Query 017328
Match_columns 373
No_of_seqs 123 out of 180
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 07:36:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017328.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017328hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02803 beta-amylase 100.0 9E-163 2E-167 1236.3 34.7 373 1-373 176-548 (548)
2 PLN00197 beta-amylase; Provisi 100.0 2E-161 4E-166 1230.0 33.6 368 1-372 196-569 (573)
3 PLN02161 beta-amylase 100.0 5E-156 1E-160 1182.2 33.6 338 1-338 186-530 (531)
4 PLN02801 beta-amylase 100.0 7E-155 2E-159 1173.9 33.7 336 1-339 106-449 (517)
5 PLN02905 beta-amylase 100.0 6E-153 1E-157 1177.7 33.5 336 1-340 355-697 (702)
6 PLN02705 beta-amylase 100.0 3E-151 7E-156 1162.1 33.1 336 1-340 337-677 (681)
7 PF01373 Glyco_hydro_14: Glyco 100.0 8E-136 2E-140 1017.0 21.3 309 1-331 85-402 (402)
8 PF02449 Glyco_hydro_42: Beta- 95.2 0.22 4.7E-06 49.8 11.3 157 5-200 71-238 (374)
9 PF09184 PPP4R2: PPP4R2; Inte 53.9 3.4 7.3E-05 41.1 -0.7 30 308-337 96-126 (288)
10 PF01902 ATP_bind_4: ATP-bindi 49.5 31 0.00068 32.9 5.1 60 226-285 123-182 (218)
11 TIGR03679 arCOG00187 arCOG0018 45.2 46 0.00099 31.4 5.4 60 226-285 124-183 (218)
12 TIGR02884 spore_pdaA delta-lac 39.6 55 0.0012 30.7 5.0 82 227-318 142-223 (224)
13 TIGR03056 bchO_mg_che_rel puta 39.1 1.1E+02 0.0024 27.4 6.8 76 196-276 12-94 (278)
14 PF04854 DUF624: Protein of un 37.6 28 0.0006 27.1 2.3 23 45-67 37-59 (77)
15 TIGR00289 conserved hypothetic 33.7 84 0.0018 30.2 5.3 67 227-294 124-193 (222)
16 PRK04175 rpl7ae 50S ribosomal 33.2 1.1E+02 0.0023 26.7 5.4 45 223-278 32-76 (122)
17 PF03869 Arc: Arc-like DNA bin 32.9 33 0.00071 25.6 1.9 25 257-281 9-33 (50)
18 TIGR00290 MJ0570_dom MJ0570-re 31.4 96 0.0021 29.9 5.3 68 226-294 123-194 (223)
19 PF06336 Corona_5a: Coronaviru 31.2 32 0.0007 27.1 1.7 21 154-174 2-22 (65)
20 PF14871 GHL6: Hypothetical gl 30.6 1.2E+02 0.0027 26.7 5.4 51 228-280 4-62 (132)
21 cd04871 ACT_PSP_2 ACT domains 29.5 45 0.00097 26.9 2.3 35 242-280 48-82 (84)
22 TIGR03677 rpl7ae 50S ribosomal 29.2 1.4E+02 0.003 25.8 5.4 45 223-278 28-72 (117)
23 PF00070 Pyr_redox: Pyridine n 28.8 1.5E+02 0.0033 22.7 5.2 47 228-280 13-59 (80)
24 TIGR03006 pepcterm_polyde poly 27.1 83 0.0018 30.8 4.1 25 224-248 28-52 (265)
25 COG0623 FabI Enoyl-[acyl-carri 27.0 1.1E+02 0.0024 30.5 4.9 36 227-276 22-57 (259)
26 cd00739 DHPS DHPS subgroup of 24.8 1.9E+02 0.0041 28.2 6.1 64 210-277 92-165 (257)
27 TIGR00977 LeuA_rel 2-isopropyl 24.1 1.8E+02 0.004 31.3 6.4 73 190-277 97-169 (526)
28 PF01261 AP_endonuc_2: Xylose 23.8 2.4E+02 0.0053 24.4 6.1 58 225-282 28-91 (213)
29 PHA01513 mnt Mnt 23.5 59 0.0013 27.1 2.0 28 254-281 7-34 (82)
30 PF01261 AP_endonuc_2: Xylose 23.2 1.3E+02 0.0027 26.2 4.2 121 177-300 27-155 (213)
31 PRK07535 methyltetrahydrofolat 22.9 1.4E+02 0.0031 29.1 4.8 58 217-277 94-153 (261)
32 TIGR01496 DHPS dihydropteroate 22.5 1.8E+02 0.0039 28.3 5.4 63 211-277 92-163 (257)
33 TIGR03212 uraD_N-term-dom puta 22.1 72 0.0016 31.7 2.7 29 219-247 72-100 (297)
34 PRK03195 hypothetical protein; 21.3 2.1E+02 0.0046 27.0 5.5 60 32-104 121-181 (186)
35 cd01994 Alpha_ANH_like_IV This 21.2 1.8E+02 0.0039 27.0 5.0 58 226-284 126-183 (194)
36 PRK08318 dihydropyrimidine deh 21.1 3.9E+02 0.0085 27.4 7.8 85 174-280 152-258 (420)
37 PRK08417 dihydroorotase; Provi 20.9 1.8E+02 0.004 29.3 5.4 58 204-285 172-229 (386)
38 cd02930 DCR_FMN 2,4-dienoyl-Co 20.8 7.8E+02 0.017 24.7 9.7 132 176-339 191-323 (353)
39 cd02940 DHPD_FMN Dihydropyrimi 20.7 3.4E+02 0.0074 26.6 7.0 84 176-282 154-259 (299)
40 PRK07329 hypothetical protein; 20.7 3E+02 0.0064 26.2 6.4 34 50-86 51-84 (246)
41 PRK01018 50S ribosomal protein 20.3 2.6E+02 0.0056 23.4 5.3 43 224-278 19-61 (99)
No 1
>PLN02803 beta-amylase
Probab=100.00 E-value=9.5e-163 Score=1236.35 Aligned_cols=373 Identities=80% Similarity=1.394 Sum_probs=365.8
Q ss_pred CCccCCChhhHHhhhcCCCeeeecCCCCcCCcceecccCcccccCCCChhHhhHHHHHHHHHHHhhhhcCceeEEEeccc
Q 017328 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGDVVQEIQVGLG 80 (373)
Q Consensus 1 ~~~IPLP~WV~~~~~~dpDi~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~~I~eI~VGlG 80 (373)
+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||||+|||+|||++|++||++||+||+||||
T Consensus 176 ~~~IpLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~~I~eI~VGlG 255 (548)
T PLN02803 176 SCSIPLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLGGVIAEIQVGMG 255 (548)
T ss_pred cccccCCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhcCceEEEEeccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCCCcCCccceehhccHHHHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCCCCcCCCCccccccc
Q 017328 81 PCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYG 160 (373)
Q Consensus 81 P~GELRYPSYp~~~g~w~fPGiGEFQCYDk~m~~~L~~~A~~~G~~~WG~~gP~dag~yn~~P~~t~FF~~~g~~~s~YG 160 (373)
|||||||||||+++|+|+||||||||||||||+++||++|+++|||+||++||||||+||+.|++|+||+++|+|+|+||
T Consensus 256 P~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~aA~~~G~p~WG~~gP~dAg~Yn~~P~~t~FF~~~G~~~S~YG 335 (548)
T PLN02803 256 PCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASAEAIGKKDWGRGGPHDAGEYKQFPEETGFFRRDGTWNTEYG 335 (548)
T ss_pred cCccccCCCCcCcCCCccCCCccceeeccHHHHHHHHHHHHHhCCHhhccCCCCCcCcCCCCCCCCCCCCCCCCccchhh
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999899999999
Q ss_pred hhhHHhhhhHHHhHHHHHHHHHHHhhcCCCceeeeEecceeeccCCCCChhhhhccccCCCCCCChHHHHHHHHHcCcEE
Q 017328 161 RFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAIL 240 (373)
Q Consensus 161 ~FFL~WYs~~L~~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwy~t~sHaAElTAGyYNt~~rdGY~~Ia~mf~r~~~~l 240 (373)
||||+|||++||+||||||++|+.+|++++|+|++|||||||||+|+|||||||||||||++||||+||++|||||+|+|
T Consensus 336 ~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwY~t~SHaAElTAGyYNt~~rdGY~~Ia~mf~rh~~~l 415 (548)
T PLN02803 336 QFFLEWYSGKLLEHGDRILAAAEGIFQGTGAKLSGKVAGIHWHYRTRSHAAELTAGYYNTRNHDGYLPIARMFSKHGVVL 415 (548)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEEEeceeeeecCCCCchhhhccccccCCCcccHHHHHHHHHHcCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcccccccccccChhHHHHHHHhcCcCCCCCccceeeccCCcccC
Q 017328 241 NFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNGLGAFTYLRMHKKLF 320 (373)
Q Consensus 241 ~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~~~~~~~~FTylRm~~~lf 320 (373)
+||||||+|.+||++++|+||+||+||+++|+++||+|+|||||+|||.++|+||+++++++...++.+||||||++.||
T Consensus 416 ~FTClEM~D~eqp~~~~s~Pe~Lv~Qv~~aa~~~Gv~~aGENAL~~~d~~~~~qi~~~~~~~~~~~~~~FTyLRm~~~lf 495 (548)
T PLN02803 416 NFTCMEMRDGEQPEHANCSPEGLVRQVKMATRTAGTELAGENALERYDSAAFAQVVATSRSDSGNGLTAFTYLRMNKRLF 495 (548)
T ss_pred EEEecCcccCCCCccccCCHHHHHHHHHHHHHHcCCceeeeccccccCHHHHHHHHHhhcccccCceeeeEEecCChHHc
Confidence 99999999999999999999999999999999999999999999999999999999999875445699999999999999
Q ss_pred CccChHHHHHHHHHhcCCCCCCCCCCCccCCCcceeccccccccccccccccC
Q 017328 321 ESDNWRNLVEFVQRMSSEGRRPRLPEWDSTGSDLYVGFVKGKNGKKTKEAAVV 373 (373)
Q Consensus 321 ~~~n~~~F~~FV~~m~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (373)
+++||++|++|||+|+++...+++++++.++.+++|++|+...+...+|+|+|
T Consensus 496 ~~~n~~~F~~FVr~M~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 548 (548)
