Query 017326
Match_columns 373
No_of_seqs 313 out of 1679
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 12:37:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017326.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017326hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3byi_A RHO GTPase activating p 100.0 1.7E-44 5.7E-49 329.9 19.7 169 124-294 11-187 (214)
2 1tx4_A P50-rhogap; complex (GT 100.0 1.3E-44 4.6E-49 326.7 18.2 166 127-292 3-173 (198)
3 1ow3_A RHO-GTPase-activating p 100.0 1.8E-44 6.3E-49 335.4 18.2 199 126-371 38-241 (242)
4 3iug_A RHO/CDC42/RAC GTPase-ac 100.0 4.6E-44 1.6E-48 330.2 18.7 204 126-372 15-227 (229)
5 2osa_A N-chimaerin; RHO-GAP, G 100.0 6.2E-44 2.1E-48 323.2 18.8 164 129-294 5-177 (202)
6 2ee4_A RHO GTPase activating p 100.0 6.8E-44 2.3E-48 324.6 16.0 165 126-293 6-177 (209)
7 3msx_B RHO GTPase-activating p 100.0 2.3E-43 8E-48 319.2 18.1 162 128-294 8-175 (201)
8 1pbw_A Rhogap domain, phosphat 100.0 8.8E-44 3E-48 325.5 12.7 163 130-294 5-177 (216)
9 3fk2_A Glucocorticoid receptor 100.0 6E-43 2.1E-47 326.0 17.4 166 126-294 47-219 (246)
10 1f7c_A Rhogap protein; GTPase 100.0 5E-43 1.7E-47 323.6 12.5 196 129-370 15-222 (231)
11 3kuq_A RHO GTPase-activating p 100.0 3.2E-41 1.1E-45 310.9 17.9 168 125-294 13-186 (228)
12 2ovj_A Mgcracgap, RAC GTPase-a 100.0 7.1E-41 2.4E-45 302.9 17.8 156 135-293 4-166 (201)
13 3eap_A RHO GTPase-activating p 100.0 3.9E-41 1.3E-45 317.9 14.3 164 127-293 59-228 (271)
14 3cxl_A N-chimerin; SH2, RHO-GA 100.0 3.2E-41 1.1E-45 341.2 13.1 194 98-294 236-438 (463)
15 2xs6_A Phosphatidylinositol 3- 100.0 1.1E-39 3.7E-44 297.4 7.8 156 129-293 19-177 (214)
16 3qis_A Inositol polyphosphate 100.0 4.8E-36 1.7E-40 294.3 14.9 163 129-293 141-340 (366)
17 3pg7_A Neurofibromin; SEC lipi 98.5 1.4E-08 4.8E-13 94.3 1.0 97 6-111 52-155 (256)
18 3peg_A Neurofibromin; SEC14 do 97.5 2.3E-05 8E-10 73.8 1.2 89 6-104 71-167 (290)
19 1r5l_A Alpha-TTP, protein (alp 77.0 0.58 2E-05 42.2 0.5 57 30-96 163-222 (262)
20 3hx3_A Retinaldehyde-binding p 69.7 1.3 4.6E-05 41.4 1.1 49 27-85 219-268 (316)
21 1aua_A Phosphatidylinositol tr 67.5 2 6.8E-05 39.6 1.7 53 34-96 198-253 (296)
22 1olm_A SEC14-like protein 2; l 56.7 3.7 0.00013 39.6 1.5 59 28-96 172-233 (403)
23 3q8g_A CRAL-TRIO domain-contai 48.9 4.1 0.00014 38.2 0.4 53 34-96 213-268 (320)
24 4h5l_A Nucleoprotein; nucleoca 36.6 1E+02 0.0035 27.7 7.5 100 177-284 19-118 (253)
25 3iwf_A Transcription regulator 25.3 79 0.0027 24.3 4.3 40 236-281 5-44 (107)
26 3a8p_A T-lymphoma invasion and 25.1 5.2 0.00018 36.5 -3.2 38 147-184 209-246 (263)
27 2lf0_A Uncharacterized protein 23.5 20 0.00069 28.3 0.4 30 17-52 75-105 (123)
28 2p4p_A Hypothetical protein HD 23.1 78 0.0027 23.0 3.7 48 168-219 7-54 (86)
29 4a6h_A Phosphatidylinositol 4, 23.0 1.6 5.4E-05 34.9 -6.3 57 48-106 2-58 (120)
30 2o3f_A Putative HTH-type trans 23.0 99 0.0034 23.7 4.5 38 237-280 10-47 (111)
31 2p13_A CBS domain; alpha-beta 21.0 97 0.0033 22.7 3.9 47 168-219 13-60 (90)
No 1
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=100.00 E-value=1.7e-44 Score=329.87 Aligned_cols=169 Identities=22% Similarity=0.419 Sum_probs=156.0
Q ss_pred hcCCCCCCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCC--CCC
Q 017326 124 QKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE--GVN 201 (373)
Q Consensus 124 ~~~~~~~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~--~~d 201 (373)
.++..+.++||++|+++++++ +..||.+|.+|+++|+++|+++|||||++|+.+++++|++.+|+|...++.. ..|
T Consensus 11 ~~~~~~~~vFG~~L~~~~~~~--~~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~d 88 (214)
T 3byi_A 11 EKGLIKDQIFGSHLHKVCERE--NSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWED 88 (214)
T ss_dssp HHTSCCCCSTTSCHHHHHHHH--TCSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGGCS
T ss_pred hcCCCcCCccCCcHHHHHHHc--CCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCcccccc
Confidence 367778899999999999876 4689999999999999999999999999999999999999999998776643 259
Q ss_pred hhhhHHHHHHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCCh
Q 017326 202 PFDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDA 275 (373)
Q Consensus 202 ~~~va~lLK~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~ 275 (373)
+|+||++||.|||+||+||+|.++|+.|+++ .+++..++.++.+||+.|+.+|.||+.||++|++|++.|+||+
T Consensus 89 vh~va~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~ 168 (214)
T 3byi_A 89 IHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMST 168 (214)
T ss_dssp HHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCH
T ss_pred hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccCCCCCH
Confidence 9999999999999999999999999999886 3578899999999999999999999999999999999999999
Q ss_pred hhHHHhhhhcccCCCCCCh
Q 017326 276 RSLAMEMAPVIMWQKERKP 294 (373)
Q Consensus 276 ~nLA~vf~P~Ll~~~~~~~ 294 (373)
+|||+||||+|+|++..+.
T Consensus 169 ~NLa~vf~P~Ll~~~~~~~ 187 (214)
T 3byi_A 169 QSLGIVFGPTLLRAENETG 187 (214)
T ss_dssp HHHHHHHHHHHHCCTTSSS
T ss_pred HHhHHHhccccCCCCCccH
Confidence 9999999999999987653
No 2
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=100.00 E-value=1.3e-44 Score=326.66 Aligned_cols=166 Identities=27% Similarity=0.476 Sum_probs=153.9
Q ss_pred CCCCCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhH
Q 017326 127 VASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVA 206 (373)
Q Consensus 127 ~~~~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va 206 (373)
..+.++||++|++++++++....||.+|.+|+++|+++|+++|||||++|+.+++++|++.+|+|...++....|+|++|
T Consensus 3 ~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~~a 82 (198)
T 1tx4_A 3 PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLPA 82 (198)
T ss_dssp CCTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHHH
T ss_pred CCCCCccCCcHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCccccccchHHH
Confidence 45678999999999987654458999999999999999999999999999999999999999999887765556999999
Q ss_pred HHHHHHHHhCCCCCCchhhhHHHHhH-----HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHh
Q 017326 207 ALAKYYLASLPEPLTTFELYDEIKGA-----RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME 281 (373)
Q Consensus 207 ~lLK~fLr~LPePLl~~~ly~~~~~~-----~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~v 281 (373)
++||.|||+||+||+|.++|+.|+++ .++++.++.++.+||+.|+.+|.||+.||++|++|++.||||++|||+|
T Consensus 83 ~lLK~flreLpePLi~~~l~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~v 162 (198)
T 1tx4_A 83 VILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVV 162 (198)
T ss_dssp HHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHCCCcCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHhh
Confidence 99999999999999999999999886 3578899999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCC
Q 017326 282 MAPVIMWQKER 292 (373)
Q Consensus 282 f~P~Ll~~~~~ 292 (373)
|||+|+|+++.
