Query 017331
Match_columns 373
No_of_seqs 250 out of 1794
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 07:38:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02988 3-hydroxyisobutyryl-C 100.0 6.7E-72 1.4E-76 545.8 39.4 366 8-373 8-381 (381)
2 PLN02851 3-hydroxyisobutyryl-C 100.0 4E-71 8.7E-76 541.7 40.1 355 8-363 41-402 (407)
3 PLN02157 3-hydroxyisobutyryl-C 100.0 6.2E-69 1.3E-73 526.6 37.9 355 8-363 36-397 (401)
4 PLN02874 3-hydroxyisobutyryl-C 100.0 9.9E-69 2.2E-73 525.4 38.5 358 7-369 9-373 (379)
5 KOG1684 Enoyl-CoA hydratase [L 100.0 3.8E-67 8.2E-72 487.3 29.9 349 8-361 37-395 (401)
6 PRK05617 3-hydroxyisobutyryl-C 100.0 7.8E-65 1.7E-69 492.2 34.4 331 9-348 3-342 (342)
7 PRK05980 enoyl-CoA hydratase; 100.0 2.9E-53 6.3E-58 398.0 28.2 248 10-329 4-260 (260)
8 PRK05862 enoyl-CoA hydratase; 100.0 3.9E-53 8.5E-58 396.4 28.4 247 8-332 3-257 (257)
9 PRK06142 enoyl-CoA hydratase; 100.0 3.5E-53 7.6E-58 399.9 28.2 253 7-331 4-272 (272)
10 PRK06127 enoyl-CoA hydratase; 100.0 8.9E-53 1.9E-57 396.3 29.1 258 1-332 3-269 (269)
11 PRK08140 enoyl-CoA hydratase; 100.0 8.5E-53 1.8E-57 395.3 28.7 252 7-331 2-261 (262)
12 PRK08258 enoyl-CoA hydratase; 100.0 1.2E-52 2.6E-57 397.1 29.7 250 10-331 18-276 (277)
13 PRK09674 enoyl-CoA hydratase-i 100.0 8E-53 1.7E-57 393.8 28.0 245 9-331 2-254 (255)
14 PRK07799 enoyl-CoA hydratase; 100.0 1.1E-52 2.4E-57 394.6 28.7 251 8-332 4-263 (263)
15 PRK09076 enoyl-CoA hydratase; 100.0 1.5E-52 3.2E-57 392.7 29.1 247 8-331 2-257 (258)
16 PRK08150 enoyl-CoA hydratase; 100.0 1.3E-52 2.9E-57 392.1 28.4 245 9-331 2-254 (255)
17 PRK05809 3-hydroxybutyryl-CoA 100.0 1.2E-52 2.7E-57 393.7 28.3 251 6-332 1-260 (260)
18 TIGR02280 PaaB1 phenylacetate 100.0 1.8E-52 3.8E-57 391.8 27.8 247 11-331 1-255 (256)
19 KOG1680 Enoyl-CoA hydratase [L 100.0 1.4E-53 3E-58 385.9 19.2 243 11-331 39-289 (290)
20 PRK07658 enoyl-CoA hydratase; 100.0 1.8E-52 3.9E-57 392.0 27.5 247 9-331 2-256 (257)
21 PRK08139 enoyl-CoA hydratase; 100.0 3.5E-52 7.6E-57 391.6 29.2 250 6-331 8-265 (266)
22 PRK09245 enoyl-CoA hydratase; 100.0 2.6E-52 5.6E-57 392.8 28.1 251 9-331 3-265 (266)
23 PRK07657 enoyl-CoA hydratase; 100.0 2.9E-52 6.3E-57 391.2 28.1 248 9-332 3-260 (260)
24 PRK05981 enoyl-CoA hydratase; 100.0 2.8E-52 6.1E-57 392.6 28.0 254 6-331 1-265 (266)
25 PRK05995 enoyl-CoA hydratase; 100.0 3.3E-52 7.1E-57 391.3 28.1 252 7-332 2-262 (262)
26 PRK06563 enoyl-CoA hydratase; 100.0 2.3E-52 5.1E-57 390.7 26.6 245 11-331 1-254 (255)
27 PLN02664 enoyl-CoA hydratase/d 100.0 3.7E-52 8.1E-57 393.3 28.1 249 11-331 10-274 (275)
28 PRK06494 enoyl-CoA hydratase; 100.0 5.4E-52 1.2E-56 389.1 28.2 246 7-331 2-258 (259)
29 PRK08138 enoyl-CoA hydratase; 100.0 6.8E-52 1.5E-56 388.8 28.8 246 8-331 6-260 (261)
30 PLN02600 enoyl-CoA hydratase 100.0 3.7E-52 8E-57 388.3 26.7 241 16-332 2-251 (251)
31 PRK08252 enoyl-CoA hydratase; 100.0 6.8E-52 1.5E-56 387.3 28.0 243 9-331 3-253 (254)
32 PRK07659 enoyl-CoA hydratase; 100.0 1.1E-51 2.4E-56 387.2 26.7 249 7-332 4-260 (260)
33 PRK05674 gamma-carboxygeranoyl 100.0 1.1E-51 2.3E-56 388.1 26.4 251 7-331 3-263 (265)
34 PRK07468 enoyl-CoA hydratase; 100.0 1.7E-51 3.8E-56 386.2 27.9 250 8-331 3-261 (262)
35 PRK06210 enoyl-CoA hydratase; 100.0 1.8E-51 3.9E-56 388.3 27.3 254 6-331 2-271 (272)
36 PRK07511 enoyl-CoA hydratase; 100.0 2.8E-51 6.2E-56 384.5 28.4 248 10-330 4-259 (260)
37 PRK07327 enoyl-CoA hydratase; 100.0 2.2E-51 4.7E-56 386.7 27.6 253 1-331 3-267 (268)
38 PRK09120 p-hydroxycinnamoyl Co 100.0 4E-51 8.8E-56 386.0 28.9 248 5-323 4-262 (275)
39 PRK06688 enoyl-CoA hydratase; 100.0 3.1E-51 6.7E-56 384.1 27.3 248 7-331 3-258 (259)
40 PRK06495 enoyl-CoA hydratase; 100.0 3.7E-51 8E-56 383.0 27.8 248 6-331 1-256 (257)
41 PRK05864 enoyl-CoA hydratase; 100.0 4.2E-51 9E-56 386.4 27.5 255 6-332 6-275 (276)
42 TIGR03210 badI 2-ketocyclohexa 100.0 3.7E-51 8.1E-56 382.6 26.7 245 8-331 1-255 (256)
43 TIGR01929 menB naphthoate synt 100.0 3.6E-51 7.9E-56 383.4 26.4 247 9-331 2-258 (259)
44 PRK07260 enoyl-CoA hydratase; 100.0 7.6E-51 1.7E-55 380.5 26.5 244 9-323 2-253 (255)
45 PRK03580 carnitinyl-CoA dehydr 100.0 1.2E-50 2.6E-55 380.3 27.6 244 10-331 4-260 (261)
46 PRK11423 methylmalonyl-CoA dec 100.0 1E-50 2.2E-55 380.6 27.0 249 6-332 1-261 (261)
47 PRK08260 enoyl-CoA hydratase; 100.0 1.2E-50 2.6E-55 386.8 27.6 253 7-332 2-278 (296)
48 PRK06072 enoyl-CoA hydratase; 100.0 1.7E-50 3.7E-55 376.5 27.7 240 11-332 2-248 (248)
49 PRK06144 enoyl-CoA hydratase; 100.0 1.4E-50 3.1E-55 379.9 27.1 245 8-331 7-261 (262)
50 PRK07509 enoyl-CoA hydratase; 100.0 1.7E-50 3.8E-55 379.6 27.4 248 8-330 2-261 (262)
51 PRK06143 enoyl-CoA hydratase; 100.0 1.7E-50 3.7E-55 378.1 26.6 240 8-323 5-254 (256)
52 PRK07396 dihydroxynaphthoic ac 100.0 2.2E-50 4.7E-55 380.8 27.4 249 7-331 11-268 (273)
53 TIGR03189 dienoyl_CoA_hyt cycl 100.0 4.7E-50 1E-54 374.0 27.2 239 11-331 3-250 (251)
54 PRK08259 enoyl-CoA hydratase; 100.0 2.7E-50 5.8E-55 376.3 25.6 241 9-327 3-251 (254)
55 COG1024 CaiD Enoyl-CoA hydrata 100.0 5.3E-50 1.2E-54 375.3 26.9 246 7-329 3-257 (257)
56 PLN02888 enoyl-CoA hydratase 100.0 9.2E-50 2E-54 374.8 27.8 247 6-329 6-261 (265)
57 PRK07827 enoyl-CoA hydratase; 100.0 7.7E-50 1.7E-54 374.7 27.1 248 8-330 5-259 (260)
58 PRK05870 enoyl-CoA hydratase; 100.0 4.7E-50 1E-54 373.8 24.7 237 9-322 3-248 (249)
59 PRK06023 enoyl-CoA hydratase; 100.0 1.2E-49 2.7E-54 371.4 26.0 238 9-323 3-251 (251)
60 PRK07854 enoyl-CoA hydratase; 100.0 1.8E-49 3.9E-54 368.4 26.9 233 11-331 2-242 (243)
61 PRK12478 enoyl-CoA hydratase; 100.0 8.4E-50 1.8E-54 380.7 24.1 252 7-334 3-283 (298)
62 PLN02921 naphthoate synthase 100.0 3.5E-49 7.6E-54 379.6 28.0 249 7-331 63-322 (327)
63 PF00378 ECH: Enoyl-CoA hydrat 100.0 2.1E-49 4.6E-54 368.7 23.9 237 12-323 1-245 (245)
64 PRK07938 enoyl-CoA hydratase; 100.0 4.7E-49 1E-53 366.9 26.0 235 14-327 7-249 (249)
65 PRK07112 polyketide biosynthes 100.0 5.8E-49 1.3E-53 367.6 26.3 245 7-331 2-254 (255)
66 PRK08321 naphthoate synthase; 100.0 1.2E-48 2.5E-53 373.7 26.6 252 8-332 22-298 (302)
67 PLN03214 probable enoyl-CoA hy 100.0 1.6E-48 3.5E-53 368.5 25.4 244 6-323 8-263 (278)
68 PRK06190 enoyl-CoA hydratase; 100.0 7.3E-48 1.6E-52 360.3 26.4 246 6-325 1-254 (258)
69 PRK07110 polyketide biosynthes 100.0 8.8E-48 1.9E-52 358.5 26.4 236 7-319 3-246 (249)
70 TIGR03222 benzo_boxC benzoyl-C 100.0 4.1E-47 8.8E-52 384.7 26.2 247 11-333 260-545 (546)
71 PRK08184 benzoyl-CoA-dihydrodi 100.0 4.6E-47 1E-51 385.6 25.2 251 8-334 259-550 (550)
72 PRK08290 enoyl-CoA hydratase; 100.0 3.3E-45 7.2E-50 347.6 23.8 230 6-304 1-257 (288)
73 PRK05869 enoyl-CoA hydratase; 100.0 3.8E-45 8.2E-50 334.8 22.0 206 8-285 2-220 (222)
74 PRK08788 enoyl-CoA hydratase; 100.0 1.5E-43 3.2E-48 334.8 27.4 239 10-319 18-273 (287)
75 PRK11730 fadB multifunctional 100.0 5.9E-44 1.3E-48 376.0 27.3 277 10-323 7-296 (715)
76 KOG1679 Enoyl-CoA hydratase [L 100.0 7E-45 1.5E-49 316.3 13.9 251 10-332 28-291 (291)
77 PRK08272 enoyl-CoA hydratase; 100.0 2.1E-43 4.6E-48 337.8 25.4 212 5-286 6-246 (302)
78 PRK06213 enoyl-CoA hydratase; 100.0 1.8E-43 3.9E-48 325.6 22.1 217 9-300 3-228 (229)
79 PRK11154 fadJ multifunctional 100.0 2.5E-42 5.5E-47 363.5 27.5 272 9-323 5-294 (708)
80 TIGR03200 dearomat_oah 6-oxocy 100.0 5.9E-42 1.3E-46 327.2 25.9 279 19-323 38-328 (360)
81 KOG1681 Enoyl-CoA isomerase [L 100.0 2.1E-43 4.5E-48 309.8 13.9 253 8-330 18-290 (292)
82 TIGR02440 FadJ fatty oxidation 100.0 9.9E-42 2.2E-46 358.3 25.4 271 13-323 5-289 (699)
83 TIGR02437 FadB fatty oxidation 100.0 7.1E-41 1.5E-45 352.0 27.4 279 10-323 7-297 (714)
84 COG0447 MenB Dihydroxynaphthoi 100.0 9.7E-42 2.1E-46 297.2 12.0 247 7-330 16-276 (282)
85 PLN02267 enoyl-CoA hydratase/i 100.0 5.1E-40 1.1E-44 304.2 22.6 175 11-188 2-188 (239)
86 TIGR02441 fa_ox_alpha_mit fatt 100.0 1.1E-39 2.4E-44 343.8 27.8 284 6-323 10-321 (737)
87 KOG0016 Enoyl-CoA hydratase/is 100.0 9.1E-39 2E-43 286.9 21.2 247 5-321 3-261 (266)
88 KOG1682 Enoyl-CoA isomerase [L 100.0 3.2E-39 7E-44 278.9 17.3 246 11-331 34-286 (287)
89 cd06558 crotonase-like Crotona 100.0 1.2E-37 2.6E-42 279.5 20.3 180 11-192 1-188 (195)
90 TIGR03222 benzo_boxC benzoyl-C 100.0 3.8E-37 8.2E-42 312.1 22.5 188 3-191 5-218 (546)
91 PRK08184 benzoyl-CoA-dihydrodi 100.0 2.7E-36 5.9E-41 306.8 22.6 186 4-190 10-221 (550)
92 PF13766 ECH_C: 2-enoyl-CoA Hy 99.9 1.1E-23 2.4E-28 173.4 11.2 115 226-347 4-118 (118)
93 cd07014 S49_SppA Signal peptid 99.8 1.7E-18 3.7E-23 153.3 11.1 133 36-188 22-172 (177)
94 cd07020 Clp_protease_NfeD_1 No 99.7 1.9E-17 4.2E-22 147.8 12.9 140 20-188 2-169 (187)
95 cd07019 S49_SppA_1 Signal pept 99.7 1.4E-16 3E-21 144.9 11.3 102 18-139 1-104 (211)
96 cd07022 S49_Sppa_36K_type Sign 99.5 8.7E-14 1.9E-18 126.9 13.8 96 25-141 13-109 (214)
97 cd00394 Clp_protease_like Case 99.5 8E-14 1.7E-18 121.3 11.4 127 33-182 8-161 (161)
98 cd07023 S49_Sppa_N_C Signal pe 99.5 1.1E-13 2.3E-18 125.8 12.4 100 19-140 2-101 (208)
99 TIGR00705 SppA_67K signal pept 99.4 1.1E-12 2.3E-17 135.9 12.1 153 15-187 306-513 (584)
100 TIGR00706 SppA_dom signal pept 99.4 2.6E-12 5.6E-17 116.5 12.7 93 19-140 2-96 (207)
101 cd07016 S14_ClpP_1 Caseinolyti 99.4 1.7E-12 3.6E-17 113.0 10.0 121 36-182 15-160 (160)
102 cd07018 S49_SppA_67K_type Sign 99.3 1.3E-11 2.8E-16 113.1 10.8 89 32-141 25-113 (222)
103 cd07021 Clp_protease_NfeD_like 99.2 1.2E-10 2.6E-15 103.0 12.5 133 20-185 2-171 (178)
104 cd07015 Clp_protease_NfeD Nodu 98.7 1.6E-07 3.4E-12 82.4 12.6 129 33-185 10-165 (172)
105 cd07013 S14_ClpP Caseinolytic 98.7 1.5E-07 3.3E-12 82.0 10.8 127 33-182 9-162 (162)
106 PRK10949 protease 4; Provision 98.7 4.7E-07 1E-11 94.3 15.1 150 16-188 325-532 (618)
107 KOG1683 Hydroxyacyl-CoA dehydr 98.5 9.6E-08 2.1E-12 91.3 5.4 162 18-185 66-240 (380)
108 PRK00277 clpP ATP-dependent Cl 98.5 9.2E-07 2E-11 79.8 11.3 127 33-185 40-196 (200)
109 cd07017 S14_ClpP_2 Caseinolyti 98.4 2.3E-06 5E-11 75.2 10.5 134 21-182 11-171 (171)
110 PF00574 CLP_protease: Clp pro 98.4 1.8E-06 3.8E-11 76.7 9.8 137 21-185 18-181 (182)
111 PRK12553 ATP-dependent Clp pro 98.4 5.2E-06 1.1E-10 75.2 12.4 128 33-185 44-202 (207)
112 CHL00198 accA acetyl-CoA carbo 98.4 1.3E-05 2.8E-10 76.5 15.1 134 30-185 132-270 (322)
113 COG0616 SppA Periplasmic serin 98.4 3.9E-06 8.4E-11 81.0 11.5 88 38-146 82-169 (317)
114 PRK11778 putative inner membra 98.3 1E-05 2.2E-10 77.9 13.7 148 16-188 89-289 (330)
115 PRK12319 acetyl-CoA carboxylas 98.3 2.3E-05 5E-10 73.0 14.8 135 30-186 76-215 (256)
116 PLN03229 acetyl-coenzyme A car 98.2 3.4E-05 7.3E-10 80.1 15.7 134 30-185 220-358 (762)
117 PRK14512 ATP-dependent Clp pro 98.2 1.4E-05 3E-10 71.9 11.1 130 33-185 32-188 (197)
118 CHL00028 clpP ATP-dependent Cl 98.2 2.2E-05 4.7E-10 70.7 12.0 129 33-186 39-197 (200)
119 PRK05724 acetyl-CoA carboxylas 98.2 4.3E-05 9.2E-10 73.1 14.4 134 30-185 129-267 (319)
120 TIGR00513 accA acetyl-CoA carb 98.2 6.1E-05 1.3E-09 72.0 14.8 134 30-185 129-267 (316)
121 PF01972 SDH_sah: Serine dehyd 98.1 5.9E-05 1.3E-09 69.9 12.6 96 31-152 70-165 (285)
122 PLN03230 acetyl-coenzyme A car 98.1 0.00012 2.5E-09 71.9 15.1 133 31-185 200-337 (431)
123 TIGR00493 clpP ATP-dependent C 98.1 7.9E-05 1.7E-09 66.7 13.1 129 33-184 35-190 (191)
124 TIGR03133 malonate_beta malona 98.0 0.00049 1.1E-08 64.7 18.0 143 19-187 61-219 (274)
125 PRK12551 ATP-dependent Clp pro 98.0 7E-05 1.5E-09 67.2 11.2 131 33-186 34-191 (196)
126 PRK14514 ATP-dependent Clp pro 98.0 8.9E-05 1.9E-09 67.6 11.3 89 97-185 104-219 (221)
127 PRK14513 ATP-dependent Clp pro 97.9 0.00013 2.7E-09 65.7 11.4 128 32-187 35-194 (201)
128 TIGR00515 accD acetyl-CoA carb 97.8 0.0014 3E-08 62.2 17.0 149 16-190 118-270 (285)
129 PRK07189 malonate decarboxylas 97.8 0.00063 1.4E-08 64.7 13.7 152 19-187 70-228 (301)
130 PF01343 Peptidase_S49: Peptid 97.7 4.4E-05 9.6E-10 65.9 5.3 39 102-140 3-41 (154)
131 PRK05654 acetyl-CoA carboxylas 97.7 0.0018 4E-08 61.6 16.2 150 15-190 118-271 (292)
132 CHL00174 accD acetyl-CoA carbo 97.7 0.0028 6E-08 60.1 16.3 146 19-190 135-284 (296)
133 TIGR03134 malonate_gamma malon 97.6 0.0027 5.8E-08 58.7 14.9 151 17-187 31-191 (238)
134 TIGR00705 SppA_67K signal pept 97.4 0.0011 2.3E-08 69.4 11.1 84 37-140 77-160 (584)
135 COG0740 ClpP Protease subunit 97.4 0.0017 3.6E-08 58.0 10.7 89 97-187 77-194 (200)
136 PRK12552 ATP-dependent Clp pro 97.4 0.0025 5.5E-08 58.1 11.4 133 33-185 49-214 (222)
137 TIGR01117 mmdA methylmalonyl-C 97.3 0.0052 1.1E-07 63.2 13.9 152 17-190 314-486 (512)
138 PF01039 Carboxyl_trans: Carbo 97.3 0.0028 6E-08 65.0 11.8 136 22-187 62-207 (493)
139 PRK10949 protease 4; Provision 97.0 0.0045 9.7E-08 65.0 11.0 84 37-140 96-179 (618)
140 PLN02820 3-methylcrotonyl-CoA 97.0 0.016 3.5E-07 60.1 14.0 139 22-187 133-281 (569)
141 COG1030 NfeD Membrane-bound se 96.9 0.015 3.2E-07 57.6 12.3 141 16-185 25-188 (436)
142 TIGR01117 mmdA methylmalonyl-C 96.7 0.025 5.4E-07 58.2 13.1 128 29-186 94-229 (512)
143 COG0777 AccD Acetyl-CoA carbox 96.2 0.15 3.4E-06 47.4 13.4 145 19-189 124-271 (294)
144 COG0825 AccA Acetyl-CoA carbox 96.1 0.0044 9.6E-08 57.9 3.3 84 95-185 178-266 (317)
145 COG4799 Acetyl-CoA carboxylase 95.3 0.23 4.9E-06 50.8 12.0 201 20-250 93-313 (526)
146 PF01039 Carboxyl_trans: Carbo 94.9 0.27 5.8E-06 50.6 11.5 152 17-190 293-469 (493)
147 PLN02157 3-hydroxyisobutyryl-C 93.9 0.095 2.1E-06 52.3 5.4 68 261-334 228-298 (401)
148 KOG0840 ATP-dependent Clp prot 93.7 0.31 6.6E-06 45.0 7.8 125 33-185 101-257 (275)
149 PLN02820 3-methylcrotonyl-CoA 93.4 1.5 3.2E-05 45.8 13.3 136 31-188 380-543 (569)
150 COG4799 Acetyl-CoA carboxylase 89.4 3.1 6.8E-05 42.7 10.4 149 22-188 328-497 (526)
151 PF02601 Exonuc_VII_L: Exonucl 72.6 8.9 0.00019 36.9 6.1 78 36-136 55-136 (319)
152 KOG0540 3-Methylcrotonyl-CoA c 71.5 33 0.00072 34.6 9.6 106 20-140 351-460 (536)
153 TIGR00237 xseA exodeoxyribonuc 66.0 16 0.00035 36.9 6.6 78 36-136 170-248 (432)
154 COG1570 XseA Exonuclease VII, 64.0 14 0.0003 37.3 5.4 39 96-136 216-254 (440)
155 PRK00286 xseA exodeoxyribonucl 59.1 21 0.00046 36.0 6.0 77 36-136 176-253 (438)
156 smart00250 PLEC Plectin repeat 49.8 13 0.00029 23.7 1.9 19 163-181 17-35 (38)
157 COG0074 SucD Succinyl-CoA synt 49.4 51 0.0011 31.3 6.3 51 43-117 190-240 (293)
158 COG4565 CitB Response regulato 47.9 45 0.00098 30.3 5.5 51 147-197 55-116 (224)
159 PF06833 MdcE: Malonate decarb 47.8 40 0.00086 31.1 5.2 95 30-136 40-137 (234)
160 TIGR00377 ant_ant_sig anti-ant 45.7 79 0.0017 24.4 6.3 49 10-63 4-52 (108)
161 COG3592 Uncharacterized conser 40.1 22 0.00048 26.0 1.9 40 309-352 28-67 (74)
162 TIGR02886 spore_II_AA anti-sig 39.7 1.4E+02 0.0031 23.0 6.9 47 12-63 2-48 (106)
163 PF00681 Plectin: Plectin repe 39.4 15 0.00032 24.5 0.8 19 163-181 17-35 (45)
164 PF01740 STAS: STAS domain; I 38.4 1.3E+02 0.0027 23.7 6.5 48 11-63 2-57 (117)
165 PF13607 Succ_CoA_lig: Succiny 36.7 99 0.0021 26.0 5.7 52 40-116 41-92 (138)
166 PTZ00187 succinyl-CoA syntheta 36.2 97 0.0021 30.0 6.2 15 103-117 250-264 (317)
167 PLN02522 ATP citrate (pro-S)-l 33.9 1.1E+02 0.0024 32.4 6.6 14 104-117 249-262 (608)
168 COG0793 Prc Periplasmic protea 33.4 32 0.0007 34.5 2.6 96 19-126 205-308 (406)
169 PF00549 Ligase_CoA: CoA-ligas 32.5 56 0.0012 28.0 3.6 66 33-118 56-121 (153)
170 PLN00125 Succinyl-CoA ligase [ 27.5 1.4E+02 0.0031 28.6 5.8 13 105-117 233-245 (300)
171 PF03464 eRF1_2: eRF1 domain 2 26.6 1E+02 0.0023 25.4 4.2 44 20-63 26-83 (133)
172 PF14842 FliG_N: FliG N-termin 24.8 1.1E+02 0.0025 24.3 3.9 67 183-249 30-100 (108)
173 cd07043 STAS_anti-anti-sigma_f 24.5 2E+02 0.0043 21.4 5.2 48 13-66 3-51 (99)
174 PRK14556 pyrH uridylate kinase 24.1 2.3E+02 0.0051 26.4 6.3 40 28-68 30-69 (249)
175 PLN00049 carboxyl-terminal pro 23.7 48 0.001 32.9 1.9 101 17-126 194-300 (389)
176 PRK14053 methyltransferase; Pr 23.0 1.1E+02 0.0025 27.0 3.8 67 11-77 16-89 (194)
177 COG3660 Predicted nucleoside-d 22.5 2.7E+02 0.0058 26.5 6.2 116 20-137 130-255 (329)
178 COG0528 PyrH Uridylate kinase 21.9 3.1E+02 0.0066 25.4 6.5 54 7-66 4-57 (238)
179 smart00870 Asparaginase Aspara 21.7 3.3E+02 0.0072 26.2 7.2 31 31-61 55-85 (323)
180 PF08810 KapB: Kinase associat 21.4 1.1E+02 0.0024 24.7 3.1 31 238-268 76-106 (112)
181 KOG0595 Serine/threonine-prote 21.4 1.4E+02 0.0031 29.8 4.5 38 66-103 90-127 (429)
182 PF00195 Chal_sti_synt_N: Chal 20.6 1E+02 0.0022 28.3 3.2 74 41-137 108-183 (226)
183 PF04208 MtrA: Tetrahydrometha 20.5 1.3E+02 0.0027 26.4 3.5 66 11-76 16-91 (176)
184 cd03225 ABC_cobalt_CbiO_domain 20.2 2.4E+02 0.0052 24.8 5.5 37 20-59 154-190 (211)
No 1
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=6.7e-72 Score=545.84 Aligned_cols=366 Identities=73% Similarity=1.196 Sum_probs=319.6
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhH
Q 017331 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISG 87 (373)
Q Consensus 8 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 87 (373)
...|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.|++||+|+|++++......+.....
T Consensus 8 ~~~v~~~~~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~ 87 (381)
T PLN02988 8 QSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLG 87 (381)
T ss_pred CCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHH
Confidence 44688999999999999999999999999999999999999999999999999999999999999998643222211122
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc-----
Q 017331 88 AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG----- 162 (373)
Q Consensus 88 ~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g----- 162 (373)
..++...+.+...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 88 ~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~~~~~ 167 (381)
T PLN02988 88 ANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEY 167 (381)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHHHHHH
Confidence 344555566777899999999999999999999999999999999999999999999999999999999999988
Q ss_pred --ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCH
Q 017331 163 --FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 240 (373)
Q Consensus 163 --l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 240 (373)
+||++++|+||+++|||+++||++++..+..+++++....|..+..+++.+...+...+.+.......|++||+.+|+
T Consensus 168 l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~~~ 247 (381)
T PLN02988 168 VGLTGARLDGAEMLACGLATHFVPSTRLTALEADLCRIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRRTV 247 (381)
T ss_pred HHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHHHhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCCH
Confidence 899999999999999999999999999888888887777788888888888654432233455568999999999999
Q ss_pred HHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhhh
Q 017331 241 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 320 (373)
Q Consensus 241 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~l 320 (373)
+||+++|+.+.++..++|++++++.|.+.||+|+++|+++++++...++.++++.|+++..+++....++||.|||||.|
T Consensus 248 ~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~L 327 (381)
T PLN02988 248 EEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRAIL 327 (381)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHh
Confidence 99999999864333579999999999999999999999999999999999999999999999996211249999999999
Q ss_pred ccCCCCCCCCCCCccCCCHHHHHhhccCCCCCC-ccccccCCcCCCchhhhccC
Q 017331 321 LDKDKNPKWKPSKLELVNDNMVDQYFSKINDDR-WEDIKLPARSNLPATAIAKL 373 (373)
Q Consensus 321 ~eK~r~P~w~~~~~~~v~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 373 (373)
+||++.|+|+++++++|+++.|++||+|++.++ |-+|.||+|-..++.|.+|+
T Consensus 328 iDKd~~P~W~p~~l~~v~~~~v~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 381 (381)
T PLN02988 328 VDKDKNPKWEPRRLEDMKDSMVEQYFERVEEEEEWDDLKLPPRNNLPALAIAKL 381 (381)
T ss_pred cCCCCCCCCCCCChhhCCHHHHHHHhCCCCccccccccCCcccccccchhhccC
Confidence 999999999999999999999999999997743 77899999655566556654
No 2
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=4e-71 Score=541.70 Aligned_cols=355 Identities=47% Similarity=0.801 Sum_probs=317.1
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhH
Q 017331 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISG 87 (373)
Q Consensus 8 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 87 (373)
.+.|.++..+++++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.|++||+|+|++++......+.....
T Consensus 41 ~~~v~~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 120 (407)
T PLN02851 41 QDQVLVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEEC 120 (407)
T ss_pred CCCeEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999998753222222334
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc-----
Q 017331 88 AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG----- 162 (373)
Q Consensus 88 ~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g----- 162 (373)
..++...+.+.+.|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++|+|+|++|
T Consensus 121 ~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~g~~ 200 (407)
T PLN02851 121 KLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLGEY 200 (407)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHHHHH
Confidence 567778888999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCH
Q 017331 163 --FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 240 (373)
Q Consensus 163 --l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 240 (373)
+||++++|+||+++||++++||++++..+.+.+.++....+..+.+++++|.....++..++......|++||+.+|+
T Consensus 201 L~LTG~~i~a~eA~~~GLa~~~v~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~sv 280 (407)
T PLN02851 201 LALTGQKLNGVEMIACGLATHYCLNARLPLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHDTV 280 (407)
T ss_pred HHHhCCcCCHHHHHHCCCceeecCHhhHHHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCCCH
Confidence 899999999999999999999999998888888888777788899999999754333334556668999999999999
Q ss_pred HHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhhh
Q 017331 241 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 320 (373)
Q Consensus 241 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~l 320 (373)
+||+++|+.+.....++|++++++.|.+.||+|+++|+++++++...++.++++.|+++..+++....++||.|||||.|
T Consensus 281 ~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA~L 360 (407)
T PLN02851 281 EEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRARL 360 (407)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHHHHh
Confidence 99999999864433578999999999999999999999999999999999999999999999873111359999999999
Q ss_pred ccCCCCCCCCCCCccCCCHHHHHhhccCCCCCCccccccCCcC
Q 017331 321 LDKDKNPKWKPSKLELVNDNMVDQYFSKINDDRWEDIKLPARS 363 (373)
Q Consensus 321 ~eK~r~P~w~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~ 363 (373)
+||++.|+|+++++++|+++.|++||.|++..+| +|+||++-
T Consensus 361 IDKd~~P~W~p~sl~~V~~~~v~~~f~~~~~~~~-~l~~~~~~ 402 (407)
T PLN02851 361 VDKDFAPKWDPPSLGEVSKDMVDCYFTPLDESES-ELELPTAQ 402 (407)
T ss_pred cCCCCCCCCCCCChhhCCHHHHHHHhCCCCCCcc-cccCCccc
Confidence 9999999999999999999999999999966444 79999863
No 3
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=6.2e-69 Score=526.57 Aligned_cols=355 Identities=47% Similarity=0.812 Sum_probs=308.4
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhH
Q 017331 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISG 87 (373)
Q Consensus 8 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 87 (373)
.+.|.++++|+|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.|++||+|+|++++......+.....
T Consensus 36 ~~~V~~e~~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 115 (401)
T PLN02157 36 DYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI 115 (401)
T ss_pred CCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999998653221111223
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc-----
Q 017331 88 AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG----- 162 (373)
Q Consensus 88 ~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g----- 162 (373)
..++...+.+...|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|
T Consensus 116 ~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~~a~~ 195 (401)
T PLN02157 116 REFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEY 195 (401)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhHHHHH
Confidence 345556667788899999999999999999999999999999999999999999999999999999999999998
Q ss_pred --ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCH
Q 017331 163 --FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 240 (373)
Q Consensus 163 --l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 240 (373)
+||++++|+||+++|||+++||++++..+.+.+.++....|..+..+++.+.....+....+......|.+||+.+++
T Consensus 196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l~~~~~~~~~i~~~~p~av~~~k~~~~~~~~~~~~~l~~~~~~i~~~f~~~d~ 275 (401)
T PLN02157 196 LGLTGLKLSGAEMLACGLATHYIRSEEIPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFSHDTV 275 (401)
T ss_pred HHHcCCcCCHHHHHHcCCceEEeCHhHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHhcCCCH
Confidence 899999999999999999999999987777777777777788888888777543222223344457889999999999
Q ss_pred HHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhhh
Q 017331 241 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 320 (373)
Q Consensus 241 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~l 320 (373)
+||+++|+.+.....++|++++++.|.+.||+|+++|.++++++...++.++++.|+++..+++....++||.|||||.|
T Consensus 276 ~ei~~al~~~~~kr~~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~L 355 (401)
T PLN02157 276 EEIIDSLEIEAGRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLIGPMSGNFCEGVRARL 355 (401)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 99999998754433578999999999999999999999999999989999999999999999985211359999999999
Q ss_pred ccCCCCCCCCCCCccCCCHHHHHhhccCCCCCCccccccCCcC
Q 017331 321 LDKDKNPKWKPSKLELVNDNMVDQYFSKINDDRWEDIKLPARS 363 (373)
Q Consensus 321 ~eK~r~P~w~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~ 363 (373)
+||++.|+|+++++++|+++.|++||.|+.|+ ..+|+||+++
T Consensus 356 iDKd~~P~W~p~~l~~V~~~~v~~~f~~~~~~-~~~l~~~~~~ 397 (401)
T PLN02157 356 IDKDEAPKWDPPSLEKVSEDMVDDYFCALTPT-EPDLDLPVKL 397 (401)
T ss_pred cCCCCCCCCCCCChhhCCHHHHHHHhCCCCCC-ccccccchhh
Confidence 99999999999999999999999999998632 2468888774
No 4
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=9.9e-69 Score=525.41 Aligned_cols=358 Identities=45% Similarity=0.782 Sum_probs=315.0
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhh
Q 017331 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWIS 86 (373)
Q Consensus 7 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 86 (373)
.++.|.++++|+|++|+||||+++|+||.+|+.+|.++++.++.|++||+|||||.|++||+|+|++++....... ..
T Consensus 9 ~~~~v~~~~~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~--~~ 86 (379)
T PLN02874 9 AEEVVLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESD--DS 86 (379)
T ss_pred CCCceEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccc--hH
Confidence 3567999999999999999999999999999999999999999999999999999999999999999986422111 11
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc----
Q 017331 87 GAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG---- 162 (373)
Q Consensus 87 ~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g---- 162 (373)
...++...+.+...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 87 ~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~~a~ 166 (379)
T PLN02874 87 CLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGHLGE 166 (379)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHHHHH
Confidence 2233344456677899999999999999999999999999999999999999999999999999999999999988
Q ss_pred ---ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCC
Q 017331 163 ---FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRT 239 (373)
Q Consensus 163 ---l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 239 (373)
+||++++|+||+++|||+++||++++..+..++.++...+...+++++++|.........++.+....|.+||+.++
T Consensus 167 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 246 (379)
T PLN02874 167 YLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKDT 246 (379)
T ss_pred HHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCCC
Confidence 89999999999999999999999998777778877877888899999999876544444556667899999999999
Q ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhh
Q 017331 240 VEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAI 319 (373)
Q Consensus 240 ~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~ 319 (373)
+.||+++|+++.++.+++||.+++++|+++||.+++.+|++++.+...++.++++.|+.....++....++|++||++||
T Consensus 247 ~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~Af 326 (379)
T PLN02874 247 VEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRAL 326 (379)
T ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceE
Confidence 99999999987766678999999999999999999999999999888899999999999888887611145999999999
Q ss_pred hccCCCCCCCCCCCccCCCHHHHHhhccCCCCCCccccccCCcCCCchhh
Q 017331 320 LLDKDKNPKWKPSKLELVNDNMVDQYFSKINDDRWEDIKLPARSNLPATA 369 (373)
Q Consensus 320 l~eK~r~P~w~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (373)
++||+|.|+|+++++++|++++|++||.|++.+ ++|+||+|- .-+||
T Consensus 327 lidK~r~P~w~~~~~~~v~~~~v~~~f~~~~~~--~~~~~~~~~-~~~~~ 373 (379)
T PLN02874 327 VIDKDNAPKWNPSTLDEVTDEKVDLVFQPFKAR--EELQLPEEE-ENRWS 373 (379)
T ss_pred EEcCCCCCCCCCCChhhCCHHHHHHHhCCCCCc--cccCCCccc-cchhh
Confidence 778878999999999999999999999998655 689999985 44554
No 5
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=3.8e-67 Score=487.32 Aligned_cols=349 Identities=50% Similarity=0.871 Sum_probs=324.8
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChhHHhhhccCCChhh
Q 017331 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGDWIS 86 (373)
Q Consensus 8 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~ 86 (373)
...|+++.+|..++||||||+.+||||.+|+..+.-.|..++.++.+++||+.|+| ++||+|+|++.......++....
T Consensus 37 ~~~VL~e~~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~ 116 (401)
T KOG1684|consen 37 KDQVLVEGKGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPE 116 (401)
T ss_pred CCceEEecCCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchH
Confidence 46799999999999999999999999999999999999999999999999999996 99999999998776655555567
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc----
Q 017331 87 GAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG---- 162 (373)
Q Consensus 87 ~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g---- 162 (373)
...++...|.+...|.++.||.||.+||..+|||++|++..-||||||++.|+|||+.+|++|+.|++|+|+|++|
T Consensus 117 ~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg~lg~ 196 (401)
T KOG1684|consen 117 VKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPGYLGL 196 (401)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCccHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCH-HHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcC
Q 017331 163 ---FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDP-AVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRR 238 (373)
Q Consensus 163 ---l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 238 (373)
+||.++++.||+..||++|+|++++|..+++++....+.+| ..+.+.|++|...+.++..+.......|+.||+++
T Consensus 197 YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs~~ 276 (401)
T KOG1684|consen 197 YLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFSAN 276 (401)
T ss_pred hhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhccc
Confidence 89999999999999999999999999999999984445555 88999999999998777777788999999999999
Q ss_pred CHHHHHHHHHhcc-cccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHh
Q 017331 239 TVEEILSALESES-TNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCR 317 (373)
Q Consensus 239 ~~~ei~~~L~~~~-~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~ 317 (373)
|++|||++|++.. ++..++||++++++|.+.||.|+++|.|+++.+..+++++++..|+++..+.+.++ ||.||+|
T Consensus 277 tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~---DF~EGvR 353 (401)
T KOG1684|consen 277 TVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRG---DFCEGVR 353 (401)
T ss_pred cHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc---chhhhhh
Confidence 9999999996544 45678999999999999999999999999999999999999999999999998766 9999999
Q ss_pred hhhccCCCCCCCCCCCccCCCHHHHHhhccCCCCCCccccccCC
Q 017331 318 AILLDKDKNPKWKPSKLELVNDNMVDQYFSKINDDRWEDIKLPA 361 (373)
Q Consensus 318 a~l~eK~r~P~w~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~ 361 (373)
|.|+||++.|+|++.++++|++++|+.||.|++.. .+|++|-
T Consensus 354 A~LIDKd~~PKW~p~~l~~V~e~~Vdn~F~~~p~~--~eLklp~ 395 (401)
T KOG1684|consen 354 AVLIDKDQNPKWDPASLADVTEDEVDNYFKPLPSK--SELKLPV 395 (401)
T ss_pred heeecCCcCCCCCCcchhhcCHHHHHHhccCCCCc--ccccCch
Confidence 99999999999999999999999999999997654 7788773
No 6
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=7.8e-65 Score=492.21 Aligned_cols=331 Identities=42% Similarity=0.755 Sum_probs=291.1
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChhHHhhhccCCChhhH
Q 017331 9 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGDWISG 87 (373)
Q Consensus 9 ~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~ 87 (373)
+.|.++++|+|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.| ++||+|+|++++............
T Consensus 3 ~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (342)
T PRK05617 3 DEVLAEVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAA 82 (342)
T ss_pred ceEEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhH
Confidence 4689999999999999999999999999999999999999999999999999999 999999999987643211111111
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc-----
Q 017331 88 AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG----- 162 (373)
Q Consensus 88 ~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g----- 162 (373)
..++...+.++..+..+|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|
T Consensus 83 ~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g~~a~~ 162 (342)
T PRK05617 83 DRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGALGTY 162 (342)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhcccHHHHH
Confidence 134444556788899999999999999999999999999999999999999999999999999999999999987
Q ss_pred --ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhcc-CCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCC
Q 017331 163 --FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVN-SSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRT 239 (373)
Q Consensus 163 --l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 239 (373)
++|+.++|+||+++|||+++||++++....+++.++. ....+.++.++.+|..... ..++......|++||+..+
T Consensus 163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~ 240 (342)
T PRK05617 163 LALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAP--ASELAAQRAWIDECFAGDT 240 (342)
T ss_pred HHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCC--cchhHHHHHHHHHHhCCCC
Confidence 8999999999999999999999998876555555443 3345678889999877632 2366678899999999999
Q ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhh
Q 017331 240 VEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAI 319 (373)
Q Consensus 240 ~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~ 319 (373)
+++|+++|+++ .++||.+++++|+++||.+++.+|++++.....+++++++.|...+..++.++ |++||++||
T Consensus 241 ~~~~~~~l~~~----~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~---d~~egv~af 313 (342)
T PRK05617 241 VEDIIAALEAD----GGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSP---DFVEGVRAV 313 (342)
T ss_pred HHHHHHHHHhc----cHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC---chhhccceE
Confidence 99999999996 35899999999999999999999999999888899999999999999999755 999999999
Q ss_pred hccCCCCCCCCCCCccCCCHHHHHhhccC
Q 017331 320 LLDKDKNPKWKPSKLELVNDNMVDQYFSK 348 (373)
Q Consensus 320 l~eK~r~P~w~~~~~~~v~~~~i~~~~~~ 348 (373)
+++|+|.|+|+++++++|++++|++||+|
T Consensus 314 l~ek~r~p~~~~~~~~~~~~~~~~~~~~~ 342 (342)
T PRK05617 314 LIDKDRNPKWSPATLEDVTPEDVEAFFAP 342 (342)
T ss_pred EEcCCCCCCCCCCChHhCCHHHHHHhhCC
Confidence 65765889999999999999999999998
No 7
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-53 Score=397.97 Aligned_cols=248 Identities=29% Similarity=0.487 Sum_probs=220.3
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChhHHhhhccCCChhhHH
Q 017331 10 QVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGDWISGA 88 (373)
Q Consensus 10 ~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~~ 88 (373)
.|.++++++|++|+||||+++|++|.+|+.+|.++++.++.|++||+|||||.| ++||+|+|++++.............
T Consensus 4 ~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK05980 4 TVLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALR 83 (260)
T ss_pred eEEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHH
Confidence 588999999999999999999999999999999999999999999999999999 7999999999875432111111233
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc------
Q 017331 89 KFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG------ 162 (373)
Q Consensus 89 ~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g------ 162 (373)
.+....+.++..|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++|
T Consensus 84 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 163 (260)
T PRK05980 84 DFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALE 163 (260)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHHH
Confidence 44555567788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred --ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCH
Q 017331 163 --FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 240 (373)
Q Consensus 163 --l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 240 (373)
++|+.++|+||+++|||+++||++++.. ++.
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~--------------------------------------------- 196 (260)
T PRK05980 164 LLLTGDAFSAERALEIGLVNAVVPHEELLP--AAR--------------------------------------------- 196 (260)
T ss_pred HHHcCCccCHHHHHHcCCCCcccCHHHHHH--HHH---------------------------------------------
Confidence 7999999999999999999999887643 222
Q ss_pred HHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhhh
Q 017331 241 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 320 (373)
Q Consensus 241 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~l 320 (373)
+.+++|++.+|.+++.+|++++.....++.+.+..|...+..++.++ |++||+++|+
T Consensus 197 --------------------~~a~~la~~~p~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~e~~~af~ 253 (260)
T PRK05980 197 --------------------ALARRIIRHSPVAVAAILTAVTRGLNLSIAEGLLIESEQFARMAGSA---DLREGLAAWI 253 (260)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCh---hHHHHHHHHh
Confidence 23788999999999999999998888899999999999999999765 9999999995
Q ss_pred ccCCCCCCC
Q 017331 321 LDKDKNPKW 329 (373)
Q Consensus 321 ~eK~r~P~w 329 (373)
+| |+|+|
T Consensus 254 -~k-r~p~~ 260 (260)
T PRK05980 254 -ER-RRPAY 260 (260)
T ss_pred -cc-CCCCC
Confidence 98 78988
No 8
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.9e-53 Score=396.39 Aligned_cols=247 Identities=26% Similarity=0.437 Sum_probs=219.8
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhH
Q 017331 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISG 87 (373)
Q Consensus 8 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 87 (373)
++.|.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~--- 76 (257)
T PRK05862 3 YETILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSF---M--- 76 (257)
T ss_pred CceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccch---h---
Confidence 5668999999999999999999999999999999999999999999999999999999999999998754211 0
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc-----
Q 017331 88 AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG----- 162 (373)
Q Consensus 88 ~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g----- 162 (373)
..+...+..++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|
T Consensus 77 ~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 156 (257)
T PRK05862 77 DVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAM 156 (257)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHH
Confidence 112233345677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCC
Q 017331 163 ---FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRT 239 (373)
Q Consensus 163 ---l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 239 (373)
++|+.++|+||+++|||++++|++++.+ ++.
T Consensus 157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~-------------------------------------------- 190 (257)
T PRK05862 157 DLCLTGRMMDAAEAERAGLVSRVVPADKLLD--EAL-------------------------------------------- 190 (257)
T ss_pred HHHHhCCccCHHHHHHcCCCCEeeCHhHHHH--HHH--------------------------------------------
Confidence 7999999999999999999999887743 332
Q ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhh
Q 017331 240 VEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAI 319 (373)
Q Consensus 240 ~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~ 319 (373)
+.+++|++.+|.+++.+|++++.....++.+++..|...+..++.++ |++||+++|
T Consensus 191 ---------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~---~~~e~i~af 246 (257)
T PRK05862 191 ---------------------AAATTIASFSLPAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFATE---DQKEGMAAF 246 (257)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCh---hHHHHHHHH
Confidence 23788999999999999999999888899999999999999999655 999999999
Q ss_pred hccCCCCCCCCCC
Q 017331 320 LLDKDKNPKWKPS 332 (373)
Q Consensus 320 l~eK~r~P~w~~~ 332 (373)
+ +| |+|.|+++
T Consensus 247 ~-~k-r~p~~~~~ 257 (257)
T PRK05862 247 V-EK-RKPVFKHR 257 (257)
T ss_pred h-cc-CCCCCCCC
Confidence 5 99 88999863
No 9
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-53 Score=399.88 Aligned_cols=253 Identities=23% Similarity=0.326 Sum_probs=221.9
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhcc------
Q 017331 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGIN------ 80 (373)
Q Consensus 7 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~------ 80 (373)
.++.|.++++++|++|+||||+++|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.....
T Consensus 4 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 83 (272)
T PRK06142 4 TYESFTVELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDG 83 (272)
T ss_pred CcceEEEEecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccc
Confidence 35679999999999999999999999999999999999999999999999999999999999999998754211
Q ss_pred -CCChhhHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhh
Q 017331 81 -EGDWISGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSR 159 (373)
Q Consensus 81 -~~~~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r 159 (373)
.........+...+++++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~ 163 (272)
T PRK06142 84 LARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPR 163 (272)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHH
Confidence 0111122233445567888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcc--------ccCCCccHHHHHHcCccceecCc-CcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHH
Q 017331 160 LPG--------FFGARLDGAEMRACGLATHFVPS-SRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDV 230 (373)
Q Consensus 160 l~g--------l~G~~i~a~eA~~~GLv~~vv~~-~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (373)
++| ++|+.++|+||+++|||+++||+ +++.....
T Consensus 164 ~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~------------------------------------- 206 (272)
T PRK06142 164 IIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAH------------------------------------- 206 (272)
T ss_pred HhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHH-------------------------------------
Confidence 999 79999999999999999999996 66643222
Q ss_pred HHHhcCcCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCC
Q 017331 231 IDKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSK 310 (373)
Q Consensus 231 i~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~ 310 (373)
+++++|++.||.+++.+|+++++....++.+.+..|...+..++.++
T Consensus 207 ------------------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~--- 253 (272)
T PRK06142 207 ------------------------------ATAREIAAKSPLAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSK--- 253 (272)
T ss_pred ------------------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCc---
Confidence 23789999999999999999998888889999999999999988655
Q ss_pred cHHhhHhhhhccCCCCCCCCC
Q 017331 311 DFFEGCRAILLDKDKNPKWKP 331 (373)
Q Consensus 311 d~~egi~a~l~eK~r~P~w~~ 331 (373)
|++||+++|+ +| |.|+|++
T Consensus 254 d~~egv~af~-~k-r~p~~~~ 272 (272)
T PRK06142 254 DLTEAIAAHM-EK-RPPEFTG 272 (272)
T ss_pred cHHHHHHHHh-cC-CCCCCCC
Confidence 9999999995 88 8899974
No 10
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.9e-53 Score=396.35 Aligned_cols=258 Identities=26% Similarity=0.397 Sum_probs=227.8
Q ss_pred CCCCCCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChhHHhhhc
Q 017331 1 MASAQSQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGI 79 (373)
Q Consensus 1 M~~~~~~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~ 79 (373)
|+.-....+.|.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++....
