BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017327
         (373 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3VIS|A Chain A, Crystal Structure Of Cutinase Est119 From Thermobifida
           Alba Ahk119
 pdb|3VIS|B Chain B, Crystal Structure Of Cutinase Est119 From Thermobifida
           Alba Ahk119
          Length = 306

 Score = 34.3 bits (77), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 112 SYLKELLAKEGFLVISVPYNVTFDHANAANQVYERFNSCLDYVLS 156
           ++L E +A  GF+VI++  N T D  ++  +   + N+ LDY+L+
Sbjct: 113 AWLGERIASHGFVVIAIDTNTTLDQPDSRAR---QLNAALDYMLT 154


>pdb|3EOO|A Chain A, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
           Burkholderia Pseudomallei
 pdb|3EOO|B Chain B, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
           Burkholderia Pseudomallei
 pdb|3EOO|C Chain C, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
           Burkholderia Pseudomallei
 pdb|3EOO|D Chain D, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
           Burkholderia Pseudomallei
 pdb|3EOO|E Chain E, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
           Burkholderia Pseudomallei
 pdb|3EOO|F Chain F, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
           Burkholderia Pseudomallei
 pdb|3EOO|G Chain G, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
           Burkholderia Pseudomallei
 pdb|3EOO|H Chain H, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
           Burkholderia Pseudomallei
 pdb|3EOO|I Chain I, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
           Burkholderia Pseudomallei
 pdb|3EOO|J Chain J, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
           Burkholderia Pseudomallei
 pdb|3EOO|K Chain K, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
           Burkholderia Pseudomallei
 pdb|3EOO|L Chain L, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
           Burkholderia Pseudomallei
 pdb|3EOO|M Chain M, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
           Burkholderia Pseudomallei
 pdb|3EOO|N Chain N, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
           Burkholderia Pseudomallei
 pdb|3EOO|O Chain O, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
           Burkholderia Pseudomallei
 pdb|3EOO|P Chain P, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
           Burkholderia Pseudomallei
          Length = 298

 Score = 30.0 bits (66), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 14/130 (10%)

Query: 178 GHRPATEAVPYFEQLGPLVNQMMPIVEASPVYS---MARNASGDAWKLLLNTAEALI--- 231
           GHRP  E VP     G +V+++   V+A    +   MAR  +  A  +      A+    
Sbjct: 127 GHRPGKECVP----AGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAAIERAIAYVE 182

Query: 232 PGSDM---ESLVSLNNFVDQLPSVFGQVTEGISEFKPTPSENLDCFKKSYNVQHTLLVKF 288
            G+DM   E++ +L+++     +V   +   ++EF  TP   LD  K + NV   L    
Sbjct: 183 AGADMIFPEAMKTLDDYRRFKEAVKVPILANLTEFGSTPLFTLDELKGA-NVDIALYCCG 241

Query: 289 SFDTIDQTDL 298
           ++  +++  L
Sbjct: 242 AYRAMNKAAL 251


>pdb|2YVW|A Chain A, Crystal Structure Of Udp-N-Acetylglucosamine
           1-Carboxyvinyltransferase From Aquifex Aeolicus Vf5
          Length = 425

 Score = 29.6 bits (65), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 6/65 (9%)

Query: 70  NNKIYQRL-GSCLIIPPLNGKKPRAIIKFLGGAFIGAVP-EVTYSYLKELLA----KEGF 123
           N +I +R+  S L + PL G+  RA++   GG  IGA P +    + KE  A    +EG+
Sbjct: 92  NQEIIRRMRASVLSLGPLLGRFGRAVVGLPGGCSIGARPIDQHLKFFKEAGADVEVREGY 151

Query: 124 LVISV 128
           + +++
Sbjct: 152 VYVNL 156


>pdb|3SWG|A Chain A, Aquifex Aeolicus Mura In Complex With Udp-N-Acetylmuramic
           Acid And Covalent Adduct Of Pep With Cys124
          Length = 425

 Score = 29.6 bits (65), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 6/65 (9%)

