BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017328
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 354 bits (909), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 172/346 (49%), Positives = 233/346 (67%), Gaps = 11/346 (3%)
Query: 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSF 60
+ +IP+P WVL+ N D+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SF
Sbjct: 102 IVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSF 161
Query: 61 RDRFRDYL-GDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKAS 119
R+ D+L ++ +I+VGLGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A KA+
Sbjct: 162 RENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAA 220
Query: 120 AEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRIL 179
+ + +W P D+G+YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL
Sbjct: 221 VARAGHPEW--ELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQIL 278
Query: 180 AAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAI 239
A + F G KL+ KV+GIHW Y+ +HAAELTAGYYN DGY PIARML++H AI
Sbjct: 279 DEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAI 338
Query: 240 LNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATS 299
LNFTC+EMRD EQP +A P+ LVQQV + +AGENAL RYDA AY Q++ +
Sbjct: 339 LNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNA 398
Query: 300 NLDAGNGLG-------AFTYLRMHKKLFESDNWRNLVEFVQRMSSE 338
N G TYLR+ L + N+ +FV +M ++
Sbjct: 399 RPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 354 bits (909), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 172/346 (49%), Positives = 233/346 (67%), Gaps = 11/346 (3%)
Query: 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSF 60
+ +IP+P WVL+ N D+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SF
Sbjct: 102 IVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSF 161
Query: 61 RDRFRDYL-GDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKAS 119
R+ D+L ++ +I+VGLGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A KA+
Sbjct: 162 RENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAA 220
Query: 120 AEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRIL 179
+ + +W P D+G+YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL
Sbjct: 221 VARAGHPEW--ELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQIL 278
Query: 180 AAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAI 239
A + F G KL+ KV+GIHW Y+ +HAAELTAGYYN DGY PIARML++H AI
Sbjct: 279 DEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAI 338
Query: 240 LNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATS 299
LNFTC+EMRD EQP +A P+ LVQQV + +AGENAL RYDA AY Q++ +
Sbjct: 339 LNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNA 398
Query: 300 NLDAGNGLG-------AFTYLRMHKKLFESDNWRNLVEFVQRMSSE 338
N G TYLR+ L + N+ +FV +M ++
Sbjct: 399 RPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 354 bits (909), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 172/346 (49%), Positives = 233/346 (67%), Gaps = 11/346 (3%)
Query: 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSF 60
+ +IP+P WVL+ N D+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SF
Sbjct: 102 IVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSF 161
Query: 61 RDRFRDYL-GDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKAS 119
R+ D+L ++ +I+VGLGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A KA+
Sbjct: 162 RENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAA 220
Query: 120 AEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRIL 179
+ + +W P D+G+YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL
Sbjct: 221 VARAGHPEW--ELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQIL 278
Query: 180 AAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAI 239
A + F G KL+ KV+GIHW Y+ +HAAELTAGYYN DGY PIARML++H AI
Sbjct: 279 DEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAI 338
Query: 240 LNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATS 299
LNFTC+EMRD EQP +A P+ LVQQV + +AGENAL RYDA AY Q++ +
Sbjct: 339 LNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNA 398
Query: 300 NLDAGNGLG-------AFTYLRMHKKLFESDNWRNLVEFVQRMSSE 338
N G TYLR+ L + N+ +FV +M ++
Sbjct: 399 RPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 353 bits (907), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 172/346 (49%), Positives = 233/346 (67%), Gaps = 11/346 (3%)
Query: 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSF 60
+ +IP+P WVL+ N D+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SF
Sbjct: 102 IVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSF 161
Query: 61 RDRFRDYL-GDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKAS 119
R+ D+L ++ +I+VGLGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A KA+
Sbjct: 162 RENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAA 220
Query: 120 AEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRIL 179
