BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017332
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/355 (30%), Positives = 185/355 (52%), Gaps = 26/355 (7%)
Query: 34 VKGLVDAGVVNIPRIFIRPPAELAE--ELTTHQSK---LQVPVIDLDGIRYNQ---LEDI 85
V+ L +G+++IP+ +IRP EL ++ + K QVP IDL I + E+
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 86 VDQVRAASQTWGFFQVINHGVPLNLIQEMIEGVHKFNEQDVEVKKQFYTRERTRNVR-FN 144
+++++ AS WG +INHG+P +L++ + + +F VE K+++ + T ++ +
Sbjct: 67 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 145 SNFDLYHSRTASWRDTLAISTSGTKSLEPNEWPKVCRDTI---MEYIKEVSKLGETLFEI 201
S S W D + + + WPK D I EY K + L +F+
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 202 LSMALGLKPEYL-KDMGCFN--LYSVICHYYPHCPQPELTLGARTHSDPSFLTILLQDQI 258
LS+ LGL+P+ L K++G L + +YYP CPQPEL LG H+D S LT +L + +
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMV 246
Query: 259 GGLQVFNENQWIDVNPISGGLVVNIGDFLQVVSNDELKSVDHRVVANVHATARVSVACFF 318
GLQ+F E +W+ + +V++IGD L+++SN + KS+ HR + N R+S A F
Sbjct: 247 PGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVN-KEKVRISWAVFC 305
Query: 319 TGHTTETQKPFGPIKELISKENPPVYREFLVGEYFSKYFSKELESKSAGLKQFEV 373
+ + P+ E++S E+P ++ + F++ +E K G +Q E+
Sbjct: 306 --EPPKDKIVLKPLPEMVSVESP--------AKFPPRTFAQHIEHKLFGKEQEEL 350
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/355 (30%), Positives = 185/355 (52%), Gaps = 26/355 (7%)
Query: 34 VKGLVDAGVVNIPRIFIRPPAELAE--ELTTHQSK---LQVPVIDLDGIRYNQ---LEDI 85
V+ L +G+++IP+ +IRP EL ++ + K QVP IDL I + E+
Sbjct: 6 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 65
Query: 86 VDQVRAASQTWGFFQVINHGVPLNLIQEMIEGVHKFNEQDVEVKKQFYTRERTRNVR-FN 144
+++++ AS WG +INHG+P +L++ + + +F VE K+++ + T ++ +
Sbjct: 66 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 125
Query: 145 SNFDLYHSRTASWRDTLAISTSGTKSLEPNEWPKVCRDTI---MEYIKEVSKLGETLFEI 201
S S W D + + + WPK D I EY K + L +F+
Sbjct: 126 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 185
Query: 202 LSMALGLKPEYL-KDMGCFN--LYSVICHYYPHCPQPELTLGARTHSDPSFLTILLQDQI 258
LS+ LGL+P+ L K++G L + +YYP CPQPEL LG H+D S LT +L + +
Sbjct: 186 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMV 245
Query: 259 GGLQVFNENQWIDVNPISGGLVVNIGDFLQVVSNDELKSVDHRVVANVHATARVSVACFF 318
GLQ+F E +W+ + +V++IGD L+++SN + KS+ HR + N R+S A F
Sbjct: 246 PGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVN-KEKVRISWAVFC 304
Query: 319 TGHTTETQKPFGPIKELISKENPPVYREFLVGEYFSKYFSKELESKSAGLKQFEV 373
+ + P+ E++S E+P ++ + F++ +E K G +Q E+
Sbjct: 305 --EPPKDKIVLKPLPEMVSVESP--------AKFPPRTFAQHIEHKLFGKEQEEL 349
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 157 bits (398), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 109/357 (30%), Positives = 180/357 (50%), Gaps = 30/357 (8%)
Query: 34 VKGLVDAGVVNIPRIFIRPPAELA-------EELTTHQSKLQVPVIDLDGIRYNQ---LE 83
V+ L +G+++IP+ +IRP EL EE + QVP IDL I + E