Query: 70  NNKIYQRL-GSCLIIPPLNGKKPRAIIKFLGGAFIGAVP-EVTYSYLKELLA----KEGF 123
           N +I +R+  S L + PL G+  RA++   GG  IGA P +    + KE  A    +EG+
Sbjct: 92  NQEIIRRMRASVLSLGPLLGRFGRAVVGLPGGXSIGARPIDQHLKFFKEAGADVEVREGY 151

Query: 124 LVISV 128
           + +++
Sbjct: 152 VYVNL 156


>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
 pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
 pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
 pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
          Length = 289

 Score = 29.3 bits (64), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 18/127 (14%)

Query: 252 VFGQVTEGISEFKPTPSENLDCFKKSYN---VQHTLLVK--FSFDTIDQTDLLEET---- 302
           + G  T G+S F P P+E +    + Y    +++  L+   F FDT D TD L E     
Sbjct: 137 LMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLTDALFEARLNN 196

Query: 303 LKPRMESIGGTVEKVQLNGNH---ITPCIQEPK------WQVGYIYTPADAIAQGLKTLS 353
           +  R + +   V+ ++ N        P + E K      W     + P DA  + L  ++
Sbjct: 197 MLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVPMDAGLRLLSGIA 256

Query: 354 LNEIRIL 360
            +E+ I 
Sbjct: 257 GSELHIF 263


>pdb|1B96|A Chain A, Analysis Of A Mutational Hot-Spot In The Ecorv Restriction
           Endonuclease: A Catalytic Role For A Main Chain Carbonyl
           Group
 pdb|1B96|B Chain B, Analysis Of A Mutational Hot-Spot In The Ecorv Restriction
           Endonuclease: A Catalytic Role For A Main Chain Carbonyl
           Group
          Length = 244

 Score = 28.5 bits (62), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 309 SIGGTVEKVQLNGNHITPCIQE--PKWQVGYIYTPADAIAQGLKTLSLNEIRILSKTISG 366
           ++GG    ++ N  +I     +    W +GY+YT        LKT ++NE+  + K   G
Sbjct: 105 TLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVATRKSSLKTYNINELNEIPKPYKG 164


>pdb|1B97|A Chain A, Analysis Of A Mutational Hot-Spot In The Ecorv Restriction
           Endonuclease: A Catalytic Role For A Main Chain Carbonyl
           Group
 pdb|1B97|B Chain B, Analysis Of A Mutational Hot-Spot In The Ecorv Restriction
           Endonuclease: A Catalytic Role For A Main Chain Carbonyl
           Group
          Length = 244

 Score = 28.5 bits (62), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 309 SIGGTVEKVQLNGNHITPCIQE--PKWQVGYIYTPADAIAQGLKTLSLNEIRILSKTISG 366
           ++GG    ++ N  +I     +    W +GY+YT        LKT ++NE+  + K   G
Sbjct: 105 TLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVATRKSSLKTYNINELNEIPKPYKG 164


>pdb|2GE5|A Chain A, Ecorv Restriction Endonuclease C-Terminal Deletion
           MutantGATATCCA2+
 pdb|2GE5|B Chain B, Ecorv Restriction Endonuclease C-Terminal Deletion
           MutantGATATCCA2+
          Length = 219

 Score = 28.5 bits (62), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 309 SIGGTVEKVQLNGNHITPCIQE--PKWQVGYIYTPADAIAQGLKTLSLNEIRILSKTISG 366
           ++GG    ++ N  +I     +    W +GY+YT        LKT ++NE+  + K   G
Sbjct: 105 TLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVATRKSSLKTYNINELNEIPKPYKG 164