T Consensus 3 ~~~~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~ 82 (269)
T PRK06127 3 MSSISSPTGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESR 82 (269)
T ss_pred ccccCCCCCceEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcc
Confidence 565566677899999999999999999999999999999999999999999999999999999 8999999999875421
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhh
Q 017331 80 NEGDWISGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSR 159 (373)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r 159 (373)
.. ......+....+.++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++
T Consensus 83 ~~--~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~ 160 (269)
T PRK06127 83 SD--AEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVD 160 (269)
T ss_pred cc--hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHH
Confidence 11 1122334445567788899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcc--------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHH
Q 017331 160 LPG--------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVI 231 (373)
Q Consensus 160 l~g--------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 231 (373)
++| ++|+.++|+||+++|||+++||++++.....
T Consensus 161 ~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------- 202 (269)
T PRK06127 161 LVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLETALA-------------------------------------- 202 (269)
T ss_pred HhCHHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHH--------------------------------------
Confidence 999 8999999999999999999999887744222
Q ss_pred HHhcCcCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCc
Q 017331 232 DKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKD 311 (373)
Q Consensus 232 ~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d 311 (373)
+++++|++.||.+++.+|++++.....++.+.++.|...+..++.++ |
T Consensus 203 -----------------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---d 250 (269)
T PRK06127 203 -----------------------------DYAATIAGNAPLTLRAAKRAIAELLKDEPERDMAACQALVAACFDSE---D 250 (269)
T ss_pred -----------------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCh---H
Confidence 23789999999999999999998888889999999999999999655 9
Q ss_pred HHhhHhhhhccCCCCCCCCCC
Q 017331 312 FFEGCRAILLDKDKNPKWKPS 332 (373)
Q Consensus 312 ~~egi~a~l~eK~r~P~w~~~ 332 (373)
++||+++|+ +| |.|+|+++
T Consensus 251 ~~e~~~af~-ek-r~p~~~~~ 269 (269)
T PRK06127 251 YREGRAAFM-EK-RKPVFKGR 269 (269)
T ss_pred HHHHHHHHh-cC-CCCCCCCC
Confidence 999999994 99 88999863
No 11
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.5e-53 Score=395.28 Aligned_cols=252 Identities=26% Similarity=0.382 Sum_probs=219.7
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhh
Q 017331 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWIS 86 (373)
Q Consensus 7 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 86 (373)
+++.|.++.+++|++||||||+++|++|.+|+.+|.++++.++ |+++++|||||.|++||+|+|++++...........
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 80 (262)
T PRK08140 2 MYETILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDL 80 (262)
T ss_pred CCceEEEEeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhh
Confidence 4567999999999999999999999999999999999999999 999999999999999999999998753211111111
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc----
Q 017331 87 GAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG---- 162 (373)
Q Consensus 87 ~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g---- 162 (373)
...+...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a 160 (262)
T PRK08140 81 GESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARA 160 (262)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHH
Confidence 1112222345678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcC
Q 017331 163 ----FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRR 238 (373)
Q Consensus 163 ----l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 238 (373)
++|+.++|+||+++|||+++||++++.. ++.
T Consensus 161 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------- 195 (262)
T PRK08140 161 LGLALLGEKLSAEQAEQWGLIWRVVDDAALAD--EAQ------------------------------------------- 195 (262)
T ss_pred HHHHHcCCCcCHHHHHHcCCccEeeChHHHHH--HHH-------------------------------------------
Confidence 7999999999999999999999887743 322
Q ss_pred CHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhh
Q 017331 239 TVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRA 318 (373)
Q Consensus 239 ~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a 318 (373)
+++++|++.||.+++.+|++++.....++.++++.|...+..++.++ |++||+++
T Consensus 196 ----------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~e~~~a 250 (262)
T PRK08140 196 ----------------------QLAAHLATQPTRGLALIKQAMNASATNTLDAQLDLERDLQREAGRSA---DYAEGVSA 250 (262)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcCh---hHHHHHHH
Confidence 33789999999999999999998888899999999999998888655 99999999
Q ss_pred hhccCCCCCCCCC
Q 017331 319 ILLDKDKNPKWKP 331 (373)
Q Consensus 319 ~l~eK~r~P~w~~ 331 (373)
|+ +| |+|.|++
T Consensus 251 f~-~k-r~p~~~~ 261 (262)
T PRK08140 251 FL-EK-RAPRFTG 261 (262)
T ss_pred Hh-cC-CCCCCCC
Confidence 94 88 8899975
No 12
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-52 Score=397.09 Aligned_cols=250 Identities=25% Similarity=0.366 Sum_probs=220.9
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHH
Q 017331 10 QVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAK 89 (373)
Q Consensus 10 ~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 89 (373)
.+.++++++|++|+||||++.|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.......+......
T Consensus 18 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 97 (277)
T PRK08258 18 HFLWEVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLA 97 (277)
T ss_pred ceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999998753211111122233
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccC-CcchHHHHhhhcc------
Q 017331 90 FFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFP-DIGASYFLSRLPG------ 162 (373)
Q Consensus 90 ~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p-~~g~~~~L~rl~g------ 162 (373)
+....++++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++| ++|++++|++++|
T Consensus 98 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~ 177 (277)
T PRK08258 98 FTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASE 177 (277)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHH
Confidence 444556788899999999999999999999999999999999999999999999999995 7889999999999
Q ss_pred --ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCH
Q 017331 163 --FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 240 (373)
Q Consensus 163 --l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 240 (373)
++|+.++|+||+++|||+++||++++.. .+.
T Consensus 178 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~--~a~--------------------------------------------- 210 (277)
T PRK08258 178 LLYTGRSMSAEEGERWGFFNRLVEPEELLA--EAQ--------------------------------------------- 210 (277)
T ss_pred HHHcCCCCCHHHHHHcCCCcEecCHHHHHH--HHH---------------------------------------------
Confidence 7999999999999999999999887643 222
Q ss_pred HHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhhh
Q 017331 241 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 320 (373)
Q Consensus 241 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~l 320 (373)
+.+++|++.||.+++.+|++++.....++.+.++.|...+..++.++ |++||+++|+
T Consensus 211 --------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~---d~~eg~~af~ 267 (277)
T PRK08258 211 --------------------ALARRLAAGPTFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTE---DFRRAYEAFV 267 (277)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc---hHHHHHHHHh
Confidence 23789999999999999999998888899999999999999999655 9999999995
Q ss_pred ccCCCCCCCCC
Q 017331 321 LDKDKNPKWKP 331 (373)
Q Consensus 321 ~eK~r~P~w~~ 331 (373)
+| |+|+|++
T Consensus 268 -ek-r~p~~~~ 276 (277)
T PRK08258 268 -AK-RKPVFEG 276 (277)
T ss_pred -cC-CCCCCCC
Confidence 99 8899975
No 13
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=8e-53 Score=393.78 Aligned_cols=245 Identities=25% Similarity=0.438 Sum_probs=218.8
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHH
Q 017331 9 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGA 88 (373)
Q Consensus 9 ~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 88 (373)
..|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.... . ..
T Consensus 2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~---~---~~ 75 (255)
T PRK09674 2 SELLVSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKD---L---AA 75 (255)
T ss_pred ceEEEEeECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccc---h---hh
Confidence 45888999999999999999999999999999999999999999999999999999999999999875321 0 01
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc------
Q 017331 89 KFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG------ 162 (373)
Q Consensus 89 ~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g------ 162 (373)
.+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|
T Consensus 76 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~ 155 (255)
T PRK09674 76 TLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQ 155 (255)
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 12223345677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred --ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCH
Q 017331 163 --FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 240 (373)
Q Consensus 163 --l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 240 (373)
++|+.++|+||+++|||+++||++++.. .++
T Consensus 156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~--~a~--------------------------------------------- 188 (255)
T PRK09674 156 MVLTGESITAQQAQQAGLVSEVFPPELTLE--RAL--------------------------------------------- 188 (255)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHH--HHH---------------------------------------------
Confidence 7999999999999999999999887633 222
Q ss_pred HHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhhh
Q 017331 241 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 320 (373)
Q Consensus 241 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~l 320 (373)
+.+++|++.||.+++.+|++++.....++.+.++.|...+..++.++ |++||+++|+
T Consensus 189 --------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~e~i~af~ 245 (255)
T PRK09674 189 --------------------QLASKIARHSPLALRAAKQALRQSQEVDLQAGLAQERQLFTLLAATE---DRHEGISAFL 245 (255)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCH---HHHHHHHHHh
Confidence 33789999999999999999998888889999999999999998654 9999999995
Q ss_pred ccCCCCCCCCC
Q 017331 321 LDKDKNPKWKP 331 (373)
Q Consensus 321 ~eK~r~P~w~~ 331 (373)
+| |+|+|++
T Consensus 246 -~k-r~p~~~~ 254 (255)
T PRK09674 246 -EK-RTPDFKG 254 (255)
T ss_pred -cc-CCCCCCC
Confidence 88 8999975
No 14
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-52 Score=394.63 Aligned_cols=251 Identities=27% Similarity=0.422 Sum_probs=217.6
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhH
Q 017331 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISG 87 (373)
Q Consensus 8 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 87 (373)
++.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...........
T Consensus 4 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~- 82 (263)
T PRK07799 4 GPHALVEQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKD- 82 (263)
T ss_pred CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhh-
Confidence 4569999999999999999999999999999999999999999999999999999999999999999864321111000
Q ss_pred HHH-HHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc----
Q 017331 88 AKF-FSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG---- 162 (373)
Q Consensus 88 ~~~-~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g---- 162 (373)
..+ ...+.. +..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++|
T Consensus 83 ~~~~~~~~~~-~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 161 (263)
T PRK07799 83 GSYDPSRIDA-LLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVA 161 (263)
T ss_pred hhhhhhHHHH-HHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHH
Confidence 001 111222 33468899999999999999999999999999999999999999999999999999999999999
Q ss_pred ----ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcC
Q 017331 163 ----FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRR 238 (373)
Q Consensus 163 ----l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 238 (373)
++|+.++|+||+++|||+++||++++.. +++
T Consensus 162 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------- 196 (263)
T PRK07799 162 CDLLLTGRHITAAEAKEIGLIGHVVPDGQALD--KAL------------------------------------------- 196 (263)
T ss_pred HHHHHcCCCCCHHHHHHcCCccEecCcchHHH--HHH-------------------------------------------
Confidence 7999999999999999999999988733 333
Q ss_pred CHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhh
Q 017331 239 TVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRA 318 (373)
Q Consensus 239 ~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a 318 (373)
+.+++|++.||.+++.+|++++.....++.++++.|.+.+..++.++ |++||+++
T Consensus 197 ----------------------~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~---~~~egi~a 251 (263)
T PRK07799 197 ----------------------ELAELINANGPLAVQAILRTIRETEGMHENEAFKIDTKIGIPVFLSE---DAKEGPRA 251 (263)
T ss_pred ----------------------HHHHHHHhcChHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCc---cHHHHHHH
Confidence 23789999999999999999998888889999999999999888655 99999999
Q ss_pred hhccCCCCCCCCCC
Q 017331 319 ILLDKDKNPKWKPS 332 (373)
Q Consensus 319 ~l~eK~r~P~w~~~ 332 (373)
|+ +| |+|+|+++
T Consensus 252 f~-~~-r~p~~~~~ 263 (263)
T PRK07799 252 FA-EK-RAPNFQGR 263 (263)
T ss_pred HH-cc-CCCCCCCC
Confidence 95 88 88999854
No 15
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-52 Score=392.68 Aligned_cols=247 Identities=27% Similarity=0.397 Sum_probs=219.6
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChhHHhhhccCCChhh
Q 017331 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGDWIS 86 (373)
Q Consensus 8 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~ 86 (373)
|..|.++++++|++||||||++ |++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.... ...
T Consensus 2 ~~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~----~~~ 76 (258)
T PRK09076 2 MIELDLEIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGD----KAV 76 (258)
T ss_pred ceEEEEEEECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcC----hhh
Confidence 3468999999999999999986 999999999999999999999999999999999 7999999999875321 111
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc----
Q 017331 87 GAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG---- 162 (373)
Q Consensus 87 ~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g---- 162 (373)
...+...+..++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|
T Consensus 77 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 156 (258)
T PRK09076 77 AREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWA 156 (258)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 2233444567788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcC
Q 017331 163 ----FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRR 238 (373)
Q Consensus 163 ----l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 238 (373)
++|+.++|+||+++|||+++||++++.+ ++.
T Consensus 157 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------- 191 (258)
T PRK09076 157 KRMILCGERVDAATALRIGLVEEVVEKGEARE--AAL------------------------------------------- 191 (258)
T ss_pred HHHHHcCCcCCHHHHHHCCCCceecCchhHHH--HHH-------------------------------------------
Confidence 7999999999999999999999887643 222
Q ss_pred CHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhh
Q 017331 239 TVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRA 318 (373)
Q Consensus 239 ~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a 318 (373)
+++++|++.||.+++.+|++++.....++.+.++.|...+..++.++ |++||+++
T Consensus 192 ----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~eg~~a 246 (258)
T PRK09076 192 ----------------------ALAQKVANQSPSAVAACKTLIQAARNGPRAAALALERELFVDLFDTE---DQREGVNA 246 (258)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCc---hHHHHHHH
Confidence 33789999999999999999998877889999999999999999655 99999999
Q ss_pred hhccCCCCCCCCC
Q 017331 319 ILLDKDKNPKWKP 331 (373)
Q Consensus 319 ~l~eK~r~P~w~~ 331 (373)
|+ +| |+|+|++
T Consensus 247 f~-~k-r~p~~~~ 257 (258)
T PRK09076 247 FL-EK-RAPQWKN 257 (258)
T ss_pred Hh-cC-CCCCCCC
Confidence 95 88 8899974
No 16
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-52 Score=392.12 Aligned_cols=245 Identities=28% Similarity=0.360 Sum_probs=217.7
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHH
Q 017331 9 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGA 88 (373)
Q Consensus 9 ~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 88 (373)
+.|.++++++|++|+||||+++|+||.+|+.+|.++++.++ +++|+|||||.|++||+|+|++++..... ....
T Consensus 2 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~----~~~~ 75 (255)
T PRK08150 2 SLVSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDA----GEGM 75 (255)
T ss_pred ceEEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccc----hhHH
Confidence 46889999999999999999999999999999999999987 78999999999999999999999754211 1112
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc------
Q 017331 89 KFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG------ 162 (373)
Q Consensus 89 ~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g------ 162 (373)
.+...++.++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|
T Consensus 76 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ 155 (255)
T PRK08150 76 HHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTD 155 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHH
Confidence 33445567788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred --ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCH
Q 017331 163 --FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 240 (373)
Q Consensus 163 --l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 240 (373)
++|+.++|+||+++||||++||++++.+ .+.
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~--~a~--------------------------------------------- 188 (255)
T PRK08150 156 MMLTGRVYDAQEGERLGLAQYLVPAGEALD--KAM--------------------------------------------- 188 (255)
T ss_pred HHHcCCcCCHHHHHHcCCccEeeCchHHHH--HHH---------------------------------------------
Confidence 8999999999999999999999988743 332
Q ss_pred HHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhhh
Q 017331 241 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 320 (373)
Q Consensus 241 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~l 320 (373)
+++++|++.||.+++.+|++++.....++++.+..|...+..++.+ +|++||+++|
T Consensus 189 --------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s---~d~~eg~~af- 244 (255)
T PRK08150 189 --------------------ELARRIAQNAPLTNFAVLNALPRIADMSADDGLFVESLMAAVAQSA---PEAKERLRAF- 244 (255)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHH-
Confidence 2378999999999999999999888888999999999888888855 4999999999
Q ss_pred ccCCCCCCCCC
Q 017331 321 LDKDKNPKWKP 331 (373)
Q Consensus 321 ~eK~r~P~w~~ 331 (373)
.+| |+|+|++
T Consensus 245 ~~k-r~p~~~~ 254 (255)
T PRK08150 245 LEK-KAAKVKP 254 (255)
T ss_pred hcc-CCCCCCC
Confidence 588 8999975
No 17
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=1.2e-52 Score=393.71 Aligned_cols=251 Identities=27% Similarity=0.448 Sum_probs=223.5
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChhHHhhhccCCCh
Q 017331 6 SQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGDW 84 (373)
Q Consensus 6 ~~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~ 84 (373)
|++..+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.....
T Consensus 1 ~~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~---- 76 (260)
T PRK05809 1 MELKNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNE---- 76 (260)
T ss_pred CCcceEEEEEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccCh----
Confidence 3567799999999999999999999999999999999999999999999999999999 99999999998754211
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc--
Q 017331 85 ISGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-- 162 (373)
Q Consensus 85 ~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g-- 162 (373)
.....+......++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++|
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 156 (260)
T PRK05809 77 EEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPG 156 (260)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHH
Confidence 112233344456788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcC
Q 017331 163 ------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFS 236 (373)
Q Consensus 163 ------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 236 (373)
++|+.++|+||+++|||++++|++++.. .+.
T Consensus 157 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~----------------------------------------- 193 (260)
T PRK05809 157 KAKELIYTGDMINAEEALRIGLVNKVVEPEKLME--EAK----------------------------------------- 193 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHcCCCCcccChHHHHH--HHH-----------------------------------------
Confidence 7999999999999999999999877633 222
Q ss_pred cCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhH
Q 017331 237 RRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGC 316 (373)
Q Consensus 237 ~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi 316 (373)
+.+++|++.||.+++.+|+.++.....++.++++.|.+.+..++.++ |++||+
T Consensus 194 ------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~egi 246 (260)
T PRK05809 194 ------------------------ALANKIAANAPIAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTE---DQTEGM 246 (260)
T ss_pred ------------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCH---HHHHHH
Confidence 33789999999999999999999888899999999999999999655 999999
Q ss_pred hhhhccCCCCCCCCCC
Q 017331 317 RAILLDKDKNPKWKPS 332 (373)
Q Consensus 317 ~a~l~eK~r~P~w~~~ 332 (373)
++| ++| |+|+|+++
T Consensus 247 ~af-~~~-r~p~~~~~ 260 (260)
T PRK05809 247 TAF-VEK-REKNFKNK 260 (260)
T ss_pred HHH-hcC-CCCCCCCC
Confidence 999 598 89999853
No 18
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=1.8e-52 Score=391.76 Aligned_cols=247 Identities=29% Similarity=0.410 Sum_probs=216.4
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHH
Q 017331 11 VLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKF 90 (373)
Q Consensus 11 v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 90 (373)
|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+ +|+|||||.|++||+|+|++++...... ..+....+
T Consensus 1 ~~~e~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~~~~~~ 78 (256)
T TIGR02280 1 ILSALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGG-APDLGRTI 78 (256)
T ss_pred CeEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhcccc-chhHHHHH
Confidence 467889999999999999999999999999999999999998 9999999999999999999997642111 11111122
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc--------
Q 017331 91 FSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-------- 162 (373)
Q Consensus 91 ~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g-------- 162 (373)
...+..++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 79 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~ 158 (256)
T TIGR02280 79 ETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLA 158 (256)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 222345677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCHHH
Q 017331 163 FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEE 242 (373)
Q Consensus 163 l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~e 242 (373)
++|++++|+||+++|||+++||++++.. +++
T Consensus 159 l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~----------------------------------------------- 189 (256)
T TIGR02280 159 MLGEKLDARTAASWGLIWQVVDDAALMD--EAQ----------------------------------------------- 189 (256)
T ss_pred HcCCCCCHHHHHHcCCcceeeChHHHHH--HHH-----------------------------------------------
Confidence 7999999999999999999999887643 222
Q ss_pred HHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhhhcc
Q 017331 243 ILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLD 322 (373)
Q Consensus 243 i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~l~e 322 (373)
+.+++|++.||.+++.+|+.++......+.+.++.|...+..++.++ |++||+++| .+
T Consensus 190 ------------------~~a~~la~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---d~~eg~~af-~~ 247 (256)
T TIGR02280 190 ------------------ALAVHLAAQPTRGLALTKRAIQAAATNSLDTQLDLERDLQRELGRSA---DYAEGVTAF-LD 247 (256)
T ss_pred ------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCh---hHHHHHHHH-Hc
Confidence 23789999999999999999998888889999999999999998655 999999999 49
Q ss_pred CCCCCCCCC
Q 017331 323 KDKNPKWKP 331 (373)
Q Consensus 323 K~r~P~w~~ 331 (373)
| |+|+|++
T Consensus 248 k-r~p~~~~ 255 (256)
T TIGR02280 248 K-RNPQFTG 255 (256)
T ss_pred C-CCCCCCC
Confidence 8 8999985
No 19
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-53 Score=385.90 Aligned_cols=243 Identities=29% Similarity=0.476 Sum_probs=216.8
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHH
Q 017331 11 VLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKF 90 (373)
Q Consensus 11 v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 90 (373)
++...+++|+.|+||||+++|+++..|+.+|.+++..++.|+.+.++||||.|++||+|+|++++......+-. ..
T Consensus 39 ~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~---~~- 114 (290)
T KOG1680|consen 39 ELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVS---DG- 114 (290)
T ss_pred EEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccc---cc-
Confidence 55666789999999999999999999999999999999999999999999999999999999998763221110 11
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc--------
Q 017331 91 FSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-------- 162 (373)
Q Consensus 91 ~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g-------- 162 (373)
.+.+.+..+.+.+||+||+|||+|+|||++|+++||+|||+++|+|++|+.++|++|.+|++.+|+|.+|
T Consensus 115 --~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ 192 (290)
T KOG1680|consen 115 --IFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMI 192 (290)
T ss_pred --cccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHH
Confidence 1122334455899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCHHH
Q 017331 163 FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEE 242 (373)
Q Consensus 163 l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~e 242 (373)
++|++++|+||+++|||++|||.+++ +.+++
T Consensus 193 ltg~~~~AqeA~~~GlVn~Vvp~~~~--l~eAv----------------------------------------------- 223 (290)
T KOG1680|consen 193 LTGRRLGAQEAKKIGLVNKVVPSGDA--LGEAV----------------------------------------------- 223 (290)
T ss_pred HhcCcccHHHHHhCCceeEeecchhH--HHHHH-----------------------------------------------
Confidence 89999999999999999999999986 44554
Q ss_pred HHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhhhcc
Q 017331 243 ILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLD 322 (373)
Q Consensus 243 i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~l~e 322 (373)
+++++|+++||.+++..|+.++.+.+.++.+++..|...+...+... |.+|||.+| .+
T Consensus 224 ------------------~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~---d~~Eg~~~f-~~ 281 (290)
T KOG1680|consen 224 ------------------KLAEQIAKNSPLVVRADKESVNAAYETTLFEGLELERDLFGSTFATE---DRLEGMTAF-AE 281 (290)
T ss_pred ------------------HHHHHHHhCCHHHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhhhH---HHHHHHHHh-cc
Confidence 33899999999999999999999999999999999999999999765 999999999 79
Q ss_pred CCCCCCCCC
Q 017331 323 KDKNPKWKP 331 (373)
Q Consensus 323 K~r~P~w~~ 331 (373)
| |+|+|+.
T Consensus 282 k-r~~~~~k 289 (290)
T KOG1680|consen 282 K-RKPKFSK 289 (290)
T ss_pred c-CCccccc
Confidence 9 8999984
No 20
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-52 Score=392.01 Aligned_cols=247 Identities=26% Similarity=0.444 Sum_probs=220.1
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHH
Q 017331 9 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGA 88 (373)
Q Consensus 9 ~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 88 (373)
.+|.++++++|++||||||++ |++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++...... ....
T Consensus 2 ~~i~~~~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~---~~~~ 77 (257)
T PRK07658 2 KFLSVRVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEA---EQAT 77 (257)
T ss_pred ceEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCch---hhHH
Confidence 368899999999999999986 999999999999999999999999999999999999999999987542211 1122
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc------
Q 017331 89 KFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG------ 162 (373)
Q Consensus 89 ~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g------ 162 (373)
.+....+.++..|..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|
T Consensus 78 ~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 157 (257)
T PRK07658 78 ELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALE 157 (257)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHH
Confidence 33445567788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred --ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCH
Q 017331 163 --FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 240 (373)
Q Consensus 163 --l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 240 (373)
++|+.++|+||+++|||+++||++++.+ ++.
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~--------------------------------------------- 190 (257)
T PRK07658 158 MMLTSEPITGAEALKWGLVNGVFPEETLLD--DAK--------------------------------------------- 190 (257)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecChhHHHH--HHH---------------------------------------------
Confidence 7999999999999999999999887743 222
Q ss_pred HHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhhh
Q 017331 241 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 320 (373)
Q Consensus 241 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~l 320 (373)
+++++|++.||.+++.+|++++.....++.+.++.|...+..++.++ |++||+++|+
T Consensus 191 --------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~egi~af~ 247 (257)
T PRK07658 191 --------------------KLAKKIAGKSPATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTSE---DAKEGVQAFL 247 (257)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCH---HHHHHHHHHH
Confidence 33788999999999999999998888889999999999999999655 9999999995
Q ss_pred ccCCCCCCCCC
Q 017331 321 LDKDKNPKWKP 331 (373)
Q Consensus 321 ~eK~r~P~w~~ 331 (373)
+| |+|+|++
T Consensus 248 -~k-r~p~~~~ 256 (257)
T PRK07658 248 -EK-RKPSFSG 256 (257)
T ss_pred -cC-CCCCCCC
Confidence 88 8899975
No 21
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.5e-52 Score=391.57 Aligned_cols=250 Identities=26% Similarity=0.402 Sum_probs=221.2
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChh
Q 017331 6 SQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWI 85 (373)
Q Consensus 6 ~~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 85 (373)
+..+.+.++++|+|++|+||||+++|++|.+|+.+|.++++.++.|++||+|||||.|++||+|+|++++..... ..
T Consensus 8 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~~ 84 (266)
T PRK08139 8 TEAPLLLREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARG---LA 84 (266)
T ss_pred ccCCceEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccc---hh
Confidence 346679999999999999999999999999999999999999999999999999999999999999998754211 12
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc---
Q 017331 86 SGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG--- 162 (373)
Q Consensus 86 ~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g--- 162 (373)
....++..+.+++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++| +++|+|++|
T Consensus 85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~ 163 (266)
T PRK08139 85 YFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQ 163 (266)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHH
Confidence 2234455566788899999999999999999999999999999999999999999999999999765 568999999
Q ss_pred -----ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCc
Q 017331 163 -----FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSR 237 (373)
Q Consensus 163 -----l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 237 (373)
++|+.++|+||+++||||++||++++.....
T Consensus 164 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~-------------------------------------------- 199 (266)
T PRK08139 164 AMEMLLTGEFIDAATAREWGLVNRVVPADALDAAVA-------------------------------------------- 199 (266)
T ss_pred HHHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHH--------------------------------------------
Confidence 7999999999999999999999887744222
Q ss_pred CCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHh
Q 017331 238 RTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCR 317 (373)
Q Consensus 238 ~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~ 317 (373)
+++++|++.||.+++.+|++++.....++.+.+..|...+..++.++ |++||++
T Consensus 200 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---d~~eg~~ 253 (266)
T PRK08139 200 -----------------------RLAAVIAAKSPAAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMAE---DAEEGID 253 (266)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCc---hHHHHHH
Confidence 23789999999999999999999888889999999999998888655 9999999
Q ss_pred hhhccCCCCCCCCC
Q 017331 318 AILLDKDKNPKWKP 331 (373)
Q Consensus 318 a~l~eK~r~P~w~~ 331 (373)
+|+ +| |+|+|.+
T Consensus 254 af~-~k-r~p~~~~ 265 (266)
T PRK08139 254 AFL-EK-RPPEWRG 265 (266)
T ss_pred HHh-cC-CCCCCCC
Confidence 995 88 8999975
No 22
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.6e-52 Score=392.82 Aligned_cols=251 Identities=26% Similarity=0.413 Sum_probs=219.0
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccC--CChh
Q 017331 9 DQVLEEETSFVRILTLNRPRQLNALSA-QMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINE--GDWI 85 (373)
Q Consensus 9 ~~v~~~~~~~v~~i~lnrp~~~Nal~~-~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~--~~~~ 85 (373)
+.|.++++++|++||||||+++|++|. +|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++...... ....
T Consensus 3 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (266)
T PRK09245 3 DFLLVERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPA 82 (266)
T ss_pred CceEEEEECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccch
Confidence 358999999999999999999999995 9999999999999999999999999999999999999998542110 0111
Q ss_pred hH-HHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc--
Q 017331 86 SG-AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-- 162 (373)
Q Consensus 86 ~~-~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g-- 162 (373)
.. ..+...+..++..+.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~ 162 (266)
T PRK09245 83 DIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMA 162 (266)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHH
Confidence 11 122233456778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcC
Q 017331 163 ------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFS 236 (373)
Q Consensus 163 ------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 236 (373)
++|+.++|+||+++|||+++||++++.. ++.
T Consensus 163 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~----------------------------------------- 199 (266)
T PRK09245 163 RAAEMAFTGDAIDAATALEWGLVSRVVPADQLLP--AAR----------------------------------------- 199 (266)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHH--HHH-----------------------------------------
Confidence 7999999999999999999999887743 222
Q ss_pred cCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhH
Q 017331 237 RRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGC 316 (373)
Q Consensus 237 ~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi 316 (373)
+++++|++.||.+++.+|++++.....++.+.+..|...+..++.++ |++||+
T Consensus 200 ------------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---d~~eg~ 252 (266)
T PRK09245 200 ------------------------ALAERIAANPPHALRLTKRLLREGQHASLDTLLELSAAYQALAHHTA---DHREAV 252 (266)
T ss_pred ------------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCH---hHHHHH
Confidence 23789999999999999999998888889999999999888888654 999999
Q ss_pred hhhhccCCCCCCCCC
Q 017331 317 RAILLDKDKNPKWKP 331 (373)
Q Consensus 317 ~a~l~eK~r~P~w~~ 331 (373)
++| ++| |.|.|++
T Consensus 253 ~af-~~k-r~p~~~~ 265 (266)
T PRK09245 253 DAF-LEK-RPPVFTG 265 (266)
T ss_pred HHH-HcC-CCCCCCC
Confidence 999 498 8899975
No 23
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-52 Score=391.15 Aligned_cols=248 Identities=27% Similarity=0.439 Sum_probs=221.6
Q ss_pred CcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChhHHhhhccCCChhh
Q 017331 9 DQVLEEE-TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGDWIS 86 (373)
Q Consensus 9 ~~v~~~~-~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~ 86 (373)
++|.+++ +++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus 3 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~----~~ 78 (260)
T PRK07657 3 QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNE----EQ 78 (260)
T ss_pred ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCCh----hh
Confidence 4688886 799999999999999999999999999999999999999999999999 69999999998754211 12
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc----
Q 017331 87 GAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG---- 162 (373)
Q Consensus 87 ~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g---- 162 (373)
...+...++.++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a 158 (260)
T PRK07657 79 VRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRA 158 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHH
Confidence 2344555677888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcC
Q 017331 163 ----FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRR 238 (373)
Q Consensus 163 ----l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 238 (373)
++|+.++|+||+++|||+++||++++.....
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 193 (260)
T PRK07657 159 KELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAI--------------------------------------------- 193 (260)
T ss_pred HHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHH---------------------------------------------
Confidence 7999999999999999999999888743222
Q ss_pred CHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhh
Q 017331 239 TVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRA 318 (373)
Q Consensus 239 ~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a 318 (373)
+++++|++.+|.+++.+|++++.....++.+.+..|...+..++.++ |++||+++
T Consensus 194 ----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~e~~~a 248 (260)
T PRK07657 194 ----------------------EIAEKIASNGPIAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTK---DRLEGLQA 248 (260)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCH---hHHHHHHH
Confidence 23789999999999999999998888889999999999999999655 99999999
Q ss_pred hhccCCCCCCCCCC
Q 017331 319 ILLDKDKNPKWKPS 332 (373)
Q Consensus 319 ~l~eK~r~P~w~~~ 332 (373)
|+ +| |.|+|+++
T Consensus 249 f~-~~-r~~~~~~~ 260 (260)
T PRK07657 249 FK-EK-RKPMYKGE 260 (260)
T ss_pred Hh-cC-CCCCCCCC
Confidence 95 88 88999753
No 24
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-52 Score=392.59 Aligned_cols=254 Identities=26% Similarity=0.367 Sum_probs=222.3
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCC-CceEEEEecCCCccccccChhHHhhhccCC--
Q 017331 6 SQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDS-NVKLLILKGKGRAFCAGGDVAAVVRGINEG-- 82 (373)
Q Consensus 6 ~~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~-~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~-- 82 (373)
|+|+.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+ ++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~v~~~~~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 80 (266)
T PRK05981 1 MQFKKVTLDFDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDS 80 (266)
T ss_pred CCcceEEEEeECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccc
Confidence 45788999999999999999999999999999999999999999876 499999999999999999999875422111
Q ss_pred ChhhHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc
Q 017331 83 DWISGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG 162 (373)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g 162 (373)
.......+...++.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg 160 (266)
T PRK05981 81 GGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVG 160 (266)
T ss_pred cchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhH
Confidence 00111223344567888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHh
Q 017331 163 --------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKC 234 (373)
Q Consensus 163 --------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 234 (373)
++|+.++|+||+++|||++++|++++.. +++
T Consensus 161 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~--~a~--------------------------------------- 199 (266)
T PRK05981 161 KARAMELSLLGEKLPAETALQWGLVNRVVDDAELMA--EAM--------------------------------------- 199 (266)
T ss_pred HHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHH--HHH---------------------------------------
Confidence 7999999999999999999999887733 322
Q ss_pred cCcCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHh
Q 017331 235 FSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFE 314 (373)
Q Consensus 235 f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~e 314 (373)
+++++|++.||.+++.+|++++.....++.+.++.|...+..++.++ |++|
T Consensus 200 --------------------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~---d~~e 250 (266)
T PRK05981 200 --------------------------KLAHELANGPTVALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTE---DFKE 250 (266)
T ss_pred --------------------------HHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcCh---hHHH
Confidence 23788999999999999999998878889999999999999888655 9999
Q ss_pred hHhhhhccCCCCCCCCC
Q 017331 315 GCRAILLDKDKNPKWKP 331 (373)
Q Consensus 315 gi~a~l~eK~r~P~w~~ 331 (373)
|+++|+ +| |+|+|++
T Consensus 251 ~~~af~-~k-r~~~~~~ 265 (266)
T PRK05981 251 GVGAFL-QK-RPAQFKG 265 (266)
T ss_pred HHHHHh-cC-CCCCCCC
Confidence 999995 98 8899975
No 25
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.3e-52 Score=391.29 Aligned_cols=252 Identities=25% Similarity=0.406 Sum_probs=217.8
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhh
Q 017331 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWIS 86 (373)
Q Consensus 7 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 86 (373)
+++.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++........ ..
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~~ 80 (262)
T PRK05995 2 MYETLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSD-DE 80 (262)
T ss_pred CCceEEEEeeCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCc-hh
Confidence 46779999999999999999999999999999999999999999999999999999999999999998754211111 11
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc----
Q 017331 87 GAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG---- 162 (373)
Q Consensus 87 ~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g---- 162 (373)
.......++.++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++ |++++|
T Consensus 81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~-l~~~vg~~~a 159 (262)
T PRK05995 81 NRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPY-VIRAMGERAA 159 (262)
T ss_pred hhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHH-HHHHhCHHHH
Confidence 112233456778889999999999999999999999999999999999999999999999999887765 889999
Q ss_pred ----ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcC
Q 017331 163 ----FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRR 238 (373)
Q Consensus 163 ----l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 238 (373)
++|+.++|+||+++|||+++||++++.....
T Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 194 (262)
T PRK05995 160 RRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVD--------------------------------------------- 194 (262)
T ss_pred HHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHH---------------------------------------------
Confidence 7999999999999999999999887743222
Q ss_pred CHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHH-HHHHHHHHHHHhhCCCCCcHHhhHh
Q 017331 239 TVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQC-LIREYRMVCHVMMGEVSKDFFEGCR 317 (373)
Q Consensus 239 ~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~-l~~e~~~~~~~~~~~~s~d~~egi~ 317 (373)
+++++|++.||.+++.+|++++.....++.+. ++.|...+..++.+ +|++||++
T Consensus 195 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~e~~~ 249 (262)
T PRK05995 195 ----------------------ELLAALVANSPQAVRAGKRLVRDVAGRPIDAALIADTASRIALIRAT---EEAREGVA 249 (262)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcC---HHHHHHHH
Confidence 23789999999999999999998877788888 88888888888865 49999999
Q ss_pred hhhccCCCCCCCCCC
Q 017331 318 AILLDKDKNPKWKPS 332 (373)
Q Consensus 318 a~l~eK~r~P~w~~~ 332 (373)
+|+ +| |+|+|+++
T Consensus 250 af~-~k-r~p~~~~~ 262 (262)
T PRK05995 250 AFL-EK-RKPAWRGR 262 (262)
T ss_pred HHh-cC-CCCCCCCC
Confidence 995 88 88999864
No 26
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-52 Score=390.73 Aligned_cols=245 Identities=24% Similarity=0.366 Sum_probs=213.9
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHH
Q 017331 11 VLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKF 90 (373)
Q Consensus 11 v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 90 (373)
|.++++|+|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++........ ..+
T Consensus 1 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~----~~~ 76 (255)
T PRK06563 1 VSRERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGG----FPF 76 (255)
T ss_pred CeEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccch----hhh
Confidence 4678899999999999999999999999999999999999999999999999999999999998754221111 111
Q ss_pred HHHH-HHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc-------
Q 017331 91 FSKE-FILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG------- 162 (373)
Q Consensus 91 ~~~~-~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g------- 162 (373)
.... ..+...+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|
T Consensus 77 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 156 (255)
T PRK06563 77 PEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRY 156 (255)
T ss_pred hhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHH
Confidence 1111 22233578999999999999999999999999999999999999999999999999999999999999
Q ss_pred -ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCHH
Q 017331 163 -FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVE 241 (373)
Q Consensus 163 -l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 241 (373)
++|+.++|+||+++||||++||++++.+ +++
T Consensus 157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~--~a~---------------------------------------------- 188 (255)
T PRK06563 157 LLTGDEFDAQEALRLGLVQEVVPPGEQLE--RAI---------------------------------------------- 188 (255)
T ss_pred HHcCCCcCHHHHHHcCCCcEeeCHHHHHH--HHH----------------------------------------------
Confidence 7999999999999999999999887733 333
Q ss_pred HHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhhhc
Q 017331 242 EILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILL 321 (373)
Q Consensus 242 ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~l~ 321 (373)
+.+++|++.||.+++.+|++++.....++.+.++.|...+..++.++ |++||+++|+
T Consensus 189 -------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---d~~eg~~af~- 245 (255)
T PRK06563 189 -------------------ELAERIARAAPLGVQATLASARAAVREGEAAAAAQLPPELRPLFTSE---DAKEGVQAFL- 245 (255)
T ss_pred -------------------HHHHHHHhcCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCc---hHHHHHHHHh-
Confidence 23789999999999999999998878899999999999999998654 9999999995
Q ss_pred cCCCCCCCCC
Q 017331 322 DKDKNPKWKP 331 (373)
Q Consensus 322 eK~r~P~w~~ 331 (373)
+| |.|.|++
T Consensus 246 ~k-r~p~~~~ 254 (255)
T PRK06563 246 ER-RPARFKG 254 (255)
T ss_pred cC-CCCCCCC
Confidence 98 8899975
No 27
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=3.7e-52 Score=393.32 Aligned_cols=249 Identities=23% Similarity=0.334 Sum_probs=216.1
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccC---CC----
Q 017331 11 VLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINE---GD---- 83 (373)
Q Consensus 11 v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~---~~---- 83 (373)
+..+.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...... .+
T Consensus 10 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 89 (275)
T PLN02664 10 IQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRS 89 (275)
T ss_pred EEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhh
Confidence 44455899999999999999999999999999999999999999999999999999999999987542110 00
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc-
Q 017331 84 WISGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG- 162 (373)
Q Consensus 84 ~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g- 162 (373)
......+...++.++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 169 (275)
T PLN02664 90 GERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGY 169 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCH
Confidence 0112233344566778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------ccCCCccHHHHHHcCccceecCc-CcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHh
Q 017331 163 -------FFGARLDGAEMRACGLATHFVPS-SRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKC 234 (373)
Q Consensus 163 -------l~G~~i~a~eA~~~GLv~~vv~~-~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 234 (373)
++|+.++|+||+++|||+++||+ +++.....
T Consensus 170 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~----------------------------------------- 208 (275)
T PLN02664 170 GNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVR----------------------------------------- 208 (275)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHH-----------------------------------------
Confidence 79999999999999999999995 66533211
Q ss_pred cCcCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHh
Q 017331 235 FSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFE 314 (373)
Q Consensus 235 f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~e 314 (373)
+++++|++.||.+++.+|++++.....++.+.++.|...+..++.++ |++|
T Consensus 209 --------------------------~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---d~~e 259 (275)
T PLN02664 209 --------------------------LIAEGIAAKSPLAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLVSD---DLNE 259 (275)
T ss_pred --------------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCh---hHHH
Confidence 33789999999999999999998877889999999999888888654 9999
Q ss_pred hHhhhhccCCCCCCCCC
Q 017331 315 GCRAILLDKDKNPKWKP 331 (373)
Q Consensus 315 gi~a~l~eK~r~P~w~~ 331 (373)
|+++|+ +| |+|.|++
T Consensus 260 g~~af~-ek-r~p~~~~ 274 (275)
T PLN02664 260 AVSAQI-QK-RKPVFAK 274 (275)
T ss_pred HHHHHh-cc-CCCCCCC
Confidence 999994 99 8899975
No 28
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.4e-52 Score=389.07 Aligned_cols=246 Identities=29% Similarity=0.418 Sum_probs=213.4
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChhHHhhhccCCChh
Q 017331 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGDWI 85 (373)
Q Consensus 7 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 85 (373)
+++.|.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... .
T Consensus 2 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~--~ 79 (259)
T PRK06494 2 ALPFSTVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG--W 79 (259)
T ss_pred CCceeEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch--h
Confidence 567799999999999999999999999999999999999999999999999999999 7999999999875422111 0
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc---
Q 017331 86 SGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG--- 162 (373)
Q Consensus 86 ~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g--- 162 (373)
. ...+..+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|
T Consensus 80 ~----~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 154 (259)
T PRK06494 80 P----ESGFGGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKR 154 (259)
T ss_pred h----hHHHHHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHH
Confidence 0 1112222 3345899999999999999999999999999999999999999999999999999999999999
Q ss_pred -----ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCc
Q 017331 163 -----FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSR 237 (373)
Q Consensus 163 -----l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 237 (373)
++|+.++|+||+++||||++||++++.. ++.
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~--~a~------------------------------------------ 190 (259)
T PRK06494 155 AMGMILTGRRVTAREGLELGFVNEVVPAGELLA--AAE------------------------------------------ 190 (259)
T ss_pred HHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHH--HHH------------------------------------------
Confidence 7999999999999999999999887643 222
Q ss_pred CCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHhhCCCCCcHHhh
Q 017331 238 RTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIRE--YRMVCHVMMGEVSKDFFEG 315 (373)
Q Consensus 238 ~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e--~~~~~~~~~~~~s~d~~eg 315 (373)
+++++|++.||.+++.+|++++.....++.+.++.| ...+..++.+ +|++||
T Consensus 191 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~---~d~~eg 244 (259)
T PRK06494 191 -----------------------RWADDILACSPLSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRAS---QDYIEG 244 (259)
T ss_pred -----------------------HHHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcC---ccHHHH
Confidence 237899999999999999999988888899999998 4566777755 599999
Q ss_pred HhhhhccCCCCCCCCC
Q 017331 316 CRAILLDKDKNPKWKP 331 (373)
Q Consensus 316 i~a~l~eK~r~P~w~~ 331 (373)
+++|+ +| |+|+|++
T Consensus 245 ~~af~-~k-r~p~~~~ 258 (259)
T PRK06494 245 PKAFA-EK-RPPRWKG 258 (259)
T ss_pred HHHHH-cc-CCCCCCC
Confidence 99995 88 8899975
No 29
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.8e-52 Score=388.78 Aligned_cols=246 Identities=27% Similarity=0.417 Sum_probs=218.8
Q ss_pred CCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhh
Q 017331 8 EDQVLEEE-TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWIS 86 (373)
Q Consensus 8 ~~~v~~~~-~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 86 (373)
.+.+.+++ +++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.... .
T Consensus 6 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~---~--- 79 (261)
T PRK08138 6 TDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAG---A--- 79 (261)
T ss_pred CCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccc---h---
Confidence 34577887 7899999999999999999999999999999999999999999999999999999999876421 1
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc----
Q 017331 87 GAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG---- 162 (373)
Q Consensus 87 ~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g---- 162 (373)
...+....+.++..+..+|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++|
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 159 (261)
T PRK08138 80 IEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKA 159 (261)
T ss_pred hHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHH
Confidence 1123344566788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcC
Q 017331 163 ----FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRR 238 (373)
Q Consensus 163 ----l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 238 (373)
++|+.++|+||+++|||+++||++++.. ++.
T Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------- 194 (261)
T PRK08138 160 MRMALTGCMVPAPEALAIGLVSEVVEDEQTLP--RAL------------------------------------------- 194 (261)
T ss_pred HHHHHcCCCCCHHHHHHCCCCcEecCchHHHH--HHH-------------------------------------------
Confidence 7999999999999999999999887743 332
Q ss_pred CHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhh
Q 017331 239 TVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRA 318 (373)
Q Consensus 239 ~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a 318 (373)
+++++|++.||.+++.+|++++.....++.+++..|.+.+..++.++ |++||+++
T Consensus 195 ----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~~~i~a 249 (261)
T PRK08138 195 ----------------------ELAREIARMPPLALAQIKEVVLAGADAPLDAALALERKAFQLLFDSE---DQKEGMDA 249 (261)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCH---HHHHHHHH
Confidence 22778889999999999999998888889999999999999999665 99999999
Q ss_pred hhccCCCCCCCCC
Q 017331 319 ILLDKDKNPKWKP 331 (373)
Q Consensus 319 ~l~eK~r~P~w~~ 331 (373)
| .+| |.|+|++
T Consensus 250 f-~~k-r~~~~~~ 260 (261)
T PRK08138 250 F-LEK-RKPAYKG 260 (261)
T ss_pred H-hcC-CCCCCCC
Confidence 9 498 8899975
No 30
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=3.7e-52 Score=388.34 Aligned_cols=241 Identities=26% Similarity=0.451 Sum_probs=215.8
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChhHHhhhccCCChhhHHHHHHHH
Q 017331 16 TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGDWISGAKFFSKE 94 (373)
Q Consensus 16 ~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 94 (373)
+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... .....+...+
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~----~~~~~~~~~~ 77 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSP----SEVQKFVNSL 77 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccCh----HHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999985 89999999998754211 1223445556
Q ss_pred HHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc--------ccCC
Q 017331 95 FILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG--------FFGA 166 (373)
Q Consensus 95 ~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g--------l~G~ 166 (373)
+.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++| ++|+
T Consensus 78 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~ 157 (251)
T PLN02600 78 RSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGR 157 (251)
T ss_pred HHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCC
Confidence 67788899999999999999999999999999999999999999999999999999999999999999 7999
Q ss_pred CccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCHHHHHHH
Q 017331 167 RLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEILSA 246 (373)
Q Consensus 167 ~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~~~ 246 (373)
.++|+||+++||||++||++++.. +++
T Consensus 158 ~~~a~eA~~~Glv~~vv~~~~~~~--~a~--------------------------------------------------- 184 (251)
T PLN02600 158 RIGAREAASMGLVNYCVPAGEAYE--KAL--------------------------------------------------- 184 (251)
T ss_pred ccCHHHHHHcCCCcEeeChhHHHH--HHH---------------------------------------------------
Confidence 999999999999999999887733 333
Q ss_pred HHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhhhccCCCC
Q 017331 247 LESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDKDKN 326 (373)
Q Consensus 247 L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~l~eK~r~ 326 (373)
+++++|++.||.+++.+|++++.....++.+.++.|...+..++.++ |++||+++|+ +| |+
T Consensus 185 --------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---d~~eg~~af~-ek-r~ 245 (251)
T PLN02600 185 --------------ELAQEINQKGPLAIKMAKKAINEGSEVDMASGLEIEEECYEQVLKTK---DRLEGLAAFA-EK-RK 245 (251)
T ss_pred --------------HHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCH---HHHHHHHHHh-cC-CC
Confidence 33789999999999999999998888899999999999999999665 9999999994 99 88
Q ss_pred CCCCCC
Q 017331 327 PKWKPS 332 (373)
Q Consensus 327 P~w~~~ 332 (373)
|+|+++
T Consensus 246 p~~~~~ 251 (251)
T PLN02600 246 PVYTGK 251 (251)
T ss_pred CCCCCC
Confidence 999753
No 31
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.8e-52 Score=387.31 Aligned_cols=243 Identities=26% Similarity=0.356 Sum_probs=213.4
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHH
Q 017331 9 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGA 88 (373)
Q Consensus 9 ~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 88 (373)
+.|.++++++|++|+||||+++|++|.+|+.+|.++++.++.|++||+|||||.|++||+|+|++++.... ...
T Consensus 3 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~---~~~--- 76 (254)
T PRK08252 3 DEVLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGE---RPS--- 76 (254)
T ss_pred ceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhccc---chh---
Confidence 46889999999999999999999999999999999999999999999999999999999999999886421 111
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc------
Q 017331 89 KFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG------ 162 (373)
Q Consensus 89 ~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g------ 162 (373)
.....+..+. ...+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|
T Consensus 77 ~~~~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~ 154 (254)
T PRK08252 77 IPGRGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAME 154 (254)
T ss_pred hhHHHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHH
Confidence 1111122222 24799999999999999999999999999999999999999999999999999999999999
Q ss_pred --ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCH
Q 017331 163 --FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 240 (373)
Q Consensus 163 --l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 240 (373)
++|++++|+||+++|||+++||++++.. ++.