+ + +W P D+G+YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL
Sbjct: 221 VARAGHPEW--ELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQIL 278
Query: 180 AAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAI 239
A + F G KL+ KV+GIHW Y+ +HAAELTAGYYN DGY PIARML++H AI
Sbjct: 279 DEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAI 338
Query: 240 LNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATS 299
LNFTC+EMRD EQP +A P+ LVQQV + +AGENAL RYDA AY Q++ +
Sbjct: 339 LNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREYIRVAGENALPRYDATAYNQIILNA 398
Query: 300 NLDAGNGLG-------AFTYLRMHKKLFESDNWRNLVEFVQRMSSE 338
N G TYLR+ L + N+ +FV +M ++
Sbjct: 399 RPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 353 bits (906), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 172/346 (49%), Positives = 233/346 (67%), Gaps = 11/346 (3%)
Query: 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSF 60
+ +IP+P WVL+ N D+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SF
Sbjct: 102 IVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSF 161
Query: 61 RDRFRDYL-GDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKAS 119
R+ D+L ++ +I+VGLGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A KA+
Sbjct: 162 RENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAA 220
Query: 120 AEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRIL 179
+ + +W P D+G+YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL
Sbjct: 221 VARAGHPEW--ELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQIL 278
Query: 180 AAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAI 239
A + F G KL+ KV+GIHW Y+ +HAAELTAGYYN DGY PIARML++H AI
Sbjct: 279 DEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAI 338
Query: 240 LNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATS 299
LNFTC+EMRD EQP +A P+ LVQQV + +AGENAL RYDA AY Q++ +
Sbjct: 339 LNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREYIRVAGENALPRYDATAYNQIILNA 398
Query: 300 NLDAGNGLG-------AFTYLRMHKKLFESDNWRNLVEFVQRMSSE 338
N G TYLR+ L + N+ +FV +M ++
Sbjct: 399 RPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 353 bits (906), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 171/346 (49%), Positives = 233/346 (67%), Gaps = 11/346 (3%)
Query: 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSF 60
+ +IP+P WVL+ N D+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SF
Sbjct: 102 IVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSF 161
Query: 61 RDRFRDYL-GDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKAS 119
R+ D+L ++ +I+VGLGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A KA+
Sbjct: 162 RENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAA 220
Query: 120 AEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRIL 179
+ + +W P D+G+YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL
Sbjct: 221 VARAGHPEW--ELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQIL 278
Query: 180 AAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAI 239
A + F G KL+ KV+GIHW Y+ +HAAELTAGYYN DGY PIARML++H AI
Sbjct: 279 DEANKAFLGXKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAI 338
Query: 240 LNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATS 299
LNF+C+EMRD EQP +A P+ LVQQV + +AGENAL RYDA AY Q++ +
Sbjct: 339 LNFSCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNA 398
Query: 300 NLDAGNGLG-------AFTYLRMHKKLFESDNWRNLVEFVQRMSSE 338
N G TYLR+ L + N+ +FV +M ++
Sbjct: 399 RPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 353 bits (905), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 171/346 (49%), Positives = 233/346 (67%), Gaps = 11/346 (3%)
Query: 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSF 60
+ +IP+P WVL+ N D+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SF
Sbjct: 102 IVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSF 161
Query: 61 RDRFRDYL-GDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKAS 119
R+ D+L ++ +I+VGLGP G+LRYP+YP+S G W+FPGIGEFQCYDKY++A KA+
Sbjct: 162 RENMSDFLESGLIIDIEVGLGPAGQLRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAA 220
Query: 120 AEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRIL 179
+ + +W P D+G+YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL
Sbjct: 221 VARAGHPEW--ELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQIL 278
Query: 180 AAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAI 239
A + F G KL+ KV+GIHW Y+ +HAAELTAGYYN DGY PIARML++H AI
Sbjct: 279 DEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAI 338
Query: 240 LNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATS 299
LNFTC+EMRD EQP +A P+ LVQQV + +AGENAL RYDA AY Q++ +
Sbjct: 339 LNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNA 398
Query: 300 NLDAGNGLG-------AFTYLRMHKKLFESDNWRNLVEFVQRMSSE 338
N G TYLR+ L + N+ +FV +M ++
Sbjct: 399 RPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 353 bits (905), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 171/346 (49%), Positives = 233/346 (67%), Gaps = 11/346 (3%)