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEE--KKEDGPQVPTIDLKNIESDDEKIRE 64
Query: 84 DIVDQVRAASQTWGFFQVINHGVPLNLIQEMIEGVHKFNEQDVEVKKQFYTRERTRNVR- 142
+ +++++ AS WG +INHG+P +L + + + +F VE K+++ + T ++
Sbjct: 65 NCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 124
Query: 143 FNSNFDLYHSRTASWRDTLAISTSGTKSLEPNEWPKVCRDTI---MEYIKEVSKLGETLF 199
+ S S W D + + + WPK D I EY K + L +F
Sbjct: 125 YGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVF 184
Query: 200 EILSMALGLKPEYL-KDMGCFN--LYSVICHYYPHCPQPELTLGARTHSDPSFLTILLQD 256
+ LS+ LGL+P+ L K++G L +YYP CPQPEL LG H+D S LT +L +
Sbjct: 185 KALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHN 244
Query: 257 QIGGLQVFNENQWIDVNPISGGLVVNIGDFLQVVSNDELKSVDHRVVANVHATARVSVAC 316
+ GLQ+F E +W+ + +V +IGD L+++SN + KS+ HR + N R+S A
Sbjct: 245 XVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVN-KEKVRISWAV 303
Query: 317 FFTGHTTETQKPFGPIKELISKENPPVYREFLVGEYFSKYFSKELESKSAGLKQFEV 373
F + + P+ E +S E+P ++ + F++ +E K G +Q E+
Sbjct: 304 FC--EPPKDKIVLKPLPEXVSVESP--------AKFPPRTFAQHIEHKLFGKEQEEL 350
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 152/308 (49%), Gaps = 28/308 (9%)
Query: 70 PVIDLDGIRYNQLEDIVDQVRAASQTWGFFQVINHGVP---LNLIQEMIEGVHK------ 120
P+I LD + + + ++ A + WGFF+++NHG+P + +++ +G +K
Sbjct: 5 PIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQR 64
Query: 121 FNEQDVEVKKQFYTRERTRNVRFNSNFDLYHSRTASWRDTLAISTSGTKSLEPNEWPKVC 180
F E V K + + + S F L H L IS E+ +V
Sbjct: 65 FKEL-VASKALEGVQAEVTDXDWESTFFLKH---------LPISNISEVPDLDEEYREVX 114
Query: 181 RDTIMEYIKEVSKLGETLFEILSMALGLKPEYLKDMGCFNL---YSVICHYYPHCPQPEL 237
RD + K + KL E L ++L LGL+ YLK+ + + YP CP+P+L
Sbjct: 115 RD----FAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDL 170
Query: 238 TLGARTHSDPSFLTILLQD-QIGGLQVFNENQWIDVNPISGGLVVNIGDFLQVVSNDELK 296
G R H+D + +L QD ++ GLQ+ + QWIDV P +VVN+GD L+V++N + K
Sbjct: 171 IKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYK 230
Query: 297 SVDHRVVANVHATARVSVACFFTGHTTETQKPFGPIKELISKENPPVYREFLVGEYFSKY 356
SV HRV+A AR S+A F+ + P + E ++EN VY +F+ +Y Y
Sbjct: 231 SVXHRVIAQKDG-ARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLY 289
Query: 357 FSKELESK 364
+ ++K
Sbjct: 290 AGLKFQAK 297
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 8/194 (4%)
Query: 173 PNEWPKVCRDTIMEYIKEVSKLGETLFEILSMALGLKPEYLKDMGCFNLYSVICHYYPHC 232
P E P D Y + G + E ++ L L+ ++ K + +YP
Sbjct: 121 PAEIPAFKHDVSWLY-NSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPI 179
Query: 233 PQPELTLGARTHSDPSFLTILLQDQIGGLQVFN-ENQWIDVNPISGGLVVNIGDFLQVVS 291
P+ + A H D + +T+LL + GGL+V + + QW+ +NP G LV+NIGD L+ ++
Sbjct: 180 PKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLT 239
Query: 292 NDELKSVDHRVV---ANVHATARVSVACFFTGHTTETQKPFGPIKELISKENPPVYREFL 348
N+ L S HRVV R S FF ++ + ++ ++ ENP Y E +
Sbjct: 240 NNVLPSTVHRVVNPPPERRGVPRYSTP-FFLHFASDYE--IKTLQNCVTAENPDRYPESI 296
