_pred ccHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcCC
Confidence 446689999999999999999999999999999999875 6654 2234433 579999999999999999999999
Q ss_pred hhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhcccCCCCCCh
Q 017326 223 FELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKP 294 (373)
Q Consensus 223 ~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~Ll~~~~~~~ 294 (373)
+++|+.|+++ ..++..++.++.+||+.|+.+|++|+.||++|++|++.||||+.|||+||||+|+|++..+.
T Consensus 107 ~~~y~~~i~~~~~~~~~~ri~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~~ 184 (203)
T cd04374 107 YELHNDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEETV 184 (203)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCccH
Confidence 9999999886 35788999999999999999999999999999999999999999999999999999987654
No 37
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=3.1e-37 Score=321.61 Aligned_cols=195 Identities=25% Similarity=0.331 Sum_probs=173.0
Q ss_pred CCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCC---CC--CCCCCChhh
Q 017326 130 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN---AS--LPEGVNPFD 204 (373)
Q Consensus 130 ~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~---~~--~~~~~d~~~ 204 (373)
-++|||+|.+.. ...+++.||.+|..|+..+|.+||++.||||++||...|..|++.+|++.. ++ ...+.|+++
T Consensus 1155 ~~~~GVrl~dCP-~~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNV 1233 (1973)
T KOG4407|consen 1155 QPVLGVRLADCP-TGSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNV 1233 (1973)
T ss_pred CcccccccccCC-cccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHH
Confidence 459999998753 233578999999999999999999999999999999999999999998743 22 223579999
Q ss_pred hHHHHHHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhH
Q 017326 205 VAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSL 278 (373)
Q Consensus 205 va~lLK~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nL 278 (373)
|.+|||.|||.|||||+|.++|..||++ -+++..|++||.+||..||+||++|+.||.+|+.|+++|||-++||
T Consensus 1234 VSSLLK~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNL 1313 (1973)
T KOG4407|consen 1234 VSSLLKMFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLLRKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNL 1313 (1973)
T ss_pred HHHHHHHHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHhcccccccccccce
Confidence 9999999999999999999999999998 3689999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccCCCCCChhHHHHHhhhhhccccccccCCCCCCccccccchhh
Q 017326 279 AMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESE 329 (373)
Q Consensus 279 A~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~ve~li~~~~~~f~~d~~~ 329 (373)
|++|||+|+|.+++++..+..+| .++|+|||+||.|.||||......
T Consensus 1314 Ai~FGPsiVRts~Dnm~tmVthM----~dQckIVEtLI~~~dwfF~esg~t 1360 (1973)
T KOG4407|consen 1314 AIMFGPSIVRTSDDNMATMVTHM----SDQCKIVETLIHYNDWFFDESGTT 1360 (1973)
T ss_pred eEEeccceeccCCccHHHHhhcc----hhhhhHHHHHHhhhhheeccCCCc
Confidence 99999999999999865544443 459999999999999999864333
No 38
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=100.00 E-value=1.4e-35 Score=272.78 Aligned_cols=168 Identities=21% Similarity=0.334 Sum_probs=151.5
Q ss_pred CCCCCCcccCchhhHHhhhc--------------------CCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHH----H
Q 017326 126 GVASTDVFGVPIEVTVQRQQ--------------------YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKV----I 181 (373)
Q Consensus 126 ~~~~~~vFG~~L~~l~~~~~--------------------~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~----i 181 (373)
+...+++||.+|+.+..-.. ....||.+|.+|++||+++|+.+|||||++|+... +
T Consensus 6 ~~~~~s~fG~sl~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i 85 (220)
T cd04380 6 GVYLPSCFGSSLETLIRLPDPGIRNLIDQLELGDNPDYSEVPLSIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELL 85 (220)
T ss_pred eeEecccccccHHHHhcCCchHhhccccccccccCCCCCCCccccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHH
Confidence 34467889999998875221 24589999999999999999999999999999999 9
Q ss_pred HHHHHHHcCCCCCCCCCCCChhhhHHHHHHHHHhCCCCCCchhhhHHHHhH-HHHHHHHHHHHH-hccHHHHHHHHHHHH
Q 017326 182 QHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA-RSSIHAMRNTLK-KLSNVNFMTLEYVTA 259 (373)
Q Consensus 182 ~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~LPePLl~~~ly~~~~~~-~~~~~~l~~ll~-~LP~~n~~~L~~L~~ 259 (373)
+++++.+|+|.... ...|+|++|++||.|||+||+||+|+++|+.++++ ......+++++. +||+.|+.+|.||+.
T Consensus 86 ~~l~~~ld~~~~~~--~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~~~~~~~~~~ll~~~LP~~n~~~l~~L~~ 163 (220)
T cd04380 86 AEIRDALDTGSPFN--SPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAVANNEEDKRQVIRISLPPVHRNVFVYLCS 163 (220)
T ss_pred HHHHHHHhCCCCCC--CCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCcHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 99999999987765 45899999999999999999999999999999987 355667889999 999999999999999
Q ss_pred HHHHHHhccCcCCCChhhHHHhhhhcccCCCCCChh
Q 017326 260 LLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 295 (373)
Q Consensus 260 ~L~~V~~~s~~NkM~~~nLA~vf~P~Ll~~~~~~~~ 295 (373)
||++|+++++.|+|+++|||+||||+|+|++..++.
T Consensus 164 fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~~~~~ 199 (220)
T cd04380 164 FLRELLSESADRGLDENTLATIFGRVLLRDPPRAGG 199 (220)
T ss_pred HHHHHHHHHHhhCCCHHHhHHHhcchhccCCcccch
Confidence 999999999999999999999999999999987764
No 39
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-36 Score=293.95 Aligned_cols=286 Identities=22% Similarity=0.289 Sum_probs=207.4
Q ss_pred HHHhhHHHhh---hccchhHHHHHHHhcCC-ccccccchhhhhHhhhhcccccccccccchhhhcccchhhHHHHHhhhh
Q 017326 37 DAKGNAADVA---ERVGSAVKSRWALLQEP-STKHAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKVEEAAKKTAQK 112 (373)
Q Consensus 37 ~~kknlk~ly---vhp~~~~Ks~~~~~q~~-~~~~~~~~~~iS~kf~tkify~~~lselke~v~~~~~~~~e~~~~~~~k 112 (373)
.+||-+|.-- ..|+..++.++.++|+. -+...|.+.|+....-+|+| .+--.+-+..-+.++..- =.++.|.++
T Consensus 247 eLkKkmke~p~e~k~p~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~-TMvp~~qk~g~k~g~~~~-~~lKsC~RR 324 (812)
T KOG1451|consen 247 ELKKKMKESPTEDKRPTPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIF-TMVPANQKTGTKMGQTAT-FKLKSCSRR 324 (812)
T ss_pred HHHHHHhhCcccccCCCCcccceeeeehhhhhccchhhhheeEeecccceE-EEeecccCCCCcCCCcce-EEehhhccC
Confidence 4567777665 78999999999999987 56667888888766666665 333222222222221110 001223222
Q ss_pred c-----cchHhhHH-------------------HhhcC-CCCCCcccCc--hhhHHhhhcCCCCCCHHHHHHHHHHHhcC
Q 017326 113 S-----KTILTDIE-------------------RWQKG-VASTDVFGVP--IEVTVQRQQYGKPVPHILVKCADYLVLSG 165 (373)
Q Consensus 113 ~-----~~~~~~~~-------------------~~~~~-~~~~~vFG~~--L~~l~~~~~~~~~vP~iv~~~i~~i~~~g 165 (373)
. +.++.+++ -|-.. .+..+++-.+ ....-+.+ -+.---.+|++||+.||.+|
T Consensus 325 ktdSIdKRFCFDve~~erpgviTmQALSE~drrlWmeAMDG~ep~Y~s~~~~~~~~~~q-Ld~iGF~fvrkCI~i~Et~G 403 (812)
T KOG1451|consen 325 KTDSIDKRFCFDVEVEERPGVITMQALSEKDRRLWMEAMDGAEPSYTSGENCSTYKQTQ-LDDIGFEFVRKCIDILETSG 403 (812)
T ss_pred cccccccceeeeeeecccCCeeehHhhhhhHHHHHHHHhcCCCccccCccccchhhhhh-hhhhhHHHHHHHHHHHHhcC
Confidence 2 11222221 11110 0112233222 11100000 01122468999999999999
Q ss_pred CCCcCeEeecCCHHHHHHHHHHH-cCCC----CCCCCCCCChhhhHHHHHHHHHhCCCCCCchhhhHHHHhHH------H
Q 017326 166 LNSQFLFKAEGDKKVIQHLVSMY-NQDP----NASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGAR------S 234 (373)
Q Consensus 166 l~~eGIFR~~g~~~~i~~l~~~~-~~~~----~~~~~~~~d~~~va~lLK~fLr~LPePLl~~~ly~~~~~~~------~ 234 (373)
++++|+||..|...+|++|...+ |... +.+..+++|+-+|++.||.|||.|||||++++++..|+.++ .
T Consensus 404 I~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~LHk~FI~AAKsdnq~y 483 (812)
T KOG1451|consen 404 IHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYELHKVFINAAKSDNQTY 483 (812)
T ss_pred cccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHHHHHHHHHHhccchhh
Confidence 99999999999999999998874 4222 22233568999999999999999999999999999999884 4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhcccCCCCCChhHHHHHhhhhhccccccccC
Q 017326 235 SIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEP 314 (373)
Q Consensus 235 ~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~ve~ 314 (373)
++.+++.++.+||..|+.+|..|++||.+|+.|+..|.||..||++||||+|||++.++.