T Consensus 155 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~--------------------------------------------- 187 (254)
T PRK08252 155 LALTGDMLTAERAHELGLVNRLTEPGQALD--AAL--------------------------------------------- 187 (254)
T ss_pred HHHcCCccCHHHHHHcCCcceecCcchHHH--HHH---------------------------------------------
Confidence 7999999999999999999999887733 222
Q ss_pred HHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhhh
Q 017331 241 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 320 (373)
Q Consensus 241 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~l 320 (373)
+++++|++.||.+++.+|++++.....++.++++.|...+..++.++ |++||+++|+
T Consensus 188 --------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~---~~~eg~~af~ 244 (254)
T PRK08252 188 --------------------ELAERIAANGPLAVAASKRIVVESGDWSEDEMFARQRELIAPVFTSA---DAKEGATAFA 244 (254)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCc---hHHHHHHHHh
Confidence 33789999999999999999998878889999999999999988655 9999999995
Q ss_pred ccCCCCCCCCC
Q 017331 321 LDKDKNPKWKP 331 (373)
Q Consensus 321 ~eK~r~P~w~~ 331 (373)
+| |+|+|++
T Consensus 245 -~k-r~p~~~~ 253 (254)
T PRK08252 245 -EK-RAPVWTG 253 (254)
T ss_pred -cC-CCCCCCC
Confidence 88 8899975
No 32
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-51 Score=387.18 Aligned_cols=249 Identities=25% Similarity=0.371 Sum_probs=220.8
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhh
Q 017331 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWIS 86 (373)
Q Consensus 7 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 86 (373)
++++|.++++++|++|+||||+++|++|.+|+.+|.++++.+ .|+++|+|||+|.|++||+|+|++++...... ..
T Consensus 4 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~---~~ 79 (260)
T PRK07659 4 KMESVVVKYEGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDE---SK 79 (260)
T ss_pred CCceEEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCc---hh
Confidence 356799999999999999999999999999999999999999 58899999999999999999999987642111 12
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc----
Q 017331 87 GAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG---- 162 (373)
Q Consensus 87 ~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g---- 162 (373)
...+...+++++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a 159 (260)
T PRK07659 80 FDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKA 159 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHH
Confidence 2344556677888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcC
Q 017331 163 ----FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRR 238 (373)
Q Consensus 163 ----l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 238 (373)
++|+.++|+||+++|||+++| ++++.. .+.
T Consensus 160 ~~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~--~a~------------------------------------------- 193 (260)
T PRK07659 160 KQIIWEGKKLSATEALDLGLIDEVI-GGDFQT--AAK------------------------------------------- 193 (260)
T ss_pred HHHHHhCCccCHHHHHHcCChHHHh-hhHHHH--HHH-------------------------------------------
Confidence 799999999999999999999 666633 222
Q ss_pred CHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhh
Q 017331 239 TVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRA 318 (373)
Q Consensus 239 ~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a 318 (373)
+++++|++.||.+++.+|++++......+.+.++.|...+..++.++ |++||+++
T Consensus 194 ----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~---~~~egi~a 248 (260)
T PRK07659 194 ----------------------QKISEWLQKPLKAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQTA---DHKEGIRA 248 (260)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCH---hHHHHHHH
Confidence 23789999999999999999998888889999999999999998655 99999999
Q ss_pred hhccCCCCCCCCCC
Q 017331 319 ILLDKDKNPKWKPS 332 (373)
Q Consensus 319 ~l~eK~r~P~w~~~ 332 (373)
|+ +| |+|+|+++
T Consensus 249 f~-~k-r~p~~~~~ 260 (260)
T PRK07659 249 FL-EK-RLPVFKGE 260 (260)
T ss_pred Hh-cC-CCCCCCCC
Confidence 95 88 88999753
No 33
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.1e-51 Score=388.10 Aligned_cols=251 Identities=25% Similarity=0.399 Sum_probs=213.6
Q ss_pred CCCcEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChh
Q 017331 7 QEDQVLEEET-SFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWI 85 (373)
Q Consensus 7 ~~~~v~~~~~-~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 85 (373)
.|+++.++++ ++|++||||||+++|++|.+|+.+|.++++.++.|++||+|||||.|++||+|+|++++...... +..
T Consensus 3 ~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~~ 81 (265)
T PRK05674 3 DFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADL-DYN 81 (265)
T ss_pred CcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccc-cch
Confidence 4778999985 78999999999999999999999999999999999999999999999999999999987542111 100
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc---
Q 017331 86 SGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG--- 162 (373)
Q Consensus 86 ~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g--- 162 (373)
........++.++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++ ++++++|
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~ 160 (265)
T PRK05674 82 TNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGERA 160 (265)
T ss_pred hhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHHH
Confidence 111222345677888999999999999999999999999999999999999999999999999987766 4888888
Q ss_pred -----ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCc
Q 017331 163 -----FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSR 237 (373)
Q Consensus 163 -----l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 237 (373)
++|+.++|+||+++|||+++||++++.. ++.
T Consensus 161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------ 196 (265)
T PRK05674 161 ARRYALTAERFDGRRARELGLLAESYPAAELEA--QVE------------------------------------------ 196 (265)
T ss_pred HHHHHHhCcccCHHHHHHCCCcceecCHHHHHH--HHH------------------------------------------
Confidence 8999999999999999999999877743 222
Q ss_pred CCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHH-HHHHHHHHhhCCCCCcHHhhH
Q 017331 238 RTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIR-EYRMVCHVMMGEVSKDFFEGC 316 (373)
Q Consensus 238 ~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~-e~~~~~~~~~~~~s~d~~egi 316 (373)
+.+++|++.||.+++.+|++++.....++.+.+.. +...+..++.+ +|++||+
T Consensus 197 -----------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s---~d~~e~~ 250 (265)
T PRK05674 197 -----------------------AWIANLLLNSPQALRASKDLLREVGDGELSPALRRYCENAIARIRVS---AEGQEGL 250 (265)
T ss_pred -----------------------HHHHHHHhcCHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhcC---HHHHHHH
Confidence 23789999999999999999999888888888765 44566667754 5999999
Q ss_pred hhhhccCCCCCCCCC
Q 017331 317 RAILLDKDKNPKWKP 331 (373)
Q Consensus 317 ~a~l~eK~r~P~w~~ 331 (373)
++|+ +| |+|+|+.
T Consensus 251 ~af~-~k-r~p~~~~ 263 (265)
T PRK05674 251 RAFL-EK-RTPAWQT 263 (265)
T ss_pred HHHH-cc-CCCCCCC
Confidence 9995 88 8899974
No 34
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-51 Score=386.23 Aligned_cols=250 Identities=26% Similarity=0.399 Sum_probs=215.3
Q ss_pred CCcEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhh
Q 017331 8 EDQVLEEET-SFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWIS 86 (373)
Q Consensus 8 ~~~v~~~~~-~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 86 (373)
++.|.++++ ++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++........ ..
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-~~ 81 (262)
T PRK07468 3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADR-AT 81 (262)
T ss_pred cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccch-hh
Confidence 566888886 6899999999999999999999999999999999999999999999999999999998754221111 11
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc----
Q 017331 87 GAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG---- 162 (373)
Q Consensus 87 ~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g---- 162 (373)
.......+..++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++ +|
T Consensus 82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~-vG~~~a 160 (262)
T PRK07468 82 RIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEANA 160 (262)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhh-ccHHHH
Confidence 1122344566788899999999999999999999999999999999999999999999999999999986655 77
Q ss_pred ----ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcC
Q 017331 163 ----FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRR 238 (373)
Q Consensus 163 ----l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 238 (373)
++|++++|+||+++|||++++|++++.....
T Consensus 161 ~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~--------------------------------------------- 195 (262)
T PRK07468 161 RRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVE--------------------------------------------- 195 (262)
T ss_pred HHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHH---------------------------------------------
Confidence 7999999999999999999999877643222
Q ss_pred CHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhh
Q 017331 239 TVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRA 318 (373)
Q Consensus 239 ~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a 318 (373)
+++++|++.||.+++.+|++++......+.+.++.|...+..++.++ |++||+++
T Consensus 196 ----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~---d~~e~~~a 250 (262)
T PRK07468 196 ----------------------AEVTPYLSCAPGAVAAAKALVRALGAPIDEAVIDATIEALADTWETE---EAREGIAA 250 (262)
T ss_pred ----------------------HHHHHHHhcCHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcCH---HHHHHHHH
Confidence 23789999999999999999988766678999999999999999655 99999999
Q ss_pred hhccCCCCCCCCC
Q 017331 319 ILLDKDKNPKWKP 331 (373)
Q Consensus 319 ~l~eK~r~P~w~~ 331 (373)
|+ +| |+|+|++
T Consensus 251 f~-~k-r~~~~~~ 261 (262)
T PRK07468 251 FF-DK-RAPAWRG 261 (262)
T ss_pred HH-cC-CCCCCCC
Confidence 95 98 8899964
No 35
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-51 Score=388.29 Aligned_cols=254 Identities=27% Similarity=0.413 Sum_probs=219.7
Q ss_pred CCCCcEEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCCh
Q 017331 6 SQEDQVLEEETS-FVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDW 84 (373)
Q Consensus 6 ~~~~~v~~~~~~-~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 84 (373)
++++.|.+++++ +|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.........
T Consensus 2 ~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~ 81 (272)
T PRK06210 2 MAYDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGR 81 (272)
T ss_pred CCcceEEEEECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCccccc
Confidence 467889999998 9999999999999999999999999999999999999999999999999999999987642211000
Q ss_pred h--hHHHH----HHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHh
Q 017331 85 I--SGAKF----FSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLS 158 (373)
Q Consensus 85 ~--~~~~~----~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~ 158 (373)
. ....+ ...+++++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~ 161 (272)
T PRK06210 82 RDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILP 161 (272)
T ss_pred ccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhH
Confidence 0 00011 11234556788999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcc--------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHH
Q 017331 159 RLPG--------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDV 230 (373)
Q Consensus 159 rl~g--------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (373)
|++| ++|+.++|+||+++||||++||++++.. ++.
T Consensus 162 ~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~--~a~----------------------------------- 204 (272)
T PRK06210 162 RLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELME--RTL----------------------------------- 204 (272)
T ss_pred hhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHH--HHH-----------------------------------
Confidence 9999 7999999999999999999999877633 222
Q ss_pred HHHhcCcCCHHHHHHHHHhcccccccHHHHHHHHHHHhc-CcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCC
Q 017331 231 IDKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKA-SPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVS 309 (373)
Q Consensus 231 i~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~-sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s 309 (373)
+.+++|++. +|.++..+|+.+++....++.+.++.|...+..++.++
T Consensus 205 ------------------------------~~a~~i~~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~-- 252 (272)
T PRK06210 205 ------------------------------AYAEDLARNVSPASMAVIKRQLYEDAFQTLAEATARANREMHESLQRP-- 252 (272)
T ss_pred ------------------------------HHHHHHHhcCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCc--
Confidence 237888885 99999999999998888899999999999998888654
Q ss_pred CcHHhhHhhhhccCCCCCCCCC
Q 017331 310 KDFFEGCRAILLDKDKNPKWKP 331 (373)
Q Consensus 310 ~d~~egi~a~l~eK~r~P~w~~ 331 (373)
|++||+++|+ +| |+|.|.+
T Consensus 253 -~~~egi~af~-~k-r~p~~~~ 271 (272)
T PRK06210 253 -DFIEGVASFL-EK-RPPRFPG 271 (272)
T ss_pred -cHHHHHHHHh-cc-CCCCCCC
Confidence 9999999994 99 8899974
No 36
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-51 Score=384.50 Aligned_cols=248 Identities=24% Similarity=0.373 Sum_probs=221.5
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHH
Q 017331 10 QVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAK 89 (373)
Q Consensus 10 ~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 89 (373)
.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|++||+|||+|.|++||+|+|++++...... .......
T Consensus 4 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~-~~~~~~~ 82 (260)
T PRK07511 4 ELLSRREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAK-PPSVQAA 82 (260)
T ss_pred eeEEEeECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccc-cchhHHH
Confidence 488899999999999999999999999999999999999999999999999999999999999987642211 1122234
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc-------
Q 017331 90 FFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG------- 162 (373)
Q Consensus 90 ~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g------- 162 (373)
+....+.++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|
T Consensus 83 ~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l 162 (260)
T PRK07511 83 SIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATEL 162 (260)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHH
Confidence 4556678888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCHH
Q 017331 163 -FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVE 241 (373)
Q Consensus 163 -l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 241 (373)
++|+.++|+||+++|||+++|+++++.+ +++
T Consensus 163 ~ltg~~~~a~eA~~~Glv~~vv~~~~~~~--~a~---------------------------------------------- 194 (260)
T PRK07511 163 LLEGKPISAERLHALGVVNRLAEPGQALA--EAL---------------------------------------------- 194 (260)
T ss_pred HHhCCCCCHHHHHHcCCccEeeCchHHHH--HHH----------------------------------------------
Confidence 7999999999999999999999887633 333
Q ss_pred HHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhhhc
Q 017331 242 EILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILL 321 (373)
Q Consensus 242 ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~l~ 321 (373)
+.+++|++.||.+++.+|+.++.....++.+.+..|...+..++.++ |+++|+++|+
T Consensus 195 -------------------~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~~~i~~f~- 251 (260)
T PRK07511 195 -------------------ALADQLAAGSPNALARIKSLIADAPEATLAAQLEAERDHFVASLHHA---DALEGIAAFL- 251 (260)
T ss_pred -------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCc---hHHHHHHHHh-
Confidence 23788999999999999999998888899999999999999999665 9999999995
Q ss_pred cCCCCCCCC
Q 017331 322 DKDKNPKWK 330 (373)
Q Consensus 322 eK~r~P~w~ 330 (373)
+| |+|.|.
T Consensus 252 ~~-r~~~~~ 259 (260)
T PRK07511 252 EK-RAPDYK 259 (260)
T ss_pred cc-CCCCCC
Confidence 88 789995
No 37
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-51 Score=386.70 Aligned_cols=253 Identities=23% Similarity=0.343 Sum_probs=214.2
Q ss_pred CCCCCCCCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhc
Q 017331 1 MASAQSQEDQVLEEE-TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGI 79 (373)
Q Consensus 1 M~~~~~~~~~v~~~~-~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~ 79 (373)
|-+...+++.|.+++ +++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++....
T Consensus 3 ~~~~~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~ 82 (268)
T PRK07327 3 MLARYADYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMA 82 (268)
T ss_pred ccccCCCCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhcc
Confidence 445566788899998 5899999999999999999999999999999999999999999999999999999999875422
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhh
Q 017331 80 NEGDWISGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSR 159 (373)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r 159 (373)
. .......++...+.++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++
T Consensus 83 ~--~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~ 160 (268)
T PRK07327 83 D--DFEVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPL 160 (268)
T ss_pred C--cHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHH
Confidence 1 11122233445567788899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcc--------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHH
Q 017331 160 LPG--------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVI 231 (373)
Q Consensus 160 l~g--------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 231 (373)
++| ++|++++|+||+++|||+++||++++.. +++
T Consensus 161 ~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------ 202 (268)
T PRK07327 161 LCGMAKAKYYLLLCEPVSGEEAERIGLVSLAVDDDELLP--KAL------------------------------------ 202 (268)
T ss_pred HhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHH--HHH------------------------------------
Confidence 999 7999999999999999999999887743 332
Q ss_pred HHhcCcCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHhhCCC
Q 017331 232 DKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRL---QGVGQCLIREYRMVCHVMMGEV 308 (373)
Q Consensus 232 ~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~---~~~~e~l~~e~~~~~~~~~~~~ 308 (373)
+++++|++.||.+++.+|++++.... ..+++.+..+. ..+.
T Consensus 203 -----------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~----~~~~--- 246 (268)
T PRK07327 203 -----------------------------EVAERLAAGSQTAIRWTKYALNNWLRMAGPTFDTSLALEF----MGFS--- 246 (268)
T ss_pred -----------------------------HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH----HHcc---
Confidence 23789999999999999999986422 23555544442 3454
Q ss_pred CCcHHhhHhhhhccCCCCCCCCC
Q 017331 309 SKDFFEGCRAILLDKDKNPKWKP 331 (373)
Q Consensus 309 s~d~~egi~a~l~eK~r~P~w~~ 331 (373)
++|++||+++| .+| |+|+|.+
T Consensus 247 ~~d~~eg~~af-~ek-r~p~~~~ 267 (268)
T PRK07327 247 GPDVREGLASL-REK-RAPDFPG 267 (268)
T ss_pred ChhHHHHHHHH-Hhc-CCCCCCC
Confidence 45999999999 498 8899975
No 38
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=4e-51 Score=386.01 Aligned_cols=248 Identities=23% Similarity=0.338 Sum_probs=213.6
Q ss_pred CCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCCh
Q 017331 5 QSQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDW 84 (373)
Q Consensus 5 ~~~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 84 (373)
...|++|.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.........
T Consensus 4 ~~~~~~i~~~~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 83 (275)
T PRK09120 4 ENRWDTVKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPE 83 (275)
T ss_pred ccccccEEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchh
Confidence 34588899999999999999999999999999999999999999999999999999999999999999987542211111
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc--
Q 017331 85 ISGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-- 162 (373)
Q Consensus 85 ~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g-- 162 (373)
..........+.++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~ 163 (275)
T PRK09120 84 ILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHR 163 (275)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHH
Confidence 111223334566788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcC
Q 017331 163 ------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFS 236 (373)
Q Consensus 163 ------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 236 (373)
++|+.++|+||+++|||+++||++++.....
T Consensus 164 ~a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------- 200 (275)
T PRK09120 164 DALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTR------------------------------------------- 200 (275)
T ss_pred HHHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHH-------------------------------------------
Confidence 8999999999999999999999988744222
Q ss_pred cCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHH--HHHhhCCCCC-cHH
Q 017331 237 RRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMV--CHVMMGEVSK-DFF 313 (373)
Q Consensus 237 ~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~--~~~~~~~~s~-d~~ 313 (373)
+++++|++.||.+++.+|++++.....++.+.++.|.... ..++. ++ |++
T Consensus 201 ------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~d~~ 253 (275)
T PRK09120 201 ------------------------ELAAKLLEKNPVVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLD---PEGGRE 253 (275)
T ss_pred ------------------------HHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhC---CHHHHH
Confidence 3378999999999999999999988888999988886543 33453 45 899
Q ss_pred hhHhhhhccC
Q 017331 314 EGCRAILLDK 323 (373)
Q Consensus 314 egi~a~l~eK 323 (373)
||+++|+ +|
T Consensus 254 eg~~afl-~k 262 (275)
T PRK09120 254 EGLKQFL-DD 262 (275)
T ss_pred HHHHHHH-hc
Confidence 9999995 77
No 39
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.1e-51 Score=384.14 Aligned_cols=248 Identities=30% Similarity=0.458 Sum_probs=222.1
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhh
Q 017331 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWIS 86 (373)
Q Consensus 7 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 86 (373)
+...|.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...... .
T Consensus 3 ~~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~---~- 78 (259)
T PRK06688 3 MVTDLLVELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPK---P- 78 (259)
T ss_pred CCCceEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcc---h-
Confidence 344589999999999999999999999999999999999999999999999999999999999999998653211 1
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc----
Q 017331 87 GAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG---- 162 (373)
Q Consensus 87 ~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g---- 162 (373)
..+...+++++..+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|
T Consensus 79 -~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a 157 (259)
T PRK06688 79 -PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARA 157 (259)
T ss_pred -HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHH
Confidence 234455677888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcC
Q 017331 163 ----FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRR 238 (373)
Q Consensus 163 ----l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 238 (373)
++|+.++|+||+++|||++++|++++.. .+.
T Consensus 158 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~--~a~------------------------------------------- 192 (259)
T PRK06688 158 AEMLLLGEPLSAEEALRIGLVNRVVPAAELDA--EAD------------------------------------------- 192 (259)
T ss_pred HHHHHhCCccCHHHHHHcCCcceecCHHHHHH--HHH-------------------------------------------
Confidence 7999999999999999999999877633 222
Q ss_pred CHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhh
Q 017331 239 TVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRA 318 (373)
Q Consensus 239 ~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a 318 (373)
+++++|++.||.+++.+|++++.....++++.+..|...+..++.++ |+++|+++
T Consensus 193 ----------------------~~a~~i~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~~~~~a 247 (259)
T PRK06688 193 ----------------------AQAAKLAAGPASALRYTKRAINAATLTELEEALAREAAGFGRLLRTP---DFREGATA 247 (259)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCH---HHHHHHHH
Confidence 23788999999999999999998888899999999999999999655 99999999
Q ss_pred hhccCCCCCCCCC
Q 017331 319 ILLDKDKNPKWKP 331 (373)
Q Consensus 319 ~l~eK~r~P~w~~ 331 (373)
|+ +| |+|+|++
T Consensus 248 f~-~~-~~p~~~~ 258 (259)
T PRK06688 248 FI-EK-RKPDFTG 258 (259)
T ss_pred HH-cC-CCCCCCC
Confidence 95 88 7899974
No 40
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.7e-51 Score=382.98 Aligned_cols=248 Identities=26% Similarity=0.393 Sum_probs=217.2
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChh
Q 017331 6 SQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWI 85 (373)
Q Consensus 6 ~~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 85 (373)
++|+.|.++++++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++....... .
T Consensus 1 ~~~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~--~ 77 (257)
T PRK06495 1 MMMSQLKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGP--G 77 (257)
T ss_pred CCcceEEEEeeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCc--h
Confidence 35678999999999999999998 59999999999999999999999999999999999999999999875421111 1
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc---
Q 017331 86 SGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG--- 162 (373)
Q Consensus 86 ~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g--- 162 (373)
....+....+.++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++|
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~ 154 (257)
T PRK06495 78 DLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSL 154 (257)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHH
Confidence 222334455677888999999999999999999999999999999999999999999999996 55778999998
Q ss_pred -----ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCc
Q 017331 163 -----FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSR 237 (373)
Q Consensus 163 -----l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 237 (373)
++|+.++|+||+++|||+++||++++.. .+.
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~--~a~------------------------------------------ 190 (257)
T PRK06495 155 TRRMMLTGYRVPAAELYRRGVIEACLPPEELMP--EAM------------------------------------------ 190 (257)
T ss_pred HHHHHHcCCeeCHHHHHHcCCcceecCHHHHHH--HHH------------------------------------------
Confidence 7999999999999999999999887743 222
Q ss_pred CCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHh
Q 017331 238 RTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCR 317 (373)
Q Consensus 238 ~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~ 317 (373)
+.+++|++.||.+++.+|++++.....++.++++.|...+..++.++ |++||++
T Consensus 191 -----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~---d~~egi~ 244 (257)
T PRK06495 191 -----------------------EIAREIASKSPLATRLAKDALNTIENMSLRDGYRYEQDITAKLAKTE---DAKEAQR 244 (257)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCh---HHHHHHH
Confidence 23789999999999999999998888899999999999999888654 9999999
Q ss_pred hhhccCCCCCCCCC
Q 017331 318 AILLDKDKNPKWKP 331 (373)
Q Consensus 318 a~l~eK~r~P~w~~ 331 (373)
+|+ +| |+|+|++
T Consensus 245 af~-~k-r~p~~~~ 256 (257)
T PRK06495 245 AFL-EK-RPPVFKG 256 (257)
T ss_pred HHh-cc-CCCCCCC
Confidence 995 98 8999985
No 41
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.2e-51 Score=386.36 Aligned_cols=255 Identities=22% Similarity=0.330 Sum_probs=215.0
Q ss_pred CCCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCC--
Q 017331 6 SQEDQVLEEE-TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEG-- 82 (373)
Q Consensus 6 ~~~~~v~~~~-~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~-- 82 (373)
++++.|.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 6 ~~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~ 85 (276)
T PRK05864 6 STMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGL 85 (276)
T ss_pred CCCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccc
Confidence 4677788987 7999999999999999999999999999999999999999999999999999999999875321100
Q ss_pred -ChhhHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccC-CcchHHHHhhh
Q 017331 83 -DWISGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFP-DIGASYFLSRL 160 (373)
Q Consensus 83 -~~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p-~~g~~~~L~rl 160 (373)
...........++.++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~ 165 (276)
T PRK05864 86 TRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRA 165 (276)
T ss_pred cchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhh
Confidence 1111112334455677888999999999999999999999999999999999999999999999997 78899999999
Q ss_pred cc--------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHH
Q 017331 161 PG--------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVID 232 (373)
Q Consensus 161 ~g--------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 232 (373)
+| ++|++++|+||+++|||+++||++++.+ ++.
T Consensus 166 vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------- 206 (276)
T PRK05864 166 IGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLD--TCY------------------------------------- 206 (276)
T ss_pred hCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHH--HHH-------------------------------------
Confidence 99 7999999999999999999999887743 322
Q ss_pred HhcCcCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccC-CHHHHHHHHHHHHH-HHhhCCCCC
Q 017331 233 KCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQ-GVGQCLIREYRMVC-HVMMGEVSK 310 (373)
Q Consensus 233 ~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~-~~~e~l~~e~~~~~-~~~~~~~s~ 310 (373)
+.+++|++.||.+++.+|++++..... ++.+.+..|..... ..+. ++
T Consensus 207 ----------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~---~~ 255 (276)
T PRK05864 207 ----------------------------AIAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLL---TA 255 (276)
T ss_pred ----------------------------HHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcc---Ch
Confidence 237899999999999999999877664 78888887765322 2444 45
Q ss_pred cHHhhHhhhhccCCCCCCCCCC
Q 017331 311 DFFEGCRAILLDKDKNPKWKPS 332 (373)
Q Consensus 311 d~~egi~a~l~eK~r~P~w~~~ 332 (373)
|++||+++|+ +| |+|+|++.
T Consensus 256 d~~e~~~af~-~k-r~p~~~~~ 275 (276)
T PRK05864 256 NFEEAVAARA-EK-RPPVFTDD 275 (276)
T ss_pred hHHHHHHHHh-cc-CCCCCCCC
Confidence 9999999995 99 88999854
No 42
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=3.7e-51 Score=382.63 Aligned_cols=245 Identities=22% Similarity=0.336 Sum_probs=206.9
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChhHHhhhccCCChhh
Q 017331 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGDWIS 86 (373)
Q Consensus 8 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~ 86 (373)
|+.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.| ++||+|+|++++.... ...
T Consensus 1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~--~~~-- 76 (256)
T TIGR03210 1 YEDILYEKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGY--DGR-- 76 (256)
T ss_pred CCceEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccc--cch--
Confidence 45689999999999999999999999999999999999999999999999999999 7999999999874311 111
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc----
Q 017331 87 GAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG---- 162 (373)
Q Consensus 87 ~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g---- 162 (373)
..+......++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|
T Consensus 77 -~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A 155 (256)
T TIGR03210 77 -GTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKA 155 (256)
T ss_pred -hHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHH
Confidence 112223456778899999999999999999999999999999999999999999999999988888999999999
Q ss_pred ----ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcC
Q 017331 163 ----FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRR 238 (373)
Q Consensus 163 ----l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 238 (373)
++|+.++|+||+++|||+++||++++.. ++.
T Consensus 156 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------- 190 (256)
T TIGR03210 156 REIWYLCRRYTAQEALAMGLVNAVVPHDQLDA--EVQ------------------------------------------- 190 (256)
T ss_pred HHHHHhCCCcCHHHHHHcCCceeeeCHHHHHH--HHH-------------------------------------------
Confidence 7899999999999999999999887743 222
Q ss_pred CHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCH-HHHHHHHHHHHHHHhhCCCCCcHHhhHh
Q 017331 239 TVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGV-GQCLIREYRMVCHVMMGEVSKDFFEGCR 317 (373)
Q Consensus 239 ~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~-~e~l~~e~~~~~~~~~~~~s~d~~egi~ 317 (373)
+++++|++.||.+++.+|++++....... .+. .|...+..++.+ +|++||++
T Consensus 191 ----------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~--~~~~~~~~~~~~---~d~~e~~~ 243 (256)
T TIGR03210 191 ----------------------KWCDEIVEKSPTAIAIAKRSFNMDTAHQRGIAG--MGMYALKLYYDT---AESREGVK 243 (256)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHhhcccchHHH--HHHHHHHHHccC---hhHHHHHH
Confidence 33789999999999999999987643321 112 234555666654 59999999
Q ss_pred hhhccCCCCCCCCC
Q 017331 318 AILLDKDKNPKWKP 331 (373)
Q Consensus 318 a~l~eK~r~P~w~~ 331 (373)
+|+ +| |+|.|++
T Consensus 244 af~-~k-r~p~~~~ 255 (256)
T TIGR03210 244 AFQ-EK-RKPEFRK 255 (256)
T ss_pred HHh-cc-CCCCCCC
Confidence 995 98 8899974
No 43
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=3.6e-51 Score=383.36 Aligned_cols=247 Identities=23% Similarity=0.350 Sum_probs=209.5
Q ss_pred CcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChhHHhhhccCCChhh
Q 017331 9 DQVLEEE-TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGDWIS 86 (373)
Q Consensus 9 ~~v~~~~-~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~ 86 (373)
+.|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........ ..
T Consensus 2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~-~~ 80 (259)
T TIGR01929 2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDD-SG 80 (259)
T ss_pred ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccch-hh
Confidence 4578888 899999999999999999999999999999999999999999999999 89999999998643211111 10
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc----
Q 017331 87 GAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG---- 162 (373)
Q Consensus 87 ~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g---- 162 (373)
.. ......++..+.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|
T Consensus 81 -~~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a 158 (259)
T TIGR01929 81 -VH-RLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKA 158 (259)
T ss_pred -HH-HHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHH
Confidence 01 112345677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcC
Q 017331 163 ----FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRR 238 (373)
Q Consensus 163 ----l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 238 (373)
++|+.++|+||+++|||+++||++++.. ++.
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------- 193 (259)
T TIGR01929 159 REIWFLCRQYDAEQALDMGLVNTVVPLADLEK--ETV------------------------------------------- 193 (259)
T ss_pred HHHHHhCCccCHHHHHHcCCcccccCHHHHHH--HHH-------------------------------------------
Confidence 7999999999999999999999887743 222
Q ss_pred CHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhh
Q 017331 239 TVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRA 318 (373)
Q Consensus 239 ~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a 318 (373)
+++++|++.||.+++.+|++++..... .......|...+..++.++ |++||+++
T Consensus 194 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~---d~~egi~a 247 (259)
T TIGR01929 194 ----------------------RWCREILQKSPMAIRMLKAALNADCDG-QAGLQELAGNATMLFYMTE---EGQEGRNA 247 (259)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHhcCc---cHHHHHHH
Confidence 237899999999999999999876443 4455556667777777654 99999999
Q ss_pred hhccCCCCCCCCC
Q 017331 319 ILLDKDKNPKWKP 331 (373)
Q Consensus 319 ~l~eK~r~P~w~~ 331 (373)
|+ +| |+|+|+.
T Consensus 248 f~-~k-r~p~~~~ 258 (259)
T TIGR01929 248 FL-EK-RQPDFSK 258 (259)
T ss_pred Hh-cc-CCCCCCC
Confidence 95 98 8899973
No 44
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.6e-51 Score=380.51 Aligned_cols=244 Identities=25% Similarity=0.407 Sum_probs=215.8
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHH
Q 017331 9 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGA 88 (373)
Q Consensus 9 ~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 88 (373)
+++.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.............
T Consensus 2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK07260 2 EHIIYEVEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLV 81 (255)
T ss_pred CceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999876432211212222
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc------
Q 017331 89 KFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG------ 162 (373)
Q Consensus 89 ~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g------ 162 (373)
.+....++++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++|
T Consensus 82 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~ 161 (255)
T PRK07260 82 KIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATH 161 (255)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHH
Confidence 33445567788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCH
Q 017331 163 --FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 240 (373)
Q Consensus 163 --l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 240 (373)
++|++++|+||+++|||+++||++++.....
T Consensus 162 l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------- 194 (255)
T PRK07260 162 LAMTGEALTAEKALEYGFVYRVAESEKLEKTCE----------------------------------------------- 194 (255)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHhHHHHHHH-----------------------------------------------
Confidence 7999999999999999999999887643222
Q ss_pred HHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhhh
Q 017331 241 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 320 (373)
Q Consensus 241 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~l 320 (373)
+.+++|++.+|.+++.+|+.++.....++.+.+..|...+..++.+ +|++||+++|+
T Consensus 195 --------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~e~~~af~ 251 (255)
T PRK07260 195 --------------------QLLKKLRRGSSNSYAAIKSLVWESFFKGWEDYAKLELALQESLAFK---EDFKEGVRAFS 251 (255)
T ss_pred --------------------HHHHHHHcCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence 2378999999999999999999888888999999999999888865 49999999995
Q ss_pred ccC
Q 017331 321 LDK 323 (373)
Q Consensus 321 ~eK 323 (373)
+|
T Consensus 252 -~k 253 (255)
T PRK07260 252 -ER 253 (255)
T ss_pred -hc
Confidence 87
No 45
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=1.2e-50 Score=380.35 Aligned_cols=244 Identities=28% Similarity=0.436 Sum_probs=212.5
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChhHHhhhccCCChhhHH
Q 017331 10 QVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGDWISGA 88 (373)
Q Consensus 10 ~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~~ 88 (373)
.+.++++++|++||||||+ .|++|.+|+.+|.++++.++.|++||+|||||.| ++||+|+|++++...... . .
T Consensus 4 ~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~-~----~ 77 (261)
T PRK03580 4 SLHTTRNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAP-D----A 77 (261)
T ss_pred eEEEEEECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcc-h----h
Confidence 5889999999999999996 5999999999999999999999999999999999 799999999987642111 1 1
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc------
Q 017331 89 KFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG------ 162 (373)
Q Consensus 89 ~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g------ 162 (373)
.+......++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|
T Consensus 78 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~ 157 (261)
T PRK03580 78 DFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANE 157 (261)
T ss_pred hhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHH
Confidence 11112234567788999999999999999999999999999999999999999999999999999999999999
Q ss_pred --ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCH
Q 017331 163 --FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 240 (373)
Q Consensus 163 --l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 240 (373)
++|+.++|+||+++|||+++||++++.. ++.
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~--------------------------------------------- 190 (261)
T PRK03580 158 MVMTGRRMDAEEALRWGIVNRVVPQAELMD--RAR--------------------------------------------- 190 (261)
T ss_pred HHHhCCccCHHHHHHcCCCcEecCHhHHHH--HHH---------------------------------------------
Confidence 7999999999999999999999888744 222
Q ss_pred HHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHH----HHHHHhhCCCCCcHHhhH
Q 017331 241 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYR----MVCHVMMGEVSKDFFEGC 316 (373)
Q Consensus 241 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~----~~~~~~~~~~s~d~~egi 316 (373)
+.+++|++.+|.+++.+|++++.....++.+.++.|.. .+..++.+ +|++||+
T Consensus 191 --------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~---~d~~e~~ 247 (261)
T PRK03580 191 --------------------ELAQQLVNSAPLAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHS---EDALEGP 247 (261)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcC---ccHHHHH
Confidence 23789999999999999999998878889999998864 56667755 4999999
Q ss_pred hhhhccCCCCCCCCC
Q 017331 317 RAILLDKDKNPKWKP 331 (373)
Q Consensus 317 ~a~l~eK~r~P~w~~ 331 (373)
++| ++| |+|+|++
T Consensus 248 ~af-~ek-r~~~~~~ 260 (261)
T PRK03580 248 RAF-AEK-RDPVWKG 260 (261)
T ss_pred HHH-hcC-CCCCCCC
Confidence 999 499 8899975
No 46
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=1e-50 Score=380.64 Aligned_cols=249 Identities=20% Similarity=0.317 Sum_probs=216.1
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecC-C-CccccccChhHHhhhccCCC
Q 017331 6 SQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGK-G-RAFCAGGDVAAVVRGINEGD 83 (373)
Q Consensus 6 ~~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~-g-~~F~aG~Dl~~~~~~~~~~~ 83 (373)
|+++.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+ +|+|||||. | ++||+|+|++++..... +
T Consensus 1 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~--~ 77 (261)
T PRK11423 1 MSMQYVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGR--D 77 (261)
T ss_pred CCccceEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccc--c
Confidence 35678999999999999999999999999999999999999999887 999999996 3 89999999998753211 1
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc-
Q 017331 84 WISGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG- 162 (373)
Q Consensus 84 ~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g- 162 (373)
...+...++.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|
T Consensus 78 ---~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~ 154 (261)
T PRK11423 78 ---PLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGF 154 (261)
T ss_pred ---HHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHH
Confidence 1233345567888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhc
Q 017331 163 -------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCF 235 (373)
Q Consensus 163 -------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 235 (373)
++|++++|+||+++||||+|||++++.....
T Consensus 155 ~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~------------------------------------------ 192 (261)
T PRK11423 155 HIVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTL------------------------------------------ 192 (261)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHH------------------------------------------
Confidence 7999999999999999999999887744222
Q ss_pred CcCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhccc-CCH-HHHHHHHHHHHHHHhhCCCCCcHH
Q 017331 236 SRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRL-QGV-GQCLIREYRMVCHVMMGEVSKDFF 313 (373)
Q Consensus 236 ~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~-~~~-~e~l~~e~~~~~~~~~~~~s~d~~ 313 (373)
+++++|++.||.+++.+|++++.... ..+ ...++.|...+..++.++ |++
T Consensus 193 -------------------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---d~~ 244 (261)
T PRK11423 193 -------------------------QMAHHISEKAPLAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSE---DYQ 244 (261)
T ss_pred -------------------------HHHHHHHhcCHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCCh---hHH
Confidence 33789999999999999999986543 344 678888888888888654 999
Q ss_pred hhHhhhhccCCCCCCCCCC
Q 017331 314 EGCRAILLDKDKNPKWKPS 332 (373)
Q Consensus 314 egi~a~l~eK~r~P~w~~~ 332 (373)
||+.+|+ +| |+|+|+++
T Consensus 245 eg~~af~-~k-r~p~~~~~ 261 (261)
T PRK11423 245 EGMNAFL-EK-RKPVFVGH 261 (261)
T ss_pred HHHHHHh-cc-CCCCCCCC
Confidence 9999995 99 89999753
No 47
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-50 Score=386.77 Aligned_cols=253 Identities=24% Similarity=0.347 Sum_probs=213.0
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhcc-C----
Q 017331 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGIN-E---- 81 (373)
Q Consensus 7 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~-~---- 81 (373)
+++.|.++++++|++|+||||+++|+||.+|+.+|.++|+.++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 2 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (296)
T PRK08260 2 TYETIRYDVADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRT 81 (296)
T ss_pred CcceEEEeeeCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhccccccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999998753110 0
Q ss_pred -------CChh-hHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcch
Q 017331 82 -------GDWI-SGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGA 153 (373)
Q Consensus 82 -------~~~~-~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~ 153 (373)
.... ....+......++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~ 161 (296)
T PRK08260 82 PVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAAS 161 (296)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcch
Confidence 0000 11122233456778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcc--------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchh
Q 017331 154 SYFLSRLPG--------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAY 225 (373)
Q Consensus 154 ~~~L~rl~g--------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (373)
+++|+|++| ++|+.++|+||+++|||+++||++++.. +++
T Consensus 162 ~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~--~a~------------------------------ 209 (296)
T PRK08260 162 SWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLP--AAR------------------------------ 209 (296)
T ss_pred hhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHH--HHH------------------------------
Confidence 999999999 7999999999999999999999877633 332
Q ss_pred hHHHHHHHhcCcCCHHHHHHHHHhcccccccHHHHHHHHHHHhc-CcchHHHHHHHHHhccc--CCHHHHHHHHHHHHHH
Q 017331 226 HWMDVIDKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKA-SPTSLKISLRSIREGRL--QGVGQCLIREYRMVCH 302 (373)
Q Consensus 226 ~~~~~i~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~-sp~a~~~~k~~l~~~~~--~~~~e~l~~e~~~~~~ 302 (373)
+.+++|++. +|.+++.+|++++.... .... ....|...+..
T Consensus 210 -----------------------------------~~a~~i~~~~~~~a~~~~K~~l~~~~~~~~~~~-~~~~e~~~~~~ 253 (296)
T PRK08260 210 -----------------------------------ALAREIADNTSPVSVALTRQMMWRMAGADHPME-AHRVDSRAIYS 253 (296)
T ss_pred -----------------------------------HHHHHHHhcCChHHHHHHHHHHHhcccCCCcHH-HHHHHHHHHHH
Confidence 237889885 99999999999987643 2333 34567777777
Q ss_pred HhhCCCCCcHHhhHhhhhccCCCCCCCCCC
Q 017331 303 VMMGEVSKDFFEGCRAILLDKDKNPKWKPS 332 (373)
Q Consensus 303 ~~~~~~s~d~~egi~a~l~eK~r~P~w~~~ 332 (373)
++.+ +|++||+++|+ +| |+|.|+++
T Consensus 254 ~~~~---~d~~egi~af~-~k-r~p~f~~~ 278 (296)
T PRK08260 254 RGRS---GDGKEGVSSFL-EK-RPAVFPGK 278 (296)
T ss_pred HccC---hhHHHHHHHHh-cC-CCCCCCCC
Confidence 7755 59999999994 98 88999976
No 48
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-50 Score=376.48 Aligned_cols=240 Identities=25% Similarity=0.398 Sum_probs=212.8
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHH
Q 017331 11 VLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKF 90 (373)
Q Consensus 11 v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 90 (373)
|.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.... ...+
T Consensus 2 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~-------~~~~ 74 (248)
T PRK06072 2 IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDF-------AIDL 74 (248)
T ss_pred eEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhh-------HHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999875311 1223
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc-------c
Q 017331 91 FSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-------F 163 (373)
Q Consensus 91 ~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g-------l 163 (373)
...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| +
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~~a~~lll 154 (248)
T PRK06072 75 RETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILV 154 (248)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhHHHHHHHH
Confidence 344567788899999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred cCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCHHHH
Q 017331 164 FGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEI 243 (373)
Q Consensus 164 ~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei 243 (373)
+|+.++|+||+++|||+++ +++ +.++.
T Consensus 155 ~g~~~~a~eA~~~Glv~~~---~~~--~~~a~------------------------------------------------ 181 (248)
T PRK06072 155 LGGEFTAEEAERWGLLKIS---EDP--LSDAE------------------------------------------------ 181 (248)
T ss_pred hCCccCHHHHHHCCCcccc---chH--HHHHH------------------------------------------------
Confidence 9999999999999999953 233 22222
Q ss_pred HHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhhhccC
Q 017331 244 LSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDK 323 (373)
Q Consensus 244 ~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~l~eK 323 (373)
+.+++|++.||.+++.+|++++.....++++.++.|...+..++.++ |++||+++|+ +|
T Consensus 182 -----------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~---d~~eg~~af~-~k 240 (248)
T PRK06072 182 -----------------EMANRISNGPFQSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKTE---DFKEGISSFK-EK 240 (248)
T ss_pred -----------------HHHHHHHhCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCCh---hHHHHHHHHh-cC
Confidence 33789999999999999999998878889999999999998888655 9999999995 88
Q ss_pred CCCCCCCCC
Q 017331 324 DKNPKWKPS 332 (373)
Q Consensus 324 ~r~P~w~~~ 332 (373)
|+|+|+++
T Consensus 241 -r~p~~~~~ 248 (248)
T PRK06072 241 -REPKFKGI 248 (248)
T ss_pred -CCCCCCCC
Confidence 88999853
No 49
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-50 Score=379.95 Aligned_cols=245 Identities=27% Similarity=0.402 Sum_probs=211.5
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChhHHhhhccCCChhh
Q 017331 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGDWIS 86 (373)
Q Consensus 8 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~ 86 (373)
.+.|.++++|+|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++...... +.
T Consensus 7 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~---~~ 83 (262)
T PRK06144 7 TDELLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTA---ED 83 (262)
T ss_pred CCceEEEeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccch---hH
Confidence 45689999999999999999999999999999999999999999999999999999 799999999987542111 11
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEeccccc-ccccCCcchHHHHhhhcc---
Q 017331 87 GAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETA-LGLFPDIGASYFLSRLPG--- 162 (373)
Q Consensus 87 ~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~-~G~~p~~g~~~~L~rl~g--- 162 (373)
...+...+..++..+.++||||||+|||+|+|||++|+++||||||+++++|++||++ +|++|++|++++|++++|
T Consensus 84 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~ 163 (262)
T PRK06144 84 AVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAAR 163 (262)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHH
Confidence 2233445567788899999999999999999999999999999999999999999997 999999999999999999
Q ss_pred -----ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCc
Q 017331 163 -----FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSR 237 (373)
Q Consensus 163 -----l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 237 (373)
++|+.++|+||+++|||+++||++++.. +++
T Consensus 164 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------ 199 (262)
T PRK06144 164 VKDMLFTARLLEAEEALAAGLVNEVVEDAALDA--RAD------------------------------------------ 199 (262)
T ss_pred HHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHH--HHH------------------------------------------
Confidence 8999999999999999999999877643 222
Q ss_pred CCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHh
Q 017331 238 RTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCR 317 (373)
Q Consensus 238 ~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~ 317 (373)
+++++|++.||.+++.+|+.++......+ ..+.+.+..++.+ +|++||++
T Consensus 200 -----------------------~~a~~i~~~~~~a~~~~K~~l~~~~~~~l----~~~~~~~~~~~~~---~~~~e~~~ 249 (262)
T PRK06144 200 -----------------------ALAELLAAHAPLTLRATKEALRRLRREGL----PDGDDLIRMCYMS---EDFREGVE 249 (262)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHHhhhcCH----HHHHHHHHHHhcC---hHHHHHHH
Confidence 33789999999999999999987655444 4445566677755 49999999
Q ss_pred hhhccCCCCCCCCC
Q 017331 318 AILLDKDKNPKWKP 331 (373)
Q Consensus 318 a~l~eK~r~P~w~~ 331 (373)
+|+ +| |+|+|++
T Consensus 250 af~-~k-r~p~~~~ 261 (262)
T PRK06144 250 AFL-EK-RPPKWKG 261 (262)
T ss_pred HHh-cC-CCCCCCC
Confidence 995 88 8899975
No 50
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-50 Score=379.62 Aligned_cols=248 Identities=25% Similarity=0.362 Sum_probs=215.6
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhH
Q 017331 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISG 87 (373)
Q Consensus 8 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 87 (373)
++.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... ......
T Consensus 2 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~ 80 (262)
T PRK07509 2 MDRVSVTIEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPG-NAVKLL 80 (262)
T ss_pred CceEEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccc-hhhhhH
Confidence 5678999999999999999999999999999999999999999999999999999999999999998764311 111111
Q ss_pred HH----HHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc-
Q 017331 88 AK----FFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG- 162 (373)
Q Consensus 88 ~~----~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g- 162 (373)
.. ....+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 160 (262)
T PRK07509 81 FKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRK 160 (262)
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCH
Confidence 11 1123345667788999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhc
Q 017331 163 -------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCF 235 (373)
Q Consensus 163 -------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 235 (373)
++|+.++|+||+++|||+++|++ +. .++.
T Consensus 161 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~--~~--~~a~---------------------------------------- 196 (262)
T PRK07509 161 DVARELTYTARVFSAEEALELGLVTHVSDD--PL--AAAL---------------------------------------- 196 (262)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCChhhhhch--HH--HHHH----------------------------------------
Confidence 79999999999999999999953 31 1222
Q ss_pred CcCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhh
Q 017331 236 SRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEG 315 (373)
Q Consensus 236 ~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~eg 315 (373)
+++++|++.||.+++.+|++++.....++.+.+..|.+.+..++.++ |++||
T Consensus 197 -------------------------~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---d~~e~ 248 (262)
T PRK07509 197 -------------------------ALAREIAQRSPDAIAAAKRLINRSWTASVRALLARESVEQIRLLLGK---NQKIA 248 (262)
T ss_pred -------------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCh---hHHHH
Confidence 33789999999999999999998888889999999999999988655 99999
Q ss_pred HhhhhccCCCCCCCC
Q 017331 316 CRAILLDKDKNPKWK 330 (373)
Q Consensus 316 i~a~l~eK~r~P~w~ 330 (373)
+++|+ +| |+|.|+
T Consensus 249 ~~af~-ek-r~p~~~ 261 (262)
T PRK07509 249 VKAQM-KK-RAPKFL 261 (262)
T ss_pred HHHHh-cC-CCCCCC
Confidence 99995 98 889996
No 51
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-50 Score=378.08 Aligned_cols=240 Identities=24% Similarity=0.361 Sum_probs=212.4
Q ss_pred CCcEEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChhHHhhhccCCChh
Q 017331 8 EDQVLEE-ETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGDWI 85 (373)
Q Consensus 8 ~~~v~~~-~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 85 (373)
..++.++ .+++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.... ..
T Consensus 5 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~----~~ 80 (256)
T PRK06143 5 NAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLD----QA 80 (256)
T ss_pred cccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcC----hh
Confidence 3456677 4689999999999999999999999999999999999999999999999 7999999999875421 11
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc---
Q 017331 86 SGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG--- 162 (373)
Q Consensus 86 ~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g--- 162 (373)
....+...++.++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ |++|++++|++++|
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~ 159 (256)
T PRK06143 81 SAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWAR 159 (256)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHH
Confidence 22344555677888999999999999999999999999999999999999999999999998 88888999999999
Q ss_pred -----ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCc
Q 017331 163 -----FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSR 237 (373)
Q Consensus 163 -----l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 237 (373)
++|+.++|+||+++||||++||++++.....
T Consensus 160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 195 (256)
T PRK06143 160 TRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVE-------------------------------------------- 195 (256)
T ss_pred HHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHH--------------------------------------------
Confidence 8999999999999999999999887744222
Q ss_pred CCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHh
Q 017331 238 RTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCR 317 (373)
Q Consensus 238 ~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~ 317 (373)
+++++|+..||.+++.+|++++.....++.+.+..|...+..++.++ |++||++
T Consensus 196 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~---d~~e~~~ 249 (256)
T PRK06143 196 -----------------------RLAASLAGCGPQALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTG---EPQRHMA 249 (256)
T ss_pred -----------------------HHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcCh---HHHHHHH
Confidence 33789999999999999999998888889999999999999988655 9999999
Q ss_pred hhhccC
Q 017331 318 AILLDK 323 (373)
Q Consensus 318 a~l~eK 323 (373)
+|+ +|
T Consensus 250 af~-ek 254 (256)
T PRK06143 250 AFL-NR 254 (256)
T ss_pred HHH-hh
Confidence 995 88
No 52
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=2.2e-50 Score=380.76 Aligned_cols=249 Identities=23% Similarity=0.385 Sum_probs=211.9
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChhHHhhhccCCChh
Q 017331 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGDWI 85 (373)
Q Consensus 7 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 85 (373)
+++.|.++++++|++|+||||+++|++|.+|+.+|.++++.++.|++||+|||||.| ++||+|+|++++...... ...
T Consensus 11 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~-~~~ 89 (273)
T PRK07396 11 EYEDILYKSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYV-DDD 89 (273)
T ss_pred CCcceEEEecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhccccc-chh
Confidence 467799999999999999999999999999999999999999999999999999999 699999999987432110 111
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc---
Q 017331 86 SGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG--- 162 (373)
Q Consensus 86 ~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g--- 162 (373)
.... + ....++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|
T Consensus 90 ~~~~-~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~ 167 (273)
T PRK07396 90 GVPR-L-NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKK 167 (273)
T ss_pred hhhh-h-HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHH
Confidence 1111 1 2335667889999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCc
Q 017331 163 -----FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSR 237 (373)
Q Consensus 163 -----l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 237 (373)
++|+.++|+||+++|||++|||++++.. ++.
