Query 017328
Match_columns 373
No_of_seqs 123 out of 180
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 12:39:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017328.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017328hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wdp_A Beta-amylase; (beta/alp 100.0 3E-154 1E-158 1167.2 29.8 337 1-340 102-446 (495)
2 1fa2_A Beta-amylase; TIM barre 100.0 8E-154 3E-158 1163.4 29.8 337 1-340 103-448 (498)
3 2xfr_A Beta-amylase; hydrolase 100.0 2E-153 7E-158 1166.6 31.3 337 1-340 100-444 (535)
4 1vem_A Beta-amylase; beta-alph 100.0 4.2E-89 1.4E-93 699.8 19.7 334 2-361 99-445 (516)
5 3tty_A Beta-GAL, beta-galactos 80.6 9.6 0.00033 40.1 11.1 160 5-199 84-255 (675)
6 3u7v_A Beta-galactosidase; str 76.5 2.8 9.7E-05 43.8 5.5 126 6-187 141-276 (552)
7 1kwg_A Beta-galactosidase; TIM 72.5 38 0.0013 35.0 12.8 160 4-199 74-244 (645)
8 2h9a_B CO dehydrogenase/acetyl 39.9 30 0.001 33.4 4.8 57 208-277 141-200 (310)
9 3rjz_A N-type ATP pyrophosphat 36.5 56 0.0019 30.2 6.0 60 226-285 128-187 (237)
10 3v7e_A Ribosome-associated pro 35.6 64 0.0022 24.7 5.3 44 224-279 14-57 (82)
11 4djd_D C/Fe-SP, corrinoid/iron 35.2 32 0.0011 33.5 4.2 56 209-277 149-207 (323)
12 2xzm_U Ribosomal protein L7AE 32.6 56 0.0019 27.3 4.9 45 224-279 27-71 (126)
13 2aif_A Ribosomal protein L7A; 31.8 78 0.0027 26.6 5.7 46 223-279 43-88 (135)
14 2lbw_A H/ACA ribonucleoprotein 30.9 62 0.0021 26.6 4.8 45 224-279 23-67 (121)
15 3j21_Z 50S ribosomal protein L 30.7 77 0.0026 24.9 5.1 43 224-278 18-60 (99)
16 3ues_A Alpha-1,3/4-fucosidase; 29.9 80 0.0027 32.1 6.3 55 226-280 64-130 (478)
17 3mwd_B ATP-citrate synthase; A 29.3 41 0.0014 32.7 3.9 54 223-289 90-145 (334)
18 1w41_A 50S ribosomal protein L 28.9 79 0.0027 24.9 4.9 44 224-279 19-62 (101)
19 2q02_A Putative cytoplasmic pr 25.6 1.9E+02 0.0063 25.0 7.2 70 226-299 87-161 (272)
20 1l8y_A Upstream binding factor 24.7 25 0.00085 28.4 1.2 61 47-121 6-66 (91)
21 3qoq_A Alginate and motility r 22.8 29 0.001 26.7 1.2 24 258-281 25-48 (69)
22 3tr9_A Dihydropteroate synthas 22.5 1.1E+02 0.0036 29.7 5.4 64 210-277 121-192 (314)
23 3d3a_A Beta-galactosidase; pro 22.5 1.7E+02 0.0059 30.6 7.4 17 108-124 168-184 (612)
24 1baz_A ARC repressor; transcri 22.4 44 0.0015 23.9 2.1 24 258-281 13-36 (53)
25 3cpq_A 50S ribosomal protein L 22.2 1.5E+02 0.005 23.8 5.4 43 224-278 24-66 (110)
26 1nla_A Transcriptional repress 21.6 43 0.0015 25.4 1.9 28 254-281 9-36 (64)
27 1i60_A IOLI protein; beta barr 21.4 97 0.0033 26.8 4.5 74 226-299 86-164 (278)
28 4acy_A Endo-alpha-mannosidase; 21.3 62 0.0021 31.9 3.5 56 216-279 95-150 (382)
29 2p0o_A Hypothetical protein DU 20.9 1.2E+02 0.004 30.1 5.5 48 228-280 21-68 (372)
30 1x7f_A Outer surface protein; 20.4 1.1E+02 0.0038 30.5 5.1 49 228-281 45-93 (385)
31 2ale_A SNU13, NHP2/L7AE family 20.3 90 0.0031 26.4 3.9 46 223-279 34-79 (134)
32 1aj0_A DHPS, dihydropteroate s 20.2 1.7E+02 0.0057 27.7 6.1 68 210-277 106-178 (282)
33 3vnd_A TSA, tryptophan synthas 20.1 1E+02 0.0034 28.9 4.5 50 216-278 102-151 (267)
No 1
>1wdp_A Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.27A {Glycine max} SCOP: c.1.8.1 PDB: 1bfn_A* 1q6c_A 1wdr_A* 1v3i_A* 1v3h_A* 1q6d_A* 1q6g_A* 1wdq_A* 1wds_A* 1q6e_A* 1q6f_A* 2dqx_A 1byb_A* 1bya_A* 1byc_A* 1byd_A* 1uko_A 1ukp_A 1btc_A*
Probab=100.00 E-value=3e-154 Score=1167.25 Aligned_cols=337 Identities=50% Similarity=0.973 Sum_probs=328.2
Q ss_pred CCccCCChhhHHhhhcCCCeeeecCCCCcCCcceecccCcccccCCCChhHhhHHHHHHHHHHHhhhh-cCceeEEEecc
Q 017328 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYL-GDVVQEIQVGL 79 (373)
Q Consensus 1 ~~~IPLP~WV~~~~~~dpDi~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~-~~~I~eI~VGl 79 (373)
+|+||||+||++++++||||+||||+|+||+||||||||++|||+||||||||+|||+|||++|++|| ++||+||+|||
T Consensus 102 ~~~IPLP~WV~~~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~Dfm~SFr~~F~~~~~~~~I~eI~VGl 181 (495)
T 1wdp_A 102 IVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGL 181 (495)
T ss_dssp SCCBCSCHHHHHHHHHCGGGEEECTTCCEEEEEECGGGTTCCCBTTBCHHHHHHHHHHHHHHHTHHHHHTTCEEEEEECC
T ss_pred cccccCCHHHHHhhccCCCcEEECCCCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHhccCCeeEEEEeCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999 88999999999
Q ss_pred cCCccccCCCCCCCCCCCcCCccceehhccHHHHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCCCCcCCCCcccccc
Q 017328 80 GPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEY 159 (373)
Q Consensus 80 GP~GELRYPSYp~~~g~w~fPGiGEFQCYDk~m~~~L~~~A~~~G~~~WG~~gP~dag~yn~~P~~t~FF~~~g~~~s~Y 159 (373)
||||||||||||+++| |+||||||||||||||+++||++|+++|||+||+ |||||+||+.|++|+||+++|+|+|+|
T Consensus 182 GP~GELRYPSYp~~~g-W~fPGiGEFQCYDky~~~~Lk~aA~~~G~~~WG~--P~dag~yn~~P~~t~FF~~~G~w~s~Y 258 (495)
T 1wdp_A 182 GPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVPESTGFFKSNGTYVTEK 258 (495)
T ss_dssp SGGGBSSCCCSCGGGT-CCTTCCCCCCCCSHHHHHHHHHHHHHTTCTTCCS--CSSSCCTTCCGGGSTTTSTTSGGGSHH
T ss_pred cccccccCCCCccccC-CCCCCcceeeechHHHHHHHHHHHHHhCchhhCC--CCCCCccCCCCCCCCCcCCCCcccchh
Confidence 9999999999999887 9999999999999999999999999999999998 999999999999999999999999999
Q ss_pred chhhHHhhhhHHHhHHHHHHHHHHHhhcCCCceeeeEecceeeccCCCCChhhhhccccCCCCCCChHHHHHHHHHcCcE
Q 017328 160 GRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAI 239 (373)
Q Consensus 160 G~FFL~WYs~~L~~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwy~t~sHaAElTAGyYNt~~rdGY~~Ia~mf~r~~~~ 239 (373)
|||||+|||++||+||||||++|+.+|++++|+|++|||||||||+|+|||||||||||||++||||+|||+|||||||+
T Consensus 259 GkFFL~WYs~~Ll~HgdrvL~~A~~~F~~~~v~l~~KV~GIHWwY~t~SHaAELTAGyYNt~~rdGY~~Ia~m~~rh~~~ 338 (495)
T 1wdp_A 259 GKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAI 338 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEECCCCCTTTTSTTCHHHHHHTCCCBTTBCSSHHHHHHHHTTTCE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEeceeeeccCCCCChHHhhcccccCCCCCchHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcccccccccccChhHHHHHHHhcCcCC-------CCCccceee
Q 017328 240 LNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDA-------GNGLGAFTY 312 (373)
Q Consensus 240 l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~~-------~~~~~~FTy 312 (373)
|+||||||+|.|||+++.|+||+||+||+++|+++||+|+|||||+|||..+|+||+++++... ..++++|||
T Consensus 339 l~fTC~EM~d~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~~aGENAL~~~d~~a~~qI~~~~~~~~~~~~~~~~~~~~~FTy 418 (495)
T 1wdp_A 339 LNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTY 418 (495)
T ss_dssp EEECCTTCCGGGSCGGGCCCHHHHHHHHHHHHHHTTCCEEEECSSCCCSHHHHHHHHHHHSTTCCCTTSSCSSCCSEEEE
T ss_pred EEEEecCCCcCCCCcccCCCHHHHHHHHHHHHHHhCCceeccccccccCHHHHHHHHHHhccccccccCCccCceeeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999987531 135899999
Q ss_pred ccCCcccCCccChHHHHHHHHHhcCCCC
Q 017328 313 LRMHKKLFESDNWRNLVEFVQRMSSEGR 340 (373)
Q Consensus 313 lRm~~~lf~~~n~~~F~~FV~~m~~~~~ 340 (373)
|||++.||+++||++|++|||+||++..