T PLN02803 496 EGDNWRQLVEFVKNMSEGGRNRRLPECDTEGSDLYVGFIKDKDAEKTTEAALV 548 (548)
T ss_pred ChhhHHHHHHHHHHhcCccccCccchhhccCccchhhhhcccchhhhhhhhcC
Confidence 99999999999999999888899999999999999999999999999999987
No 2
>PLN00197 beta-amylase; Provisional
Probab=100.00 E-value=1.9e-161 Score=1229.96 Aligned_cols=368 Identities=61% Similarity=1.107 Sum_probs=355.4
Q ss_pred CCccCCChhhHHhhhcCCCeeeecCCCCcCCcceecccCcccccCCCChhHhhHHHHHHHHHHHhhhhcCceeEEEeccc
Q 017328 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGDVVQEIQVGLG 80 (373)
Q Consensus 1 ~~~IPLP~WV~~~~~~dpDi~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~~I~eI~VGlG 80 (373)
+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||||+|||+|||++|++||+++|+||+||||
T Consensus 196 ~~~IpLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~eI~VGlG 275 (573)
T PLN00197 196 SCTIPLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLGDTIVEIQVGMG 275 (573)
T ss_pred cccccCCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhcCceeEEEeccC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCCCcCCccceehhccHHHHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCCCCcCC-CCcccccc
Q 017328 81 PCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFRR-DGTWNSEY 159 (373)
Q Consensus 81 P~GELRYPSYp~~~g~w~fPGiGEFQCYDk~m~~~L~~~A~~~G~~~WG~~gP~dag~yn~~P~~t~FF~~-~g~~~s~Y 159 (373)
|||||||||||+++|+|+||||||||||||||+++||++|+++|||+||++||||||+||+.|++|+||++ +|+|+|+|
T Consensus 276 P~GELRYPSYp~~~g~w~fPGiGEFQCYDkyml~~L~~aA~~~G~p~WG~~gP~dAg~Yn~~P~~t~FF~~~gG~w~S~Y 355 (573)
T PLN00197 276 PAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAEAAGKPEWGSTGPTDAGHYNNWPEDTRFFKKEGGGWNSPY 355 (573)
T ss_pred cCccccCCCCcCcCCCcCCCCccceeechHHHHHHHHHHHHHhCCHhhcCCCCCCccccCCCCCCCCCCCCCCCCccccc
Confidence 99999999999999899999999999999999999999999999999999999999999999999999995 78999999
Q ss_pred chhhHHhhhhHHHhHHHHHHHHHHHhhcCCCceeeeEecceeeccCCCCChhhhhccccCCCCCCChHHHHHHHHHcCcE
Q 017328 160 GRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAI 239 (373)
Q Consensus 160 G~FFL~WYs~~L~~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwy~t~sHaAElTAGyYNt~~rdGY~~Ia~mf~r~~~~ 239 (373)
|||||+|||++||+||||||++|+.+|++++|+|++|||||||||+|+|||||||||||||++||||+|||+|||||||+
T Consensus 356 G~FFL~WYS~~Ll~HGDrVL~~A~~~F~g~~v~l~aKVaGIHWwY~t~SHAAELTAGyYNt~~rDGY~~Ia~mfarh~~~ 435 (573)
T PLN00197 356 GEFFLSWYSQMLLDHGERILSSAKSIFENTGVKISVKIAGIHWHYGTRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAI 435 (573)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccceeecCCCCchHhhccccccCCCcccHHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcccccccccccChhHHHHHHHhcCcCC-----CCCccceeecc
Q 017328 240 LNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDA-----GNGLGAFTYLR 314 (373)
Q Consensus 240 l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~~-----~~~~~~FTylR 314 (373)
|+||||||+|.+||++++|+||+||+||+++|+++||+|+|||||+|||..+|+||+++++... ...+.+|||||
T Consensus 436 l~FTClEM~D~eqp~~a~s~PE~Lv~QV~~aA~~~Gv~vaGENAL~r~D~~~~~qI~~~~~~~~~~~~~~~~l~~FTYlR 515 (573)
T PLN00197 436 FNFTCIEMRDHEQPQDALCAPEKLVRQVALATREAEVPLAGENALPRYDDYAHEQILQASSLNIDGNSEDREMCAFTYLR 515 (573)
T ss_pred EEEEecCcccCCCCccccCCHHHHHHHHHHHHHHcCCcEeeeccccccChhHHHHHHHhcccccCCCcccCceeeEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999976532 13488999999
Q ss_pred CCcccCCccChHHHHHHHHHhcCCCCCCCCCCCccCCCcceecccccccccccccccc
Q 017328 315 MHKKLFESDNWRNLVEFVQRMSSEGRRPRLPEWDSTGSDLYVGFVKGKNGKKTKEAAV 372 (373)
Q Consensus 315 m~~~lf~~~n~~~F~~FV~~m~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (373)
|++.||+++||++|++|||+||++...++||+++++++++++ ++.+..++|+|+
T Consensus 516 m~~~lf~~~n~~~F~~FVr~M~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~a~ 569 (573)
T PLN00197 516 MNPHLFQPDNWRRFVAFVKKMKEGKDSHRCREQVEREAEHFV----HVTRPLVQEAAV 569 (573)
T ss_pred CChHHcChhhHHHHHHHHHHhcCCCCCCccchhcchhcccce----ecchhhHHHHHH
Confidence 999999999999999999999999999999999999999988 455667778775
No 3
>PLN02161 beta-amylase
Probab=100.00 E-value=5.3e-156 Score=1182.23 Aligned_cols=338 Identities=46% Similarity=0.904 Sum_probs=329.7
Q ss_pred CCccCCChhhHHhhhcCCCeeeecCCCCcCCcceecccCcccccCCCChhHhhHHHHHHHHHHHhhhhcCceeEEEeccc
Q 017328 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGDVVQEIQVGLG 80 (373)
Q Consensus 1 ~~~IPLP~WV~~~~~~dpDi~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~~I~eI~VGlG 80 (373)
+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||||+|||+|||++|++||+++|+||+||||
T Consensus 186 ~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~~~I~eI~VGlG 265 (531)
T PLN02161 186 KGGISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIGNVIEEISIGLG 265 (531)
T ss_pred ccCccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhcCceEEEEeccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCCCcCCccceehhccHHHHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCCCCcCC-CCcccccc
Q 017328 81 PCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFRR-DGTWNSEY 159 (373)
Q Consensus 81 P~GELRYPSYp~~~g~w~fPGiGEFQCYDk~m~~~L~~~A~~~G~~~WG~~gP~dag~yn~~P~~t~FF~~-~g~~~s~Y 159 (373)
|||||||||||+++|+|+||||||||||||||+++||++|+++|||+||++||||||.||+.|++|+||++ +|+|+|+|
T Consensus 266 P~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~~A~~~G~p~WG~~gP~dAg~Yn~~P~~t~FF~~~~gs~~S~Y 345 (531)
T PLN02161 266 PSGELRYPAHPSGDGRWKFPGIGEFQCHDKYMMEDLMAVASQEGKPQWGSRDPPNTGCYNSFPSGVPFFEEGNDSFLSDY 345 (531)
T ss_pred cCccccCCCCcCcCCCccCCCcceeeeccHHHHHHHHHHHHHhCCHhhccCCCCCCcccCCCCCCCCCCcCCCCCccccc
Confidence 99999999999999899999999999999999999999999999999999999999999999999999997 68899999
Q ss_pred chhhHHhhhhHHHhHHHHHHHHHHHhhcC------CCceeeeEecceeeccCCCCChhhhhccccCCCCCCChHHHHHHH
Q 017328 160 GRFFMEWYSGKLIQHGDRILAAAKEIFQG------TGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARML 233 (373)
Q Consensus 160 G~FFL~WYs~~L~~HgdrvL~~A~~~F~g------~~v~l~aKv~GIHWwy~t~sHaAElTAGyYNt~~rdGY~~Ia~mf 233 (373)
|||||+|||++||+||||||++|+.+|++ ++|+|+||||||||||+|+||||||||||||+++||||.|||+||
T Consensus 346 G~FFL~WYs~~Ll~HgdrvL~~A~~~F~~~~~~~~~~v~l~aKv~GIHWwY~t~SHaAElTAGyYN~~~rDGY~~Ia~m~ 425 (531)
T PLN02161 346 GRFFLEWYSGKLICHADAILAKAADVLRRRQESEKSSVMLVAKIGGIYWWYKTSSHPAELTAGYYNTALRDGYDPVASVL 425 (531)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcceEEEEeccccccCCCCCchhhhccccccCCcccchHHHHHHH
Confidence 99999999999999999999999999975 689999999999999999999999999999999999999999999
Q ss_pred HHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcccccccccccChhHHHHHHHhcCcCCCCCccceeec
Q 017328 234 AKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNGLGAFTYL 313 (373)
Q Consensus 234 ~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~~~~~~~~FTyl 313 (373)
|||+|+|+||||||+|.|||+++.|+||+||+||+++|+++||+|+|||||+|||..+|+||+++++..++..+.+||||
T Consensus 426 ~rh~~~l~FTClEM~D~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~~aGENAL~~~D~~~~~qi~~n~~~~~~~~l~~FTyl 505 (531)
T PLN02161 426 SRHGAALHIPCLDMADSETPEKYLCSPEGLRQQIHDVSKKWTIHVTGRNTSERFDEMGLRQIRENCVQPNGDTLRSFTFC 505 (531)
T ss_pred HHcCceEEEEeccccCCCCCccccCCHHHHHHHHHHHHHHcCCceeecccccccChhHHHHHHHHhcCCCCCceeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999865554568999999