T Consensus 168 a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~--~a~------------------------------------------ 203 (273)
T PRK07396 168 AREIWFLCRQYDAQEALDMGLVNTVVPLADLEK--ETV------------------------------------------ 203 (273)
T ss_pred HHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHH--HHH------------------------------------------
Confidence 7999999999999999999999887743 222
Q ss_pred CCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHh
Q 017331 238 RTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCR 317 (373)
Q Consensus 238 ~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~ 317 (373)
+++++|++.||.+++.+|++++.... .+....+.|...+..++.+ +|++||++
T Consensus 204 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~---~d~~egi~ 256 (273)
T PRK07396 204 -----------------------RWCREMLQNSPMALRCLKAALNADCD-GQAGLQELAGNATMLFYMT---EEAQEGRN 256 (273)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhcC---hhHHHHHH
Confidence 23789999999999999999987644 4555555677777777765 49999999
Q ss_pred hhhccCCCCCCCCC
Q 017331 318 AILLDKDKNPKWKP 331 (373)
Q Consensus 318 a~l~eK~r~P~w~~ 331 (373)
+|+ +| |+|+|++
T Consensus 257 af~-~k-r~p~~~~ 268 (273)
T PRK07396 257 AFN-EK-RQPDFSK 268 (273)
T ss_pred HHh-CC-CCCCCCC
Confidence 995 88 8899985
No 53
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=4.7e-50 Score=373.95 Aligned_cols=239 Identities=28% Similarity=0.372 Sum_probs=206.4
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHH
Q 017331 11 VLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKF 90 (373)
Q Consensus 11 v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 90 (373)
|.++++++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++... .....
T Consensus 3 v~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~-------~~~~~ 74 (251)
T TIGR03189 3 VWLERDGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPD-------QCAAM 74 (251)
T ss_pred EEEEeeCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCch-------hHHHH
Confidence 778899999999999997 5999999999999999999999999999999999999999999975311 11223
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc--------
Q 017331 91 FSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-------- 162 (373)
Q Consensus 91 ~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g-------- 162 (373)
......++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+ |++++|++++|
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~ 153 (251)
T TIGR03189 75 LASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLL 153 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHH
Confidence 344566788899999999999999999999999999999999999999999999999987 46789999999
Q ss_pred ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCHHH
Q 017331 163 FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEE 242 (373)
Q Consensus 163 l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~e 242 (373)
++|++++|+||+++|||++++|+.+ ..++.
T Consensus 154 ltg~~~~a~eA~~~Glv~~v~~~~~----~~a~~---------------------------------------------- 183 (251)
T TIGR03189 154 YSGRSIDGAEGARIGLANAVAEDPE----NAALA---------------------------------------------- 183 (251)
T ss_pred HcCCCCCHHHHHHCCCcceecCcHH----HHHHH----------------------------------------------
Confidence 7999999999999999999998532 12220
Q ss_pred HHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHH-HHHHHHHHHhhCCCCCcHHhhHhhhhc
Q 017331 243 ILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLI-REYRMVCHVMMGEVSKDFFEGCRAILL 321 (373)
Q Consensus 243 i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~-~e~~~~~~~~~~~~s~d~~egi~a~l~ 321 (373)
.++++|++.||.+++.+|++++.....++.+.+. .|...+..++.+ +|++||+++|+
T Consensus 184 ------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s---~d~~eg~~af~- 241 (251)
T TIGR03189 184 ------------------WFDEHPAKLSASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMAT---HDAVEGLNAFL- 241 (251)
T ss_pred ------------------HHHHHHHhCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCC---HhHHHHHHHHH-
Confidence 1157899999999999999999887778887764 677777778865 59999999995
Q ss_pred cCCCCCCCCC
Q 017331 322 DKDKNPKWKP 331 (373)
Q Consensus 322 eK~r~P~w~~ 331 (373)
+| |+|.|.+
T Consensus 242 ek-r~p~~~~ 250 (251)
T TIGR03189 242 EK-RPALWED 250 (251)
T ss_pred hc-CCCCCCC
Confidence 99 8899975
No 54
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-50 Score=376.33 Aligned_cols=241 Identities=25% Similarity=0.310 Sum_probs=207.3
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHH
Q 017331 9 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGA 88 (373)
Q Consensus 9 ~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 88 (373)
+.|.++++|+|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... . ...
T Consensus 3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~--~--~~~ 78 (254)
T PRK08259 3 MSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRG--N--RLH 78 (254)
T ss_pred ceEEEEEECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccc--h--hhh
Confidence 458899999999999999999999999999999999999999999999999999999999999998754211 1 001
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc------
Q 017331 89 KFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG------ 162 (373)
Q Consensus 89 ~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g------ 162 (373)
.. ....+...+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|
T Consensus 79 ~~--~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ 156 (254)
T PRK08259 79 PS--GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMD 156 (254)
T ss_pred hh--hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHH
Confidence 00 0011122234799999999999999999999999999999999999999999999999999999999999
Q ss_pred --ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCH
Q 017331 163 --FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 240 (373)
Q Consensus 163 --l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 240 (373)
++|+.++|+||+++||||+|||++++.. .+.
T Consensus 157 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~--------------------------------------------- 189 (254)
T PRK08259 157 LILTGRPVDADEALAIGLANRVVPKGQARA--AAE--------------------------------------------- 189 (254)
T ss_pred HHHcCCccCHHHHHHcCCCCEeeChhHHHH--HHH---------------------------------------------
Confidence 7999999999999999999999988744 222
Q ss_pred HHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhhh
Q 017331 241 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 320 (373)
Q Consensus 241 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~l 320 (373)
+++++|++.||.+++.+|++++.....++.+.+..|...+...+. + |++||++||+
T Consensus 190 --------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~---d~~egi~af~ 245 (254)
T PRK08259 190 --------------------ELAAELAAFPQTCLRADRLSALEQWGLPEEAALANEFAHGLAVLA-A---EALEGAARFA 245 (254)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-h---HHHHHHHHHH
Confidence 237899999999999999999988778899999999887777774 4 9999999996
Q ss_pred ccCCCCC
Q 017331 321 LDKDKNP 327 (373)
Q Consensus 321 ~eK~r~P 327 (373)
+|+++|
T Consensus 246 -~~~~~~ 251 (254)
T PRK08259 246 -AGAGRH 251 (254)
T ss_pred -hhhccc
Confidence 775655
No 55
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=5.3e-50 Score=375.28 Aligned_cols=246 Identities=30% Similarity=0.502 Sum_probs=215.8
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhh
Q 017331 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWIS 86 (373)
Q Consensus 7 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 86 (373)
.+..+.++..++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++.+.. .. ....
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~-~~--~~~~ 79 (257)
T COG1024 3 TYETILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLS-PE--DGNA 79 (257)
T ss_pred CCCeeEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhc-cc--chhH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999875 11 1111
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc----
Q 017331 87 GAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG---- 162 (373)
Q Consensus 87 ~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g---- 162 (373)
...++...+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a 159 (257)
T COG1024 80 AENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRA 159 (257)
T ss_pred HHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHH
Confidence 2245666778999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred ----ccCCCccHHHHHHcCccceecCc-CcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCc
Q 017331 163 ----FFGARLDGAEMRACGLATHFVPS-SRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSR 237 (373)
Q Consensus 163 ----l~G~~i~a~eA~~~GLv~~vv~~-~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 237 (373)
+||+.++++||+++|||+++|+. +++.....
T Consensus 160 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~-------------------------------------------- 195 (257)
T COG1024 160 KELLLTGEPISAAEALELGLVDEVVPDAEELLERAL-------------------------------------------- 195 (257)
T ss_pred HHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHH--------------------------------------------
Confidence 79999999999999999999985 46633222
Q ss_pred CCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHh
Q 017331 238 RTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCR 317 (373)
Q Consensus 238 ~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~ 317 (373)
+++++++. +|.++..+|+.++......+.+.+..|...+...+.+ +|++||++
T Consensus 196 -----------------------~~a~~~a~-~~~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~d~~eg~~ 248 (257)
T COG1024 196 -----------------------ELARRLAA-PPLALAATKRLVRAALEADLAEALEAEALAFARLFSS---EDFREGVR 248 (257)
T ss_pred -----------------------HHHHHHcc-CHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcC---hhHHHHHH
Confidence 22566655 9999999999999887766999999999998886654 59999999
Q ss_pred hhhccCCCCCCC
Q 017331 318 AILLDKDKNPKW 329 (373)
Q Consensus 318 a~l~eK~r~P~w 329 (373)
+|+ + |+|.|
T Consensus 249 a~~-~--r~p~~ 257 (257)
T COG1024 249 AFL-E--RKPVF 257 (257)
T ss_pred HHH-c--cCCCC
Confidence 995 5 67987
No 56
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=9.2e-50 Score=374.81 Aligned_cols=247 Identities=27% Similarity=0.411 Sum_probs=213.3
Q ss_pred CCCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCCh
Q 017331 6 SQEDQVLEEE-TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDW 84 (373)
Q Consensus 6 ~~~~~v~~~~-~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 84 (373)
...+.|.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... ...
T Consensus 6 ~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~ 84 (265)
T PLN02888 6 VSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFK-GDV 84 (265)
T ss_pred CCCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhcc-chh
Confidence 3455688886 79999999999999999999999999999999999999999999999999999999998653211 110
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc--
Q 017331 85 ISGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-- 162 (373)
Q Consensus 85 ~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g-- 162 (373)
. .....++..|..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|
T Consensus 85 ---~---~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 158 (265)
T PLN02888 85 ---K---DVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGAN 158 (265)
T ss_pred ---h---HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHH
Confidence 1 11244566788999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcC
Q 017331 163 ------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFS 236 (373)
Q Consensus 163 ------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 236 (373)
++|+.++|+||+++|||+++||++++.+ ++.
T Consensus 159 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~--~a~----------------------------------------- 195 (265)
T PLN02888 159 RAREVSLTAMPLTAETAERWGLVNHVVEESELLK--KAR----------------------------------------- 195 (265)
T ss_pred HHHHHHHhCCccCHHHHHHcCCccEeeChHHHHH--HHH-----------------------------------------
Confidence 7999999999999999999999887643 222
Q ss_pred cCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhH
Q 017331 237 RRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGC 316 (373)
Q Consensus 237 ~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi 316 (373)
+++++|++.+|.+++.+|++++.....++.+.+..|...+..++.. .++|++||+
T Consensus 196 ------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~-~~~d~~e~~ 250 (265)
T PLN02888 196 ------------------------EVAEAIIKNNQGMVLRYKSVINDGLKLDLGHALQLEKERAHDYYNG-MTKEQFQKM 250 (265)
T ss_pred ------------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc-CCHHHHHHH
Confidence 3378999999999999999999888888999999998877777531 246999999
Q ss_pred hhhhccCCCCCCC
Q 017331 317 RAILLDKDKNPKW 329 (373)
Q Consensus 317 ~a~l~eK~r~P~w 329 (373)
++|+ +| |+|+=
T Consensus 251 ~af~-ek-r~~~~ 261 (265)
T PLN02888 251 QEFI-AG-RSSKK 261 (265)
T ss_pred HHHH-hc-CCCCC
Confidence 9995 88 77763
No 57
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.7e-50 Score=374.75 Aligned_cols=248 Identities=25% Similarity=0.364 Sum_probs=216.9
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhH
Q 017331 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISG 87 (373)
Q Consensus 8 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 87 (373)
...+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...... ..+..
T Consensus 5 ~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~~~ 83 (260)
T PRK07827 5 DTLVRYAVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGD-PYDAA 83 (260)
T ss_pred CcceEEEeeCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccC-chhHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999987542111 11112
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc-----
Q 017331 88 AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG----- 162 (373)
Q Consensus 88 ~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g----- 162 (373)
..+...+.+++..+..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++++++++
T Consensus 84 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~~ 163 (260)
T PRK07827 84 VARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAAR 163 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhHHHHHH
Confidence 234455677888999999999999999999999999999999999999999999999999999999999999877
Q ss_pred --ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCH
Q 017331 163 --FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 240 (373)
Q Consensus 163 --l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 240 (373)
++|+.++|+||+++|||++++++ +.. .+.
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~v~~~--l~~--~a~--------------------------------------------- 194 (260)
T PRK07827 164 YYLTGEKFGAAEAARIGLVTAAADD--VDA--AVA--------------------------------------------- 194 (260)
T ss_pred HHHhCCccCHHHHHHcCCcccchHH--HHH--HHH---------------------------------------------
Confidence 79999999999999999998752 422 111
Q ss_pred HHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhhh
Q 017331 241 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 320 (373)
Q Consensus 241 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~l 320 (373)
+++++|++.||.+++.+|+++++.....+.+.++.|...+..++.++ |++||+++|
T Consensus 195 --------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~af- 250 (260)
T PRK07827 195 --------------------ALLADLRRGSPQGLAESKALTTAAVLAGFDRDAEELTEESARLFVSD---EAREGMTAF- 250 (260)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCh---hHHHHHHHH-
Confidence 33789999999999999999999888899999999999998888654 999999999
Q ss_pred ccCCCCCCCC
Q 017331 321 LDKDKNPKWK 330 (373)
Q Consensus 321 ~eK~r~P~w~ 330 (373)
.+| |.|+|+
T Consensus 251 ~~k-r~p~~~ 259 (260)
T PRK07827 251 LQK-RPPRWA 259 (260)
T ss_pred hcC-CCCCCC
Confidence 488 789995
No 58
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.7e-50 Score=373.82 Aligned_cols=237 Identities=24% Similarity=0.346 Sum_probs=210.3
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHH
Q 017331 9 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGA 88 (373)
Q Consensus 9 ~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 88 (373)
+.|.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++....... ..
T Consensus 3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~----~~ 78 (249)
T PRK05870 3 DPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRP----AE 78 (249)
T ss_pred ccEEEEccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccc----hH
Confidence 45889999999999999999999999999999999999999999999999999999999999999986532111 12
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc------
Q 017331 89 KFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG------ 162 (373)
Q Consensus 89 ~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g------ 162 (373)
..+...+.++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|
T Consensus 79 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~ 158 (249)
T PRK05870 79 DGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARA 158 (249)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHH
Confidence 33445556677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred --ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCH
Q 017331 163 --FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 240 (373)
Q Consensus 163 --l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 240 (373)
++|+.++|+||+++|||+++| +++.. ++.
T Consensus 159 l~ltg~~~~a~eA~~~Glv~~vv--~~l~~--~a~--------------------------------------------- 189 (249)
T PRK05870 159 ALLFGMRFDAEAAVRHGLALMVA--DDPVA--AAL--------------------------------------------- 189 (249)
T ss_pred HHHhCCccCHHHHHHcCCHHHHH--hhHHH--HHH---------------------------------------------
Confidence 799999999999999999999 45532 222
Q ss_pred HHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhh
Q 017331 241 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRL-QGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAI 319 (373)
Q Consensus 241 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~-~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~ 319 (373)
+++++|++.||.+++.+|++++.... .++.+.++.|...+...+.++ |++||+++|
T Consensus 190 --------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~---d~~eg~~af 246 (249)
T PRK05870 190 --------------------ELAAGPAAAPRELVLATKASMRATASLAQHAAAVEFELGPQAASVQSP---EFAARLAAA 246 (249)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcCh---hHHHHHHHH
Confidence 33789999999999999999998877 789999999999999888655 999999999
Q ss_pred hcc
Q 017331 320 LLD 322 (373)
Q Consensus 320 l~e 322 (373)
+ +
T Consensus 247 ~-~ 248 (249)
T PRK05870 247 Q-R 248 (249)
T ss_pred h-c
Confidence 5 5
No 59
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-49 Score=371.43 Aligned_cols=238 Identities=23% Similarity=0.379 Sum_probs=208.2
Q ss_pred CcEEEEEeCC---EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChh
Q 017331 9 DQVLEEETSF---VRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWI 85 (373)
Q Consensus 9 ~~v~~~~~~~---v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 85 (373)
+.|.++++++ |++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...... .
T Consensus 3 ~~i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~-~-- 79 (251)
T PRK06023 3 DHILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMG-G-- 79 (251)
T ss_pred ceEEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhcccc-c--
Confidence 3588888874 999999999999999999999999999999999999999999999999999999987642111 1
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc---
Q 017331 86 SGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG--- 162 (373)
Q Consensus 86 ~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g--- 162 (373)
..+......++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|
T Consensus 80 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~ 157 (251)
T PRK06023 80 --TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQR 157 (251)
T ss_pred --hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHH
Confidence 112234456778899999999999999999999999999999999999999999999999999999999999998
Q ss_pred -----ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCc
Q 017331 163 -----FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSR 237 (373)
Q Consensus 163 -----l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 237 (373)
++|+.++|+||+++|||+++||++++.. ++.
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------ 193 (251)
T PRK06023 158 AFALLALGEGFSAEAAQEAGLIWKIVDEEAVEA--ETL------------------------------------------ 193 (251)
T ss_pred HHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHH--HHH------------------------------------------
Confidence 7999999999999999999999887743 222
Q ss_pred CCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHh
Q 017331 238 RTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCR 317 (373)
Q Consensus 238 ~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~ 317 (373)
+++++|++.||.+++.+|++++... ..+.+.+..|...+..++.++ |++||++
T Consensus 194 -----------------------~~a~~l~~~~~~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~---~~~e~~~ 246 (251)
T PRK06023 194 -----------------------KAAEELAAKPPQALQIARDLMRGPR-EDILARIDEEAKHFAARLKSA---EARAAFE 246 (251)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhCCH---HHHHHHH
Confidence 3378999999999999999998764 468888998988888888654 9999999
Q ss_pred hhhccC
Q 017331 318 AILLDK 323 (373)
Q Consensus 318 a~l~eK 323 (373)
+|+ +|
T Consensus 247 af~-e~ 251 (251)
T PRK06023 247 AFM-RR 251 (251)
T ss_pred HHh-cC
Confidence 995 54
No 60
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-49 Score=368.43 Aligned_cols=233 Identities=22% Similarity=0.343 Sum_probs=206.7
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHH
Q 017331 11 VLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKF 90 (373)
Q Consensus 11 v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 90 (373)
+.++++++|++||||||+++|++|.+|+.+|.++++.++.| ++|+|||||.|++||+|+|+++... ...+
T Consensus 2 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~---------~~~~ 71 (243)
T PRK07854 2 IGVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY---------ADDF 71 (243)
T ss_pred ceEEEeCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh---------HHHH
Confidence 67888999999999999999999999999999999999865 8999999999999999999985211 1223
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc--------
Q 017331 91 FSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-------- 162 (373)
Q Consensus 91 ~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g-------- 162 (373)
....+.++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 72 ~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ 151 (243)
T PRK07854 72 PDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAML 151 (243)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHH
Confidence 344567788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCHHH
Q 017331 163 FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEE 242 (373)
Q Consensus 163 l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~e 242 (373)
++|+.++|+||+++|||++|++ +. ++.
T Consensus 152 ltg~~~~a~eA~~~Glv~~v~~---~~---~a~----------------------------------------------- 178 (243)
T PRK07854 152 LGAEKLTAEQALATGMANRIGT---LA---DAQ----------------------------------------------- 178 (243)
T ss_pred HcCCCcCHHHHHHCCCcccccC---HH---HHH-----------------------------------------------
Confidence 8999999999999999999975 21 222
Q ss_pred HHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhhhcc
Q 017331 243 ILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLD 322 (373)
Q Consensus 243 i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~l~e 322 (373)
+++++|++.||.+++.+|++++.. ..+++.++.|...+..++.++ |++||+++| .+
T Consensus 179 ------------------~~a~~l~~~~~~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~---d~~eg~~af-~~ 234 (243)
T PRK07854 179 ------------------AWAAEIAGLAPLALQHAKRVLNDD--GAIEEAWPAHKELFDKAWASQ---DAIEAQVAR-IE 234 (243)
T ss_pred ------------------HHHHHHHhCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhcCc---hHHHHHHHH-hC
Confidence 237899999999999999999875 668999999999998888655 999999999 48
Q ss_pred CCCCCCCCC
Q 017331 323 KDKNPKWKP 331 (373)
Q Consensus 323 K~r~P~w~~ 331 (373)
| |+|.|++
T Consensus 235 k-r~p~~~~ 242 (243)
T PRK07854 235 K-RPPKFQG 242 (243)
T ss_pred C-CCCCCCC
Confidence 8 8899975
No 61
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.4e-50 Score=380.68 Aligned_cols=252 Identities=20% Similarity=0.328 Sum_probs=207.7
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhH-Hhh---hc-cC
Q 017331 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAA-VVR---GI-NE 81 (373)
Q Consensus 7 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~-~~~---~~-~~ 81 (373)
.++.|.++++|+|++|+||||+++|+||.+|+.+|.++++.++.|++||+|||||.|++||+|+|+++ +.. .. ..
T Consensus 3 ~~~~v~~~~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~ 82 (298)
T PRK12478 3 DFQTLLYTTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTD 82 (298)
T ss_pred CceEEEEeccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999986 211 00 00
Q ss_pred CChhhHHHH---HH---HHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccc-cccCCcchH
Q 017331 82 GDWISGAKF---FS---KEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETAL-GLFPDIGAS 154 (373)
Q Consensus 82 ~~~~~~~~~---~~---~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~-G~~p~~g~~ 154 (373)
........+ .. ....++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++ |+++ +++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~~ 160 (298)
T PRK12478 83 GRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TGM 160 (298)
T ss_pred cccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hhH
Confidence 000001111 01 11234567889999999999999999999999999999999999999999997 8875 333
Q ss_pred HHHhhhcc--------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhh
Q 017331 155 YFLSRLPG--------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYH 226 (373)
Q Consensus 155 ~~L~rl~g--------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (373)
+ + +++| ++|++++|+||+++|||+++||++++.....
T Consensus 161 ~-~-~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~--------------------------------- 205 (298)
T PRK12478 161 W-L-YRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVA--------------------------------- 205 (298)
T ss_pred H-H-HHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHH---------------------------------
Confidence 3 2 4577 8999999999999999999999988744222
Q ss_pred HHHHHHHhcCcCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHhh
Q 017331 227 WMDVIDKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRL-QGVGQCLIREYRMVCHVMM 305 (373)
Q Consensus 227 ~~~~i~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~-~~~~e~l~~e~~~~~~~~~ 305 (373)
+++++|+..||.+++.+|++++.... .++.+.+..|...+..++.
T Consensus 206 ----------------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~ 251 (298)
T PRK12478 206 ----------------------------------EVATELARIPLSQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRN 251 (298)
T ss_pred ----------------------------------HHHHHHHhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 23789999999999999999998766 4699999999999999986
Q ss_pred CCCCCcHH--------hhHhhhhccCCCCCCCCCCCc
Q 017331 306 GEVSKDFF--------EGCRAILLDKDKNPKWKPSKL 334 (373)
Q Consensus 306 ~~~s~d~~--------egi~a~l~eK~r~P~w~~~~~ 334 (373)
++ |++ ||++||+ || |+|+|+.-+.
T Consensus 252 s~---d~~e~~~~~~~egv~Af~-ek-R~p~f~~~~~ 283 (298)
T PRK12478 252 TP---DALEFIRTAETQGVRAAV-ER-RDGPFGDYSQ 283 (298)
T ss_pred Ch---hHHHHHHHHHHHHHHHHH-Hh-cCCcccccCc
Confidence 54 997 5999995 99 8999996643
No 62
>PLN02921 naphthoate synthase
Probab=100.00 E-value=3.5e-49 Score=379.55 Aligned_cols=249 Identities=23% Similarity=0.342 Sum_probs=208.8
Q ss_pred CCCcEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChhHHhhhccCCC
Q 017331 7 QEDQVLEEE--TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGD 83 (373)
Q Consensus 7 ~~~~v~~~~--~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~ 83 (373)
+++.|.+++ +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... ..
T Consensus 63 ~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~-~~ 141 (327)
T PLN02921 63 EFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGY-VG 141 (327)
T ss_pred CCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccc-cc
Confidence 467788988 599999999999999999999999999999999999999999999999 89999999998643110 11
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc-
Q 017331 84 WISGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG- 162 (373)
Q Consensus 84 ~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g- 162 (373)
......+ ....++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 142 ~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~ 219 (327)
T PLN02921 142 PDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQ 219 (327)
T ss_pred hhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCH
Confidence 1111111 1234677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhc
Q 017331 163 -------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCF 235 (373)
Q Consensus 163 -------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 235 (373)
++|+.++|+||+++|||+++||++++.. ++.
T Consensus 220 ~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~--~a~---------------------------------------- 257 (327)
T PLN02921 220 KKAREMWFLARFYTASEALKMGLVNTVVPLDELEG--ETV---------------------------------------- 257 (327)
T ss_pred HHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHH--HHH----------------------------------------
Confidence 7999999999999999999999887744 222
Q ss_pred CcCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhh
Q 017331 236 SRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEG 315 (373)
Q Consensus 236 ~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~eg 315 (373)
+++++|++.||.+++.+|++++..... .......+...+..++.+ +|++||
T Consensus 258 -------------------------~~a~~la~~~p~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s---~d~~eg 308 (327)
T PLN02921 258 -------------------------KWCREILRNSPTAIRVLKSALNAADDG-HAGLQELGGNATLLFYGS---EEGNEG 308 (327)
T ss_pred -------------------------HHHHHHHccCHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcC---HHHHHH
Confidence 237899999999999999999876543 333333344666666754 599999
Q ss_pred HhhhhccCCCCCCCCC
Q 017331 316 CRAILLDKDKNPKWKP 331 (373)
Q Consensus 316 i~a~l~eK~r~P~w~~ 331 (373)
+++| ++| |+|+|+.
T Consensus 309 i~Af-~ek-r~p~f~~ 322 (327)
T PLN02921 309 RTAY-LEG-RAPDFSK 322 (327)
T ss_pred HHHH-hcc-CCCCCCC
Confidence 9999 499 8899974
No 63
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=2.1e-49 Score=368.75 Aligned_cols=237 Identities=31% Similarity=0.533 Sum_probs=218.3
Q ss_pred EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHH
Q 017331 12 LEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFF 91 (373)
Q Consensus 12 ~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 91 (373)
.++.+|+|++|+||||+++|++|.+|+.+|.++|+.++.|+++++||++|.|++||+|+|++++... .......+.
T Consensus 1 ~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~----~~~~~~~~~ 76 (245)
T PF00378_consen 1 KYEIEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS----DEEEAREFF 76 (245)
T ss_dssp EEEEETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH----HHHHHHHHH
T ss_pred CEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc----ccccccccc
Confidence 4789999999999999999999999999999999999999999999999999999999999998875 224456777
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc--------c
Q 017331 92 SKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG--------F 163 (373)
Q Consensus 92 ~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g--------l 163 (373)
..++.++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++| +
T Consensus 77 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l 156 (245)
T PF00378_consen 77 RRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLL 156 (245)
T ss_dssp HHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeeccccccccc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred cCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCHHHH
Q 017331 164 FGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEI 243 (373)
Q Consensus 164 ~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei 243 (373)
+|+.++|+||+++|||++++|++++.....
T Consensus 157 ~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~-------------------------------------------------- 186 (245)
T PF00378_consen 157 TGEPISAEEALELGLVDEVVPDEELDEEAL-------------------------------------------------- 186 (245)
T ss_dssp HTCEEEHHHHHHTTSSSEEESGGGHHHHHH--------------------------------------------------
T ss_pred ccccchhHHHHhhcceeEEcCchhhhHHHH--------------------------------------------------
Confidence 999999999999999999999998744322
Q ss_pred HHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhhhccC
Q 017331 244 LSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDK 323 (373)
Q Consensus 244 ~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~l~eK 323 (373)
++++++++.+|.+++.+|+.+++.....+.+.++.|...+..++.++ |++||+++|+ ||
T Consensus 187 -----------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~f~-eK 245 (245)
T PF00378_consen 187 -----------------ELAKRLAAKPPSALRATKKALNRALEQSLEEALEFEQDLFAECFKSE---DFQEGIAAFL-EK 245 (245)
T ss_dssp -----------------HHHHHHHTSCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSH---HHHHHHHHHH-TT
T ss_pred -----------------HHHHHHhcCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCH---HHHHHHHHHh-Cc
Confidence 23789999999999999999999888899999999999999999655 9999999995 87
No 64
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.7e-49 Score=366.89 Aligned_cols=235 Identities=20% Similarity=0.300 Sum_probs=203.9
Q ss_pred EEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHH
Q 017331 14 EETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSK 93 (373)
Q Consensus 14 ~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 93 (373)
+++++|++||||||++ |+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... ......+...
T Consensus 7 ~~~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~---~~~~~~~~~~ 82 (249)
T PRK07938 7 TPEPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPG---FTALIDANRG 82 (249)
T ss_pred ccCCCEEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccc---hhHHHHHHHH
Confidence 4578999999999985 99999999999999999999999999999999999999999998753211 1111222334
Q ss_pred HHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc--------ccC
Q 017331 94 EFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG--------FFG 165 (373)
Q Consensus 94 ~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g--------l~G 165 (373)
...++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++| ++|
T Consensus 83 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg 159 (249)
T PRK07938 83 CFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTA 159 (249)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhC
Confidence 4567788999999999999999999999999999999999999999999999985 56778999999 799
Q ss_pred CCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCHHHHHH
Q 017331 166 ARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEILS 245 (373)
Q Consensus 166 ~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~~ 245 (373)
+.++|+||+++|||+++||++++.. .+.
T Consensus 160 ~~~~a~eA~~~Glv~~vv~~~~l~~--~a~-------------------------------------------------- 187 (249)
T PRK07938 160 ATITAAELHHFGSVEEVVPRDQLDE--AAL-------------------------------------------------- 187 (249)
T ss_pred CcCCHHHHHHCCCccEEeCHHHHHH--HHH--------------------------------------------------
Confidence 9999999999999999999887743 222
Q ss_pred HHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhhhccCCC
Q 017331 246 ALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDKDK 325 (373)
Q Consensus 246 ~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~l~eK~r 325 (373)
+++++|++.||.+++.+|++++.....++.+.++.|...+..++.++ |++||+++|+ +| |
T Consensus 188 ---------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~---d~~eg~~af~-ek-r 247 (249)
T PRK07938 188 ---------------EVARKIAAKDTRVIRAAKEALNGIDPQDVERSYRWEQGFTFELNLAG---VSDEHRDAFV-EK-R 247 (249)
T ss_pred ---------------HHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc---cHHHHHHHHH-hc-C
Confidence 33789999999999999999998877889999999998888888654 9999999995 88 6
Q ss_pred CC
Q 017331 326 NP 327 (373)
Q Consensus 326 ~P 327 (373)
+|
T Consensus 248 ~p 249 (249)
T PRK07938 248 KA 249 (249)
T ss_pred CC
Confidence 66
No 65
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=5.8e-49 Score=367.63 Aligned_cols=245 Identities=18% Similarity=0.251 Sum_probs=209.9
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhh
Q 017331 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWIS 86 (373)
Q Consensus 7 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 86 (373)
+++.+.++++++|++|+||||+++|++|.+|+.+|.++++.++ +++|+|||||.|++||+|+|++++........ .
T Consensus 2 ~~~~i~~~~~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~--~ 77 (255)
T PRK07112 2 DYQTIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGR--A 77 (255)
T ss_pred CCceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccch--h
Confidence 4677999999999999999999999999999999999999988 36999999999999999999998764221111 0
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc----
Q 017331 87 GAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG---- 162 (373)
Q Consensus 87 ~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g---- 162 (373)
........+.++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++| +.+|++++|
T Consensus 78 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a 156 (255)
T PRK07112 78 DLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKA 156 (255)
T ss_pred hhhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHH
Confidence 011123345678889999999999999999999999999999999999999999999999999865 567999999
Q ss_pred ----ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcC
Q 017331 163 ----FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRR 238 (373)
Q Consensus 163 ----l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 238 (373)
++|+.++|+||+++|||+++||+++. ...
T Consensus 157 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~--------------------------------------------- 189 (255)
T PRK07112 157 HYMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLR--------------------------------------------- 189 (255)
T ss_pred HHHHHhCCcccHHHHHHcCCCceecCcHHH--HHH---------------------------------------------
Confidence 89999999999999999999997543 111
Q ss_pred CHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhh
Q 017331 239 TVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRA 318 (373)
Q Consensus 239 ~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a 318 (373)
+++++|++.+|.+++.+|++++.. ...+.+.++.|......++.++ |++||+++
T Consensus 190 ----------------------~~a~~l~~~~p~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~---~~~eg~~a 243 (255)
T PRK07112 190 ----------------------KHLLRLRCLNKAAVARYKSYASTL-DDTVAAARPAALAANIEMFADP---ENLRKIAR 243 (255)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcCh---HHHHHHHH
Confidence 227899999999999999999875 5568999999999888888655 99999999
Q ss_pred hhccCCCCCCCCC
Q 017331 319 ILLDKDKNPKWKP 331 (373)
Q Consensus 319 ~l~eK~r~P~w~~ 331 (373)
|+ +| |+|.|+.
T Consensus 244 f~-~k-r~p~~~~ 254 (255)
T PRK07112 244 YV-ET-GKFPWEA 254 (255)
T ss_pred HH-cC-CCCCCCC
Confidence 95 88 8899973
No 66
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=1.2e-48 Score=373.65 Aligned_cols=252 Identities=22% Similarity=0.336 Sum_probs=209.6
Q ss_pred CCcEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-------CccccccChhHHhhh
Q 017331 8 EDQVLEEE--TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-------RAFCAGGDVAAVVRG 78 (373)
Q Consensus 8 ~~~v~~~~--~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-------~~F~aG~Dl~~~~~~ 78 (373)
+.+|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++...
T Consensus 22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~ 101 (302)
T PRK08321 22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD 101 (302)
T ss_pred ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence 55688888 899999999999999999999999999999999999999999999998 599999999976321
Q ss_pred c----cCC--ChhhHHHH-HHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEe-CCeeEecccccccccCC
Q 017331 79 I----NEG--DWISGAKF-FSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVAT-ENSVFAMPETALGLFPD 150 (373)
Q Consensus 79 ~----~~~--~~~~~~~~-~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~-~~a~f~~pe~~~G~~p~ 150 (373)
. ... ........ ......+...+..+||||||+|||+|+|||++|+++||||||+ ++++|++||+++|++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~ 181 (302)
T PRK08321 102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG 181 (302)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence 0 000 00000011 1112345667889999999999999999999999999999999 69999999999999999
Q ss_pred cchHHHHhhhcc--------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCc
Q 017331 151 IGASYFLSRLPG--------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDH 222 (373)
Q Consensus 151 ~g~~~~L~rl~g--------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (373)
+|++++|+|++| ++|+.++|+||+++|||+++||++++.. ++.
T Consensus 182 ~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~--~a~--------------------------- 232 (302)
T PRK08321 182 GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELET--EAL--------------------------- 232 (302)
T ss_pred chHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHH--HHH---------------------------
Confidence 999999999999 7999999999999999999999887743 222
Q ss_pred chhhHHHHHHHhcCcCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Q 017331 223 SAYHWMDVIDKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCH 302 (373)
Q Consensus 223 ~~~~~~~~i~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~ 302 (373)
+++++|++.||.+++.+|++++.... .+.+....|...+..
T Consensus 233 --------------------------------------~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~ 273 (302)
T PRK08321 233 --------------------------------------EWAREINGKSPTAMRMLKYAFNLTDD-GLVGQQLFAGEATRL 273 (302)
T ss_pred --------------------------------------HHHHHHHhCCHHHHHHHHHHHHhhhc-ccHHHHHHHHHHHHH
Confidence 33789999999999999999987654 344445567788888
Q ss_pred HhhCCCCCcHHhhHhhhhccCCCCCCCCCC
Q 017331 303 VMMGEVSKDFFEGCRAILLDKDKNPKWKPS 332 (373)
Q Consensus 303 ~~~~~~s~d~~egi~a~l~eK~r~P~w~~~ 332 (373)
++.+ +|++||+++|+ +| |+|.|+..
T Consensus 274 ~~~~---~d~~egi~af~-ek-r~p~~~~~ 298 (302)
T PRK08321 274 AYMT---DEAQEGRDAFL-EK-RDPDWSDF 298 (302)
T ss_pred HhcC---HHHHHHHHHHh-cc-CCCCCCCC
Confidence 8865 49999999995 88 88999753
No 67
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=1.6e-48 Score=368.51 Aligned_cols=244 Identities=18% Similarity=0.256 Sum_probs=211.5
Q ss_pred CCCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC--CccccccChhHHhhhccCC
Q 017331 6 SQEDQVLEEE-TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG--RAFCAGGDVAAVVRGINEG 82 (373)
Q Consensus 6 ~~~~~v~~~~-~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g--~~F~aG~Dl~~~~~~~~~~ 82 (373)
.....|.+++ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.....
T Consensus 8 ~~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~-- 84 (278)
T PLN03214 8 GATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKT-- 84 (278)
T ss_pred CCCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhcccc--
Confidence 3456799998 6999999999985 6999999999999999999999999999999998 69999999998753211
Q ss_pred ChhhHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccc-cCCcchHHHHhhhc
Q 017331 83 DWISGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGL-FPDIGASYFLSRLP 161 (373)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~-~p~~g~~~~L~rl~ 161 (373)
.......+......++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|++|++++|++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~ 164 (278)
T PLN03214 85 SAARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVI 164 (278)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhc
Confidence 11111233333455778899999999999999999999999999999999999999999999999 59999999999999
Q ss_pred c--------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHH
Q 017331 162 G--------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDK 233 (373)
Q Consensus 162 g--------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 233 (373)
| ++|+.++|+||+++|||+++||++++.. .++
T Consensus 165 G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~--~a~-------------------------------------- 204 (278)
T PLN03214 165 DRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALME--AAA-------------------------------------- 204 (278)
T ss_pred CHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHH--HHH--------------------------------------
Confidence 9 8999999999999999999999877643 322
Q ss_pred hcCcCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHH
Q 017331 234 CFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFF 313 (373)
Q Consensus 234 ~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~ 313 (373)
+++++|++.||.+++.+|++++......+++.++.|.+.+..++.+ +|++
T Consensus 205 ---------------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s---~d~~ 254 (278)
T PLN03214 205 ---------------------------SAMERALKLPSAARAATKALLREEFSAAWEAYYEEEAKGGWKMLSE---PSII 254 (278)
T ss_pred ---------------------------HHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCC---HHHH
Confidence 2378999999999999999999888888999999999988888865 5999
Q ss_pred hhHhhhhccC
Q 017331 314 EGCRAILLDK 323 (373)
Q Consensus 314 egi~a~l~eK 323 (373)
||+++|+ ||
T Consensus 255 egi~afl-ek 263 (278)
T PLN03214 255 KALGGVM-ER 263 (278)
T ss_pred HHHHHHH-HH
Confidence 9999995 76
No 68
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.3e-48 Score=360.31 Aligned_cols=246 Identities=25% Similarity=0.333 Sum_probs=210.9
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChh
Q 017331 6 SQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWI 85 (373)
Q Consensus 6 ~~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 85 (373)
|+++.|.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... ...
T Consensus 1 ~~~~~v~~~~~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~--~~~ 78 (258)
T PRK06190 1 MTEPILLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGS--AYG 78 (258)
T ss_pred CCCceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccc--hhh
Confidence 356779999999999999999999999999999999999999999999999999999999999999998764211 111
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc---
Q 017331 86 SGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG--- 162 (373)
Q Consensus 86 ~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g--- 162 (373)
. ....+.++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 79 ---~-~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 154 (258)
T PRK06190 79 ---A-QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGR 154 (258)
T ss_pred ---H-HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHH
Confidence 1 223456778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCc
Q 017331 163 -----FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSR 237 (373)
Q Consensus 163 -----l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 237 (373)
++|+.++|+||+++|||++++|++++.+ +++
T Consensus 155 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~--~a~------------------------------------------ 190 (258)
T PRK06190 155 ARRMSLTGDFLDAADALRAGLVTEVVPHDELLP--RAR------------------------------------------ 190 (258)
T ss_pred HHHHHHhCCccCHHHHHHcCCCeEecCHhHHHH--HHH------------------------------------------
Confidence 8999999999999999999999887743 332
Q ss_pred CCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHh
Q 017331 238 RTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCR 317 (373)
Q Consensus 238 ~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~ 317 (373)
+++++|++.||.+++.+|++++.....++.+.++.|...+..++.+-..+.+.+--.
T Consensus 191 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~ 247 (258)
T PRK06190 191 -----------------------RLAASIAGNNPAAVRALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARRE 247 (258)
T ss_pred -----------------------HHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 237899999999999999999998888999999999999999987631123333334
Q ss_pred hhhccCCC
Q 017331 318 AILLDKDK 325 (373)
Q Consensus 318 a~l~eK~r 325 (373)
+| +.++|
T Consensus 248 ~~-~~~~~ 254 (258)
T PRK06190 248 AV-MARGR 254 (258)
T ss_pred HH-HHhhh
Confidence 44 44433
No 69
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=8.8e-48 Score=358.45 Aligned_cols=236 Identities=21% Similarity=0.301 Sum_probs=212.0
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhh
Q 017331 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWIS 86 (373)
Q Consensus 7 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 86 (373)
+++.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... +.
T Consensus 3 ~~~~~~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~-~~--- 78 (249)
T PRK07110 3 MKVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQT-GK--- 78 (249)
T ss_pred CCceEEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccc-hh---
Confidence 57788999999999999999999999999999999999999999999999999999999999999998754321 11
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc----
Q 017331 87 GAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG---- 162 (373)
Q Consensus 87 ~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g---- 162 (373)
..+ .. ..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|
T Consensus 79 -~~~-~~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a 155 (249)
T PRK07110 79 -GTF-TE-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG 155 (249)
T ss_pred -hhH-hh-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence 112 12 46778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcC
Q 017331 163 ----FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRR 238 (373)
Q Consensus 163 ----l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 238 (373)
++|+.++|+||+++|||+++|+++++.+ ++.
T Consensus 156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------- 190 (249)
T PRK07110 156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLE--KAL------------------------------------------- 190 (249)
T ss_pred HHHHHcCCccCHHHHHHcCCCeEEeChHHHHH--HHH-------------------------------------------
Confidence 7999999999999999999999887633 332
Q ss_pred CHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhh
Q 017331 239 TVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRA 318 (373)
Q Consensus 239 ~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a 318 (373)
+.+++|++.||.+++.+|+.++......+.+.++.|...+..++.++ |++||+++
T Consensus 191 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~---~~~egi~~ 245 (249)
T PRK07110 191 ----------------------ELARSLAEKPRHSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQP---EVKRRIES 245 (249)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCH---hHHHHHHH
Confidence 23789999999999999999999888899999999999999999655 99999998
Q ss_pred h
Q 017331 319 I 319 (373)
Q Consensus 319 ~ 319 (373)
.
T Consensus 246 ~ 246 (249)
T PRK07110 246 L 246 (249)
T ss_pred h
Confidence 5
No 70
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=4.1e-47 Score=384.75 Aligned_cols=247 Identities=14% Similarity=0.124 Sum_probs=215.2
Q ss_pred EEEEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHHc-CCCceEEEEecCCCc-cccccChhHH
Q 017331 11 VLEEETSFVRILTLNRPRQL-------------NALSAQMISRLLELFQRYET-DSNVKLLILKGKGRA-FCAGGDVAAV 75 (373)
Q Consensus 11 v~~~~~~~v~~i~lnrp~~~-------------Nal~~~~~~eL~~~l~~~~~-d~~v~~vVltg~g~~-F~aG~Dl~~~ 75 (373)
+.++++++|++||||||+++ |+|+.+|+.+|.+++.+++. |++||+|||||.|+. ||+|+|++..
T Consensus 260 v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~ 339 (546)
T TIGR03222 260 VAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLE 339 (546)
T ss_pred EEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCcccc
Confidence 45566899999999999999 99999999999999999984 599999999999977 9999999842
Q ss_pred hhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEE-cccccchH-hHhhhcCCeEEE-------eCCeeEeccccccc
Q 017331 76 VRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSIL-NGIVMGGG-AGVSIHGRFRVA-------TENSVFAMPETALG 146 (373)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav-nG~a~GgG-~~lala~D~ria-------~~~a~f~~pe~~~G 146 (373)
.. . .. ......+...++++..|..+|||+||+| ||+|+||| ++|+++||+||+ +++++|++||+++|
T Consensus 340 ~~-~--~~-~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lG 415 (546)
T TIGR03222 340 AH-K--DH-WFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFG 415 (546)
T ss_pred cc-c--cc-hhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccc
Confidence 21 1 11 1112233334557788999999999999 89999999 999999999999 89999999999999
Q ss_pred ccCCcchHHHHhhhc-c----------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhcc
Q 017331 147 LFPDIGASYFLSRLP-G----------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSL 215 (373)
Q Consensus 147 ~~p~~g~~~~L~rl~-g----------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~ 215 (373)
++|++|++++|+|++ | ++|+.++|+||+++|||++++|++++.+ ++.
T Consensus 416 l~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~--~a~-------------------- 473 (546)
T TIGR03222 416 LYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWED--EIR-------------------- 473 (546)
T ss_pred cCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHH--HHH--------------------
Confidence 999999999999997 6 7899999999999999999999988744 222
Q ss_pred CCCCCCcchhhHHHHHHHhcCcCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHH-HH
Q 017331 216 EPYLKDHSAYHWMDVIDKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQC-LI 294 (373)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~-l~ 294 (373)
+++++|++.||.+++.+|+.++.....++++. +.
T Consensus 474 ---------------------------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~ 508 (546)
T TIGR03222 474 ---------------------------------------------IALEERASFSPDALTGLEANLRFAGPETMETRIFG 508 (546)
T ss_pred ---------------------------------------------HHHHHHHhcCHHHHHHHHHHHhhcCCcChhhhHHH
Confidence 23789999999999999999999999999999 99
Q ss_pred HHHHHHHHHhhCCCCCcHHh---hHhhhhccCCCCCCCCCCC
Q 017331 295 REYRMVCHVMMGEVSKDFFE---GCRAILLDKDKNPKWKPSK 333 (373)
Q Consensus 295 ~e~~~~~~~~~~~~s~d~~e---gi~a~l~eK~r~P~w~~~~ 333 (373)
.|...+..++.++ |.+| |++||+ || |+|+|+-.+
T Consensus 509 ~e~~~~~~~~~~~---d~~e~~~g~~af~-ek-r~p~f~~~~ 545 (546)
T TIGR03222 509 RLTAWQNWIFNRP---NAVGENGALKVYG-SG-KKAQFDMER 545 (546)
T ss_pred HHHHHHHHHhcCC---cccchhhHHHHHc-cC-CCCCCCccC
Confidence 9999999999765 9999 999995 99 899998554
No 71
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=4.6e-47 Score=385.57 Aligned_cols=251 Identities=14% Similarity=0.110 Sum_probs=215.9
Q ss_pred CCcEE--EEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHHc-CCCceEEEEecCC-Ccccccc
Q 017331 8 EDQVL--EEETSFVRILTLNRPRQL-------------NALSAQMISRLLELFQRYET-DSNVKLLILKGKG-RAFCAGG 70 (373)
Q Consensus 8 ~~~v~--~~~~~~v~~i~lnrp~~~-------------Nal~~~~~~eL~~~l~~~~~-d~~v~~vVltg~g-~~F~aG~ 70 (373)
|.+|. ++++++|++||||||+++ |+||.+|+.+|.++++.++. |++||+|||||.| ++||+|+
T Consensus 259 ~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~ 338 (550)
T PRK08184 259 YRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAA 338 (550)
T ss_pred eEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCC
Confidence 44444 455699999999999998 68999999999999999986 7999999999999 5999999
Q ss_pred ChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEEc-ccccchH-hHhhhcCCeEEEe-------CCeeEecc
Q 017331 71 DVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSILN-GIVMGGG-AGVSIHGRFRVAT-------ENSVFAMP 141 (373)
Q Consensus 71 Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaavn-G~a~GgG-~~lala~D~ria~-------~~a~f~~p 141 (373)
|++.+. ... . ..........+.++.+|..+||||||+|| |+|+||| ++|+++||+|||+ ++++|++|
T Consensus 339 Dl~~~~-~~~--~-~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~p 414 (550)
T PRK08184 339 DATLLA-HKD--H-WLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLS 414 (550)
T ss_pred Chhhhc-ccc--h-HHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECc
Confidence 987322 111 0 01122233445677889999999999997 9999999 9999999999999 99999999
Q ss_pred cccccccCCcchHHHHhhh-cc----------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHH
Q 017331 142 ETALGLFPDIGASYFLSRL-PG----------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVI 210 (373)
Q Consensus 142 e~~~G~~p~~g~~~~L~rl-~g----------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~ 210 (373)
|+++|++|++|++++|+|+ +| ++|+.++|+||+++|||+++||+++++. ++.
T Consensus 415 e~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~--~a~--------------- 477 (550)
T PRK08184 415 ALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWED--EVR--------------- 477 (550)
T ss_pred cccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHH--HHH---------------
Confidence 9999999999999999988 58 4999999999999999999999988744 322
Q ss_pred HHhccCCCCCCcchhhHHHHHHHhcCcCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHH
Q 017331 211 DKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVG 290 (373)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~ 290 (373)
+++++|++.||.+++.+|++++.....+++
T Consensus 478 --------------------------------------------------~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~ 507 (550)
T PRK08184 478 --------------------------------------------------IALEERASLSPDALTGMEANLRFAGPETME 507 (550)
T ss_pred --------------------------------------------------HHHHHHHhCCHHHHHHHHHHHHhcCCCCHH
Confidence 238899999999999999999999999999
Q ss_pred HH-HHHHHHHHHHHhhCCCCCcHHh---hHhhhhccCCCCCCCCCCCc
Q 017331 291 QC-LIREYRMVCHVMMGEVSKDFFE---GCRAILLDKDKNPKWKPSKL 334 (373)
Q Consensus 291 e~-l~~e~~~~~~~~~~~~s~d~~e---gi~a~l~eK~r~P~w~~~~~ 334 (373)
+. +..|...+..++.++ |.+| |++||+ || |+|+|++.++
T Consensus 508 ~~~~~~e~~~~~~~~~~~---d~~e~~~g~~af~-ek-r~~~f~~~~~ 550 (550)
T PRK08184 508 TRIFGRLTAWQNWIFQRP---NAVGEKGALKVYG-TG-QKAQFDWNRV 550 (550)
T ss_pred HHHHHHHHHHHHHHhcCC---cccccchHHHHhc-cC-CCCCCCCCCC
Confidence 99 999999999999765 9999 999995 99 8999997753
No 72
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.3e-45 Score=347.61 Aligned_cols=230 Identities=23% Similarity=0.328 Sum_probs=194.9
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhcc-C---
Q 017331 6 SQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGIN-E--- 81 (373)
Q Consensus 6 ~~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~-~--- 81 (373)
|+++.|.++.+++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 1 ~~~~~v~~~~~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~ 80 (288)
T PRK08290 1 MEYEYVRYEVAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGP 80 (288)
T ss_pred CCCceEEEEeeCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCcccccccccccccc
Confidence 356779999999999999999999999999999999999999999999999999999999999999998642111 0
Q ss_pred -------------CC-hhhHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccc
Q 017331 82 -------------GD-WISGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGL 147 (373)
Q Consensus 82 -------------~~-~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~ 147 (373)
.. ..........+..++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl 160 (288)
T PRK08290 81 DQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI 160 (288)
T ss_pred ccccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc
Confidence 00 0001111233455677889999999999999999999999999999999999999999999998
Q ss_pred cCCcchHHHHhhhcc--------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCC
Q 017331 148 FPDIGASYFLSRLPG--------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYL 219 (373)
Q Consensus 148 ~p~~g~~~~L~rl~g--------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 219 (373)
|+ ++++++++++| ++|+.++|+||+++|||+++||++++.....