T Consensus 484 Rv~aIHsLVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQEETV-------------------- 543 (812)
T KOG1451|consen 484 RVDAIHSLVHKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQEETV-------------------- 543 (812)
T ss_pred hHHHHHHHHHhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchHHHH--------------------
Confidence 899999999999999999999999999999999999999999999999999999997663
Q ss_pred CCCCCccccccchhhhhhcccCCCCCCCCCCccchhHHHHHHHHhhhhhcCCCCccc
Q 017326 315 ATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETV 371 (373)
Q Consensus 315 li~~~~~~f~~d~~~~~~~~s~~p~~~~~~~~~~~~~vv~~LIe~~~~IF~~~~~~~ 371 (373)
.++|+++|+|| ||+.|||||++||..+||.-
T Consensus 544 -------------------------AAiMdIKFQNI-VVEILIEnyeKIF~t~Pd~S 574 (812)
T KOG1451|consen 544 -------------------------AAIMDIKFQNI-VVEILIENYEKIFKTKPDSS 574 (812)
T ss_pred -------------------------HHHHcchhhhh-hHHHHHhhhHHHhcCCCCcc
Confidence 35778999999 99999999999999999864
No 40
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=100.00 E-value=2.1e-33 Score=249.15 Aligned_cols=147 Identities=33% Similarity=0.573 Sum_probs=138.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCC-CCCCCChhhhHHHHHHHHHhCCCCCCchhhhH
Q 017326 149 PVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS-LPEGVNPFDVAALAKYYLASLPEPLTTFELYD 227 (373)
Q Consensus 149 ~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~-~~~~~d~~~va~lLK~fLr~LPePLl~~~ly~ 227 (373)
.||.++.+|++||+++|+++|||||++|+..+++++++.++++...+ ....+|+|++|++||.|||+||+||+|.+.|+
T Consensus 2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~ 81 (174)
T smart00324 2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE 81 (174)
T ss_pred CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence 68999999999999999999999999999999999999999998776 34669999999999999999999999999999
Q ss_pred HHHhHH------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhcccCCCCCChh
Q 017326 228 EIKGAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 295 (373)
Q Consensus 228 ~~~~~~------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~Ll~~~~~~~~ 295 (373)
.++++. +++..++.++.+||+.|+.+|.+|+.||++|+.+++.|+||++|||+||||+|+++++.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~~ 155 (174)
T smart00324 82 EFIEAAKVEDETERLRALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEVA 155 (174)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccHH
Confidence 998763 45789999999999999999999999999999999999999999999999999999987753
No 41
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=100.00 E-value=1e-33 Score=279.18 Aligned_cols=162 Identities=27% Similarity=0.384 Sum_probs=149.5
Q ss_pred CCCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCC--CCCCCCChhhhH
Q 017326 129 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA--SLPEGVNPFDVA 206 (373)
Q Consensus 129 ~~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~--~~~~~~d~~~va 206 (373)
...||||||..++++ ++..+|.+|.+.++||+++|++++||||++|.+++|+.|++.++..... ..++....|++|
T Consensus 297 d~~vFGVPL~vll~r--tG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvA 374 (674)
T KOG2200|consen 297 DGGVFGVPLTVLLQR--TGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVA 374 (674)
T ss_pred CCceeecCceeeecc--CCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHH
Confidence 568999999999986 5779999999999999999999999999999999999999999865544 334567899999
Q ss_pred HHHHHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHH
Q 017326 207 ALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM 280 (373)
Q Consensus 207 ~lLK~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~ 280 (373)
++||.|||+||+||+|.++.+.|+.+ .+++++++.+|-.||.+||++|+-|+.||++|+.+++.|+||+.|||+
T Consensus 375 dlLKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~aillLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nlsv 454 (674)
T KOG2200|consen 375 DLLKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAILLLPDENREALKTLLEFLNDVIANEEENQMTLMNLSV 454 (674)
T ss_pred HHHHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhh
Confidence 99999999999999999999999988 468999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCC
Q 017326 281 EMAPVIMWQKER 292 (373)
Q Consensus 281 vf~P~Ll~~~~~ 292 (373)
||||+||.....
T Consensus 455 cmAPsLF~l~~~ 466 (674)
T KOG2200|consen 455 CMAPSLFHLNAL 466 (674)
T ss_pred hhcchHHhhccC
Confidence 999999987643
No 42
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=100.00 E-value=8.4e-32 Score=236.87 Aligned_cols=143 Identities=37% Similarity=0.585 Sum_probs=135.5
Q ss_pred CHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHHHHhCCCCCCchhhhHHHH
Q 017326 151 PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIK 230 (373)
Q Consensus 151 P~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~LPePLl~~~ly~~~~ 230 (373)
|.+|.+|++||+++|+.+|||||++|+..+++.+++.++.+.........|+|++|++||.|||+||+||+|.+.|+.++
T Consensus 1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~ 80 (169)
T cd00159 1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFI 80 (169)
T ss_pred ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHH
Confidence 88999999999999999999999999999999999999999877544568999999999999999999999999999999
Q ss_pred hHH------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhcccCCCCCC
Q 017326 231 GAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERK 293 (373)
Q Consensus 231 ~~~------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~Ll~~~~~~ 293 (373)
++. .++..++.++.+||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|++++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~ 149 (169)
T cd00159 81 ELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD 149 (169)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc
Confidence 884 478899999999999999999999999999999999999999999999999999999765
No 43
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.98 E-value=1.9e-32 Score=277.10 Aligned_cols=164 Identities=24% Similarity=0.412 Sum_probs=151.7
Q ss_pred CCCCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCC--CChhhh
Q 017326 128 ASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEG--VNPFDV 205 (373)
Q Consensus 128 ~~~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~--~d~~~v 205 (373)
+...+||++|+.+|+++ +..||.+|..|++.|+.+|++++||||++|+...|++|+..+|.+...++.+. .|+|+|
T Consensus 452 k~~~vFGs~Lealc~rE--~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~~~d~d~~l~l~~~~~~dihai 529 (650)
T KOG1450|consen 452 KFDKVFGSPLEALCQRE--NGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLREQSDQDNSLDLADDRWDDIHAI 529 (650)
T ss_pred ccCcccCccHHHHhhcc--CCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHHhcCccccccccccchhHHHHH
Confidence 34789999999999987 56999999999999999999999999999999999999999997776666554 799999
Q ss_pred HHHHHHHHHhCCCCCCchhhhHHHHhHH------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHH
Q 017326 206 AALAKYYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLA 279 (373)
Q Consensus 206 a~lLK~fLr~LPePLl~~~ly~~~~~~~------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA 279 (373)
+++||.|||+||+||++..+...|.++. .+....++++..||.+|+.||+||+.||++|.+|++.|||+.+|||
T Consensus 530 ~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li~~lP~~n~~Tlr~lv~HL~rv~shs~kNrMs~~NLa 609 (650)
T KOG1450|consen 530 TGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELIGLLPDANYQTLRYLVRHLRRVLSHSDKNRMSRHNLA 609 (650)
T ss_pred HHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhccccccccccceE
Confidence 9999999999999999999999998873 4678899999999999999999999999999999999999999999
Q ss_pred HhhhhcccCCCCCC
Q 017326 280 MEMAPVIMWQKERK 293 (373)
Q Consensus 280 ~vf~P~Ll~~~~~~ 293 (373)
+||||+|+.+-+.+
T Consensus 610 IVfgpTl~~~~~~~ 623 (650)
T KOG1450|consen 610 IVFGPTLIKPEQET 623 (650)
T ss_pred EEeccccccccccc
Confidence 99999999966553
No 44
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=99.98 E-value=1.2e-32 Score=280.90 Aligned_cols=164 Identities=26% Similarity=0.484 Sum_probs=143.9
Q ss_pred CCCCCcccCchhh----HHhhhcCCCCCCHHHHHHHHHHH-hcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCC---CCC
Q 017326 127 VASTDVFGVPIEV----TVQRQQYGKPVPHILVKCADYLV-LSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS---LPE 198 (373)
Q Consensus 127 ~~~~~vFG~~L~~----l~~~~~~~~~vP~iv~~~i~~i~-~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~---~~~ 198 (373)
..+++|||.++.. ..+++ .-.+|.||.+|++||| .+|+++|||||++|+...|+.|++.||.+-.-+ ..+
T Consensus 894 ~~qTgIFG~~~~~kisv~t~~n--~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~ 971 (1112)
T KOG4269|consen 894 VKQTGIFGLPLNVKISVVTKRN--VSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDS 971 (1112)
T ss_pred ceeceeccccceeeEeeeeeec--ccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhccc
Confidence 3467899966553 33443 3489999999999999 799999999999999999999999999874333 235
Q ss_pred CCChhhhHHHHHHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCC
Q 017326 199 GVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNK 272 (373)
Q Consensus 199 ~~d~~~va~lLK~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~Nk 272 (373)
+.|||+|||+||+|||+||+||++.++|..|... ......+..+|.+||++|..++.+|+.||.+|++++.+||
T Consensus 972 E~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~slP~aNl~l~~~LlehL~RI~e~ekvNK 1051 (1112)
T KOG4269|consen 972 EMDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLISSLPPANLALFLFLLEHLKRIAEKEKVNK 1051 (1112)
T ss_pred cccHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHHHhhccccc
Confidence 6899999999999999999999999999999765 3466788999999999999999999999999999999999
Q ss_pred CChhhHHHhhhhcccCCCCC
Q 017326 273 MDARSLAMEMAPVIMWQKER 292 (373)
Q Consensus 273 M~~~nLA~vf~P~Ll~~~~~ 292 (373)
|+.+|||+||||+|.++.+.
T Consensus 1052 MnlrNlciVFsPTLniPse~ 1071 (1112)
T KOG4269|consen 1052 MNLRNLCIVFSPTLNIPSEI 1071 (1112)
T ss_pred ccccceeeeecccccCcHHh
Confidence 99999999999999998753
No 45
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=99.97 E-value=4.8e-32 Score=273.58 Aligned_cols=194 Identities=29% Similarity=0.400 Sum_probs=168.1
Q ss_pred CCCCcccCchhhHHhhhc-CCCCCCHHHHHHHH-HHH-hcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhh
Q 017326 128 ASTDVFGVPIEVTVQRQQ-YGKPVPHILVKCAD-YLV-LSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFD 204 (373)
Q Consensus 128 ~~~~vFG~~L~~l~~~~~-~~~~vP~iv~~~i~-~i~-~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~ 204 (373)
....+||++++.+..... .+..||.++.-+.+ +++ +.|++.|||||++|...+++.+++.+|.|...... +.|||+
T Consensus 142 ~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~-~iDvH~ 220 (577)
T KOG4270|consen 142 ASETVFGVSTEAMQLSYDPRGNFVPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQL-YIDVHC 220 (577)
T ss_pred chhhhhcchHHhhhcccccCCCcchhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccc-cCCHHH
Confidence 356799999887643322 24457999998888 655 57899999999999999999999999998877665 799999
Q ss_pred hHHHHHHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhH
Q 017326 205 VAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSL 278 (373)
Q Consensus 205 va~lLK~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nL 278 (373)
+|++||.||||||+|++++++|++|+.+ .++.+.++.++.+||+.|+..|.|+++||+.|+++++.||||++||
T Consensus 221 ~agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~Nl 300 (577)
T KOG4270|consen 221 LAGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKVQLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNL 300 (577)
T ss_pred HHHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhc
Confidence 9999999999999999999999999866 3578899999999999999999999999999999999999999999
Q ss_pred HHhhhhcccCCCCCChhHHHHHhhhhhccccccccCCCCCCccccc
Q 017326 279 AMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDML 324 (373)
Q Consensus 279 A~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~ve~li~~~~~~f~ 324 (373)
|+||||||+|.+++ .....+...+++...-+|+.+|.+.+|+|.