T Consensus 163 f~P~Ll~~~~~ 173 (198)
T 1tx4_A 163 FGPNLLWAKDA 173 (198)
T ss_dssp HHHHHCCCSSH
T ss_pred hcccccCCCCc
Confidence 99999999854
No 3
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=100.00 E-value=1.8e-44 Score=335.40 Aligned_cols=199 Identities=24% Similarity=0.423 Sum_probs=169.3
Q ss_pred CCCCCCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhh
Q 017326 126 GVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDV 205 (373)
Q Consensus 126 ~~~~~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~v 205 (373)
+..+.++||++|++++.+++....||.+|.+|+++|+++|+++|||||++|+.+++++|++.+|+|..+++....|+|++
T Consensus 38 ~~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~dv~~v 117 (242)
T 1ow3_A 38 PPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLP 117 (242)
T ss_dssp -CCTTCCSSSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHH
T ss_pred CCCCCCccCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHcCCCCCceeeeCCcHHHHHHHHHHHhcCCCCCcccccchHHH
Confidence 45567899999999998875556999999999999999999999999999999999999999999988777554699999
Q ss_pred HHHHHHHHHhCCCCCCchhhhHHHHhH-----HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHH
Q 017326 206 AALAKYYLASLPEPLTTFELYDEIKGA-----RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM 280 (373)
Q Consensus 206 a~lLK~fLr~LPePLl~~~ly~~~~~~-----~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~ 280 (373)
|++||.|||+||+||+|.++|+.|+++ .++++.++.++.+||+.|+.+|.||+.||++|+++++.|+||++|||+
T Consensus 118 a~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 197 (242)
T 1ow3_A 118 AVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAV 197 (242)
T ss_dssp HHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCcCCCCHHHhHH
Confidence 999999999999999999999999886 357889999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCChhHHHHHhhhhhccccccccCCCCCCccccccchhhhhhcccCCCCCCCCCCccchhHHHHHHHHhh
Q 017326 281 EMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQH 360 (373)
Q Consensus 281 vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~ve~li~~~~~~f~~d~~~~~~~~s~~p~~~~~~~~~~~~~vv~~LIe~~ 360 (373)
||||+|+|+++... .+. .+. ....++++||+||
T Consensus 198 vf~P~Ll~~~~~~~-~~~-~~~---------------------------------------------~~~~~v~~LI~~~ 230 (242)
T 1ow3_A 198 VFGPNLLWAKDAAI-TLK-AIN---------------------------------------------PINTFTKFLLDHQ 230 (242)
T ss_dssp HHHHHHCCCSSHHH-HHH-THH---------------------------------------------HHHHHHHHHHHTH
T ss_pred hhcchhCCCCCccc-cHH-HHH---------------------------------------------HHHHHHHHHHHHH
Confidence 99999999975321 111 000 1224899999999
Q ss_pred hhhcCCCCccc
Q 017326 361 NAIFTDANETV 371 (373)
Q Consensus 361 ~~IF~~~~~~~ 371 (373)
+.||++..+..
T Consensus 231 ~~iF~~~~~~~ 241 (242)
T 1ow3_A 231 GELFPSPDPSG 241 (242)
T ss_dssp HHHC-------
T ss_pred HHHcCCCCCCC
Confidence 99999887653
No 4
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=100.00 E-value=4.6e-44 Score=330.17 Aligned_cols=204 Identities=21% Similarity=0.397 Sum_probs=163.1
Q ss_pred CCCCCCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCC---CCh
Q 017326 126 GVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEG---VNP 202 (373)
Q Consensus 126 ~~~~~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~---~d~ 202 (373)
+..++++||++|+++++++ +..||.+|.+|+++|+++|+ +|||||++|+.+++++|++.+|+|...++... .|+
T Consensus 15 ~~~~~~vFG~~L~~~~~~~--~~~vP~iv~~~i~~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~dv 91 (229)
T 3iug_A 15 YFQGERVFGCDLGEHLLNS--GFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDI 91 (229)
T ss_dssp ---CCCSTTSCHHHHHHHH--CCSSCHHHHHHHHHHHHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTCH
T ss_pred CCCCCCeECcchHHHHHhc--CCCCCHHHHHHHHHHHHcCC-CCCCeecCCcHHHHHHHHHHHhcCCCCCccccccccch
Confidence 4457889999999999876 45899999999999999999 89999999999999999999999887665432 599
Q ss_pred hhhHHHHHHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChh
Q 017326 203 FDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDAR 276 (373)
Q Consensus 203 ~~va~lLK~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 276 (373)
|+||++||.|||+||+||+|.++|+.|+++ .+++..++.++.+||+.|+.+|.||+.||++|+++++.|+||++
T Consensus 92 h~va~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 171 (229)
T 3iug_A 92 HSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAK 171 (229)
T ss_dssp HHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHH
T ss_pred HHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCChH
Confidence 999999999999999999999999999887 46788999999999999999999999999999999999999999
Q ss_pred hHHHhhhhcccCCCCCChhHHHHHhhhhhccccccccCCCCCCccccccchhhhhhcccCCCCCCCCCCccchhHHHHHH
Q 017326 277 SLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCL 356 (373)
Q Consensus 277 nLA~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~ve~li~~~~~~f~~d~~~~~~~~s~~p~~~~~~~~~~~~~vv~~L 356 (373)
|||+||||+|+|+++.+....... ...++...+ ..++++|
T Consensus 172 NLAivf~P~Ll~~~~~~~~~~~~~---------------------------------------~~~~~~~~~-~~vve~L 211 (229)
T 3iug_A 172 NLAIVWAPNLLRSKQIESACFSGT---------------------------------------AAFMEVRIQ-SVVVEFI 211 (229)
T ss_dssp HHHHHHHHHHCCC----------------------------------------------------------C-HHHHHHH
T ss_pred HHHHHHhccccCCCcccccccchH---------------------------------------HHHHHHHHH-HHHHHHH
Confidence 999999999999986542111000 011122223 3499999
Q ss_pred HHhhhhhcCCCCcccC
Q 017326 357 MEQHNAIFTDANETVW 372 (373)
Q Consensus 357 Ie~~~~IF~~~~~~~~ 372 (373)
|+||+.||+++.+++.
T Consensus 212 I~~~~~iF~~~~~~~~ 227 (229)
T 3iug_A 212 LNHVDVLFSGRISMAM 227 (229)
T ss_dssp HHTHHHHTC-------
T ss_pred HHhHHHhCCCcHHhhc
Confidence 9999999999988775
No 5
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=6.2e-44 Score=323.25 Aligned_cols=164 Identities=23% Similarity=0.377 Sum_probs=149.3
Q ss_pred CCCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCC-CCCCC--CCCChhhh
Q 017326 129 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP-NASLP--EGVNPFDV 205 (373)
Q Consensus 129 ~~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~-~~~~~--~~~d~~~v 205 (373)
..++||++|+.+++++ +..||.+|.+|+++|+++|+++|||||++|+.+++++|++.+|+++ ..++. ...|+|++
T Consensus 5 ~~~vFG~~L~~~~~~~--~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~v 82 (202)
T 2osa_A 5 VKKVYSCDLTTLVKAH--TTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINII 82 (202)
T ss_dssp --CCTTSCHHHHHHHH--TCSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHH
T ss_pred CCCccCCChHHHHHHc--CCCCCcHHHHHHHHHHHhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHHHH
Confidence 4579999999999876 4589999999999999999999999999999999999999999853 34443 23699999
Q ss_pred HHHHHHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHH
Q 017326 206 AALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLA 279 (373)
Q Consensus 206 a~lLK~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA 279 (373)
|++||.|||+||+||+|.++|+.|+++ .++++.++.++.+||+.|+.+|.||+.||++|++|++.||||++|||
T Consensus 83 a~lLK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~NLa 162 (202)
T 2osa_A 83 TGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLG 162 (202)
T ss_dssp HHHHHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhccccCCCCCHHHHH
Confidence 999999999999999999999999886 35788999999999999999999999999999999999999999999
Q ss_pred HhhhhcccCCCCCCh
Q 017326 280 MEMAPVIMWQKERKP 294 (373)
Q Consensus 280 ~vf~P~Ll~~~~~~~ 294 (373)
+||||+|+++++.+.