T Consensus 161 -~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~-------------------------- 212 (288)
T PRK08290 161 -PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETL-------------------------- 212 (288)
T ss_pred -Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHH--------------------------
Confidence 44 45677899998 8999999999999999999999887744222
Q ss_pred CCcchhhHHHHHHHhcCcCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccC-CHHHHHHHHHH
Q 017331 220 KDHSAYHWMDVIDKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQ-GVGQCLIREYR 298 (373)
Q Consensus 220 ~~~~~~~~~~~i~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~-~~~e~l~~e~~ 298 (373)
+++++|++.||.+++.+|++++..... .+++++..|..
T Consensus 213 -----------------------------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~ 251 (288)
T PRK08290 213 -----------------------------------------ELARRIAAMPPFGLRLTKRAVNQTLDAQGFRAALDAVFD 251 (288)
T ss_pred -----------------------------------------HHHHHHHhCCHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 337899999999999999999987664 69999999999
Q ss_pred HHHHHh
Q 017331 299 MVCHVM 304 (373)
Q Consensus 299 ~~~~~~ 304 (373)
.....+
T Consensus 252 ~~~~~~ 257 (288)
T PRK08290 252 LHQLGH 257 (288)
T ss_pred HHHHcc
Confidence 888776
No 73
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.8e-45 Score=334.81 Aligned_cols=206 Identities=23% Similarity=0.278 Sum_probs=180.1
Q ss_pred CCcEEEEEe-----CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCC
Q 017331 8 EDQVLEEET-----SFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEG 82 (373)
Q Consensus 8 ~~~v~~~~~-----~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~ 82 (373)
+++|.++.. ++|++|+||||++ |++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.....
T Consensus 2 ~~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-- 78 (222)
T PRK05869 2 NEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSA-- 78 (222)
T ss_pred ccchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccCh--
Confidence 455555555 8999999999985 99999999999999999999999999999999999999999998764321
Q ss_pred ChhhHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc
Q 017331 83 DWISGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG 162 (373)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g 162 (373)
...........+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|
T Consensus 79 --~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig 156 (222)
T PRK05869 79 --QEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAG 156 (222)
T ss_pred --hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhC
Confidence 111223344567888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHh
Q 017331 163 --------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKC 234 (373)
Q Consensus 163 --------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 234 (373)
++|++++|+||+++|||++++|++++.. ++.
T Consensus 157 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~--~a~--------------------------------------- 195 (222)
T PRK05869 157 PSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVYD--AAA--------------------------------------- 195 (222)
T ss_pred HHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHH--HHH---------------------------------------
Confidence 8999999999999999999999887743 222
Q ss_pred cCcCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcc
Q 017331 235 FSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGR 285 (373)
Q Consensus 235 f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~ 285 (373)
+.+++|+..+|.+++.+|++++...
T Consensus 196 --------------------------~~a~~ia~~~~~a~~~~K~~~~~~~ 220 (222)
T PRK05869 196 --------------------------AWARRFLDGPPHALAAAKAGISDVY 220 (222)
T ss_pred --------------------------HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3378999999999999999998654
No 74
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.5e-43 Score=334.83 Aligned_cols=239 Identities=18% Similarity=0.222 Sum_probs=195.0
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHc-----CCCceEEEEecC-CCccccccChhHHhhhccCCC
Q 017331 10 QVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYET-----DSNVKLLILKGK-GRAFCAGGDVAAVVRGINEGD 83 (373)
Q Consensus 10 ~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~-----d~~v~~vVltg~-g~~F~aG~Dl~~~~~~~~~~~ 83 (373)
.|.++.+++|++|+|| |+++|+||.+|+.+|.+++++++. |++||+|||||. |++||+|+|++++.......+
T Consensus 18 ~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~ 96 (287)
T PRK08788 18 RVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGD 96 (287)
T ss_pred EEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccc
Confidence 3566677999999996 999999999999999999999998 899999999999 699999999998753211111
Q ss_pred hhhHHHHHHHHHHHHHHHH---hCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhh
Q 017331 84 WISGAKFFSKEFILNYLMA---TYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRL 160 (373)
Q Consensus 84 ~~~~~~~~~~~~~l~~~i~---~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl 160 (373)
......+.......+..+. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+++
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~ 176 (287)
T PRK08788 97 RDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARR 176 (287)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHH
Confidence 1111122222233333333 7999999999999999999999999999999999999999999999999999999999
Q ss_pred cc--------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHH
Q 017331 161 PG--------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVID 232 (373)
Q Consensus 161 ~g--------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 232 (373)
+| ++|+.++|+||+++|||+++||++++.. ++.
T Consensus 177 vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~--~a~------------------------------------- 217 (287)
T PRK08788 177 VGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEA--AVR------------------------------------- 217 (287)
T ss_pred hhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHH--HHH-------------------------------------
Confidence 99 8999999999999999999999887743 222
Q ss_pred HhcCcCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcH
Q 017331 233 KCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDF 312 (373)
Q Consensus 233 ~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~ 312 (373)
+++++|++. |.+...+|+..+.....++.+.++.|...+..+++.. +.-
T Consensus 218 ----------------------------~~a~~ia~~-~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 266 (287)
T PRK08788 218 ----------------------------TFIRKSKRK-LNGWRAMLRARRRVNPLSLEELMDITEIWVDAALQLE--EKD 266 (287)
T ss_pred ----------------------------HHHHHHhcC-ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcc--ccc
Confidence 237788877 8888888887777666789999999888777766643 566
Q ss_pred HhhHhhh
Q 017331 313 FEGCRAI 319 (373)
Q Consensus 313 ~egi~a~ 319 (373)
.+-|.+|
T Consensus 267 ~~~~~~~ 273 (287)
T PRK08788 267 LRTMERL 273 (287)
T ss_pred HHHHHHH
Confidence 7778887
No 75
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=5.9e-44 Score=375.96 Aligned_cols=277 Identities=19% Similarity=0.249 Sum_probs=213.6
Q ss_pred cEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHH
Q 017331 10 QVLEEE-TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGA 88 (373)
Q Consensus 10 ~v~~~~-~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 88 (373)
.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...... ......
T Consensus 7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~-~~~~~~ 85 (715)
T PRK11730 7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAA-PEEELS 85 (715)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccC-CHHHHH
Confidence 577774 799999999999999999999999999999999999999999999999999999999987642111 112223
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc------
Q 017331 89 KFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG------ 162 (373)
Q Consensus 89 ~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g------ 162 (373)
.+....+.++.+|..+|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++|
T Consensus 86 ~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~ 165 (715)
T PRK11730 86 QWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALE 165 (715)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHH
Confidence 45555677888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHH---hccCCCCCCcchhhHHHHHHHhcCc
Q 017331 163 --FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDK---FSLEPYLKDHSAYHWMDVIDKCFSR 237 (373)
Q Consensus 163 --l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~f~~ 237 (373)
++|+.++|+||+++||||++||++++.....+++ +.+... +.....+....... ..+.+++..
T Consensus 166 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a----------~~la~~~~~~~~~~~~~~~p~a~--~~~~~~~~~ 233 (715)
T PRK11730 166 WIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALL----------KQAIAGKLDWKARRQPKLEPLKL--SKIEAMMSF 233 (715)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHH----------HHHhhcCCccccccCcccccccc--cchhHHHHH
Confidence 7999999999999999999999988754333332 111110 00000000000000 001111100
Q ss_pred CCHHHHHHHHHhcccccccHHHHHH-HHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhH
Q 017331 238 RTVEEILSALESESTNRADAWISDA-IQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGC 316 (373)
Q Consensus 238 ~~~~ei~~~L~~~~~~~~~~~a~~~-a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi 316 (373)
..+++. .++..++.|..+ .++++++.+...+++++++.|.+.+..++.++ |++||+
T Consensus 234 -------------------~~~k~~~~~~~~~~~pa~~-~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~---d~~egi 290 (715)
T PRK11730 234 -------------------TTAKGMVAQKAGKHYPAPM-TAVKTIEAAAGLGRDEALELEAKGFVKLAKTN---VARALV 290 (715)
T ss_pred -------------------HHHHHHHHHhhccCCccHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCH---HHHHHH
Confidence 011111 245567788887 56678998888899999999999999999654 999999
Q ss_pred hhhhccC
Q 017331 317 RAILLDK 323 (373)
Q Consensus 317 ~a~l~eK 323 (373)
++|+ ++
T Consensus 291 ~aF~-~~ 296 (715)
T PRK11730 291 GIFL-ND 296 (715)
T ss_pred HHHH-HH
Confidence 9996 55
No 76
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=7e-45 Score=316.31 Aligned_cols=251 Identities=23% Similarity=0.367 Sum_probs=223.6
Q ss_pred cEEEEE----eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChhHHhhhccCCCh
Q 017331 10 QVLEEE----TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGDW 84 (373)
Q Consensus 10 ~v~~~~----~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~ 84 (373)
.|.+++ +.||.+|-+|||.+.|+|+.-|+.+|.++++.+..|+.+|+|+|++.- +.||+|+||++-..+..
T Consensus 28 Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~---- 103 (291)
T KOG1679|consen 28 EVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSP---- 103 (291)
T ss_pred eeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCH----
Confidence 355554 458999999999999999999999999999999999999999999876 99999999999766532
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc--
Q 017331 85 ISGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-- 162 (373)
Q Consensus 85 ~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g-- 162 (373)
..+..|.+.+..++..|.++|.|+||+|+|.|+|||++|+++||+|+|+++++|+++|++++++|++|++++|+|++|
T Consensus 104 ~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~a 183 (291)
T KOG1679|consen 104 SEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVA 183 (291)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHH
Confidence 566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcC
Q 017331 163 ------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFS 236 (373)
Q Consensus 163 ------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 236 (373)
+||+.+++.||...|||+++|...+-.+.+..
T Consensus 184 laKELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~------------------------------------------ 221 (291)
T KOG1679|consen 184 LAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQ------------------------------------------ 221 (291)
T ss_pred HHHhHhhhheeccchhHHhcchHHHHHhcCccccHHHH------------------------------------------
Confidence 89999999999999999999987543211110
Q ss_pred cCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhH
Q 017331 237 RRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGC 316 (373)
Q Consensus 237 ~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi 316 (373)
-|-+++++|.-+.|.++++.|..++.+...++..++..|..-..+.+.+. |..||+
T Consensus 222 ---------------------kal~lA~eilp~gPiavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~---drLegl 277 (291)
T KOG1679|consen 222 ---------------------KALELAREILPQGPIAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIPTK---DRLEGL 277 (291)
T ss_pred ---------------------HHHHHHHHhccCCchhhhHHHHHhccCceecccccccHHHHHHHhcCcHH---HHHHHH
Confidence 11245899999999999999999999999999999999999888888654 999999
Q ss_pred hhhhccCCCCCCCCCC
Q 017331 317 RAILLDKDKNPKWKPS 332 (373)
Q Consensus 317 ~a~l~eK~r~P~w~~~ 332 (373)
.|| .|| |+|.|+++
T Consensus 278 aaf-~ek-r~p~y~G~ 291 (291)
T KOG1679|consen 278 AAF-KEK-RKPEYKGE 291 (291)
T ss_pred HHH-Hhh-cCCCcCCC
Confidence 999 699 89999864
No 77
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-43 Score=337.76 Aligned_cols=212 Identities=24% Similarity=0.365 Sum_probs=179.0
Q ss_pred CCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCC--
Q 017331 5 QSQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEG-- 82 (373)
Q Consensus 5 ~~~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~-- 82 (373)
..+++.|.++.+++|++|+||||+++|++|.+|+.+|.++++.++.|++||+|||||.|++||+|+|++++.......
T Consensus 6 ~~~~~~v~~e~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~ 85 (302)
T PRK08272 6 LDNLKTMTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGG 85 (302)
T ss_pred cCCCCeEEEEeECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccccc
Confidence 345788999999999999999999999999999999999999999999999999999999999999999986432100
Q ss_pred -C----------------hhhH--HHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccc
Q 017331 83 -D----------------WISG--AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPET 143 (373)
Q Consensus 83 -~----------------~~~~--~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~ 143 (373)
. .... ..++...+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~ 165 (302)
T PRK08272 86 GGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPT 165 (302)
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcch
Confidence 0 0000 12234556677888999999999999999999999999999999999999999999
Q ss_pred cccccCCcchHHHHhhhcc--------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhcc
Q 017331 144 ALGLFPDIGASYFLSRLPG--------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSL 215 (373)
Q Consensus 144 ~~G~~p~~g~~~~L~rl~g--------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~ 215 (373)
++|.+|+. ..+++++| ++|+.++|+||+++|||+++||++++.....
T Consensus 166 ~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~---------------------- 220 (302)
T PRK08272 166 RVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTE---------------------- 220 (302)
T ss_pred hcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHH----------------------
Confidence 98666643 24677788 8999999999999999999999887744222
Q ss_pred CCCCCCcchhhHHHHHHHhcCcCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhccc
Q 017331 216 EPYLKDHSAYHWMDVIDKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRL 286 (373)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~ 286 (373)
+++++|++.||.+++.+|++++....
T Consensus 221 ---------------------------------------------~la~~ia~~~~~a~~~~K~~l~~~~~ 246 (302)
T PRK08272 221 ---------------------------------------------RLVERIAAVPVNQLAMVKLAVNSALL 246 (302)
T ss_pred ---------------------------------------------HHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 23789999999999999999988654
No 78
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-43 Score=325.59 Aligned_cols=217 Identities=18% Similarity=0.229 Sum_probs=188.9
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHH
Q 017331 9 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGA 88 (373)
Q Consensus 9 ~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 88 (373)
+.|.++++++|++|+||||+ .|++|.+|+.+|.++++.++ +++++|||||.|++||+|+|++++... .....
T Consensus 3 ~~i~~~~~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~-----~~~~~ 74 (229)
T PRK06213 3 ELVSYTLEDGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG-----AQAAI 74 (229)
T ss_pred ceEEEEecCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc-----hHhHH
Confidence 46889999999999999984 69999999999999999987 457999999999999999999987642 12223
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCC-eeEecccccccccCCcchHHHHhhhcc-----
Q 017331 89 KFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATEN-SVFAMPETALGLFPDIGASYFLSRLPG----- 162 (373)
Q Consensus 89 ~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~-a~f~~pe~~~G~~p~~g~~~~L~rl~g----- 162 (373)
.+....++++.++.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|+.|+.+++++.+|
T Consensus 75 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~ 154 (229)
T PRK06213 75 ALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQ 154 (229)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHH
Confidence 45556677888999999999999999999999999999999999999 999999999999988888888888887
Q ss_pred ---ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCC
Q 017331 163 ---FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRT 239 (373)
Q Consensus 163 ---l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 239 (373)
++|++++|+||+++||||+++|++++.. .+.
T Consensus 155 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~-------------------------------------------- 188 (229)
T PRK06213 155 RAVINAEMFDPEEAVAAGFLDEVVPPEQLLA--RAQ-------------------------------------------- 188 (229)
T ss_pred HHHHcCcccCHHHHHHCCCceeccChHHHHH--HHH--------------------------------------------
Confidence 7999999999999999999999887743 222
Q ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 017331 240 VEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMV 300 (373)
Q Consensus 240 ~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~ 300 (373)
+++++|++.+|.+++.+|++++......+.+.++.|.+.+
T Consensus 189 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~ 228 (229)
T PRK06213 189 ---------------------AAARELAGLNMGAHAATKLKVRAAALEAIRAAIEGDAAEF 228 (229)
T ss_pred ---------------------HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhchhhhhhhc
Confidence 3378999999999999999999877777888888777643
No 79
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=2.5e-42 Score=363.54 Aligned_cols=272 Identities=19% Similarity=0.282 Sum_probs=209.7
Q ss_pred CcEEEEE-eCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChhHHhhhccCCChh
Q 017331 9 DQVLEEE-TSFVRILTLNRP-RQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGDWI 85 (373)
Q Consensus 9 ~~v~~~~-~~~v~~i~lnrp-~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 85 (373)
..+.+++ +++|++|+|||| +++|+||.+|+.+|.++++.++.|+++|+|||+|.+ ++||+|+|++++..... ..
T Consensus 5 ~~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~---~~ 81 (708)
T PRK11154 5 SAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKT---AQ 81 (708)
T ss_pred ceEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCC---HH
Confidence 3477787 789999999999 689999999999999999999999999999999876 89999999998754211 11
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCC--eeEecccccccccCCcchHHHHhhhcc-
Q 017331 86 SGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATEN--SVFAMPETALGLFPDIGASYFLSRLPG- 162 (373)
Q Consensus 86 ~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~--a~f~~pe~~~G~~p~~g~~~~L~rl~g- 162 (373)
....+....+.++.+|.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|+|++|
T Consensus 82 ~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~ 161 (708)
T PRK11154 82 EAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGV 161 (708)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCH
Confidence 12233445566788999999999999999999999999999999999986 489999999999999999999999999
Q ss_pred -------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhc
Q 017331 163 -------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCF 235 (373)
Q Consensus 163 -------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 235 (373)
++|+.++|+||+++||||++|+++++.....++++.. ...+...+ ... +..
T Consensus 162 ~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~-------------~~~~~~~~---~~~------~~~ 219 (708)
T PRK11154 162 STALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKG-------------KPARRPLP---VRE------RLL 219 (708)
T ss_pred HHHHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhc-------------CCccCcCC---chh------hhc
Confidence 8999999999999999999999988754333332110 00000000 000 000
Q ss_pred CcC--CHHHHHHHHHhcccccccHHHHHHHHHHHhcCc---chHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCC
Q 017331 236 SRR--TVEEILSALESESTNRADAWISDAIQSLKKASP---TSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSK 310 (373)
Q Consensus 236 ~~~--~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp---~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~ 310 (373)
+.. ....++ ......+.+.++ .|+..+|++++.+...++.+++..|.+.+..++.++
T Consensus 220 ~~~p~~~~~~~---------------~~~~~~~~~~~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~--- 281 (708)
T PRK11154 220 EGNPLGRALLF---------------KQARKKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTP--- 281 (708)
T ss_pred ccCchhHHHHH---------------HHHHHHHHHhcccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCH---
Confidence 000 001111 111222223322 589999999999988899999999999999999654
Q ss_pred cHHhhHhhhhccC
Q 017331 311 DFFEGCRAILLDK 323 (373)
Q Consensus 311 d~~egi~a~l~eK 323 (373)
|+++|+++|+.++
T Consensus 282 ~~~~~~~aF~~~~ 294 (708)
T PRK11154 282 ESAALRSIFFATT 294 (708)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998665
No 80
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=5.9e-42 Score=327.22 Aligned_cols=279 Identities=19% Similarity=0.257 Sum_probs=202.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChhHHhhhccCCChhhHHHHHHHHHHH
Q 017331 19 VRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGDWISGAKFFSKEFIL 97 (373)
Q Consensus 19 v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l 97 (373)
+++|+||||+++|++|.+|+.+|.++++.++.|++|++|||||.| ++||+|+|++++...... .......+...++++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~-~~~~~~~~~~~~~~l 116 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAG-NPQEYRQYMRLFNDM 116 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhccc-ChhHHHHHHHHHHHH
Confidence 466999999999999999999999999999999999999999999 799999999987643211 112223444555678
Q ss_pred HHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc--------ccCCCcc
Q 017331 98 NYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG--------FFGARLD 169 (373)
Q Consensus 98 ~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g--------l~G~~i~ 169 (373)
+..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++| ++|+.++
T Consensus 117 ~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s 196 (360)
T TIGR03200 117 VSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS 196 (360)
T ss_pred HHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence 88899999999999999999999999999999999999999999999999999999999999999 7999999
Q ss_pred HHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCc---chhhHHHHHHHhcCcCCHHHHHHH
Q 017331 170 GAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDH---SAYHWMDVIDKCFSRRTVEEILSA 246 (373)
Q Consensus 170 a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~f~~~~~~ei~~~ 246 (373)
|+||+++|||+++||+.+++. +-+++-...+ .+.++.|....+...+ .+......++++= .....
T Consensus 197 A~EA~~~GLVd~VVp~~~~~~--~~~~~~~~~~----d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~--~~~~~---- 264 (360)
T TIGR03200 197 AHKAKRLGIIMDVVPALKVDG--KFVANPLVVT----DRYLDEFGRIVHGEFKAGDELKAGKELIKQGT--IDLSL---- 264 (360)
T ss_pred HHHHHHcCChheecCchhcCc--chhcCcccch----HHHHHHHhHHhcCCCcchhHHHHHHHHHhccc--chHhH----
Confidence 999999999999999877621 0000000000 0001111111110000 0000111111000 00000
Q ss_pred HHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhhhccC
Q 017331 247 LESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDK 323 (373)
Q Consensus 247 L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~l~eK 323 (373)
| ++=.++++.++....|.++.-++..+|......+...-..-...+..-+. .+..+|++|| .++
T Consensus 265 l--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~ 328 (360)
T TIGR03200 265 L--------DEAVEALCAKLLNTFPECLTKSIEELRKPKLFAWNQNKENSRAWLALNMM----NEARTGFRAF-NEG 328 (360)
T ss_pred H--------HHHHHHHHHHHHHhchHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHhhcc----cccchhhHHH-hcc
Confidence 1 11122357788999999999999999988777777766666666655554 2999999999 575
No 81
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=2.1e-43 Score=309.76 Aligned_cols=253 Identities=23% Similarity=0.361 Sum_probs=216.6
Q ss_pred CCcEEEE---EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhc---cC
Q 017331 8 EDQVLEE---ETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGI---NE 81 (373)
Q Consensus 8 ~~~v~~~---~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~---~~ 81 (373)
++.+.+. .+..|..+.||||.|+|+||..|+.|+.++++.++.||++|+|||+|+|++||+|.|+..+.... .+
T Consensus 18 ~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~ 97 (292)
T KOG1681|consen 18 YKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPE 97 (292)
T ss_pred cceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccc
Confidence 4444444 34689999999999999999999999999999999999999999999999999999987765431 11
Q ss_pred CC-----hhhHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHH
Q 017331 82 GD-----WISGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYF 156 (373)
Q Consensus 82 ~~-----~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~ 156 (373)
++ ...++.++..+++.+..|.+||||+|++|+|+|+|||..|..+||+|+|+++|.|..-|+.+|+..+.|...+
T Consensus 98 ~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~R 177 (292)
T KOG1681|consen 98 GDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNR 177 (292)
T ss_pred cchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhh
Confidence 11 1245566777888999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhcc---------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhH
Q 017331 157 LSRLPG---------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHW 227 (373)
Q Consensus 157 L~rl~g---------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (373)
||+.+| +|++.++|.||++.|||.+|+|+.+-. +..++
T Consensus 178 lpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~l-l~~~l-------------------------------- 224 (292)
T KOG1681|consen 178 LPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEEL-LNGAL-------------------------------- 224 (292)
T ss_pred hhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHH-HhhhH--------------------------------
Confidence 999999 899999999999999999999974321 22333
Q ss_pred HHHHHHhcCcCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCC
Q 017331 228 MDVIDKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGE 307 (373)
Q Consensus 228 ~~~i~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~ 307 (373)
.+|+.|+.+||.++..||+.+..+.+.+.++.|.+-..+....+.+
T Consensus 225 ---------------------------------~mA~~Ia~KSpvaVqgTK~~L~ysrehsv~~sLnyvatwNms~L~s- 270 (292)
T KOG1681|consen 225 ---------------------------------PMAELIASKSPVAVQGTKENLLYSREHSVEESLNYVATWNMSMLLS- 270 (292)
T ss_pred ---------------------------------HHHHHhccCCceeeechHHHHHHHhhhhhhhhHHHHHHHHHHHHHH-
Confidence 3488999999999999999999999999999999988888777754
Q ss_pred CCCcHHhhHhhhhccCCCCCCCC
Q 017331 308 VSKDFFEGCRAILLDKDKNPKWK 330 (373)
Q Consensus 308 ~s~d~~egi~a~l~eK~r~P~w~ 330 (373)
+|+.+.+.|-+ +|.+++-|.
T Consensus 271 --~Dl~~av~a~m-~k~k~~tfs 290 (292)
T KOG1681|consen 271 --DDLVKAVMAQM-EKLKTVTFS 290 (292)
T ss_pred --HHHHHHHHHHh-hcCCCCCcc
Confidence 59999999995 773333364
No 82
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=9.9e-42 Score=358.33 Aligned_cols=271 Identities=21% Similarity=0.320 Sum_probs=205.9
Q ss_pred EEEeCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHHcCCCceEEEE-ecCCCccccccChhHHhhhccCCChhhHHHH
Q 017331 13 EEETSFVRILTLNRP-RQLNALSAQMISRLLELFQRYETDSNVKLLIL-KGKGRAFCAGGDVAAVVRGINEGDWISGAKF 90 (373)
Q Consensus 13 ~~~~~~v~~i~lnrp-~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl-tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 90 (373)
.+.+++|++|||||| +++|+||.+|+.+|.++|+.++.|+++|+||| +|.|++||+|+|++++..... ......+
T Consensus 5 ~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~---~~~~~~~ 81 (699)
T TIGR02440 5 TVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQT---AGEAKAL 81 (699)
T ss_pred EEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCC---hhHHHHH
Confidence 345689999999999 68999999999999999999999999999987 678899999999998754211 1122334
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCC--eeEecccccccccCCcchHHHHhhhcc------
Q 017331 91 FSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATEN--SVFAMPETALGLFPDIGASYFLSRLPG------ 162 (373)
Q Consensus 91 ~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~--a~f~~pe~~~G~~p~~g~~~~L~rl~g------ 162 (373)
....+.++..|.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|+|++|
T Consensus 82 ~~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~ 161 (699)
T TIGR02440 82 AQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALD 161 (699)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHH
Confidence 455567888999999999999999999999999999999999986 799999999999999999999999999
Q ss_pred --ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCc--C
Q 017331 163 --FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSR--R 238 (373)
Q Consensus 163 --l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~--~ 238 (373)
++|+.++|++|+++||||++||++++.....+++... .......+... +..+. .
T Consensus 162 llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~----------------~~~~~~~~~~~------~~~~~~~~ 219 (699)
T TIGR02440 162 MILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKG----------------KPIRKPLSLQE------RLLEGTPL 219 (699)
T ss_pred HHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhC----------------CCCCCCccchh------hhcccCch
Confidence 7999999999999999999999988855444442110 00000000000 00000 0
Q ss_pred CHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhh
Q 017331 239 TVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRA 318 (373)
Q Consensus 239 ~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a 318 (373)
....+++... +++.++ ....-.|...+|+.++.+...+++++++.|.+.+..++.++ |+++++++
T Consensus 220 a~~~~~~~~~-----------k~~~~~-~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~---~~~~~~~~ 284 (699)
T TIGR02440 220 GRALLFDQAA-----------KKTAKK-TQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTP---ESAALRSI 284 (699)
T ss_pred hHHHHHHHHH-----------HHHHHh-cccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH---HHHHHHHH
Confidence 0001111000 011112 22233467778899999988999999999999999999665 99999999
Q ss_pred hhccC
Q 017331 319 ILLDK 323 (373)
Q Consensus 319 ~l~eK 323 (373)
|+.++
T Consensus 285 f~~~~ 289 (699)
T TIGR02440 285 FFATT 289 (699)
T ss_pred HHHHH
Confidence 98765
No 83
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=7.1e-41 Score=351.99 Aligned_cols=279 Identities=19% Similarity=0.239 Sum_probs=212.6
Q ss_pred cEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHH
Q 017331 10 QVLEEE-TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGA 88 (373)
Q Consensus 10 ~v~~~~-~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 88 (373)
.+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++....... .....
T Consensus 7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~~ 85 (714)
T TIGR02437 7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALP-DAELI 85 (714)
T ss_pred eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCC-HHHHH
Confidence 577775 7899999999999999999999999999999999999999999999999999999999986421111 11223
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc------
Q 017331 89 KFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG------ 162 (373)
Q Consensus 89 ~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g------ 162 (373)
.+....+.++..|..+|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|
T Consensus 86 ~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~ 165 (714)
T TIGR02437 86 QWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALE 165 (714)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 34455667888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHH---hccCCCCCCcchhhHHHHHHHhcCc
Q 017331 163 --FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDK---FSLEPYLKDHSAYHWMDVIDKCFSR 237 (373)
Q Consensus 163 --l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~f~~ 237 (373)
++|+.++|++|+++||||+++|++++...+.++.. ..+.. +.....+...... ...+.++|..
T Consensus 166 llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~----------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 233 (714)
T TIGR02437 166 WIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLK----------DAINGKLDWKAKRQPKLEPLK--LSKIEAMMSF 233 (714)
T ss_pred HHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHH----------HHhhcCCcccccCCCCccccc--ccchHHHHHH
Confidence 89999999999999999999998888554444321 11110 0000000000000 0001111111
Q ss_pred CCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHh
Q 017331 238 RTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCR 317 (373)
Q Consensus 238 ~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~ 317 (373)
.. +.+...++-.++.|...+.. +.++.+...+++++++.|.+.|.+++.++ +.+..++
T Consensus 234 ~~------------------~~~~~~~~~~~~~pap~~~~-~~v~~~~~~~~~~gl~~E~~~f~~l~~s~---~a~~l~~ 291 (714)
T TIGR02437 234 TT------------------AKGMVAQVAGPHYPAPMTAV-KTIEKAARFGRDKALEIEAKGFVKLAKTS---EAKALIG 291 (714)
T ss_pred HH------------------HHHHHHHhhcCCCCCHHHHH-HHHHHHhcCCHHHHHHHHHHHHHHHhCCH---HHHHHHH
Confidence 11 11112334445555555555 67788878889999999999999999765 9999999
Q ss_pred hhhccC
Q 017331 318 AILLDK 323 (373)
Q Consensus 318 a~l~eK 323 (373)
+||.++
T Consensus 292 ~ff~~r 297 (714)
T TIGR02437 292 LFLNDQ 297 (714)
T ss_pred HHhhhH
Confidence 998765
No 84
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=9.7e-42 Score=297.19 Aligned_cols=247 Identities=26% Similarity=0.437 Sum_probs=201.0
Q ss_pred CCCcEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecC--C-CccccccChhHHhhhccCC
Q 017331 7 QEDQVLEEET-SFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGK--G-RAFCAGGDVAAVVRGINEG 82 (373)
Q Consensus 7 ~~~~v~~~~~-~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~--g-~~F~aG~Dl~~~~~~~~~~ 82 (373)
.++.|.+++. ++++.|+||||+++|++.+..+.||.+++..+..|++|.+|||||. | .+||+|+|-+-......-.
T Consensus 16 ~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~ 95 (282)
T COG0447 16 GYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYV 95 (282)
T ss_pred CcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCcc
Confidence 4788999998 9999999999999999999999999999999999999999999985 6 8999999987543311100
Q ss_pred ChhhHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc
Q 017331 83 DWISGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG 162 (373)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g 162 (373)
+.+... .-...++.+.|+.+||||||.|+|+|+|||-.|-+.||+.||+++|+|++.-.++|-+-++-++.+|+|++|
T Consensus 96 ~d~~~~--rLnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VG 173 (282)
T COG0447 96 DDDGIP--RLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVG 173 (282)
T ss_pred CCccCc--ccchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhh
Confidence 000001 113346677889999999999999999999999999999999999999999999999988888889999999
Q ss_pred --------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHh
Q 017331 163 --------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKC 234 (373)
Q Consensus 163 --------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 234 (373)
+.++.++|+||+++|+||.|||.++|+. +.+
T Consensus 174 qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~--e~v--------------------------------------- 212 (282)
T COG0447 174 QKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEK--ETV--------------------------------------- 212 (282)
T ss_pred hhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHH--HHH---------------------------------------
Confidence 7899999999999999999999998844 333
Q ss_pred cCcCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHH--HHHHHHHHHHHHHhhCCCCCcH
Q 017331 235 FSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVG--QCLIREYRMVCHVMMGEVSKDF 312 (373)
Q Consensus 235 f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~--e~l~~e~~~~~~~~~~~~s~d~ 312 (373)
+| ++.|.++||.+++..|-.++.-.+ .+. +.+.-+...+ .+. +++.
T Consensus 213 ----------------------~W----~~E~l~kSP~AlR~LK~Afnad~D-GlaG~q~~ag~at~L--~Ym---TdEa 260 (282)
T COG0447 213 ----------------------QW----AREMLAKSPTALRMLKAAFNADCD-GLAGLQELAGNATLL--YYM---TDEA 260 (282)
T ss_pred ----------------------HH----HHHHHhcChHHHHHHHHHhcCCCc-hhhHHHHhcccceEE--EEe---chhh
Confidence 45 688999999999999999986443 111 1111111111 122 4699
Q ss_pred HhhHhhhhccCCCCCCCC
Q 017331 313 FEGCRAILLDKDKNPKWK 330 (373)
Q Consensus 313 ~egi~a~l~eK~r~P~w~ 330 (373)
+||-.||+ || |+|.|+
T Consensus 261 ~EGr~AF~-eK-R~Pdf~ 276 (282)
T COG0447 261 QEGRDAFL-EK-RKPDFS 276 (282)
T ss_pred hhhHHHHh-hc-cCCChH
Confidence 99999995 99 899987
No 85
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=5.1e-40 Score=304.18 Aligned_cols=175 Identities=18% Similarity=0.172 Sum_probs=149.1
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCce-EEEEecCCCccccccChhHHhhhccCCChhhHHH
Q 017331 11 VLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVK-LLILKGKGRAFCAGGDVAAVVRGINEGDWISGAK 89 (373)
Q Consensus 11 v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~-~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 89 (373)
+.++++++|++|+||||++ |+||.+|+.+|.++++.++.|++++ +||++|.|++||+|+|++++.... ........
T Consensus 2 ~~~~~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~--~~~~~~~~ 78 (239)
T PLN02267 2 CTLEKRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAG--SAPSRLHL 78 (239)
T ss_pred ceeEecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccc--cCHHHHHH
Confidence 6788899999999999986 9999999999999999999998875 777799999999999999865321 11111223
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEe-CCeeEecccccccccCCcchHHHHhhhcc------
Q 017331 90 FFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVAT-ENSVFAMPETALGLFPDIGASYFLSRLPG------ 162 (373)
Q Consensus 90 ~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~-~~a~f~~pe~~~G~~p~~g~~~~L~rl~g------ 162 (373)
+...+++++..|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|+.++++++++|++++|
T Consensus 79 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~ 158 (239)
T PLN02267 79 MVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARR 158 (239)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHH
Confidence 34456678888999999999999999999999999999999998 56899999999999744445778999888
Q ss_pred ---ccCCCccHHHHHHcCccceecCc-CcH
Q 017331 163 ---FFGARLDGAEMRACGLATHFVPS-SRL 188 (373)
Q Consensus 163 ---l~G~~i~a~eA~~~GLv~~vv~~-~~l 188 (373)
++|+.++|+||+++|||++++|+ +++
T Consensus 159 ~llltG~~~~a~eA~~~Glv~~vv~~~~~l 188 (239)
T PLN02267 159 DVLLRAAKLTAEEAVEMGIVDSAHDSAEET 188 (239)
T ss_pred HHHHcCCcCCHHHHHHCCCcceecCCHHHH
Confidence 68999999999999999999985 455
No 86
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=1.1e-39 Score=343.77 Aligned_cols=284 Identities=18% Similarity=0.292 Sum_probs=208.5
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEE-EEecCCCccccccChhHHhhhccCCC
Q 017331 6 SQEDQVLEEETSFVRILTLNRPR-QLNALSAQMISRLLELFQRYETDSNVKLL-ILKGKGRAFCAGGDVAAVVRGINEGD 83 (373)
Q Consensus 6 ~~~~~v~~~~~~~v~~i~lnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~v-Vltg~g~~F~aG~Dl~~~~~~~~~~~ 83 (373)
+.++.+.++++++|++|+||||+ +.|+||.+|+.+|.++++.++.|+++|+| |+||.|++||+|+|++++.... .
T Consensus 10 ~~~~~~~~~~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~---~ 86 (737)
T TIGR02441 10 MARTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACK---T 86 (737)
T ss_pred CCCCeEEEEEECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccC---C
Confidence 45677999999999999999998 58999999999999999999999999965 5699999999999999986421 1
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCC--eeEecccccccccCCcchHHHHhhhc
Q 017331 84 WISGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATEN--SVFAMPETALGLFPDIGASYFLSRLP 161 (373)
Q Consensus 84 ~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~--a~f~~pe~~~G~~p~~g~~~~L~rl~ 161 (373)
......+....+.++.+|.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|+|++
T Consensus 87 ~~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprli 166 (737)
T TIGR02441 87 AQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLT 166 (737)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhh
Confidence 1223344556677889999999999999999999999999999999999987 58999999999999999999999999
Q ss_pred c--------ccCCCccHHHHHHcCccceecCc--C-----------cHHHHHHHHHhccCCCHHHHHHHHHHhcc-CCCC
Q 017331 162 G--------FFGARLDGAEMRACGLATHFVPS--S-----------RLALLEEALYKVNSSDPAVISAVIDKFSL-EPYL 219 (373)
Q Consensus 162 g--------l~G~~i~a~eA~~~GLv~~vv~~--~-----------~l~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~ 219 (373)
| ++|++++|++|+++||||++||+ + ++...+.++. ..... +...
T Consensus 167 G~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a--------------~~l~~~~~~~ 232 (737)
T TIGR02441 167 GVPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFA--------------QGLANGKLSI 232 (737)
T ss_pred CHHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHH--------------HHhhcccCCc
Confidence 9 89999999999999999999986 2 1222111111 00000 0000
Q ss_pred CC-cchhhHHHHHHHhcCc-CCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHH
Q 017331 220 KD-HSAYHWMDVIDKCFSR-RTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREY 297 (373)
Q Consensus 220 ~~-~~~~~~~~~i~~~f~~-~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~ 297 (373)
.. ........ ....+. .....+++..+ +++.++...+.|...++. +.+..+...+++++++.|.
T Consensus 233 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-----------~~~~~~~~g~~~Ap~~~l-~~v~~~~~~~~~~gl~~E~ 298 (737)
T TIGR02441 233 NRDKGLVHKIT--QYVMTNPFVRQQVYKTAE-----------DKVMKQTKGLYPAPLKIL-DVVRTGYDQGPDAGYEAES 298 (737)
T ss_pred cccccccCccc--hhhcccchhHHHHHHHHH-----------HHHHHhccCCCccHHHHH-HHHHHHhcCCHHHHHHHHH
Confidence 00 00000000 000000 00111221111 122333333355555555 6788887889999999999
Q ss_pred HHHHHHhhCCCCCcHHhhHhhhhccC
Q 017331 298 RMVCHVMMGEVSKDFFEGCRAILLDK 323 (373)
Q Consensus 298 ~~~~~~~~~~~s~d~~egi~a~l~eK 323 (373)
+.|..++.++ ..+.-++.||.++
T Consensus 299 ~~f~~l~~s~---~a~al~~~f~~~~ 321 (737)
T TIGR02441 299 KAFGELSMTF---ESKALIGLFHGQT 321 (737)
T ss_pred HHHHHHhCCH---HHHHHHHHHHHHH
Confidence 9999999765 9999999998775
No 87
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=9.1e-39 Score=286.92 Aligned_cols=247 Identities=21% Similarity=0.330 Sum_probs=217.7
Q ss_pred CCCCCcEEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCC
Q 017331 5 QSQEDQVLEEETSFVRILTLN-RPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGD 83 (373)
Q Consensus 5 ~~~~~~v~~~~~~~v~~i~ln-rp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~ 83 (373)
.+.+..+.++++|++.+|.+| ||++.|+++.+++.++.++|+.+.+|+++..++++|.|++||+|.|+..+....+.+.
T Consensus 3 ~~~~~~~vv~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~ 82 (266)
T KOG0016|consen 3 AMRYREIVVTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDA 82 (266)
T ss_pred cccccceEEEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcc
Confidence 356788999999999999999 9999999999999999999999999999999999999999999999998876543222
Q ss_pred hh---hHHHHHHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhh
Q 017331 84 WI---SGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRL 160 (373)
Q Consensus 84 ~~---~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl 160 (373)
.. ....+...+......+..+|||+||.|||+|+|-|..+.-.||+++|+++++|..|++++|+.|.+|++|.||++
T Consensus 83 ~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~i 162 (266)
T KOG0016|consen 83 NEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKI 162 (266)
T ss_pred cccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHh
Confidence 21 122223333446778889999999999999999999999999999999999999999999999999999999999
Q ss_pred cc--------ccCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHH
Q 017331 161 PG--------FFGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVID 232 (373)
Q Consensus 161 ~g--------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 232 (373)
+| +.|++++|+||.+.|||+++++.+.+.. +++
T Consensus 163 mG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~--~v~------------------------------------- 203 (266)
T KOG0016|consen 163 MGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNE--EVL------------------------------------- 203 (266)
T ss_pred hchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHH--HHH-------------------------------------
Confidence 99 7899999999999999999999987743 322
Q ss_pred HhcCcCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcH
Q 017331 233 KCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDF 312 (373)
Q Consensus 233 ~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~ 312 (373)
+.++++++.||.+++..|+++|......+..+.+.|.......|.++ |+
T Consensus 204 ----------------------------~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~---e~ 252 (266)
T KOG0016|consen 204 ----------------------------KKIKQYSKLSPESLLGMKKLLRSNIKEELIKANEEECNVLLKQWVSA---EC 252 (266)
T ss_pred ----------------------------HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCh---HH
Confidence 22688899999999999999999888999999999999999999655 99
Q ss_pred HhhHhhhhc
Q 017331 313 FEGCRAILL 321 (373)
Q Consensus 313 ~egi~a~l~ 321 (373)
...+.+|+.
T Consensus 253 ~~~~~~~~~ 261 (266)
T KOG0016|consen 253 LARFKQYLS 261 (266)
T ss_pred HHHHHHHhc
Confidence 999999963
No 88
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=3.2e-39 Score=278.88 Aligned_cols=246 Identities=23% Similarity=0.351 Sum_probs=213.6
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHH
Q 017331 11 VLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKF 90 (373)
Q Consensus 11 v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 90 (373)
.+++.+++|..|+||+|+|+|.|+.+|+.+|.+.|....++.++|+|||+..|+.||+|.||+++..... .+.-.+.
T Consensus 34 g~~~~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g---~d~haev 110 (287)
T KOG1682|consen 34 GLVKEHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPG---SDIHAEV 110 (287)
T ss_pred cccccccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCcc---chHHHHH
Confidence 5566779999999999999999999999999999998888889999999999999999999999976432 2444677
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEeccccccccc---CCcchHHHHhhhcc----c
Q 017331 91 FSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLF---PDIGASYFLSRLPG----F 163 (373)
Q Consensus 91 ~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~---p~~g~~~~L~rl~g----l 163 (373)
++...+++..|+++|+|+||-|||+|..+||.|...||++||+++++|..|-.++|++ |+.......+|.+. +
T Consensus 111 Fqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGvAlaRavpRkva~~ML~ 190 (287)
T KOG1682|consen 111 FQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGVALARAVPRKVAAYMLM 190 (287)
T ss_pred HHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcchhHhhhcchhHHHHHHH
Confidence 8888899999999999999999999999999999999999999999999999999997 44333333344333 8
Q ss_pred cCCCccHHHHHHcCccceecCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccCCCCCCcchhhHHHHHHHhcCcCCHHHH
Q 017331 164 FGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEI 243 (373)
Q Consensus 164 ~G~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei 243 (373)
||.+|+++||+..|||+++||.++++...+
T Consensus 191 Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~-------------------------------------------------- 220 (287)
T KOG1682|consen 191 TGLPITGEEALISGLVSKVVPAEELDKEIE-------------------------------------------------- 220 (287)
T ss_pred hCCCCchHHHHHhhhhhhcCCHHHHHHHHH--------------------------------------------------
Confidence 999999999999999999999998854222
Q ss_pred HHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhhhccC
Q 017331 244 LSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDK 323 (373)
Q Consensus 244 ~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~l~eK 323 (373)
++...|...|...+.+.|+.+......+-.+++....+.+..-+.-+ |.+|||.+|+ +|
T Consensus 221 -----------------~i~~~i~~~srav~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql~---d~kegiasf~-~k 279 (287)
T KOG1682|consen 221 -----------------EITNAIKAKSRAVISLGKEFYYKQLAMSQAEAFSAAQEKMCENFQLG---DTKEGIASFF-EK 279 (287)
T ss_pred -----------------HHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccc---chHHHHHHHh-cc
Confidence 22577888888889999999988888888999999999999888776 9999999995 99
Q ss_pred CCCCCCCC
Q 017331 324 DKNPKWKP 331 (373)
Q Consensus 324 ~r~P~w~~ 331 (373)
|+|+|+|
T Consensus 280 -rp~~~~h 286 (287)
T KOG1682|consen 280 -RPPNWKH 286 (287)
T ss_pred -CCCCcCC
Confidence 9999997
No 89
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=1.2e-37 Score=279.49 Aligned_cols=180 Identities=33% Similarity=0.565 Sum_probs=164.8
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHH
Q 017331 11 VLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKF 90 (373)
Q Consensus 11 v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 90 (373)
+.++++++|++|+||+|++.|++|.+|+++|.++++.++.|+++++|||||.|+.||+|+|++++........ ....+
T Consensus 1 i~~~~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~--~~~~~ 78 (195)
T cd06558 1 VLVERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGE--EARAF 78 (195)
T ss_pred CEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccch--hHHHH
Confidence 4678889999999999999999999999999999999999999999999999999999999999876432211 24567
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc--------
Q 017331 91 FSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-------- 162 (373)
Q Consensus 91 ~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g-------- 162 (373)
...++.++..+..++||+||+|||+|+|+|+.++++||+||++++++|++||+++|++|++|++++|++++|
T Consensus 79 ~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~ 158 (195)
T cd06558 79 IRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL 158 (195)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence 788889999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccCCCccHHHHHHcCccceecCcCcHHHHH
Q 017331 163 FFGARLDGAEMRACGLATHFVPSSRLALLE 192 (373)
Q Consensus 163 l~G~~i~a~eA~~~GLv~~vv~~~~l~~~~ 192 (373)
++|+.++|+||+++|||+++++.+++....
T Consensus 159 l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a 188 (195)
T cd06558 159 LTGRRISAEEALELGLVDEVVPDEELLAAA 188 (195)
T ss_pred HcCCccCHHHHHHcCCCCeecChhHHHHHH
Confidence 789999999999999999999997775433
No 90
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=3.8e-37 Score=312.13 Aligned_cols=188 Identities=18% Similarity=0.242 Sum_probs=156.5
Q ss_pred CCCCCCCcEEEEEeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHH-cCCCceEEEEecC-CCcccccc
Q 017331 3 SAQSQEDQVLEEETSFVRILTLNRPR----------QLNALSAQMISRLLELFQRYE-TDSNVKLLILKGK-GRAFCAGG 70 (373)
Q Consensus 3 ~~~~~~~~v~~~~~~~v~~i~lnrp~----------~~Nal~~~~~~eL~~~l~~~~-~d~~v~~vVltg~-g~~F~aG~ 70 (373)
+.+..+++|.++++++|++|+||||+ ++|++|.+|+.+|.++|+.++ .|+++|+|||||. |++||+|+
T Consensus 5 ~~~~~~~~v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~ 84 (546)
T TIGR03222 5 TEPSQYRHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGA 84 (546)
T ss_pred CCCCCCceEEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCc
Confidence 34456788999999999999999976 899999999999999999999 7899999999987 49999999
Q ss_pred ChhHHhhhccCCChhhHHHHHH-HHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCC--eeEeccccc-cc
Q 017331 71 DVAAVVRGINEGDWISGAKFFS-KEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATEN--SVFAMPETA-LG 146 (373)
Q Consensus 71 Dl~~~~~~~~~~~~~~~~~~~~-~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~--a~f~~pe~~-~G 146 (373)
|++++........ .....+.. ....+...+.++||||||+|||+|+|||++|+++||+||++++ ++|++||++ +|
T Consensus 85 DL~~~~~~~~~~~-~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lG 163 (546)
T TIGR03222 85 NIFMLGLSTHAWK-VNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLG 163 (546)
T ss_pred CHHHHhccccchh-hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccC
Confidence 9998753211111 01111111 1123455677899999999999999999999999999999986 799999997 99
Q ss_pred ccCCcchHHHHh--hhcc--------ccCCCccHHHHHHcCccceecCcCcHHHH
Q 017331 147 LFPDIGASYFLS--RLPG--------FFGARLDGAEMRACGLATHFVPSSRLALL 191 (373)
Q Consensus 147 ~~p~~g~~~~L~--rl~g--------l~G~~i~a~eA~~~GLv~~vv~~~~l~~~ 191 (373)
++|++|++.+++ +.+| ++|+.++|+||+++|||+++||++++...