Q ss_pred cCCcccCCccChHHHHHHHHHhcCC
Q 017328 314 RMHKKLFESDNWRNLVEFVQRMSSE 338 (373)
Q Consensus 314 Rm~~~lf~~~n~~~F~~FV~~m~~~ 338 (373)
||++.||+++||++|++|||+||++
T Consensus 506 Rm~~~lf~~~n~~~F~~FVr~M~~~ 530 (531)
T PLN02161 506 RMNEKIFRAENWNNFVPFIRQMSAD 530 (531)
T ss_pred cCChhhcChhhHHHHHHHHHHhhCC
Confidence 9999999999999999999999984
No 4
>PLN02801 beta-amylase
Probab=100.00 E-value=7.4e-155 Score=1173.94 Aligned_cols=336 Identities=52% Similarity=0.987 Sum_probs=326.6
Q ss_pred CCccCCChhhHHhhhcCCCeeeecCCCCcCCcceecccCcccccCCCChhHhhHHHHHHHHHHHhhhhcC-ceeEEEecc
Q 017328 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGD-VVQEIQVGL 79 (373)
Q Consensus 1 ~~~IPLP~WV~~~~~~dpDi~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~-~I~eI~VGl 79 (373)
+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||||+|||+|||++|++||++ +|+||+|||
T Consensus 106 ~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~~~I~eI~VGl 185 (517)
T PLN02801 106 AVNIPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFLEAGVIIDIEVGL 185 (517)
T ss_pred cccccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhccCCeeEEEEEcc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999985 999999999
Q ss_pred cCCccccCCCCCCCCCCCcCCccceehhccHHHHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCCCCcCCCCcccccc
Q 017328 80 GPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEY 159 (373)
Q Consensus 80 GP~GELRYPSYp~~~g~w~fPGiGEFQCYDk~m~~~L~~~A~~~G~~~WG~~gP~dag~yn~~P~~t~FF~~~g~~~s~Y 159 (373)
||||||||||||+++| |+||||||||||||||+++||++|+++|||+||+ |||||+||+.|++|+||+++|+|+|+|
T Consensus 186 GP~GELRYPSYp~~~g-W~fpGiGEFQCYDky~~~~l~~aA~~~G~p~Wg~--P~dag~Yn~~P~~t~FF~~~G~~~s~Y 262 (517)
T PLN02801 186 GPAGELRYPSYPETQG-WVFPGIGEFQCYDKYLKADFKEAATEAGHPEWEL--PDDAGEYNDTPEDTGFFKSNGTYLTEE 262 (517)
T ss_pred cccccccCCCCcCCCC-CCCCCcceeeeccHHHHHHHHHHHHhcCCcccCC--CCCCCcccCCCCCCCCCCCCCCccchh
Confidence 9999999999999886 9999999999999999999999999999999995 999999999999999999999999999
Q ss_pred chhhHHhhhhHHHhHHHHHHHHHHHhhcCCCceeeeEecceeeccCCCCChhhhhccccCCCCCCChHHHHHHHHHcCcE
Q 017328 160 GRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAI 239 (373)
Q Consensus 160 G~FFL~WYs~~L~~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwy~t~sHaAElTAGyYNt~~rdGY~~Ia~mf~r~~~~ 239 (373)
|||||+|||++||+||||||++|+.+|++++|+|+||||||||||+|+||||||||||||+++||||.|||+|||||+|+
T Consensus 263 G~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKvaGIHWwY~t~SHaAElTAGyYN~~~rDGY~pIa~m~~rh~~~ 342 (517)
T PLN02801 263 GKFFLTWYSNKLLLHGDQILDEANKAFLGCKVKLAAKVSGIHWWYKHHSHAAELTAGYYNLKGRDGYRPIARMLSRHYGI 342 (517)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeceeeeecCCCCchHhhccccccCCCccchHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcccccccccccChhHHHHHHHhcCcCCC-------CCccceee
Q 017328 240 LNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAG-------NGLGAFTY 312 (373)
Q Consensus 240 l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~~~-------~~~~~FTy 312 (373)
|+||||||+|++||++++|+||+||+||+++|+++||+|+|||||+|||..+|+||+++++++.. ..+++|||
T Consensus 343 l~FTClEM~D~eq~~~~~s~PE~Lv~QV~~aa~~~Gv~vaGENAL~~~D~~~y~qi~~~a~~~~~~~~g~~~~~~~~FTy 422 (517)
T PLN02801 343 LNFTCLEMRDTEQPAEALSAPQELVQQVLSGAWREGIEVAGENALSRYDRRGYNQILLNARPNGVNKDGKPKLRMFGVTY 422 (517)
T ss_pred EEEeecccccCCCCcccCCCHHHHHHHHHHHHHHcCCcEeeeccccccCHHHHHHHHHHhhhccCCcccccccceeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999876431 23889999
Q ss_pred ccCCcccCCccChHHHHHHHHHhcCCC
Q 017328 313 LRMHKKLFESDNWRNLVEFVQRMSSEG 339 (373)
Q Consensus 313 lRm~~~lf~~~n~~~F~~FV~~m~~~~ 339 (373)
|||++.||+++||++|++|||+||++.
T Consensus 423 LRm~~~lf~~~n~~~F~~FVr~M~~~~ 449 (517)
T PLN02801 423 LRLSDELLEETNFSLFKTFVRKMHADQ 449 (517)
T ss_pred ecCchHhcCcchHHHHHHHHHHhcccc
Confidence 999999999999999999999999753
No 5
>PLN02905 beta-amylase
Probab=100.00 E-value=5.7e-153 Score=1177.73 Aligned_cols=336 Identities=48% Similarity=0.893 Sum_probs=325.8
Q ss_pred CCccCCChhhHHhhhcCCCeeeecCCCCcCCcceecccCcccccCCCChhHhhHHHHHHHHHHHhhhhcC-ceeEEEecc
Q 017328 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGD-VVQEIQVGL 79 (373)
Q Consensus 1 ~~~IPLP~WV~~~~~~dpDi~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~-~I~eI~VGl 79 (373)
+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||||+|||+|||++|++||++ +|+||+|||
T Consensus 355 ~~~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGL 434 (702)
T PLN02905 355 DVCIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFEDGVISMVEVGL 434 (702)
T ss_pred cccccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEecc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999987 999999999
Q ss_pred cCCccccCCCCCCCCCCCcCCccceehhccHHHHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCCCCcCCCCcccccc
Q 017328 80 GPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEY 159 (373)
Q Consensus 80 GP~GELRYPSYp~~~g~w~fPGiGEFQCYDk~m~~~L~~~A~~~G~~~WG~~gP~dag~yn~~P~~t~FF~~~g~~~s~Y 159 (373)
||||||||||||+++| |+||||||||||||||+++||++|+++|||+||+ ||||||+||+.|++|+||+++|+|+|+|
T Consensus 435 GPaGELRYPSYp~s~G-W~fPGiGEFQCYDKymla~Lk~aA~a~GhpeWG~-gP~dAG~YN~~P~~TgFF~~~Gsw~S~Y 512 (702)
T PLN02905 435 GPCGELRYPSCPVKHG-WRYPGIGEFQCYDQYLLKSLRKAAEARGHLFWAR-GPDNTGSYNSQPHETGFFCDGGDYDGYY 512 (702)
T ss_pred CCCccccCCCCcCcCC-CCCCCcceeeeccHHHHHHHHHHHHHhCcHhhcc-CCCCCCccCCCCCCCCCCCCCCcccccc
Confidence 9999999999999886 9999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred chhhHHhhhhHHHhHHHHHHHHHHHhhcCCCceeeeEecceeeccCCCCChhhhhccccCCCCCCChHHHHHHHHHcCcE
Q 017328 160 GRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAI 239 (373)
Q Consensus 160 G~FFL~WYs~~L~~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwy~t~sHaAElTAGyYNt~~rdGY~~Ia~mf~r~~~~ 239 (373)
|||||+|||++||+||||||++|+.+|++ ++|+||||||||||+|+|||||||||||||++||||.|||+|||||+|+
T Consensus 513 GkFFLsWYS~~Ll~HGDrVLs~A~~vF~g--~~LaaKVaGIHWWY~t~SHAAELTAGYYNt~~rDGY~pIa~mfarh~~~ 590 (702)
T PLN02905 513 GRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIAAKLPGVHWWYKTASHAAELTAGFYNPCNRDGYAAIASMLKKHGAA 590 (702)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CeEEEEeccccccCCCCCchHhhccccccCCCcccHHHHHHHHHHcCCe
Confidence 99999999999999999999999999976 6999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccccCCCCCC---CCCCChHHHHHHHHHHHHHcCCcccccccccccChhHHHHHHHhcCcCCC---CCccceeec
Q 017328 240 LNFTCMEMRDREQPG---NANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAG---NGLGAFTYL 313 (373)
Q Consensus 240 l~fTClEM~d~e~p~---~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~~~---~~~~~FTyl 313 (373)
|+||||||+|.+||. +++|+||+||+||+++|+++||+|+|||||++||..+|+||+++++++++ ..+++||||
T Consensus 591 l~FTClEM~D~eqp~~~~~a~ssPE~LV~QV~~aA~~~GV~vaGENAL~r~D~~ay~qI~~na~~~~~~~~~~l~~FTYL 670 (702)
T PLN02905 591 LNFVCGEVQMLNRPDDFSEALGDPEGLAWQVLNAAWDVDTPVASENSLPCHDRVGYNKILENAKPLNDPDGRHFSSFTYL 670 (702)
T ss_pred EEEEecccccCCCCCccccccCCHHHHHHHHHHHHHHhCCceeccccccccCHHHHHHHHHHhhcccCCccCceeeeEEe
Confidence 999999999999986 78999999999999999999999999999999999999999999987642 248899999
Q ss_pred cCCcccCCccChHHHHHHHHHhcCCCC
Q 017328 314 RMHKKLFESDNWRNLVEFVQRMSSEGR 340 (373)
Q Consensus 314 Rm~~~lf~~~n~~~F~~FV~~m~~~~~ 340 (373)
||++.||+++||++|++|||+||++..