T Consensus 163 ~vf~P~Ll~~~~~~~ 177 (202)
T 2osa_A 163 IVFGPTLMRSPELDA 177 (202)
T ss_dssp HHHHHHHCCCCCCCH
T ss_pred HHHccccCCCCCccH
Confidence 999999999997765
No 6
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=100.00 E-value=6.8e-44 Score=324.65 Aligned_cols=165 Identities=30% Similarity=0.500 Sum_probs=151.5
Q ss_pred CCCCCCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCC-CCChhh
Q 017326 126 GVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE-GVNPFD 204 (373)
Q Consensus 126 ~~~~~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~-~~d~~~ 204 (373)
+....++||++|++++.+ +..||.+|.+|+++|+++|+++|||||++|+.+++++|++.+|+|...++.. +.|+|+
T Consensus 6 ~~~~~~~FG~~L~~~~~~---~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~ 82 (209)
T 2ee4_A 6 SGWESNYFGMPLQDLVTA---EKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNA 82 (209)
T ss_dssp SSSCCSSSSSCHHHHSCS---SCCSCHHHHHHHHHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHH
T ss_pred CCCCCCeeCCcHHHHHhc---CCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccCCCCHHH
Confidence 445678999999999864 3589999999999999999999999999999999999999999988766432 479999
Q ss_pred hHHHHHHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhH
Q 017326 205 VAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSL 278 (373)
Q Consensus 205 va~lLK~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nL 278 (373)
+|++||.|||+||+||+|.++|+.|+++ .+++..++.++.+||+.|+.+|+||+.||++|+++++.||||++||
T Consensus 83 va~lLK~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NL 162 (209)
T 2ee4_A 83 VAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNL 162 (209)
T ss_dssp HHHHHHHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHHHTTTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHH
Confidence 9999999999999999999999999886 3578899999999999999999999999999999999999999999
Q ss_pred HHhhhhcccCCCCCC
Q 017326 279 AMEMAPVIMWQKERK 293 (373)
Q Consensus 279 A~vf~P~Ll~~~~~~ 293 (373)
|+||||+|+|++..+
T Consensus 163 aivf~P~L~~~~~~~ 177 (209)
T 2ee4_A 163 SICFWPTLMRPDFEN 177 (209)
T ss_dssp HHHHHHHHSCCCCCS
T ss_pred HHHhcccccCCCCcc
Confidence 999999999987654
No 7
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.3e-43 Score=319.20 Aligned_cols=162 Identities=22% Similarity=0.382 Sum_probs=150.1
Q ss_pred CCCCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHH
Q 017326 128 ASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAA 207 (373)
Q Consensus 128 ~~~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~ 207 (373)
.++++||++|+++++++ .||.+|.+|+++|+++|+++|||||++|+.+++++|++.+|+|...++. ..|+|++|+
T Consensus 8 ~~~~vFG~~L~~~~~~~----~vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~-~~d~~~va~ 82 (201)
T 3msx_B 8 MPGQLFGISLPNICEND----NLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHLD-CESIFVIAS 82 (201)
T ss_dssp --CCCTTSCHHHHSGGG----CCCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCCCCTT-SSCHHHHHH
T ss_pred CCCCeeCCcHHHHhcCC----CCCHHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHhccCCCCCCC-cccHHHHHH
Confidence 45789999999998753 6999999999999999999999999999999999999999999877664 579999999
Q ss_pred HHHHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHh
Q 017326 208 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME 281 (373)
Q Consensus 208 lLK~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~v 281 (373)
+||.|||+||+||+|.++|+.|+++ .+++..++.++.+||+.|+.+|+||+.||++|++|++.|+||++|||+|
T Consensus 83 lLK~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~v 162 (201)
T 3msx_B 83 VLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVC 162 (201)
T ss_dssp HHHHHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCChhhhhhh
Confidence 9999999999999999999999876 4578899999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCCh
Q 017326 282 MAPVIMWQKERKP 294 (373)
Q Consensus 282 f~P~Ll~~~~~~~ 294 (373)
|||+|+|++....
T Consensus 163 f~P~ll~~~~~~~ 175 (201)
T 3msx_B 163 VAPSILWPPASSS 175 (201)
T ss_dssp HHHHHCCCCTTSC
T ss_pred hhccccCCCCCCC
Confidence 9999999997653
No 8
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=100.00 E-value=8.8e-44 Score=325.51 Aligned_cols=163 Identities=19% Similarity=0.346 Sum_probs=145.0
Q ss_pred CCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCC-CCCCCCCChhhhHHH
Q 017326 130 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-ASLPEGVNPFDVAAL 208 (373)
Q Consensus 130 ~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~-~~~~~~~d~~~va~l 208 (373)
..+||++|++++++...+..||.+|.+|+++|+++|+++|||||++|+.++ ++|++.+|+|.. +++ +.+|+|+||++
T Consensus 5 ~~~fGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~~~-~~~dv~~va~l 82 (216)
T 1pbw_A 5 VEQQALTLPDLAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNL-AELRQLLDCDTPSVDL-EMIDVHVLADA 82 (216)
T ss_dssp -------CCCHHHHCCTTSCSCHHHHHHHHHHHHHHTTCTTTTSSCCSCCT-THHHHHSCSSSSCCCG-GGBCHHHHHHH
T ss_pred cccCCCcHHHHHhccCCCCCcCHHHHHHHHHHHHcCCCCCCeeeCCChHHH-HHHHHHHHcCCCCCCc-cccCHHHHHHH
Confidence 357999999999876566899999999999999999999999999999999 999999999853 444 45799999999
Q ss_pred HHHHHHhCCCCCCchhhhHHHHhHH-------HHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHH
Q 017326 209 AKYYLASLPEPLTTFELYDEIKGAR-------SSIHAMRNTLK--KLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLA 279 (373)
Q Consensus 209 LK~fLr~LPePLl~~~ly~~~~~~~-------~~~~~l~~ll~--~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA 279 (373)
||.|||+||+||+|+++|+.|+++. +++..++.++. +||+.|+.+|+||+.||++|++|++.||||++|||
T Consensus 83 LK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~l~~ll~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLA 162 (216)
T 1pbw_A 83 FKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLS 162 (216)
T ss_dssp HHHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHH
Confidence 9999999999999999999998873 57889999999 99999999999999999999999999999999999
Q ss_pred HhhhhcccCCCCCCh
Q 017326 280 MEMAPVIMWQKERKP 294 (373)
Q Consensus 280 ~vf~P~Ll~~~~~~~ 294 (373)
+||||+|+|++..+.
T Consensus 163 ivf~P~Ll~~~~~~~ 177 (216)
T 1pbw_A 163 EIFSPMLFRFSAASS 177 (216)
T ss_dssp HHHHHHHHTCSSCCH
T ss_pred HHHhhhcCCCCCCch
Confidence 999999999998764
No 9
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=100.00 E-value=6e-43 Score=325.96 Aligned_cols=166 Identities=27% Similarity=0.512 Sum_probs=152.0
Q ss_pred CCCCCCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCC-CCChhh
Q 017326 126 GVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE-GVNPFD 204 (373)
Q Consensus 126 ~~~~~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~-~~d~~~ 204 (373)
.....++||+||+.++.. +..||.+|.+|+++|+++|+++|||||++|+.+++++|++.+|+|...++.. ++|+|+
T Consensus 47 ~~~~~~vFGv~L~~~~~~---~~~vP~iv~~~i~~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dvh~ 123 (246)
T 3fk2_A 47 ATWESNYFGVPLTTVVTP---EKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNT 123 (246)
T ss_dssp --CCCSSTTSCGGGGCCS---SSCSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCHHH
T ss_pred cccCCCeeCCCHHHHhcC---CCCCChHHHHHHHHHHHhCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCcccccCcHHH
Confidence 445678999999999864 4689999999999999999999999999999999999999999998776543 469999
Q ss_pred hHHHHHHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhH
Q 017326 205 VAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSL 278 (373)
Q Consensus 205 va~lLK~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nL 278 (373)
||++||.|||+||+||+|+++|+.|+++ .+++..++.++.+||+.|+.+|.||+.||++|+++++.|+||+.||
T Consensus 124 va~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NL 203 (246)
T 3fk2_A 124 VAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENL 203 (246)
T ss_dssp HHHHHHHHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHH
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCchHHh
Confidence 9999999999999999999999999987 3578899999999999999999999999999999999999999999
Q ss_pred HHhhhhcccCCCCCCh
Q 017326 279 AMEMAPVIMWQKERKP 294 (373)
Q Consensus 279 A~vf~P~Ll~~~~~~~ 294 (373)
|+||||+|+|++..+.