>pdb|2RVE|A Chain A, The Crystal Structure Of Ecorv Endonuclease And Of Its
           Complexes With Cognate And Non-Cognate Dna Segments
 pdb|2RVE|B Chain B, The Crystal Structure Of Ecorv Endonuclease And Of Its
           Complexes With Cognate And Non-Cognate Dna Segments
 pdb|4RVE|A Chain A, The Crystal Structure Of Ecorv Endonuclease And Of Its
           Complexes With Cognate And Non-Cognate Dna Segments
 pdb|4RVE|B Chain B, The Crystal Structure Of Ecorv Endonuclease And Of Its
           Complexes With Cognate And Non-Cognate Dna Segments
 pdb|4RVE|C Chain C, The Crystal Structure Of Ecorv Endonuclease And Of Its
           Complexes With Cognate And Non-Cognate Dna Segments
 pdb|1RVA|A Chain A, Mg2+ Binding To The Active Site Of Eco Rv Endonuclease: A
           Crystallographic Study Of Complexes With Substrate And
           Product Dna At 2 Angstroms Resolution
 pdb|1RVA|B Chain B, Mg2+ Binding To The Active Site Of Eco Rv Endonuclease: A
           Crystallographic Study Of Complexes With Substrate And
           Product Dna At 2 Angstroms Resolution
 pdb|1RVB|A Chain A, Mg2+ Binding To The Active Site Of Eco Rv Endonuclease: A
           Crystallographic Study Of Complexes With Substrate And
           Product Dna At 2 Angstroms Resolution
 pdb|1RVB|B Chain B, Mg2+ Binding To The Active Site Of Eco Rv Endonuclease: A
           Crystallographic Study Of Complexes With Substrate And
           Product Dna At 2 Angstroms Resolution
 pdb|1RVC|A Chain A, Mg2+ Binding To The Active Site Of Eco Rv Endonuclease: A
           Crystallographic Study Of Complexes With Substrate And
           Product Dna At 2 Angstroms Resolution
 pdb|1RVC|B Chain B, Mg2+ Binding To The Active Site Of Eco Rv Endonuclease: A
           Crystallographic Study Of Complexes With Substrate And
           Product Dna At 2 Angstroms Resolution
 pdb|1AZ0|A Chain A, Ecorv EndonucleaseDNA COMPLEX
 pdb|1AZ0|B Chain B, Ecorv EndonucleaseDNA COMPLEX
 pdb|1AZ3|A Chain A, Ecorv Endonuclease, Unliganded, Form B
 pdb|1AZ3|B Chain B, Ecorv Endonuclease, Unliganded, Form B
 pdb|1RV5|A Chain A, Complex Of Ecorv Endonuclease With D(Aaagat)D(ATCTT)
 pdb|1RV5|B Chain B, Complex Of Ecorv Endonuclease With D(Aaagat)D(ATCTT)
 pdb|1BGB|A Chain A, Ecorv Endonuclease Complex With 5'-Cgggatatccc Dna
 pdb|1BGB|B Chain B, Ecorv Endonuclease Complex With 5'-Cgggatatccc Dna
 pdb|1B94|A Chain A, Restriction Endonuclease Ecorv With Calcium
 pdb|1B94|B Chain B, Restriction Endonuclease Ecorv With Calcium
 pdb|1B95|A Chain A, Analysis Of A Mutational Hot-Spot In The Ecorv Restriction
           Endonuclease: A Catalytic Role For A Main Chain Carbonyl
           Group
 pdb|1B95|B Chain B, Analysis Of A Mutational Hot-Spot In The Ecorv Restriction
           Endonuclease: A Catalytic Role For A Main Chain Carbonyl
           Group
 pdb|1BSU|A Chain A, Structural And Energetic Origins Of Indirect Readout In
           Site-Specific Dna Cleavage By A Restriction Endonuclease
 pdb|1BSU|B Chain B, Structural And Energetic Origins Of Indirect Readout In
           Site-Specific Dna Cleavage By A Restriction Endonuclease
 pdb|1BUA|A Chain A, Structural And Energetic Origins Of Indirect Readout In
           Site-Specific Dna Cleavage By A Restriction Endonuclease
 pdb|1BUA|B Chain B, Structural And Energetic Origins Of Indirect Readout In
           Site-Specific Dna Cleavage By A Restriction Endonuclease
          Length = 244