Query: 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSF 60
+ +IP+P WVL+ N D+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SF
Sbjct: 102 IVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSF 161
Query: 61 RDRFRDYL-GDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKAS 119
R+ D+L ++ +I+VGLGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A KA+
Sbjct: 162 RENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAA 220
Query: 120 AEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRIL 179
+ + +W P D+G+YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL
Sbjct: 221 VARAGHPEW--ELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQIL 278
Query: 180 AAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAI 239
A + F G KL+ KV+GIHW Y+ +HAAELTAGYYN DGY PIARML++H AI
Sbjct: 279 DEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAI 338
Query: 240 LNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATS 299
LNFTC+EMRD EQP +A P+ LVQQV + +AG+NAL RYDA AY Q++ +
Sbjct: 339 LNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGQNALPRYDATAYNQIILNA 398
Query: 300 NLDAGNGLG-------AFTYLRMHKKLFESDNWRNLVEFVQRMSSE 338
N G TYLR+ L + N+ +FV +M ++
Sbjct: 399 RPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 5.4
pdb|1Q6F|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 7.1
Length = 495
Score = 353 bits (905), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 172/346 (49%), Positives = 232/346 (67%), Gaps = 11/346 (3%)
Query: 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSF 60
+ +IP+P WVL+ N D+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SF
Sbjct: 102 IVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSF 161
Query: 61 RDRFRDYL-GDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKAS 119
R+ D+L ++ +I VGLGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A KA+
Sbjct: 162 RENMSDFLESGLIIDIYVGLGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAA 220
Query: 120 AEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRIL 179
+ + +W P D+G+YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL
Sbjct: 221 VARAGHPEW--ELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQIL 278
Query: 180 AAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAI 239
A + F G KL+ KV+GIHW Y+ +HAAELTAGYYN DGY PIARML++H AI
Sbjct: 279 DEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAI 338
Query: 240 LNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATS 299
LNFTC+EMRD EQP +A P+ LVQQV + +AGENAL RYDA AY Q++ +
Sbjct: 339 LNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNA 398
Query: 300 NLDAGNGLG-------AFTYLRMHKKLFESDNWRNLVEFVQRMSSE 338
N G TYLR+ L + N+ +FV +M ++
Sbjct: 399 RPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 352 bits (904), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 171/346 (49%), Positives = 232/346 (67%), Gaps = 11/346 (3%)
Query: 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSF 60
+ +IP+P WVL+ N D+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SF
Sbjct: 102 IVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSF 161
Query: 61 RDRFRDYL-GDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKAS 119
R+ D+L ++ +I+VGLGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A KA+
Sbjct: 162 RENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAA 220
Query: 120 AEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRIL 179
+ + +W P D+G+YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL
Sbjct: 221 VARAGHPEW--ELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQIL 278
Query: 180 AAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAI 239
A + F G KL+ KV+GIHW Y+ +HAAELTAGYYN DGY PIARML++H AI
Sbjct: 279 DEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAI 338
Query: 240 LNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATS 299
LNF C+EMRD EQP +A P+ LVQQV + +AGENAL RYDA AY Q++ +
Sbjct: 339 LNFVCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNA 398
Query: 300 NLDAGNGLG-------AFTYLRMHKKLFESDNWRNLVEFVQRMSSE 338
N G TYLR+ L + N+ +FV +M ++
Sbjct: 399 RPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta- Amylase
Length = 495
Score = 352 bits (904), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 171/346 (49%), Positives = 232/346 (67%), Gaps = 11/346 (3%)
Query: 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSF 60
+ +IP+P WVL+ N D+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SF
Sbjct: 102 IVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSF 161
Query: 61 RDRFRDYL-GDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKAS 119
R+ D+L ++ +I+VGLGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A KA+
Sbjct: 162 RENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAA 220
Query: 120 AEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRIL 179