T Consensus 419 lRm~~~lf~~~n~~~F~~FVr~m~~~~~ 446 (495)
T 1wdp_A 419 LRLSDDLLQKSNFNIFKKFVLKMHADQD 446 (495)
T ss_dssp SCCCHHHHSHHHHHHHHHHHHHHTTTCC
T ss_pred ecCChhhCCchhHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999654
No 2
>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea batatas} SCOP: c.1.8.1
Probab=100.00 E-value=8.4e-154 Score=1163.42 Aligned_cols=337 Identities=50% Similarity=0.935 Sum_probs=328.0
Q ss_pred CCccCCChhhHHhhhcCCCeeeecCCCCcCCcceecccCcccccCCCChhHhhHHHHHHHHHHHhhhh-cCceeEEEecc
Q 017328 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYL-GDVVQEIQVGL 79 (373)
Q Consensus 1 ~~~IPLP~WV~~~~~~dpDi~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~-~~~I~eI~VGl 79 (373)
+|+||||+||++++++||||+||||+|+||+||||||||++|||+||||||||+|||+|||++|++|| ++||+||+|||
T Consensus 103 ~~~IPLP~WV~~~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~Dfm~SFr~~F~~~~~~~~I~eI~VGl 182 (498)
T 1fa2_A 103 AVFIPIPQWILQIGDKNPDIFYTNRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGDIVDIEVGC 182 (498)
T ss_dssp CCCBCSCHHHHHHTTTCGGGEEECTTCCEEEEEECGGGTTCEEETTEEHHHHHHHHHHHHHHHSHHHHHHTCEEEEEECC
T ss_pred cccccCCHHHHHhhccCCCceEECCCCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHhccCCeeEEEEeCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999 88999999999
Q ss_pred cCCccccCCCCCCCCCCCcCCccceehhccHHHHHHHHHHHHhccccccCCCCC-CCCCCCCCCCCCCCCcCCCCccccc
Q 017328 80 GPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASSNEDWGRSGP-HDSGQYNQFPEDTGFFRRDGTWNSE 158 (373)
Q Consensus 80 GP~GELRYPSYp~~~g~w~fPGiGEFQCYDk~m~~~L~~~A~~~G~~~WG~~gP-~dag~yn~~P~~t~FF~~~g~~~s~ 158 (373)
||||||||||||+++| |+||||||||||||||+++||++|+++|||+||+ | ||||+||+.|++|+||+++|+|+|+
T Consensus 183 GP~GELRYPSYp~~~g-W~fPGiGEFQCYDky~~~~Lk~aA~~~G~~~WG~--P~~dag~yn~~P~~t~FF~~~G~w~S~ 259 (498)
T 1fa2_A 183 GAAGELRYPSYPETQG-WVFPGIGEFQCYDKYMVADWKEAVKQAGNADWEM--PGKGAGTYNDTPDKTEFFRPNGTYKTD 259 (498)
T ss_dssp SGGGBSSCCCSCGGGT-CCTTCCCCCCCCSHHHHHHHHHHHHTTTCTTCCC--CCGGGCCTTCCGGGCSSSSTTCGGGSH
T ss_pred cccccccCCCCccccC-CCCCCcceeeechHHHHHHHHHHHHHhCchhhCC--CcccCCccCCCCCCCCCCCCCCcccch
Confidence 9999999999999887 9999999999999999999999999999999998 6 9999999999999999999999999
Q ss_pred cchhhHHhhhhHHHhHHHHHHHHHHHhhcCCCceeeeEecceeeccCCCCChhhhhccccCCCCCCChHHHHHHHHHcCc
Q 017328 159 YGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGA 238 (373)
Q Consensus 159 YG~FFL~WYs~~L~~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwy~t~sHaAElTAGyYNt~~rdGY~~Ia~mf~r~~~ 238 (373)
||||||+|||++|++||||||++|+.+|++++|+|++|||||||||+|+|||||||||||||++||||+|||+|||||+|
T Consensus 260 YGkFFL~WYs~~Ll~HgdrvL~~A~~~F~~~~v~l~~KV~GIHWwY~t~SHaAELTAGyYNt~~rdGY~~Ia~mf~rh~~ 339 (498)
T 1fa2_A 260 MGKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSGIHWWYNHVSHAAELTAGFYNVAGRDGYRPIARMLARHHA 339 (498)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSBCEEEEEECCCCTTTTSTTCHHHHHHTCCCBTTBCSSHHHHHHHHHTTC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEeceeeeccCCCCChHHhhcccccCCCCCchHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcccccccccccChhHHHHHHHhcCcCC-------CCCcccee
Q 017328 239 ILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDA-------GNGLGAFT 311 (373)
Q Consensus 239 ~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~~-------~~~~~~FT 311 (373)
+|+||||||+|.|||+++.|+||+||+||+++|+++||+|+|||||+|||..+|+||+++++... ..++++||
T Consensus 340 ~l~fTC~EM~d~eqp~~~~s~Pe~Lv~QV~~aa~~~Gv~~aGENAL~~~d~~a~~qI~~~a~~~~~~~~~~~~~~~~~FT 419 (498)
T 1fa2_A 340 TLNFTCLEMRDSEQPAEAKSAPQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLKLRPNGVNLNGPPKLKMSGLT 419 (498)
T ss_dssp EEEESCCSCCGGGSCGGGTCCHHHHHHHHHHHHHHTTCCEEEECSSCCCSHHHHHHHHHHHSTTCCCTTSSCSSCCSEEE
T ss_pred eEEEEecCCCcCCCCcccCCCHHHHHHHHHHHHHHhCCceeccccccccCHHHHHHHHHHhhhccccccCCCcCceeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999987531 13589999
Q ss_pred eccCCcccCCccChHHHHHHHHHhcCCCC
Q 017328 312 YLRMHKKLFESDNWRNLVEFVQRMSSEGR 340 (373)
Q Consensus 312 ylRm~~~lf~~~n~~~F~~FV~~m~~~~~ 340 (373)
||||++.||+++||++|++|||+||++..