T Consensus 204 Aivf~P~Llrp~~~~~ 219 (246)
T 3fk2_A 204 SICFWPTLMRPDFSTM 219 (246)
T ss_dssp HHHHHHHHHCCCSSSS
T ss_pred HHHhcccccCCCCccH
Confidence 9999999999876554
No 10
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=100.00 E-value=5e-43 Score=323.63 Aligned_cols=196 Identities=21% Similarity=0.317 Sum_probs=149.7
Q ss_pred CCCcccCchhhHHhhhcC-CCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHH-HHcCCC--CCCCC--CCCCh
Q 017326 129 STDVFGVPIEVTVQRQQY-GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVS-MYNQDP--NASLP--EGVNP 202 (373)
Q Consensus 129 ~~~vFG~~L~~l~~~~~~-~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~-~~~~~~--~~~~~--~~~d~ 202 (373)
+.++||+||...++++.. ...+|.+|.+|+++|+++|+++|||||++|+.+++++|++ .+|.+. .+++. ...|+
T Consensus 15 ~~pvfgvpl~~~~~~~~~l~~~~p~iv~~ci~~le~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dv 94 (231)
T 1f7c_A 15 REPVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEI 94 (231)
T ss_dssp ----------------CCSSHHHHHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCH
T ss_pred CCCccCCcchhccccccccCCcCccHHHHHHHHHHHhCCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccCccccccccH
Confidence 456999999988765432 3468999999999999999999999999999999999987 578764 34443 24799
Q ss_pred hhhHHHHHHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChh
Q 017326 203 FDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDAR 276 (373)
Q Consensus 203 ~~va~lLK~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 276 (373)
|+||++||.|||+||+||+|+++|+.|+++ .+++..++.++.+||+.|+.+|.||+.||++|++|++.||||++
T Consensus 95 h~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~r~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 174 (231)
T 1f7c_A 95 KTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVA 174 (231)
T ss_dssp HHHHHHHHHHHHTSSSCTTCHHHHHHHHHHHTCSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcCCCCCCCHH
Confidence 999999999999999999999999999887 35789999999999999999999999999999999999999999
Q ss_pred hHHHhhhhcccCCCCCChhHHHHHhhhhhccccccccCCCCCCccccccchhhhhhcccCCCCCCCCCCccchhHHHHHH
Q 017326 277 SLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCL 356 (373)
Q Consensus 277 nLA~vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~ve~li~~~~~~f~~d~~~~~~~~s~~p~~~~~~~~~~~~~vv~~L 356 (373)
|||+||||+|++++..+...+ +++..+ ..+|++|
T Consensus 175 NLAivf~P~Ll~~~~~~~~~~---------------------------------------------~~~~~~-~~vve~L 208 (231)
T 1f7c_A 175 NLGVVFGPTLLRPQEETVAAI---------------------------------------------MDIKFQ-NIVIEIL 208 (231)
T ss_dssp HHHHHHHHHHSCC---CCSGG---------------------------------------------GGHHHH-HHHHHHH
T ss_pred HHHHHhccccCCCCcccHHHH---------------------------------------------HHHHHH-HHHHHHH
Confidence 999999999999986542110 011122 2489999
Q ss_pred HHhhhhhcCCCCcc
Q 017326 357 MEQHNAIFTDANET 370 (373)
Q Consensus 357 Ie~~~~IF~~~~~~ 370 (373)
|+||+.||+++++.
T Consensus 209 I~~~~~iF~~~~~~ 222 (231)
T 1f7c_A 209 IENHEKIFNTVPET 222 (231)
T ss_dssp HHTHHHHHHSCCC-
T ss_pred HHHHHHhCCCCCCC
Confidence 99999999998875
No 11
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.2e-41 Score=310.92 Aligned_cols=168 Identities=30% Similarity=0.407 Sum_probs=152.4
Q ss_pred cCCCCCCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhh
Q 017326 125 KGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFD 204 (373)
Q Consensus 125 ~~~~~~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~ 204 (373)
.+...+++||+||+++++++ +..||.+|.+|+++|+++|+++|||||++|+.+++++|++.+|+++.....+..|+|+
T Consensus 13 ~~~~~~~vFGv~L~~~~~~~--~~~vP~~v~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~ 90 (228)
T 3kuq_A 13 NLYFQGSVFGVPLTVNVQRT--GQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVNYEGQSAYD 90 (228)
T ss_dssp -CBCTTSSTTCCHHHHHHHH--SSSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCCCCTTCCHHH
T ss_pred CCCCCCCEECCchHHHHHHc--CCCCCHHHHHHHHHHHHhCCCcCCeeecCCCHHHHHHHHHHHhcCCCcCCcccCCHHH
Confidence 44567889999999999876 4689999999999999999999999999999999999999998765544445689999
Q ss_pred hHHHHHHHHHhCCCCCCchhhhHHHHhHH------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhH
Q 017326 205 VAALAKYYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSL 278 (373)
Q Consensus 205 va~lLK~fLr~LPePLl~~~ly~~~~~~~------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nL 278 (373)
||++||.|||+||+||+|.++|+.|+++. +++..++.++.+||+.|+.+|.||+.||++|+++++.|+||+.||
T Consensus 91 va~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL 170 (228)
T 3kuq_A 91 VADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNL 170 (228)
T ss_dssp HHHHHHHHHHHSSSCTTCSSHHHHHHHHHHHSCGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCchhHh
Confidence 99999999999999999999999999873 478899999999999999999999999999999999999999999
Q ss_pred HHhhhhcccCCCCCCh
Q 017326 279 AMEMAPVIMWQKERKP 294 (373)
Q Consensus 279 A~vf~P~Ll~~~~~~~ 294 (373)
|+||||+||+++..+.