+ + +W P D+G+YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL
Sbjct: 221 VARAGHPEW--ELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQIL 278
Query: 180 AAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAI 239
A + F G KL+ KV+GIHW Y+ +HAAELTAGYYN DGY PIARML++H AI
Sbjct: 279 DEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAI 338
Query: 240 LNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATS 299
LNF C+EMRD EQP +A P+ LVQQV + +AGENAL RYDA AY Q++ +
Sbjct: 339 LNFACLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNA 398
Query: 300 NLDAGNGLG-------AFTYLRMHKKLFESDNWRNLVEFVQRMSSE 338
N G TYLR+ L + N+ +FV +M ++
Sbjct: 399 RPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 352 bits (903), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 171/346 (49%), Positives = 232/346 (67%), Gaps = 11/346 (3%)
Query: 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSF 60
+ +IP+P WVL+ N D+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SF
Sbjct: 102 IVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSF 161
Query: 61 RDRFRDYL-GDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKAS 119
R+ D+L ++ +I+VGLGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A KA+
Sbjct: 162 RENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAA 220
Query: 120 AEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRIL 179
+ + +W P D+G+YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL
Sbjct: 221 VARAGHPEW--ELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQIL 278
Query: 180 AAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAI 239
A + F G KL+ KV+GIHW Y+ +HAAELTAGYYN DGY PIARML++H AI
Sbjct: 279 DEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAI 338
Query: 240 LNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATS 299
L FTC+EMRD EQP +A P+ LVQQV + +AGENAL RYDA AY Q++ +
Sbjct: 339 LTFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNA 398
Query: 300 NLDAGNGLG-------AFTYLRMHKKLFESDNWRNLVEFVQRMSSE 338
N G TYLR+ L + N+ +FV +M ++
Sbjct: 399 RPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 351 bits (901), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 171/346 (49%), Positives = 232/346 (67%), Gaps = 11/346 (3%)
Query: 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSF 60
+ +IP+P WVL+ N D+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SF
Sbjct: 102 IVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSF 161
Query: 61 RDRFRDYL-GDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKAS 119
R+ D+L ++ +I+VGLGP GELRYP+YP+S G W+FP IGEFQCYDKY++A KA+
Sbjct: 162 RENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQG-WEFPRIGEFQCYDKYLKADFKAA 220
Query: 120 AEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRIL 179
+ + +W P D+G+YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL
Sbjct: 221 VARAGHPEW--ELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQIL 278
Query: 180 AAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAI 239
A + F G KL+ KV+GIHW Y+ +HAAELTAGYYN DGY PIARML++H AI
Sbjct: 279 DEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAI 338
Query: 240 LNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATS 299
LNFTC+EMRD EQP +A P+ LVQQV + +AGENAL RYDA AY Q++ +
Sbjct: 339 LNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNA 398
Query: 300 NLDAGNGLG-------AFTYLRMHKKLFESDNWRNLVEFVQRMSSE 338
N G TYLR+ L + N+ +FV +M ++
Sbjct: 399 KPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 351 bits (900), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 171/346 (49%), Positives = 232/346 (67%), Gaps = 11/346 (3%)
Query: 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSF 60
+ +IP+P WVL+ N D+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SF
Sbjct: 98 IVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSF 157
Query: 61 RDRFRDYL-GDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKAS 119
R+ D+L ++ +I+VGLGP GELRYP+YP+S G W+FP IGEFQCYDKY++A KA+
Sbjct: 158 RENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQG-WEFPRIGEFQCYDKYLKADFKAA 216
Query: 120 AEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRIL 179
+ + +W P D+G+YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL
Sbjct: 217 VARAGHPEW--ELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQIL 274
Query: 180 AAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAI 239
A + F G KL+ KV+GIHW Y+ +HAAELTAGYYN DGY PIARML++H AI
Sbjct: 275 DEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAI 334
Query: 240 LNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATS 299
LNFTC+EMRD EQP +A P+ LVQQV + +AGENAL RYDA AY Q++ +
Sbjct: 335 LNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNA 394
Query: 300 NLDAGNGLG-------AFTYLRMHKKLFESDNWRNLVEFVQRMSSE 338
N G TYLR+ L + N+ +FV +M ++
Sbjct: 395 KPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHAD 440