 Score = 28.5 bits (62), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 309 SIGGTVEKVQLNGNHITPCIQE--PKWQVGYIYTPADAIAQGLKTLSLNEIRILSKTISG 366
           ++GG    ++ N  +I     +    W +GY+YT        LKT ++NE+  + K   G
Sbjct: 105 TLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVATRKSSLKTYNINELNEIPKPYKG 164


>pdb|1RVE|A Chain A, The Crystal Structure Of Ecorv Endonuclease And Of Its
           Complexes With Cognate And Non-Cognate Dna Fragments
 pdb|1RVE|B Chain B, The Crystal Structure Of Ecorv Endonuclease And Of Its
           Complexes With Cognate And Non-Cognate Dna Fragments
 pdb|1EO3|A Chain A, Inhibition Of Ecorv Endonuclease By Deoxyribo-3'-S-
           Phosphorothiolates: A High Resolution X-Ray
           Crystallographic Study
 pdb|1EO3|B Chain B, Inhibition Of Ecorv Endonuclease By Deoxyribo-3'-S-
           Phosphorothiolates: A High Resolution X-Ray
           Crystallographic Study
 pdb|1EO4|A Chain A, Ecorv Bound To Mn2+ And Cognate Dna Containing A 3's
           Substition At The Cleavage Site
 pdb|1EO4|B Chain B, Ecorv Bound To Mn2+ And Cognate Dna Containing A 3's
           Substition At The Cleavage Site
 pdb|1EON|A Chain A, Ecorv Bound To 3'-S-Phosphorothiolate Dna And Ca2+
 pdb|1EON|B Chain B, Ecorv Bound To 3'-S-Phosphorothiolate Dna And Ca2+
 pdb|1EOO|A Chain A, Ecorv Bound To Cognate Dna
 pdb|1EOO|B Chain B, Ecorv Bound To Cognate Dna
 pdb|1EOP|A Chain A, Ecorv Bound To Cognate Dna
 pdb|1EOP|B Chain B, Ecorv Bound To Cognate Dna
 pdb|2B0D|A Chain A, Ecorv Restriction EndonucleaseGAATTCCA2+
 pdb|2B0D|B Chain B, Ecorv Restriction EndonucleaseGAATTCCA2+
 pdb|2B0E|A Chain A, Ecorv Restriction EndonucleaseGAAUTCCA2+
 pdb|2B0E|B Chain B, Ecorv Restriction EndonucleaseGAAUTCCA2+
          Length = 245

 Score = 28.5 bits (62), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 309 SIGGTVEKVQLNGNHITPCIQE--PKWQVGYIYTPADAIAQGLKTLSLNEIRILSKTISG 366
           ++GG    ++ N  +I     +    W +GY+YT        LKT ++NE+  + K   G
Sbjct: 106 TLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVATRKSSLKTYNINELNEIPKPYKG 165


>pdb|1SUZ|A Chain A, The Structure Of K92a Ecorv Bound To Cognate Dna And Mg2+
 pdb|1SUZ|B Chain B, The Structure Of K92a Ecorv Bound To Cognate Dna And Mg2+
 pdb|1SX8|A Chain A, Ecorv Bound To Cognate Dna And Mn2+
 pdb|1SX8|B Chain B, Ecorv Bound To Cognate Dna And Mn2+
          Length = 244

 Score = 28.5 bits (62), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 309 SIGGTVEKVQLNGNHITPCIQE--PKWQVGYIYTPADAIAQGLKTLSLNEIRILSKTISG 366
           ++GG    ++ N  +I     +    W +GY+YT        LKT ++NE+  + K   G
Sbjct: 105 TLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVATRKSSLKTYNINELNEIPKPYKG 164


>pdb|1STX|A Chain A, Structure Of The K38a Mutant Of Ecorv Bound To Cognate Dna
           And Mn2+
 pdb|1STX|B Chain B, Structure Of The K38a Mutant Of Ecorv Bound To Cognate Dna
           And Mn2+
 pdb|1SX5|A Chain A, K38a Ecorv Bound To Cleaved Dna And Mn2+: P1 Crystal Form
 pdb|1SX5|B Chain B, K38a Ecorv Bound To Cleaved Dna And Mn2+: P1 Crystal Form
          Length = 244