T Consensus 301 AiV~gPNl~~~~~p--~~~l~~avqvs~~~~~lie~~l~~~~~~~~ 344 (577)
T KOG4270|consen 301 AIVFGPNLLWMKDP--LTALMYAVQVSNFLKGLIEKTLEERDTSFP 344 (577)
T ss_pred eeEecCCccccCCh--HHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 99999999999973 334445555666667788999999999998
No 46
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.97 E-value=2e-31 Score=230.78 Aligned_cols=142 Identities=36% Similarity=0.540 Sum_probs=131.2
Q ss_pred CHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCC-CCCCCChhhhHHHHHHHHHhCCCCCCchhhhHHH
Q 017326 151 PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS-LPEGVNPFDVAALAKYYLASLPEPLTTFELYDEI 229 (373)
Q Consensus 151 P~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~-~~~~~d~~~va~lLK~fLr~LPePLl~~~ly~~~ 229 (373)
|.+|..|++||+++|+.++||||++|+..+++++++.++.+.... ..+.+|+|++|++||.||++||+||+|.++|+.+
T Consensus 1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~ 80 (151)
T PF00620_consen 1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF 80 (151)
T ss_dssp EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence 889999999999999999999999999999999999999998774 4567999999999999999999999999999999
Q ss_pred HhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhcccCCCCC
Q 017326 230 KGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKER 292 (373)
Q Consensus 230 ~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~Ll~~~~~ 292 (373)
+++ .+++..++.++..||+.|+.+|.+|+.||++|+.+++.|+||++|||+||||+|++++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~~~ 149 (151)
T PF00620_consen 81 IAASKSADEEEQIEAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPPSS 149 (151)
T ss_dssp HHHHTSSSHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGSTS
T ss_pred hhhhccchhhHHHHHHHHhhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCCcC
Confidence 954 467899999999999999999999999999999999999999999999999999999854
No 47
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.96 E-value=2.1e-29 Score=245.45 Aligned_cols=142 Identities=30% Similarity=0.481 Sum_probs=134.6
Q ss_pred CCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCC----CCCCCCCCChhhhHHHHHHHHHhCCCCCCch
Q 017326 148 KPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP----NASLPEGVNPFDVAALAKYYLASLPEPLTTF 223 (373)
Q Consensus 148 ~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~----~~~~~~~~d~~~va~lLK~fLr~LPePLl~~ 223 (373)
..||.+|.+|+.||+++|+++.||||++|+..++++|++.|+++. ....++++++|++|++||.|||+||+||||.
T Consensus 92 ~~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp~pLLP~ 171 (412)
T KOG2710|consen 92 GQIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLPDPLLPL 171 (412)
T ss_pred eeCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCCcccCCH
Confidence 689999999999999999999999999999999999999999984 5556677999999999999999999999999
Q ss_pred hhhHHHHhH-----H-HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcC-----------CCChhhHHHhhhhcc
Q 017326 224 ELYDEIKGA-----R-SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLN-----------KMDARSLAMEMAPVI 286 (373)
Q Consensus 224 ~ly~~~~~~-----~-~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~N-----------kM~~~nLA~vf~P~L 286 (373)
++|+.|+.. + +++..++.++..||+.|+.+|.+++.||+.++.|++.| +|++.|||+||+|+|
T Consensus 172 ~LY~~f~~p~kl~~e~e~~~~l~l~~~llp~~nr~~l~~ll~fL~~~a~~s~d~~~kdg~~~~gnkm~~~nlatIf~P~i 251 (412)
T KOG2710|consen 172 ELYESFINPAKLEPETEQLGVLQLLIYLLPKCNRDTLEVLLGFLSVVASHAEDNIGKDGQEVNGNKMTSENLATIFGPNI 251 (412)
T ss_pred HHHHHHhhhhcCCcHHHHHHHHHHHHHhcCccchhHHHHHHhhhhhhhcccccccccccccccCcccchhhhhhhhcchh
Confidence 999999876 3 78899999999999999999999999999999999988 999999999999999
Q ss_pred cCC
Q 017326 287 MWQ 289 (373)
Q Consensus 287 l~~ 289 (373)
+..
T Consensus 252 L~k 254 (412)
T KOG2710|consen 252 LYK 254 (412)
T ss_pred hhc
Confidence 995
No 48
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=99.96 E-value=4.3e-30 Score=277.30 Aligned_cols=203 Identities=21% Similarity=0.354 Sum_probs=180.1
Q ss_pred ccccchhhhcccchhhHHHHHhhhhccchHhhHHHhhcCCCCCCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCC
Q 017326 88 FSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLN 167 (373)
Q Consensus 88 lselke~v~~~~~~~~e~~~~~~~k~~~~~~~~~~~~~~~~~~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~ 167 (373)
+..|..++++.+..|++|...||++|-......+...+....+ .||++|...+..+ +..||.++.+|+.+|+.+|+.
T Consensus 559 c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~-~fG~~l~~~~~~e--~~~vP~i~~~c~~~ie~~~lr 635 (918)
T KOG1453|consen 559 CRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRP-LFGVSLSELARYE--PSTVPFILKKCLREIEAHLLR 635 (918)
T ss_pred cccccccchhhhcccceeeeeccccchhhccccCccccccccc-cccHHHHHhhccC--CCCCCHHHHHHHHHHHHhhhh
Confidence 3445567778889999999999999987766555544443333 9999999998765 569999999999999999999
Q ss_pred CcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHHHHhCCCCCCchhhhHHHHhHH------------HH
Q 017326 168 SQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGAR------------SS 235 (373)
Q Consensus 168 ~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~LPePLl~~~ly~~~~~~~------------~~ 235 (373)
+|||||++|...+++.|...++.+.......+.|+|++++++|.|||+||+||+++.+|+.|+.+. +.
T Consensus 636 ~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVlK~yLr~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~ 715 (918)
T KOG1453|consen 636 VEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVLKLYLRKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEP 715 (918)
T ss_pred ccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHHHHHHHhccccccccchHHHHHhhhcccccccccccccc
Confidence 999999999999999999999998866666779999999999999999999999999999998873 26
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhcccCCCCCC
Q 017326 236 IHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERK 293 (373)
Q Consensus 236 ~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~Ll~~~~~~ 293 (373)
+..+..++..||+.|+++|.+|+.||.+|+.+++.|+|++.|||+||||||+|+++..
T Consensus 716 ~~~~~~~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlaivF~Ptllr~~d~~ 773 (918)
T KOG1453|consen 716 LRKLKEVLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAIVFAPTLLRPPDGT 773 (918)
T ss_pred chhHHHHHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccccccCcccCCCCCc
Confidence 7889999999999999999999999999999999999999999999999999999765
No 49
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.95 E-value=1.8e-28 Score=249.40 Aligned_cols=173 Identities=25% Similarity=0.330 Sum_probs=154.5
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCC-C-CCCCChhhhHHHHHHHHHhCCCCCCch
Q 017326 146 YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS-L-PEGVNPFDVAALAKYYLASLPEPLTTF 223 (373)
Q Consensus 146 ~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~-~-~~~~d~~~va~lLK~fLr~LPePLl~~ 223 (373)
+++.||.||..||.|+.++|+..|||||++|...++..|.+.|.++.... + ..+..+.+|+++||+|||+|++||+|.
T Consensus 723 s~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~FlrdlddpLft~ 802 (1186)
T KOG1117|consen 723 SKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDPLFTK 802 (1186)
T ss_pred cCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCccccch
Confidence 57899999999999999999999999999999999999999998876532 2 234679999999999999999999999
Q ss_pred hhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhcccCCCCCChhHH
Q 017326 224 ELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFY 297 (373)
Q Consensus 224 ~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~Ll~~~~~~~~~~ 297 (373)
++|..|+++ .+++....++|..||..||.||+.|+.||.+|..+++.|+|+++|||.||||+||.....+.
T Consensus 803 ~~~~~w~eaae~~d~~Er~~rY~~lI~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdgqde--- 879 (1186)
T KOG1117|consen 803 ELYPYWIEAAETQDDKERIKRYGALIRSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDGQDE--- 879 (1186)
T ss_pred hhhhhHHHhhhccchHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCCCch---
Confidence 999999988 46889999999999999999999999999999999999999999999999999999987663
Q ss_pred HHHhhhhhccccccccCCCCCCccccccchhhh
Q 017326 298 RQYWNHASRSSSKNMEPATPHGEWDMLADESEE 330 (373)
Q Consensus 298 ~~~~~~~~~~~~~~ve~li~~~~~~f~~d~~~~ 330 (373)
|+..+++.||+++.-.|..|+++.
T Consensus 880 ---------hevnVledLingYvvVF~v~eeev 903 (1186)
T KOG1117|consen 880 ---------HEVNVLEDLINGYVVVFEVDEEEV 903 (1186)
T ss_pred ---------hhhhHHHHHhcCceEEEEecHHHH
Confidence 344567778888888888776654
No 50
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=99.95 E-value=5.2e-28 Score=233.62 Aligned_cols=206 Identities=20% Similarity=0.259 Sum_probs=164.4
Q ss_pred ccccccchhhhccc--chhhHHHHHhhhhccchHhhHHHhhc-CCCCCCcccCchhhHHhhhcCCCCCCHHHHHHHHHHH
Q 017326 86 RGFSETKDKVAVGK--IKVEEAAKKTAQKSKTILTDIERWQK-GVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLV 162 (373)
Q Consensus 86 ~~lselke~v~~~~--~~~~e~~~~~~~k~~~~~~~~~~~~~-~~~~~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~ 162 (373)
..+-.|...++++. ++|.+|...+|..|...+.--|-.+- +...+.-=| -|.+.+.. ....||.+|..|+.+||
T Consensus 298 ~~Cv~C~krIkfg~~sLkCRdC~v~~H~~Cr~~l~lpCIP~l~g~~~k~geg-~L~DF~~s--~aPMIPalVVHCVneIE 374 (604)
T KOG3564|consen 298 ENCVPCGKRIKFGKLSLKCRDCPVVCHIECRDKLTLPCIPTLIGPPVKTGEG-MLADFAPS--TAPMIPALVVHCVNEIE 374 (604)
T ss_pred ccchhhhhhhhhhhcccccccCCeeechhHHhcCCCCCcCccCCCCCccCce-ehhhhccc--ccccchHHHHHHHHHHH
Confidence 34455666777775 67778777776665443322111100 111111111 24555443 35699999999999999
Q ss_pred hcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHHHHhCCCCCCchhhhHHHHhHH------HHH
Q 017326 163 LSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGAR------SSI 236 (373)
Q Consensus 163 ~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~LPePLl~~~ly~~~~~~~------~~~ 236 (373)
++||.+|||||++|....+++|++.+-++.........|+|++|++||.|||+|.+||||+.+..+|+.+. ..+
T Consensus 375 aRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~~rdf~eAa~~tD~dn~~ 454 (604)
T KOG3564|consen 375 ARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRLRRDFMEAAEITDEDNSI 454 (604)
T ss_pred HccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchHHHHHHHHhcCCCchhHH
Confidence 99999999999999999999999999999887666778999999999999999999999999999999884 457
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhcccCCCCCChh
Q 017326 237 HAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 295 (373)
Q Consensus 237 ~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~Ll~~~~~~~~ 295 (373)
.++.+.+..||.+|+.||.|||-|+++|++ |..|+|+..|||.+|||+++..+-.++.