T Consensus 164 l~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~ 218 (546)
T TIGR03222 164 VLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAA 218 (546)
T ss_pred cCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHH
Confidence 999999988887 5666 78999999999999999999998887543
No 91
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=2.7e-36 Score=306.84 Aligned_cols=186 Identities=19% Similarity=0.246 Sum_probs=155.3
Q ss_pred CCCCCCcEEEEEeCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHH-cCCCceEEEEecCC-CccccccC
Q 017331 4 AQSQEDQVLEEETSFVRILTLNRP-------R---QLNALSAQMISRLLELFQRYE-TDSNVKLLILKGKG-RAFCAGGD 71 (373)
Q Consensus 4 ~~~~~~~v~~~~~~~v~~i~lnrp-------~---~~Nal~~~~~~eL~~~l~~~~-~d~~v~~vVltg~g-~~F~aG~D 71 (373)
..+.++++.++++++|++|+|||| + ++|+||.+|+.+|.++++.++ .|++||+|||||.+ ++||+|+|
T Consensus 10 ~~~~~~~~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~D 89 (550)
T PRK08184 10 EPSQYRHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGAN 89 (550)
T ss_pred CCCCCceEEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccC
Confidence 345688899999999999999965 4 899999999999999999998 78999999999985 99999999
Q ss_pred hhHHhhhccCCChhhHHHHHHH-HHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCC--eeEeccccc-ccc
Q 017331 72 VAAVVRGINEGDWISGAKFFSK-EFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATEN--SVFAMPETA-LGL 147 (373)
Q Consensus 72 l~~~~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~--a~f~~pe~~-~G~ 147 (373)
++.+........ .....+... ...+...+.++||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|+
T Consensus 90 L~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl 168 (550)
T PRK08184 90 IFMLGGSSHAWK-VNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGV 168 (550)
T ss_pred HHhHhccccchh-hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhcccc
Confidence 998754211110 001111111 122445678899999999999999999999999999999987 899999997 999
Q ss_pred cCCcchHHHHh--hhcc--------ccCCCccHHHHHHcCccceecCcCcHHH
Q 017331 148 FPDIGASYFLS--RLPG--------FFGARLDGAEMRACGLATHFVPSSRLAL 190 (373)
Q Consensus 148 ~p~~g~~~~L~--rl~g--------l~G~~i~a~eA~~~GLv~~vv~~~~l~~ 190 (373)
+|++|++++|+ +++| ++|+.++|+||+++|||+++||++++..
T Consensus 169 ~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~ 221 (550)
T PRK08184 169 LPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDA 221 (550)
T ss_pred CCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHH
Confidence 99999999888 6677 6899999999999999999999887744
No 92
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=99.90 E-value=1.1e-23 Score=173.43 Aligned_cols=115 Identities=45% Similarity=0.858 Sum_probs=99.1
Q ss_pred hHHHHHHHhcCcCCHHHHHHHHHhcccccccHHHHHHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhh
Q 017331 226 HWMDVIDKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMM 305 (373)
Q Consensus 226 ~~~~~i~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~ 305 (373)
.....|++||+.+|++||+++|++ ..++|++++++.|.++||+|+++|.++++++...++.++++.|+++..+++.
T Consensus 4 ~~~~~I~~~F~~~s~~eI~~~L~~----~~~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~ 79 (118)
T PF13766_consen 4 EHLEAIDRCFSADSVEEIIEALEA----DGDEWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMR 79 (118)
T ss_dssp HCHHHHHHHTTSSSHHHHHHHHHH----HS-HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHc----cCcHHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhc
Confidence 456899999999999999999999 4579999999999999999999999999999999999999999999999997
Q ss_pred CCCCCcHHhhHhhhhccCCCCCCCCCCCccCCCHHHHHhhcc
Q 017331 306 GEVSKDFFEGCRAILLDKDKNPKWKPSKLELVNDNMVDQYFS 347 (373)
Q Consensus 306 ~~~s~d~~egi~a~l~eK~r~P~w~~~~~~~v~~~~i~~~~~ 347 (373)
.+ ||.|||+|.|+||++.|+|+++++++|+++.|++||+
T Consensus 80 ~~---DF~EGVRA~LIDKd~~P~W~p~~l~~V~~~~V~~~f~ 118 (118)
T PF13766_consen 80 HP---DFAEGVRALLIDKDKNPKWSPASLEDVSDEDVDSFFE 118 (118)
T ss_dssp CS---CHHHHHHHHTTS-------SSSSCCCS-HHHHHHHCS
T ss_pred cc---hHHHHHHHHHhcCCCCCCCCCCChHHCCHHHHHHHhC
Confidence 65 9999999999999999999999999999999999996
No 93
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.77 E-value=1.7e-18 Score=153.25 Aligned_cols=133 Identities=17% Similarity=0.088 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEEccc
Q 017331 36 QMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSILNGI 115 (373)
Q Consensus 36 ~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~ 115 (373)
-.+.+|.++++.+..|++|++|||++ +|.|+|+.... .+.+++..+.+++||+||+|||.
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~----------------~~~~~i~~~~~~~kpVia~v~G~ 81 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE----------------VIRAELAAARAAGKPVVASGGGN 81 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH----------------HHHHHHHHHHhCCCCEEEEECCc
Confidence 35789999999999999999999987 68998876421 12345566778999999999999
Q ss_pred ccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHH--------HHhhhcc----------ccCCCccHHHHHHcC
Q 017331 116 VMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASY--------FLSRLPG----------FFGARLDGAEMRACG 177 (373)
Q Consensus 116 a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~--------~L~rl~g----------l~G~~i~a~eA~~~G 177 (373)
|.|+|+.|+++||+++++++++|+++.+..+..+...... .+++..| ..|..++|++|++.|
T Consensus 82 a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~G 161 (177)
T cd07014 82 AASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANG 161 (177)
T ss_pred hhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcC
Confidence 9999999999999999999999999987766433222222 3344444 367889999999999
Q ss_pred ccceecCcCcH
Q 017331 178 LATHFVPSSRL 188 (373)
Q Consensus 178 Lv~~vv~~~~l 188 (373)
|||++.+.+++
T Consensus 162 LVD~v~~~~e~ 172 (177)
T cd07014 162 LVDSLGSFDDA 172 (177)
T ss_pred CcccCCCHHHH
Confidence 99999987665
No 94
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.74 E-value=1.9e-17 Score=147.76 Aligned_cols=140 Identities=13% Similarity=0.081 Sum_probs=108.9
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHH
Q 017331 20 RILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNY 99 (373)
Q Consensus 20 ~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (373)
++|.|+.+ ++..+...+.+.|+.+..|+ ++.|+|. .=|.|+++..-. .++.
T Consensus 2 ~vv~i~g~-----I~~~~~~~l~~~l~~a~~~~-~~~vvl~----InSpGG~v~~~~-------------------~i~~ 52 (187)
T cd07020 2 YVLEINGA-----ITPATADYLERAIDQAEEGG-ADALIIE----LDTPGGLLDSTR-------------------EIVQ 52 (187)
T ss_pred EEEEEeeE-----EChHHHHHHHHHHHHHHhCC-CCEEEEE----EECCCCCHHHHH-------------------HHHH
Confidence 45666533 66777888999999988664 7888875 225666665311 2344
Q ss_pred HHHhCCCcEEEEEc---ccccchHhHhhhcCCeEEEeCCeeEecccccccccCCc--------------chHHHHhhhcc
Q 017331 100 LMATYTKPQVSILN---GIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDI--------------GASYFLSRLPG 162 (373)
Q Consensus 100 ~i~~~~kP~Iaavn---G~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~--------------g~~~~L~rl~g 162 (373)
.|..+|||+||+|+ |+|.|||+.|+++||+++++++++|+++++..|..+.. +....+++..|
T Consensus 53 ~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G 132 (187)
T cd07020 53 AILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRG 132 (187)
T ss_pred HHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56689999999999 99999999999999999999999999999985544432 23446777766
Q ss_pred ----------ccCCCccHHHHHHcCccceecCcC-cH
Q 017331 163 ----------FFGARLDGAEMRACGLATHFVPSS-RL 188 (373)
Q Consensus 163 ----------l~G~~i~a~eA~~~GLv~~vv~~~-~l 188 (373)
++|+.++|+||+++||||+++++. ++
T Consensus 133 ~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~ 169 (187)
T cd07020 133 RNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNEL 169 (187)
T ss_pred CCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHH
Confidence 579999999999999999999885 44
No 95
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.69 E-value=1.4e-16 Score=144.95 Aligned_cols=102 Identities=18% Similarity=0.131 Sum_probs=81.5
Q ss_pred CEEEEEEcCC--CCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHH
Q 017331 18 FVRILTLNRP--RQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEF 95 (373)
Q Consensus 18 ~v~~i~lnrp--~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 95 (373)
+|++|.++.| ++.+..+..++.+|.++|+.+..|++|++|||+ .||+|+|+..+.. ++
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~----------------~~ 60 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV----------------IR 60 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH----------------HH
Confidence 3555555543 122333455789999999999999999999997 7999999976431 12
Q ss_pred HHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEe
Q 017331 96 ILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFA 139 (373)
Q Consensus 96 ~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~ 139 (373)
+.+..+..++||+||+++|.|.|+|+.|+++||++++++++.|+
T Consensus 61 ~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~g 104 (211)
T cd07019 61 AELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTG 104 (211)
T ss_pred HHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEE
Confidence 34566778899999999999999999999999999999999887
No 96
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.54 E-value=8.7e-14 Score=126.86 Aligned_cols=96 Identities=19% Similarity=0.150 Sum_probs=74.5
Q ss_pred cCCCCCCC-CCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHh
Q 017331 25 NRPRQLNA-LSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMAT 103 (373)
Q Consensus 25 nrp~~~Na-l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 103 (373)
++|...|+ ++..++.+|.++|+.++.|++|++|||+. +|.|+++.... .+...+..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~~----------------~l~~~l~~~~~ 72 (214)
T cd07022 13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGVF----------------ELADAIRAARA 72 (214)
T ss_pred CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHHH----------------HHHHHHHHHhc
Confidence 45555565 45789999999999999999999999974 56676654321 12222333334
Q ss_pred CCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecc
Q 017331 104 YTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMP 141 (373)
Q Consensus 104 ~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~p 141 (373)
+|||||+++|.|.|+|+.|+++||++++++++.|+..
T Consensus 73 -~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~i 109 (214)
T cd07022 73 -GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSI 109 (214)
T ss_pred -CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEee
Confidence 6999999999999999999999999999999988643
No 97
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.52 E-value=8e-14 Score=121.34 Aligned_cols=127 Identities=17% Similarity=0.155 Sum_probs=97.8
Q ss_pred CCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 017331 33 LSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSIL 112 (373)
Q Consensus 33 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav 112 (373)
++..+..+|.+.|+.++.|+.+++|+|+. .|.|+|+... ..+...|..++||+|+.+
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~-------------------~~i~~~l~~~~kpvva~~ 64 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG-------------------MNIVDALQASRKPVIAYV 64 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH-------------------HHHHHHHHHhCCCEEEEE
Confidence 56688999999999999999999999965 5778776532 123445667889999999
Q ss_pred cccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchH------HH----Hhhhcc-----------------ccC
Q 017331 113 NGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGAS------YF----LSRLPG-----------------FFG 165 (373)
Q Consensus 113 nG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~------~~----L~rl~g-----------------l~G 165 (373)
+|.|.++|+.|+++||.|++.+++.|++..+..+.....+-. .. ..+... ..|
T Consensus 65 ~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~ 144 (161)
T cd00394 65 GGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKD 144 (161)
T ss_pred CChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCC
Confidence 999999999999999999999999999988876554322000 01 111111 246
Q ss_pred CCccHHHHHHcCcccee
Q 017331 166 ARLDGAEMRACGLATHF 182 (373)
Q Consensus 166 ~~i~a~eA~~~GLv~~v 182 (373)
..++|+||+++||||++
T Consensus 145 ~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 145 LVLTAQEALEYGLVDAL 161 (161)
T ss_pred cEEcHHHHHHcCCcCcC
Confidence 78999999999999975
No 98
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.52 E-value=1.1e-13 Score=125.78 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=79.8
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHH
Q 017331 19 VRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILN 98 (373)
Q Consensus 19 v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (373)
|++|.++.+=... ...++.+|.++|+.++.|+++++|||++ +|.|+|+.... .+++.+
T Consensus 2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~~----------------~i~~~i 59 (208)
T cd07023 2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVASE----------------EIYREI 59 (208)
T ss_pred EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHHH----------------HHHHHH
Confidence 5666666441101 3679999999999999999999999987 58899886521 123345
Q ss_pred HHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEec
Q 017331 99 YLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAM 140 (373)
Q Consensus 99 ~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~ 140 (373)
..+..++||+||+++|.|.|+|+.|+++||++++++.+.|+.
T Consensus 60 ~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~ 101 (208)
T cd07023 60 RRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGS 101 (208)
T ss_pred HHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEe
Confidence 667788999999999999999999999999999999998863
No 99
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.42 E-value=1.1e-12 Score=135.94 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=112.1
Q ss_pred EeCCEEEEEEcCCCC--CCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHH
Q 017331 15 ETSFVRILTLNRPRQ--LNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFS 92 (373)
Q Consensus 15 ~~~~v~~i~lnrp~~--~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 92 (373)
.++.|++|.++.+=. .+..+....+.+.+.|+.+..|++|++|||+-. |.|++.... .
T Consensus 306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrin----SpGGs~~as----------------e 365 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRIN----SPGGSVFAS----------------E 365 (584)
T ss_pred CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEec----CCCCCHHHH----------------H
Confidence 468899999997632 344444456778888999999999999999853 334433210 0
Q ss_pred HHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeE------eccc------ccccccCCcchHHHHhh-
Q 017331 93 KEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVF------AMPE------TALGLFPDIGASYFLSR- 159 (373)
Q Consensus 93 ~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f------~~pe------~~~G~~p~~g~~~~L~r- 159 (373)
.+++.+..+...+||+||.++|.|.+||+.++++||.++|++.+.+ +++. .++|+.|+...+..+.+
T Consensus 366 ~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~ 445 (584)
T TIGR00705 366 IIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANV 445 (584)
T ss_pred HHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCC
Confidence 1122334455678999999999999999999999999999999877 5553 58999887666554432
Q ss_pred ---------------------------hcc-------------ccCCCccHHHHHHcCccceecCcCc
Q 017331 160 ---------------------------LPG-------------FFGARLDGAEMRACGLATHFVPSSR 187 (373)
Q Consensus 160 ---------------------------l~g-------------l~G~~i~a~eA~~~GLv~~vv~~~~ 187 (373)
.++ ..|+.++|++|+++||||++..-++
T Consensus 446 s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~~~~ 513 (584)
T TIGR00705 446 SLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGGLDE 513 (584)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCCHHH
Confidence 221 5789999999999999999964333
No 100
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.41 E-value=2.6e-12 Score=116.55 Aligned_cols=93 Identities=20% Similarity=0.293 Sum_probs=72.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHH
Q 017331 19 VRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILN 98 (373)
Q Consensus 19 v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (373)
|++|.++.+= + ....+|.++|+.+..|+++++|||++. |.|+++... ..+.
T Consensus 2 v~vi~i~g~i-----~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~-------------------~~l~ 52 (207)
T TIGR00706 2 IAILPVSGAI-----A-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS-------------------EEIY 52 (207)
T ss_pred EEEEEEEEEE-----e-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH-------------------HHHH
Confidence 5566665442 1 235788999999999999999999874 778877542 1233
Q ss_pred HHHHhCC--CcEEEEEcccccchHhHhhhcCCeEEEeCCeeEec
Q 017331 99 YLMATYT--KPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAM 140 (373)
Q Consensus 99 ~~i~~~~--kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~ 140 (373)
..|..++ ||+||+++|.|.|+|+.|+++||.+++++++.|+.
T Consensus 53 ~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~ 96 (207)
T TIGR00706 53 EKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGS 96 (207)
T ss_pred HHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEe
Confidence 4455555 99999999999999999999999999999988764
No 101
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.39 E-value=1.7e-12 Score=113.02 Aligned_cols=121 Identities=13% Similarity=0.200 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEEccc
Q 017331 36 QMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSILNGI 115 (373)
Q Consensus 36 ~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~ 115 (373)
.+.+++.+.|..+..+..+. +.|. |.|+++..- ..+...|..++||+|+.++|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i~-l~in------spGG~~~~~-------------------~~i~~~i~~~~~pvi~~v~g~ 68 (160)
T cd07016 15 VTAKEFKDALDALGDDSDIT-VRIN------SPGGDVFAG-------------------LAIYNALKRHKGKVTVKIDGL 68 (160)
T ss_pred cCHHHHHHHHHhccCCCCEE-EEEE------CCCCCHHHH-------------------HHHHHHHHhcCCCEEEEEcch
Confidence 46778888888888764433 3333 445554321 234566778899999999999
Q ss_pred ccchHhHhhhcCCeEEEeCCeeEecccccccccCCcch---------------HHHHhhhcc---------cc-CCCccH
Q 017331 116 VMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGA---------------SYFLSRLPG---------FF-GARLDG 170 (373)
Q Consensus 116 a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~---------------~~~L~rl~g---------l~-G~~i~a 170 (373)
|.|+|+.|+++||+|+++++++|+++....|..+.... ...+.+..| +. +..+++
T Consensus 69 a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a 148 (160)
T cd07016 69 AASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTA 148 (160)
T ss_pred HHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcH
Confidence 99999999999999999999999998877665443321 222555555 33 457999
Q ss_pred HHHHHcCcccee
Q 017331 171 AEMRACGLATHF 182 (373)
Q Consensus 171 ~eA~~~GLv~~v 182 (373)
+||+++||||++
T Consensus 149 ~eA~~~GliD~v 160 (160)
T cd07016 149 QEAVELGFADEI 160 (160)
T ss_pred HHHHHcCCCCcC
Confidence 999999999975
No 102
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.30 E-value=1.3e-11 Score=113.15 Aligned_cols=89 Identities=13% Similarity=0.099 Sum_probs=73.7
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEE
Q 017331 32 ALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSI 111 (373)
Q Consensus 32 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaa 111 (373)
.-+..++.+|.++|+++..|++|++|||+..+..| ++.++.++. +.+..+...+||+||.
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el~-------------------~~i~~~~~~~kpVia~ 84 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEELR-------------------QALERFRASGKPVIAY 84 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHHH-------------------HHHHHHHHhCCeEEEE
Confidence 34567889999999999999999999999988666 666666542 2334455579999999
Q ss_pred EcccccchHhHhhhcCCeEEEeCCeeEecc
Q 017331 112 LNGIVMGGGAGVSIHGRFRVATENSVFAMP 141 (373)
Q Consensus 112 vnG~a~GgG~~lala~D~ria~~~a~f~~p 141 (373)
++| |.+||+.|+++||.+++.+.+.|+..
T Consensus 85 ~~~-~~sggy~lasaad~I~a~p~~~vg~i 113 (222)
T cd07018 85 ADG-YSQGQYYLASAADEIYLNPSGSVELT 113 (222)
T ss_pred eCC-CCchhhhhhhhCCEEEECCCceEEee
Confidence 998 88999999999999999999998874
No 103
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.23 E-value=1.2e-10 Score=102.95 Aligned_cols=133 Identities=15% Similarity=0.236 Sum_probs=95.7
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHH
Q 017331 20 RILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNY 99 (373)
Q Consensus 20 ~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (373)
.+|.++. .+++.+...|.++|+.+..++ +..|+|. .=|.|+++... ..+..
T Consensus 2 ~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~----inspGG~v~~~-------------------~~I~~ 52 (178)
T cd07021 2 YVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLD----IDTPGGRVDSA-------------------LEIVD 52 (178)
T ss_pred EEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEE----EECcCCCHHHH-------------------HHHHH
Confidence 3455553 366778888999999998876 6777774 23556665432 23456
Q ss_pred HHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcch--------HHH------Hhhhcc---
Q 017331 100 LMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGA--------SYF------LSRLPG--- 162 (373)
Q Consensus 100 ~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~--------~~~------L~rl~g--- 162 (373)
.|..+++|+|+.|+|.|.++|+.++++||++++++++.|+.+.+- +..|. +.. +++.-|
T Consensus 53 ~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~ 128 (178)
T cd07021 53 LILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRAAAEKKGRDP 128 (178)
T ss_pred HHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHHHHHHhCCCH
Confidence 677899999999999999999999999999999999999988543 33322 111 111112
Q ss_pred -----c-cCC--------------CccHHHHHHcCccceecCc
Q 017331 163 -----F-FGA--------------RLDGAEMRACGLATHFVPS 185 (373)
Q Consensus 163 -----l-~G~--------------~i~a~eA~~~GLv~~vv~~ 185 (373)
+ .-. .++++||++.|++|.++++
T Consensus 129 ~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~ 171 (178)
T cd07021 129 DIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS 171 (178)
T ss_pred HHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC
Confidence 1 112 5999999999999999875
No 104
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.75 E-value=1.6e-07 Score=82.43 Aligned_cols=129 Identities=13% Similarity=0.179 Sum_probs=92.8
Q ss_pred CCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 017331 33 LSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSIL 112 (373)
Q Consensus 33 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav 112 (373)
+++.+...|.+.++.++.| .++.|+|. .=|.|+.+.... .++..|...++||++.|
T Consensus 10 I~~~~~~~l~~~l~~A~~~-~~~~i~l~----inSPGG~v~~~~-------------------~I~~~i~~~~~pvv~~v 65 (172)
T cd07015 10 ITSYTYDQFDRYITIAEQD-NAEAIIIE----LDTPGGRADAAG-------------------NIVQRIQQSKIPVIIYV 65 (172)
T ss_pred ECHhHHHHHHHHHHHHhcC-CCCeEEEE----EECCCCCHHHHH-------------------HHHHHHHhcCcCEEEEE
Confidence 6677888889999988765 56777774 236666665321 23445567899999999
Q ss_pred c---ccccchHhHhhhcCCeEEEeCCeeEecccccccccCC----cc----hHHHHhhhcc---ccC-------------
Q 017331 113 N---GIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPD----IG----ASYFLSRLPG---FFG------------- 165 (373)
Q Consensus 113 n---G~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~----~g----~~~~L~rl~g---l~G------------- 165 (373)
+ |.|..+|.-++++||.+++.++++++....-.|..+. .. .+..+.++-. .+|
T Consensus 66 ~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~ 145 (172)
T cd07015 66 YPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKD 145 (172)
T ss_pred ecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhh
Confidence 9 9999999999999999999999999987764332220 00 0122222211 233
Q ss_pred CCccHHHHHHcCccceecCc
Q 017331 166 ARLDGAEMRACGLATHFVPS 185 (373)
Q Consensus 166 ~~i~a~eA~~~GLv~~vv~~ 185 (373)
..++++||+++|++|.++.+
T Consensus 146 ~~lta~EA~~~G~iD~ia~~ 165 (172)
T cd07015 146 LSLTPEEALKYGVIEVVARD 165 (172)
T ss_pred cCcCHHHHHHcCCceeeeCC
Confidence 56899999999999999986
No 105
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.69 E-value=1.5e-07 Score=81.98 Aligned_cols=127 Identities=17% Similarity=0.186 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 017331 33 LSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSIL 112 (373)
Q Consensus 33 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav 112 (373)
++..+..++.+.|..++.++.++.|+|. .=|.|+++..- ..++..|...++|+++.+
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~----InSpGG~v~~~-------------------~~i~~~i~~~~~~v~~~~ 65 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLY----INSPGGDVFAG-------------------MAIYDTIKFIKADVVTII 65 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEE----EECCCCcHHHH-------------------HHHHHHHHhcCCCceEEE
Confidence 5678889999999999988777777764 23556655321 234455667889999999
Q ss_pred cccccchHhHhhhcCC--eEEEeCCeeEecccccccccCCcchHHHHhhhc---------------c---------cc-C
Q 017331 113 NGIVMGGGAGVSIHGR--FRVATENSVFAMPETALGLFPDIGASYFLSRLP---------------G---------FF-G 165 (373)
Q Consensus 113 nG~a~GgG~~lala~D--~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~---------------g---------l~-G 165 (373)
.|.|.++|.-|+++|| .|++.++++|.+....-|......-.....+.+ | +. +
T Consensus 66 ~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~ 145 (162)
T cd07013 66 DGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERD 145 (162)
T ss_pred EeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCC
Confidence 9999999999999999 688888888876543222211100011111111 1 22 3
Q ss_pred CCccHHHHHHcCcccee
Q 017331 166 ARLDGAEMRACGLATHF 182 (373)
Q Consensus 166 ~~i~a~eA~~~GLv~~v 182 (373)
..++|+||+++||||++
T Consensus 146 ~~~sa~eA~~~GliD~i 162 (162)
T cd07013 146 TWLSAREAVEYGFADTI 162 (162)
T ss_pred ccccHHHHHHcCCCCcC
Confidence 45699999999999975
No 106
>PRK10949 protease 4; Provisional
Probab=98.66 E-value=4.7e-07 Score=94.35 Aligned_cols=150 Identities=17% Similarity=0.184 Sum_probs=98.4
Q ss_pred eCCEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHH
Q 017331 16 TSFVRILTLNRP-----RQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKF 90 (373)
Q Consensus 16 ~~~v~~i~lnrp-----~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 90 (373)
.+.|++|.++.+ ...+.++. +.+.+.|+.+..|++|++|||+-. |.|+.....
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrIn----SpGGs~~as--------------- 382 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVN----SPGGSVTAS--------------- 382 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEec----CCCCcHHHH---------------
Confidence 467888887642 22233444 456777888999999999999754 445443221
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccc------------cccccCCcchH----
Q 017331 91 FSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPET------------ALGLFPDIGAS---- 154 (373)
Q Consensus 91 ~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~------------~~G~~p~~g~~---- 154 (373)
+.+++.+..+....||+||.+.|.|..||+-++++||.++|.+.+..|.--+ ++|+-+++..+
T Consensus 383 -e~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~ 461 (618)
T PRK10949 383 -EVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLA 461 (618)
T ss_pred -HHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccC
Confidence 1222333445567899999999999999999999999999999765443111 23432221111
Q ss_pred -------------HHHhhhcc------------------------ccCCCccHHHHHHcCccceecCcCcH
Q 017331 155 -------------YFLSRLPG------------------------FFGARLDGAEMRACGLATHFVPSSRL 188 (373)
Q Consensus 155 -------------~~L~rl~g------------------------l~G~~i~a~eA~~~GLv~~vv~~~~l 188 (373)
..+...+. ..|+.+++++|++.||||++-.-++.
T Consensus 462 ~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~~GLVD~lG~~~~a 532 (618)
T PRK10949 462 DVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDA 532 (618)
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHHcCCCccCCCHHHH
Confidence 01111111 35899999999999999999775544
No 107
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.53 E-value=9.6e-08 Score=91.29 Aligned_cols=162 Identities=16% Similarity=0.103 Sum_probs=129.5
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChhHHhhhccCCChhhHHHHHHHHHH
Q 017331 18 FVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGDWISGAKFFSKEFI 96 (373)
Q Consensus 18 ~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 96 (373)
+++.+.++ |+. |..|.++.++|..-|+.+..+..+++.++|+.. +.|++|.|..+...... .....++-.+.+
T Consensus 66 ~~~~~dmv-iea-v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h----~fspa~~m~LlE 139 (380)
T KOG1683|consen 66 GFANADMV-IEA-VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMH----FFSPAHWMQLLE 139 (380)
T ss_pred ccccccee-ccc-hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcccc----ccCHHHHHHHHH
Confidence 77888888 664 999999999999999999998888999999988 99999999999875432 233455667788
Q ss_pred HHHHHHhCCCcEEEEEcccccchH--hHhhhcCCeEEEe--CCeeEecccccccc-cCCcchHHH---Hhhhcc----cc
Q 017331 97 LNYLMATYTKPQVSILNGIVMGGG--AGVSIHGRFRVAT--ENSVFAMPETALGL-FPDIGASYF---LSRLPG----FF 164 (373)
Q Consensus 97 l~~~i~~~~kP~IaavnG~a~GgG--~~lala~D~ria~--~~a~f~~pe~~~G~-~p~~g~~~~---L~rl~g----l~ 164 (373)
++...++++.|+.+++||++-.|| +.++.+|+|++.. ..-..+..+...++ +|.+-.-.+ +...+| .-
T Consensus 140 ii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d 219 (380)
T KOG1683|consen 140 IILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALAD 219 (380)
T ss_pred HHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhh
Confidence 999999999999999999999998 8999999999997 45455678888774 333322221 222233 24
Q ss_pred CCCccHHHHHHcCccceecCc
Q 017331 165 GARLDGAEMRACGLATHFVPS 185 (373)
Q Consensus 165 G~~i~a~eA~~~GLv~~vv~~ 185 (373)
|.-++..||++-|+++.+.+.
T Consensus 220 ~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 220 GVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred ccCccHHHHHhhccchhccch
Confidence 677999999999999999984
No 108
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.53 E-value=9.2e-07 Score=79.75 Aligned_cols=127 Identities=20% Similarity=0.188 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 017331 33 LSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSIL 112 (373)
Q Consensus 33 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav 112 (373)
++..+...+...|..++.++..+.|.|. .=|.|+++.. ...++..|...+.|+++.+
T Consensus 40 I~~~~~~~i~~~L~~l~~~~~~~~I~l~----InSpGG~v~~-------------------g~~I~d~i~~~~~~v~t~~ 96 (200)
T PRK00277 40 VEDHMANLIVAQLLFLEAEDPDKDIYLY----INSPGGSVTA-------------------GLAIYDTMQFIKPDVSTIC 96 (200)
T ss_pred ECHHHHHHHHHHHHHhhccCCCCCEEEE----EECCCCcHHH-------------------HHHHHHHHHhcCCCEEEEE
Confidence 6788899999888888765433333332 1244555432 1123445667788999999
Q ss_pred cccccchHhHhhhcCC--eEEEeCCeeEecccccccccCCcchH------------------HHHhhhcc----------
Q 017331 113 NGIVMGGGAGVSIHGR--FRVATENSVFAMPETALGLFPDIGAS------------------YFLSRLPG---------- 162 (373)
Q Consensus 113 nG~a~GgG~~lala~D--~ria~~~a~f~~pe~~~G~~p~~g~~------------------~~L~rl~g---------- 162 (373)
.|.|.++|..|+++++ .|++.++++|.+....-|. .|.. ..++...|
T Consensus 97 ~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~ 173 (200)
T PRK00277 97 IGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF---QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDT 173 (200)
T ss_pred EeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence 9999999999999753 5666666666654433221 1111 11122222
Q ss_pred ccCCCccHHHHHHcCccceecCc
Q 017331 163 FFGARLDGAEMRACGLATHFVPS 185 (373)
Q Consensus 163 l~G~~i~a~eA~~~GLv~~vv~~ 185 (373)
-.+.-++|+||+++||||+|+.+
T Consensus 174 ~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 174 DRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred hCCccccHHHHHHcCCccEEeec
Confidence 12457999999999999999975
No 109
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.40 E-value=2.3e-06 Score=75.24 Aligned_cols=134 Identities=20% Similarity=0.226 Sum_probs=92.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHH
Q 017331 21 ILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYL 100 (373)
Q Consensus 21 ~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (373)
.|.|+.+ ++..+..++...|..+..++..+.|+|. .=|.|+|+..- ..++..
T Consensus 11 ~i~i~g~-----I~~~~~~~i~~~l~~~~~~~~~~~i~l~----inSpGG~v~~~-------------------~~i~~~ 62 (171)
T cd07017 11 IIFLGGP-----IDDEVANLIIAQLLYLESEDPKKPIYLY----INSPGGSVTAG-------------------LAIYDT 62 (171)
T ss_pred EEEEcCE-----EcHHHHHHHHHHHHHHHccCCCCceEEE----EECCCCCHHHH-------------------HHHHHH
Confidence 4555544 6778889999999999877665555553 12556655431 123344
Q ss_pred HHhCCCcEEEEEcccccchHhHhhhcCC--eEEEeCCeeEecccccccccCCcchHH---------------HHhhhcc-
Q 017331 101 MATYTKPQVSILNGIVMGGGAGVSIHGR--FRVATENSVFAMPETALGLFPDIGASY---------------FLSRLPG- 162 (373)
Q Consensus 101 i~~~~kP~IaavnG~a~GgG~~lala~D--~ria~~~a~f~~pe~~~G~~p~~g~~~---------------~L~rl~g- 162 (373)
|...+.|+++.+.|.|.++|.-+++++| .|++.++++|.+.+...+..-...-.. .+....|
T Consensus 63 l~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~ 142 (171)
T cd07017 63 MQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQ 142 (171)
T ss_pred HHhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5567899999999999999999999999 799999999998887655432210000 0111111
Q ss_pred --------c-cCCCccHHHHHHcCcccee
Q 017331 163 --------F-FGARLDGAEMRACGLATHF 182 (373)
Q Consensus 163 --------l-~G~~i~a~eA~~~GLv~~v 182 (373)
+ .+.-++|+||+++||||+|
T Consensus 143 ~~~~i~~~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 143 PLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred CHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence 1 3467999999999999975
No 110
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.40 E-value=1.8e-06 Score=76.67 Aligned_cols=137 Identities=20% Similarity=0.284 Sum_probs=90.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHH
Q 017331 21 ILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYL 100 (373)
Q Consensus 21 ~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (373)
+|.|+.| +|.++...+...|..++..+..+-+.|. .=|.|+|+..- ..++..
T Consensus 18 ~i~l~g~-----I~~~~~~~~~~~L~~l~~~~~~~~i~i~----INSpGG~v~~g-------------------~~i~~~ 69 (182)
T PF00574_consen 18 IIFLNGP-----IDEESANRLISQLLYLENEDKNKPINIY----INSPGGDVDAG-------------------LAIYDA 69 (182)
T ss_dssp EEEEESS-----BSHHHHHHHHHHHHHHHHHTSSSEEEEE----EEECEBCHHHH-------------------HHHHHH
T ss_pred EEEECCc-----cCHHHHHHHHHHHHHHhccCCCceEEEE----EcCCCCccHHH-------------------HHHHHH
Confidence 3555555 7889999999888777433222222221 12567776431 234566
Q ss_pred HHhCCCcEEEEEcccccchHhHhhhcCCe--EEEeCCeeEecccccccccCCcchHH----HH-----------hhhcc-
Q 017331 101 MATYTKPQVSILNGIVMGGGAGVSIHGRF--RVATENSVFAMPETALGLFPDIGASY----FL-----------SRLPG- 162 (373)
Q Consensus 101 i~~~~kP~IaavnG~a~GgG~~lala~D~--ria~~~a~f~~pe~~~G~~p~~g~~~----~L-----------~rl~g- 162 (373)
|..++.|+++.+.|.|.+.|.-++++|+. |++.+++.|.+.+...+......... .+ ....|
T Consensus 70 i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~ 149 (182)
T PF00574_consen 70 IRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGL 149 (182)
T ss_dssp HHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77889999999999999999999999999 89999999999888665533111111 01 11111
Q ss_pred --------c-cCCCccHHHHHHcCccceecCc
Q 017331 163 --------F-FGARLDGAEMRACGLATHFVPS 185 (373)
Q Consensus 163 --------l-~G~~i~a~eA~~~GLv~~vv~~ 185 (373)
+ ...-++|+||+++||||+|+.+
T Consensus 150 ~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 150 SKEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp -HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred cHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 1 1245899999999999999864
No 111
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.38 E-value=5.2e-06 Score=75.24 Aligned_cols=128 Identities=18% Similarity=0.173 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 017331 33 LSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSIL 112 (373)
Q Consensus 33 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav 112 (373)
++..+..++.+.|..++..+..+.|.|. .=|.|+++..- ..++..|..++.|+++.+
T Consensus 44 I~~~~~~~i~~~L~~l~~~~~~~~I~l~----INSpGG~v~~g-------------------~~I~d~i~~~~~~v~t~~ 100 (207)
T PRK12553 44 VDDASANDVMAQLLVLESIDPDRDITLY----INSPGGSVTAG-------------------DAIYDTIQFIRPDVQTVC 100 (207)
T ss_pred ECHHHHHHHHHHHHHHHhCCCCCCEEEE----EeCCCCcHHHH-------------------HHHHHHHHhcCCCcEEEE
Confidence 7889999999999998865433434332 12556665431 124455667788999999
Q ss_pred cccccchHhHhhhcCC--eEEEeCCeeEecccccc-cccCCcchH------------------HHHhhhcc---------
Q 017331 113 NGIVMGGGAGVSIHGR--FRVATENSVFAMPETAL-GLFPDIGAS------------------YFLSRLPG--------- 162 (373)
Q Consensus 113 nG~a~GgG~~lala~D--~ria~~~a~f~~pe~~~-G~~p~~g~~------------------~~L~rl~g--------- 162 (373)
.|.|.++|.-|+++|| .|++.++++|.+..... |. ..|.. ..+.+.-|
T Consensus 101 ~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~ 178 (207)
T PRK12553 101 TGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKD 178 (207)
T ss_pred EeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999999 59999999999876543 21 12211 11222223
Q ss_pred -ccCCCccHHHHHHcCccceecCc
Q 017331 163 -FFGARLDGAEMRACGLATHFVPS 185 (373)
Q Consensus 163 -l~G~~i~a~eA~~~GLv~~vv~~ 185 (373)
-.+..++|+||+++||||+++++
T Consensus 179 ~~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 179 TDRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred HhcCccccHHHHHHcCCccEEcCc
Confidence 13577999999999999999975
No 112
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.36 E-value=1.3e-05 Score=76.53 Aligned_cols=134 Identities=13% Similarity=0.112 Sum_probs=92.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEE
Q 017331 30 LNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQV 109 (373)
Q Consensus 30 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I 109 (373)
.-+++++-.....+.++.+++. .+-+|-|.-++++++ |.+-.+ ......+.+....+....+|+|
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~f-~lPIItlvDTpGA~~-G~~AE~-------------~G~~~aiar~l~~~a~~~VP~I 196 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANKF-GLPILTFIDTPGAWA-GVKAEK-------------LGQGEAIAVNLREMFSFEVPII 196 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCc-CHHHHH-------------HhHHHHHHHHHHHHHcCCCCEE
Confidence 4668899999999999988764 566666654444443 322211 1112344455566778899999
Q ss_pred EEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc-----ccCCCccHHHHHHcCccceecC
Q 017331 110 SILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-----FFGARLDGAEMRACGLATHFVP 184 (373)
Q Consensus 110 aavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g-----l~G~~i~a~eA~~~GLv~~vv~ 184 (373)
++|-|.|.|||.-....||++++.+++.++. .++-|.+..|.+-.. .-.-+++|+++++.|+||+|+|
T Consensus 197 sVViGeggsGGAlal~~aD~V~m~e~a~~sV-------isPEg~a~Il~~d~~~a~~aA~~~~ita~dL~~~giiD~ii~ 269 (322)
T CHL00198 197 CTIIGEGGSGGALGIGIGDSIMMLEYAVYTV-------ATPEACAAILWKDSKKSLDAAEALKITSEDLKVLGIIDEIIP 269 (322)
T ss_pred EEEeCcccHHHHHhhhcCCeEEEeCCeEEEe-------cCHHHHHHHHhcchhhHHHHHHHcCCCHHHHHhCCCCeEecc
Confidence 9999999888865555699999999998763 333444444433322 2336799999999999999998
Q ss_pred c
Q 017331 185 S 185 (373)
Q Consensus 185 ~ 185 (373)
.
T Consensus 270 E 270 (322)
T CHL00198 270 E 270 (322)
T ss_pred C
Confidence 4
No 113
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.35 E-value=3.9e-06 Score=81.02 Aligned_cols=88 Identities=20% Similarity=0.214 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEEccccc
Q 017331 38 ISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSILNGIVM 117 (373)
Q Consensus 38 ~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~ 117 (373)
.+.+.+.|+.+..|+.+++|+|. .=|.|+....- ..+++.+.++..-. |+++.|++.|.
T Consensus 82 ~~~~~~~l~~~~~~~~vk~vvL~----inSPGG~v~as----------------~~i~~~l~~l~~~~-PV~v~v~~~AA 140 (317)
T COG0616 82 GDDIEEILRAARADPSVKAVVLR----INSPGGSVVAS----------------ELIARALKRLRAKK-PVVVSVGGYAA 140 (317)
T ss_pred HHHHHHHHHHHhcCCCCceEEEE----EECcCCchhHH----------------HHHHHHHHHHhhcC-CEEEEECCeec
Confidence 45555667888889999999995 33556655321 12233334444433 99999999999
Q ss_pred chHhHhhhcCCeEEEeCCeeEeccccccc
Q 017331 118 GGGAGVSIHGRFRVATENSVFAMPETALG 146 (373)
Q Consensus 118 GgG~~lala~D~ria~~~a~f~~pe~~~G 146 (373)
.||..+|++||.++|++++..|---+..+
T Consensus 141 SGGY~IA~aAd~I~a~p~si~GSIGVi~~ 169 (317)
T COG0616 141 SGGYYIALAADKIVADPSSITGSIGVISG 169 (317)
T ss_pred chhhhhhccCCEEEecCCceeeeceeEEe
Confidence 99999999999999999998874444333
No 114
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.33 E-value=1e-05 Score=77.90 Aligned_cols=148 Identities=10% Similarity=0.062 Sum_probs=91.4
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHH
Q 017331 16 TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEF 95 (373)
Q Consensus 16 ~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 95 (373)
.+.|++|.++.+=..+ ....+.+++...+.....+ .+|||+-. |.|+.+..... . .
T Consensus 89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLrid----SpGG~v~~s~~---------a-------~ 144 (330)
T PRK11778 89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLE----SPGGVVHGYGL---------A-------A 144 (330)
T ss_pred CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEe----CCCCchhHHHH---------H-------H
Confidence 4678889888652211 1223445666655554432 56777643 44555432110 0 0
Q ss_pred HHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchH---------------------
Q 017331 96 ILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGAS--------------------- 154 (373)
Q Consensus 96 ~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~--------------------- 154 (373)
..+.++....||+|+.+++.|..||+.++++||-++|.+.+.++.--+-.. .|.....
T Consensus 145 ~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a~~ 223 (330)
T PRK11778 145 SQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRTLT 223 (330)
T ss_pred HHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCCCC
Confidence 112345567899999999999999999999999999999887764333111 1111100
Q ss_pred ----------HHHhhhcc----------------------ccCCCccHHHHHHcCccceecCcCcH
Q 017331 155 ----------YFLSRLPG----------------------FFGARLDGAEMRACGLATHFVPSSRL 188 (373)
Q Consensus 155 ----------~~L~rl~g----------------------l~G~~i~a~eA~~~GLv~~vv~~~~l 188 (373)
..+...+. .+|+.++|++|++.||||++...+++
T Consensus 224 pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~ 289 (330)
T PRK11778 224 LFGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDY 289 (330)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHH
Confidence 00111110 35899999999999999999887665
No 115
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.29 E-value=2.3e-05 Score=73.03 Aligned_cols=135 Identities=15% Similarity=0.110 Sum_probs=93.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEE
Q 017331 30 LNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQV 109 (373)
Q Consensus 30 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I 109 (373)
.-+++++-.....+.++.+.+. .+-+|-|.-+++++. |.+-.+ ......+.++...+....+|+|
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpGa~~-g~~aE~-------------~G~~~~ia~~~~~~s~~~VP~I 140 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAGAYP-GVGAEE-------------RGQGEAIARNLMEMSDLKVPII 140 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CHhHHh-------------ccHHHHHHHHHHHHhCCCCCEE
Confidence 4668899999999999988764 566666654444442 332110 1123344566677788999999
Q ss_pred EEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc-----ccCCCccHHHHHHcCccceecC
Q 017331 110 SILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-----FFGARLDGAEMRACGLATHFVP 184 (373)
Q Consensus 110 aavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g-----l~G~~i~a~eA~~~GLv~~vv~ 184 (373)
+.|-|.|.|||......||++++.+++.++. .++-|.+..+.+-.. ..-..+++.++.+.|+||+|++
T Consensus 141 sVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v-------~~pe~~a~il~~~~~~a~~aa~~~~~~a~~l~~~g~iD~ii~ 213 (256)
T PRK12319 141 AIIIGEGGSGGALALAVADQVWMLENTMYAV-------LSPEGFASILWKDGSRATEAAELMKITAGELLEMGVVDKVIP 213 (256)
T ss_pred EEEeCCcCcHHHHHhhcCCEEEEecCceEEE-------cCHHHHHHHHhcCcccHHHHHHHcCCCHHHHHHCCCCcEecC
Confidence 9999999999888888999999999988664 333334433332211 1124679999999999999998
Q ss_pred cC
Q 017331 185 SS 186 (373)
Q Consensus 185 ~~ 186 (373)
+.
T Consensus 214 e~ 215 (256)
T PRK12319 214 EH 215 (256)
T ss_pred CC
Confidence 53
No 116
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.23 E-value=3.4e-05 Score=80.12 Aligned_cols=134 Identities=15% Similarity=0.069 Sum_probs=94.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEE
Q 017331 30 LNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQV 109 (373)
Q Consensus 30 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I 109 (373)
.-++++.-+....+.++.++.. .+-+|-|-=.+++++ |.+..+. .....+.+....+....+|+|
T Consensus 220 fG~~~peGyRKAlRlmkLAekf-gLPIVtLVDTpGA~p-G~~AEe~-------------Gq~~aIArnl~amasl~VP~I 284 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEEL-------------GQGEAIAHNLRTMFGLKVPIV 284 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CchhHHH-------------hHHHHHHHHHHHHhCCCCCEE
Confidence 4577888899999999888764 566666654334333 3222221 122344556677788999999
Q ss_pred EEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc-----ccCCCccHHHHHHcCccceecC
Q 017331 110 SILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-----FFGARLDGAEMRACGLATHFVP 184 (373)
Q Consensus 110 aavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g-----l~G~~i~a~eA~~~GLv~~vv~ 184 (373)
++|-|.|.|||.-....||+++|.+++.++ +.++-|++..|.+-.. .-.-.++|++++++|+||.|+|
T Consensus 285 SVViGeggSGGAlA~g~aD~VlMle~A~~s-------VisPEgaAsILwkd~~~A~eAAe~lkiTa~dL~~lGiiD~IIp 357 (762)
T PLN03229 285 SIVIGEGGSGGALAIGCANKLLMLENAVFY-------VASPEACAAILWKSAKAAPKAAEKLRITAQELCRLQIADGIIP 357 (762)
T ss_pred EEEeCCcchHHHHHhhcCCEEEEecCCeEE-------ecCHHHHHHHHhcCcccHHHHHHHcCCCHHHHHhCCCCeeecc
Confidence 999999988887777779999999988755 4444455544444333 2346799999999999999998
Q ss_pred c
Q 017331 185 S 185 (373)
Q Consensus 185 ~ 185 (373)
.
T Consensus 358 E 358 (762)
T PLN03229 358 E 358 (762)
T ss_pred C
Confidence 4
No 117
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.21 E-value=1.4e-05 Score=71.86 Aligned_cols=130 Identities=16% Similarity=0.162 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 017331 33 LSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSIL 112 (373)
Q Consensus 33 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav 112 (373)
++..+...+.+.|..++..+..+.|+|. .=|.|+++..- ..++..|...+.||++.+
T Consensus 32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~----INSpGG~v~ag-------------------~aI~d~i~~~~~~V~t~v 88 (197)
T PRK14512 32 INKDLSELFQEKILLLEALDSKKPIFVY----IDSEGGDIDAG-------------------FAIFNMIRFVKPKVFTIG 88 (197)
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEE----EECCCCCHHHH-------------------HHHHHHHHhCCCCEEEEE
Confidence 6788889999888877762333333332 12556665431 134455667899999999
Q ss_pred cccccchHhHhhhcCCe--EEEeCCeeEecccccccccCCcchHH---------------HHhhhcc--------c--cC
Q 017331 113 NGIVMGGGAGVSIHGRF--RVATENSVFAMPETALGLFPDIGASY---------------FLSRLPG--------F--FG 165 (373)
Q Consensus 113 nG~a~GgG~~lala~D~--ria~~~a~f~~pe~~~G~~p~~g~~~---------------~L~rl~g--------l--~G 165 (373)
.|.|.+.|.-++++||- |++.++++|.+....-|+.....-.. .++..-| . ..
T Consensus 89 ~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d 168 (197)
T PRK14512 89 VGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRD 168 (197)
T ss_pred EeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcC
Confidence 99999999999999985 89999998876554333211111000 0111112 0 12
Q ss_pred CCccHHHHHHcCccceecCc
Q 017331 166 ARLDGAEMRACGLATHFVPS 185 (373)
Q Consensus 166 ~~i~a~eA~~~GLv~~vv~~ 185 (373)
..++|+||+++||||+|++.
T Consensus 169 ~~lta~EA~~yGliD~I~~~ 188 (197)
T PRK14512 169 FWLDSSSAVKYGLVFEVVET 188 (197)
T ss_pred cccCHHHHHHcCCccEeecC
Confidence 56899999999999999975
No 118
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.20 E-value=2.2e-05 Score=70.71 Aligned_cols=129 Identities=16% Similarity=0.193 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 017331 33 LSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSIL 112 (373)
Q Consensus 33 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav 112 (373)
+|.++..++...|-.++.++..+-+.|. .=|.|+++.. ...++..|...+.|+...+
T Consensus 39 i~~~~a~~ii~~ll~L~~~~~~~~I~l~----INSpGG~v~~-------------------g~aIyd~m~~~~~~V~Tv~ 95 (200)
T CHL00028 39 VDDEIANQLIGLMVYLSIEDDTKDLYLF----INSPGGSVIS-------------------GLAIYDTMQFVKPDVHTIC 95 (200)
T ss_pred ecHHHHHHHHHHHHHHhccCCCCCEEEE----EeCCCcchhh-------------------HHHHHHHHHhcCCCEEEEE
Confidence 8899999999999888754433433331 1255665432 1234556777899999999
Q ss_pred cccccchHhHhhhcCC--eEEEeCCeeEecccccccccCCcch-HH-----------------HHhhhcc--------c-
Q 017331 113 NGIVMGGGAGVSIHGR--FRVATENSVFAMPETALGLFPDIGA-SY-----------------FLSRLPG--------F- 163 (373)
Q Consensus 113 nG~a~GgG~~lala~D--~ria~~~a~f~~pe~~~G~~p~~g~-~~-----------------~L~rl~g--------l- 163 (373)
.|.|.+.|.-|++++| -|++.++++|.+.....|+. .|. +. .++...| .
T Consensus 96 ~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~--~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~ 173 (200)
T CHL00028 96 LGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFY--EGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDM 173 (200)
T ss_pred EEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence 9999999999999999 69999999999877655521 221 11 1111111 1
Q ss_pred -cCCCccHHHHHHcCccceecCcC
Q 017331 164 -FGARLDGAEMRACGLATHFVPSS 186 (373)
Q Consensus 164 -~G~~i~a~eA~~~GLv~~vv~~~ 186 (373)
...-++|+||+++||||+|+.+.