T Consensus 671 Rm~~~lf~~~nf~~F~~FVr~M~~~~~ 697 (702)
T PLN02905 671 RLSPLLMERHNFVEFERFVKRMHGEAV 697 (702)
T ss_pred cCchhhcCcchHHHHHHHHHHhccccc
Confidence 999999999999999999999998643
No 6
>PLN02705 beta-amylase
Probab=100.00 E-value=3.2e-151 Score=1162.14 Aligned_cols=336 Identities=40% Similarity=0.766 Sum_probs=325.3
Q ss_pred CCccCCChhhHHhhhcCCCeeeecCCCCcCCcceecccCcccccCCCChhHhhHHHHHHHHHHHhhhhcC-ceeEEEecc
Q 017328 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGD-VVQEIQVGL 79 (373)
Q Consensus 1 ~~~IPLP~WV~~~~~~dpDi~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~-~I~eI~VGl 79 (373)
+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||||+|||+|||++|++||++ +|+||+|||
T Consensus 337 ~~~IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGL 416 (681)
T PLN02705 337 NVMISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVEGLITAVEIGL 416 (681)
T ss_pred cccccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhccCCceeEEEecc
Confidence 5999999999999999999999999999999999999999999999999999999999999999999977 999999999
Q ss_pred cCCccccCCCCCCCCCCCcCCccceehhccHHHHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCCCCcCCCCcccccc
Q 017328 80 GPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEY 159 (373)
Q Consensus 80 GP~GELRYPSYp~~~g~w~fPGiGEFQCYDk~m~~~L~~~A~~~G~~~WG~~gP~dag~yn~~P~~t~FF~~~g~~~s~Y 159 (373)
||||||||||||++.| |+||||||||||||||+++||++|+++|||+||+ ||||||+||+.|++|+||+++|+|+|+|
T Consensus 417 GP~GELRYPSYp~~~g-W~fPGiGEFQCYDkymla~Lk~aA~a~GhpeWG~-gP~dAg~YN~~P~~tgFF~~~G~w~S~Y 494 (681)
T PLN02705 417 GASGELKYPSFPERMG-WIYPGIGEFQCYDKYSQQNLRKAAKSRGHSFWAR-GPDNAGQYNSRPHETGFFCERGDYDSYY 494 (681)
T ss_pred CCCccccCCCCcccCC-CCCCCcceeeeccHHHHHHHHHHHHHhCcHhhcc-CCCCccccCCCCCCCCCCCCCCCccccc
Confidence 9999999999999876 9999999999999999999999999999999998 8999999999999999999988999999
Q ss_pred chhhHHhhhhHHHhHHHHHHHHHHHhhcCCCceeeeEecceeeccCCCCChhhhhccccCCCCCCChHHHHHHHHHcCcE
Q 017328 160 GRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAI 239 (373)
Q Consensus 160 G~FFL~WYs~~L~~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwy~t~sHaAElTAGyYNt~~rdGY~~Ia~mf~r~~~~ 239 (373)
|||||+|||++||+||||||++|+.+|++ ++|+||||||||||+|+|||||||||||||++||||+|||+|||||+|+
T Consensus 495 GkFFLsWYS~~Ll~HGDrVLs~A~~vF~~--~~LsaKVaGIHWWY~t~SHAAELTAGYYNt~~rDGY~pIa~mfarh~~~ 572 (681)
T PLN02705 495 GRFFLHWYSQLLIDHADNVLSLANLAFEE--TKIIVKIPAVYWWYKTASHAAELTAGYYNPTNQDGYSPVFETLKKHSVT 572 (681)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCC--CeEEEEeccccccCCCCCchhhhccccccCCCcccHHHHHHHHHHcCce
Confidence 99999999999999999999999999975 7999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccccCCCC-CCCCCCChHHHHHHHHHHHHHcCCcccccccccccChhHHHHHHHhcCcCCC---CCccceeeccC
Q 017328 240 LNFTCMEMRDREQ-PGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAG---NGLGAFTYLRM 315 (373)
Q Consensus 240 l~fTClEM~d~e~-p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~~~---~~~~~FTylRm 315 (373)
|+|||+||+|.++ |.+++|+||+||+||+++|+++||+|+|||||++||.++|+||+++++++++ ..+.+||||||
T Consensus 573 l~FTC~eMe~~d~~~~~a~s~PE~LV~QV~~aA~~~Gv~vaGENAL~~~D~~ay~qI~~na~~~~~~~~~~~~~FTYlRm 652 (681)
T PLN02705 573 VKFVCSGLQMSPNENDEALADPEGLSWQVLNSAWDRGLTVAGENAITCYDREGCMRLIEIAKPRNHPDHYHFSFFVYQQP 652 (681)
T ss_pred EEEEeccccccCCCCCccCCCHHHHHHHHHHHHHHcCCceeecccccccCHHHHHHHHHHhcccCCCcccceeeeEEecC
Confidence 9999999999986 7889999999999999999999999999999999999999999999987542 24889999999
Q ss_pred CcccCCccChHHHHHHHHHhcCCCC
Q 017328 316 HKKLFESDNWRNLVEFVQRMSSEGR 340 (373)
Q Consensus 316 ~~~lf~~~n~~~F~~FV~~m~~~~~ 340 (373)
++.||+++||++|++|||+||++..
T Consensus 653 ~~~lf~~~n~~~F~~FVr~M~~~~~ 677 (681)
T PLN02705 653 SPLVQGTTCFPELDYFIKCMHGDIR 677 (681)
T ss_pred chHhcCcccHHHHHHHHHHhccccc
Confidence 9999999999999999999998643
No 7
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=100.00 E-value=8.2e-136 Score=1017.03 Aligned_cols=309 Identities=64% Similarity=1.163 Sum_probs=262.4
Q ss_pred CCccCCChhhHHhhhcCCCeeeecCCCCcCCcceecccCcccccCCCChhHhhHHHHHHHHHHHhhhhcCceeEEEeccc
Q 017328 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGDVVQEIQVGLG 80 (373)
Q Consensus 1 ~~~IPLP~WV~~~~~~dpDi~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~~I~eI~VGlG 80 (373)
+|+||||+||++++++| ||+||||+|+||+|||| ||++||| ||+|+|||+|||++|++|+ ++|+||+||||
T Consensus 85 ~~~IpLP~Wv~~~~~~~-di~ytd~~G~rn~E~lS------p~~~grt-~~~Y~dfm~sF~~~f~~~~-~~I~~I~vglG 155 (402)
T PF01373_consen 85 DCNIPLPSWVWEIGKKD-DIFYTDRSGNRNKEYLS------PVLDGRT-LQCYSDFMRSFRDNFSDYL-STITEIQVGLG 155 (402)
T ss_dssp SSEB-S-HHHHHHHHHS-GGEEE-TTS-EEEEEE-------CTBTTBC-HHHHHHHHHHHHHHCHHHH-TGEEEEEE--S
T ss_pred ccCCcCCHHHHhccccC-CcEEECCCCCcCcceee------cccCCch-HHHHHHHHHHHHHHHHHHH-hhheEEEeccC
Confidence 58999999999999999 99999999999999999 9999999 9999999999999999999 99999999999
Q ss_pred CCccccCCCCCCCCCCCcCCccceehhccHHHHHHHHHHHH------hccccccCCCCCCCCCCCCCCCCCCCCcCCCCc
Q 017328 81 PCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAE------ASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGT 154 (373)
Q Consensus 81 P~GELRYPSYp~~~g~w~fPGiGEFQCYDk~m~~~L~~~A~------~~G~~~WG~~gP~dag~yn~~P~~t~FF~~~g~ 154 (373)
|||||||||||+++| |+||||||||||||||+++||++|+ ..+||+||++||||+ ||+.|++|+||+++|+
T Consensus 156 P~GELRYPSy~~~~g-w~~pgiGeFQcYDk~~~~~l~~~a~~kyg~~~~~~~~Wg~~gp~~~--y~~~P~~t~fF~~~G~ 232 (402)
T PF01373_consen 156 PAGELRYPSYPESDG-WRFPGIGEFQCYDKYMLASLRAAAEAKYGSLGAGNPAWGLSGPHDA--YNSPPEDTGFFRDNGS 232 (402)
T ss_dssp GGGBSS-S-S-GGGT-B-TTS-----B-SHHHHHHHHHHHHHHTTCCTCTCTTHTS-SSSGG--TT-SGGGSTTTSTTCG
T ss_pred CcceeccCCCCCCCC-CcCCCcceeeeccHHHHHHHHHHHHHhhhhhccccccCCCCCCChh--hcCCCCCCCCcccCCc
Confidence 999999999999997 9999999999999999999999999 567999999999998 9999999999999999
Q ss_pred cccccchhhHHhhhhHHHhHHHHHHHHHHHhhcCC-CceeeeEecceeeccC--CCCChhhhhccccCCCCCCChHHHHH
Q 017328 155 WNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGT-GSKLSGKVAGIHWHYR--SRSHAAELTAGYYNTRYCDGYIPIAR 231 (373)
Q Consensus 155 ~~s~YG~FFL~WYs~~L~~HgdrvL~~A~~~F~g~-~v~l~aKv~GIHWwy~--t~sHaAElTAGyYNt~~rdGY~~Ia~ 231 (373)
|+|+||||||+|||++|++||||||++|+.+|+++ +|+|++|||||||||+ |+|||||||||||| |+||++
T Consensus 233 ~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~~v~l~aKv~GIHWwy~~pt~sHaAElTAGyyN------Y~~Ia~ 306 (402)
T PF01373_consen 233 WDSPYGKFFLSWYSGMLIDHGDRVLSLARSVFDGTFGVKLSAKVPGIHWWYNSPTRSHAAELTAGYYN------YSPIAR 306 (402)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHS-EEEEEEE---TTTTSTSTTTHHHHHHT-S-------SHHHHH
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecceeeccCCCCCCChHHHhccccC------HHHHHH
Confidence 99999999999999999999999999999999998 9999999999999999 88999999999999 999999
Q ss_pred HHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcccccccccccChhHHHHHHHhcCcCCCCCcccee
Q 017328 232 MLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNGLGAFT 311 (373)
Q Consensus 232 mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~~~~~~~~FT 311 (373)
|||||+|+|+||||||+|.++++ ..|+||+||+||+++|+++||+|+|||||+|||+.+|+||+++++.. ++.+||
T Consensus 307 mf~kh~~~l~fTClEM~d~~~~p-~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~~~---~~~gFT 382 (402)
T PF01373_consen 307 MFKKHGVTLNFTCLEMRDSEEQP-EYSSPEGLVRQVLNAAWRHGVPVAGENALPRYDNGAYNQILENAKGY---NYSGFT 382 (402)
T ss_dssp HHHTTT-EEEES-TT--GGSGSC-GGG-HHHHHHHHHHHHHHTT-EEEEE-SS---SHHHHHHHHHHHTHT---TTTSEE
T ss_pred HHHHcCcEEEEEeccccCCCCCC-CCCCHHHHHHHHHHHHHHcCCCEeeeeCccccCHHHHHHHHHHhhcc---CCCCeE
Confidence 99999999999999999994332 36799999999999999999999999999999999999999998763 577899
Q ss_pred eccCCcccCCccChHHHHHH
Q 017328 312 YLRMHKKLFESDNWRNLVEF 331 (373)
Q Consensus 312 ylRm~~~lf~~~n~~~F~~F 331 (373)
||||++.||+++||++|++|
T Consensus 383 yLRm~~~lf~~~n~~~F~~F 402 (402)
T PF01373_consen 383 YLRMGDVLFEGDNWSRFVRF 402 (402)
T ss_dssp ES-HCHHHHSHHHHHHHHHH
T ss_pred EEccChHhcCcccHHhccCC
Confidence 99999999999999999998
No 8
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=95.17 E-value=0.22 Score=49.80 Aligned_cols=157 Identities=19% Similarity=0.322 Sum_probs=92.9
Q ss_pred CCChhhHHhhhcCCCeeeecCCCCcCCcceecccCcccccCCCChhHhhHHHHHHHHHHHhhhhcC--ceeEEEecccCC
Q 017328 5 PLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGD--VVQEIQVGLGPC 82 (373)
Q Consensus 5 PLP~WV~~~~~~dpDi~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~--~I~eI~VGlGP~ 82 (373)
..|.|+. ++.|++..+|+.|.+. +.+.-.-.- .--..|+++++.|..++..-.++ .|..++|.=.|.