T Consensus 420 ylRm~~~lf~~~n~~~F~~FVr~m~~~~~ 448 (498)
T 1fa2_A 420 YLRLSDDLLQTDNFELFKKFVKKMHADLD 448 (498)
T ss_dssp ESCCCHHHHSHHHHHHHHHHHHHHTTTCC
T ss_pred EecCChhhCCcccHHHHHHHHHHhcccCC
Confidence 99999999999999999999999998665
No 3
>2xfr_A Beta-amylase; hydrolase, carbohydrate metabolism, glycosyl hydrolase famil starch degradation, germination; 0.97A {Hordeum vulgare} PDB: 2xff_A 2xfy_A* 2xg9_A* 2xgb_A* 2xgi_A* 1b1y_A*
Probab=100.00 E-value=2.1e-153 Score=1166.62 Aligned_cols=337 Identities=52% Similarity=0.954 Sum_probs=328.5
Q ss_pred CCccCCChhhHHhhhcCCCeeeecCCCCcCCcceecccCcccccCCCChhHhhHHHHHHHHHHHhhhh-cCceeEEEecc
Q 017328 1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYL-GDVVQEIQVGL 79 (373)
Q Consensus 1 ~~~IPLP~WV~~~~~~dpDi~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~-~~~I~eI~VGl 79 (373)
+|+||||+||++++++||||+||||+|+||+||||||||++|||+||||||||+|||+|||++|++|| +++|+||+|||
T Consensus 100 ~~~IPLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~~~~~~I~eI~VGl 179 (535)
T 2xfr_A 100 AVNIPIPQWVRDVGTRDPDIFYTDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKEFLDAGVIVDIEVGL 179 (535)
T ss_dssp SCCBCSCHHHHHHHHHCGGGEEECTTCCEEEEEECGGGTTCCCBTTBCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cccccCCHHHHHhhhcCCCceEEcCCCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHhccCCeeEEEEeCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999 78999999999
Q ss_pred cCCccccCCCCCCCCCCCcCCccceehhccHHHHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCCCCcCCCCcccccc
Q 017328 80 GPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEY 159 (373)
Q Consensus 80 GP~GELRYPSYp~~~g~w~fPGiGEFQCYDk~m~~~L~~~A~~~G~~~WG~~gP~dag~yn~~P~~t~FF~~~g~~~s~Y 159 (373)
||||||||||||+++| |+||||||||||||||+++||++|+++|||+||+ |||||+||+.|++|+||+++|+|+|+|
T Consensus 180 GP~GELRYPSYp~~~g-W~fPGiGEFQCYDkyml~~Lk~aA~~~G~~~WG~--P~dag~yn~~P~~t~FF~~~G~w~S~Y 256 (535)
T 2xfr_A 180 GPAGEMRYPSYPQSHG-WSFPGIGEFICYDKYLQADFKAAAAAVGHPEWEF--PNDVGQYNDTPERTQFFRDNGTYLSEK 256 (535)
T ss_dssp SGGGCSSCCCCCBTTT-BCTTCCCCCCCCSHHHHHHHHHHHHHTTCTTCCC--CSCCCCTTCCGGGSTTTSTTCGGGSHH
T ss_pred cccccccCCCCccccC-CCCCCcceeccccHHHHHHHHHHHHHhCcHhhCC--CCCCCccCCCCCCCCCcCCCCcccchh
Confidence 9999999999999887 9999999999999999999999999999999998 999999999999999999989999999
Q ss_pred chhhHHhhhhHHHhHHHHHHHHHHHhhcCCCceeeeEecceeeccCCCCChhhhhccccCCCCCCChHHHHHHHHHcCcE
Q 017328 160 GRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAI 239 (373)
Q Consensus 160 G~FFL~WYs~~L~~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwy~t~sHaAElTAGyYNt~~rdGY~~Ia~mf~r~~~~ 239 (373)
|||||+|||++|++||||||++|+.+|++++|+|++|||||||||+|+|||||||||||||++||||+|||+|||||+|+
T Consensus 257 GkFFL~WYS~~Ll~HGdrvL~~A~~~F~~~~v~l~aKV~GIHWwY~t~SHaAELTAGyYNt~~rdGY~pIa~mf~rh~~~ 336 (535)
T 2xfr_A 257 GRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRAS 336 (535)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCEEEEECCCCCTTTTSTTCHHHHHHTCCCBTTBCTTHHHHHHHHTTTCE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEeceeeeccCCCCChHHhhcccccCCCCCchHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcccccccccccChhHHHHHHHhcCcCC----C---CCccceee
Q 017328 240 LNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDA----G---NGLGAFTY 312 (373)
Q Consensus 240 l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~~----~---~~~~~FTy 312 (373)
|+||||||+|.|||+++.|+||+||+||+++|+++||+|+|||||+|||..+|+||+++++.+. + .++++|||
T Consensus 337 l~FTClEM~d~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~vaGENAL~~~d~~a~~qI~~~a~~~~~~~~~~~~~~~~~FTy 416 (535)
T 2xfr_A 337 INFTCAEMRDSEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTY 416 (535)
T ss_dssp EEECCTTCCGGGSCGGGTCCHHHHHHHHHHHHHHTTCCEEEECSSCCCSHHHHHHHHHHHSTTCCCSSSCCSSCCSEEEE
T ss_pred EEEEecCCCcCCCCcccCCCHHHHHHHHHHHHHHhCCceeccccccccCHHHHHHHHHHhhhccccccCCCcCceeeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999988641 1 36999999
Q ss_pred ccCCcccCCccChHHHHHHHHHhcCCCC
Q 017328 313 LRMHKKLFESDNWRNLVEFVQRMSSEGR 340 (373)
Q Consensus 313 lRm~~~lf~~~n~~~F~~FV~~m~~~~~ 340 (373)
|||++.||+++||++|++|||+||++..
T Consensus 417 LRm~~~lf~~~n~~~F~~FVr~m~~~~~ 444 (535)
T 2xfr_A 417 LRLSNQLVEGQNYANFKTFVDRMHANLP 444 (535)
T ss_dssp SCCCTTTTSHHHHHHHHHHHHHHTTTCC
T ss_pred ecCChhhCCcccHHHHHHHHHHHhccCC
Confidence 9999999999999999999999998765
No 4
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A
Probab=100.00 E-value=4.2e-89 Score=699.79 Aligned_cols=334 Identities=26% Similarity=0.499 Sum_probs=295.2
Q ss_pred CccCCChhhHHhhhcCCCeeeecCCCCcCCcceecccCcccccCCCChhHhhHHHHHHHHHHHhhhhcCceeEEEecccC
Q 017328 2 YSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGDVVQEIQVGLGP 81 (373)
Q Consensus 2 ~~IPLP~WV~~~~~~dpDi~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~~I~eI~VGlGP 81 (373)
++++||.|+.+.. .+|||+++|++|+++++|+|++.|.. +++.|.+||+.+++.|.+.. ++|.||+|||||
T Consensus 99 ~~~~lP~WL~~~~-p~~di~~~d~~G~~~~~~~~~~~~~~-------~~~~y~~~~~~la~r~~~~~-~vI~eI~vglG~ 169 (516)
T 1vem_A 99 CNVPIPSWVWNQK-SDDSLYFKSETGTVNKETLNPLASDV-------IRKEYGELYTAFAAAMKPYK-DVIAKIYLSGGP 169 (516)
T ss_dssp CCBCCCGGGGGGC-SSSCSSEECTTCCEECSSCCTTCHHH-------HHHHHHHHHHHHHHHTGGGG-GGBCCEEECCSG
T ss_pred CCCCCCHHHHhcC-CccceeeECCCCCCCcccccccccCc-------cHHHHHHHHHHHHHHHccCC-CEEEEeeccccc
Confidence 4689999998863 23499999999999999999888775 47999999999999999985 799999999999
Q ss_pred CccccCCCCCCCCCCCcCCccceehhccHHHHHHHHHHHHhc------cccccCCCCCCCCCCCCCCCCCCCCcCCCCcc
Q 017328 82 CGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEAS------SNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTW 155 (373)
Q Consensus 82 ~GELRYPSYp~~~g~w~fPGiGEFQCYDk~m~~~L~~~A~~~------G~~~WG~~gP~dag~yn~~P~~t~FF~~~g~~ 155 (373)
+||||||||+..++ |.+||+|+|||||+++++.|++++++. .|++||+. +.+...++ .|+.+.+|.+.| |
T Consensus 170 ~GelryPs~qv~NE-~g~~g~~~~~~y~~~~~~~fr~~l~~~ygtl~~ln~aWg~~-~~~~~~i~-~P~~~~~~~~~g-w 245 (516)
T 1vem_A 170 AGELRYPSYTTSDG-TGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTK-LISELAIL-PPSDGEQFLMNG-Y 245 (516)
T ss_dssp GGBSSCCCCCTTTT-CCTTSCCCCCCCSHHHHHHHHHHHHHHHSSHHHHHHHHTCC-CSSGGGCC-SCSCHHHHHHTG-G
