BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>017327
MELVSCPSYRCTISPKILTSQNGESKRSPFVFSSLRNTKKPSALSFSNVVTRDGYVGRGS
SSSFSGSTVNNKIYQRLGSCLIIPPLNGKKPRAIIKFLGGAFIGAVPEVTYSYLKELLAK
EGFLVISVPYNVTFDHANAANQVYERFNSCLDYVLSTGLPDANLTPDDLVNLPIYSVGHR
PATEAVPYFEQLGPLVNQMMPIVEASPVYSMARNASGDAWKLLLNTAEALIPGSDMESLV
SLNNFVDQLPSVFGQVTEGISEFKPTPSENLDCFKKSYNVQHTLLVKFSFDTIDQTDLLE
ETLKPRMESIGGTVEKVQLNGNHITPCIQEPKWQVGYIYTPADAIAQGLKTLSLNEIRIL
SKTISGWFGRFED

High Scoring Gene Products

Symbol, full name Information P value
AT3G43540 protein from Arabidopsis thaliana 6.7e-75
AT5G47860 protein from Arabidopsis thaliana 1.7e-16

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  017327
        (373 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2098199 - symbol:AT3G43540 "AT3G43540" species...   732  6.7e-75   2
TAIR|locus:2160962 - symbol:AT5G47860 species:3702 "Arabi...   226  1.7e-16   1


>TAIR|locus:2098199 [details] [associations]
            symbol:AT3G43540 "AT3G43540" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] GO:GO:0009507 EMBL:CP002686
            GenomeReviews:BA000014_GR EMBL:AL138644 eggNOG:NOG69588
            InterPro:IPR010765 Pfam:PF07082 EMBL:AY040022 EMBL:AY079370
            IPI:IPI00523807 PIR:T47396 RefSeq:NP_189940.1 UniGene:At.1267
            ProteinModelPortal:Q9M236 SMR:Q9M236 STRING:Q9M236 PaxDb:Q9M236
            PRIDE:Q9M236 EnsemblPlants:AT3G43540.1 GeneID:823446
            KEGG:ath:AT3G43540 TAIR:At3g43540 HOGENOM:HOG000232678
            InParanoid:Q9M236 OMA:PIYGLGH PhylomeDB:Q9M236
            ProtClustDB:CLSN2684282 ArrayExpress:Q9M236 Genevestigator:Q9M236
            Uniprot:Q9M236
        Length = 373

 Score = 732 (262.7 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
 Identities = 145/226 (64%), Positives = 177/226 (78%)

Query:   148 NSCLDYVLSTGLPDANLTPDDLVNLPIYSVGHRPATEAVPYFEQLGPLVNQMMPIVEASP 207
             N  L  VL TG   A   P   VN  I S  ++ ATEAVPYFEQLGPL+ QM+P+VEASP
Sbjct:   152 NGALLQVL-TGSYFAEKIPK--VNA-IISFNNKSATEAVPYFEQLGPLIQQMLPMVEASP 207

Query:   208 VYSMARNASGDAWKLLLNTAEALIPGSDMESLVSLNNFVDQLPSVFGQVTEGISEFKPTP 267
             VY MARNASGD  KLLL+TA   I  +D E+L S    VDQLPSVFG+V +G+SEF+P+P
Sbjct:   208 VYEMARNASGDVLKLLLDTAGTTILNNDQEALKSFTKLVDQLPSVFGEVGQGVSEFRPSP 267

Query:   268 SENLDCFKKSYNVQHTLLVKFSFDTIDQTDLLEETLKPRMESIGGTVEKVQLNGNHITPC 327
              EN +CFK SY+V HTLLV+F+ D ID+TDLLEETL+PR+ESIGGT+EKV+LNGNH+TPC
Sbjct:   268 LENRNCFKCSYSVPHTLLVQFNSDAIDETDLLEETLRPRIESIGGTLEKVRLNGNHLTPC 327

Query:   328 IQEPKWQVGYIYTPADAIAQGLKTLSLNEIRILSKTISGWFGRFED 373
             IQ+PKWQ+G +YTPADA+AQ LKT+ L+E R+LS+TI  WF RFE+
Sbjct:   328 IQDPKWQIGTVYTPADAVAQALKTIPLSETRVLSRTIVDWFRRFEN 373

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 88/136 (64%), Positives = 108/136 (79%)

Query:    70 NNKIYQRLGSCLIIPPL-NGKKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISV 128
             NNK+Y RL SCL+IPP    KKPRAI+KFLGGAF+GAVPE+TYSYLKELLAKEG+L++SV
Sbjct:    40 NNKVYTRLDSCLVIPPPPKFKKPRAIVKFLGGAFVGAVPELTYSYLKELLAKEGYLIVSV 99