T Consensus 455 ~aly~aV~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~vp~pd 512 (604)
T KOG3564|consen 455 LALYQAVGELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAVPNPD 512 (604)
T ss_pred HHHHHHHHhhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCCCCcc
Confidence 788899999999999999999999999999 8999999999999999999997766554
No 51
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.87 E-value=5.6e-22 Score=183.69 Aligned_cols=162 Identities=19% Similarity=0.180 Sum_probs=143.5
Q ss_pred CCCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCC-CC--CCCChhhh
Q 017326 129 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS-LP--EGVNPFDV 205 (373)
Q Consensus 129 ~~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~-~~--~~~d~~~v 205 (373)
-.++||.+|+.+++|+ ...-|.++.+|+++||++|++.-|+|+++|+..+-+.|++.|+.+.... +- ..-|.+.|
T Consensus 181 lrgvfG~~L~~lV~RE--~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvI 258 (442)
T KOG1452|consen 181 LRGVFGISLSRLVQRE--PESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVI 258 (442)
T ss_pred cccccchhhHhHhhcC--CCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCccee
Confidence 3468999999999987 5578999999999999999999999999999999999999998665432 21 23588899
Q ss_pred HHHHHHHHHhCCCCCCchhhhHHHHhHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChh
Q 017326 206 AALAKYYLASLPEPLTTFELYDEIKGAR---------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDAR 276 (373)
Q Consensus 206 a~lLK~fLr~LPePLl~~~ly~~~~~~~---------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 276 (373)
++++|.|+|||||||++...++...++. -....+-.+|..|+.+++.+|..++.||..|..+|+.|+||+.
T Consensus 259 tg~~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~ 338 (442)
T KOG1452|consen 259 TGDSKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLAIIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPT 338 (442)
T ss_pred ecccHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHHHHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHH
Confidence 9999999999999999999999888873 2566778899999999999999999999999999999999999
Q ss_pred hHHHhhhhcccCCCCC
Q 017326 277 SLAMEMAPVIMWQKER 292 (373)
Q Consensus 277 nLA~vf~P~Ll~~~~~ 292 (373)
.||.||||-||.+.+.
T Consensus 339 ~Ls~i~~P~L~~~~~t 354 (442)
T KOG1452|consen 339 RLSLIFAPLLFFCLDT 354 (442)
T ss_pred HHHHHhhhhHHHhhcc
Confidence 9999999999987643
No 52
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.80 E-value=8.7e-20 Score=182.99 Aligned_cols=198 Identities=18% Similarity=0.196 Sum_probs=169.5
Q ss_pred CCCCCCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhh
Q 017326 126 GVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDV 205 (373)
Q Consensus 126 ~~~~~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~v 205 (373)
......+||.||..+|.. ...|..+.++.-++-..|..++||||..++...++++++.+|.|.++.+. ...++++
T Consensus 76 ~~~~~~Lfg~pl~nic~~----~~lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~v~l~-~~~i~v~ 150 (741)
T KOG4724|consen 76 NTADSFLFGWPLTNICVH----FRLPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGLK-SGEIVVD 150 (741)
T ss_pred CCCCccccCccchhhccc----CCCCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhccccccccc-ccceEEe
Confidence 334667999999999864 34899999999999999999999999999999999999999999988874 4789999
Q ss_pred HHHHHHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHH
Q 017326 206 AALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLA 279 (373)
Q Consensus 206 a~lLK~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA 279 (373)
|+++|.|||..|.-++..++|+.|... .+++.+++++..+||..|..+|.+|...| -|..++.+|.|+.-|||
T Consensus 151 a~v~kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla 229 (741)
T KOG4724|consen 151 AAVDKDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQGDRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLA 229 (741)
T ss_pred ehhhhchhhhchhhhhccccHHHHhhccccccHHHHHHHHHHHHhhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHH
Confidence 999999999999999999999999765 56899999999999999999999999999 89999999999999999
Q ss_pred HhhhhcccCCCCCChhHHHHHhhhhhccccccccCCCCCCccccccchhhhhhcccCCCCCCCCCCccchhHHHHHHHHh
Q 017326 280 MEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQ 359 (373)
Q Consensus 280 ~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~ve~li~~~~~~f~~d~~~~~~~~s~~p~~~~~~~~~~~~~vv~~LIe~ 359 (373)
+|.+|++++....+...+..-.+ + ..--++++||+|
T Consensus 230 ~cv~p~~l~~~~~~s~e~~k~ln---~-----------------------------------------kv~~l~~flI~n 265 (741)
T KOG4724|consen 230 QCVNPIKLKVLTRTSSEFGKGLN---G-----------------------------------------KVPPLPIFLIVN 265 (741)
T ss_pred HHhcchhcccccccChhhhcccc---C-----------------------------------------CCCCceeeehhh
Confidence 99999999998665432221111 1 001157889999
Q ss_pred hhhhcCCCCcccCC
Q 017326 360 HNAIFTDANETVWR 373 (373)
Q Consensus 360 ~~~IF~~~~~~~~~ 373 (373)
+=.||+...+.++|
T Consensus 266 clrifGe~i~~~fr 279 (741)
T KOG4724|consen 266 CLRIFGEDIEGIFR 279 (741)
T ss_pred hHHhhcccccceee
Confidence 99999888777664
No 53
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=99.80 E-value=3.9e-20 Score=190.75 Aligned_cols=156 Identities=28% Similarity=0.446 Sum_probs=142.0
Q ss_pred CCCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCC-CCChhhhHH
Q 017326 129 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE-GVNPFDVAA 207 (373)
Q Consensus 129 ~~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~-~~d~~~va~ 207 (373)
....||++|...+.. ...||..+.+|++||+..|+.+|||||++|+......+++.|.++...++.+ +..+|++|+
T Consensus 914 ~s~~~~~~l~~~~t~---~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~vag 990 (1100)
T KOG4271|consen 914 ESNYFLTPLQDAVTS---EKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVAG 990 (1100)
T ss_pred hhhccCCcccccccC---CcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccccC
Confidence 346899999987753 5689999999999999999999999999999999999999999887777643 467999999
Q ss_pred HHHHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHh
Q 017326 208 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME 281 (373)
Q Consensus 208 lLK~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~v 281 (373)
.+|.||.+||+||+|+.++..+.++ ..++..++..+..||+.|+.+++|++.||.+|+....+|.||.+||.+|
T Consensus 991 Alksffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~ 1070 (1100)
T KOG4271|consen 991 ALKSFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSIC 1070 (1100)
T ss_pred cchhhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHhhhcCchHHHHHHHHHHHHhhhccccccccccccccccc
Confidence 9999999999999999988888776 3467788999999999999999999999999999999999999999999
Q ss_pred hhhccc
Q 017326 282 MAPVIM 287 (373)
Q Consensus 282 f~P~Ll 287 (373)
|+|.|+
T Consensus 1071 ~~~~~~ 1076 (1100)
T KOG4271|consen 1071 FPTLLM 1076 (1100)
T ss_pred ccchHH
Confidence 999888
No 54
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.80 E-value=8.5e-19 Score=158.68 Aligned_cols=182 Identities=19% Similarity=0.210 Sum_probs=144.6
Q ss_pred CcccCchhhHHhhhcCCCCCCHHHHHHH--HHHHhcCCCC--cCeEeecCCHHHHHHHHHHHcCCCCCCCCC-CCC-h--
Q 017326 131 DVFGVPIEVTVQRQQYGKPVPHILVKCA--DYLVLSGLNS--QFLFKAEGDKKVIQHLVSMYNQDPNASLPE-GVN-P-- 202 (373)
Q Consensus 131 ~vFG~~L~~l~~~~~~~~~vP~iv~~~i--~~i~~~gl~~--eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~-~~d-~-- 202 (373)
.+||+|+-+-+.+ ++...|..+..-. +++..+-++. .|+||+++....+.+.++.++..++....+ ... +
T Consensus 20 ~l~glp~Ld~vl~--~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~ 97 (235)
T cd04405 20 QLVGLPLLEELLD--PALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQ 97 (235)
T ss_pred HHcCCccHHHHhc--ccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccc
Confidence 4799987766654 3557777776555 5555555554 799999999999999999998776532111 111 1
Q ss_pred --------hhhHHHHHHHHHhCCCCCCchhhhHHHHhH---------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 017326 203 --------FDVAALAKYYLASLPEPLTTFELYDEIKGA---------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVS 265 (373)
Q Consensus 203 --------~~va~lLK~fLr~LPePLl~~~ly~~~~~~---------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~ 265 (373)
-+|+.+++.||++|||||+|..+|+.+..+ +..+++++.++..||++||+.|+.|+.||.+|+
T Consensus 98 ~~~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~lLLP~enRe~Lq~LL~fl~~va 177 (235)
T cd04405 98 HDMLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLLLLPPASRRELRRLLRFMARAA 177 (235)
T ss_pred cccccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 279999999999999999999999988765 357889999999999999999999999999999
Q ss_pred hcc-------CcCCCChhhHHHhhhhcccCCCCCChhHHHHHhhhhhccccccccCCCCCCccccccchhhhhhcccCCC
Q 017326 266 QKS-------LLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIP 338 (373)
Q Consensus 266 ~~s-------~~NkM~~~nLA~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~ve~li~~~~~~f~~d~~~~~~~~s~~p 338 (373)
++. ..|+| |++..|+|+++++++-+.
T Consensus 178 ~~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~l~~-------------------------------------------- 210 (235)
T cd04405 178 KNDMPRLHKEIENRM---LVKQTFSRAILCSKDLDE-------------------------------------------- 210 (235)
T ss_pred hcCccccccccchHH---HHHHHhhhHhcCccccCH--------------------------------------------
Confidence 984 26777 999999999999995441
Q ss_pred CCCCCCCccchhHHHHHHHHhhhhhcCCCCc
Q 017326 339 LDDGMPIDFGAIEVVQCLMEQHNAIFTDANE 369 (373)
Q Consensus 339 ~~~~~~~~~~~~~vv~~LIe~~~~IF~~~~~ 369 (373)
.+...+|.+||+|+.+||.+|+.