T ss_pred cccccccccccccC-cCCCCccchhccCHHHHHHHHHHHHHhcCCHHHHHHHhCCC-CCCHHHhC-CccccccccCCC-c
Confidence 99999999999886 999999999999999999999999974 69999985 66655554 477665555545 9
Q ss_pred ccccchhhHHhhhhHHHhHHHHHHHHHHHhhcC-CCceeeeEecceeeccCC--CCChhhhhccccCCCCCCChHHHHHH
Q 017328 156 NSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQG-TGSKLSGKVAGIHWHYRS--RSHAAELTAGYYNTRYCDGYIPIARM 232 (373)
Q Consensus 156 ~s~YG~FFL~WYs~~L~~HgdrvL~~A~~~F~g-~~v~l~aKv~GIHWwy~t--~sHaAElTAGyYNt~~rdGY~~Ia~m 232 (373)
.|.||+||+.|||++|++|+||||++|+++|++ ++|+|++|||||||||+| +|||||||||||| |.||++|
T Consensus 246 ~s~~~~df~~f~s~~l~~~~~~~l~~a~~~f~~~~~~~~~~kv~g~hw~y~~~~~~h~aeltag~yn------y~~i~~~ 319 (516)
T 1vem_A 246 LSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEKPAGYND------YSHLLDA 319 (516)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEEECCCCTTTTCSSSTTTTHHHHTCSC------HHHHHHH
T ss_pred hhhhcChHHHhchHHHHHHHHHHHHHHHHhcCCCcCceEEEEeCcceecCCCCCCCCchhhhccccc------hHHHHHH
Confidence 999999999999999999999999999999998 499999999999999999 5699999999999 9999999
Q ss_pred HHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcccccccccccChhHHHHHHHhcCcCCCCCccceee
Q 017328 233 LAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNGLGAFTY 312 (373)
Q Consensus 233 f~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~~~~~~~~FTy 312 (373)
||||||+|+||||||+|.|++++ +|+||+||+||+++|+++||+|+|||||+|||..+|+||+++++. .++++|||
T Consensus 320 ~~~~~~~~~~~c~em~~~~~~~~-~~~p~~l~~q~~~~~~~~g~~~~genal~~~~~~~~~~~~~~~~~---~~~~~ft~ 395 (516)
T 1vem_A 320 FKSAKLDVTFTCLEMTDKGSYPE-YSMPKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFN---YNFAGFTL 395 (516)
T ss_dssp HHHHTCEEEESCCSCCCCCCTTT-CCCHHHHHHHHHHHHHHHTCCEEEECSSCCCSHHHHHHHHHHHHH---TTCSEEEE
T ss_pred HHhcCceEEEeccCcccCCCCCC-CCCHHHHHHHHHHHHHHhCCceeeeecccccCHHHHHHHHHHhhh---cCccceEE
Confidence 99999999999999999997666 899999999999999999999999999999999999999999986 36999999
Q ss_pred ccCCcccCCccChHHHHHHHHHhcCCCCC-C-CCCC-CccCCCcce-eccccc
Q 017328 313 LRMHKKLFESDNWRNLVEFVQRMSSEGRR-P-RLPE-WDSTGSDLY-VGFVKG 361 (373)
Q Consensus 313 lRm~~~lf~~~n~~~F~~FV~~m~~~~~~-~-~l~~-~~~~~~~~~-~~~~~~ 361 (373)
|||++.+|+++||+.|++||+. .... . .+.. ....|++++ +|++.+
T Consensus 396 lr~~~vl~~~gn~~~F~~~Vt~---~~v~V~F~v~~~~t~~Ge~v~vvGs~~e 445 (516)
T 1vem_A 396 LRYQDVMYNNSLMGKFKDLLGV---TPVMQTIVVKNVPTTIGDTVYITGNRAE 445 (516)
T ss_dssp SCHHHHHTCHHHHHHHHHHTSC---CEEEEEEEEESCCCCTTCEEEEEESSGG
T ss_pred Eeecchhccccchhhhhccccc---CccceEEEEeeccCCCCCEEEEEeChhh
Confidence 9999999999999999988762 2221 1 2222 234677888 888876
No 5
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*
Probab=80.58 E-value=9.6 Score=40.06 Aligned_cols=160 Identities=16% Similarity=0.256 Sum_probs=91.5
Q ss_pred CCChhhHHhhhcCCCeeeecCCCCcCCcceecccCcccccCCCChhHhhHHHHHHHHHHHhhhhcC--ceeEEEecccCC
Q 017328 5 PLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGD--VVQEIQVGLGPC 82 (373)
Q Consensus 5 PLP~WV~~~~~~dpDi~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~--~I~eI~VGlGP~ 82 (373)
.+|.|+. ++.|+++.+|+.|++.. ++.-.. ..=-. ..|.+++..+..+...-.++ .|..++|+==|.
T Consensus 84 ~~P~Wl~---~~~Pe~l~~d~~G~~~~----~g~r~~--~~~~~--p~~~~~~~~~~~~l~~ry~~~p~Vi~w~v~NE~g 152 (675)
T 3tty_A 84 AHPAWMA---KKYPDVLRVDYEGRKRK----FGGRHN--SCPNS--PTYRKYAKILAGKLAERYKDHPQIVMWHVSNEYG 152 (675)
T ss_dssp SCCHHHH---HHCGGGBCBCTTSCBCC----SCSSSC--BCTTC--HHHHHHHHHHHHHHHHHTTTCTTEEEEECSSSCC
T ss_pred CCChhhh---hcCCceeeecCCCcCcc----cCCccC--CCCCC--HHHHHHHHHHHHHHHHHhCCCCcEEEEEEccccC
Confidence 4799995 46889999999997541 110000 00012 45777777665555443344 777777753221
Q ss_pred ccccCCCCCCCCCCCcCCccceehhccHHHHHHHHHHHHh------ccccccCCCC-CCCCCCCCCC--CCCCC-CcCCC
Q 017328 83 GELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEA------SSNEDWGRSG-PHDSGQYNQF--PEDTG-FFRRD 152 (373)
Q Consensus 83 GELRYPSYp~~~g~w~fPGiGEFQCYDk~m~~~L~~~A~~------~G~~~WG~~g-P~dag~yn~~--P~~t~-FF~~~ 152 (373)
+ .||....++.+++..++ .-|.+||+.- .+.-.++.++ |..++ =|...
T Consensus 153 ~----------------------~~y~~~~~~~Fr~wLk~kY~ti~~LN~aWgt~fWs~~y~~w~ei~~P~~~~~~~~~~ 210 (675)
T 3tty_A 153 G----------------------YCYCDNCEKQFRVWLKERYGTLEALNKAWNTSFWSHTFYDWDEIVAPNALSEEWSGN 210 (675)
T ss_dssp C----------------------CCCSHHHHHHHHHHHHHHHSSHHHHHHHTTTTGGGCCCSSGGGCCCCSTTTTEETTT
T ss_pred C----------------------CcCCHHHHHHHHHHHHHHhcCHHHHHHHhCcccccCccCCHHHhcCCcccccccccc
Confidence 1 29999999999998774 3488888621 1222234443 33222 01000
Q ss_pred CccccccchhhHHhhhhHHHhHHHHHHHHHHHhhcCCCceeeeEecc
Q 017328 153 GTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAG 199 (373)
Q Consensus 153 g~~~s~YG~FFL~WYs~~L~~HgdrvL~~A~~~F~g~~v~l~aKv~G 199 (373)
..-+-..-.+|-.+-+.++++.-..+.++.+++- +.++|..+.-|
T Consensus 211 ~~~~p~~~lD~~rF~~~~~~~~~~~~~d~iR~~~--P~~pvt~N~~~ 255 (675)
T 3tty_A 211 RTNFQGISLDYRRFQSDSLLECFKMERDELKRWT--PDIPVTTNLMG 255 (675)
T ss_dssp EESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTSCEECEECT
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCEEEcccc
Confidence 0011112245555568999999999999988864 45556666543
No 6
>3u7v_A Beta-galactosidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel, glyco_hydro_42; HET: MSE; 1.80A {Caulobacter crescentus}
Probab=76.52 E-value=2.8 Score=43.80 Aligned_cols=126 Identities=22% Similarity=0.462 Sum_probs=78.9
Q ss_pred CChhhHHhhhcCCCeeeecCCCCcCCcceecccCcccccCCCChhHhhHHHHHHHHHHHhhhhcC--ceeEEEecccCCc
Q 017328 6 LPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGD--VVQEIQVGLGPCG 83 (373)
Q Consensus 6 LP~WV~~~~~~dpDi~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~--~I~eI~VGlGP~G 83 (373)
+|.|+.+..+..|++ .|..|++-. .+| |. ...=++.++.+++.+-.......++ .|.-+||.=
T Consensus 141 ~P~WL~~d~~~~P~v--rt~dG~~~~-~~s------p~--~p~yl~a~r~~~~~l~~~La~r~~~~p~VI~wQIeN---- 205 (552)
T 3u7v_A 141 APEWVKLDDKRFPRL--IKDDGERSY-SMS------PL--AKSTLDADRKAFVALMTHLKAKDAAQKTVIMVQVEN---- 205 (552)
T ss_dssp SCHHHHTCTTTSCEE--ECTTSCEEE-EEC------TT--CHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEEEE----
T ss_pred CCchhhcCcccCcee--ECCCCcEee-cCC------CC--cHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc----