T Consensus 171 Aivf~P~Ll~~~~~~~ 186 (228)
T 3kuq_A 171 AVCLAPSLFHLNTLKR 186 (228)
T ss_dssp HHHHHHHHHTCCCC--
T ss_pred HHHHhhhhcCCCCCCC
Confidence 9999999999986643
No 12
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=100.00 E-value=7.1e-41 Score=302.95 Aligned_cols=156 Identities=26% Similarity=0.349 Sum_probs=141.5
Q ss_pred CchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCC-CChhhhHHHHHHHH
Q 017326 135 VPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEG-VNPFDVAALAKYYL 213 (373)
Q Consensus 135 ~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~-~d~~~va~lLK~fL 213 (373)
.+|++++.+ ++..||.+|.+|+++|+++|+++|||||++|+.+++++|++.+|+|........ .|+|++|++||.||
T Consensus 4 g~L~~~~~~--~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~fl 81 (201)
T 2ovj_A 4 GMLADFVSQ--TSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFL 81 (201)
T ss_dssp CCGGGGCCS--SSSCCCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHHHH
T ss_pred CcHHHHhcc--cCCCCChHHHHHHHHHHHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHH
Confidence 457777765 367999999999999999999999999999999999999999999976543333 49999999999999
Q ss_pred HhCCCCCCchhhhHHHHhHH------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhccc
Q 017326 214 ASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIM 287 (373)
Q Consensus 214 r~LPePLl~~~ly~~~~~~~------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~Ll 287 (373)
|+||+||+|.++|+.|+++. +++..++.++.+||+.|+.+|.||+.||++|+++ +.||||++|||+||||+|+
T Consensus 82 reLpePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~~~NLa~vf~P~ll 160 (201)
T 2ovj_A 82 RNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLAKVFGPTIV 160 (201)
T ss_dssp HTSSSCTTCTTTHHHHHHHHHCSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHHHHHHHHHT
T ss_pred HhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcc-cccCCCHHHHHHHhhhhhc
Confidence 99999999999999999873 5788999999999999999999999999999996 6899999999999999999
Q ss_pred CCCCCC
Q 017326 288 WQKERK 293 (373)
Q Consensus 288 ~~~~~~ 293 (373)
+++..+
T Consensus 161 ~~~~~~ 166 (201)
T 2ovj_A 161 AHAVPN 166 (201)
T ss_dssp CCSSSS
T ss_pred CCCCCC
Confidence 987654
No 13
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.9e-41 Score=317.86 Aligned_cols=164 Identities=24% Similarity=0.326 Sum_probs=136.0
Q ss_pred CCCCCcccCchhhHHhhhc-CCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhh
Q 017326 127 VASTDVFGVPIEVTVQRQQ-YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDV 205 (373)
Q Consensus 127 ~~~~~vFG~~L~~l~~~~~-~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~v 205 (373)
..+.++||+||++++++.. ..+.||.+|.+|+.+|++ |+++|||||++|+.+++++|++.+|+|.... ...|+|+|
T Consensus 59 ~~~~~vFGv~L~~l~~~~~~~~~~iP~~l~~~~~~le~-gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~--~~~~~~~v 135 (271)
T 3eap_A 59 EIGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLED-HIHTEGLFRKSGSVIRLKALKNKVDHGEGCL--SSAPPCDI 135 (271)
T ss_dssp --CCSSTTSCGGGSCEEEETTTEEEEHHHHHHHHHHGG-GTTC--------CHHHHHHHHHHHHHC-------CCCHHHH
T ss_pred CCCCCeeCCcHHHHHhhccCCCCCcChHHHHHHHHHHh-CCCCCCeeeeCCCHHHHHHHHHHHHcCCCCc--ccccHHHH
Confidence 3467899999999876432 245799999999999985 8999999999999999999999999987653 35799999
Q ss_pred HHHHHHHHHhCCCCCCchhhhHHHHhH-----HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHH
Q 017326 206 AALAKYYLASLPEPLTTFELYDEIKGA-----RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM 280 (373)
Q Consensus 206 a~lLK~fLr~LPePLl~~~ly~~~~~~-----~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~ 280 (373)
|++||.|||+||+||+|+++|+.|+++ .++...++.++..||+.|+.+|.||+.||++|+++++.|+||+.|||+
T Consensus 136 a~lLK~fLReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 215 (271)
T 3eap_A 136 AGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAV 215 (271)
T ss_dssp HHHHHHHHHHSSSCSSCGGGHHHHHHHTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred HHHHHHHHHhCCcccCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHH
Confidence 999999999999999999999999987 346778888999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCC
Q 017326 281 EMAPVIMWQKERK 293 (373)
Q Consensus 281 vf~P~Ll~~~~~~ 293 (373)
||||+|+++++..
T Consensus 216 vf~P~Ll~~~~~~ 228 (271)
T 3eap_A 216 IFAPNLLQTSEGH 228 (271)
T ss_dssp HHHHHHHTCCCCC
T ss_pred HHHhHhccCCCCc
Confidence 9999999998643
No 14
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=100.00 E-value=3.2e-41 Score=341.20 Aligned_cols=194 Identities=20% Similarity=0.320 Sum_probs=167.0
Q ss_pred ccchhhHHHHHhhhhccchHhhHHHhhcCCCCCCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCC
Q 017326 98 GKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGD 177 (373)
Q Consensus 98 ~~~~~~e~~~~~~~k~~~~~~~~~~~~~~~~~~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~ 177 (373)
++..|.+|...+|++|.......+.. ......++||++|+++++++ +..||.+|.+|+++|+++|+++|||||++|+
T Consensus 236 qg~~C~~C~~~~Hk~C~~~vp~~C~~-~~~~~~~vFG~~L~~~~~~~--~~~vP~iv~~~i~~le~~gl~~eGIfR~sG~ 312 (463)
T 3cxl_A 236 QGVKCADCGLNVHKQCSKMVPNDCKP-DLKHVKKVYSCDLTTLVKAH--TTKRPMVVDMCIREIESRGLNSEGLYRVSGF 312 (463)
T ss_dssp CEEEETTTCCEECHHHHTTSCSBCCG-GGGGCCCCTTSCHHHHHHHH--TCSSCHHHHHHHHHHHHHCSCSTTTTTSCCC
T ss_pred cCeeccccCccccccccccccccccc-cccccccccccccchhhhcc--CCCCCeeHHHHHHHHHhcCCCCCceeEecCC
Confidence 46888888888888776443322211 11224689999999999876 5689999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCC-CCCCC--CCCChhhhHHHHHHHHHhCCCCCCchhhhHHHHhH------HHHHHHHHHHHHhccH
Q 017326 178 KKVIQHLVSMYNQDP-NASLP--EGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSN 248 (373)
Q Consensus 178 ~~~i~~l~~~~~~~~-~~~~~--~~~d~~~va~lLK~fLr~LPePLl~~~ly~~~~~~------~~~~~~l~~ll~~LP~ 248 (373)
.+++++|++.+|++. ..++. ...|+|+||++||.|||+||+||+|+++|+.|+++ .++++.++.++.+||+
T Consensus 313 ~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~lLK~flReLPePLi~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~ 392 (463)
T 3cxl_A 313 SDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPP 392 (463)
T ss_dssp HHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHHHHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHhcCCcCCcccccCCCcchhhhHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCH
Confidence 999999999999854 33432 24699999999999999999999999999999987 3578899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhcccCCCCCCh
Q 017326 249 VNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKP 294 (373)
Q Consensus 249 ~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~Ll~~~~~~~ 294 (373)
.|+.+|.+|+.||++|+++++.|+||+.|||+||||+|+++++.+.