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 344 bits (883), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 171/344 (49%), Positives = 229/344 (66%), Gaps = 12/344 (3%)
Query: 4 IPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDR 63
IP+P W+L+ KNPD+ YT+++G RN EY+SLG D L +GRT +++Y D+M SFRD
Sbjct: 106 IPIPQWILQIGDKNPDIFYTNRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDN 165
Query: 64 FRDYL--GDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAE 121
D+L GD+V +I+VG G GELRYP+YPE+ G W FPGIGEFQCYDKYM A K + +
Sbjct: 166 MADFLKAGDIV-DIEVGCGAAGELRYPSYPETQG-WVFPGIGEFQCYDKYMVADWKEAVK 223
Query: 122 ASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAA 181
+ N DW G +G YN P+ T FFR +GT+ ++ G+FF+ WYS KLI HGD++L
Sbjct: 224 QAGNADWEMPG-KGAGTYNDTPDKTEFFRPNGTYKTDMGKFFLTWYSNKLIIHGDQVLEE 282
Query: 182 AKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAILN 241
A ++F G ++ KV+GIHW Y SHAAELTAG+YN DGY PIARMLA+H A LN
Sbjct: 283 ANKVFVGLRVNIAAKVSGIHWWYNHVSHAAELTAGFYNVAGRDGYRPIARMLARHHATLN 342
Query: 242 FTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNL 301
FTC+EMRD EQP A +P+ LVQQV + +++AGENAL RYDA AY Q+L
Sbjct: 343 FTCLEMRDSEQPAEAKSAPQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLKLRP 402
Query: 302 DAGN-------GLGAFTYLRMHKKLFESDNWRNLVEFVQRMSSE 338
+ N + TYLR+ L ++DN+ +FV++M ++
Sbjct: 403 NGVNLNGPPKLKMSGLTYLRLSDDLLQTDNFELFKKFVKKMHAD 446
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
Length = 500
Score = 344 bits (882), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 181/354 (51%), Positives = 234/354 (66%), Gaps = 13/354 (3%)
Query: 3 SIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRD 62
+IP+P WV + +++PD+ YTD G RN EY++LG D PL GR+ +Q+Y+DYM SFR+
Sbjct: 98 NIPIPQWVRDVGTRDPDIFYTDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRE 157
Query: 63 RFRDYL-GDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAE 121
+D+L V+ +I+VGLGP GELRYP+YP+S+G W FPGIGEF CYDKY++A KA+A
Sbjct: 158 NMKDFLDAGVIVDIEVGLGPAGELRYPSYPQSHG-WSFPGIGEFICYDKYLQADFKAAAA 216
Query: 122 ASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAA 181
A + +W P+D+GQYN PE T FFR +GT+ SE GRFF+ WYS LI+HGDRIL
Sbjct: 217 AVGHPEW--EFPNDAGQYNDTPERTQFFRDNGTYLSEKGRFFLAWYSNNLIKHGDRILDE 274
Query: 182 AKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAILN 241
A ++F G +L+ K+AG+HW Y+ SHAAELTAGYYN DGY IARML +H A +N
Sbjct: 275 ANKVFLGYKVQLAIKIAGVHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASIN 334
Query: 242 FTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNL 301
FTC EMRD EQP +A +PE LVQQV A G+ ++ ENAL RYD AY +L +
Sbjct: 335 FTCAEMRDSEQPPDAMSAPEELVQQVLSAGWREGLNVSCENALPRYDPTAYNTILRNARP 394
Query: 302 DAGNGLG-------AFTYLRMHKKLFESDNWRNLVEFVQRMSSEGRRPRLPEWD 348
N G FTYLR+ +L E N+ N FV RM + PR P D
Sbjct: 395 HGINQSGPPEHKLFGFTYLRLSNQLVEGQNYVNFKTFVDRMHA--NLPRDPYVD 446
>pdb|2XFF|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Acarbose
pdb|2XFR|A Chain A, Crystal Structure Of Barley Beta-Amylase At Atomic
Resolution
pdb|2XFY|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Alpha-Cyclodextrin
pdb|2XG9|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
4-O- Alpha-D-Glucopyranosylmoranoline
pdb|2XGB|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
2,3- Epoxypropyl-Alpha-D-Glucopyranoside
pdb|2XGI|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
3,4- Epoxybutyl Alpha-D-Glucopyranoside
Length = 535
Score = 338 bits (868), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 179/354 (50%), Positives = 231/354 (65%), Gaps = 13/354 (3%)
Query: 3 SIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRD 62
+IP+P WV + +++PD+ YTD G RN EY++LG D PL GR+ +Q+Y+DYM SFR+
Sbjct: 102 NIPIPQWVRDVGTRDPDIFYTDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRE 161
Query: 63 RFRDYL-GDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAE 121
+++L V+ +I+VGLGP GE+RYP+YP+S+G W FPGIGEF CYDKY++A KA+A
Sbjct: 162 NMKEFLDAGVIVDIEVGLGPAGEMRYPSYPQSHG-WSFPGIGEFICYDKYLQADFKAAAA 220
Query: 122 ASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAA 181
A + +W P+D GQYN PE T FFR +GT+ SE GRFF+ WYS LI+HGDRIL
Sbjct: 221 AVGHPEW--EFPNDVGQYNDTPERTQFFRDNGTYLSEKGRFFLAWYSNNLIKHGDRILDE 278
Query: 182 AKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAILN 241
A ++F G +L+ K++GIHW Y+ SHAAELTAGYYN DGY IARML +H A +N
Sbjct: 279 ANKVFLGYKVQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASIN 338
Query: 242 FTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNL 301
FTC EMRD EQ A +PE LVQQV A G+ +A ENAL RYD AY +L +
Sbjct: 339 FTCAEMRDSEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARP 398
Query: 302 DAGNGLG-------AFTYLRMHKKLFESDNWRNLVEFVQRMSSEGRRPRLPEWD 348
N G FTYLR+ +L E N+ N FV RM + PR P D
Sbjct: 399 HGINQSGPPEHKLFGFTYLRLSNQLVEGQNYANFKTFVDRMHA--NLPRDPYVD 450
>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase
From Paenibacillus Polymyxa
Length = 419
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 136/291 (46%), Gaps = 29/291 (9%)