Confidence 899998665566666 688887653 344 21 0001245566666666666666543 888999842
Q ss_pred cccCCCCCCCCCCCcCCccceehhccHHHHHHHHHHHHh----ccccccCCCCCCCCCCCCCCCCCCCCcCCCCcccccc
Q 017328 84 ELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEA----SSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEY 159 (373)
Q Consensus 84 ELRYPSYp~~~g~w~fPGiGEFQCYDk~m~~~L~~~A~~----~G~~~WG~~gP~dag~yn~~P~~t~FF~~~g~~~s~Y 159 (373)
| |-+| |.-.||...+++.|++.-++ .-|..|| +|...|
T Consensus 206 E--yG~~------------g~~~~Y~~~~~~aFR~WL~~rtld~LN~aWG------------------------TWs~~y 247 (552)
T 3u7v_A 206 E--TGTY------------GSVRDFGPAAQKVFNGPAPATLVKAVGAKPG------------------------TWSQAF 247 (552)
T ss_dssp S--CSBS------------SCSSCCSHHHHHHHHSBCCHHHHHHHTCCSS------------------------BHHHHH
T ss_pred c--CCCC------------CCcchhhHHHHHHHHHHhhhccHHHHhhhhC------------------------chhhhc
Confidence 2 2222 23469999999998875443 3366664 366666
Q ss_pred c----hhhHHhhhhHHHhHHHHHHHHHHHhhc
Q 017328 160 G----RFFMEWYSGKLIQHGDRILAAAKEIFQ 187 (373)
Q Consensus 160 G----~FFL~WYs~~L~~HgdrvL~~A~~~F~ 187 (373)
| ..|..|+-..-|+ +|..+.+++.+
T Consensus 248 ~~~~~e~F~a~~~a~yv~---~va~agk~~y~ 276 (552)
T 3u7v_A 248 GKDADEFFHAWHIGRFVD---QVAAGGKAVYP 276 (552)
T ss_dssp GGGHHHHHHHHHHHHHHH---HHHHHHHTTCC
T ss_pred CCCchHHHHHHHHHHHHH---HHHHhhhhhcC
Confidence 6 6799998766554 45566777764
No 7
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*
Probab=72.52 E-value=38 Score=34.96 Aligned_cols=160 Identities=18% Similarity=0.278 Sum_probs=96.5
Q ss_pred cCCChhhHHhhhcCCCeeeecCCCCcCCcceecccCcccccCCCChhHhhHHHHHHHHHHHhhhhcC--ceeEEEecccC
Q 017328 4 IPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGD--VVQEIQVGLGP 81 (373)
Q Consensus 4 IPLP~WV~~~~~~dpDi~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~--~I~eI~VGlGP 81 (373)
..+|.|+.+ +.|++...|++|++.. ++.-. ...=. -..|.++++.+-.++..-+++ .|..++|.=
T Consensus 74 ~~~P~Wl~~---~~P~~~~~~~~G~~~~----~g~r~--~~~~~--~p~~~~~~~~~~~~l~~ry~~~p~V~~w~i~N-- 140 (645)
T 1kwg_A 74 ATPPKWLVD---RYPEILPVDREGRRRR----FGGRR--HYCFS--SPVYREEARRIVTLLAERYGGLEAVAGFQTDN-- 140 (645)
T ss_dssp TSCCHHHHH---HCGGGSCBCTTSCBCC----SSSSC--CCCTT--CHHHHHHHHHHHHHHHHHHTTCTTEEEEECSS--
T ss_pred CCCChhHhh---cCCceeeeCCCCcCcc----cCccc--cCCCC--CHHHHHHHHHHHHHHHHHhCCCCcEEEEEecC--
Confidence 357999864 5789999999987642 11100 00001 146888888887776654444 888888763
Q ss_pred CccccCCCCCCCCCCCcCCccceehhccHHHHHHHHHHHHhc------cccccCCCC-CCCCCCCCCC--CCCCCCcCCC
Q 017328 82 CGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEAS------SNEDWGRSG-PHDSGQYNQF--PEDTGFFRRD 152 (373)
Q Consensus 82 ~GELRYPSYp~~~g~w~fPGiGEFQCYDk~m~~~L~~~A~~~------G~~~WG~~g-P~dag~yn~~--P~~t~FF~~~ 152 (373)
|..++. ...||+...++.+++..++. -|..||+.- .+.-..++++ |..+.-
T Consensus 141 --E~~~~~--------------~~~~y~~~~~~~f~~wL~~~y~~i~~ln~awgt~fws~~~~~w~~i~~P~~~~~---- 200 (645)
T 1kwg_A 141 --EYGCHD--------------TVRCYCPRCQEAFRGWLEARYGTIEALNEAWGTAFWSQRYRSFAEVELPHLTVA---- 200 (645)
T ss_dssp --STTTTT--------------TSCCCSHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGGCCCSSGGGCCCSCSCSS----
T ss_pred --cCCCCC--------------CCCcCCHHHHHHHHHHHHHHhcCHHHHHHHhCccccccccCcHhhcCCCCccCC----
Confidence 322221 13599999999888876642 367787631 1222334444 332211
Q ss_pred CccccccchhhHHhhhhHHHhHHHHHHHHHHHhhcCCCceeeeEecc
Q 017328 153 GTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAG 199 (373)
Q Consensus 153 g~~~s~YG~FFL~WYs~~L~~HgdrvL~~A~~~F~g~~v~l~aKv~G 199 (373)
.-+...-.+|..|-+..+...-.++.++.+++- +++++...+.|
T Consensus 201 -~~~~~~~~d~~~F~~~~~~~~~~~~~~~ir~~~--p~~pvt~n~~~ 244 (645)
T 1kwg_A 201 -EPNPSHLLDYYRFASDQVRAFNRLQVEILRAHA--PGKFVTHNFMG 244 (645)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--TTCEEECEECT
T ss_pred -CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCcEEEeECc
Confidence 122334456777888889988888888888873 44566666543
No 8
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=39.92 E-value=30 Score=33.38 Aligned_cols=57 Identities=19% Similarity=0.231 Sum_probs=45.3
Q ss_pred CChhhhhcc---ccCCCCCCChHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCc
Q 017328 208 SHAAELTAG---YYNTRYCDGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVE 277 (373)
Q Consensus 208 sHaAElTAG---yYNt~~rdGY~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~ 277 (373)
--+.|..|| ..|.-...-|..++.+.+++|+.++.-++ +| ..++.|+...|.++||+
T Consensus 141 eaal~aga~~k~iINdvs~~~~~~~~~~aa~~g~~vv~m~~--~d-----------v~~l~~~~~~a~~~Gi~ 200 (310)
T 2h9a_B 141 PVIGEALSGRNCLLSSATKDNYKPIVATCMVHGHSVVASAP--LD-----------INLSKQLNIMIMEMNLA 200 (310)
T ss_dssp HHHHHHTTTSCCEEEEECTTTHHHHHHHHHHHTCEEEEECS--SC-----------HHHHHHHHHHHHTTTCC
T ss_pred HHHHHhCCCCCCEEEECCCCccHHHHHHHHHhCCCEEEECh--hH-----------HHHHHHHHHHHHHCCCC
Confidence 357778888 77765555699999999999999998764 22 37888999999999984
No 9
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=36.47 E-value=56 Score=30.24 Aligned_cols=60 Identities=13% Similarity=0.041 Sum_probs=44.0
Q ss_pred hHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCccccccccc
Q 017328 226 YIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALE 285 (373)
Q Consensus 226 Y~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~ 285 (373)
-..+++-+-..|+...++|+.-.--....--..--+.++..+.+..++.||.++|||.=-
T Consensus 128 ~~~Ll~e~i~~G~~aiiv~v~~~gL~~~~lG~~l~~~~~~~L~~l~~~~gvd~cGEgGEf 187 (237)
T 3rjz_A 128 AKEYMRELLNLGFKIMVVGVSAYGLDESWLGRILDESALEELITLNEKYKVHVAGEGGEF 187 (237)
T ss_dssp HHHHHHHHHHTTCEEEEEEEESTTCCGGGTTCBCCHHHHHHHHHHHHHHCCCTTCTTTTE
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCCChHHCCCccCHHHHHHHHHHHhhcCccccCCCcee
Confidence 467888888999999999986332111111133446799999999999999999999753
No 10
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=35.63 E-value=64 Score=24.71 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=37.8
Q ss_pred CChHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCccc
Q 017328 224 DGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELA 279 (373)
Q Consensus 224 dGY~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~ 279 (373)
-|+..+.+++++..+.|.+-.- .++| .++..+...|..++|++.