T Consensus 71 ~~P~Wl~---~~~Pe~~~~~~~g~~~----~~g~~~~~~----~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~ 139 (374)
T PF02449_consen 71 APPAWLY---DKYPEILPVDADGRRR----GFGSRQHYC----PNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPG 139 (374)
T ss_dssp TS-HHHH---CCSGCCC-B-TTTSBE----ECCCSTT-H----CCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTT
T ss_pred ccccchh---hhcccccccCCCCCcC----ccCCccccc----hhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccC
Confidence 5799996 5689999999999763 222111110 11357888888888888755444 788888854333
Q ss_pred ccccCCCCCCCCCCCcCCccceehhccHHHHHHHHHHHHh------ccccccCCCC-CCCCCCCCCC--CCCCCCcCCCC
Q 017328 83 GELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEA------SSNEDWGRSG-PHDSGQYNQF--PEDTGFFRRDG 153 (373)
Q Consensus 83 GELRYPSYp~~~g~w~fPGiGEFQCYDk~m~~~L~~~A~~------~G~~~WG~~g-P~dag~yn~~--P~~t~FF~~~g 153 (373)
+. +||++.+++.+++..++ .-|..||+.- .+.-.++++. |..+...
T Consensus 140 ~~---------------------~~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~---- 194 (374)
T PF02449_consen 140 YH---------------------RCYSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSP---- 194 (374)
T ss_dssp CT---------------------S--SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS-----
T ss_pred cC---------------------cCCChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCC----
Confidence 33 89999999999999986 3488999843 2222344544 4443311
Q ss_pred ccccccchhhHHhhhhHHHhHHHHHHHHHHHhhcCCCceeeeEecce
Q 017328 154 TWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGI 200 (373)
Q Consensus 154 ~~~s~YG~FFL~WYs~~L~~HgdrvL~~A~~~F~g~~v~l~aKv~GI 200 (373)
-+...-.+|...-+..+.+.-..+..+.+++- ++..|..++-+.
T Consensus 195 -~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~~--p~~~vt~n~~~~ 238 (374)
T PF02449_consen 195 -ENPAQWLDWYRFQSDRVAEFFRWQADIIREYD--PDHPVTTNFMGS 238 (374)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--TT-EEE-EE-TT
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCceEEeCcccc
Confidence 12223345555567788888888777777774 566788887766
No 9
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=53.88 E-value=3.4 Score=41.09 Aligned_cols=30 Identities=20% Similarity=0.494 Sum_probs=26.7
Q ss_pred cceeeccCCcccCCc-cChHHHHHHHHHhcC
Q 017328 308 GAFTYLRMHKKLFES-DNWRNLVEFVQRMSS 337 (373)
Q Consensus 308 ~~FTylRm~~~lf~~-~n~~~F~~FV~~m~~ 337 (373)
-=||++|||..++.| .++..+.+|+|.|..
T Consensus 96 ~PfTiqRlcEl~~~P~~~y~~~~k~~~alek 126 (288)
T PF09184_consen 96 PPFTIQRLCELLLDPRKHYKTLDKFLRALEK 126 (288)
T ss_pred CChhHHHHHHHHhChhhccccHHHHHHHHhe
Confidence 459999999999999 579999999999864
No 10
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=49.48 E-value=31 Score=32.92 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=38.1
Q ss_pred hHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCccccccccc
Q 017328 226 YIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALE 285 (373)
Q Consensus 226 Y~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~ 285 (373)
...+++.|-..|....++|+.-.--...---..--++++..+...+++.||..+|||.--
T Consensus 123 ~~~ll~e~i~~Gf~aiIv~V~~~~L~~~~LGr~l~~e~i~~L~~~~~~~gvdp~GE~GEf 182 (218)
T PF01902_consen 123 REELLREFIESGFEAIIVKVDADGLDESFLGRELDRELIEELPELNKKYGVDPCGEGGEF 182 (218)
T ss_dssp HHHHHHHHHHTT-EEEEEEEESTT--GGGTT-B--HHHHHHHHHHHHHH---TT-TTTTE
T ss_pred HHHHHHHHHHCCCeEEEEEEeccCCChHHCCCCccHHHHHHHHHHHhhcCccccCCCeeE
Confidence 667888888889999999987543211011123346899999999999999999999754
No 11
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=45.20 E-value=46 Score=31.36 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=43.6
Q ss_pred hHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCccccccccc
Q 017328 226 YIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALE 285 (373)
Q Consensus 226 Y~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~ 285 (373)
-..|++.+.+.|.....+|+.-.--....--..--+.++..+....++.||.++|||.--
T Consensus 124 ~~el~~~~~~~G~~~~i~~v~~~~l~~~~lG~~~~~~~~~~l~~l~~~~~~~~~GE~GE~ 183 (218)
T TIGR03679 124 QEEYLRELVERGFRFIIVSVSAYGLDESWLGREIDEKYIEKLKALNKRYGINPAGEGGEY 183 (218)
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCCChHHCCCccCHHHHHHHHHHHhhcCccccCCCcee
Confidence 467899999999999999986432111001123335788889999999999999999754
No 12
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=39.55 E-value=55 Score=30.67 Aligned_cols=82 Identities=10% Similarity=0.073 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcccccccccccChhHHHHHHHhcCcCCCCC
Q 017328 227 IPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNG 306 (373)
Q Consensus 227 ~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~~~~~ 306 (373)
..+.+.++++|..+.+.+++..|-... ...+|+..+++|+..++.-.|-|.=.+.. ....+..+|+..++.
T Consensus 142 ~~~~~~l~~~Gy~~v~w~v~~~Dw~~~--~~~~~~~~~~~v~~~~~~g~IiLlHd~~~--~t~~aL~~ii~~lk~----- 212 (224)
T TIGR02884 142 ERTLAYTKELGYYTVFWSLAFKDWKVD--EQPGWQYAYKQIMKKIHPGAILLLHAVSK--DNAEALDKIIKDLKE----- 212 (224)
T ss_pred HHHHHHHHHcCCcEEeccccCcccCCC--CCCCHHHHHHHHHhcCCCCcEEEEECCCC--CHHHHHHHHHHHHHH-----
Confidence 347888999999999999988876532 12467888888887655433444433211 134688899988774
Q ss_pred ccceeeccCCcc
Q 017328 307 LGAFTYLRMHKK 318 (373)
Q Consensus 307 ~~~FTylRm~~~ 318 (373)
.+|+|.++.+.
T Consensus 213 -~Gy~fvtl~el 223 (224)
T TIGR02884 213 -QGYTFKSLDDL 223 (224)
T ss_pred -CCCEEEEhHHc
Confidence 34777777653
No 13
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=39.06 E-value=1.1e+02 Score=27.39 Aligned_cols=76 Identities=14% Similarity=0.252 Sum_probs=47.2
Q ss_pred EecceeeccCCCCChhh----hhccccCCCCCCChHHHHHHHHHcCcEEEEeeccccCCCC---CCCCCCChHHHHHHHH
Q 017328 196 KVAGIHWHYRSRSHAAE----LTAGYYNTRYCDGYIPIARMLAKHGAILNFTCMEMRDREQ---PGNANCSPEGLVQQVK 268 (373)
Q Consensus 196 Kv~GIHWwy~t~sHaAE----lTAGyYNt~~rdGY~~Ia~mf~r~~~~l~fTClEM~d~e~---p~~~~s~Pe~Lv~Qv~ 268 (373)
++.|+||+|........ +.-|+ .....-|.++++.|++. +...+++++.... |....-+-+.+++.|.