T Consensus 211 --------~~~~~LV~Fmmd~~~~ifkvP~~ 233 (235)
T cd04405 211 --------GLADLLVLFLMDHHQDIFKVPGS 233 (235)
T ss_pred --------HHHHHHHHHHHHcchhhhcCCcc
Confidence 02334899999999999999864
No 55
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.76 E-value=7.9e-18 Score=150.90 Aligned_cols=144 Identities=20% Similarity=0.271 Sum_probs=125.1
Q ss_pred CCHHHHHHHHHHHhcCCCCcCe---EeecCCHHHHHHH-HHHHcCCCCCC-C-------CCCCChhhhHHHHHHHHHhCC
Q 017326 150 VPHILVKCADYLVLSGLNSQFL---FKAEGDKKVIQHL-VSMYNQDPNAS-L-------PEGVNPFDVAALAKYYLASLP 217 (373)
Q Consensus 150 vP~iv~~~i~~i~~~gl~~eGI---FR~~g~~~~i~~l-~~~~~~~~~~~-~-------~~~~d~~~va~lLK~fLr~LP 217 (373)
|=.++..|.++|+.+|+++++| ||.+++...++.+ +..|+.+.... . ....|+|+++++||.++|.||
T Consensus 6 v~~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP 85 (198)
T cd04401 6 VKGLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLP 85 (198)
T ss_pred HHHHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCC
Confidence 3457889999999999999999 9999999999997 55566553221 1 124799999999999999999
Q ss_pred CCCCch-hhhHHHHhHHH----HHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhcccCCC
Q 017326 218 EPLTTF-ELYDEIKGARS----SIHAMRNTLKKL--SNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQK 290 (373)
Q Consensus 218 ePLl~~-~ly~~~~~~~~----~~~~l~~ll~~L--P~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~Ll~~~ 290 (373)
.++++. +.|..|...+. ...+++.++..+ |+.|..++..++.+|..|+.|+..|+|+..||+.+|||.+|..+
T Consensus 86 ~~~v~~~~~Y~~F~~~E~~~~~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~ 165 (198)
T cd04401 86 GSKVIWWEVYEEFKARERRSNYPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKP 165 (198)
T ss_pred CCccCCHHHHHHHHHHHHhcCCcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCC
Confidence 999999 99999998643 256888999888 89999999999999999999999999999999999999999998
Q ss_pred CCC
Q 017326 291 ERK 293 (373)
Q Consensus 291 ~~~ 293 (373)
...
T Consensus 166 ~~~ 168 (198)
T cd04401 166 TGA 168 (198)
T ss_pred Ccc
Confidence 654
No 56
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=99.29 E-value=4.7e-12 Score=122.06 Aligned_cols=164 Identities=21% Similarity=0.315 Sum_probs=131.6
Q ss_pred CCCCCCcccCchhhHHhhhc--CCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCC----------
Q 017326 126 GVASTDVFGVPIEVTVQRQQ--YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN---------- 193 (373)
Q Consensus 126 ~~~~~~vFG~~L~~l~~~~~--~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~---------- 193 (373)
|...+++-|.++...+..++ .+...|-.....+.+.+.+|+-+||++|.+..+++.++++..-+.|..
T Consensus 45 g~~~~~~~~l~~~~~v~~d~e~d~~~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~ 124 (514)
T KOG4370|consen 45 GVAIKRVLGLPLTESVSADPELDGIPLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAA 124 (514)
T ss_pred CCcCChhhcCCCCcccccCcccCCCcCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHH
Confidence 44455666666665544433 456778899999999999999999999999988766666554433211
Q ss_pred ------------------------------CCCCCCCChhhhHHHHHHHHHhCCCCCCchhhhHHHHhH------HHHHH
Q 017326 194 ------------------------------ASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIH 237 (373)
Q Consensus 194 ------------------------------~~~~~~~d~~~va~lLK~fLr~LPePLl~~~ly~~~~~~------~~~~~ 237 (373)
..-.++++|.+||++||.|+|+||+||+|.++-..|..+ ....+
T Consensus 125 ~~~k~~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~ 204 (514)
T KOG4370|consen 125 GLIKRFLRQIPEPVVPIEFPSVARSCIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQN 204 (514)
T ss_pred hHHHHhhhccCCccccccchHHHHHHhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHH
Confidence 001124678999999999999999999999999999876 34677
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhcccCC
Q 017326 238 AMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQ 289 (373)
Q Consensus 238 ~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~Ll~~ 289 (373)
.++.++..||.+||.++.++.-|+..|.+..--|||++.||+|+.+|++=-+
T Consensus 205 efq~llk~Lp~cNyll~swl~lH~d~vi~~e~~~Kln~q~i~i~lspt~q~s 256 (514)
T KOG4370|consen 205 EFQFLLKILPKCNYLLYSWLNLHKDKVIEEEYCLKLNKQQIFINLSPTEQES 256 (514)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhcchhheeeecchHHHHH
Confidence 8999999999999999999999999999989999999999999999987433
No 57
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=99.26 E-value=7.7e-12 Score=130.05 Aligned_cols=147 Identities=23% Similarity=0.256 Sum_probs=129.1
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCcCeEe-ecCCHHHHHHHHHHHcCCCCCCCC-CCCChhhhHHHHHHHHHhCCCC-CCc
Q 017326 146 YGKPVPHILVKCADYLVLSGLNSQFLFK-AEGDKKVIQHLVSMYNQDPNASLP-EGVNPFDVAALAKYYLASLPEP-LTT 222 (373)
Q Consensus 146 ~~~~vP~iv~~~i~~i~~~gl~~eGIFR-~~g~~~~i~~l~~~~~~~~~~~~~-~~~d~~~va~lLK~fLr~LPeP-Ll~ 222 (373)
....||.++..|+.+++.+|+..+|||| ++|....+..++.++.+|...... .+.+... +.++|.|+|.|.+| .++
T Consensus 214 ~~q~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~ 292 (640)
T KOG3565|consen 214 YFQFIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFP 292 (640)
T ss_pred CcccccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCc
Confidence 4679999999999999999999999999 999999999999999988443322 2334444 99999999999999 999
Q ss_pred hhhhHHHHhHH------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhcccCCCCCC
Q 017326 223 FELYDEIKGAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERK 293 (373)
Q Consensus 223 ~~ly~~~~~~~------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~Ll~~~~~~ 293 (373)
++.+..+.++. +....++.++..+|..+..++.++..|+...++.+..|.|++.|+|+||||+++..+...
T Consensus 293 ~e~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~e~~ 369 (640)
T KOG3565|consen 293 FEDFGQPHDCAARDNLLSRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVPEGP 369 (640)
T ss_pred cccccchhhhhhhcCchhhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCcccc
Confidence 99999998874 234678889999999999999999999999999999999999999999999998776543
No 58
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.78 E-value=8e-08 Score=95.66 Aligned_cols=145 Identities=17% Similarity=0.272 Sum_probs=118.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCcCeE---eecCCHHHHHHHHHH-HcCCCCCC---------CCCCCChhhhHHHHHHHHHh
Q 017326 149 PVPHILVKCADYLVLSGLNSQFLF---KAEGDKKVIQHLVSM-YNQDPNAS---------LPEGVNPFDVAALAKYYLAS 215 (373)
Q Consensus 149 ~vP~iv~~~i~~i~~~gl~~eGIF---R~~g~~~~i~~l~~~-~~~~~~~~---------~~~~~d~~~va~lLK~fLr~ 215 (373)
.|=.+|+.|.++|..+|+++++|| |-.-+...++.+... |..+.... .....++|+++++||-.+..
T Consensus 7 ev~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~R 86 (420)
T PF08101_consen 7 EVKDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSR 86 (420)
T ss_pred HHHHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 345678899999999999999998 666778888776665 44444321 11247999999999999999
Q ss_pred CCCCCCchhhhHHHHhHHHH----HHHHHHHH-Hhcc-HHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhcccCC
Q 017326 216 LPEPLTTFELYDEIKGARSS----IHAMRNTL-KKLS-NVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQ 289 (373)
Q Consensus 216 LPePLl~~~ly~~~~~~~~~----~~~l~~ll-~~LP-~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~Ll~~ 289 (373)
||..+++++.|..|...+.. ..+...++ ..|| +.|..++.-++.+|..|+.|+..|+|+..-|+..+|+-.|..
T Consensus 87 Lp~gvVgW~~Y~~Fk~~E~~~~yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~ 166 (420)
T PF08101_consen 87 LPGGVVGWDSYEEFKRREREAGYPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGH 166 (420)
T ss_pred cCCCccccHHHHHHHHHHhhcCCChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCC
Confidence 99999999999999887542 34555555 5664 777889999999999999999999999999999999999988
Q ss_pred CCCC
Q 017326 290 KERK 293 (373)
Q Consensus 290 ~~~~ 293 (373)
....
T Consensus 167 ~~~~ 170 (420)
T PF08101_consen 167 PDFG 170 (420)
T ss_pred CCcc
Confidence 7665
No 59
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=98.27 E-value=4.5e-07 Score=78.04 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=57.7
Q ss_pred hhhhhhhhhhHhhHHHHhhHHHhh-hccchhHHHHH-HHhcCCccccccchhhhhHhh-hhcccccccccccchhhhccc
Q 017326 23 KLREAGQSVGEVAKDAKGNAADVA-ERVGSAVKSRW-ALLQEPSTKHAVQERLISAAA-ITGMFLRRGFSETKDKVAVGK 99 (373)
Q Consensus 23 ~~~~~~~~y~~~~r~~kknlk~ly-vhp~~~~Ks~~-~~~q~~~~~~~~~~~~iS~kf-~tkify~~~lselke~v~~~~ 99 (373)
.+.-..+.|+.|++++++||+++| +||+++.|..+ .+.+ .+++.++ ..|+.|.+++++|.+++...+
T Consensus 66 ~~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~----------~~~~~~~~~~kv~~~~sl~~L~~~i~~~q 135 (149)
T PF13716_consen 66 SLSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLR----------PFVSSKFWKKKVVYVSSLSELSKHIDPSQ 135 (149)
T ss_dssp -HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTT----------TGGGGTT--TTEEEESSTCGGGGTSGGGG
T ss_pred chHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhc----------ccccccccceEEEEECCHHHHHhhCCHHH
Confidence 477788889999999999999999 99999999999 5555 7889999 899999999999999999888
Q ss_pred c--hhhHHH
Q 017326 100 I--KVEEAA 106 (373)
Q Consensus 100 ~--~~~e~~ 106 (373)
+ .++...
