BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017327
         (373 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9YUS2|DPOL_TUHV2 DNA polymerase OS=Tupaiid herpesvirus (strain 2) GN=DPOL PE=3 SV=1
          Length = 1171

 Score = 33.9 bits (76), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 151  LDYVLSTGLPD--ANLTPDDLVNLPIYSVGHRPATEAVPYFEQ-LGPLVNQMMPI 202
            + YVL+ G PD  AN    +L   P Y   HR    A  YFEQ +  + N + P+
Sbjct: 1062 VSYVLTAGPPDGRANAPNYELAEDPDYVAAHRVPIHAAKYFEQVVKAVTNTLYPV 1116


>sp|Q9YUS3|DPOL_TUHV1 DNA polymerase OS=Tupaiid herpesvirus 1 (strain 1) GN=DPOL PE=3 SV=1
          Length = 1171

 Score = 33.9 bits (76), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 151  LDYVLSTGLPD--ANLTPDDLVNLPIYSVGHRPATEAVPYFEQ-LGPLVNQMMPI 202
            + YVL+ G PD  AN    +L   P Y   HR    A  YFEQ +  + N + P+
Sbjct: 1062 VSYVLTAGPPDGRANAPNYELAEDPDYVAAHRVPIHAAKYFEQVVKAVTNTLYPV 1116


>sp|Q9Y608|LRRF2_HUMAN Leucine-rich repeat flightless-interacting protein 2 OS=Homo
           sapiens GN=LRRFIP2 PE=1 SV=1
          Length = 721

 Score = 33.5 bits (75), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 8/100 (8%)

Query: 212 ARNASGDAWKLLLNTAEALIPGSDMESLVSLNNFVDQLPSVFGQVTEGISEFKPTPSENL 271
           +R  SGD       T+  + P + +  L  + +  DQ+  V G+  +G+ E K + SE  
Sbjct: 324 SRRGSGD-------TSSLIDPDTSLSELRDIYDLKDQIQDVEGRYMQGLKELKESLSEVE 376

Query: 272 DCFKKSYNVQHTLLVKFSFDTIDQTDLLEETLKPRMESIG 311
           + +KK+  V +  L     + I Q D L++ ++ + E + 
Sbjct: 377 EKYKKAM-VSNAQLDNEKNNLIYQVDTLKDVIEEQEEQMA 415


>sp|Q7YKQ3|MATK_GRAOF Maturase K OS=Gratiola officinalis GN=matK PE=3 SV=1
          Length = 510

 Score = 33.5 bits (75), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 44  LSFSNVVTRDGYVGRGSSSSFSGSTVNNKIYQ-----RLGSCLIIPPLNGKKPRAIIKFL 98
           LS SN++ R G++ R  S  +SGS+  N +Y+     RL     +   +    RA +K L
Sbjct: 398 LSDSNIIYRFGHICRNLSHYYSGSSKKNSLYRIKYILRLSCARTLARKHKSTVRAFLKKL 457

Query: 99  GGAFI 103
           G   +
Sbjct: 458 GSELL 462


>sp|P32500|NDC1_YEAST Nucleoporin NDC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
           S288c) GN=NDC1 PE=1 SV=1
          Length = 655

 Score = 32.3 bits (72), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 6/114 (5%)

Query: 112 SYLKELLAKEGFLVISVPYNVTFDHANAANQVYERFNSCLDYVLSTGLPDANLTPDDLVN 171
           S+   +LA    L+IS    +TF+  N A   +     CL      G   +NL+   +  
Sbjct: 220 SFTNGVLAVTNLLIISCIIFITFEFINIAFDAHMSI-GCL----HKGKLISNLSSTPMET 274

Query: 172 LPIYSVGHRPATEAVPYFEQLGPLVNQMMPIVEASPVYSMARNASGDAWKLLLN 225
           L       +P T    Y ++L      + P + A   +S  R++SG+ W L+LN
Sbjct: 275 LLSGLSADKPFTRLTAY-QELAYRATSLDPSLRAPIYHSKFRSSSGNTWSLILN 327


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.134    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,842,842
Number of Sequences: 539616
Number of extensions: 5975946
Number of successful extensions: 15476
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 15475
Number of HSP's gapped (non-prelim): 12
length of query: 373
length of database: 191,569,459
effective HSP length: 119
effective length of query: 254
effective length of database: 127,355,155
effective search space: 32348209370
effective search space used: 32348209370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)