Query: 349 VGEYFSKYFSKELE 362
+ F + +E++
Sbjct: 297 TADEFLQQRLREIK 310
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 109/278 (39%), Gaps = 50/278 (17%)
Query: 65 SKLQVPVID---LDGIRYNQLEDIVDQVRAASQTWGFFQVINHGVPLNLIQEMIEGVHK- 120
SK VP ID L G + Q+ AAS+ GFF +NHG+ + + + + H
Sbjct: 5 SKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMS 64
Query: 121 -FNEQDVEVKKQFYTRERTRNVR------------------FNSNFDLYHSRTASWRDTL 161
E+ ++ + Y +E VR N NF H R
Sbjct: 65 ITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRI------- 117
Query: 162 AISTSGTKSLEPNEWPKVCR-----DTIMEYIKEVSKLGETLFEILSMALGLKPEYLKDM 216
+ T + E N WP + D +Y +V L L + ++ALG + +
Sbjct: 118 ---QAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARH 174
Query: 217 GCFN--LYSVICHYYPHC-PQPELT---------LGARTHSDPSFLTILLQDQIGGLQVF 264
+ L SV+ YP+ P PE L H D S +T+L Q + LQV
Sbjct: 175 FKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVE 234
Query: 265 NENQWIDVNPISGGLVVNIGDFLQVVSNDELKSVDHRV 302
+ D+ G ++N G ++ ++N+ K+ HRV
Sbjct: 235 TAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRV 272
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 109/278 (39%), Gaps = 50/278 (17%)
Query: 65 SKLQVPVIDLD---GIRYNQLEDIVDQVRAASQTWGFFQVINHGVPLNLIQEMIEGVHK- 120
SK VP ID+ G + Q+ AAS+ GFF +NHG+ + + + + H
Sbjct: 5 SKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMS 64
Query: 121 -FNEQDVEVKKQFYTRERTRNVR------------------FNSNFDLYHSRTASWRDTL 161
E+ ++ + Y +E VR N NF H R
Sbjct: 65 ITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRI------- 117
Query: 162 AISTSGTKSLEPNEWPKVCR-----DTIMEYIKEVSKLGETLFEILSMALGLKPEYLKDM 216
+ T + E N WP + D +Y +V L L + ++ALG + +
Sbjct: 118 ---QAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARH 174
Query: 217 GCFN--LYSVICHYYPHC-PQPELT---------LGARTHSDPSFLTILLQDQIGGLQVF 264
+ L SV+ YP+ P PE L H D S +T+L Q + LQV
Sbjct: 175 FKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVE 234
Query: 265 NENQWIDVNPISGGLVVNIGDFLQVVSNDELKSVDHRV 302
+ D+ G ++N G ++ ++N+ K+ HRV
Sbjct: 235 TAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRV 272
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 20/163 (12%)
Query: 177 PKVCRDTIMEYIKEVSKLGETLFEILSMALGLKPEYLKDMGCFNLYSVIC---------- 226
P R I+ Y ++ + L L E + P+ +K L I
Sbjct: 99 PDSLRANILAYYEKANTLASELLEWIET---YSPDEIKAKFSIPLPEXIANSHKTLLRIL 155
Query: 227 HYYPHCPQPEL-TLGARTHSDPSFLTILLQDQIGGLQV-FNENQWIDVNPISGGLVVNIG 284
HY P E + A H D + +T+L GLQV + W+DV G +++NIG
Sbjct: 156 HYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIG 215
Query: 285 DFLQVVSNDELKSVDHRVVANVHAT----ARVSVACFFTGHTT 323
D LQ S+ S HRV+ N T +R+S+ F H +
Sbjct: 216 DXLQEASDGYFPSTSHRVI-NPEGTDKTKSRISLPLFLHPHPS 257
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 152 SRTASWRDTLAISTSGTKSLEPNEWPKVCRDTIMEYIKEVSKLGETLFEILSMALGLKPE 211
S+T SW+ T+ + G+ +L E +V DT +I + + +++ ALG K +