T Consensus 12 ~~~~~~~~~~~~g~~~~~~vv~~hG~--~~~~~~~~~~~~~l~~~---~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l~ 86 (278)
T TIGR03056 12 TVGPFHWHVQDMGPTAGPLLLLLHGT--GASTHSWRDLMPPLARS---FRVVAPDLPGHGFTRAPFRFRFTLPSMAEDLS 86 (278)
T ss_pred eECCEEEEEEecCCCCCCeEEEEcCC--CCCHHHHHHHHHHHhhC---cEEEeecCCCCCCCCCccccCCCHHHHHHHHH
Confidence 78999999987543211 11132 22334488999999874 5566678875332 2222346788888888
Q ss_pred HHHHHcCC
Q 017328 269 MATRTAGV 276 (373)
Q Consensus 269 ~aa~~~Gv 276 (373)
+.....++
T Consensus 87 ~~i~~~~~ 94 (278)
T TIGR03056 87 ALCAAEGL 94 (278)
T ss_pred HHHHHcCC
Confidence 88776653
No 14
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=37.57 E-value=28 Score=27.12 Aligned_cols=23 Identities=22% Similarity=0.606 Sum_probs=18.8
Q ss_pred CCCChhHhhHHHHHHHHHHHhhh
Q 017328 45 RGRTPIQVYSDYMRSFRDRFRDY 67 (373)
Q Consensus 45 ~GRTpiq~Y~dfm~SF~~~F~~~ 67 (373)
++++.....+||.++||++|..-
T Consensus 37 ~~~~~~~~~~~f~~~fk~nf~~~ 59 (77)
T PF04854_consen 37 RDEEDSYLFRDFWRAFKQNFKQS 59 (77)
T ss_pred cCCccChHHHHHHHHHHHHHHHH
Confidence 45545688999999999999875
No 15
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=33.66 E-value=84 Score=30.21 Aligned_cols=67 Identities=10% Similarity=0.048 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCccccccccc---ccChhHHHH
Q 017328 227 IPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALE---RYDADAYAQ 294 (373)
Q Consensus 227 ~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~---~~d~~~~~q 294 (373)
..+++|+ .+|.+..++|+.-.--....--..--+.++..+....++.||.++|||.-- .+|.--|.+
T Consensus 124 ~~l~e~i-~~Gf~aiIv~v~~~gL~~~~LGr~id~~~~~~L~~l~~~~gid~~GEgGEyhT~V~d~PlF~~ 193 (222)
T TIGR00289 124 EKLMYEV-AEKFEVIIVSVSAMGLDESWLGRRIDKECIDDLKRLNEKYGIHLAFEGGEAETLVLDAPLFKK 193 (222)
T ss_pred HHHHHHH-HcCCeEEEEEEccCCCChHHcCCccCHHHHHHHHHHHhhcCccccCCCceEEEEEEeccccCc
Confidence 3456665 799999999987542110001123345788999999999999999999764 355444443
No 16
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=33.20 E-value=1.1e+02 Score=26.74 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=39.1
Q ss_pred CCChHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcc
Q 017328 223 CDGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVEL 278 (373)
Q Consensus 223 rdGY~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~ 278 (373)
.-|+..+.+.+++..+.|.|-+- .++|.+++..+...|++++|++
T Consensus 32 v~G~~~v~kaikkgkakLVilA~-----------D~s~~~i~~~~~~lc~~~~Vp~ 76 (122)
T PRK04175 32 KKGTNETTKAVERGIAKLVVIAE-----------DVDPEEIVAHLPLLCEEKKIPY 76 (122)
T ss_pred eEcHHHHHHHHHcCCccEEEEeC-----------CCChHHHHHHHHHHHHHcCCCE
Confidence 46799999999999999999864 4678888999999999999995
No 17
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=32.87 E-value=33 Score=25.58 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.4
Q ss_pred CCChHHHHHHHHHHHHHcCCccccc
Q 017328 257 NCSPEGLVQQVKMATRTAGVELAGE 281 (373)
Q Consensus 257 ~s~Pe~Lv~Qv~~aa~~~Gv~~~GE 281 (373)
.--|++|..+|...|...|-.++.|
T Consensus 9 lRlP~~l~~~lk~~A~~~gRS~NsE 33 (50)
T PF03869_consen 9 LRLPEELKEKLKERAEENGRSMNSE 33 (50)
T ss_dssp EECEHHHHHHHHHHHHHTTS-HHHH
T ss_pred eECCHHHHHHHHHHHHHhCCChHHH
Confidence 4569999999999999999998876
No 18
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=31.39 E-value=96 Score=29.86 Aligned_cols=68 Identities=10% Similarity=0.089 Sum_probs=48.2
Q ss_pred hHHHHHHHHHcCcEEEEeeccccCCCCCCCC-CCChHHHHHHHHHHHHHcCCccccccccc---ccChhHHHH
Q 017328 226 YIPIARMLAKHGAILNFTCMEMRDREQPGNA-NCSPEGLVQQVKMATRTAGVELAGENALE---RYDADAYAQ 294 (373)
Q Consensus 226 Y~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~-~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~---~~d~~~~~q 294 (373)
...+++.|-.+|+....+|+.-..-. +.-- ..-=++++..+.+..++.||.++|||.-- .+|.--|.+
T Consensus 123 ~~~ll~e~i~~G~~aiIv~v~a~gL~-~~~LGr~i~~e~i~~L~~~~~~~gvd~~GEgGEyhT~V~d~PlF~~ 194 (223)
T TIGR00290 123 PEKLMEEFVEEKFEARIIAVAAEGLD-ESWLGRRIDRKMIDELKKLNEKYGIHPAGEGGEFETLVLDAPIFKK 194 (223)
T ss_pred HHHHHHHHHHcCCeEEEEEEecCCCC-hHHcCCcccHHHHHHHHHHHhccCCCccCCCceEEEEEecCccccc
Confidence 56788888899999999998754221 1111 22335788888888899999999999864 355555543
No 19
>PF06336 Corona_5a: Coronavirus 5a protein; InterPro: IPR009404 This family consists of several Coronavirus 5a proteins. The function of this family is unknown [].
Probab=31.17 E-value=32 Score=27.11 Aligned_cols=21 Identities=29% Similarity=0.793 Sum_probs=18.1
Q ss_pred ccccccchhhHHhhhhHHHhH
Q 017328 154 TWNSEYGRFFMEWYSGKLIQH 174 (373)
Q Consensus 154 ~~~s~YG~FFL~WYs~~L~~H 174 (373)
.|-|.+||-|++-|-+.|+..
T Consensus 2 kwltsfgra~iscyksllltq 22 (65)
T PF06336_consen 2 KWLTSFGRAFISCYKSLLLTQ 22 (65)
T ss_pred chHHHHhHHHHHHHHHHHHHH
Confidence 489999999999999887653
No 20
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=30.61 E-value=1.2e+02 Score=26.68 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=32.8
Q ss_pred HHHHHHHHcCcEEEEe---ecc-c----cCCCCCCCCCCChHHHHHHHHHHHHHcCCcccc
Q 017328 228 PIARMLAKHGAILNFT---CME-M----RDREQPGNANCSPEGLVQQVKMATRTAGVELAG 280 (373)
Q Consensus 228 ~Ia~mf~r~~~~l~fT---ClE-M----~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~G 280 (373)
.++++|++-+++...- |-- + +.. ++.++.-. ..|+.++.++|++.||++-.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~-~~~hp~L~-~Dllge~v~a~h~~Girv~a 62 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKV-GPRHPGLK-RDLLGEQVEACHERGIRVPA 62 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCC-CcCCCCCC-cCHHHHHHHHHHHCCCEEEE
Confidence 5678888865543322 211 1 111 33333444 89999999999999999876
No 21
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=29.48 E-value=45 Score=26.90 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=27.3
Q ss_pred EeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcccc
Q 017328 242 FTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAG 280 (373)
Q Consensus 242 fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~G 280 (373)
-+|||..-...| ..++.|-.++...+++.||.++=
T Consensus 48 ~~~~e~~v~~~~----~~~~~lr~~L~~la~elgvDIav 82 (84)
T cd04871 48 KACVEFSVRGQP----ADLEALRAALLELASELNVDIAF 82 (84)
T ss_pred cEEEEEEEeCCC----CCHHHHHHHHHHHhcccCceEEE
Confidence 348887665322 58899999999999999998864
No 22
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=29.18 E-value=1.4e+02 Score=25.80 Aligned_cols=45 Identities=13% Similarity=0.204 Sum_probs=38.7
Q ss_pred CCChHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcc
Q 017328 223 CDGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVEL 278 (373)
Q Consensus 223 rdGY~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~ 278 (373)
.-|+..+.+.+++..+.|.+-+- .++|......+...|+..+|++
T Consensus 28 ~~G~~~v~kaikkgka~LVilA~-----------D~s~~~~~~~i~~lc~~~~Ip~ 72 (117)
T TIGR03677 28 KKGTNEVTKAVERGIAKLVVIAE-----------DVEPPEIVAHLPALCEEKGIPY 72 (117)
T ss_pred eEcHHHHHHHHHcCCccEEEEeC-----------CCCcHHHHHHHHHHHHHcCCCE
Confidence 36799999999999999988753 4667889999999999999985
No 23
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=28.84 E-value=1.5e+02 Score=22.71 Aligned_cols=47 Identities=23% Similarity=0.243 Sum_probs=37.2
Q ss_pred HHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcccc
Q 017328 228 PIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAG 280 (373)
Q Consensus 228 ~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~G 280 (373)
.+|.+|++.|+.+++ +++.+.-. ..-++.+...+....++.||.+-=
T Consensus 13 E~A~~l~~~g~~vtl--i~~~~~~~----~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 13 ELAEALAELGKEVTL--IERSDRLL----PGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp HHHHHHHHTTSEEEE--EESSSSSS----TTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHhCcEEEE--Eeccchhh----hhcCHHHHHHHHHHHHHCCCEEEe
Confidence 478899999988765 88887643 456788899999999999998753
No 24
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=27.07 E-value=83 Score=30.77 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.6
Q ss_pred CChHHHHHHHHHcCcEEEEeecccc
Q 017328 224 DGYIPIARMLAKHGAILNFTCMEMR 248 (373)
Q Consensus 224 dGY~~Ia~mf~r~~~~l~fTClEM~ 248 (373)
++...|+++|+++|+..+|=++...