T Consensus 14 ~G~~~v~kai~~gkaklViiA~-----------D~~~-~~~~~i~~lc~~~~Ip~~ 57 (82)
T 3v7e_A 14 IGTKQTVKALKRGSVKEVVVAK-----------DADP-ILTSSVVSLAEDQGISVS 57 (82)
T ss_dssp ESHHHHHHHHTTTCEEEEEEET-----------TSCH-HHHHHHHHHHHHHTCCEE
T ss_pred EcHHHHHHHHHcCCeeEEEEeC-----------CCCH-HHHHHHHHHHHHcCCCEE
Confidence 5899999999999999988753 3566 799999999999999974
No 11
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*
Probab=35.20 E-value=32 Score=33.51 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=43.3
Q ss_pred Chhhhhcc---ccCCCCCCChHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCc
Q 017328 209 HAAELTAG---YYNTRYCDGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVE 277 (373)
Q Consensus 209 HaAElTAG---yYNt~~rdGY~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~ 277 (373)
-+.|..|| ..|..+.+-|..++.+.+++|+.++.-+. .| -.++.|+...|.++||+
T Consensus 149 aAleagag~~~lINsv~~~~~~~m~~laa~~g~~vVlmh~--~d-----------~~~~~~l~~~a~~~GI~ 207 (323)
T 4djd_D 149 AVAEAAAGENLLLGNAEQENYKSLTAACMVHKHNIIARSP--LD-----------INICKQLNILINEMNLP 207 (323)
T ss_dssp HHHHHTTTSCCEEEEEBTTBCHHHHHHHHHHTCEEEEECS--SC-----------HHHHHHHHHHHHTTTCC
T ss_pred HHHHhcCCCCCeEEECCcccHHHHHHHHHHhCCeEEEEcc--ch-----------HHHHHHHHHHHHHcCCC
Confidence 46666666 55666666689999999999999998763 11 36888999999999984
No 12
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=32.56 E-value=56 Score=27.34 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=39.0
Q ss_pred CChHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCccc
Q 017328 224 DGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELA 279 (373)
Q Consensus 224 dGY~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~ 279 (373)
-|+..+.+.+.+..+.|.+-.- .++|+.++..|...|+.++|++.
T Consensus 27 ~G~~~v~Kai~~gka~LViiA~-----------D~~p~~~~~~i~~lc~~~~Ip~~ 71 (126)
T 2xzm_U 27 KGLHEVLRTIEAKQALFVCVAE-----------DCDQGNYVKLVKALCAKNEIKYV 71 (126)
T ss_dssp ESHHHHHHHHHHTCCSEEEEES-----------SCCSTTHHHHHHHHHHHTTCCEE
T ss_pred ecHHHHHHHHHcCCceEEEEeC-----------CCChHHHHHHHHHHHHHhCCCEE
Confidence 5789999999999999988742 46788899999999999999975
No 13
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=31.84 E-value=78 Score=26.58 Aligned_cols=46 Identities=9% Similarity=0.127 Sum_probs=39.3
Q ss_pred CCChHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCccc
Q 017328 223 CDGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELA 279 (373)
Q Consensus 223 rdGY~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~ 279 (373)
.-|+..+.+.+++..+.|.+-.- .++|.+++..|...|+.++|++.
T Consensus 43 v~G~~~v~kal~~gkaklViiA~-----------D~~~~~~~~~l~~lc~~~~IP~~ 88 (135)
T 2aif_A 43 RKGANEATKALNRGIAEIVLLAA-----------DAEPLEILLHLPLVCEDKNTPYV 88 (135)
T ss_dssp EESHHHHHHHHHTTCEEEEEEET-----------TCSCHHHHHHHHHHHHHTTCCEE
T ss_pred ccCHHHHHHHHHcCCCeEEEEec-----------CCChHHHHhHHHHHHHhcCCcEE
Confidence 35899999999999999988753 46788899999999999999874
No 14
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=30.88 E-value=62 Score=26.63 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=38.4
Q ss_pred CChHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCccc
Q 017328 224 DGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELA 279 (373)
Q Consensus 224 dGY~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~ 279 (373)
-|+..+.+.+.+..+.|.+-.- .|+|..++..|...|+++||++.
T Consensus 23 ~G~~~v~kai~~gkakLViiA~-----------D~~~~~~~~~l~~lc~~~~VP~~ 67 (121)
T 2lbw_A 23 RGVKEVVKALRKGEKGLVVIAG-----------DIWPADVISHIPVLCEDHSVPYI 67 (121)
T ss_dssp ESHHHHHHHHHHSCCCEEEECT-----------TCSCTTHHHHHHHHHHHTCCCEE
T ss_pred ccHHHHHHHHHcCCceEEEEeC-----------CCCHHHHHHHHHHHHHhcCCcEE
Confidence 5799999999999999988743 46677799999999999999963
No 15
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.66 E-value=77 Score=24.93 Aligned_cols=43 Identities=14% Similarity=0.218 Sum_probs=36.6
Q ss_pred CChHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcc
Q 017328 224 DGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVEL 278 (373)
Q Consensus 224 dGY~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~ 278 (373)
-|+..+.+.+++..+.|.+-.-+ .|+..+..|...|..++|++
T Consensus 18 ~G~~~v~kai~~gka~lViiA~D------------~~~~~~~~i~~~c~~~~ip~ 60 (99)
T 3j21_Z 18 LGSNETIRLAKTGGAKLIIVAKN------------APKEIKDDIYYYAKLSDIPV 60 (99)
T ss_dssp ESHHHHHHHHHHTCCSEEEEECC------------CCHHHHHHHHHHHHHTTCCE
T ss_pred ECHHHHHHHHHcCCccEEEEeCC------------CCHHHHHHHHHHHHHcCCCE
Confidence 58999999999998988776422 36889999999999999996
No 16
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A*
Probab=29.90 E-value=80 Score=32.14 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=37.9
Q ss_pred hHHHHHHHHHcCcEE-EEee-----ccccCCCCCCCC-CCCh-----HHHHHHHHHHHHHcCCcccc
Q 017328 226 YIPIARMLAKHGAIL-NFTC-----MEMRDREQPGNA-NCSP-----EGLVQQVKMATRTAGVELAG 280 (373)
Q Consensus 226 Y~~Ia~mf~r~~~~l-~fTC-----lEM~d~e~p~~~-~s~P-----e~Lv~Qv~~aa~~~Gv~~~G 280 (373)
=...|++||+.|++. .+|+ .=|=+++..... ..+| ..||+++.+||+++||.+.-
T Consensus 64 ~~~W~~~~k~aGakyvvlt~kHHdGF~lw~S~~t~~~v~~~p~~~~krDiv~el~~A~r~~gl~~g~ 130 (478)
T 3ues_A 64 VDQWMDALVAGGMAGVILTCKHHDGFCLWPSRLTRHTVASSPWREGKGDLVREVSESARRHGLKFGV 130 (478)
T ss_dssp HHHHHHHHHHTTCSEEEEEEECTTCCBSSCCTTCSCBGGGSSGGGGTCCHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeEEecCCccccCCCCCCcccccCCccCCCCCHHHHHHHHHHHcCCeEEE
Confidence 477899999988764 3442 235555543321 2356 58999999999999998643
No 17
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=29.34 E-value=41 Score=32.66 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=37.7
Q ss_pred CCChHHHHHHHHHcCcE--EEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcccccccccccCh
Q 017328 223 CDGYIPIARMLAKHGAI--LNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDA 289 (373)
Q Consensus 223 rdGY~~Ia~mf~r~~~~--l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~ 289 (373)
+.-+..|.+.+.++|+. +++| ---||.+..+++.+|+++|++|-|-|.+-..++
T Consensus 90 ~~a~~ai~ea~~~~Gv~~vViiT-------------~G~~e~~~~~l~~~a~~~g~rliGPNc~Gii~p 145 (334)
T 3mwd_B 90 RSAYDSTMETMNYAQIRTIAIIA-------------EGIPEALTRKLIKKADQKGVTIIGPATVGGIKP 145 (334)
T ss_dssp TTHHHHHHHHTTSTTCCEEEECC-------------SCCCHHHHHHHHHHHHHHTCEEECSSCCCEEET
T ss_pred HHHHHHHHHHHHHCCCCEEEEEC-------------CCCCHHHHHHHHHHHHHcCCEEEccCCccccCc
Confidence 33455666666666553 3333 123578899999999999999999999875443
No 18
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=28.89 E-value=79 Score=24.89 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCccc
Q 017328 224 DGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELA 279 (373)
Q Consensus 224 dGY~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~ 279 (373)
-|+..+.+.+++..+.|.+-.-+ .|+.++..|...|+.++|++-
T Consensus 19 ~G~~~v~kai~~gka~lViiA~D------------~~~~~~~~l~~~c~~~~vp~~ 62 (101)
T 1w41_A 19 MGARKSIQYAKMGGAKLIIVARN------------ARPDIKEDIEYYARLSGIPVY 62 (101)
T ss_dssp ESHHHHHHHHHHTCCSEEEEETT------------SCHHHHHHHHHHHHHHTCCEE
T ss_pred ECHHHHHHHHHcCCCcEEEEeCC------------CCHHHHHHHHHHHHhcCCCEE
Confidence 57999999999998888876422 368999999999999999843
No 19
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=25.65 E-value=1.9e+02 Score=25.05 Aligned_cols=70 Identities=10% Similarity=-0.117 Sum_probs=39.7
Q ss_pred hHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCCh-HHHHHHHHHHHHHcCCcccccccc----cccChhHHHHHHHhc
Q 017328 226 YIPIARMLAKHGAILNFTCMEMRDREQPGNANCSP-EGLVQQVKMATRTAGVELAGENAL----ERYDADAYAQVLATS 299 (373)
Q Consensus 226 Y~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~P-e~Lv~Qv~~aa~~~Gv~~~GENAl----~~~d~~~~~qi~~~~ 299 (373)
....+++.++-|+.....+.-.... +....- ...++++...|+++||.|+=||-- ...+.....++++.+
T Consensus 87 ~~~~i~~a~~lG~~~v~~~~g~~~~----~~~~~~~~~~l~~l~~~a~~~gv~l~~E~~~~~~~~~~~~~~~~~l~~~v 161 (272)
T 2q02_A 87 TEGLLRDAQGVGARALVLCPLNDGT----IVPPEVTVEAIKRLSDLFARYDIQGLVEPLGFRVSSLRSAVWAQQLIREA 161 (272)
T ss_dssp HHHHHHHHHHHTCSEEEECCCCSSB----CCCHHHHHHHHHHHHHHHHTTTCEEEECCCCSTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEccCCCch----hHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccCHHHHHHHHHHh
Confidence 5677777777787765543221110 111112 445677777888889988888852 123444445555543
No 20
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=24.66 E-value=25 Score=28.35 Aligned_cols=61 Identities=11% Similarity=0.046 Sum_probs=39.1
Q ss_pred CChhHhhHHHHHHHHHHHhhhhcCceeEEEecccCCccccCCCCCCCCCCCcCCccceehhccHHHHHHHHHHHH
Q 017328 47 RTPIQVYSDYMRSFRDRFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAE 121 (373)
Q Consensus 47 RTpiq~Y~dfm~SF~~~F~~~~~~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDk~m~~~L~~~A~ 121 (373)
+.|...|.=||++||..|.....+.+++|.==| || .|+=-.--|=|-|.+-+..+-.++-+
T Consensus 6 KrP~SAy~lf~~~~r~~~k~~~p~~~~evsK~l---Ge-----------~Wk~ls~~eK~pye~kA~~dK~rYek 66 (91)
T 1l8y_A 6 ESPKRAEEIWQQSVIGDYLARFKNDRVKALKAM---EM-----------TWNNMEKKEKLMWIKKAAEDQKRYER 66 (91)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSTHHHHHHHH---HH-----------HHHTTGGGHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHH---HH-----------HHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999987655555553222 11 35544445556666666555444444
No 21
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=22.84 E-value=29 Score=26.73 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.0
Q ss_pred CChHHHHHHHHHHHHHcCCccccc
Q 017328 258 CSPEGLVQQVKMATRTAGVELAGE 281 (373)
Q Consensus 258 s~Pe~Lv~Qv~~aa~~~Gv~~~GE 281 (373)
--|++|-.+|..+|++.|+.++.|
T Consensus 25 RlP~eL~~~L~~~A~~~grSlNae 48 (69)
T 3qoq_A 25 RLPEGMREQIAEVARSHHRSMNSE 48 (69)
T ss_dssp ECCTTHHHHHHHHHHHTTCCHHHH
T ss_pred ECCHHHHHHHHHHHHHhCCCHHHH
Confidence 358999999999999999998764
No 22
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=22.52 E-value=1.1e+02 Score=29.75 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=41.6
Q ss_pred hhhhhccccCCCCCCChHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCCh--------HHHHHHHHHHHHHcCCc
Q 017328 210 AAELTAGYYNTRYCDGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSP--------EGLVQQVKMATRTAGVE 277 (373)
Q Consensus 210 aAElTAGyYNt~~rdGY~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~P--------e~Lv~Qv~~aa~~~Gv~ 277 (373)
|.|.-|...|.-...-+..++++.++++|.++. |-|+ ..|......| -..+.+.++.|.++||.
T Consensus 121 Al~aGa~iINDVsg~~~~~m~~v~a~~g~~vVl--Mh~~--G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~~GI~ 192 (314)
T 3tr9_A 121 AVNTGADMINDQRALQLDDALTTVSALKTPVCL--MHFP--SETRKPGSTTHFYFLQSVKKELQESIQRCKKAGIS 192 (314)
T ss_dssp HHHHTCCEEEETTTTCSTTHHHHHHHHTCCEEE--ECCC--CTTCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCCEEEECCCCCchHHHHHHHHhCCeEEE--ECCC--CCCcccccccccchHHHHHHHHHHHHHHHHHcCCC
Confidence 334446677765444467899999999999885 3343 3344334444 34456677888999986
No 23
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.52 E-value=1.7e+02 Score=30.58 Aligned_cols=17 Identities=12% Similarity=0.182 Sum_probs=13.6
Q ss_pred ccHHHHHHHHHHHHhcc
Q 017328 108 YDKYMRASLKASAEASS 124 (373)
Q Consensus 108 YDk~m~~~L~~~A~~~G 124 (373)
.|+..++.|++.+++.|
T Consensus 168 ~~~~y~~~l~~~l~~~g 184 (612)
T 3d3a_A 168 IDKPYISEIRDMVKQAG 184 (612)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHcC
Confidence 37777788999999875
No 24
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=22.40 E-value=44 Score=23.89 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.0
Q ss_pred CChHHHHHHHHHHHHHcCCccccc
Q 017328 258 CSPEGLVQQVKMATRTAGVELAGE 281 (373)
Q Consensus 258 s~Pe~Lv~Qv~~aa~~~Gv~~~GE 281 (373)
--|++|-.+|...|++.|+.++.+
T Consensus 13 Rlp~eL~~~l~~~A~~~grS~N~~ 36 (53)
T 1baz_A 13 RWPREVLDLVRKVAEENGRSVNSE 36 (53)
T ss_dssp ECCHHHHHHHHHHHHHTTCCHHHH
T ss_pred ECCHHHHHHHHHHHHHcCCCHHHH
Confidence 368999999999999999998763
No 25
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=22.21 E-value=1.5e+02 Score=23.82 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcc
Q 017328 224 DGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVEL 278 (373)
Q Consensus 224 dGY~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~ 278 (373)
-|+..+.+.+++..+.|.+-.- .+ |+.++..|...|+.++|++
T Consensus 24 ~G~~~v~kai~~gka~lViiA~-----------D~-~~~~~~~l~~~c~~~~Vp~ 66 (110)
T 3cpq_A 24 LGSKRTIKFVKHGEGKLVVLAG-----------NI-PKDLEEDVKYYAKLSNIPV 66 (110)
T ss_dssp ESHHHHHHHHHTTCCSEEEECT-----------TC-BHHHHHHHHHHHHHTTCCE
T ss_pred eCHHHHHHHHHcCCceEEEEeC-----------CC-CHHHHHHHHHHHHHcCCCE
Confidence 5799999999998888877632 34 7999999999999999984
No 26
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=21.59 E-value=43 Score=25.38 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=23.5
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCccccc
Q 017328 254 GNANCSPEGLVQQVKMATRTAGVELAGE 281 (373)
Q Consensus 254 ~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GE 281 (373)
.-..--|++|-.+|..+|++.|+.++.|
T Consensus 9 ~f~lRlp~eLh~~l~~~A~~~GrSlN~~ 36 (64)
T 1nla_A 9 QFLNRWPREVLDLVRKVAEENGRSVNSE 36 (64)
T ss_dssp GGGGSSCHHHHHHHHHHHHHHTSCHHHH
T ss_pred ceEeeCCHHHHHHHHHHHHHhCCCHHHH