T Consensus 393 ~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivf~P~Ll~~~~~~~ 438 (463)
T 3cxl_A 393 AHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDA 438 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCCCSCT
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHhhccccCCCCccH
Confidence 9999999999999999999999999999999999999999987653
No 15
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}
Probab=100.00 E-value=1.1e-39 Score=297.38 Aligned_cols=156 Identities=19% Similarity=0.187 Sum_probs=126.4
Q ss_pred CCCcccCchhhHHhhhcCCCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHH
Q 017326 129 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAAL 208 (373)
Q Consensus 129 ~~~vFG~~L~~l~~~~~~~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~l 208 (373)
..++||++|++++++......||.+|.+|+++|+++|+++|||||++|+. |++ .+...++ +..|+|+||++
T Consensus 19 ~~~vFGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~Gl~~eGIfR~sG~~-----lr~---~~~~~dl-~~~dvh~va~l 89 (214)
T 2xs6_A 19 YFQSMGLTLPDLPEQFSPPDVAPPLLVKLVEAIERTGLDSESHYRPELPA-----PRT---DWSLSDV-DQWDTAALADG 89 (214)
T ss_dssp ------CCCCCHHHHCCTTCCSCHHHHHHHHHHHHHCTTCSGGGCCSCCC-----CCC---CCCCTTG-GGCCHHHHHHH
T ss_pred CCcccCcCHHHHHHhhCCCCCCCHHHHHHHHHHHHhCCCCCCCeeeCHHH-----HHh---ccccCCC-ccCCHHHHHHH
Confidence 45799999999998544457899999999999999999999999999998 333 2223333 35899999999
Q ss_pred HHHHHHhCCCCCCchhhhHHHHhHHH---HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhc
Q 017326 209 AKYYLASLPEPLTTFELYDEIKGARS---SIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPV 285 (373)
Q Consensus 209 LK~fLr~LPePLl~~~ly~~~~~~~~---~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~ 285 (373)
||.|||+||+||+|.++|+.|+++.. ..+.+..++.+||+.|+.+|+||+.||++|+++++.||||+.|||+||||+
T Consensus 90 LK~flReLPePLi~~~ly~~~i~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~ 169 (214)
T 2xs6_A 90 IKSFLLALPAPLVTPEASAEARRALREAAGPVGPALEPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATFGPL 169 (214)
T ss_dssp HHHHHHHSSSCSSCHHHHHHHHHHHHCC--CCGGGGSTTTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHhhh
Confidence 99999999999999999999998843 112233789999999999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 017326 286 IMWQKERK 293 (373)
Q Consensus 286 Ll~~~~~~ 293 (373)
|+|+++.+
T Consensus 170 Ll~~~~~~ 177 (214)
T 2xs6_A 170 LLRAPPPP 177 (214)
T ss_dssp HHC-----
T ss_pred hcCCcccc
Confidence 99998754
No 16
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=100.00 E-value=4.8e-36 Score=294.34 Aligned_cols=163 Identities=19% Similarity=0.304 Sum_probs=149.0
Q ss_pred CCCcccCchhhHHhhhc-------------------------------------CCCCCCHHHHHHHHHHHhcCCCCcCe
Q 017326 129 STDVFGVPIEVTVQRQQ-------------------------------------YGKPVPHILVKCADYLVLSGLNSQFL 171 (373)
Q Consensus 129 ~~~vFG~~L~~l~~~~~-------------------------------------~~~~vP~iv~~~i~~i~~~gl~~eGI 171 (373)
.+++||++|+.++.... .+..||.+|.+|++||+++|+++|||
T Consensus 141 ~~s~FG~sl~~l~~~~~pir~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~iP~~v~~~i~~l~~~Gl~~eGI 220 (366)
T 3qis_A 141 LPSCFGTSLEALCRMKRPIREVPVTKLIDLEEDSFLEKEKSLLQMVPLDEGASERPLQVPKEIWLLVDHLFKYACHQEDL 220 (366)
T ss_dssp CCCSTTSCHHHHHHCCSCTTC---------------------------------CCCSSCHHHHHHHHHHHHHCTTCTTT
T ss_pred CCccccCcHHHHHHhccchhhcChhhhhhccccchhhhcccccccccccccccCCCCCcChHHHHHHHHHHhcCCCCCCe
Confidence 56799999999886531 12489999999999999999999999
Q ss_pred EeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHHHHhCCCCCCchhhhHHHHhHHHHHHHHHHHHHhccHHHH
Q 017326 172 FKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNF 251 (373)
Q Consensus 172 FR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~LPePLl~~~ly~~~~~~~~~~~~l~~ll~~LP~~n~ 251 (373)
||++|+.+++++|++.+|.|....+. .|+|++|++||.|||+||+||+|.++|+.|+++....+.++.++.+||+.|+
T Consensus 221 FR~~G~~~~v~~L~~~~d~~~~~~~~--~dvh~va~lLK~fLReLPePLi~~~ly~~~~~~~~~~~~~~~ll~~LP~~n~ 298 (366)
T 3qis_A 221 FQTPGMQEELQQIIDCLDTSIPETIP--GSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQLPRCHR 298 (366)
T ss_dssp TTSCCCHHHHHHHHHHHHHCCCSSCC--SCHHHHHHHHHHHHHHCSSCSSCHHHHHHHHHHTTCHHHHHHHHHTSCHHHH
T ss_pred EeCCCCHHHHHHHHHHHcCCCCCccc--cCHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHhhhHHHHHHHHHHCCHHHH
Confidence 99999999999999999998876653 4999999999999999999999999999999997767789999999999999
Q ss_pred HHHHHHHHHHHHHHhccCcCCCChhhHHHhhhhcccCCCCCC
Q 017326 252 MTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERK 293 (373)
Q Consensus 252 ~~L~~L~~~L~~V~~~s~~NkM~~~nLA~vf~P~Ll~~~~~~ 293 (373)
.+|.||+.||++|++|++.|+||++|||+||||+|||+++.+
T Consensus 299 ~~L~~L~~~L~~V~~~s~~NkM~~~NLA~vf~P~Llr~~~~~ 340 (366)
T 3qis_A 299 NVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPPNL 340 (366)
T ss_dssp HHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHSCCCC--
T ss_pred HHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhcccCCCcc
Confidence 999999999999999999999999999999999999999754
No 17
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=98.53 E-value=1.4e-08 Score=94.34 Aligned_cols=97 Identities=11% Similarity=-0.020 Sum_probs=76.1
Q ss_pred CchHHHh------hhccccccchhhhhhhhhhhHhhHHHHhhHHHhh-hccchhHHHHHHHhcCCccccccchhhhhHhh
Q 017326 6 SPPWQEK------ASEFFSSSGSKLREAGQSVGEVAKDAKGNAADVA-ERVGSAVKSRWALLQEPSTKHAVQERLISAAA 78 (373)
Q Consensus 6 ~~~~~~~------~~~~~~~~~~~~~~~~~~y~~~~r~~kknlk~ly-vhp~~~~Ks~~~~~q~~~~~~~~~~~~iS~kf 78 (373)
++.|.++ .+||-++.--.++-..++|..+||+++|||+++| +||++|+|..|..+. +.+.+.++
T Consensus 52 ~~~~~~~y~lV~d~T~~~~~n~p~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~---------~~~~~~k~ 122 (256)
T 3pg7_A 52 KPYYAKPYEIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHE---------RLLTGLKG 122 (256)
T ss_dssp TTTTTSCEEEEEECTTCCGGGCCCHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTH---------HHHTTTTT
T ss_pred HHhcCCCeEEEEECCCCCcccCCcHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHh---------cccccccc
Confidence 4556555 3454444444556677889999999999999999 999999997766554 16777799
Q ss_pred hhcccccccccccchhhhcccchhhHHHHHhhh
Q 017326 79 ITGMFLRRGFSETKDKVAVGKIKVEEAAKKTAQ 111 (373)
Q Consensus 79 ~tkify~~~lselke~v~~~~~~~~e~~~~~~~ 111 (373)
.+|+.|++++++|.++++..++.+++.......
T Consensus 123 ~~Ki~fv~sl~eL~~~i~~~~L~LP~~t~~~~~ 155 (256)
T 3pg7_A 123 SKRLVFIDCPGKLAEHIEHEQQKLPAATLALEE 155 (256)
T ss_dssp CTTEEEESSTTGGGGTSCGGGCCCCHHHHHTTS
T ss_pred CCcEEEECCHHHHHhhcCHHHcCCChHHHhhcc
Confidence 999999999999999999999999766554433
No 18
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=97.48 E-value=2.3e-05 Score=73.78 Aligned_cols=89 Identities=11% Similarity=-0.045 Sum_probs=59.6
Q ss_pred CchHHHh------hhccccccchhhhhhhhhhhHhhHHHHhhHHHhh-hccchhHHHHH-HHhcCCccccccchhhhhHh
Q 017326 6 SPPWQEK------ASEFFSSSGSKLREAGQSVGEVAKDAKGNAADVA-ERVGSAVKSRW-ALLQEPSTKHAVQERLISAA 77 (373)
Q Consensus 6 ~~~~~~~------~~~~~~~~~~~~~~~~~~y~~~~r~~kknlk~ly-vhp~~~~Ks~~-~~~q~~~~~~~~~~~~iS~k 77 (373)
+|-|..+ .++|-+..--.++-..++|..+|++++||++++| +||++|.|..+ ..++ .+.+.+
T Consensus 71 ~~~~~~~y~lV~D~T~~~~~n~p~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~----------~~~~~k 140 (290)
T 3peg_A 71 KPYYAKPYEIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHER----------LLTGLK 140 (290)
T ss_dssp TTTTTSCEEEEEECTTCCGGGCCCHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTT----------TGGGGT
T ss_pred HHhcCCCeEEEEEcCCCCccCCChHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHh----------hhhhhh
Confidence 4566655 3455555455566778889999999999999999 99999999854 4445 788889
Q ss_pred hhhcccccccccccchhhhcccchhhH
Q 017326 78 AITGMFLRRGFSETKDKVAVGKIKVEE 104 (373)
Q Consensus 78 f~tkify~~~lselke~v~~~~~~~~e 104 (373)
+.+|+.|.+...++.+++...++..++
T Consensus 141 ~~~k~v~~~~~~~L~~~i~~~~~~lp~ 167 (290)
T 3peg_A 141 GSKRLVFIDCPGKLAEHIEHEQQKLPA 167 (290)
T ss_dssp TCTTEEEESSSCC--------------
T ss_pred cCceEEEcCCHHHHHhhCCHHHhcCcc
Confidence 999999999999888888877777755
No 19
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=76.97 E-value=0.58 Score=42.22 Aligned_cols=57 Identities=0% Similarity=0.011 Sum_probs=43.0
Q ss_pred hhhHhhHHHHhhHHHhh-hccchhHHHHHHHhcCCccccccchhhhhHhhhhccccccc--ccccchhhh
Q 017326 30 SVGEVAKDAKGNAADVA-ERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRG--FSETKDKVA 96 (373)
Q Consensus 30 ~y~~~~r~~kknlk~ly-vhp~~~~Ks~~~~~q~~~~~~~~~~~~iS~kf~tkify~~~--lselke~v~ 96 (373)
....+...|-..|+++| +++.++....|.+++ ++++++...|+.+... .+++.+++.