T Consensus 28 ~nt~riL~lL~~~gikATFFv~g~~ 52 (265)
T TIGR03006 28 RNTDRILDLLDRHGVKATFFTLGWV 52 (265)
T ss_pred HhHHHHHHHHHHcCCcEEEEEeccc
Confidence 4688999999999999999987543
No 25
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=27.00 E-value=1.1e+02 Score=30.48 Aligned_cols=36 Identities=36% Similarity=0.422 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCC
Q 017328 227 IPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGV 276 (373)
Q Consensus 227 ~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv 276 (373)
--||+.|+++|+.|-||+.. |.|-.+|...|...|-
T Consensus 22 wGIAk~l~~~GAeL~fTy~~--------------e~l~krv~~la~~~~s 57 (259)
T COG0623 22 WGIAKALAEQGAELAFTYQG--------------ERLEKRVEELAEELGS 57 (259)
T ss_pred HHHHHHHHHcCCEEEEEecc--------------HHHHHHHHHHHhhccC
Confidence 36999999999999999853 6888999999888876
No 26
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=24.78 E-value=1.9e+02 Score=28.16 Aligned_cols=64 Identities=23% Similarity=0.183 Sum_probs=38.6
Q ss_pred hhhhhccccCCCCCCCh-HHHHHHHHHcCcEEEEeeccccCCCCCCCCC--CC----hHHH---HHHHHHHHHHcCCc
Q 017328 210 AAELTAGYYNTRYCDGY-IPIARMLAKHGAILNFTCMEMRDREQPGNAN--CS----PEGL---VQQVKMATRTAGVE 277 (373)
Q Consensus 210 aAElTAGyYNt~~rdGY-~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~--s~----Pe~L---v~Qv~~aa~~~Gv~ 277 (373)
|-|.-+.+.|.-....+ ..+++++++||+.+.. |.+...|.... .. .++. +.+.+..|.++||.
T Consensus 92 al~~G~~iINdisg~~~~~~~~~l~~~~~~~vV~----m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~ 165 (257)
T cd00739 92 ALEAGADIINDVSGGSDDPAMLEVAAEYGAPLVL----MHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVA 165 (257)
T ss_pred HHHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEE----ECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCC
Confidence 33445667886444334 7899999999999988 33333333211 11 2333 44556778888874
No 27
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=24.15 E-value=1.8e+02 Score=31.32 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=45.0
Q ss_pred CceeeeEecceeeccCCCCChhhhhccccCCCCCCChHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHH
Q 017328 190 GSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKM 269 (373)
Q Consensus 190 ~v~l~aKv~GIHWwy~t~sHaAElTAGyYNt~~rdGY~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~ 269 (373)
.|.|..+++-+|--++-..-..|...= ...+++..+++|..+.|.+....|. ....| +.|.++..
T Consensus 97 ~v~i~~~~Sd~h~~~~l~~s~ee~l~~---------~~~~v~~ak~~g~~V~~~~e~f~D~-----~r~~~-~~l~~~~~ 161 (526)
T TIGR00977 97 VVTIFGKSWDLHVLEALQTTLEENLAM---------IYDTVAYLKRQGDEVIYDAEHFFDG-----YKANP-EYALATLA 161 (526)
T ss_pred EEEEEeCCCHHHHHHHhCCCHHHHHHH---------HHHHHHHHHHcCCeEEEEeeeeeec-----ccCCH-HHHHHHHH
Confidence 477888888888777665444554433 4566777778888888877755332 12333 44445555
Q ss_pred HHHHcCCc
Q 017328 270 ATRTAGVE 277 (373)
Q Consensus 270 aa~~~Gv~ 277 (373)
++.+.|+.
T Consensus 162 ~a~~aGad 169 (526)
T TIGR00977 162 TAQQAGAD 169 (526)
T ss_pred HHHhCCCC
Confidence 55666654
No 28
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=23.78 E-value=2.4e+02 Score=24.38 Aligned_cols=58 Identities=7% Similarity=-0.016 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCCh------HHHHHHHHHHHHHcCCcccccc
Q 017328 225 GYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSP------EGLVQQVKMATRTAGVELAGEN 282 (373)
Q Consensus 225 GY~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~P------e~Lv~Qv~~aa~~~Gv~~~GEN 282 (373)
.-..+.+.++++|+.+..-+.-...........++. -..+..++.+|++.|++...=.
T Consensus 28 ~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~ 91 (213)
T PF01261_consen 28 EAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVH 91 (213)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeec
Confidence 356899999999999655443333222111123344 5678888999999998754444
No 29
>PHA01513 mnt Mnt
Probab=23.54 E-value=59 Score=27.12 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=23.6
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCccccc
Q 017328 254 GNANCSPEGLVQQVKMATRTAGVELAGE 281 (373)
Q Consensus 254 ~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GE 281 (373)
.-..--|+.|..+|..+|++.|+.++-|
T Consensus 7 qf~LRLP~eLk~rL~~aA~~nGRSmNae 34 (82)
T PHA01513 7 QFNLRLPYELKEKLKQRAKANGRSLNAE 34 (82)
T ss_pred ceeeeCCHHHHHHHHHHHHHhCCCHHHH
Confidence 3446789999999999999999988654
No 30
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=23.17 E-value=1.3e+02 Score=26.17 Aligned_cols=121 Identities=8% Similarity=0.046 Sum_probs=62.8
Q ss_pred HHHHHHHHhhcCCCceeeeEecceeeccCCCCChhhhhccccCCCCCCChHHHHHHHHHcCcEEEEeecc-ccCCCCCC-
Q 017328 177 RILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAILNFTCME-MRDREQPG- 254 (373)
Q Consensus 177 rvL~~A~~~F~g~~v~l~aKv~GIHWwy~t~sHaAElTAGyYNt~~rdGY~~Ia~mf~r~~~~l~fTClE-M~d~e~p~- 254 (373)
.-+...++.++..+++|.+=.+..+|++....+..+.-. .- ...+....++++.++.|+....+..- ........
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~--~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~ 103 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-RE--EALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDT 103 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HH--HHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSH
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hH--HHHHHHHHHHHHHHHhCCCceeecCcccccccCCCH
Confidence 345556666666677765555555555533221111100 00 00123677888888888776554422 10000000
Q ss_pred -CCCCChHHHHHHHHHHHHHcCCccccccccccc--Ch---hHHHHHHHhcC
Q 017328 255 -NANCSPEGLVQQVKMATRTAGVELAGENALERY--DA---DAYAQVLATSN 300 (373)
Q Consensus 255 -~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~--d~---~~~~qi~~~~~ 300 (373)
.....-..-++++...|+++||.+.=||-.... .. ..+.++++...
T Consensus 104 ~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~ 155 (213)
T PF01261_consen 104 EENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYRLLEEVD 155 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHHHHhhcC
Confidence 011111234567888899999999999988763 23 55666666554
No 31
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=22.89 E-value=1.4e+02 Score=29.10 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=39.1
Q ss_pred ccCCCCCCC--hHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCc
Q 017328 217 YYNTRYCDG--YIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVE 277 (373)
Q Consensus 217 yYNt~~rdG--Y~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~ 277 (373)
.+|.-+... +..++.+.+++|+.++..|++.+ ..|..... =-..+.++.+.|.++||+
T Consensus 94 iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~--g~P~t~~~-~~~~l~~~v~~a~~~GI~ 153 (261)
T PRK07535 94 LINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDT--GIPKDAED-RLAVAKELVEKADEYGIP 153 (261)
T ss_pred EEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCC--CCCCCHHH-HHHHHHHHHHHHHHcCCC
Confidence 567655433 77899999999999999987644 23321100 025566778888999984
No 32
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=22.47 E-value=1.8e+02 Score=28.26 Aligned_cols=63 Identities=22% Similarity=0.193 Sum_probs=37.1
Q ss_pred hhhhccccCCCCCCChHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCCh------H---HHHHHHHHHHHHcCCc
Q 017328 211 AELTAGYYNTRYCDGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSP------E---GLVQQVKMATRTAGVE 277 (373)
Q Consensus 211 AElTAGyYNt~~rdGY~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~P------e---~Lv~Qv~~aa~~~Gv~ 277 (373)
.+.-+.+.|.-.......++++++++|+.+.. |.+...|....+.| + ..+.+.++.|.++||.
T Consensus 92 l~~G~~iINsis~~~~~~~~~l~~~~~~~vV~----m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~ 163 (257)
T TIGR01496 92 LEAGADIINDVSGGQDPAMLEVAAEYGVPLVL----MHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVA 163 (257)
T ss_pred HHcCCCEEEECCCCCCchhHHHHHHcCCcEEE----EeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCC
Confidence 33444567754433366799999999999888 33333343221211 2 3345566678888884
No 33
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=22.11 E-value=72 Score=31.75 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=24.0
Q ss_pred CCCCCCChHHHHHHHHHcCcEEEEeeccc
Q 017328 219 NTRYCDGYIPIARMLAKHGAILNFTCMEM 247 (373)
Q Consensus 219 Nt~~rdGY~~Ia~mf~r~~~~l~fTClEM 247 (373)
.--.|-|.-.|+++|+|||+..+|-+.-.