T Consensus 174 ~r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 174 ERDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred hcCccCCHHHHHHcCCCcEEeecC
Confidence 12558999999999999999754
No 119
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.19 E-value=4.3e-05 Score=73.09 Aligned_cols=134 Identities=14% Similarity=0.128 Sum_probs=93.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEE
Q 017331 30 LNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQV 109 (373)
Q Consensus 30 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I 109 (373)
.-+++++-.....+.++.+++ -.+-+|-|.-++++++ |.+-.+ ....+.+.+++..+....+|+|
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~-f~lPIVtlvDTpGa~~-G~~aE~-------------~G~~~aia~~l~~~a~~~VP~I 193 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEK-FGLPIITFIDTPGAYP-GIGAEE-------------RGQSEAIARNLREMARLKVPII 193 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCCCCCC-CHHHHh-------------ccHHHHHHHHHHHHhCCCCCEE
Confidence 456889999999999998876 4567777765444443 332221 1123444566677889999999
Q ss_pred EEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc-----ccCCCccHHHHHHcCccceecC
Q 017331 110 SILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-----FFGARLDGAEMRACGLATHFVP 184 (373)
Q Consensus 110 aavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g-----l~G~~i~a~eA~~~GLv~~vv~ 184 (373)
++|-|.|.|||.-....||++++.+++.++ +.++-|++..|.+-.. .....+++.++.+.|+||.|++
T Consensus 194 sVIiGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~~~~a~~aae~~~ita~~l~~~g~iD~II~ 266 (319)
T PRK05724 194 CTVIGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKDASKAPEAAEAMKITAQDLKELGIIDEIIP 266 (319)
T ss_pred EEEeCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcCchhHHHHHHHcCCCHHHHHHCCCceEecc
Confidence 999999987776555569999999988765 4555555555544322 1235689999999999999998
Q ss_pred c
Q 017331 185 S 185 (373)
Q Consensus 185 ~ 185 (373)
.
T Consensus 267 E 267 (319)
T PRK05724 267 E 267 (319)
T ss_pred C
Confidence 4
No 120
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.16 E-value=6.1e-05 Score=71.96 Aligned_cols=134 Identities=15% Similarity=0.113 Sum_probs=91.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEE
Q 017331 30 LNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQV 109 (373)
Q Consensus 30 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I 109 (373)
.-+++++-.....+.++.++.- .+-+|-|.-++++++ |.+..+. .....+.++...+....+|+|
T Consensus 129 ~G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~~-------------G~~~aia~~l~a~s~~~VP~I 193 (316)
T TIGR00513 129 FGMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEER-------------GQSEAIARNLREMARLGVPVI 193 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHHH-------------HHHHHHHHHHHHHHcCCCCEE
Confidence 4668899999999999988764 566666654444333 3222211 122344556667788999999
Q ss_pred EEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc-----ccCCCccHHHHHHcCccceecC
Q 017331 110 SILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-----FFGARLDGAEMRACGLATHFVP 184 (373)
Q Consensus 110 aavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g-----l~G~~i~a~eA~~~GLv~~vv~ 184 (373)
++|-|.|.|||..-...||++++.+++.++ +.++-|++..|.+-.. .--..+++.++.+.|+||.|+|
T Consensus 194 sVViGeggsGGAla~~~aD~v~m~~~a~~s-------VisPEg~a~Il~kd~~~a~~aae~~~~ta~~l~~~G~iD~II~ 266 (316)
T TIGR00513 194 CTVIGEGGSGGALAIGVGDKVNMLEYSTYS-------VISPEGCAAILWKDASKAPKAAEAMKITAPDLKELGLIDSIIP 266 (316)
T ss_pred EEEecccccHHHhhhccCCEEEEecCceEE-------ecCHHHHHHHhccchhhHHHHHHHccCCHHHHHHCCCCeEecc
Confidence 999999977777545569999999998765 4444444444433221 1124678999999999999998
Q ss_pred c
Q 017331 185 S 185 (373)
Q Consensus 185 ~ 185 (373)
.
T Consensus 267 e 267 (316)
T TIGR00513 267 E 267 (316)
T ss_pred C
Confidence 4
No 121
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.08 E-value=5.9e-05 Score=69.94 Aligned_cols=96 Identities=16% Similarity=0.209 Sum_probs=76.9
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEE
Q 017331 31 NALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVS 110 (373)
Q Consensus 31 Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia 110 (373)
+.++.+...++.++++....+..+-. +|. +.|+++..- .++...|.+.+.|+++
T Consensus 70 ~~I~i~dse~v~raI~~~~~~~~IdL-ii~------TpGG~v~AA-------------------~~I~~~l~~~~~~v~v 123 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKDKPIDL-IIH------TPGGLVDAA-------------------EQIARALREHPAKVTV 123 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCCCceEE-EEE------CCCCcHHHH-------------------HHHHHHHHhCCCCEEE
Confidence 56888999999999998877655533 333 345555421 2344567788999999
Q ss_pred EEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcc
Q 017331 111 ILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIG 152 (373)
Q Consensus 111 avnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g 152 (373)
.|++.|+.||.-+|++||-+++++.+.+|--+.++|-.|..+
T Consensus 124 ~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~s 165 (285)
T PF01972_consen 124 IVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAAS 165 (285)
T ss_pred EECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHH
Confidence 999999999999999999999999999999999999888644
No 122
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.08 E-value=0.00012 Score=71.93 Aligned_cols=133 Identities=17% Similarity=0.118 Sum_probs=90.2
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEE
Q 017331 31 NALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVS 110 (373)
Q Consensus 31 Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia 110 (373)
.+++++-.....+.++.++.. .+-+|-|.-+++++ .|.+..+ ......+.+.+..+....+|+|+
T Consensus 200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTpGA~-pG~~AEe-------------~Gqa~aIAr~l~ams~l~VPiIS 264 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTPGAY-AGIKAEE-------------LGQGEAIAFNLREMFGLRVPIIA 264 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcC-CCHHHHH-------------HhHHHHHHHHHHHHhcCCCCEEE
Confidence 468899999999999988864 56666665443333 2322221 11223445566777889999999
Q ss_pred EEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc-----ccCCCccHHHHHHcCccceecCc
Q 017331 111 ILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-----FFGARLDGAEMRACGLATHFVPS 185 (373)
Q Consensus 111 avnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g-----l~G~~i~a~eA~~~GLv~~vv~~ 185 (373)
.|-|.+.|||.....+||+++|.+++.++ +.++-|.+..|.+-.. .-.-.++|.++++.|+||+|++.
T Consensus 265 VViGeGgSGGAlalg~aD~VlMle~A~ys-------VisPEgaAsILwkd~~~A~eAAealkitA~dL~~~GiID~II~E 337 (431)
T PLN03230 265 TVIGEGGSGGALAIGCGNRMLMMENAVYY-------VASPEACAAILWKSAAAAPKAAEALRITAAELVKLGVVDEIVPE 337 (431)
T ss_pred EEeCCCCcHHHHHhhcCCEEEEecCCEEE-------ecCHHHHHHHHhccccchHHHHHHcCCCHHHHHhCCCCeEeccC
Confidence 99999966665555578999999998765 3333344444433221 12347999999999999999984
No 123
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.07 E-value=7.9e-05 Score=66.70 Aligned_cols=129 Identities=16% Similarity=0.114 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 017331 33 LSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSIL 112 (373)
Q Consensus 33 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav 112 (373)
++..+..++...|..++.++..+-|+|. .=|.|+|+..- ..++..|...+.|+...+
T Consensus 35 I~~~~~~~ii~~L~~l~~~~~~~~i~l~----InSpGG~v~~g-------------------~~I~d~l~~~~~~v~t~~ 91 (191)
T TIGR00493 35 VNDSVANLIVAQLLFLEAEDPEKDIYLY----INSPGGSITAG-------------------LAIYDTMQFIKPDVSTIC 91 (191)
T ss_pred EChHHHHHHHHHHHHhhccCCCCCEEEE----EECCCCCHHHH-------------------HHHHHHHHhcCCCEEEEE
Confidence 6677888888888888765544444432 12456665321 123345566677788888
Q ss_pred cccccchHhHhhhcCC--eEEEeCCeeEecccccccccCCcchH----HH-----------Hhhhcc----------ccC
Q 017331 113 NGIVMGGGAGVSIHGR--FRVATENSVFAMPETALGLFPDIGAS----YF-----------LSRLPG----------FFG 165 (373)
Q Consensus 113 nG~a~GgG~~lala~D--~ria~~~a~f~~pe~~~G~~p~~g~~----~~-----------L~rl~g----------l~G 165 (373)
.|.|.+.|.-+++++| .|++.++++|.+....-|......-. .. +++.-| -.+
T Consensus 92 ~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~ 171 (191)
T TIGR00493 92 IGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERD 171 (191)
T ss_pred EEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCC
Confidence 8999999999998766 69999999999877654432111111 01 112222 124
Q ss_pred CCccHHHHHHcCccceecC
Q 017331 166 ARLDGAEMRACGLATHFVP 184 (373)
Q Consensus 166 ~~i~a~eA~~~GLv~~vv~ 184 (373)
..++|+||+++||+|+++.
T Consensus 172 ~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 172 FFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred ccCcHHHHHHcCCccEEec
Confidence 6799999999999999874
No 124
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=98.04 E-value=0.00049 Score=64.70 Aligned_cols=143 Identities=12% Similarity=0.095 Sum_probs=88.0
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcC----CCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHH
Q 017331 19 VRILTLNRPRQLNALSAQMISRLLELFQRYETD----SNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKE 94 (373)
Q Consensus 19 v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d----~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 94 (373)
|.++-.+..-..-++....-..+.++++.+.+| ..+-+|.|.-+| |+-+.+-. ..+..+. ..
T Consensus 61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSg-----GaRlqEg~--------~~L~~~a-~i 126 (274)
T TIGR03133 61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTG-----GVRLQEAN--------AGLIAIA-EI 126 (274)
T ss_pred EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCC-----CcChhhhH--------HHHHHHH-HH
Confidence 344444444455678878888888988888652 223466665433 34343211 0111111 12
Q ss_pred HHHHHHHHhCCCcEEEEEccc--ccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc----------
Q 017331 95 FILNYLMATYTKPQVSILNGI--VMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG---------- 162 (373)
Q Consensus 95 ~~l~~~i~~~~kP~IaavnG~--a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g---------- 162 (373)
...+..+... .|+|+.|.|+ |.||+..++.+||++|+++++++++.-. ..+....|
T Consensus 127 ~~~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP-----------~VIe~~~G~e~~~~~d~~ 194 (274)
T TIGR03133 127 MRAILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGP-----------EVIEQEAGVEEFDSRDRA 194 (274)
T ss_pred HHHHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCH-----------HHHHHhcCCCccCHHHhc
Confidence 2223334444 9999999999 8999999999999999999987775211 11111111
Q ss_pred ccCCCccHHHHHHcCccceecCcCc
Q 017331 163 FFGARLDGAEMRACGLATHFVPSSR 187 (373)
Q Consensus 163 l~G~~i~a~eA~~~GLv~~vv~~~~ 187 (373)
+.-+.+.++.....|++|.+++++.
T Consensus 195 l~~~~lGG~~~~~sG~~D~~v~dd~ 219 (274)
T TIGR03133 195 LVWRTTGGKHRFLSGDADVLVEDDV 219 (274)
T ss_pred ccccccchHhHhhcccceEEeCCHH
Confidence 2223466677888999999998754
No 125
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.00 E-value=7e-05 Score=67.18 Aligned_cols=131 Identities=16% Similarity=0.106 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 017331 33 LSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSIL 112 (373)
Q Consensus 33 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav 112 (373)
++.++..++...|..++.++..+-+.|. .=|.|+++..- ..++..|...+-|+...+
T Consensus 34 i~~~~a~~ii~~Ll~l~~~~~~~~I~l~----INSpGG~v~~g-------------------~aIyd~m~~~~~~V~t~~ 90 (196)
T PRK12551 34 VTSDSANRIVAQLLFLEAEDPEKDIYLY----INSPGGSVYDG-------------------LGIFDTMQHVKPDVHTVC 90 (196)
T ss_pred ecHHHHHHHHHHHHHhhccCCCCCEEEE----EeCCCcchhhH-------------------HHHHHHHHhcCCCEEEEE
Confidence 7888999999998888754332333331 12556665431 134455667788999999
Q ss_pred cccccchHhHhhhcCCe--EEEeCCeeEecccccccccCCcchHHH---------------Hhhhcc--------c--cC
Q 017331 113 NGIVMGGGAGVSIHGRF--RVATENSVFAMPETALGLFPDIGASYF---------------LSRLPG--------F--FG 165 (373)
Q Consensus 113 nG~a~GgG~~lala~D~--ria~~~a~f~~pe~~~G~~p~~g~~~~---------------L~rl~g--------l--~G 165 (373)
.|.|.+.|..|++++|- |++.++++|.+....-|..-...-... +++..| . ..
T Consensus 91 ~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd 170 (196)
T PRK12551 91 VGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRD 170 (196)
T ss_pred EEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcC
Confidence 99999999999999985 889999998887764332211111110 111111 1 12
Q ss_pred CCccHHHHHHcCccceecCcC
Q 017331 166 ARLDGAEMRACGLATHFVPSS 186 (373)
Q Consensus 166 ~~i~a~eA~~~GLv~~vv~~~ 186 (373)
..++|+||+++||||+|++..
T Consensus 171 ~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 171 FFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred cCCCHHHHHHcCCCcEEeccC
Confidence 568999999999999999764
No 126
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.96 E-value=8.9e-05 Score=67.57 Aligned_cols=89 Identities=12% Similarity=0.099 Sum_probs=64.0
Q ss_pred HHHHHHhCCCcEEEEEcccccchHhHhhhcCCe--EEEeCCeeEecccccccccCCcchHHH---------------Hhh
Q 017331 97 LNYLMATYTKPQVSILNGIVMGGGAGVSIHGRF--RVATENSVFAMPETALGLFPDIGASYF---------------LSR 159 (373)
Q Consensus 97 l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~--ria~~~a~f~~pe~~~G~~p~~g~~~~---------------L~r 159 (373)
++..|...+-||...+.|.|.+.|..|++++|. |++.++++|.+....-|......-... +++
T Consensus 104 Iyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~ 183 (221)
T PRK14514 104 IYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIAD 183 (221)
T ss_pred HHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788999999999999999999999996 899999999887765443221110110 111
Q ss_pred hcc--------c--cCCCccHHHHHHcCccceecCc
Q 017331 160 LPG--------F--FGARLDGAEMRACGLATHFVPS 185 (373)
Q Consensus 160 l~g--------l--~G~~i~a~eA~~~GLv~~vv~~ 185 (373)
..| . ....++|+||+++||||+|+..
T Consensus 184 ~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 184 HSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred HHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeec
Confidence 112 1 1256899999999999999864
No 127
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.92 E-value=0.00013 Score=65.68 Aligned_cols=128 Identities=21% Similarity=0.301 Sum_probs=88.6
Q ss_pred CCCHHHHHHHHHHHHHHHcCC---CceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcE
Q 017331 32 ALSAQMISRLLELFQRYETDS---NVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQ 108 (373)
Q Consensus 32 al~~~~~~eL~~~l~~~~~d~---~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~ 108 (373)
.++.++...+...|-.++.++ .|.+.| =|.|+|+..- ..++..|...+-||
T Consensus 35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~I-------NSpGG~v~~G-------------------laIyd~m~~~~~~V 88 (201)
T PRK14513 35 PIESQMANTIVAQLLLLDSQNPEQEIQMYI-------NCPGGEVYAG-------------------LAIYDTMRYIKAPV 88 (201)
T ss_pred EEcHHHHHHHHHHHHHhhccCCCCCEEEEE-------ECCCCchhhH-------------------HHHHHHHHhcCCCE
Confidence 378888888888887776533 343333 2556665421 23455667788899
Q ss_pred EEEEcccccchHhHhhhcCCe--EEEeCCeeEecccccccccCCcchHHH-----------------Hhhhcc-------
Q 017331 109 VSILNGIVMGGGAGVSIHGRF--RVATENSVFAMPETALGLFPDIGASYF-----------------LSRLPG------- 162 (373)
Q Consensus 109 IaavnG~a~GgG~~lala~D~--ria~~~a~f~~pe~~~G~~p~~g~~~~-----------------L~rl~g------- 162 (373)
...+.|.|.+.|..|++++|- |++.+++++-+.....|+. +..... +++..|
T Consensus 89 ~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~ 166 (201)
T PRK14513 89 STICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLL 166 (201)
T ss_pred EEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999999995 9999999999877765541 112211 111112
Q ss_pred -c--cCCCccHHHHHHcCccceecCcCc
Q 017331 163 -F--FGARLDGAEMRACGLATHFVPSSR 187 (373)
Q Consensus 163 -l--~G~~i~a~eA~~~GLv~~vv~~~~ 187 (373)
. ...-++|+||+++||||+|+++..
T Consensus 167 ~~~~rd~~msa~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 167 RDMERDYFMSPEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred HHhccCcccCHHHHHHcCCCcEEeccCC
Confidence 1 125689999999999999997644
No 128
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.82 E-value=0.0014 Score=62.19 Aligned_cols=149 Identities=11% Similarity=0.138 Sum_probs=94.7
Q ss_pred eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHH
Q 017331 16 TSFVRILTLNRPR-QLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKE 94 (373)
Q Consensus 16 ~~~v~~i~lnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 94 (373)
+|.-..|.-+.+. ..-++.....+.+.++++.+.. ..+-+|.|..+|++ -+.+ +. ..+... ...
T Consensus 118 ~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~-~~lPlV~l~dSgGa-----RmqE-------g~-~sL~~~-ak~ 182 (285)
T TIGR00515 118 YGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALE-DNCPLIIFSASGGA-----RMQE-------AL-LSLMQM-AKT 182 (285)
T ss_pred CCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHH-cCCCEEEEEcCCCc-----cccc-------ch-hHHHhH-HHH
Confidence 3433334444443 5678999999999999998875 46778888765543 2211 10 011111 122
Q ss_pred HHHHHHHHhCCCcEEEEEcccccchHh-HhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc--ccCCCccHH
Q 017331 95 FILNYLMATYTKPQVSILNGIVMGGGA-GVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG--FFGARLDGA 171 (373)
Q Consensus 95 ~~l~~~i~~~~kP~IaavnG~a~GgG~-~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g--l~G~~i~a~ 171 (373)
.....++.....|.|+++.|+|.||+. ..++.+|++||.++|.+++.-.. .+.+.+| +.-..-+++
T Consensus 183 ~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e~lpe~~q~ae 251 (285)
T TIGR00515 183 SAALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVREKLPEGFQTSE 251 (285)
T ss_pred HHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcCccchhcCCHH
Confidence 223344556789999999999999965 46679999999999987763222 1222222 111122556
Q ss_pred HHHHcCccceecCcCcHHH
Q 017331 172 EMRACGLATHFVPSSRLAL 190 (373)
Q Consensus 172 eA~~~GLv~~vv~~~~l~~ 190 (373)
-+.+.|+||.+|++.++..
T Consensus 252 ~~~~~G~vD~iv~~~~~r~ 270 (285)
T TIGR00515 252 FLLEHGAIDMIVHRPEMKK 270 (285)
T ss_pred HHHhCCCCcEEECcHHHHH
Confidence 6788999999999988744
No 129
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.76 E-value=0.00063 Score=64.73 Aligned_cols=152 Identities=14% Similarity=0.141 Sum_probs=87.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCC----CceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHH
Q 017331 19 VRILTLNRPRQLNALSAQMISRLLELFQRYETDS----NVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKE 94 (373)
Q Consensus 19 v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~----~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 94 (373)
|.++-.+..=..-++.......+.++++.+.++. -+-+|+|.-+| |+-+.+-. ..+..+. ..
T Consensus 70 v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG-----GaRlqEg~--------~~L~~~a-~i 135 (301)
T PRK07189 70 VVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG-----GVRLQEAN--------AGLAAIA-EI 135 (301)
T ss_pred EEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-----CcCccchH--------HHHHHHH-HH
Confidence 3444445444667888888999999999887654 15677776543 33333211 0011111 12
Q ss_pred HHHHHHHHhCCCcEEEEEccc--ccchHhHhhhcCCeEEEeCCeeEecccccccccCC-cchHHHHhhhccccCCCccHH
Q 017331 95 FILNYLMATYTKPQVSILNGI--VMGGGAGVSIHGRFRVATENSVFAMPETALGLFPD-IGASYFLSRLPGFFGARLDGA 171 (373)
Q Consensus 95 ~~l~~~i~~~~kP~IaavnG~--a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~-~g~~~~L~rl~gl~G~~i~a~ 171 (373)
+..+..+... +|+|+.|-|. |+||+..++.+||++|+++++++++.-..+ +-. .|.-.+=++-.++..+.+.+.
T Consensus 136 ~~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaGP~V--Ie~~~G~e~~d~~d~~~vw~~lGG~ 212 (301)
T PRK07189 136 MRAIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSGPEV--IEQEAGVEEFDSRDRALVWRTTGGK 212 (301)
T ss_pred HHHHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccCHHH--HHHhcCCcccCHHHhcccccccCcc
Confidence 2223334444 9999999999 999999999999999999998877521110 000 000000001111111223333
Q ss_pred HHHHcCccceecCcCc
Q 017331 172 EMRACGLATHFVPSSR 187 (373)
Q Consensus 172 eA~~~GLv~~vv~~~~ 187 (373)
.....|++|.+++++.
T Consensus 213 h~~~sG~~D~~v~dd~ 228 (301)
T PRK07189 213 HRYLSGLADALVDDDV 228 (301)
T ss_pred eeeecccceEEeCCHH
Confidence 4556899999998754
No 130
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=97.75 E-value=4.4e-05 Score=65.91 Aligned_cols=39 Identities=18% Similarity=0.117 Sum_probs=31.4
Q ss_pred HhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEec
Q 017331 102 ATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAM 140 (373)
Q Consensus 102 ~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~ 140 (373)
....||+||.++|.|..+|+-|+.+||-+++.+.+.++.
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgs 41 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGS 41 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE-
T ss_pred cccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEE
Confidence 467899999999999999999999999999999887764
No 131
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.72 E-value=0.0018 Score=61.56 Aligned_cols=150 Identities=12% Similarity=0.138 Sum_probs=95.3
Q ss_pred EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHH
Q 017331 15 ETSFVRILTLNRPR-QLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSK 93 (373)
Q Consensus 15 ~~~~v~~i~lnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 93 (373)
.+|.-..|.-|.+. ..-+++....+.+.++++.+... .+-+|.|.-+|+ +-+.+ +. ..+.. ...
T Consensus 118 I~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsgG-----armqE-------gi-~sL~~-~ak 182 (292)
T PRK05654 118 IEGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASGG-----ARMQE-------GL-LSLMQ-MAK 182 (292)
T ss_pred ECCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCC-----cchhh-------hh-hHHHh-HHH
Confidence 34444445555554 66889999999999999988765 577888876543 32222 00 00111 112
Q ss_pred HHHHHHHHHhCCCcEEEEEcccccchHh-HhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc--ccCCCccH
Q 017331 94 EFILNYLMATYTKPQVSILNGIVMGGGA-GVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG--FFGARLDG 170 (373)
Q Consensus 94 ~~~l~~~i~~~~kP~IaavnG~a~GgG~-~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g--l~G~~i~a 170 (373)
......++.....|.|+++.|+|.||+. ..++.+|++||.+++.+++--.+ .+...++ +.-..-++
T Consensus 183 ~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e~lpe~~~~a 251 (292)
T PRK05654 183 TSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVREKLPEGFQRA 251 (292)
T ss_pred HHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhhhhhhhhcCH
Confidence 2233344556689999999999999965 45778999999998877753221 1111111 11011256
Q ss_pred HHHHHcCccceecCcCcHHH
Q 017331 171 AEMRACGLATHFVPSSRLAL 190 (373)
Q Consensus 171 ~eA~~~GLv~~vv~~~~l~~ 190 (373)
+-+.+.|+||.||++.++..
T Consensus 252 e~~~~~G~vD~Vv~~~e~r~ 271 (292)
T PRK05654 252 EFLLEHGAIDMIVHRRELRD 271 (292)
T ss_pred HHHHhCCCCcEEECHHHHHH
Confidence 67788999999999988744
No 132
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.66 E-value=0.0028 Score=60.06 Aligned_cols=146 Identities=16% Similarity=0.166 Sum_probs=89.2
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHH
Q 017331 19 VRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILN 98 (373)
Q Consensus 19 v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (373)
|+++..+-.=..-++....-+.+.++++.+.+. .+-+|+|+.+| |+-+.+ +. ..+..+. .....+
T Consensus 135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~-rlPlV~l~~SG-----GARmQE-------g~-~sL~qma-k~saa~ 199 (296)
T CHL00174 135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNE-SLPLIIVCASG-----GARMQE-------GS-LSLMQMA-KISSAL 199 (296)
T ss_pred EEEEEECCcccccCcCHHHHHHHHHHHHHHHHc-CCCEEEEECCC-----Cccccc-------cc-hhhhhhH-HHHHHH
Confidence 344444444466788999999999999988764 56778887644 333322 00 0011111 111111
Q ss_pred HH-HHhCCCcEEEEEcccccchHhHh-hhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc--ccCCCccHHHHH
Q 017331 99 YL-MATYTKPQVSILNGIVMGGGAGV-SIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG--FFGARLDGAEMR 174 (373)
Q Consensus 99 ~~-i~~~~kP~IaavnG~a~GgG~~l-ala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g--l~G~~i~a~eA~ 174 (373)
.. ...-..|.|+++.|+|.||+... ++.||++|+.+++.+++.-. ..+....| +.-.-=+|+-.+
T Consensus 200 ~~~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGP-----------rVIe~t~ge~lpe~fq~ae~l~ 268 (296)
T CHL00174 200 YDYQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGK-----------RVIEQTLNKTVPEGSQAAEYLF 268 (296)
T ss_pred HHHHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCH-----------HHHHHhcCCcCCcccccHHHHH
Confidence 12 22457999999999999998755 66799999988887664321 11111122 111112577788
Q ss_pred HcCccceecCcCcHHH
Q 017331 175 ACGLATHFVPSSRLAL 190 (373)
Q Consensus 175 ~~GLv~~vv~~~~l~~ 190 (373)
+.|+||.+|+..++..
T Consensus 269 ~~G~vD~iV~r~~lr~ 284 (296)
T CHL00174 269 DKGLFDLIVPRNLLKG 284 (296)
T ss_pred hCcCceEEEcHHHHHH
Confidence 9999999999877643
No 133
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.59 E-value=0.0027 Score=58.68 Aligned_cols=151 Identities=9% Similarity=-0.007 Sum_probs=90.4
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-HcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHH
Q 017331 17 SFVRILTLNRPRQLNALSAQMISRLLELFQRY-ETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEF 95 (373)
Q Consensus 17 ~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~-~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 95 (373)
|....|.=|.|.. .++.+-...+.+.+..+ +.+..+-+|.|.=..+ |-.|..-.... .......+.
T Consensus 31 G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG-~~~g~~aE~~G----------~~~a~A~l~ 97 (238)
T TIGR03134 31 GGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDTPS-QAYGRREELLG----------INQALAHLA 97 (238)
T ss_pred CEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC-CCCCHHHHHHH----------HHHHHHHHH
Confidence 4444455566653 78888888888888885 4457777676654322 22232222111 111122222
Q ss_pred HHHHHHHhCCCcEEEEEcccccchHh-HhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc----c----cCC
Q 017331 96 ILNYLMATYTKPQVSILNGIVMGGGA-GVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG----F----FGA 166 (373)
Q Consensus 96 ~l~~~i~~~~kP~IaavnG~a~GgG~-~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g----l----~G~ 166 (373)
..+......+.|+|+.|-|.++|||+ .+.+.+|.++|-+++. ++..+.-+++..+.+-.. + --.
T Consensus 98 ~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~-------i~vm~~e~aa~I~~~~~~~~~e~a~~~~~~ 170 (238)
T TIGR03134 98 KALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAM-------VHVMDLESMARVTKRSVEELEALAKSSPVF 170 (238)
T ss_pred HHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcE-------EEecCHHHHHHHHccCHhHHHHHHHhhhhh
Confidence 23333445569999999999998876 4444578877776665 455555555554443333 1 112
Q ss_pred CccHHHHHHcCccceecCcCc
Q 017331 167 RLDGAEMRACGLATHFVPSSR 187 (373)
Q Consensus 167 ~i~a~eA~~~GLv~~vv~~~~ 187 (373)
..+.+.+.++|+||.++++.+
T Consensus 171 a~~~~~~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 171 APGIENFVKLGGVHALLDVAD 191 (238)
T ss_pred ccCHHHHHhCCCccEEeCCCC
Confidence 356778999999999998654
No 134
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.42 E-value=0.0011 Score=69.38 Aligned_cols=84 Identities=8% Similarity=0.006 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEEcccc
Q 017331 37 MISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSILNGIV 116 (373)
Q Consensus 37 ~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a 116 (373)
.+.++.++|+.+..|+.|++|||.-.+ +.|+.+..+ +.+++.+..+....|||||..++.+
T Consensus 77 ~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~----------------~ei~~ai~~fk~sgKpVvA~~~~~~ 137 (584)
T TIGR00705 77 SLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHL----------------VEIGSALSEFKDSGKPVYAYGTNYS 137 (584)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHH----------------HHHHHHHHHHHhcCCeEEEEEcccc
Confidence 567999999999999999999998642 124443321 1222333445567899999988876
Q ss_pred cchHhHhhhcCCeEEEeCCeeEec
Q 017331 117 MGGGAGVSIHGRFRVATENSVFAM 140 (373)
Q Consensus 117 ~GgG~~lala~D~ria~~~a~f~~ 140 (373)
-+|+-|+.+||-+++.+.+.+++
T Consensus 138 -s~~YylAs~AD~I~~~p~G~v~~ 160 (584)
T TIGR00705 138 -QGQYYLASFADEIILNPMGSVDL 160 (584)
T ss_pred -chhhhhhhhCCEEEECCCceEEe
Confidence 67899999999999999877754
No 135
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.41 E-value=0.0017 Score=58.01 Aligned_cols=89 Identities=19% Similarity=0.181 Sum_probs=63.1
Q ss_pred HHHHHHhCCCcEEEEEcccccchHhHhhhcCCeE--EEeCCeeEecccccccccCCcchHH--HHhhhc-c---------
Q 017331 97 LNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFR--VATENSVFAMPETALGLFPDIGASY--FLSRLP-G--------- 162 (373)
Q Consensus 97 l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~r--ia~~~a~f~~pe~~~G~~p~~g~~~--~L~rl~-g--------- 162 (373)
++..|...+.||...|-|.|...|..|+++++.. ++.+++++-+.-.. |.+-+. ++- .-++.+ .
T Consensus 77 Iydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~-a~Di~i~A~ei~~~~~~l~~i~ 154 (200)
T COG0740 77 IYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQ-ASDIEIHAREILKIKERLNRIY 154 (200)
T ss_pred HHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677899999999999999999999999985 88888887766555 322211 111 001111 0
Q ss_pred --ccC-------------CCccHHHHHHcCccceecCcCc
Q 017331 163 --FFG-------------ARLDGAEMRACGLATHFVPSSR 187 (373)
Q Consensus 163 --l~G-------------~~i~a~eA~~~GLv~~vv~~~~ 187 (373)
-|| ..++|+||+++||+|+|+....
T Consensus 155 a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 155 AEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred HHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence 233 5689999999999999998654
No 136
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=97.36 E-value=0.0025 Score=58.06 Aligned_cols=133 Identities=17% Similarity=0.207 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHHHHcCC---CceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEE
Q 017331 33 LSAQMISRLLELFQRYETDS---NVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQV 109 (373)
Q Consensus 33 l~~~~~~eL~~~l~~~~~d~---~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I 109 (373)
++.++.+.+...|-.++.++ .|. +-|-+.|+...+|-=+... .....++..|...+-|+.
T Consensus 49 ~~~~~a~~iiaqLl~L~~~~~~k~I~-lyINSpGGsv~~G~~iG~v----------------~~glaIyD~m~~ik~~V~ 111 (222)
T PRK12552 49 VGMDVTELIIAQLLYLEFDDPEKPIY-FYINSTGTSWYTGDAIGFE----------------TEAFAICDTMRYIKPPVH 111 (222)
T ss_pred hhHhHHHHHHHHHHHHhccCCCCCEE-EEEeCCCCCcccccccccc----------------ccHHHHHHHHHhcCCCeE
Confidence 34448888877777775543 333 3334545444344100000 011234455667788899
Q ss_pred EEEcccccchHhHhhhcCCe--EEEeCCeeEecccccccccCCcchHHHHhh---hc-------c-----ccC-------
Q 017331 110 SILNGIVMGGGAGVSIHGRF--RVATENSVFAMPETALGLFPDIGASYFLSR---LP-------G-----FFG------- 165 (373)
Q Consensus 110 aavnG~a~GgG~~lala~D~--ria~~~a~f~~pe~~~G~~p~~g~~~~L~r---l~-------g-----l~G------- 165 (373)
..+-|.|.+.|..|++++|- |++.++++|-+.....|.. |.+.-+.. .+ - .||
T Consensus 112 Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~---G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~ 188 (222)
T PRK12552 112 TICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR---GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLS 188 (222)
T ss_pred EEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999995 8999999998877654432 22211111 00 0 233
Q ss_pred ------CCccHHHHHHcCccceecCc
Q 017331 166 ------ARLDGAEMRACGLATHFVPS 185 (373)
Q Consensus 166 ------~~i~a~eA~~~GLv~~vv~~ 185 (373)
.-++|+||+++||||+|+.+
T Consensus 189 ~d~~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 189 KDTDRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred HHhcCCCcCCHHHHHHcCCCcEEecc
Confidence 45899999999999999975
No 137
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.26 E-value=0.0052 Score=63.16 Aligned_cols=152 Identities=13% Similarity=0.130 Sum_probs=97.8
Q ss_pred CCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHH
Q 017331 17 SFVRILTLNRPR-QLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEF 95 (373)
Q Consensus 17 ~~v~~i~lnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 95 (373)
|.-..|.-|+|. ..-++++...+...++++.+.+ ..+-+|.|.-.++ |..|.+-.. ...+....
T Consensus 314 G~~V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~-~~lPlV~lvDs~G-~~~g~~~E~-------------~g~~~~~a 378 (512)
T TIGR01117 314 GQSVGIIANQPKVMAGCLDIDSSDKIARFIRFCDA-FNIPIVTFVDVPG-FLPGVNQEY-------------GGIIRHGA 378 (512)
T ss_pred CEEEEEEEeccccccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCcC-ccccHHHHH-------------HHHHHHHH
Confidence 333334445554 3456999999999999998876 4677777765444 444433211 12234445
Q ss_pred HHHHHHHhCCCcEEEEEcccccchHhHhhh----cCCeEEEeCCeeEecccccccccCCcchHHHHhhh-c---------
Q 017331 96 ILNYLMATYTKPQVSILNGIVMGGGAGVSI----HGRFRVATENSVFAMPETALGLFPDIGASYFLSRL-P--------- 161 (373)
Q Consensus 96 ~l~~~i~~~~kP~IaavnG~a~GgG~~lal----a~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl-~--------- 161 (373)
+++..+....+|.|+.|-|.|.|||+.-+. .+|+++|.+++.++. .++-++...+.+. +
T Consensus 379 ~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~ 451 (512)
T TIGR01117 379 KVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAAT 451 (512)
T ss_pred HHHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHH
Confidence 667778889999999999999887653332 289988888877654 3333333222211 0
Q ss_pred ------cccCCCccHHHHHHcCccceecCcCcHHH
Q 017331 162 ------GFFGARLDGAEMRACGLATHFVPSSRLAL 190 (373)
Q Consensus 162 ------gl~G~~i~a~eA~~~GLv~~vv~~~~l~~ 190 (373)
.+.-+..++..+.+.|+||.|+++.+...
T Consensus 452 ~~~~~~~~~~~~~~~~~~a~~g~vD~VI~P~~tR~ 486 (512)
T TIGR01117 452 RKQKIAEYREEFANPYKAAARGYVDDVIEPKQTRP 486 (512)
T ss_pred HHHHHHHHHHhhcCHHHHHhcCCCCeeEChHHHHH
Confidence 01123346788999999999999987743
No 138
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.25 E-value=0.0028 Score=65.01 Aligned_cols=136 Identities=15% Similarity=0.188 Sum_probs=89.9
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCcccccc--ChhHHhhhccCCChhhHHHHHHHHHHHHH
Q 017331 22 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGG--DVAAVVRGINEGDWISGAKFFSKEFILNY 99 (373)
Q Consensus 22 i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~--Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (373)
+..+..-...++.......+.++++.+..+ .+-+|.|.- |+|+ .+.+-.. ....+. ....-..
T Consensus 62 ~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~-~~P~v~l~d-----sgGa~~r~~eg~~--------~l~~~g-~i~~~~~ 126 (493)
T PF01039_consen 62 IAQDFTVLGGSVGEVHGEKIARAIELALEN-GLPLVYLVD-----SGGAFLRMQEGVE--------SLMGMG-RIFRAIA 126 (493)
T ss_dssp EEEETTSGGGTBSHHHHHHHHHHHHHHHHH-TEEEEEEEE-----ESSBCGGGGGHHH--------HHHHHH-HHHHHHH
T ss_pred EEeccceecCCCCcccceeeehHHHHHHHc-CCCcEEecc-----ccccccccchhhh--------hhhhhH-HHHHHHH
Confidence 333444466789999999999999988775 456666654 4455 4443221 111222 2233334
Q ss_pred HHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCC-eeEecccccccccCCcchHHHHhhhccccCCCccHHHH-----
Q 017331 100 LMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATEN-SVFAMPETALGLFPDIGASYFLSRLPGFFGARLDGAEM----- 173 (373)
Q Consensus 100 ~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~-a~f~~pe~~~G~~p~~g~~~~L~rl~gl~G~~i~a~eA----- 173 (373)
.+.. ..|+|++|.|+|.|||..++..||++|++++ +.+++. +...+.. .+|+.++.++.
T Consensus 127 ~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~-----------GP~vv~~---~~Ge~~~~~~lgG~~~ 191 (493)
T PF01039_consen 127 RLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA-----------GPRVVES---ATGEEVDSEELGGADV 191 (493)
T ss_dssp HHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS-----------THHHHHH---HHSSCTSHHHHHBHHH
T ss_pred HHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEec-----------ccccccc---ccCccccchhhhhhhh
Confidence 4556 9999999999999999999999999999987 776532 1111222 35677776643
Q ss_pred --HHcCccceecCcCc
Q 017331 174 --RACGLATHFVPSSR 187 (373)
Q Consensus 174 --~~~GLv~~vv~~~~ 187 (373)
...|.+|.++++++
T Consensus 192 h~~~sG~~d~v~~de~ 207 (493)
T PF01039_consen 192 HAAKSGVVDYVVDDEE 207 (493)
T ss_dssp HHHTSSSSSEEESSHH
T ss_pred hcccCCCceEEEechH
Confidence 47899999998753
No 139
>PRK10949 protease 4; Provisional
Probab=97.04 E-value=0.0045 Score=64.98 Aligned_cols=84 Identities=13% Similarity=0.085 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEEcccc
Q 017331 37 MISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSILNGIV 116 (373)
Q Consensus 37 ~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a 116 (373)
.+.++.++|+.+..|+.|++|||.-.+- .|..+..+ +.+++.+..+....||+||.-+..
T Consensus 96 ~l~div~~i~~Aa~D~rIkgivL~i~s~---gG~~~a~~----------------~eI~~ai~~fk~sGKpVvA~~~~~- 155 (618)
T PRK10949 96 SLFDIVNTIRQAKDDRNITGIVLDLKNF---AGADQPSM----------------QYIGKALREFRDSGKPVYAVGDSY- 155 (618)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEeCCC---CCccHHHH----------------HHHHHHHHHHHHhCCeEEEEecCc-
Confidence 4568999999999999999999986431 12222111 122333445556789999864444
Q ss_pred cchHhHhhhcCCeEEEeCCeeEec
Q 017331 117 MGGGAGVSIHGRFRVATENSVFAM 140 (373)
Q Consensus 117 ~GgG~~lala~D~ria~~~a~f~~ 140 (373)
.-+|+-||.+||-+++.+.+.+++
T Consensus 156 ~s~~YyLASaAD~I~l~P~G~v~~ 179 (618)
T PRK10949 156 SQGQYYLASFANKIYLSPQGVVDL 179 (618)
T ss_pred cchhhhhhhhCCEEEECCCceEEE
Confidence 467899999999999998877653
No 140
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.95 E-value=0.016 Score=60.13 Aligned_cols=139 Identities=16% Similarity=0.214 Sum_probs=85.8
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHH
Q 017331 22 LTLNRPR-QLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYL 100 (373)
Q Consensus 22 i~lnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (373)
|.-|.+. +.-+++....+.+.++++.+.+. .+-+|.|.-+|+++-.+ ....+. ....+ .........
T Consensus 133 v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~-~lPlV~l~DSgGarl~~-q~e~~~---------~~~~~-g~if~~~~~ 200 (569)
T PLN02820 133 FVANDPTVKGGTYYPITVKKHLRAQEIAAQC-RLPCIYLVDSGGANLPR-QAEVFP---------DRDHF-GRIFYNQAR 200 (569)
T ss_pred EEEECCCccCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCCcc-cccccc---------hHhHH-HHHHHHHHH
Confidence 3334443 66889999999999999988764 56777776544433211 001000 00011 111222233
Q ss_pred HHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCC-eeEecccccccccCCcchHHHHhhhcc-ccCCCccHHHH-----
Q 017331 101 MATYTKPQVSILNGIVMGGGAGVSIHGRFRVATEN-SVFAMPETALGLFPDIGASYFLSRLPG-FFGARLDGAEM----- 173 (373)
Q Consensus 101 i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~-a~f~~pe~~~G~~p~~g~~~~L~rl~g-l~G~~i~a~eA----- 173 (373)
+....+|.|++|-|.|.|||......||++|+++. +.+++ + + |+++- .+|+.+++++.
T Consensus 201 ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~----------a-G----P~vV~~~~Ge~v~~eeLGGa~~ 265 (569)
T PLN02820 201 MSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL----------A-G----PPLVKAATGEEVSAEDLGGADV 265 (569)
T ss_pred HhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe----------c-C----HHHHHhhcCcccCHHHhCCHHH
Confidence 45567999999999999999999999999999874 54443 1 1 11121 35666665554
Q ss_pred H--HcCccceecCcCc
Q 017331 174 R--ACGLATHFVPSSR 187 (373)
Q Consensus 174 ~--~~GLv~~vv~~~~ 187 (373)
+ .-|.++.+++++.
T Consensus 266 h~~~sGv~d~~~~de~ 281 (569)
T PLN02820 266 HCKVSGVSDHFAQDEL 281 (569)
T ss_pred hcccccccccccCchH
Confidence 3 3789988888753
No 141
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.015 Score=57.64 Aligned_cols=141 Identities=9% Similarity=0.100 Sum_probs=96.8
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHH
Q 017331 16 TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEF 95 (373)
Q Consensus 16 ~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 95 (373)
+..|..|.++. .+++.+.+.+.+.++.++++.. -+|||. ++ +++ .+.....
T Consensus 25 ~~~v~vi~i~g-----~I~~~s~~~l~r~l~~A~~~~a-~~vvl~-----------ld------TPG------Gl~~sm~ 75 (436)
T COG1030 25 EKKVYVIEIDG-----AIDPASADYLQRALQSAEEENA-AAVVLE-----------LD------TPG------GLLDSMR 75 (436)
T ss_pred CCeEEEEEecC-----ccCHHHHHHHHHHHHHHHhCCC-cEEEEE-----------ec------CCC------chHHHHH
Confidence 45677777764 4999999999999999987653 344442 11 011 1123455
Q ss_pred HHHHHHHhCCCcEEEEEc---ccccchHhHhhhcCCeEEEeCCeeEeccccc-ccc--cCCcc-hHHHHhhhcc------
Q 017331 96 ILNYLMATYTKPQVSILN---GIVMGGGAGVSIHGRFRVATENSVFAMPETA-LGL--FPDIG-ASYFLSRLPG------ 162 (373)
Q Consensus 96 ~l~~~i~~~~kP~Iaavn---G~a~GgG~~lala~D~ria~~~a~f~~pe~~-~G~--~p~~g-~~~~L~rl~g------ 162 (373)
++...|.+.+.|+|..|. +.|..+|.-++++||+..|++.+.+|--..- .|- .+... ..+.+..+.+
T Consensus 76 ~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~g 155 (436)
T COG1030 76 QIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERG 155 (436)
T ss_pred HHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcC
Confidence 678889999999999884 4699999999999999999999988864432 331 11111 2233333322
Q ss_pred ----------ccCCCccHHHHHHcCccceecCc
Q 017331 163 ----------FFGARLDGAEMRACGLATHFVPS 185 (373)
Q Consensus 163 ----------l~G~~i~a~eA~~~GLv~~vv~~ 185 (373)
.-...++++||.+.|++|-+..+
T Consensus 156 RN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~ 188 (436)
T COG1030 156 RNPTWAERFVTENLSLTAEEALRQGVIDLIARD 188 (436)
T ss_pred CChHHHHHHhhhccCCChhHHHhcCccccccCC
Confidence 12367999999999999987764
No 142
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.72 E-value=0.025 Score=58.23 Aligned_cols=128 Identities=13% Similarity=0.198 Sum_probs=78.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcE
Q 017331 29 QLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQ 108 (373)
Q Consensus 29 ~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~ 108 (373)
+.-++.....+.+.++++.+.++. +-+|.|.-+| |+.+.+-.. ....+.+.+... .. ..-..|.
T Consensus 94 ~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSg-----Garm~eg~~--------~l~~~~~~~~~~-~~-~s~~iP~ 157 (512)
T TIGR01117 94 MGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSG-----GARIQEAVD--------ALKGYGDIFYRN-TI-ASGVVPQ 157 (512)
T ss_pred cccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCC-----CCCccccch--------hhhhHHHHHHHH-HH-HcCCCcE
Confidence 567888889999999998887654 5667666533 333322000 001111111111 11 2335899
Q ss_pred EEEEcccccchHhHhhhcCCeEEEeCCe-eEecccccccccCCcchHHHHhhhccccCCCccHHHH-----H--HcCccc
Q 017331 109 VSILNGIVMGGGAGVSIHGRFRVATENS-VFAMPETALGLFPDIGASYFLSRLPGFFGARLDGAEM-----R--ACGLAT 180 (373)
Q Consensus 109 IaavnG~a~GgG~~lala~D~ria~~~a-~f~~pe~~~G~~p~~g~~~~L~rl~gl~G~~i~a~eA-----~--~~GLv~ 180 (373)
|++|.|+|.||+......||++|+++++ .+++ ++...+.. .+|+.+++++. + .-|++|
T Consensus 158 Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~-----------aGP~vv~~---~~Ge~v~~e~lGGa~~h~~~sGv~d 223 (512)
T TIGR01117 158 ISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFI-----------TGPQVIKT---VTGEEVTAEQLGGAMAHNSVSGVAH 223 (512)
T ss_pred EEEEecCCCcHHHHHHHhcCceEEeccceEEEe-----------cChHHHHh---hcCcccchhhcchHHHhccccceeE
Confidence 9999999999998888899999999964 4443 11111222 35555555444 3 589999
Q ss_pred eecCcC
Q 017331 181 HFVPSS 186 (373)
Q Consensus 181 ~vv~~~ 186 (373)
.+++++
T Consensus 224 ~~~~de 229 (512)
T TIGR01117 224 FIAEDD 229 (512)
T ss_pred EecCCh
Confidence 998864
No 143
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=96.17 E-value=0.15 Score=47.40 Aligned_cols=145 Identities=13% Similarity=0.184 Sum_probs=95.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHH
Q 017331 19 VRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILN 98 (373)
Q Consensus 19 v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (373)
++...++-.=-.-+|..-.=..+.++++.+-.+ .+.+|+++.+| |+-+.|-.- .+.. .......+
T Consensus 124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSG-----GARMQEg~l--------SLMQ-MaktsaAl 188 (294)
T COG0777 124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASG-----GARMQEGIL--------SLMQ-MAKTSAAL 188 (294)
T ss_pred EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCc-----chhHhHHHH--------HHHH-HHHHHHHH
Confidence 444555554445677777788888999887764 58899998765 333333100 0011 12233445
Q ss_pred HHHHhCCCcEEEEEcccccch-HhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc--ccCCCccHHHHHH
Q 017331 99 YLMATYTKPQVSILNGIVMGG-GAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG--FFGARLDGAEMRA 175 (373)
Q Consensus 99 ~~i~~~~kP~IaavnG~a~Gg-G~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g--l~G~~i~a~eA~~ 175 (373)
.++.....|.|+.+..+..|| -..+++..|+.||-++|.+|+.--++ +-+.++ +--.--+++-.++
T Consensus 189 ~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRV-----------IEQTire~LPegfQ~aEfLle 257 (294)
T COG0777 189 KRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRV-----------IEQTIREKLPEGFQTAEFLLE 257 (294)
T ss_pred HHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchh-----------hhhhhcccCCcchhhHHHHHH
Confidence 666778999999999999988 46899999999999898877543221 111111 1111236788999
Q ss_pred cCccceecCcCcHH
Q 017331 176 CGLATHFVPSSRLA 189 (373)
Q Consensus 176 ~GLv~~vv~~~~l~ 189 (373)
.|+||.||+..++.
T Consensus 258 hG~iD~iv~R~elr 271 (294)
T COG0777 258 HGMIDMIVHRDELR 271 (294)
T ss_pred cCCceeeecHHHHH
Confidence 99999999987663
No 144
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=96.13 E-value=0.0044 Score=57.86 Aligned_cols=84 Identities=20% Similarity=0.213 Sum_probs=62.3
Q ss_pred HHHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhhhcc-----ccCCCcc
Q 017331 95 FILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-----FFGARLD 169 (373)
Q Consensus 95 ~~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g-----l~G~~i~ 169 (373)
.+-...+..+++|+||.|=|---+||.-=...+|.+.+-++++++. +.| -|.+..|.+=.. .....|+
T Consensus 178 A~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isP-EG~AsILWkD~~ka~eAAe~mkit 250 (317)
T COG0825 178 ARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISP-EGCASILWKDASKAKEAAEAMKIT 250 (317)
T ss_pred HHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cCh-hhhhhhhhcChhhhHHHHHHcCCC
Confidence 3444567889999999999987777765556789999999999873 334 444444443322 2346799
Q ss_pred HHHHHHcCccceecCc
Q 017331 170 GAEMRACGLATHFVPS 185 (373)
Q Consensus 170 a~eA~~~GLv~~vv~~ 185 (373)
|++++++||||.|+|.