T Consensus 163 ~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vk----------pfl~~~t~~Ki~~~~~~~~~~L~~~i~ 222 (262)
T 1r5l_A 163 IAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIK----------PFLTEKIKERIHMHGNNYKQSLLQHFP 222 (262)
T ss_dssp HHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHG----------GGSCHHHHTTEEECCSSCHHHHHHHST
T ss_pred HHHHHHhhCChhhceEEEEeCCHHHHHHHHHHH----------HhcCHHHHhheEEeCCCcHHHHHHHhh
Confidence 34445555667889999 999999999999999 9999999999886533 233444443
No 20
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=69.69 E-value=1.3 Score=41.42 Aligned_cols=49 Identities=4% Similarity=0.078 Sum_probs=40.9
Q ss_pred hhhhhhHhhHHHHhhHHHhh-hccchhHHHHHHHhcCCccccccchhhhhHhhhhccccc
Q 017326 27 AGQSVGEVAKDAKGNAADVA-ERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLR 85 (373)
Q Consensus 27 ~~~~y~~~~r~~kknlk~ly-vhp~~~~Ks~~~~~q~~~~~~~~~~~~iS~kf~tkify~ 85 (373)
+.+....+...|-.+|+.++ +++.++....|.+++ ++++++...|+++.
T Consensus 219 ~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivk----------pfl~~kt~~KI~~~ 268 (316)
T 3hx3_A 219 LRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVK----------PFLKSKLLERVFVH 268 (316)
T ss_dssp HHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHG----------GGCCHHHHTTEEEE
T ss_pred HHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHH----------HhCCHHhhhheEEe
Confidence 34445555666778999999 999999999999999 99999999998764
No 21
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=67.48 E-value=2 Score=39.58 Aligned_cols=53 Identities=6% Similarity=0.119 Sum_probs=41.3
Q ss_pred hhHHHHhhHHHhh-hccchhHHHHHHHhcCCccccccchhhhhHhhhhccccccc--ccccchhhh
Q 017326 34 VAKDAKGNAADVA-ERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRG--FSETKDKVA 96 (373)
Q Consensus 34 ~~r~~kknlk~ly-vhp~~~~Ks~~~~~q~~~~~~~~~~~~iS~kf~tkify~~~--lselke~v~ 96 (373)
+-..|=..|++++ +++.++...+|.+++ ++++++...|+.+... .++|.+++.
T Consensus 198 ~q~~YPerl~~i~iiN~P~~f~~~~~iik----------pfl~~~t~~KI~~~~~~~~~~L~~~i~ 253 (296)
T 1aua_A 198 SQNYYPERMGKFYIINAPFGFSTAFRLFK----------PFLDPVTVSKIFILGSSYQKELLKQIP 253 (296)
T ss_dssp HHHHSTTCEEEEEEESCCHHHHHHHHHHG----------GGSCHHHHTTEEECCSCCHHHHTTTSC
T ss_pred HHHhHHHhhCeEEEECchHHHHHHHHHHH----------hhcCHhhcceEEEeCcccHHHHHhhCC
Confidence 3344556788999 999999999999999 9999999999987654 334555554
No 22
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=56.69 E-value=3.7 Score=39.62 Aligned_cols=59 Identities=5% Similarity=0.074 Sum_probs=45.9
Q ss_pred hhhhhHhhHHHHhhHHHhh-hccchhHHHHHHHhcCCccccccchhhhhHhhhhccccccc--ccccchhhh
Q 017326 28 GQSVGEVAKDAKGNAADVA-ERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRG--FSETKDKVA 96 (373)
Q Consensus 28 ~~~y~~~~r~~kknlk~ly-vhp~~~~Ks~~~~~q~~~~~~~~~~~~iS~kf~tkify~~~--lselke~v~ 96 (373)
.+....+...|-..|++++ +++.++...+|.+++ ++++++...|+.+... .++|.+++.
T Consensus 172 k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ik----------pfl~~~t~~KI~~~~~~~~~~L~~~I~ 233 (403)
T 1olm_A 172 GEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIK----------PFLSEDTRKKIMVLGANWKEVLLKHIS 233 (403)
T ss_dssp HHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHG----------GGSCHHHHHTEEECCTTHHHHHTTTSC
T ss_pred HHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHH----------hhcCHhhhceEEEEChhHHHHHHhhcC
Confidence 4445556666778899999 999999999999999 9999999999987643 334555544
No 23
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=48.95 E-value=4.1 Score=38.18 Aligned_cols=53 Identities=4% Similarity=0.095 Sum_probs=40.3
Q ss_pred hhHHHHhhHHHhh-hccchhHHHHHHHhcCCccccccchhhhhHhhhhccccccc--ccccchhhh
Q 017326 34 VAKDAKGNAADVA-ERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRG--FSETKDKVA 96 (373)
Q Consensus 34 ~~r~~kknlk~ly-vhp~~~~Ks~~~~~q~~~~~~~~~~~~iS~kf~tkify~~~--lselke~v~ 96 (373)
+-..|=..|+.++ +++.++....|.+++ ++++++...|+.+... ..+|.+++.
T Consensus 213 lq~~YPerl~~i~iiN~P~~f~~~~~~ik----------pfl~~~t~~KI~~~~~~~~~~L~~~i~ 268 (320)
T 3q8g_A 213 SQNYYPERMGKFYIIHSPFGFSTMFKMVK----------PFLDPVTVSKIFILGSSYKKELLKQIP 268 (320)
T ss_dssp HHHHSTTCEEEEEEESCCTTHHHHHTTTG----------GGSCHHHHHTEEECCTTHHHHHHHHSC
T ss_pred HHhhCchhhceEEEECCCHHHHHHHHHHH----------HhCCHHHhhhEEEeCCCcHHHHHhhCC
Confidence 3344556788899 999999999999999 9999999999976643 234444443
No 24
>4h5l_A Nucleoprotein; nucleocapsid protein, N protein, RNA binding, RNP, viral protein; 2.75A {Toscana virus}
Probab=36.65 E-value=1e+02 Score=27.67 Aligned_cols=100 Identities=12% Similarity=0.083 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHHHHhCCCCCCchhhhHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Q 017326 177 DKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEY 256 (373)
Q Consensus 177 ~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~LPePLl~~~ly~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~ 256 (373)
+...|..+.+.|.. +.+|++.|..+||.-=...++-.- .+....++-.-.+-.....+..++.++...++..