Sbjct: 190 SKTDSWQITMKGVSVGSSTLLCEEGCEVVVDTGSSFISAPT----SSLKLIMQALGAKEK 245
Query: 212 YLKDMGCFNLYSVICHYYPHCPQPELTLGARTHS 245
L + Y V C P P LG R ++
Sbjct: 246 RLHE------YVVSCSQVPTLPDISFNLGGRAYT 273
>pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
pdb|3ADI|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
pdb|3ADI|B Chain B, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
pdb|3ADI|C Chain C, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 73
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 52 PPAELAEELTTHQSKLQVPVIDLDGIRYNQLEDIVDQVRAASQT 95
P E+ +E +H+S Q VI LDG+RYN L ++ +AA Q+
Sbjct: 21 PVYEIVKEGPSHKSLFQSTVI-LDGVRYNSLPGFFNR-KAAEQS 62
>pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
The First Dsrbd Of Protein Hyl1
Length = 103
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 52 PPAELAEELTTHQSKLQVPVIDLDGIRYNQLEDIVDQVRAASQT 95
P E+ +E +H+S Q VI LDG+RYN L ++ +AA Q+
Sbjct: 35 PVYEIVKEGPSHKSLFQSTVI-LDGVRYNSLPGFFNR-KAAEQS 76
>pdb|3P4G|A Chain A, X-Ray Crystal Structure Of A Hyperactive, Ca2+-Dependent,
Beta-Helical Antifreeze Protein From An Antarctic
Bacterium
pdb|3P4G|B Chain B, X-Ray Crystal Structure Of A Hyperactive, Ca2+-Dependent,
Beta-Helical Antifreeze Protein From An Antarctic
Bacterium
pdb|3P4G|C Chain C, X-Ray Crystal Structure Of A Hyperactive, Ca2+-Dependent,
Beta-Helical Antifreeze Protein From An Antarctic
Bacterium
pdb|3P4G|D Chain D, X-Ray Crystal Structure Of A Hyperactive, Ca2+-Dependent,
Beta-Helical Antifreeze Protein From An Antarctic
Bacterium
Length = 323
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 87 DQVRAASQTWGFFQV-INHGVPLNLIQEMIEGVHKFNEQDVEVKKQFYTRERTRNVRFNS 145
D VR SQ W + + G + +++ + G NE D + +FYT+E ++N+
Sbjct: 238 DIVRVQSQVWAEANISLGTGDDVLIVEHELHGTVAGNEGDDSIYLKFYTKE-----QYNN 292
Query: 146 NFDLYHSRTASWR 158
N DL +R A++
Sbjct: 293 NSDL-RNRVANFE 304
>pdb|2PI7|A Chain A, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
pdb|2PI7|B Chain B, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
Length = 312
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 11/123 (8%)
Query: 186 EYIKEVSKLGETLFEILSMALGLKPEYLKDMG-CFNLYSVIC-HYYPHCPQP----ELT- 238
EYI L ET + M L K + + + C V C HY+P P ++T
Sbjct: 102 EYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWPFTEDPIAYGDITV 161
Query: 239 --LGARTHSDPSF--LTILLQDQIGGLQVFNENQWIDVNPISGGLVVNIGDFLQVVSNDE 294
L H+D + I D++ + FN W D + +I F+Q+V
Sbjct: 162 EMLSEEEHTDWVYRNFRISYADEVQDVMHFNYTAWPDHGVPTANAAESILQFVQMVRQKS 221
Query: 295 LKS 297
+KS
Sbjct: 222 VKS 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,876,023
Number of Sequences: 62578
Number of extensions: 444025
Number of successful extensions: 1121
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1097
Number of HSP's gapped (non-prelim): 17
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)