T Consensus 251 a~dLk~lgiID~II~E 266 (317)
T COG0825 251 AHDLKELGIIDGIIPE 266 (317)
T ss_pred HHHHHhCCCcceeccC
Confidence 9999999999999985
No 145
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=95.31 E-value=0.23 Score=50.80 Aligned_cols=201 Identities=15% Similarity=0.159 Sum_probs=108.1
Q ss_pred EEEEEc-CCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHH
Q 017331 20 RILTLN-RPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILN 98 (373)
Q Consensus 20 ~~i~ln-rp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (373)
..+..| -+-+.-++..-....+.++.+.+..+.. -+|.|.- |+|+.+.+=... ...+ -..+.-.
T Consensus 93 ~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~-P~i~l~d-----sgGari~~~v~~--------l~g~-g~iF~~~ 157 (526)
T COG4799 93 VFVFANDFTVKGGTLGEMTAKKILRAQELAIENGL-PVIGLND-----SGGARIQEGVPS--------LAGY-GRIFYRN 157 (526)
T ss_pred EEEEEecCceecccccccccchHHHHHHHHHHcCC-CEEEEEc-----ccccccccCccc--------cccc-hHHHHHH
Confidence 333333 4446778887778888888888776544 4444432 334444431110 1111 2222233
Q ss_pred HHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCe-eEecccccccccCCcchHHHHhhhccccCCCccHHH-----
Q 017331 99 YLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENS-VFAMPETALGLFPDIGASYFLSRLPGFFGARLDGAE----- 172 (373)
Q Consensus 99 ~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a-~f~~pe~~~G~~p~~g~~~~L~rl~gl~G~~i~a~e----- 172 (373)
.+++.. +|.|++|-|.|.|||.-+...||++|+.++. ++.+.- |+ +-+. .||+.++++|
T Consensus 158 a~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~~~mfltG------P~------~ik~--vtGe~V~~e~LGGa~ 222 (526)
T COG4799 158 ARASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQSYMFLTG------PP------VIKA--VTGEEVSAEELGGAQ 222 (526)
T ss_pred HHhccC-CCEEEEEEecCcccccccccccceEEEEcCCccEEeeC------HH------HHHh--hcCcEeehhhccchh
Confidence 445555 9999999999999999999999999999884 322110 11 1111 3666665553
Q ss_pred --HHHcCccceecCcCc-HHHHHHHH-HhccCCCHHHHH---------HHHHHhccCCCCCCcchhhHHHHHHHhcCcCC
Q 017331 173 --MRACGLATHFVPSSR-LALLEEAL-YKVNSSDPAVIS---------AVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRT 239 (373)
Q Consensus 173 --A~~~GLv~~vv~~~~-l~~~~~al-~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 239 (373)
+...|.++.+.+++. .....+.+ ..++..+..... .--+.+..-.+.+.+...+-...|.+.|...+
T Consensus 223 vh~~~sGva~~~a~dd~~Ai~~vr~~lsylp~~~~~~~p~~~~~~~~~~~~~~l~~ivP~d~~~pYDvrevI~rl~D~~~ 302 (526)
T COG4799 223 VHARKSGVADLLAEDDEDAIELVRRLLSYLPSNNREPPPVVPTPDEPDRDDEELDSIVPDDPRKPYDVREVIARLVDDGE 302 (526)
T ss_pred hhcccccceeeeecCHHHHHHHHHHHHHhcCccCCCCCCcCCCCCCcccChhhhcccCCCCCCccccHHHHHHHhcCCcc
Confidence 233488888887642 11122222 222211100000 00000000111122223466789999999889
Q ss_pred HHHHHHHHHhc
Q 017331 240 VEEILSALESE 250 (373)
Q Consensus 240 ~~ei~~~L~~~ 250 (373)
+.|+....-.+
T Consensus 303 F~E~~~~~a~~ 313 (526)
T COG4799 303 FLEFKAGYAKN 313 (526)
T ss_pred HHHHHhhhCcc
Confidence 99987666443
No 146
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=94.90 E-value=0.27 Score=50.56 Aligned_cols=152 Identities=17% Similarity=0.167 Sum_probs=92.7
Q ss_pred CCEEEEEEcCCCCCC-CCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHH
Q 017331 17 SFVRILTLNRPRQLN-ALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEF 95 (373)
Q Consensus 17 ~~v~~i~lnrp~~~N-al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 95 (373)
|...-|.-|+|.... +++.+-.....+.++.++. ..+-+|.|.-. ..|..|-.-. .....+...
T Consensus 293 G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-pGf~~g~~~E-------------~~g~~~~ga 357 (493)
T PF01039_consen 293 GRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-PGFMPGPEAE-------------RAGIIRAGA 357 (493)
T ss_dssp TEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-CEB--SHHHH-------------HTTHHHHHH
T ss_pred CcceEEEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-ccccccchhh-------------hcchHHHHH
Confidence 333345557765322 6999999999999999987 56778877643 2233333221 123345566
Q ss_pred HHHHHHHhCCCcEEEEEcccccchHhHhhhcC----CeEEEeCCeeEecccccccccCCcchHHHHhhhcc---------
Q 017331 96 ILNYLMATYTKPQVSILNGIVMGGGAGVSIHG----RFRVATENSVFAMPETALGLFPDIGASYFLSRLPG--------- 162 (373)
Q Consensus 96 ~l~~~i~~~~kP~IaavnG~a~GgG~~lala~----D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl~g--------- 162 (373)
+++..+..+..|+|..|-|.+.|||....... |+++|.++++++ +.++.|+...+.+.--
T Consensus 358 ~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~-------vm~~e~a~~i~~~~~~~~~~~~~~~ 430 (493)
T PF01039_consen 358 RLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG-------VMGPEGAASILYRDELEAAEAEGAD 430 (493)
T ss_dssp HHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE-------SS-HHHHHHHHTHHHHHHSCHCCHS
T ss_pred HHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee-------ecChhhhheeeehhhhhhhhcccch
Confidence 78888999999999999999999877444444 677666666654 5444444433322211
Q ss_pred -----------ccCCCccHHHHHHcCccceecCcCcHHH
Q 017331 163 -----------FFGARLDGAEMRACGLATHFVPSSRLAL 190 (373)
Q Consensus 163 -----------l~G~~i~a~eA~~~GLv~~vv~~~~l~~ 190 (373)
..-...++..+...|++|.++++.+...
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~ 469 (493)
T PF01039_consen 431 PEAQRAEKIAEYEDELSSPYRAASRGYVDDIIDPAETRK 469 (493)
T ss_dssp HHHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHH
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHH
Confidence 1112257788899999999999988743
No 147
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=93.88 E-value=0.095 Score=52.28 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=53.3
Q ss_pred HHHHHHHhcCcchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhhCCCCCcHHhhHhhh---hccCCCCCCCCCCCc
Q 017331 261 DAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAI---LLDKDKNPKWKPSKL 334 (373)
Q Consensus 261 ~~a~~i~~~sp~a~~~~k~~l~~~~~~~~~e~l~~e~~~~~~~~~~~~s~d~~egi~a~---l~eK~r~P~w~~~~~ 334 (373)
+.+++++..+|.++..+|+.++... .+....+..+...+..++.+ +|+.|++.+| + +| |.|.|..+.+
T Consensus 228 ~~~~~i~~~~p~av~~~k~~~~~~~-~~~~~~l~~~~~~i~~~f~~---~d~~ei~~al~~~~-~k-r~~~wa~~~~ 298 (401)
T PLN02157 228 EQLKKLLTDDPSVVESCLEKCAEVA-HPEKTGVIRRIDLLEKCFSH---DTVEEIIDSLEIEA-GR-RKDTWCITTL 298 (401)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHhcC---CCHHHHHHHHHhhh-cc-cchHHHHHHH
Confidence 4477888889999999999997653 34567777788888889965 4999999998 4 66 6788975543
No 148
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=0.31 Score=44.99 Aligned_cols=125 Identities=15% Similarity=0.227 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 017331 33 LSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSIL 112 (373)
Q Consensus 33 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav 112 (373)
++.++-+.+...|-.++.++.-|=+.+.= -|.|+.+.. ...++..+..+.-||=..+
T Consensus 101 Idd~va~~viaqlL~Ld~ed~~K~I~lyI----NSPGG~vta-------------------glAIYDtMq~ik~~V~Tic 157 (275)
T KOG0840|consen 101 IDDDVANLVIAQLLYLDSEDPKKPIYLYI----NSPGGSVTA-------------------GLAIYDTMQYIKPDVSTIC 157 (275)
T ss_pred CcHHHHHHHHHHHHHhhccCCCCCeEEEE----eCCCCccch-------------------hhhHHHHHHhhCCCceeee
Confidence 67777777777766666554445444421 244555521 1123344555666666666
Q ss_pred cccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHH-----H-------------Hhhhc-cccC--------
Q 017331 113 NGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASY-----F-------------LSRLP-GFFG-------- 165 (373)
Q Consensus 113 nG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~-----~-------------L~rl~-gl~G-------- 165 (373)
=|.|.+-|.-|..+. +.+-++++|..++=+.-+.|+.. . |-++. ..||
T Consensus 158 ~G~Aas~aalLLaaG-----~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~ 232 (275)
T KOG0840|consen 158 VGLAASMAALLLAAG-----AKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEK 232 (275)
T ss_pred hhhHHhHHHHHHhcC-----CCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHh
Confidence 688877666555443 56667777777766542222211 0 00000 0355
Q ss_pred -----CCccHHHHHHcCccceecCc
Q 017331 166 -----ARLDGAEMRACGLATHFVPS 185 (373)
Q Consensus 166 -----~~i~a~eA~~~GLv~~vv~~ 185 (373)
+-++|+||+++||+|.|+++
T Consensus 233 d~dRd~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 233 DMDRDRFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred hhcccccCCHHHHHHhcchhhhhcC
Confidence 55899999999999999874
No 149
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=93.38 E-value=1.5 Score=45.79 Aligned_cols=136 Identities=15% Similarity=0.150 Sum_probs=89.9
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEE
Q 017331 31 NALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVS 110 (373)
Q Consensus 31 Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia 110 (373)
-+++.+-.....+.++.++. -.+-+|.|.-..+ |..|.+-.. ....+...+++..+....+|.|+
T Consensus 380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~pG-f~~G~~~E~-------------~G~~~~~a~l~~A~a~~~VP~is 444 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNITG-FMVGSRSEA-------------SGIAKAGAKMVMAVACAKVPKIT 444 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECCC-CCCCHHHHH-------------hhHHHHHHHHHHHHHhCCCCEEE
Confidence 35888899999999988875 5677777754322 555544332 22345667788888899999999
Q ss_pred EEcccccchHhHhhh----cCCeEEEeCCeeEecccccccccCCcchHHHHhhh-c------c-----------------
Q 017331 111 ILNGIVMGGGAGVSI----HGRFRVATENSVFAMPETALGLFPDIGASYFLSRL-P------G----------------- 162 (373)
Q Consensus 111 avnG~a~GgG~~lal----a~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~rl-~------g----------------- 162 (373)
+|-|.|+|+|..-.. ..|++++.+++ .+|..++-|+...+.+. + |
T Consensus 445 vi~g~a~G~g~~aM~g~~~~~d~~~awp~A-------~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (569)
T PLN02820 445 IIVGGSFGAGNYGMCGRAYSPNFLFMWPNA-------RIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVE 517 (569)
T ss_pred EEECCcchHHHHHhcCcCCCCCEEEECCCC-------eEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHH
Confidence 999999998764443 45666666555 45666666665555431 1 1
Q ss_pred ccCCCccHHHHHHcCccceecCcCcH
Q 017331 163 FFGARLDGAEMRACGLATHFVPSSRL 188 (373)
Q Consensus 163 l~G~~i~a~eA~~~GLv~~vv~~~~l 188 (373)
..-+..++..|...|++|.|+++.+.
T Consensus 518 ~~~~~~~p~~aa~~~~vD~VIdP~dT 543 (569)
T PLN02820 518 AYEREANPYYSTARLWDDGVIDPADT 543 (569)
T ss_pred HHHHhCCHHHHHHcCCcCcccCHHHH
Confidence 01122345557788999999988765
No 150
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=89.42 E-value=3.1 Score=42.70 Aligned_cols=149 Identities=17% Similarity=0.205 Sum_probs=96.8
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHH
Q 017331 22 LTLNRPR-QLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYL 100 (373)
Q Consensus 22 i~lnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (373)
|.=|.|. ..-+|+.+--..-.+.++.++. .++-.|.|.-. ..|..|-+-.. ....+...+++.+
T Consensus 328 iIANqp~~~~G~l~~~sa~KaArFI~~cd~-~~iPlv~L~d~-pGFm~G~~~E~-------------~giik~Gakl~~A 392 (526)
T COG4799 328 IIANQPRHLGGVLDIDSADKAARFIRLCDA-FNIPLVFLVDT-PGFMPGTDQEY-------------GGIIKHGAKLLYA 392 (526)
T ss_pred EEecCccccccccchHHHHHHHHHHHhhhc-cCCCeEEEeCC-CCCCCChhHHh-------------ChHHHhhhHHHhh
Confidence 5556665 4558899999988898866554 56777777432 55888876542 2345566678899
Q ss_pred HHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCeeEecccccccccCCcchHHHHhh-hcc-----------------
Q 017331 101 MATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSR-LPG----------------- 162 (373)
Q Consensus 101 i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r-l~g----------------- 162 (373)
+..+.+|.|..|-|.++|||...+..-.+- .+-.|+.|..++|..-+-|+...+.| .+.
T Consensus 393 ~aeatVPkitvI~rkayGga~~~M~~~~~~---~~~~~AwP~a~iaVMG~egAv~i~~~k~l~~~~~~~~~~~~~~~~~~ 469 (526)
T COG4799 393 VAEATVPKITVITRKAYGGAYYVMGGKALG---PDFNYAWPTAEIAVMGPEGAVSILYRKELAAAERPEEREALLRKQLI 469 (526)
T ss_pred HhhccCCeEEEEecccccceeeeecCccCC---CceeEecCcceeeecCHHHHHHHHHHHHhhcccCchhHHHHHHHHHH
Confidence 999999999999999999986443322221 34445555566666544555544443 222
Q ss_pred --ccCCCccHHHHHHcCccceecCcCcH
Q 017331 163 --FFGARLDGAEMRACGLATHFVPSSRL 188 (373)
Q Consensus 163 --l~G~~i~a~eA~~~GLv~~vv~~~~l 188 (373)
+.-+-..+.-|.+.|++|.|+++.+.
T Consensus 470 ~eY~~~~~~p~~aa~r~~iD~vI~p~~t 497 (526)
T COG4799 470 AEYEEQFSNPYYAAERGYIDAVIDPADT 497 (526)
T ss_pred HHHHHhccchHHHHHhCCCCcccCHHHH
Confidence 00112455667788999999988654
No 151
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=72.55 E-value=8.9 Score=36.91 Aligned_cols=78 Identities=13% Similarity=0.221 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHcCC---CceEEEE-ecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEE
Q 017331 36 QMISRLLELFQRYETDS---NVKLLIL-KGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSI 111 (373)
Q Consensus 36 ~~~~eL~~~l~~~~~d~---~v~~vVl-tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaa 111 (373)
....++..+|+.+.... .+-+||| +| |+.+.++... .-..+.++|..++.|||++
T Consensus 55 ~A~~~I~~al~~~~~~~~~~~~Dviii~RG-------GGs~eDL~~F--------------N~e~varai~~~~~Pvisa 113 (319)
T PF02601_consen 55 GAAASIVSALRKANEMGQADDFDVIIIIRG-------GGSIEDLWAF--------------NDEEVARAIAASPIPVISA 113 (319)
T ss_pred chHHHHHHHHHHHHhccccccccEEEEecC-------CCChHHhccc--------------ChHHHHHHHHhCCCCEEEe
Confidence 35667777777776543 4555555 34 4444444321 1235778899999999998
Q ss_pred EcccccchHhHhhhcCCeEEEeCCe
Q 017331 112 LNGIVMGGGAGVSIHGRFRVATENS 136 (373)
Q Consensus 112 vnG~a~GgG~~lala~D~ria~~~a 136 (373)
| ||-.-- .-.=+.||+|..|+++
T Consensus 114 I-GHe~D~-ti~D~vAd~ra~TPta 136 (319)
T PF02601_consen 114 I-GHETDF-TIADFVADLRAPTPTA 136 (319)
T ss_pred c-CCCCCc-hHHHHHHHhhCCCHHH
Confidence 7 444322 2344567788777765
No 152
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=71.52 E-value=33 Score=34.57 Aligned_cols=106 Identities=20% Similarity=0.236 Sum_probs=74.0
Q ss_pred EEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHH
Q 017331 20 RILTLNRPR-QLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILN 98 (373)
Q Consensus 20 ~~i~lnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (373)
.-|.-|+|+ ..-.|..+.-....+.++-+.+ ..+-.|.|...++ |-.|.+..... ..+.-..+.
T Consensus 351 VgIvgnn~kf~~G~L~s~sa~KgarfIe~c~q-~~IPLi~l~ni~G-fm~g~~~e~~g-------------IaK~gAklv 415 (536)
T KOG0540|consen 351 VGIVGNNPKFAGGVLFSESAVKGARFIELCDQ-RNIPLIFLQNITG-FMVGRAAEAGG-------------IAKHGAKLV 415 (536)
T ss_pred EEEeccCchhcccccchhhhhhhHHHHHHHHh-cCCcEEEEEccCC-ccccchhhhhc-------------hhhhhhhhh
Confidence 336667776 3456777777777777776654 5777777776666 88888876421 122334566
Q ss_pred HHHHhCCCcEEEEEcccccchHhH---hhhcCCeEEEeCCeeEec
Q 017331 99 YLMATYTKPQVSILNGIVMGGGAG---VSIHGRFRVATENSVFAM 140 (373)
Q Consensus 99 ~~i~~~~kP~IaavnG~a~GgG~~---lala~D~ria~~~a~f~~ 140 (373)
.+.....+|-|..+.|.+.||-.. -++.-|+.++-++|++++
T Consensus 416 ~a~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~Iav 460 (536)
T KOG0540|consen 416 YAVACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAV 460 (536)
T ss_pred hhhhhccCceEEEEecCccCCcccccccccCCceeEEcccceeee
Confidence 777788899999999999997544 566778888877777653
No 153
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=65.96 E-value=16 Score=36.87 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHcCCCceEEEEe-cCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEEcc
Q 017331 36 QMISRLLELFQRYETDSNVKLLILK-GKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSILNG 114 (373)
Q Consensus 36 ~~~~eL~~~l~~~~~d~~v~~vVlt-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG 114 (373)
....++.++|+.+...+++-+|||. | |+-+.++... +...+.++|..+|.|||++| |
T Consensus 170 ~a~~~i~~al~~~~~~~~~dviii~RG-------GGs~eDL~~F--------------n~e~~~rai~~~~~Pvis~i-G 227 (432)
T TIGR00237 170 GAVQSIVESIELANTKNECDVLIVGRG-------GGSLEDLWSF--------------NDEKVARAIFLSKIPIISAV-G 227 (432)
T ss_pred cHHHHHHHHHHHhhcCCCCCEEEEecC-------CCCHHHhhhc--------------CcHHHHHHHHcCCCCEEEec-C
Confidence 4566777777777655555556553 3 3334443321 12356788999999999987 3
Q ss_pred cccchHhHhhhcCCeEEEeCCe
Q 017331 115 IVMGGGAGVSIHGRFRVATENS 136 (373)
Q Consensus 115 ~a~GgG~~lala~D~ria~~~a 136 (373)
|-.-- .-.=+.+|.|..|+++
T Consensus 228 He~D~-ti~D~vAd~ra~TPta 248 (432)
T TIGR00237 228 HETDF-TISDFVADLRAPTPSA 248 (432)
T ss_pred cCCCc-cHHHHhhhccCCCcHH
Confidence 33221 2234577888887754
No 154
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=64.01 E-value=14 Score=37.25 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=24.8
Q ss_pred HHHHHHHhCCCcEEEEEcccccchHhHhhhcCCeEEEeCCe
Q 017331 96 ILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENS 136 (373)
Q Consensus 96 ~l~~~i~~~~kP~IaavnG~a~GgG~~lala~D~ria~~~a 136 (373)
.+.++|+.+++|+|++| ||-.-- .-.=+.+|+|-.|+++
T Consensus 216 ~vaRAi~~s~iPvISAV-GHEtD~-tL~DfVAD~RApTPTa 254 (440)
T COG1570 216 IVARAIAASRIPVISAV-GHETDF-TLADFVADLRAPTPTA 254 (440)
T ss_pred HHHHHHHhCCCCeEeec-ccCCCc-cHHHhhhhccCCCchH
Confidence 57789999999999988 333221 1122456666666543
No 155
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=59.06 E-value=21 Score=36.01 Aligned_cols=77 Identities=16% Similarity=0.223 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHcCCCceEEEE-ecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEEcc
Q 017331 36 QMISRLLELFQRYETDSNVKLLIL-KGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSILNG 114 (373)
Q Consensus 36 ~~~~eL~~~l~~~~~d~~v~~vVl-tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG 114 (373)
....++..+|+.+.... +-+||| +| |+-+.++... +-..+.++|..++.|||++| |
T Consensus 176 ~A~~~i~~al~~~~~~~-~Dviii~RG-------GGS~eDL~~F--------------n~e~v~~ai~~~~~Pvis~I-G 232 (438)
T PRK00286 176 GAAASIVAAIERANARG-EDVLIVARG-------GGSLEDLWAF--------------NDEAVARAIAASRIPVISAV-G 232 (438)
T ss_pred cHHHHHHHHHHHhcCCC-CCEEEEecC-------CCCHHHhhcc--------------CcHHHHHHHHcCCCCEEEec-c
Confidence 34566777777665432 344444 34 3334443321 12357788999999999977 3
Q ss_pred cccchHhHhhhcCCeEEEeCCe
Q 017331 115 IVMGGGAGVSIHGRFRVATENS 136 (373)
Q Consensus 115 ~a~GgG~~lala~D~ria~~~a 136 (373)
|-.-- .-.=+.||.|.+|+++
T Consensus 233 HE~D~-tl~D~vAd~ra~TPta 253 (438)
T PRK00286 233 HETDF-TIADFVADLRAPTPTA 253 (438)
T ss_pred CCCCc-cHHHHhhhccCCChHH
Confidence 33221 2344577888887765
No 156
>smart00250 PLEC Plectin repeat.
Probab=49.82 E-value=13 Score=23.65 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=17.3
Q ss_pred ccCCCccHHHHHHcCccce
Q 017331 163 FFGARLDGAEMRACGLATH 181 (373)
Q Consensus 163 l~G~~i~a~eA~~~GLv~~ 181 (373)
.+|++++-.||.+.||++.
T Consensus 17 ~t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 17 ETGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCCcCHHHHHHcCCCCc
Confidence 4899999999999999984
No 157
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=49.45 E-value=51 Score=31.30 Aligned_cols=51 Identities=20% Similarity=0.431 Sum_probs=32.9
Q ss_pred HHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEEccccc
Q 017331 43 ELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSILNGIVM 117 (373)
Q Consensus 43 ~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a~ 117 (373)
++|+.+++||+.++||+-|.- |++-.+ ...++. .. ....||+||.+-|.+.
T Consensus 190 d~L~~fe~Dp~T~~ivmiGEi-----GG~aEe-----------~AA~~i-------~~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 190 DALEMFEADPETEAIVMIGEI-----GGPAEE-----------EAAEYI-------KA-NATRKPVVAYIAGRTA 240 (293)
T ss_pred HHHHHHhcCccccEEEEEecC-----CCcHHH-----------HHHHHH-------HH-hccCCCEEEEEeccCC
Confidence 678888899999999988751 222222 112222 22 2345999999999875
No 158
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=47.90 E-value=45 Score=30.33 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=37.4
Q ss_pred ccCCcchHHHHhhhcc---------ccC--CCccHHHHHHcCccceecCcCcHHHHHHHHHh
Q 017331 147 LFPDIGASYFLSRLPG---------FFG--ARLDGAEMRACGLATHFVPSSRLALLEEALYK 197 (373)
Q Consensus 147 ~~p~~g~~~~L~rl~g---------l~G--~~i~a~eA~~~GLv~~vv~~~~l~~~~~al~~ 197 (373)
+.|++-|..+|+.+.. .|. +.=+-.+|+++|.+|.++.|=.++.+.++|.+
T Consensus 55 YmPd~~Gi~lL~~ir~~~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~ 116 (224)
T COG4565 55 YMPDGNGIELLPELRSQHYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTR 116 (224)
T ss_pred ccCCCccHHHHHHHHhcCCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHH
Confidence 3588888888887764 222 33355799999999999998777777777654
No 159
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=47.78 E-value=40 Score=31.10 Aligned_cols=95 Identities=8% Similarity=0.054 Sum_probs=56.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCceEEEE--ecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCc
Q 017331 30 LNALSAQMISRLLELFQRYETDSNVKLLIL--KGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKP 107 (373)
Q Consensus 30 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP 107 (373)
...+..+.-..|.+++.+.-.+..-|.||+ -..|..++- -.|+. -+..++....+.+..-+...-|
T Consensus 40 ~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~gr---reEll---------Gi~~alAhla~a~a~AR~~GHp 107 (234)
T PF06833_consen 40 HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYGR---REELL---------GINQALAHLAKAYALARLAGHP 107 (234)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccch---HHHHh---------hHHHHHHHHHHHHHHHHHcCCC
Confidence 477887777777766655443333343333 222222211 01111 1123334444555566678899
Q ss_pred EEEEEcccccchHh-HhhhcCCeEEEeCCe
Q 017331 108 QVSILNGIVMGGGA-GVSIHGRFRVATENS 136 (373)
Q Consensus 108 ~IaavnG~a~GgG~-~lala~D~ria~~~a 136 (373)
+|+.|-|.|++||| .-.+.+|-.||-+++
T Consensus 108 vI~Lv~G~A~SGaFLA~GlqA~rl~AL~ga 137 (234)
T PF06833_consen 108 VIGLVYGKAMSGAFLAHGLQANRLIALPGA 137 (234)
T ss_pred eEEEEecccccHHHHHHHHHhcchhcCCCC
Confidence 99999999999987 677888888776643
No 160
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=45.66 E-value=79 Score=24.44 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=34.9
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC
Q 017331 10 QVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG 63 (373)
Q Consensus 10 ~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g 63 (373)
.+.++..+++.+|++..+ ++......+.+.+..+..++..+.|+|--.+
T Consensus 4 ~i~~~~~~~~~vi~~~G~-----l~~~~~~~~~~~l~~~~~~~~~~~vvidls~ 52 (108)
T TIGR00377 4 NIETEVQEGVVIVRLSGE-----LDAHTAPLLREKVTPAAERTGPRPIVLDLED 52 (108)
T ss_pred EEEEEEECCEEEEEEecc-----cccccHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 477888899999999854 4555566666667666544567888887655
No 161
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=40.06 E-value=22 Score=26.03 Aligned_cols=40 Identities=13% Similarity=0.309 Sum_probs=31.9
Q ss_pred CCcHHhhHhhhhccCCCCCCCCCCCccCCCHHHHHhhccCCCCC
Q 017331 309 SKDFFEGCRAILLDKDKNPKWKPSKLELVNDNMVDQYFSKINDD 352 (373)
Q Consensus 309 s~d~~egi~a~l~eK~r~P~w~~~~~~~v~~~~i~~~~~~~~~~ 352 (373)
|..+..|-...| +++|+| |-.+ +.++.++|..+.+.+|..
T Consensus 28 s~nCV~Gn~~vF-~~~rkP-WI~P--d~~~ve~i~~vi~sCPSG 67 (74)
T COG3592 28 SGNCVRGNPKVF-NLGRKP-WIMP--DAVDVEEIVKVIDTCPSG 67 (74)
T ss_pred ccceecCCHhhc-ccCCCC-ccCC--CCCCHHHHHHHHHhCCch
Confidence 457788887775 666888 9887 789999999999887663
No 162
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=39.69 E-value=1.4e+02 Score=23.01 Aligned_cols=47 Identities=23% Similarity=0.137 Sum_probs=33.5
Q ss_pred EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC
Q 017331 12 LEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG 63 (373)
Q Consensus 12 ~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g 63 (373)
.++..+++.++.+..| |+.....++.+.+..+-..+.++.+||.-++
T Consensus 2 ~~~~~~~~~vi~l~G~-----L~f~~~~~~~~~l~~~~~~~~~~~vilDls~ 48 (106)
T TIGR02886 2 EFEVKGDVLIVRLSGE-----LDHHTAERVRRKIDDAIERRPIKHLILNLKN 48 (106)
T ss_pred eEEEECCEEEEEEecc-----cchhhHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 4577899999999776 5666666777777665433457888887665
No 163
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=39.44 E-value=15 Score=24.49 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=16.5
Q ss_pred ccCCCccHHHHHHcCccce
Q 017331 163 FFGARLDGAEMRACGLATH 181 (373)
Q Consensus 163 l~G~~i~a~eA~~~GLv~~ 181 (373)
-+|++++-++|.+.||+|.
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 5899999999999999973
No 164
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=38.43 E-value=1.3e+02 Score=23.72 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=40.0
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCC--------ceEEEEecCC
Q 017331 11 VLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSN--------VKLLILKGKG 63 (373)
Q Consensus 11 v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~--------v~~vVltg~g 63 (373)
+.++..+++.++.++.| |+......+.+.+..+..... ++.|||--.+
T Consensus 2 ~~~~~~~~v~ii~~~g~-----l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~ 57 (117)
T PF01740_consen 2 IEIETHDGVLIIRLDGP-----LFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSG 57 (117)
T ss_dssp CEEEEETTEEEEEEESE-----ESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETT
T ss_pred CeeEEECCEEEEEEeeE-----EEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEe
Confidence 46788999999999987 888888999999988877654 7899997655
No 165
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=36.71 E-value=99 Score=25.97 Aligned_cols=52 Identities=21% Similarity=0.283 Sum_probs=25.0
Q ss_pred HHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEEcccc
Q 017331 40 RLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSILNGIV 116 (373)
Q Consensus 40 eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG~a 116 (373)
.+.+.++.+..||++++|++.-.+ ..|- +.+.+........ ||+|+..-|..
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~-----~~d~-------------------~~f~~~~~~a~~~-KPVv~lk~Grt 92 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEG-----IGDG-------------------RRFLEAARRAARR-KPVVVLKAGRT 92 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES-------S-H-------------------HHHHHHHHHHCCC-S-EEEEE----
T ss_pred CHHHHHHHHhcCCCCCEEEEEccC-----CCCH-------------------HHHHHHHHHHhcC-CCEEEEeCCCc
Confidence 355667777888888888886543 0010 1222334455555 99999998873
No 166
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=36.20 E-value=97 Score=30.00 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=12.3
Q ss_pred hCCCcEEEEEccccc
Q 017331 103 TYTKPQVSILNGIVM 117 (373)
Q Consensus 103 ~~~kP~IaavnG~a~ 117 (373)
...||+|+.+-|...
T Consensus 250 ~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 250 PIKKPVVSFIAGITA 264 (317)
T ss_pred cCCCcEEEEEecCCC
Confidence 358999999998763
No 167
>PLN02522 ATP citrate (pro-S)-lyase
Probab=33.90 E-value=1.1e+02 Score=32.43 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=12.6
Q ss_pred CCCcEEEEEccccc
Q 017331 104 YTKPQVSILNGIVM 117 (373)
Q Consensus 104 ~~kP~IaavnG~a~ 117 (373)
..||+|+.+-|.+-
T Consensus 249 ~~KPVVa~kaGrsa 262 (608)
T PLN02522 249 VSKPVVAWVSGTCA 262 (608)
T ss_pred CCCCEEEEeccCCC
Confidence 68999999999886
No 168
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=33.39 E-value=32 Score=34.45 Aligned_cols=96 Identities=15% Similarity=0.132 Sum_probs=56.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEE--ecCC-CccccccChhHHhhhcc-----CCChhhHHHH
Q 017331 19 VRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLIL--KGKG-RAFCAGGDVAAVVRGIN-----EGDWISGAKF 90 (373)
Q Consensus 19 v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl--tg~g-~~F~aG~Dl~~~~~~~~-----~~~~~~~~~~ 90 (373)
|+.|.| +.|+.....+|..++..+..+. ++++|| ++.+ +..+...++..+--... .........+
T Consensus 205 IGyI~I------~~F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~ 277 (406)
T COG0793 205 IGYIRI------PSFGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVY 277 (406)
T ss_pred EEEEEe------cccccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeec
Confidence 777776 4577778888999999998875 898888 4554 55566666654321100 0000000000
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEcccccchHhHhhhc
Q 017331 91 FSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIH 126 (373)
Q Consensus 91 ~~~~~~l~~~i~~~~kP~IaavnG~a~GgG~~lala 126 (373)
.... .-...++|+|..||+....++=-++.+
T Consensus 278 ~~~~-----~~~~~~~PlvvLvn~~SASAsEI~aga 308 (406)
T COG0793 278 FSAS-----GEALYDGPLVVLVNEGSASASEIFAGA 308 (406)
T ss_pred cccc-----cccCCCCCEEEEECCCCccHHHHHHHH
Confidence 0000 000458999999999987776444443
No 169
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=32.49 E-value=56 Score=28.05 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 017331 33 LSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSIL 112 (373)
Q Consensus 33 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav 112 (373)
++++. ..++|..+..||++++|+|-+.+++ +--.+.. ..+...+..... ....+|+|+.|
T Consensus 56 id~~~---~~~~l~~~~~Dp~v~vIlvd~~~G~----g~~~~~A-----------~~l~~a~~~~~~--~~~~~pvVa~v 115 (153)
T PF00549_consen 56 IDPST---RNEALEIEAADPEVKVILVDIVGGI----GSCEDPA-----------AGLIPAIKEAKA--EGRKKPVVARV 115 (153)
T ss_dssp T-SSH---HHHHHHHHHTSTTESEEEEEEESSS----SSHHHHH-----------HHHHHHHSHCTH--TTT-SEEEEEE
T ss_pred cCHHH---HHHHHHHHhcCCCccEEEEEecccc----CchHHHH-----------HHHHHHHHhccc--cCCCCcEEEEe
Confidence 44444 4455777788999999999764431 1112111 111111111100 34689999999
Q ss_pred cccccc
Q 017331 113 NGIVMG 118 (373)
Q Consensus 113 nG~a~G 118 (373)
-|-..-
T Consensus 116 ~GT~~d 121 (153)
T PF00549_consen 116 CGTNAD 121 (153)
T ss_dssp ESTTCH
T ss_pred eeecCC
Confidence 998766
No 170
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=27.48 E-value=1.4e+02 Score=28.57 Aligned_cols=13 Identities=31% Similarity=0.664 Sum_probs=11.1
Q ss_pred CCcEEEEEccccc
Q 017331 105 TKPQVSILNGIVM 117 (373)
Q Consensus 105 ~kP~IaavnG~a~ 117 (373)
.||+|+..-|..-
T Consensus 233 ~KPVV~lk~Grs~ 245 (300)
T PLN00125 233 EKPVVAFIAGLTA 245 (300)
T ss_pred CCCEEEEEecCCC
Confidence 8999999988763
No 171
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=26.55 E-value=1e+02 Score=25.40 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=29.9
Q ss_pred EEEEEcCCCCCCCC--C----------HHHHHHHHHHHHHH--HcCCCceEEEEecCC
Q 017331 20 RILTLNRPRQLNAL--S----------AQMISRLLELFQRY--ETDSNVKLLILKGKG 63 (373)
Q Consensus 20 ~~i~lnrp~~~Nal--~----------~~~~~eL~~~l~~~--~~d~~v~~vVltg~g 63 (373)
..|+.+-|.|+..= + ..++.++.+.+.+. ...+.+++|||.|.|
T Consensus 26 ~~i~~~ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPG 83 (133)
T PF03464_consen 26 QRIESNIPGKHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVKCIIIAGPG 83 (133)
T ss_dssp EEEE-GHCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCSEEEEEEST
T ss_pred EEEEecCCCccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECCH
Confidence 45677778886542 2 35566666777666 556789999998876
No 172
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=24.81 E-value=1.1e+02 Score=24.28 Aligned_cols=67 Identities=18% Similarity=0.291 Sum_probs=32.1
Q ss_pred cCcCcHHHHHHHHHhccCCCHHHHHHHHHHhccC----CCCCCcchhhHHHHHHHhcCcCCHHHHHHHHHh
Q 017331 183 VPSSRLALLEEALYKVNSSDPAVISAVIDKFSLE----PYLKDHSAYHWMDVIDKCFSRRTVEEILSALES 249 (373)
Q Consensus 183 v~~~~l~~~~~al~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~f~~~~~~ei~~~L~~ 249 (373)
.+++++..+..+++++..-++..+..++++|... ..+..-........+.++|..+-..+|++.+..
T Consensus 30 l~~~ei~~i~~~ma~l~~v~~~~~~~Vl~EF~~~~~~~~~~~~gg~~~~~~lL~~alg~~~a~~il~~~~~ 100 (108)
T PF14842_consen 30 LDEEEIERISREMAKLGSVSPEEVEEVLEEFYDEIRAQGGIVSGGRDFARRLLEKALGEEKAKEILDRLEQ 100 (108)
T ss_dssp S-HHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHTT---S-HHHHHHH-HHHHS---HHHHH------
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHccccccChHHHHHHHHHHHCCHHHHHHHHHHHhc
Confidence 4567788888899889888899999999888652 111111122233455666676767776665544
No 173
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=24.51 E-value=2e+02 Score=21.42 Aligned_cols=48 Identities=23% Similarity=0.252 Sum_probs=29.5
Q ss_pred EEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-Ccc
Q 017331 13 EEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAF 66 (373)
Q Consensus 13 ~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F 66 (373)
....+++.++.+..+ ++..-...+.+.+.....+. .+.|+|...+ +.+
T Consensus 3 ~~~~~~~~ii~l~G~-----l~~~~~~~~~~~~~~~~~~~-~~~viid~~~v~~i 51 (99)
T cd07043 3 VEERGGVLVVRLSGE-----LDAATAPELREALEELLAEG-PRRLVLDLSGVTFI 51 (99)
T ss_pred eEEECCEEEEEEece-----ecccchHHHHHHHHHHHHcC-CCEEEEECCCCCEE
Confidence 445678888898765 33344455655555554433 6788887665 443
No 174
>PRK14556 pyrH uridylate kinase; Provisional
Probab=24.07 E-value=2.3e+02 Score=26.37 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=33.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCcccc
Q 017331 28 RQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCA 68 (373)
Q Consensus 28 ~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~a 68 (373)
++.+.+|.+.+..+.+.+..+.+ -.+++.|+.|.|..|..
T Consensus 30 ~~~~~~d~~~~~~~a~~i~~~~~-~g~~i~iVvGGGni~Rg 69 (249)
T PRK14556 30 DQGFGINVESAQPIINQIKTLTN-FGVELALVVGGGNILRG 69 (249)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHh-CCcEEEEEECCCHHHhC
Confidence 34567999999999999999875 36899999999988874
No 175
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=23.72 E-value=48 Score=32.94 Aligned_cols=101 Identities=13% Similarity=0.124 Sum_probs=52.2
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEe--cCC-CccccccChhHHhhhccCCChhhHH--HHH
Q 017331 17 SFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILK--GKG-RAFCAGGDVAAVVRGINEGDWISGA--KFF 91 (373)
Q Consensus 17 ~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVlt--g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~--~~~ 91 (373)
++|+.|.| +.|+.....++.+++..+... .++.+||- +.+ +.+..+.++..+.-. .+..-... .-.
T Consensus 194 ~~IgYi~i------~~F~~~~~~~~~~~l~~l~~~-~~~glIlDLR~N~GG~~~~a~~ia~~f~~--~~~~~~~~~~~~~ 264 (389)
T PLN00049 194 PKIGYIKL------TTFNQNASSAVKEAIETLRAN-GVDAFVLDLRDNSGGLFPAGIEIAKLWLD--KGVIVYIADSRGV 264 (389)
T ss_pred CCEEEEEe------ccccchhHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCCHHHHHHHHHHhcC--CCcEEEEecCCCc
Confidence 36777777 445666788999999998754 57888884 443 333333333322110 00000000 000
Q ss_pred HHHHHHHHH-HHhCCCcEEEEEcccccchHhHhhhc
Q 017331 92 SKEFILNYL-MATYTKPQVSILNGIVMGGGAGVSIH 126 (373)
Q Consensus 92 ~~~~~l~~~-i~~~~kP~IaavnG~a~GgG~~lala 126 (373)
...+..... .....+|++..||+....++=.++.+
T Consensus 265 ~~~~~~~~~~~~~~~~PvvVLvn~~TaSasEi~a~a 300 (389)
T PLN00049 265 RDIYDADGSSAIATSEPLAVLVNKGTASASEILAGA 300 (389)
T ss_pred eeEEecCCCccccCCCCEEEEECCCCccHHHHHHHH
Confidence 000000000 11246899999999998776544443
No 176
>PRK14053 methyltransferase; Provisional
Probab=23.03 E-value=1.1e+02 Score=26.99 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=45.4
Q ss_pred EEEEEeCCEEEEEEcCCCC---CCCCCHHHHH---HHHHHHHHHHcCCCceEEEEecCC-CccccccChhHHhh
Q 017331 11 VLEEETSFVRILTLNRPRQ---LNALSAQMIS---RLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVR 77 (373)
Q Consensus 11 v~~~~~~~v~~i~lnrp~~---~Nal~~~~~~---eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~~ 77 (373)
+.-+-+..|+++||...-. .-|+...... .+...+..+-.||+||.+||+|.. +..-+|--|..+..
T Consensus 16 ~vG~~~S~VAVvTL~S~~~~~~gaAI~G~c~TENlGIEKvI~NvisNpNIRflilcG~Ev~GHltGqsL~aL~~ 89 (194)
T PRK14053 16 TVGNPESRIAVVTLASSIESFPEAAIWGSSKTENLGVEKIIVNVISNSNIRYVLLCGGESRGHLAGHSLLAIHA 89 (194)
T ss_pred EeCCCCCcEEEEEccccccccCCceEEeeccccccCHHHHHHHhhcCCCceEEEEecCccCCccccHHHHHHHH
Confidence 4455567899999975321 1223222222 356777888889999999999987 77777877777664
No 177
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=22.51 E-value=2.7e+02 Score=26.49 Aligned_cols=116 Identities=15% Similarity=0.154 Sum_probs=66.9
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChhHHh-hh----ccCCChhhHHHHHHH
Q 017331 20 RILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVV-RG----INEGDWISGAKFFSK 93 (373)
Q Consensus 20 ~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~-~~----~~~~~~~~~~~~~~~ 93 (373)
-++.+|.. .|-++...+..+.++..++--.+.-++-||-|.. +.|.---|-.... .. ........+..+-+.
T Consensus 130 Nilpi~Gs--~h~Vt~~~lAa~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRR 207 (329)
T COG3660 130 NILPINGS--PHNVTSQRLAALREAFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRR 207 (329)
T ss_pred ceeeccCC--CCcccHHHhhhhHHHHHhhCCCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecC
Confidence 35677765 3778999999999999888555666666666655 8887655543321 10 000000000111111
Q ss_pred HH-HHHHHHH-hCCCcEEEEEcccc--cchHhHhhhcCCeEEEeCCee
Q 017331 94 EF-ILNYLMA-TYTKPQVSILNGIV--MGGGAGVSIHGRFRVATENSV 137 (373)
Q Consensus 94 ~~-~l~~~i~-~~~kP~IaavnG~a--~GgG~~lala~D~ria~~~a~ 137 (373)
.- .+-..|. +++--.+...|+-- ..--+.+..++|++|+|.++.
T Consensus 208 Tp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSi 255 (329)
T COG3660 208 TPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSI 255 (329)
T ss_pred CcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecchh
Confidence 11 1111222 35556677788873 334578889999999998875
No 178
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=21.90 E-value=3.1e+02 Score=25.41 Aligned_cols=54 Identities=11% Similarity=0.123 Sum_probs=39.2
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCcc
Q 017331 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAF 66 (373)
Q Consensus 7 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F 66 (373)
.|..|.+...|.+. .++..+.+|++.+..+.+.+.++... .+++-|+.|.|+.|
T Consensus 4 ~~~rillkLsGe~l-----~g~~~~gid~~~i~~~a~~i~~~~~~-g~eV~iVvGGGni~ 57 (238)
T COG0528 4 KYMRILLKLSGEAL-----AGEQGFGIDPEVLDRIANEIKELVDL-GVEVAVVVGGGNIA 57 (238)
T ss_pred ceEEEEEEeeccee-----cCCCCCCCCHHHHHHHHHHHHHHHhc-CcEEEEEECCCHHH
Confidence 34556666655544 24334779999999999999999864 67888888877554
No 179
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=21.66 E-value=3.3e+02 Score=26.24 Aligned_cols=31 Identities=6% Similarity=0.070 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEec
Q 017331 31 NALSAQMISRLLELFQRYETDSNVKLLILKG 61 (373)
Q Consensus 31 Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg 61 (373)
--|+++.+.+|.+.+++.-+++++..+|+|.
T Consensus 55 s~~t~~~w~~la~~i~~~~~~~~~dG~VVtH 85 (323)
T smart00870 55 SNMTPADWLKLAKRINEALADDGYDGVVVTH 85 (323)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCEEEEec
Confidence 4589999999999998765556666666653
No 180
>PF08810 KapB: Kinase associated protein B; InterPro: IPR014916 This bacterial protein forms an anti-parallel beta sheet with an extending alpha helical region. ; PDB: 1Y71_B.
Probab=21.44 E-value=1.1e+02 Score=24.70 Aligned_cols=31 Identities=13% Similarity=0.449 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHhcccccccHHHHHHHHHHHh
Q 017331 238 RTVEEILSALESESTNRADAWISDAIQSLKK 268 (373)
Q Consensus 238 ~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~ 268 (373)
.|+...+..++......+++||+++++.|..
T Consensus 76 ~SLq~A~~~~~~~L~~~~~~~a~~sL~~L~~ 106 (112)
T PF08810_consen 76 ESLQQALEKLKEKLKEDDSEWAQRSLENLEE 106 (112)
T ss_dssp HHHHHHHHHHHHTTTT--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 4677777777777776778999888877754
No 181
>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=21.36 E-value=1.4e+02 Score=29.83 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=25.1
Q ss_pred cccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHh
Q 017331 66 FCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMAT 103 (373)
Q Consensus 66 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 103 (373)
||.|+||..+......-.+...+.|..++...+..|+.
T Consensus 90 yC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~~ 127 (429)
T KOG0595|consen 90 YCNGGDLSDYIRRRGRLPEATARHFMQQLASALQFLHE 127 (429)
T ss_pred eCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 79999999987655433445566666666555555543
No 182
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=20.60 E-value=1e+02 Score=28.29 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=41.8
Q ss_pred HHHHHHHHHcC-CCceEEEEecCCCccccccChhHHhhhccCCChhhHHHHHHHHHHHHHHHHhCCCcEEEEEcc-cccc
Q 017331 41 LLELFQRYETD-SNVKLLILKGKGRAFCAGGDVAAVVRGINEGDWISGAKFFSKEFILNYLMATYTKPQVSILNG-IVMG 118 (373)
Q Consensus 41 L~~~l~~~~~d-~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IaavnG-~a~G 118 (373)
..++|+.+..+ .+|.-||..+.-+.+..|+|..-+.. +.--|..--.-|+| .|.|
T Consensus 108 a~~AL~~~g~~~~dIthlv~vs~TG~~~PglD~~l~~~-----------------------LgL~~~v~R~~i~~~GC~g 164 (226)
T PF00195_consen 108 ARKALAEAGLDPSDITHLVTVSCTGIAAPGLDARLINR-----------------------LGLRPDVQRTPIFGMGCAG 164 (226)
T ss_dssp HHHHHHHHTS-GGGECEEEEEESSSSECS-HHHHHHHH-----------------------HT--TTSEEEEEES-GGGH
T ss_pred HHHHHHHcCCCCcccceEEEEecCCcCCCchhHHHHhc-----------------------CCCCCCcEEEEEeccchhh
Confidence 34566666544 35777777665567888888754322 11122222333444 4777
Q ss_pred hHhHhhhcCCeEEEeCCee
Q 017331 119 GGAGVSIHGRFRVATENSV 137 (373)
Q Consensus 119 gG~~lala~D~ria~~~a~ 137 (373)
|...|..+.||.-+.++++
T Consensus 165 g~~~L~~A~~~~~~~p~a~ 183 (226)
T PF00195_consen 165 GAAGLRRAKDIARANPGAR 183 (226)
T ss_dssp HHHHHHHHHHHHHHSTT-E
T ss_pred HHHHHHHHHHHHhCCccce
Confidence 7788999988765555554
No 183
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=20.52 E-value=1.3e+02 Score=26.44 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=41.9
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCC------HHHH---HHHHHHHHHHHcCCCceEEEEecCC-CccccccChhHHh
Q 017331 11 VLEEETSFVRILTLNRPRQLNALS------AQMI---SRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVV 76 (373)
Q Consensus 11 v~~~~~~~v~~i~lnrp~~~Nal~------~~~~---~eL~~~l~~~~~d~~v~~vVltg~g-~~F~aG~Dl~~~~ 76 (373)
+.-+-+..|+++||........+. .... -.+...+..+-.||.||.+||+|.. +..-+|--|..|.
T Consensus 16 ~vGdp~S~VAV~TL~S~~~~~~l~~gaAI~G~~~TENlGIEKvI~NvisNpnIRflilcG~Ev~GH~~Gqsl~aLh 91 (176)
T PF04208_consen 16 VVGDPESPVAVCTLGSHLLQAPLDAGAAIAGPCKTENLGIEKVIANVISNPNIRFLILCGSEVKGHLTGQSLLALH 91 (176)
T ss_pred EECCCCCCEEEEECccccchhhhhcCceeeecccccccCHHHHHHHHhcCCCceEEEEecCccCCCcchHHHHHHH
Confidence 445556789999997643211111 1111 1356778888889999999999976 5555565555544
No 184
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=20.18 E-value=2.4e+02 Score=24.78 Aligned_cols=37 Identities=27% Similarity=0.505 Sum_probs=27.9
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEE
Q 017331 20 RILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLIL 59 (373)
Q Consensus 20 ~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl 59 (373)
-.+.||.|- +.||......+.+.+.++..+ ...+|++
T Consensus 154 ~llllDEPt--~~LD~~~~~~~~~~l~~~~~~-~~tvi~~ 190 (211)
T cd03225 154 DILLLDEPT--AGLDPAGRRELLELLKKLKAE-GKTIIIV 190 (211)
T ss_pred CEEEEcCCc--ccCCHHHHHHHHHHHHHHHHc-CCEEEEE
Confidence 357788885 899999999999999988754 4334443
Done!