T Consensus 19 d~~~i~~~v~~f~Y-------qGFDa~~vi~~l~erg~~~g~~~~-~D~k~mIVl~ltRGNk~~km~~kms~~Gk~~~~~ 90 (253)
T 4h5l_A 19 DSGTINAWVNEFAY-------QGFDPKRIVQLVKERGTAKGRDWK-KDVKMMIVLNLVRGNKPEAMMKKMSEKGASIVAN 90 (253)
T ss_dssp CHHHHHHHHHHHSB-------CSSCHHHHHHHHHHHHHHTTCCHH-HHHHHHHHHHHHHCSCHHHHHHTSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHhccchhhHH-HhHHHHhhhhhhcCCCHHHHHHHhCHHHHHHHHH
Confidence 56777788887763 457898888888764433332221 1221222222234456778888999999999999
Q ss_pred HHHHHHHHHhccCcCCCChhhHHHhhhh
Q 017326 257 VTALLLRVSQKSLLNKMDARSLAMEMAP 284 (373)
Q Consensus 257 L~~~L~~V~~~s~~NkM~~~nLA~vf~P 284 (373)
|+.+..-+..+...+-.|...+|.+|++
T Consensus 91 Li~~Y~Lk~~~~~r~~lTLsRVAa~fa~ 118 (253)
T 4h5l_A 91 LISVYQLKEGNPGRDTITLSRVSAAFVP 118 (253)
T ss_dssp HHHHHTBCSSSCCTTCBCHHHHHHHTHH
T ss_pred HHHHhCcccCCCCcccccHHHHHHHhhH
Confidence 9999998888888899999999999997
No 25
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=25.33 E-value=79 Score=24.25 Aligned_cols=40 Identities=10% Similarity=0.183 Sum_probs=33.7
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHHh
Q 017326 236 IHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME 281 (373)
Q Consensus 236 ~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~v 281 (373)
+..++.....|++..+.+..|++.+...+.. |++..||.-
T Consensus 5 ~~~I~~~~~~lt~~e~~ia~yil~~~~~~~~------~si~elA~~ 44 (107)
T 3iwf_A 5 LYKIDNQYPYFTKNEKKIAQFILNYPHKVVN------MTSQEIANQ 44 (107)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHCHHHHTT------CCHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhCHHHHHH------CCHHHHHHH
Confidence 4567778889999999999999999988876 788888853
No 26
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=25.09 E-value=5.2 Score=36.46 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCcCeEeecCCHHHHHHH
Q 017326 147 GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHL 184 (373)
Q Consensus 147 ~~~vP~iv~~~i~~i~~~gl~~eGIFR~~g~~~~i~~l 184 (373)
...+|..+..|+.-....|+...||||++|....|-..
T Consensus 209 ~~~~~~~l~~~~~~~~~~~l~~~g~~~v~~~~~~v~~~ 246 (263)
T 3a8p_A 209 ELPNPKSLLAATSRPSKLALGRLGVLSVSSFHALVCSR 246 (263)
T ss_dssp CCCCHHHHHTTCCHHHHHHHHHHTCCSHHHHHHHHHHT
T ss_pred CccchHHHHHHhcccccccccccEEEEeccceeeeeec
Confidence 34566999999988888999999999999988765443
No 27
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=23.45 E-value=20 Score=28.34 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=24.8
Q ss_pred ccccchhhhhhhhhhhHhhHHHHhhHHHhh-hccchh
Q 017326 17 FSSSGSKLREAGQSVGEVAKDAKGNAADVA-ERVGSA 52 (373)
Q Consensus 17 ~~~~~~~~~~~~~~y~~~~r~~kknlk~ly-vhp~~~ 52 (373)
|||-=+|.++|--- ++||.++-|. |||-..
T Consensus 75 FsR~iTK~EQADmG------kLKKSVrGLVVVHPMTa 105 (123)
T 2lf0_A 75 FQRAITKKEQADMG------KLKKSVRGLVVVHPMTA 105 (123)
T ss_dssp EEEECCHHHHHTHH------HHHHHTTSCEEECSSSH
T ss_pred ccccccHHHHHhHH------HHhhcccceeEecCchH
Confidence 77888888887654 8999999999 999654
No 28
>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4
Probab=23.15 E-value=78 Score=23.02 Aligned_cols=48 Identities=15% Similarity=0.342 Sum_probs=34.1
Q ss_pred CcCeEeecCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHHHHhCCCC
Q 017326 168 SQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEP 219 (373)
Q Consensus 168 ~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~lLK~fLr~LPeP 219 (373)
.+|-|.++|... ++.+.+.++-. .+++..+..++++++-..|..+|+.
T Consensus 7 ~dg~~~v~G~~~-l~dl~~~l~~~---~l~~~~~~~Tl~G~i~~~lg~iP~~ 54 (86)
T 2p4p_A 7 NEDSWLIDGATP-LEDVMRALNIH---TFPRDENYETIGGFMMYMLRXIPXX 54 (86)
T ss_dssp CCSEEEEETTSB-HHHHHHHTTCC---CSCCSCSSCBHHHHHHHHHCSCCCT
T ss_pred CCCEEEEEccCC-HHHHHHHhCCC---CCCcCCCCccHHHHHHHHhCCCCCC
Confidence 568999999754 56666666432 1222246889999999999999863
No 29
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=23.03 E-value=1.6 Score=34.95 Aligned_cols=57 Identities=12% Similarity=0.047 Sum_probs=38.1
Q ss_pred ccchhHHHHHHHhcCCccccccchhhhhHhhhhcccccccccccchhhhcccchhhHHH
Q 017326 48 RVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKVEEAA 106 (373)
Q Consensus 48 hp~~~~Ks~~~~~q~~~~~~~~~~~~iS~kf~tkify~~~lselke~v~~~~~~~~e~~ 106 (373)
||...+|+||+..+ ....+.|+++|+..+- ..++|.+.-...++..+.+.+.+++|.
T Consensus 2 ~p~~~~k~G~L~Kk-~~~~k~W~~rwfVL~~-~~L~yyK~~~~~~d~~P~gsI~L~~c~ 58 (120)
T 4a6h_A 2 HPFTEIKSGFLERR-SKFLKSYSKGYYVLTP-NFLHEFKTADRKKDLVPVMSLALSECT 58 (120)
T ss_dssp CCCCCSEEEEEEEE-ETTTTEEEEEEEEECS-SEEEEESSCCTTTCCSCSEEEEGGGEE
T ss_pred CCCcccEEEEEEEc-CCCCCCCccEEEEEeC-CEEEEEcCCCcCcCCCceEEEECCCCE
Confidence 44447788888777 4578899999988773 366666554444455566666666554
No 30
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=23.03 E-value=99 Score=23.72 Aligned_cols=38 Identities=8% Similarity=0.083 Sum_probs=31.5
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCcCCCChhhHHH
Q 017326 237 HAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM 280 (373)
Q Consensus 237 ~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA~ 280 (373)
..++.....|++..+.+..|++.+...|.. |++..||.
T Consensus 10 ~~i~~~~~~ls~~e~~ia~yil~~~~~~~~------~si~elA~ 47 (111)
T 2o3f_A 10 AIIQSMXHXLPPSERKLADYILAHPHXAIE------STVNEISA 47 (111)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHCHHHHHT------CCHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHChHHHHh------cCHHHHHH
Confidence 456667789999999999999999888876 77777775
No 31
>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4
Probab=21.04 E-value=97 Score=22.68 Aligned_cols=47 Identities=9% Similarity=0.133 Sum_probs=33.8
Q ss_pred CcCeEeecCCHHHHHHHHHHHcCCCCCCCCCC-CChhhhHHHHHHHHHhCCCC
Q 017326 168 SQFLFKAEGDKKVIQHLVSMYNQDPNASLPEG-VNPFDVAALAKYYLASLPEP 219 (373)
Q Consensus 168 ~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~-~d~~~va~lLK~fLr~LPeP 219 (373)
.+|-|.++|... ++.+.+.++- .+++. .+..++++++-..|..+|..
T Consensus 13 ~dg~~~v~G~~~-l~dl~~~l~~----~l~~~~~~~~TlgG~i~~~lg~iP~~ 60 (90)
T 2p13_A 13 ADGTWLMDGWIS-IRKASNLLEH----DLVDEAERYSTLGGYLLWQFGYIPAA 60 (90)
T ss_dssp TTSCEEEETTSB-HHHHHHHHTS----CCCCTTCCCCBHHHHHHHHHSSCCCT
T ss_pred CCCEEEEECcCC-HHHHHHHHCC----CCCCcCCCCccHHHHHHHHhCCCCCC
Confidence 468899999754 5667777753 22221 36789999999999999863
Done!