Query:   129 PYNVTFDHANAANQVYERFNSCLDYVLSTGLPDANLTPDDLVNLPIYSVGH-RPATEAV- 186
             PYNVTFDH  AA QVYERFNSCLD ++S+G+P++NL P DL +LP++SVGH   A   V 
Sbjct:   100 PYNVTFDHEQAAKQVYERFNSCLDTIVSSGIPNSNLKPGDLADLPLFSVGHSNGALLQVL 159

Query:   187 --PYFEQLGPLVNQMM 200
                YF +  P VN ++
Sbjct:   160 TGSYFAEKIPKVNAII 175

 Score = 42 (19.8 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query:   132 VTFDHANAANQVYERFNSCL 151
             VT    +  N+VY R +SCL
Sbjct:    32 VTATGGSRNNKVYTRLDSCL 51


>TAIR|locus:2160962 [details] [associations]
            symbol:AT5G47860 species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM;IDA] EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0009507 EMBL:AB016886
            UniGene:At.26615 UniGene:At.63891 EMBL:AY058159 EMBL:AY142015
            IPI:IPI00537994 RefSeq:NP_199597.1 ProteinModelPortal:Q9FIJ5
            SMR:Q9FIJ5 IntAct:Q9FIJ5 STRING:Q9FIJ5 PaxDb:Q9FIJ5 PRIDE:Q9FIJ5
            EnsemblPlants:AT5G47860.1 GeneID:834837 KEGG:ath:AT5G47860
            TAIR:At5g47860 eggNOG:NOG69588 HOGENOM:HOG000006424
            InParanoid:Q9FIJ5 OMA:IADEVQF PhylomeDB:Q9FIJ5
            ProtClustDB:CLSN2686560 Genevestigator:Q9FIJ5 InterPro:IPR010765
            Pfam:PF07082 Uniprot:Q9FIJ5
        Length = 431

 Score = 226 (84.6 bits), Expect = 1.7e-16, P = 1.7e-16
 Identities = 89/340 (26%), Positives = 152/340 (44%)

Query:    20 SQNGESKRSPFVFSSLRNTKKPSALSFSNVVTRD-----GYVXXXXXXXXXXXTVNNKIY 74
             S N  S  S F F+  R +++    S  N + RD     G             TV N   
Sbjct:    22 SHNRRSLPSIFSFNKERVSRRVFCSSKENDINRDRNQSTGIQVYGEIERLLTETVKNSQS 81

Query:    75 QRLGS--------CLIIPPLNGKKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVI 126
                GS          ++ P N K P+ ++ F+GG F+GA P++TY    E LA++  LVI
Sbjct:    82 SSGGSSDWSEVEGAWVLKPRNSK-PKMVVHFIGGIFVGAAPQLTYRLFLERLAEKDVLVI 140

Query:   127 SVPYNVTFDHANAANQVYERFNSCLDYVLST--GLPDANL--TPDDLVNLPI---YSVGH 179
             + PY   FDH N A++V  +++ C   +      LP   +  +   +++L I   Y+V  
Sbjct:   141 ATPYASGFDHFNIADEVQFKYDRCCRSLQEEVQDLPSFGIGHSLGSVIHLLIGSRYAV-Q 199

Query:   180 RPATEAVPYFEQLG----PLVNQMM-PIVEA-SPVYSMARNASGDAW--KLLLNTAEALI 231
             R     + +  +      PL + ++ P+ ++  P+ S    +       ++     E L 
Sbjct:   200 RNGNVFMAFNNKEASLAIPLFSPVLVPMAQSLGPLLSQVATSPTIRLGAEMTRKQLETLS 259

Query:   232 PGSDMESLVSLNNFVDQLPSVFGQVTEGISEFKPTPSENLDCFKKSYNVQHTLLVKFSFD 291
             P   M+ ++ L   V+QLP ++  + +G  +F P P E     +  Y +   LL+KF  D
Sbjct:   260 PPI-MKQILPL---VEQLPPLYMDLVKGREDFVPKPEETRRLIRSYYGISRNLLIKFEDD 315

Query:   292 TIDQTDLLEETLKPRMESIGGTVE-KVQ-LNGNHITPCIQ 329
             +ID+T +L + L     SI   ++  ++ L G+H  P  Q
Sbjct:   316 SIDETSILAQVLGVE-SSISSKLDMSIRTLPGDHGLPLQQ 354


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.135   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      373       362   0.00082  117 3  11 22  0.41    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  228 KB (2125 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.33u 0.08s 29.41t   Elapsed:  00:00:01
  Total cpu time:  29.33u 0.08s 29.41t   Elapsed:  00:00:01
  Start:  Sat May 11 05:42:21 2013   End:  Sat May 11 05:42:22 2013

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