T Consensus 72 ~YG~rvG~~RiLdlL~~~gv~aTffv~g~ 100 (297)
T TIGR03212 72 EYGSRAGFWRLLRLFTERGIPVTVFGVAM 100 (297)
T ss_pred hhcchhCHHHHHHHHHHcCCCEEEEeEHH
Confidence 33568999999999999999999976443
No 34
>PRK03195 hypothetical protein; Provisional
Probab=21.28 E-value=2.1e+02 Score=27.01 Aligned_cols=60 Identities=18% Similarity=0.413 Sum_probs=41.3
Q ss_pred cceecccCcccccCCCChhHhhHHHHHHHHHHHhhhhcC-ceeEEEecccCCccccCCCCCCCCCCCcCCccce
Q 017328 32 EYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGD-VVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGE 104 (373)
Q Consensus 32 E~LSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~-~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGE 104 (373)
.-|.+.||+-++ .+.-+=....-......++|. +|++|-| +||.+ ||. ..|.|+-||+|-
T Consensus 121 gvL~V~~~SsaW------AteL~~~k~~Ii~rLN~~lG~~vV~~I~i-~GP~~----psw--~~g~~~v~grGp 181 (186)
T PRK03195 121 GVLSVSAESTAW------ATQLRMMQAQLLAKIAAAVGDGVVTSLKI-TGPAA----PSW--RKGPRHIAGRGP 181 (186)
T ss_pred CEEEEEeCCHHH------HHHHHhhHHHHHHHHHHHhCccceeEEEE-eCCCC----CCC--CcCCCcCCCCCC
Confidence 567777777554 133333334566788888888 9999988 68886 666 455688888873
No 35
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=21.25 E-value=1.8e+02 Score=26.98 Aligned_cols=58 Identities=12% Similarity=0.048 Sum_probs=37.6
Q ss_pred hHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcccccccc
Q 017328 226 YIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENAL 284 (373)
Q Consensus 226 Y~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl 284 (373)
...+++.|-..|....++|+.-.--....--..-=+.++.. ....++.||.++|||.-
T Consensus 126 ~~~ll~e~~~~g~~~~iv~v~~~~L~~~~lG~~~~~~~~~~-~~~~~~~g~~~~GE~GE 183 (194)
T cd01994 126 QEELLREMIEAGFKAIIIKVAAEGLDESWLGREIDEMFIEL-LELNEKYGVDPCGEGGE 183 (194)
T ss_pred HHHHHHHHHHcCCeEEEEEeccCCCCHHHCCCCccHhhHHH-HHhhhhcCcCccCCCce
Confidence 46789999999999999998754211000001112444544 56667789999999963
No 36
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=21.06 E-value=3.9e+02 Score=27.38 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhcCCCceeeeEecceeeccCCCCChhhhhccccCCCCCCChHHHHHHHHHcCcEEEE--------eec
Q 017328 174 HGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAILNF--------TCM 245 (373)
Q Consensus 174 HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwy~t~sHaAElTAGyYNt~~rdGY~~Ia~mf~r~~~~l~f--------TCl 245 (373)
.-+++..+.+.+-....++|.+|++ + |.. -...|++++.++|++-.. ..+
T Consensus 152 ~~~~~~~i~~~v~~~~~~Pv~vKl~--------p-----------~~~---~~~~~a~~~~~~Gadgi~~~Nt~~~~~~i 209 (420)
T PRK08318 152 VPELVEMYTRWVKRGSRLPVIVKLT--------P-----------NIT---DIREPARAAKRGGADAVSLINTINSITGV 209 (420)
T ss_pred CHHHHHHHHHHHHhccCCcEEEEcC--------C-----------Ccc---cHHHHHHHHHHCCCCEEEEecccCccccc
Confidence 3344555555444445689999997 1 111 167899999999876544 233
Q ss_pred cccCC-CCC-------CCCCCChHHH---HHHHHHHHHHc---CCcccc
Q 017328 246 EMRDR-EQP-------GNANCSPEGL---VQQVKMATRTA---GVELAG 280 (373)
Q Consensus 246 EM~d~-e~p-------~~~~s~Pe~L---v~Qv~~aa~~~---Gv~~~G 280 (373)
+.... ..| ..-+|.|... +++|..+.+.. .|+|.|
T Consensus 210 d~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig 258 (420)
T PRK08318 210 DLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISG 258 (420)
T ss_pred cccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEe
Confidence 32221 111 1236776642 56676666654 677777
No 37
>PRK08417 dihydroorotase; Provisional
Probab=20.87 E-value=1.8e+02 Score=29.33 Aligned_cols=58 Identities=14% Similarity=0.110 Sum_probs=41.8
Q ss_pred cCCCCChhhhhccccCCCCCCChHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCccccccc
Q 017328 204 YRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENA 283 (373)
Q Consensus 204 y~t~sHaAElTAGyYNt~~rdGY~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENA 283 (373)
...++..||..|= ..++++..++|+.+++. ..|+++++ +++..|++.|+++..|=+
T Consensus 172 ~~~rp~~aE~~~v----------~~~~~la~~~~~~lhi~------------hvS~~~~~--~~i~~ak~~g~~vt~ev~ 227 (386)
T PRK08417 172 LPGIPSIAETKEV----------AKMKELAKFYKNKVLFD------------TLALPRSL--ELLDKFKSEGEKLLKEVS 227 (386)
T ss_pred CCCCCHHHHHHHH----------HHHHHHHHHhCCCEEEE------------eCCCHHHH--HHHHHHHHCCCCEEEEec
Confidence 3445666776662 56777778899999997 36888887 334468889999988765
Q ss_pred cc
Q 017328 284 LE 285 (373)
Q Consensus 284 l~ 285 (373)
.-
T Consensus 228 ph 229 (386)
T PRK08417 228 IH 229 (386)
T ss_pred hH
Confidence 44
No 38
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=20.84 E-value=7.8e+02 Score=24.69 Aligned_cols=132 Identities=14% Similarity=0.209 Sum_probs=69.7
Q ss_pred HHHHHHHHHhhcCCCceeeeEecceeeccCCCCChhhhhccccCCCCCCChHHHHHHHHHcCcEEEEeeccccCCCCCCC
Q 017328 176 DRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAILNFTCMEMRDREQPGN 255 (373)
Q Consensus 176 drvL~~A~~~F~g~~v~l~aKv~GIHWwy~t~sHaAElTAGyYNt~~rdGY~~Ia~mf~r~~~~l~fTClEM~d~e~p~~ 255 (373)
..|++..++.+ |..+.|+.|++..-+.-. |+ +.+-...|+++|.+.|+++.-.-..+.....+..
T Consensus 191 ~eiv~aIR~~v-G~d~~v~iRi~~~D~~~~----------g~----~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~ 255 (353)
T cd02930 191 VEIVRAVRAAV-GEDFIIIYRLSMLDLVEG----------GS----TWEEVVALAKALEAAGADILNTGIGWHEARVPTI 255 (353)
T ss_pred HHHHHHHHHHc-CCCceEEEEecccccCCC----------CC----CHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccc
Confidence 35667777777 457889999985432110 10 1122468999999999866533222211111111
Q ss_pred CCCChHH-HHHHHHHHHHHcCCcccccccccccChhHHHHHHHhcCcCCCCCccceeeccCCcccCCccChHHHHHHHHH
Q 017328 256 ANCSPEG-LVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNGLGAFTYLRMHKKLFESDNWRNLVEFVQR 334 (373)
Q Consensus 256 ~~s~Pe~-Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~~~~~~~~FTylRm~~~lf~~~n~~~F~~FV~~ 334 (373)
....|+. .+..+....+..+++|.+--- ..+.....++++.- ...++.|+.-++..-+| +++
T Consensus 256 ~~~~~~~~~~~~~~~ik~~v~iPVi~~G~--i~~~~~a~~~i~~g---------~~D~V~~gR~~l~dP~~------~~k 318 (353)
T cd02930 256 ATSVPRGAFAWATAKLKRAVDIPVIASNR--INTPEVAERLLADG---------DADMVSMARPFLADPDF------VAK 318 (353)
T ss_pred cccCCchhhHHHHHHHHHhCCCCEEEcCC--CCCHHHHHHHHHCC---------CCChhHhhHHHHHCccH------HHH
Confidence 1112322 222223333345777765322 24566666666542 25677888888876665 455
Q ss_pred hcCCC
Q 017328 335 MSSEG 339 (373)
Q Consensus 335 m~~~~ 339 (373)
..++.
T Consensus 319 ~~~g~ 323 (353)
T cd02930 319 AAAGR 323 (353)
T ss_pred HHhCC
Confidence 55544
No 39
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=20.74 E-value=3.4e+02 Score=26.55 Aligned_cols=84 Identities=15% Similarity=0.170 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhcCCCceeeeEecceeeccCCCCChhhhhccccCCCCCCChHHHHHHHHHcCcEEEE--------eeccc
Q 017328 176 DRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAILNF--------TCMEM 247 (373)
Q Consensus 176 drvL~~A~~~F~g~~v~l~aKv~GIHWwy~t~sHaAElTAGyYNt~~rdGY~~Ia~mf~r~~~~l~f--------TClEM 247 (373)
+.+.+..+.+-....++|.+|++- | -+-+..+++.+.++|++... ..++.
T Consensus 154 ~~~~~iv~~v~~~~~~Pv~vKl~~-------------------~---~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~ 211 (299)
T cd02940 154 ELVEEICRWVREAVKIPVIAKLTP-------------------N---ITDIREIARAAKEGGADGVSAINTVNSLMGVDL 211 (299)
T ss_pred HHHHHHHHHHHHhcCCCeEEECCC-------------------C---chhHHHHHHHHHHcCCCEEEEeccccccccccc
Confidence 444444444433356899999861 1 12378999999999987644 23333
Q ss_pred cCCCCC---------CCCCCChHHH---HHHHHHHHHHc--CCcccccc
Q 017328 248 RDREQP---------GNANCSPEGL---VQQVKMATRTA--GVELAGEN 282 (373)
Q Consensus 248 ~d~e~p---------~~~~s~Pe~L---v~Qv~~aa~~~--Gv~~~GEN 282 (373)
... .| ..-+|.|... +++|...++.. .++|.|--
T Consensus 212 ~~~-~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~G 259 (299)
T cd02940 212 DGT-PPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIG 259 (299)
T ss_pred ccC-CccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEEC
Confidence 221 11 1235665432 66677776766 68887733
No 40
>PRK07329 hypothetical protein; Provisional
Probab=20.68 E-value=3e+02 Score=26.19 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=22.2
Q ss_pred hHhhHHHHHHHHHHHhhhhcCceeEEEecccCCcccc
Q 017328 50 IQVYSDYMRSFRDRFRDYLGDVVQEIQVGLGPCGELR 86 (373)
Q Consensus 50 iq~Y~dfm~SF~~~F~~~~~~~I~eI~VGlGP~GELR 86 (373)
++.|.+-++.-|+.|.. .+...|+++.=|.+|..
T Consensus 51 ~~~Y~~ei~~lk~ky~~---~I~~GlE~~~~~~~~~~ 84 (246)
T PRK07329 51 YAKYSAEIAELNEKYGN---RIKKGIEIGYFAPREDD 84 (246)
T ss_pred HHHHHHHHHHHHHHhhh---hceEEEEeCcccccHHH
Confidence 56677777666776653 47777777765666543
No 41
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=20.31 E-value=2.6e+02 Score=23.36 Aligned_cols=43 Identities=12% Similarity=0.218 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcc
Q 017328 224 DGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVEL 278 (373)
Q Consensus 224 dGY~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~ 278 (373)
-|+..+.+.+++..+.|.|-+-+ .|+.....+...|+.++|++
T Consensus 19 ~G~~~v~kai~~gkaklViiA~D------------~~~~~~~~i~~~c~~~~Ip~ 61 (99)
T PRK01018 19 LGSKRTIKAIKLGKAKLVIVASN------------CPKDIKEDIEYYAKLSGIPV 61 (99)
T ss_pred EcHHHHHHHHHcCCceEEEEeCC------------CCHHHHHHHHHHHHHcCCCE
Confidence 57999999999999999998632 25789999999999999996
Done!