T Consensus 136 L~~~lp~~~ 144 (149)
T PF13716_consen 136 LPESLPGVL 144 (149)
T ss_dssp ------HHH
T ss_pred hcccCCCEE
Confidence 7 655433
No 60
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=98.12 E-value=1.3e-06 Score=89.05 Aligned_cols=160 Identities=13% Similarity=0.095 Sum_probs=125.8
Q ss_pred CCCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHH-----HHHcCCCCCCCCCCCChh
Q 017326 129 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLV-----SMYNQDPNASLPEGVNPF 203 (373)
Q Consensus 129 ~~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~-----~~~~~~~~~~~~~~~d~~ 203 (373)
....||+||+..+.. ++..|..+......+...+..++++||..-..+-+.+-. +.-..|..++.. ...+|
T Consensus 413 ~kv~fdaPlS~~c~d---~gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~-sspv~ 488 (741)
T KOG4724|consen 413 AKVPFDAPLSVFCAD---QGKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVP-SSPVH 488 (741)
T ss_pred hhCcCCCchhhcccc---cCCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCC-CCCch
Confidence 456799999998864 456777777788888999999999999855443333222 222234444543 46899
Q ss_pred hhHHHHHHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHH--------HHHhccHHHHHHHHHHHHHHHHHHhccC
Q 017326 204 DVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRN--------TLKKLSNVNFMTLEYVTALLLRVSQKSL 269 (373)
Q Consensus 204 ~va~lLK~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~--------ll~~LP~~n~~~L~~L~~~L~~V~~~s~ 269 (373)
++++++|.|+|++|..++..+.+.+...+ .++.++++. .....|..+.......+.-...++.++.
T Consensus 489 taasv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse 568 (741)
T KOG4724|consen 489 TAASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSE 568 (741)
T ss_pred HHHHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceecccccc
Confidence 99999999999999999999999998877 357788888 7788898888777777777778889999
Q ss_pred cCCCChhhHHHhhhhcccCCCCC
Q 017326 270 LNKMDARSLAMEMAPVIMWQKER 292 (373)
Q Consensus 270 ~NkM~~~nLA~vf~P~Ll~~~~~ 292 (373)
.+.||..|++.|-.|+.+.-...
T Consensus 569 ~~s~dsSn~~~csrpn~~tvd~~ 591 (741)
T KOG4724|consen 569 ETSNDSSNPGFCSRPNALTVDDV 591 (741)
T ss_pred cccccccccCCCCCccccchhhc
Confidence 99999999999999988866543
No 61
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=97.09 E-value=0.00036 Score=76.85 Aligned_cols=226 Identities=17% Similarity=0.153 Sum_probs=154.0
Q ss_pred cccCchhhHHhhhcCCCCCCHHHHH-HHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCC--C--CC--CCChhh
Q 017326 132 VFGVPIEVTVQRQQYGKPVPHILVK-CADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS--L--PE--GVNPFD 204 (373)
Q Consensus 132 vFG~~L~~l~~~~~~~~~vP~iv~~-~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~--~--~~--~~d~~~ 204 (373)
++|+++..+..........|.++.+ |.......|....|+||.+|....+...+..++...... . .. ..++..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~ 541 (918)
T KOG1453|consen 462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNL 541 (918)
T ss_pred ccccCccccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchh
Confidence 7888888763212245678888888 778888899999999999999999999999998665211 1 11 234556
Q ss_pred hHHHHHHHHHhC--CCCCCchhhhHHHHhH----------------------HHHH-------HHHHHHHH----hccHH
Q 017326 205 VAALAKYYLASL--PEPLTTFELYDEIKGA----------------------RSSI-------HAMRNTLK----KLSNV 249 (373)
Q Consensus 205 va~lLK~fLr~L--PePLl~~~ly~~~~~~----------------------~~~~-------~~l~~ll~----~LP~~ 249 (373)
..+.++.++|.+ |.+....+.|..+... .+++ ..+..+.. .+|..
T Consensus 542 ~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~~~~~e~~~vP~i 621 (918)
T KOG1453|consen 542 HSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSELARYEPSTVPFI 621 (918)
T ss_pred ccCcchhhhhcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHHhhccCCCCCCHH
Confidence 677999999999 9998888888877632 1234 67778888 99999
Q ss_pred HHHHHHHHHHHHHHHHhccCcC-CCCh-hhHHHhhhh----cccCCCCCChhHHHHHhhhhhccccccccCCCC--CCcc
Q 017326 250 NFMTLEYVTALLLRVSQKSLLN-KMDA-RSLAMEMAP----VIMWQKERKPEFYRQYWNHASRSSSKNMEPATP--HGEW 321 (373)
Q Consensus 250 n~~~L~~L~~~L~~V~~~s~~N-kM~~-~nLA~vf~P----~Ll~~~~~~~~~~~~~~~~~~~~~~~~ve~li~--~~~~ 321 (373)
...++.++..|+.++.-....| .|+. +||..+|++ +++...+... +......- ..++.+++|. .++-
T Consensus 622 ~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~--vtsVlK~y---Lr~Lp~pIi~f~~y~~ 696 (918)
T KOG1453|consen 622 LKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHA--VTSVLKLY---LRKLPEPIIIFNLYDE 696 (918)
T ss_pred HHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHH--HHHHHHHH---HHhccccccccchHHH
Confidence 9999999999999999988888 8888 999999999 6666654432 22222211 2235555553 2455
Q ss_pred ccccchhhhhhc---ccCCCCCC----CCCCccchhHHHHHHHHhhhhh
Q 017326 322 DMLADESEEMDA---SSAIPLDD----GMPIDFGAIEVVQCLMEQHNAI 363 (373)
Q Consensus 322 ~f~~d~~~~~~~---~s~~p~~~----~~~~~~~~~~vv~~LIe~~~~I 363 (373)
|+...+..+-+. .+ -++.. .......+.+|.+.||.|-..|
T Consensus 697 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~LP~~~~~vl~~li~Hl~RV 744 (918)
T KOG1453|consen 697 FLSAAKLPEKDEPSRST-EPLRKLKEVLEQLPRAHYEVLRRLIAHLKRV 744 (918)
T ss_pred HHhhhcccccccccccc-ccchhHHHHHHhcCHhHHHHHHHHHHHHHHH
Confidence 555433311111 11 01110 1133455677888888886544
No 62
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=95.85 E-value=0.0021 Score=65.37 Aligned_cols=75 Identities=20% Similarity=0.053 Sum_probs=56.9
Q ss_pred HHHHHHHHhccCcCCCChhhHHHhhhhcccCCCCCChhHHH---HHh-hhhhccccccccCCCCCCccccccchhhhhh
Q 017326 258 TALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYR---QYW-NHASRSSSKNMEPATPHGEWDMLADESEEMD 332 (373)
Q Consensus 258 ~~~L~~V~~~s~~NkM~~~nLA~vf~P~Ll~~~~~~~~~~~---~~~-~~~~~~~~~~ve~li~~~~~~f~~d~~~~~~ 332 (373)
++||..|+.++....|.+.|||+||+|+|+|++..+...+. ..+ --..+.++.++|.+.+|.|.+|+.--++.+.
T Consensus 1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrskeies~lcs~~~GdaAf~avq~qsvV~EfilnhvDvlF~~~a~g~~~ 79 (670)
T KOG1449|consen 1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKEIESSLCSHLWGDAAFSAVQAQSVVSEFILNHVDVLFLPTAGGPSV 79 (670)
T ss_pred CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHHHHHhhhccccccHHHHHHHhhhhhhhhcccccceecCCcCCcccc
Confidence 36899999999999999999999999999998866554443 111 1124556778899999999999865554443
No 63
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=95.66 E-value=0.0059 Score=51.57 Aligned_cols=62 Identities=8% Similarity=0.018 Sum_probs=54.1
Q ss_pred hhhhhhhHhhHHHHhhHHHhh-hccchhHHHHHHHhcCCccccccchhhhhHhhhhccccccc-ccccchhhhc
Q 017326 26 EAGQSVGEVAKDAKGNAADVA-ERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRG-FSETKDKVAV 97 (373)
Q Consensus 26 ~~~~~y~~~~r~~kknlk~ly-vhp~~~~Ks~~~~~q~~~~~~~~~~~~iS~kf~tkify~~~-lselke~v~~ 97 (373)
-....+..+...|..|++.+| +||+++++..|..++ ++++.++..|+.+.+. .+++.+++.-
T Consensus 84 ~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~----------~~l~~~~~~ki~~~~~~~~~L~~~i~~ 147 (157)
T cd00170 84 LLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVK----------PFLSEKTRKKIVFLGSDKEELLKYIDK 147 (157)
T ss_pred HHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHH----------HhcCHhhhhhEEEecCCHHHHHhhCCh
Confidence 455668899999999999999 999999999999999 9999999999998877 6667666653
No 64
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=95.33 E-value=0.00094 Score=67.82 Aligned_cols=180 Identities=14% Similarity=0.130 Sum_probs=123.7
Q ss_pred CCCCcccCchhhHHhhhcCCCCCCH-HHHHHHHHHHh---cC--CCCcCeEeecCCHHHHHHHHHHHcCCCCCCCC---C
Q 017326 128 ASTDVFGVPIEVTVQRQQYGKPVPH-ILVKCADYLVL---SG--LNSQFLFKAEGDKKVIQHLVSMYNQDPNASLP---E 198 (373)
Q Consensus 128 ~~~~vFG~~L~~l~~~~~~~~~vP~-iv~~~i~~i~~---~g--l~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~---~ 198 (373)
.....||.-|..+... .++.||. .+.+||.-+.. ++ .+..|.|++..+ .|...+.. -
T Consensus 205 ~~~~~~gl~ltr~~~~--~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~D------------~gae~d~~af~~ 270 (670)
T KOG1449|consen 205 DSNLNCGLVLTRMEVG--LGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVED------------EGAEVDGEAFRW 270 (670)
T ss_pred ccCccccceecceeec--cccccchhhhccchhccccchhccCCcccCcceecccc------------ccccccccccCC
Confidence 3556677766655433 4779998 78888877765 22 455677777653 34443321 1
Q ss_pred CCChhhhHHHHHHHHHhCCCCCCchhhhHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhH
Q 017326 199 GVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSL 278 (373)
Q Consensus 199 ~~d~~~va~lLK~fLr~LPePLl~~~ly~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nL 278 (373)
..|+..+..+++-|.+.+|.|+.. ..|+.=-.....++.++--+..+++.|+.+-.+|..||.+...-. .++
T Consensus 271 p~di~v~S~d~dp~s~Q~~pp~~~-~~~~k~Ds~s~sv~~~~~~~~~~se~~~r~a~~lse~ft~~~~~~-------~s~ 342 (670)
T KOG1449|consen 271 PSDIVVESWDMDPYSRQLPPPYPK-EAFEKEDSLSESVESLRFSLETMSEAHYRTAKFLSEHFTRLCKSK-------KSL 342 (670)
T ss_pred ccceeeeccccChhhhhcCCCCcc-cccccccCcccceeeeccccccCCcccchHhhhhchhhhhhcccc-------ccc
Confidence 357888899999999999999544 333322222345666666777899999999999999998877632 799
Q ss_pred HHhhhhcccCCCCCChhHHHHHhhhhhccccccccCCCCCCccccccchhhh
Q 017326 279 AMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEE 330 (373)
Q Consensus 279 A~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~ve~li~~~~~~f~~d~~~~ 330 (373)
+|++.|+++|++. +.+....+.-....-+..+..+.|.+++-.|..|-+++