Query: 3 SIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRD 62
+IPLP W+ + S + ++ + D+SG N E +S PL G + Y + SF +
Sbjct: 92 NIPLPSWLSSKGSAD-EMQFKDESGYANSEALS------PLWSGTG--KQYDELYASFAE 142
Query: 63 RFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEA 122
F Y ++ +I + GP GELRYP+Y + G W +PG G+FQ Y + + + + +
Sbjct: 143 NFAGYK-SIIPKIYLSGGPSGELRYPSYYPAAG-WSYPGRGKFQAYTETAKNAFRTAMND 200
Query: 123 S------SNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGD 176
N WG S Q N P D F +G +NS YG+ F+ WY L +H
Sbjct: 201 KYGSLDKINAAWGTKLTSLS-QINP-PTDGDGFYTNGGYNSAYGKDFLSWYQSVLEKHLG 258
Query: 177 RILAAAKEIFQGT-GSKLSGKVAGIHWHYRSRS--HAAELTAGYYNTRYCDGYIPIARML 233
I AAA + F G ++ K++G+HW + + H E GYY+ Y + +
Sbjct: 259 VIGAAAHKNFDSVFGVRIGAKISGLHWQMNNPAMPHGTEQAGGYYD------YNRLIQKF 312
Query: 234 AKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENAL 284
L FTC+EM D N + P LV V GV L GENAL
Sbjct: 313 KDADLDLTFTCLEMSDSGTAPNYSL-PSTLVDTVSSIANAKGVRLNGENAL 362
>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N)
MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5
Length = 516
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 151/330 (45%), Gaps = 34/330 (10%)
Query: 3 SIPLPPWVLEEISKNPDLVYTDKSGRRNPEYIS-LGCDTIPLLRGRTPIQVYSDYMRSFR 61
++P+P WV + S + L + ++G N E ++ L D I + Y + +F
Sbjct: 100 NVPIPSWVWNQKSDD-SLYFKSETGTVNKETLNPLASDVIR--------KEYGELYTAFA 150
Query: 62 DRFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASL----- 116
+ Y DV+ +I++ GP GELRYP+Y S+GT +P G+FQ Y ++ ++
Sbjct: 151 AAMKPY-KDVIAKIELSGGPAGELRYPSYTTSDGT-GYPSRGKFQAYTEFAKSKFRLWVL 208
Query: 117 -KASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHG 175
K + N+ WG + P D F +G + S YG+ ++EWY G L H
Sbjct: 209 NKYGSLNEVNKAWGTKLISELAILP--PSDGEQFLMNG-YLSMYGKDYLEWYQGILENHT 265
Query: 176 DRILAAAKEIFQGT-GSKLSGKVAGIHWHYRSRS--HAAELTAGYYNTRYCDGYIPIARM 232
I A F T + K+AG+HW Y + + H AE AGY + + A++
Sbjct: 266 KLIGELAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEKPAGYNDYSHLLDAFKSAKL 325
Query: 233 LAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAY 292
+NFTC+EM D+ + P+ LVQ + G+ L GENAL + + Y
Sbjct: 326 ------DVNFTCLEMTDKGSYPEYSM-PKTLVQNIATLANEKGIVLNGENALSIGNEEEY 378
Query: 293 AQVLATSNLDAGNGLGAFTYLRMHKKLFES 322
+V + + FT LR ++ +
Sbjct: 379 KRV---AEMAFNYNFAGFTLLRYQDVMYNN 405
>pdb|1VEN|A Chain A, Crystal Structure Analysis Of Y164eMALTOSE OF BACILUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 150/330 (45%), Gaps = 34/330 (10%)
Query: 3 SIPLPPWVLEEISKNPDLVYTDKSGRRNPEYIS-LGCDTIPLLRGRTPIQVYSDYMRSFR 61
++P+P WV + S + L + ++G N E ++ L D I + Y + +F
Sbjct: 100 NVPIPSWVWNQKSDD-SLYFKSETGTVNKETLNPLASDVIR--------KEYGELYTAFA 150
Query: 62 DRFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASL----- 116
+ Y DV+ +I++ GP GELRYP+Y S+GT +P G+FQ Y ++ ++
Sbjct: 151 AAMKPY-KDVIAKIELSGGPAGELRYPSYTTSDGT-GYPSRGKFQAYTEFAKSKFRLWVL 208
Query: 117 -KASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHG 175
K + N+ WG + P D F +G + S YG+ ++EWY G L H
Sbjct: 209 NKYGSLNEVNKAWGTKLISELAILP--PSDGEQFLMNG-YLSMYGKDYLEWYQGILENHT 265
Query: 176 DRILAAAKEIFQGT-GSKLSGKVAGIHWHYRSRS--HAAELTAGYYNTRYCDGYIPIARM 232
I A F T + K+AG+HW Y + + H AE AGY + + A++
Sbjct: 266 KLIGELAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEKPAGYNDYSHLLDAFKSAKL 325
Query: 233 LAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAY 292
+ FTC+EM D+ + P+ LVQ + G+ L GENAL + + Y
Sbjct: 326 ------DVTFTCLEMTDKGSYPEYSM-PKTLVQNIATLANEKGIVLNGENALSIGNEEEY 378
Query: 293 AQVLATSNLDAGNGLGAFTYLRMHKKLFES 322
+V + + FT LR ++ +
Sbjct: 379 KRV---AEMAFNYNFAGFTLLRYQDVMYNN 405
>pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form
pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed With Maltose
pdb|5BCA|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|1J18|A Chain A, Crystal Structure Of A Beta-Amylase From Bacillus Cereus
Var. Mycoides Cocrystallized With Maltose
pdb|1J0Y|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Z|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J10|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J11|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J12|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1VEM|A Chain A, Crystal Structure Analysis Of Bacillus Cereus Beta-amylase
At The Optimum Ph (6.5)
Length = 516
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 149/330 (45%), Gaps = 34/330 (10%)
Query: 3 SIPLPPWVLEEISKNPDLVYTDKSGRRNPEYIS-LGCDTIPLLRGRTPIQVYSDYMRSFR 61
++P+P WV + S + L + ++G N E ++ L D I + Y + +F
Sbjct: 100 NVPIPSWVWNQKSDD-SLYFKSETGTVNKETLNPLASDVIR--------KEYGELYTAFA 150
Query: 62 DRFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASL----- 116
+ Y DV+ +I + GP GELRYP+Y S+GT +P G+FQ Y ++ ++
Sbjct: 151 AAMKPY-KDVIAKIYLSGGPAGELRYPSYTTSDGT-GYPSRGKFQAYTEFAKSKFRLWVL 208
Query: 117 -KASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHG 175
K + N+ WG + P D F +G + S YG+ ++EWY G L H