 Score = 28.5 bits (62), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 309 SIGGTVEKVQLNGNHITPCIQE--PKWQVGYIYTPADAIAQGLKTLSLNEIRILSKTISG 366
           ++GG    ++ N  +I     +    W +GY+YT        LKT ++NE+  + K   G
Sbjct: 105 TLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVATRKSSLKTYNINELNEIPKPYKG 164


>pdb|1AZ4|A Chain A, Ecorv Endonuclease, Unliganded, Form B, T93a Mutant
 pdb|1AZ4|B Chain B, Ecorv Endonuclease, Unliganded, Form B, T93a Mutant
 pdb|1BSS|A Chain A, Ecorv-T93aDNACA2+
 pdb|1BSS|B Chain B, Ecorv-T93aDNACA2+
          Length = 244

 Score = 28.5 bits (62), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 309 SIGGTVEKVQLNGNHITPCIQE--PKWQVGYIYTPADAIAQGLKTLSLNEIRILSKTISG 366
           ++GG    ++ N  +I     +    W +GY+YT        LKT ++NE+  + K   G
Sbjct: 105 TLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVATRKSSLKTYNINELNEIPKPYKG 164


>pdb|2YH2|A Chain A, Pyrobaculum Calidifontis Esterase Monoclinic Form
 pdb|2YH2|B Chain B, Pyrobaculum Calidifontis Esterase Monoclinic Form
 pdb|2YH2|C Chain C, Pyrobaculum Calidifontis Esterase Monoclinic Form
 pdb|2YH2|D Chain D, Pyrobaculum Calidifontis Esterase Monoclinic Form
 pdb|3ZWQ|A Chain A, Hyperthermophilic Esterase From The Archeon Pyrobaculum
           Calidifontis
 pdb|3ZWQ|B Chain B, Hyperthermophilic Esterase From The Archeon Pyrobaculum
           Calidifontis
          Length = 313

 Score = 28.1 bits (61), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 85  PLNGKKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYNVTFDH 136
           P +G++  A++ + GG F+    E      + L    G +V+SV Y +  +H
Sbjct: 70  PRDGERLPAVVYYHGGGFVLGSVETHDHVCRRLANLSGAVVVSVDYRLAPEH 121


>pdb|2IU4|A Chain A, Dihydroxyacetone Kinase Operon Co-Activator Dha-Dhaq
 pdb|2IU4|B Chain B, Dihydroxyacetone Kinase Operon Co-Activator Dha-Dhaq
          Length = 336

 Score = 28.1 bits (61), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 283 TLLVKFSFDTIDQTDLLE-ETLKPRMESIGGTVEKVQLNGNHITPC-IQEPKWQVGYIYT 340
           TL+  +SF   D   LLE E L  +   +G  +    ++G  +T C +++PKW + Y+  
Sbjct: 264 TLMELYSFQ-YDVMRLLELEGLSVKFCKVGNLMTSCDMSGISLTLCSVKDPKW-LDYLNV 321

Query: 341 PADAIA 346
           P  A A
Sbjct: 322 PTGAFA 327


>pdb|2IU6|A Chain A, Regulation Of The Dha Operon Of Lactococcus Lactis
 pdb|2IU6|B Chain B, Regulation Of The Dha Operon Of Lactococcus Lactis
          Length = 336

 Score = 28.1 bits (61), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 283 TLLVKFSFDTIDQTDLLE-ETLKPRMESIGGTVEKVQLNGNHITPC-IQEPKWQVGYIYT 340
           TL+  +SF   D   LLE E L  +   +G  +    ++G  +T C +++PKW + Y+  
Sbjct: 264 TLMELYSFQ-YDVMRLLELEGLSVKFCKVGNLMTSCDMSGISLTLCSVKDPKW-LDYLNV 321

Query: 341 PADAIA 346
           P  A A
Sbjct: 322 PTGAFA 327


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,755,860
Number of Sequences: 62578
Number of extensions: 441658
Number of successful extensions: 1000
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 991
Number of HSP's gapped (non-prelim): 16
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)