T Consensus 343 ~I~~~~~~~r~pp-tL~~~~~h~~~~~~~~~~~~~~~~e~s~~~~~~~i~~e 393 (670)
T KOG1449|consen 343 AIVWSPNLFRPPP-TLNGADTHLLSGLNVHTAICDFFIENSESLFVNDIDEE 393 (670)
T ss_pred eeecCCCCCCCCC-CCCchhhhhcccCCcceeecccchhhhhhhhhcccChh
Confidence 9999999999986 33333333333344456677888888888888776654
No 65
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=95.08 E-value=0.014 Score=49.85 Aligned_cols=62 Identities=6% Similarity=0.046 Sum_probs=51.9
Q ss_pred hhhhhhhhhHhhHHHHhhHHHhh-hccchhHHHHHHHhcCCccccccchhhhhHhhhhccccccc--ccccchhh
Q 017326 24 LREAGQSVGEVAKDAKGNAADVA-ERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRG--FSETKDKV 95 (373)
Q Consensus 24 ~~~~~~~y~~~~r~~kknlk~ly-vhp~~~~Ks~~~~~q~~~~~~~~~~~~iS~kf~tkify~~~--lselke~v 95 (373)
.+-....+..+...|..+++++| +||+++.++.|.+++ +++++++.+|+.+... .+++.+++
T Consensus 80 ~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~----------~~l~~~~~~ki~~~~~~~~~~L~~~i 144 (158)
T smart00516 80 LSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIK----------PFLDEKTREKIRFVGNDSKEELLEYI 144 (158)
T ss_pred HHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHH----------hhcChhhhccEEEeCCCCHHHHHhhC
Confidence 44556668889999999999999 999999999999999 9999999999988776 44444444
No 66
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=93.32 E-value=0.11 Score=56.06 Aligned_cols=141 Identities=14% Similarity=0.028 Sum_probs=97.1
Q ss_pred CCCCHHHHHHHHHHHhcCCCCcC---eEeecC-CHHHHHHHHHHHcCCCCC--CCCCCCChh--hhHHHHH--HHHHhCC
Q 017326 148 KPVPHILVKCADYLVLSGLNSQF---LFKAEG-DKKVIQHLVSMYNQDPNA--SLPEGVNPF--DVAALAK--YYLASLP 217 (373)
Q Consensus 148 ~~vP~iv~~~i~~i~~~gl~~eG---IFR~~g-~~~~i~~l~~~~~~~~~~--~~~~~~d~~--~va~lLK--~fLr~LP 217 (373)
..-|.+..+.+.+|+..|+..|| |-|.++ +...|+.=...|+.++.. ...+..+|| .|...++ .-||.++
T Consensus 369 d~sp~~~~knL~~l~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~ph~s~v~e~Ie~~~~lr~~~ 448 (1100)
T KOG4271|consen 369 DGSPNIDEKNLVILGKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQPHLSYVGESIEKSHSLRQQG 448 (1100)
T ss_pred cCCcccchhhhhhhhhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcCcchhHHHhhhhhhhhhhhcc
Confidence 46799999999999999999999 889888 666666655556433322 233345788 3555565 5577777
Q ss_pred CCCCchhhhHHHHhH--------HHHHHHHHH-HHHh--ccHHHHH----HHHHHHHHHHHHHhccCcCCCChh-hHHHh
Q 017326 218 EPLTTFELYDEIKGA--------RSSIHAMRN-TLKK--LSNVNFM----TLEYVTALLLRVSQKSLLNKMDAR-SLAME 281 (373)
Q Consensus 218 ePLl~~~ly~~~~~~--------~~~~~~l~~-ll~~--LP~~n~~----~L~~L~~~L~~V~~~s~~NkM~~~-nLA~v 281 (373)
..+.+......+..+ ..++..+.. ++.. -|.+|+. ++..++..+.-++.++..|.|++. .-|.|
T Consensus 449 ~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s~aC 528 (1100)
T KOG4271|consen 449 QQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLASAAC 528 (1100)
T ss_pred cccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHHHHh
Confidence 666665544443332 235555544 4444 5777776 666666667777889999999998 88899
Q ss_pred hhhc-ccC
Q 017326 282 MAPV-IMW 288 (373)
Q Consensus 282 f~P~-Ll~ 288 (373)
.+|- +++
T Consensus 529 kS~~llL~ 536 (1100)
T KOG4271|consen 529 KSPHLLLR 536 (1100)
T ss_pred cChHHHHh
Confidence 9994 665
No 67
>PF10928 DUF2810: Protein of unknown function (DUF2810); InterPro: IPR021230 This is a bacterial family of uncharacterised proteins. This entry contains YibL (P0ADK8 from SWISSPROT), which comigrates with the mature 50S ribosome subunit. It either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2LF0_A.
Probab=52.43 E-value=6.2 Score=27.34 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=21.7
Q ss_pred ccccchhhhhhhhhhhHhhHHHHhhHHHhh-hccchh
Q 017326 17 FSSSGSKLREAGQSVGEVAKDAKGNAADVA-ERVGSA 52 (373)
Q Consensus 17 ~~~~~~~~~~~~~~y~~~~r~~kknlk~ly-vhp~~~ 52 (373)
|||-=+|.++|--- ++||.++-|. |||-..
T Consensus 7 F~R~iTK~EQAdmG------kLKKsVrGLvvVHPmTa 37 (54)
T PF10928_consen 7 FSRAITKKEQADMG------KLKKSVRGLVVVHPMTA 37 (54)
T ss_dssp EEEE--HHHHHTHH------HHHHHTTS-EEE-SSSH
T ss_pred cchhhhHHHHHhHH------HHHhhhceeEEEechHH
Confidence 78888888888765 8999999999 999654
No 68
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=52.15 E-value=10 Score=31.97 Aligned_cols=46 Identities=7% Similarity=0.152 Sum_probs=34.7
Q ss_pred hHhhHHHHhhHHHhh-hccchhHHHHHHHhcCCccccccchhhhhHhhhhccccccc
Q 017326 32 GEVAKDAKGNAADVA-ERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRG 87 (373)
Q Consensus 32 ~~~~r~~kknlk~ly-vhp~~~~Ks~~~~~q~~~~~~~~~~~~iS~kf~tkify~~~ 87 (373)
..+...|=-.++.+| ++++++.++.|.+++ ++++++...|+.+...
T Consensus 90 ~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~----------~~l~~~~~~ki~~~~~ 136 (159)
T PF00650_consen 90 QLLQDHYPERLGKIYIINAPWFFRVLWKIVK----------PFLSPKTREKIVFHSG 136 (159)
T ss_dssp HHHHHHSTTTEEEEEEES--TTHHHHHHHHG----------GGS-HHHHCTEEEECT
T ss_pred hhhcccCCccceeEEEEecChhhhhhHhHHH----------hhcCHhhheeEEEECC
Confidence 334445556788899 999999999999999 9999999999887643
No 69
>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]
Probab=51.88 E-value=14 Score=30.14 Aligned_cols=38 Identities=11% Similarity=0.027 Sum_probs=29.5
Q ss_pred HHHhhhccccccchhhhhhhhh------hhHhhHHHHh-hHHHhh
Q 017326 9 WQEKASEFFSSSGSKLREAGQS------VGEVAKDAKG-NAADVA 46 (373)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~------y~~~~r~~kk-nlk~ly 46 (373)
|-+.|.||+.+.++.++.|.|+ |.--||+-|| +..+||
T Consensus 17 iLK~AKG~~G~r~~~~r~Akq~v~ka~~yaYrdRr~rKRdFR~LW 61 (118)
T COG0292 17 ILKLAKGYRGARSRLYRVAKQAVMKALQYAYRDRRQRKRDFRKLW 61 (118)
T ss_pred HHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 6678999999999999999998 6666776654 334444
No 70
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=39.16 E-value=16 Score=39.07 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=36.4
Q ss_pred hHHHh----hhccccccchhhhhhhhhhhHhhHHHHhhHHHhh-hc
Q 017326 8 PWQEK----ASEFFSSSGSKLREAGQSVGEVAKDAKGNAADVA-ER 48 (373)
Q Consensus 8 ~~~~~----~~~~~~~~~~~~~~~~~~y~~~~r~~kknlk~ly-vh 48 (373)
.|.++ -..+|+.-|..|++|.|.|..||-.+|++|+... .+
T Consensus 330 lWt~~G~krL~~lLAkMGisL~~~~Q~y~~Md~~~K~~L~~~l~~~ 375 (622)
T PF02724_consen 330 LWTEKGRKRLHKLLAKMGISLKQAQQKYSYMDMELKRELREKLEKY 375 (622)
T ss_pred hhhhhhHHHHHHHHHHhCCcHHHHcCCchhCCHHHHHHHHHHHHHH
Confidence 57654 6789999999999999999999999999999988 55
No 71
>COG4835 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.10 E-value=44 Score=27.21 Aligned_cols=45 Identities=20% Similarity=0.102 Sum_probs=31.9
Q ss_pred CeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHHHHhC
Q 017326 170 FLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASL 216 (373)
Q Consensus 170 GIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~L 216 (373)
.=|+++|..+++..++..+-.. ...+ ...++..+|.=|-.++..|
T Consensus 62 enfvisG~ISqi~~i~~~iv~e-~sel-eqeeve~La~Plld~lkRL 106 (124)
T COG4835 62 ENFVISGRISQINQIKDRIVKE-PSEL-EQEEVEGLAAPLLDMLKRL 106 (124)
T ss_pred eeeEEeeehHHHHHHHhHhccC-HHHh-hHHHHHHHHHHHHHHHHHh
Confidence 4599999999999999988422 2222 3457777777777777664
No 72
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=28.41 E-value=1.1e+02 Score=22.76 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=29.8
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHh
Q 017326 236 IHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME 281 (373)
Q Consensus 236 ~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~v 281 (373)
+..++.....|++..+.+..|++.+...+.. |++..||.-
T Consensus 4 ~~~i~~~~~~ls~~e~~Ia~yil~~~~~~~~------~si~elA~~ 43 (77)
T PF01418_consen 4 LEKIRSQYNSLSPTEKKIADYILENPDEIAF------MSISELAEK 43 (77)
T ss_dssp HHHHHHHGGGS-HHHHHHHHHHHH-HHHHCT--------HHHHHHH
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHhCHHHHHH------ccHHHHHHH
Confidence 4567777889999999999999999988876 778888754
No 73
>PF04556 DpnII: DpnII restriction endonuclease; InterPro: IPR007637 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry is found in type II restriction enzymes such as DpmII (3.1.21.4 from EC), which recognises the double-stranded unmethylated sequence GATC and cleave before G-1 [], where it encompasess the full length of the protein. It is also found in a number of proteins of unknown function, where it is located adjacent to a DNA adenine-specific methyltransferase domain (IPR012327 from INTERPRO).; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=28.17 E-value=36 Score=32.65 Aligned_cols=33 Identities=36% Similarity=0.485 Sum_probs=28.4
Q ss_pred hccccccchhhhhhhhhhhHhhHHHH--hhHHHhh
Q 017326 14 SEFFSSSGSKLREAGQSVGEVAKDAK--GNAADVA 46 (373)
Q Consensus 14 ~~~~~~~~~~~~~~~~~y~~~~r~~k--knlk~ly 46 (373)
.+||+..|+|+.|..-+|.++..+.+ .|.+=+|
T Consensus 213 ~NFY~~gGSKlne~ArsY~~la~~~~~~~~~~FvW 247 (286)
T PF04556_consen 213 TNFYGSGGSKLNETARSYKELAQEIKSIDGFEFVW 247 (286)
T ss_pred EeeecCCCCcHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 47999999999999999999999987 5555555
No 74
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=27.96 E-value=87 Score=23.53 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=32.3
Q ss_pred CcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHHHHhCCC
Q 017326 168 SQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPE 218 (373)
Q Consensus 168 ~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~LPe 218 (373)
.+|-|+++|+.. ++.+.+.++-. +++ .+.+++++++-..|..+|.