Sbjct: 209 NKYGSLNEVNKAWGTKLISELAILP--PSDGEQFLMNG-YLSMYGKDYLEWYQGILENHT 265
Query: 176 DRILAAAKEIFQGT-GSKLSGKVAGIHWHYRSRS--HAAELTAGYYNTRYCDGYIPIARM 232
I A F T + K+AG+HW Y + + H AE AGY + + A++
Sbjct: 266 KLIGELAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEKPAGYNDYSHLLDAFKSAKL 325
Query: 233 LAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAY 292
+ FTC+EM D+ + P+ LVQ + G+ L GENAL + + Y
Sbjct: 326 ------DVTFTCLEMTDKGSYPEYSM-PKTLVQNIATLANEKGIVLNGENALSIGNEEEY 378
Query: 293 AQVLATSNLDAGNGLGAFTYLRMHKKLFES 322
+V + + FT LR ++ +
Sbjct: 379 KRV---AEMAFNYNFAGFTLLRYQDVMYNN 405
>pdb|1VEO|A Chain A, Crystal Structure Analysis Of Y164fMALTOSE OF BACILLUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 149/330 (45%), Gaps = 34/330 (10%)
Query: 3 SIPLPPWVLEEISKNPDLVYTDKSGRRNPEYIS-LGCDTIPLLRGRTPIQVYSDYMRSFR 61
++P+P WV + S + L + ++G N E ++ L D I + Y + +F
Sbjct: 100 NVPIPSWVWNQKSDD-SLYFKSETGTVNKETLNPLASDVIR--------KEYGELYTAFA 150
Query: 62 DRFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASL----- 116
+ Y DV+ +I + GP GELRYP+Y S+GT +P G+FQ Y ++ ++
Sbjct: 151 AAMKPY-KDVIAKIFLSGGPAGELRYPSYTTSDGT-GYPSRGKFQAYTEFAKSKFRLWVL 208
Query: 117 -KASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHG 175
K + N+ WG + P D F +G + S YG+ ++EWY G L H
Sbjct: 209 NKYGSLNEVNKAWGTKLISELAILP--PSDGEQFLMNG-YLSMYGKDYLEWYQGILENHT 265
Query: 176 DRILAAAKEIFQGT-GSKLSGKVAGIHWHYRSRS--HAAELTAGYYNTRYCDGYIPIARM 232
I A F T + K+AG+HW Y + + H AE AGY + + A++
Sbjct: 266 KLIGELAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEKPAGYNDYSHLLDAFKSAKL 325
Query: 233 LAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAY 292
+ FTC+EM D+ + P+ LVQ + G+ L GENAL + + Y
Sbjct: 326 ------DVTFTCLEMTDKGSYPEYSM-PKTLVQNIATLANEKGIVLNGENALSIGNEEEY 378
Query: 293 AQVLATSNLDAGNGLGAFTYLRMHKKLFES 322
+V + + FT LR ++ +
Sbjct: 379 KRV---AEMAFNYNFAGFTLLRYQDVMYNN 405
>pdb|1ITC|A Chain A, Beta-amylase From Bacillus Cereus Var. Mycoides Complexed
With Maltopentaose
Length = 516
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 148/330 (44%), Gaps = 34/330 (10%)
Query: 3 SIPLPPWVLEEISKNPDLVYTDKSGRRNPEYIS-LGCDTIPLLRGRTPIQVYSDYMRSFR 61
++P+P WV + S + L + ++G N E ++ L D I + Y + +F
Sbjct: 100 NVPIPSWVWNQKSDD-SLYFKSETGTVNKETLNPLASDVIR--------KEYGELYTAFA 150
Query: 62 DRFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASL----- 116
+ Y DV+ +I + GP G LRYP+Y S+GT +P G+FQ Y ++ ++
Sbjct: 151 AAMKPY-KDVIAKIYLSGGPAGALRYPSYTTSDGT-GYPSRGKFQAYTEFAKSKFRLWVL 208
Query: 117 -KASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHG 175
K + N+ WG + P D F +G + S YG+ ++EWY G L H
Sbjct: 209 NKYGSLNEVNKAWGTKLISELAILP--PSDGEQFLMNG-YLSMYGKDYLEWYQGILENHT 265
Query: 176 DRILAAAKEIFQGT-GSKLSGKVAGIHWHYRSRS--HAAELTAGYYNTRYCDGYIPIARM 232
I A F T + K+AG+HW Y + + H AE AGY + + A++
Sbjct: 266 KLIGELAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEKPAGYNDYSHLLDAFKSAKL 325
Query: 233 LAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAY 292
+ FTC+EM D+ + P+ LVQ + G+ L GENAL + + Y
Sbjct: 326 ------DVTFTCLEMTDKGSYPEYSM-PKTLVQNIATLANEKGIVLNGENALSIGNEEEY 378
Query: 293 AQVLATSNLDAGNGLGAFTYLRMHKKLFES 322
+V + + FT LR ++ +
Sbjct: 379 KRV---AEMAFNYNFAGFTLLRYQDVMYNN 405
>pdb|4I77|L Chain L, Lebrikizumab Fab Bound To Il-13
Length = 218
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 25/60 (41%)
Query: 159 YGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYY 218
YG FM WY K Q ++ A + G + SG +G + S AE A YY
Sbjct: 32 YGNSFMHWYQQKPGQPPKLLIYLASNLESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYY 91
>pdb|4G5Z|L Chain L, Crystal Structure Of The Therapeutical Antibody Fragment
Of Canakinumab In Its Unbound State
pdb|4G6J|L Chain L, Crystal Structure Of Human Il-1beta In Complex With The
Therapeutic Antibody Binding Fragment Of Canakinumab
Length = 212
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 164 MEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYY 218
+ WY K Q ++ A + F G S+ SG +G + S AE A YY
Sbjct: 33 LHWYQQKPDQSPKLLIKYASQSFSGVPSRFSGSGSGTDFTLTINSLEAEDAAAYY 87
>pdb|1SAZ|A Chain A, Membership In The Askha Superfamily: Enzymological
Properties And Crystal Structure Of Butyrate Kinase 2
From Thermotoga Maritima
Length = 381
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 6 LPPWVLEEIS-KNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRF 64
L PW+ + +S P LV+ + E +L + +LRG + YS+ R +R+R+
Sbjct: 312 LVPWITKRVSFIAPVLVFPGSN-----EEKALALSALRVLRGEEKPKNYSEESRRWRERY 366
Query: 65 RDYLGDVVQ 73
YL +++
Sbjct: 367 DSYLDGILR 375
>pdb|1AFV|L Chain L, Hiv-1 Capsid Protein (P24) Complex With Fab25.3
pdb|1AFV|M Chain M, Hiv-1 Capsid Protein (P24) Complex With Fab25.3
Length = 217
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 159 YGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYY 218
YG FM W+ K Q ++ AA + G ++ SG +G + E TA Y+
Sbjct: 32 YGISFMNWFQQKPGQPPKLLIYAASNLGSGVPARFSGSGSGTDFSLNIHPMEEEDTAMYF 91