Confidence 3345679999999999999999998654
No 27
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=21.41 E-value=97 Score=26.85 Aligned_cols=74 Identities=9% Similarity=0.050 Sum_probs=42.9
Q ss_pred hHHHHHHHHHcCcEEEEeeccccCCCCC-CCCCCChHHHHHHHHHHHHHcCCcccccccccc----cChhHHHHHHHhc
Q 017328 226 YIPIARMLAKHGAILNFTCMEMRDREQP-GNANCSPEGLVQQVKMATRTAGVELAGENALER----YDADAYAQVLATS 299 (373)
Q Consensus 226 Y~~Ia~mf~r~~~~l~fTClEM~d~e~p-~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~----~d~~~~~qi~~~~ 299 (373)
....+++.++-|+.....+.-......+ .+....-...++++...|+++||.|+=||--.. .+.....++++.+
T Consensus 86 ~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lEn~~~~~~~~~~~~~~~~l~~~~ 164 (278)
T 1i60_A 86 FKGMMETCKTLGVKYVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGVKIALEFVGHPQCTVNTFEQAYEIVNTV 164 (278)
T ss_dssp HHHHHHHHHHHTCCEEEEECCBCSSCCCHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCTTBSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecCCccchhcCHHHHHHHHHHh
Confidence 6778888888888766554222111000 000001123456677778889999999997532 3566677777654
No 28
>4acy_A Endo-alpha-mannosidase; hydrolase, endomannosidase, glycoside hydrolase, CAZY, enzyme-carbohydrate interaction, mannose; HET: MSE; 1.69A {Bacteroides thetaiotaomicron} PDB: 4acz_A 4ad0_A* 4acz_B
Probab=21.29 E-value=62 Score=31.95 Aligned_cols=56 Identities=13% Similarity=-0.020 Sum_probs=37.7
Q ss_pred cccCCCCCCChHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCccc
Q 017328 216 GYYNTRYCDGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELA 279 (373)
Q Consensus 216 GyYNt~~rdGY~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~ 279 (373)
|+|+..+.+=.+.=+++.+.+|++.-+-+.=..+ ++ -+.+|..++++|.+.|+.++
T Consensus 95 G~ysS~D~~v~~~hi~~ak~aGIDgfal~w~~~~--~~------~d~~l~~~~~aA~~~g~k~~ 150 (382)
T 4acy_A 95 GTYSSNDPEIIRKHIRMHIKANVGVLSVTWWGES--DY------GNQSVSLLLDEAAKVGAKVC 150 (382)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHTEEEEEEEECGGG--GT------TCHHHHHHHHHHHHHTCEEE
T ss_pred ccccCCCHHHHHHHHHHHHHcCCCEEEEEecCCC--Cc------hHHHHHHHHHHHHHcCCEEE
Confidence 6676655555556667777888876655442222 11 14789999999999998875
No 29
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}
Probab=20.95 E-value=1.2e+02 Score=30.14 Aligned_cols=48 Identities=6% Similarity=0.037 Sum_probs=35.0
Q ss_pred HHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcccc
Q 017328 228 PIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAG 280 (373)
Q Consensus 228 ~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~G 280 (373)
..++..+++|.+-.||||-.- .+....=...+.++.+.|++.|+.|..
T Consensus 21 ~yi~~a~~~Gf~~IFTSL~~~-----e~~~~~~~~~~~~l~~~a~~~g~~vi~ 68 (372)
T 2p0o_A 21 IYIKKMKALGFDGIFTSLHIP-----EDDTSLYRQRLTDLGAIAKAEKMKIMV 68 (372)
T ss_dssp HHHHHHHHTTCCEEEEEECCC----------CHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHCCCCEEEccCCcc-----CCChHHHHHHHHHHHHHHHHCCCEEEE
Confidence 457778899999999999643 222333467788999999999998754
No 30
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=20.42 E-value=1.1e+02 Score=30.47 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=33.5
Q ss_pred HHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCccccc
Q 017328 228 PIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGE 281 (373)
Q Consensus 228 ~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GE 281 (373)
..++..+++|.+-.||||-.-.. ....=...+.++.+.|++.|+.|..-
T Consensus 45 ~Yi~~a~~~Gf~~IFTSL~~~e~-----~~~~~~~~~~~l~~~a~~~g~~vi~D 93 (385)
T 1x7f_A 45 AYISAAARHGFSRIFTCLLSVNR-----PKEEIVAEFKEIINHAKDNNMEVILD 93 (385)
T ss_dssp HHHHHHHTTTEEEEEEEECCC-------------HHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHCCCCEEEccCCccCC-----ChHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 34677788999999999953211 11222567889999999999997653
No 31
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=20.30 E-value=90 Score=26.35 Aligned_cols=46 Identities=11% Similarity=0.200 Sum_probs=38.5
Q ss_pred CCChHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCccc
Q 017328 223 CDGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELA 279 (373)
Q Consensus 223 rdGY~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~ 279 (373)
.-|+..+.+.+++..+.|.+-.-+ ++|-.++..|...|++.||++.
T Consensus 34 ~~G~~~v~kai~~gkakLViiA~D-----------~~p~~~~~~l~~lc~~~~VP~~ 79 (134)
T 2ale_A 34 KKGANEATKTLNRGISEFIIMAAD-----------CEPIEILLHLPLLCEDKNVPYV 79 (134)
T ss_dssp EESHHHHHHHHHHTCEEEEEEETT-----------CSSGGGGTHHHHHHHHHTCCEE
T ss_pred ccCchHHHHHHHhCCCeEEEEeCC-----------CCHHHHHHHHHHHHHhcCCCEE
Confidence 468999999999999999987543 5566788999999999999953
No 32
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=20.18 E-value=1.7e+02 Score=27.66 Aligned_cols=68 Identities=13% Similarity=0.005 Sum_probs=41.7
Q ss_pred hhhhhccccCCCCCCChHHHHHHHHHcCcEEEEeecccc-CCCCCCCCCCCh----HHHHHHHHHHHHHcCCc
Q 017328 210 AAELTAGYYNTRYCDGYIPIARMLAKHGAILNFTCMEMR-DREQPGNANCSP----EGLVQQVKMATRTAGVE 277 (373)
Q Consensus 210 aAElTAGyYNt~~rdGY~~Ia~mf~r~~~~l~fTClEM~-d~e~p~~~~s~P----e~Lv~Qv~~aa~~~Gv~ 277 (373)
|.|.-|...|.-...-...++++.+++++.++..++.-. ..-|....+... -..+.+..+.|.++||+
T Consensus 106 Al~aGa~iINdvsg~~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~Gi~ 178 (282)
T 1aj0_A 106 SAKVGAHIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIA 178 (282)
T ss_dssp HHHTTCCEEEETTTTCSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCCEEEECCCCCCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHcCCC
Confidence 344455667755433567899999999999999887311 111111112232 45566677788889986
No 33
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=20.11 E-value=1e+02 Score=28.88 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=38.3
Q ss_pred cccCCCCCCChHHHHHHHHHcCcEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcc
Q 017328 216 GYYNTRYCDGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVEL 278 (373)
Q Consensus 216 GyYNt~~rdGY~~Ia~mf~r~~~~l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~ 278 (373)
+|||+-.+-|+...++.+++.|++-... .++. ||+ ...+..+++++|+.+
T Consensus 102 ~Y~npv~~~g~e~f~~~~~~aGvdgvii-~Dlp-----------~ee-~~~~~~~~~~~gl~~ 151 (267)
T 3vnd_A 102 LYANLVFANGIDEFYTKAQAAGVDSVLI-ADVP-----------VEE-SAPFSKAAKAHGIAP 151 (267)
T ss_dssp ECHHHHHHHCHHHHHHHHHHHTCCEEEE-TTSC-----------GGG-CHHHHHHHHHTTCEE
T ss_pred ecCcHHHHhhHHHHHHHHHHcCCCEEEe-CCCC-----------Hhh-HHHHHHHHHHcCCeE
Confidence 8999877789999999999999987544 2222 233 567888999999873
Done!