T Consensus 4 ~~~~~~v~G~~~-l~~l~~~~~~~----l~~-~~~~Tl~G~i~~~l~~iP~ 48 (81)
T PF03471_consen 4 DDGTYIVSGSTP-LDDLNELLGLD----LPE-EDYDTLGGLILEQLGRIPE 48 (81)
T ss_dssp TTSEEEEETTSB-HHHHHHHHTS-----TTT-TTTSBHHHHHHHHHTSS--
T ss_pred cCCEEEEEecCC-HHHHHHHHCcC----CCc-cchhhHHHHHHHHcCCCCC
Confidence 368899999754 66777777542 333 4777999999999999886
No 75
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=27.68 E-value=2e+02 Score=29.23 Aligned_cols=33 Identities=27% Similarity=0.525 Sum_probs=26.9
Q ss_pred CChhhhHHHHHHHHHhCCCCCCchhhhHHHHhH
Q 017326 200 VNPFDVAALAKYYLASLPEPLTTFELYDEIKGA 232 (373)
Q Consensus 200 ~d~~~va~lLK~fLr~LPePLl~~~ly~~~~~~ 232 (373)
.|+|+.++..|.|++..|||.+|-++-.-+.++
T Consensus 118 aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~C 150 (514)
T KOG4370|consen 118 ADAHDAAGLIKRFLRQIPEPVVPIEFPSVARSC 150 (514)
T ss_pred HHHHHHHhHHHHhhhccCCccccccchHHHHHH
Confidence 589999999999999999999996654444333
No 76
>PF12491 ApoB100_C: Apolipoprotein B100 C terminal; InterPro: IPR022176 This domain family is found in eukaryotes, and is approximately 60 amino acids in length. There are two conserved sequence motifs: QLS and LIDL. ApoB100 has an essential role in the assembly and secretion of triglyceride-rich lipoproteins and lipids transport.
Probab=27.16 E-value=2.4e+02 Score=20.20 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=18.7
Q ss_pred HHHHHHhccHHHH-HHHHHHHHHHHHHHh
Q 017326 239 MRNTLKKLSNVNF-MTLEYVTALLLRVSQ 266 (373)
Q Consensus 239 l~~ll~~LP~~n~-~~L~~L~~~L~~V~~ 266 (373)
-+.+|+ |.-.|+ ..|+|++.+|+++..
T Consensus 24 skrLID-LsIqnY~~Fl~yi~eLL~~lq~ 51 (58)
T PF12491_consen 24 SKRLID-LSIQNYHMFLRYITELLKELQS 51 (58)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 555565 678999999998876
No 77
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=25.15 E-value=54 Score=31.37 Aligned_cols=50 Identities=2% Similarity=0.095 Sum_probs=37.5
Q ss_pred HHHhhHHHhh-hccchhHHHHHHHhcCCccccccchhhhhHhhhhccc--ccccccccchhhh
Q 017326 37 DAKGNAADVA-ERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMF--LRRGFSETKDKVA 96 (373)
Q Consensus 37 ~~kknlk~ly-vhp~~~~Ks~~~~~q~~~~~~~~~~~~iS~kf~tkif--y~~~lselke~v~ 96 (373)
-|=..+++.+ ++..++....|.+++ ++++.+...|++ ..+...++.+++.
T Consensus 193 ~yPe~l~~~~iIN~P~~f~~~~~~ik----------pfL~~kt~~ki~~~~~~~~~~L~k~i~ 245 (317)
T KOG1471|consen 193 NYPERLKRIHIINAPTIFSALWKVVK----------PFLDEKTRKKIHVLHSKDKESLLKYIP 245 (317)
T ss_pred hCHHhhceEEEEcCchhHHHHHHHHh----------ccCCHHHHhhheecCCCchhhhhhhCC
Confidence 3447899999 999999999999999 999988888876 2333444444443
No 78
>PF13606 Ank_3: Ankyrin repeat
Probab=24.59 E-value=40 Score=20.38 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=12.5
Q ss_pred ccchhHHHHHHHHhh
Q 017326 346 DFGAIEVVQCLMEQH 360 (373)
Q Consensus 346 ~~~~~~vv~~LIe~~ 360 (373)
..+++|+|++||++.
T Consensus 11 ~~g~~e~v~~Ll~~g 25 (30)
T PF13606_consen 11 SNGNIEIVKYLLEHG 25 (30)
T ss_pred HhCCHHHHHHHHHcC
Confidence 357889999999985
No 79
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=24.08 E-value=83 Score=30.74 Aligned_cols=73 Identities=5% Similarity=0.087 Sum_probs=57.8
Q ss_pred hhccccccchhhhhhhhhhhHhhHHHHhhHHHhh-hccchhHHHHHHHhcCCccccccchhhhhHhhhhccccccccccc
Q 017326 13 ASEFFSSSGSKLREAGQSVGEVAKDAKGNAADVA-ERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRGFSET 91 (373)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~y~~~~r~~kknlk~ly-vhp~~~~Ks~~~~~q~~~~~~~~~~~~iS~kf~tkify~~~lsel 91 (373)
..| ||.+..-++-+..+-..|-.-|=..|-..+ +||.|+....|-+.+ +++-++-.+|+.+.....++
T Consensus 158 ~~~-fs~sN~d~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiik----------pflDp~t~~Kv~F~~~~~~l 226 (324)
T KOG1470|consen 158 LTG-FSMSNPDIKFLKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIK----------PFLDPKTASKVKFVEPKDDL 226 (324)
T ss_pred ccc-CcccCCCcHHHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhh----------hccChhhhceeEEecChhHH
Confidence 345 555677777777777777777778898888 999999999999999 99999988999887776654
Q ss_pred chhhh
Q 017326 92 KDKVA 96 (373)
Q Consensus 92 ke~v~ 96 (373)
.+++.
T Consensus 227 ~~~~d 231 (324)
T KOG1470|consen 227 SEYFD 231 (324)
T ss_pred HhhCC
Confidence 44444
No 80
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=23.42 E-value=1.7e+02 Score=31.26 Aligned_cols=41 Identities=7% Similarity=0.000 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHH
Q 017326 234 SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM 280 (373)
Q Consensus 234 ~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~ 280 (373)
.-++.++.....|++..+.+..|++.+...|.. ||+..||.
T Consensus 342 ~l~~~I~~~~~~Lt~~E~~IA~yIl~n~~~v~~------~si~eLA~ 382 (638)
T PRK14101 342 AVFERIRQMRDALTPAERRVADLALNHPRSIIN------DPIVDIAR 382 (638)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHhCHHHHHh------ccHHHHHH
Confidence 346778888999999999999999999988876 66666664
No 81
>PRK11020 hypothetical protein; Provisional
Probab=22.33 E-value=36 Score=27.84 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=22.9
Q ss_pred ccccchhhhhhhhhhhHhhHHHHhhHHHhh-hccchh
Q 017326 17 FSSSGSKLREAGQSVGEVAKDAKGNAADVA-ERVGSA 52 (373)
Q Consensus 17 ~~~~~~~~~~~~~~y~~~~r~~kknlk~ly-vhp~~~ 52 (373)
|+|-=+|.++|--- ++||.++-|. |||-..
T Consensus 70 F~R~iTK~EQADMG------kLKKSVrGLVVVHPMTa 100 (118)
T PRK11020 70 FSRAITKKEQADMG------KLKKSVRGLVVVHPMTA 100 (118)
T ss_pred cchhccHHHHHhHH------HHhhcccceeEecCchH
Confidence 66666677666543 8999999999 999654
No 82
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=20.69 E-value=74 Score=29.85 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=21.3
Q ss_pred HhhhhccchHhh----HHHhhcCCCCCCcccCchhh
Q 017326 108 KTAQKSKTILTD----IERWQKGVASTDVFGVPIEV 139 (373)
Q Consensus 108 ~~~~k~~~~~~~----~~~~~~~~~~~~vFG~~L~~ 139 (373)
..|+++.+++.. +..........++||+||++
T Consensus 210 eYHr~a~e~Le~~~p~i~~~~~~~~~k~~fg~~lee 245 (246)
T cd07618 210 DYHRKALAVIEKVLPEIQAHQDKWMEKPAFGTPLEE 245 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCccc
Confidence 446665555443 44555566788999999986
Done!