>pdb|1X9J|A Chain A, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|B Chain B, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|C Chain C, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|D Chain D, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|E Chain E, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|F Chain F, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|G Chain G, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|H Chain H, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
Length = 375
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 6 LPPWVLEEIS-KNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRF 64
L PW+ + +S P LV+ + E +L + +LRG + YS+ R +R+R+
Sbjct: 312 LVPWITKRVSFIAPVLVFPGSN-----EEKALALSALRVLRGEEKPKNYSEESRRWRERY 366
Query: 65 RDYLGDVVQ 73
YL +++
Sbjct: 367 DSYLDGILR 375
>pdb|2ZCK|L Chain L, Crystal Structure Of A Ternary Complex Between Psa, A
Substrat-Acyl Intermediate And An Activating Antibody
pdb|2ZCL|L Chain L, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
Length = 218
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 160 GRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYY 218
G +M WY K Q ++ AA + G ++LSG +G + + E A YY
Sbjct: 33 GDSYMNWYQQKPGQPPKLLIFAASNLASGIPARLSGSGSGTDFTLNIQPVEEEDAATYY 91
>pdb|2ZCH|L Chain L, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
Length = 215
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 160 GRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYY 218
G +M WY K Q ++ AA + G ++LSG +G + + E A YY
Sbjct: 33 GDSYMNWYQQKPGQPPKLLIFAASNLASGIPARLSGSGSGTDFTLNIQPVEEEDAATYY 91
>pdb|2NYY|C Chain C, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Cr1
pdb|2NZ9|C Chain C, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
pdb|2NZ9|E Chain E, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
Length = 218
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 159 YGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYY 218
YG FM+WY K Q ++ A + G ++ SG +G + S E A YY
Sbjct: 32 YGHSFMQWYQQKPGQAPRLLIYRASNLEPGIPARFSGSGSGTDFTLTISSLEPEDFAVYY 91
>pdb|2GCY|A Chain A, Humanized Antibody C25 Fab Fragment
Length = 216
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 159 YGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYY 218
YG FM+WY K Q ++ A + G ++ SG +G + S E A YY
Sbjct: 32 YGHSFMQWYQQKPGQAPRLLIYRASNLEPGIPARFSGSGSGTDFTLTISSLEPEDFAVYY 91
>pdb|2VL5|B Chain B, Structure Of Anti-Collagen Type Ii Fab Ciic1
pdb|2VL5|D Chain D, Structure Of Anti-Collagen Type Ii Fab Ciic1
pdb|2Y5T|B Chain B, Crystal Structure Of The Pathogenic Autoantibody Ciic1 In
Complex With The Triple-Helical C1 Peptide
Length = 218
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 159 YGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYY 218
YG FMEWY K Q ++ A + G ++ SG + + A+ A YY
Sbjct: 32 YGNSFMEWYQQKPGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYY 91
>pdb|3FMG|L Chain L, Structure Of Rotavirus Outer Capsid Protein Vp7 Trimer In
Co A Neutralizing Fab
Length = 211
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 163 FMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYY 218
++ WY K + ++ AK + +G S+ SG +G H+ + S E YY
Sbjct: 32 YLAWYQQKQGKSPQLLVYKAKTLPEGVPSRFSGSGSGTHFSLKISSVQPEDFGTYY 87
>pdb|3F58|L Chain L, Igg1 Fab Fragment (58.2) Complex With 12-Residue Cyclic
Peptide (Including Residues 315-324 Of Hiv-1 Gp120 (Mn
Isolate); H315s Mutation
Length = 215
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 160 GRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYY 218
G FM WY K Q ++ AA + G ++ SG+ +G + E A YY
Sbjct: 33 GASFMNWYQQKPGQPPKLLIFAASTLESGIPARFSGRGSGTDFTLNIHPVEEEDAATYY 91
>pdb|1F58|L Chain L, Igg1 Fab Fragment (58.2) Complex With 24-Residue Peptide
(Residues 308-333 Of Hiv-1 Gp120 (Mn Isolate) With Ala
To Aib Substitution At Position 323
pdb|2F58|L Chain L, Igg1 Fab Fragment (58.2) Complex With 12-Residue Cyclic
Peptide (Including Residues 315-324 Of Hiv-1 Gp120) (Mn
Isolate)
Length = 216
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 160 GRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYY 218
G FM WY K Q ++ AA + G ++ SG+ +G + E A YY
Sbjct: 33 GASFMNWYQQKPGQPPKLLIFAASTLESGIPARFSGRGSGTDFTLNIHPVEEEDAATYY 91
>pdb|2QSC|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3-Fab F425-B4e8
In Complex With A V3-Peptide
Length = 215
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 163 FMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRY 222
++ WY K + ++ A + G S+ SG +G H+ + S E A Y+ +Y
Sbjct: 32 YLNWYQHKPGKAPKLLIYTASNLETGVPSRFSGGGSGTHFSFTITSLQPEDAATYFCQQY 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,498,789
Number of Sequences: 62578
Number of extensions: 565500
Number of successful extensions: 1518
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1397
Number of HSP's gapped (non-prelim): 38
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)