Query 017337
Match_columns 373
No_of_seqs 211 out of 665
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:41:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1507 Nucleosome assembly pr 100.0 2.4E-91 5.3E-96 678.4 19.2 296 1-300 1-343 (358)
2 PTZ00007 (NAP-L) nucleosome as 100.0 2.8E-75 6.1E-80 573.8 23.7 249 40-301 28-284 (337)
3 PF00956 NAP: Nucleosome assem 100.0 3.5E-61 7.6E-66 456.9 16.2 239 52-296 1-244 (244)
4 PTZ00008 (NAP-S) nucleosome as 100.0 7.5E-55 1.6E-59 398.8 14.0 180 67-300 2-184 (185)
5 KOG1508 DNA replication factor 100.0 2.2E-28 4.8E-33 234.9 9.6 203 43-298 22-225 (260)
6 PF06524 NOA36: NOA36 protein; 93.1 0.072 1.6E-06 51.8 3.0 6 203-208 187-192 (314)
7 PF11629 Mst1_SARAH: C termina 93.0 0.34 7.3E-06 35.7 5.6 36 58-93 10-45 (49)
8 PF04931 DNA_pol_phi: DNA poly 92.5 0.077 1.7E-06 58.9 2.6 19 53-71 341-359 (784)
9 PF03066 Nucleoplasmin: Nucleo 88.5 0.14 2.9E-06 46.0 0.0 23 170-192 17-41 (149)
10 KOG1189 Global transcriptional 83.4 2.6 5.7E-05 46.7 6.5 108 55-174 694-808 (960)
11 PHA02608 67 prohead core prote 78.8 1.2 2.7E-05 35.8 1.6 6 275-280 38-43 (80)
12 PF07352 Phage_Mu_Gam: Bacteri 74.5 14 0.00031 32.6 7.5 49 51-99 5-53 (149)
13 KOG3064 RNA-binding nuclear pr 74.5 2 4.4E-05 42.0 2.1 54 46-99 71-128 (303)
14 KOG1832 HIV-1 Vpr-binding prot 74.5 1.6 3.5E-05 49.1 1.6 8 149-156 1219-1226(1516)
15 KOG0943 Predicted ubiquitin-pr 66.4 3.7 8.1E-05 47.8 2.2 17 76-92 1443-1459(3015)
16 KOG1832 HIV-1 Vpr-binding prot 65.1 3.4 7.4E-05 46.7 1.6 7 179-185 1246-1252(1516)
17 PF07195 FliD_C: Flagellar hoo 61.6 43 0.00093 31.8 8.3 62 22-86 169-230 (239)
18 PRK06798 fliD flagellar cappin 56.2 41 0.0009 35.2 7.7 75 5-85 330-415 (440)
19 PF07361 Cytochrom_B562: Cytoc 55.5 13 0.00027 31.3 3.1 42 47-88 51-103 (103)
20 PTZ00415 transmission-blocking 54.6 8.1 0.00018 46.6 2.3 8 211-218 84-91 (2849)
21 COG4396 Mu-like prophage host- 53.6 36 0.00078 30.6 5.7 50 49-98 18-67 (170)
22 PTZ00415 transmission-blocking 52.8 7.4 0.00016 46.9 1.6 7 284-290 131-137 (2849)
23 PF14389 Lzipper-MIP1: Leucine 51.7 51 0.0011 26.9 6.0 61 23-94 28-88 (88)
24 PF04871 Uso1_p115_C: Uso1 / p 47.7 14 0.00031 32.6 2.3 7 293-299 110-116 (136)
25 KOG2038 CAATT-binding transcri 44.0 14 0.00031 41.3 2.1 10 173-182 692-701 (988)
26 PF03115 Astro_capsid: Astrovi 43.1 8 0.00017 43.4 0.0 7 241-247 588-594 (787)
27 PRK08032 fliD flagellar cappin 42.7 74 0.0016 33.5 7.1 56 24-83 385-440 (462)
28 PF07516 SecA_SW: SecA Wing an 41.6 88 0.0019 29.1 6.8 46 56-101 9-54 (214)
29 PF03344 Daxx: Daxx Family; I 40.8 9.1 0.0002 42.6 0.0 14 21-34 85-98 (713)
30 PRK11546 zraP zinc resistance 40.6 76 0.0017 28.5 5.8 35 38-82 35-69 (143)
31 PF12998 ING: Inhibitor of gro 39.9 60 0.0013 26.3 4.8 27 42-68 8-34 (105)
32 smart00502 BBC B-Box C-termina 39.4 1.2E+02 0.0027 24.5 6.7 55 45-99 10-64 (127)
33 PF15290 Syntaphilin: Golgi-lo 38.3 89 0.0019 31.2 6.3 20 141-160 139-158 (305)
34 PF03938 OmpH: Outer membrane 35.3 1.5E+02 0.0033 25.7 7.0 50 46-98 72-122 (158)
35 PF14197 Cep57_CLD_2: Centroso 33.8 1.5E+02 0.0033 23.2 5.9 58 24-82 5-62 (69)
36 PF00611 FCH: Fes/CIP4, and EF 33.7 1.5E+02 0.0033 22.9 6.0 30 70-99 29-58 (91)
37 PF07106 TBPIP: Tat binding pr 33.6 1.9E+02 0.004 25.9 7.3 24 74-98 145-168 (169)
38 PRK06664 fliD flagellar hook-a 32.7 1.5E+02 0.0032 32.9 7.7 57 24-84 579-635 (661)
39 PF11333 DUF3135: Protein of u 32.3 2.4E+02 0.0052 22.9 7.0 44 20-72 14-57 (83)
40 cd00179 SynN Syntaxin N-termin 32.2 3.1E+02 0.0066 23.5 8.3 40 62-101 87-129 (151)
41 KOG3647 Predicted coiled-coil 32.1 2E+02 0.0043 28.7 7.6 23 46-68 137-159 (338)
42 PF03344 Daxx: Daxx Family; I 31.5 16 0.00034 40.7 0.0 7 242-248 348-354 (713)
43 KOG2038 CAATT-binding transcri 30.1 31 0.00067 38.8 1.9 8 241-248 804-812 (988)
44 PF10417 1-cysPrx_C: C-termina 29.9 15 0.00032 25.7 -0.4 15 201-215 9-23 (40)
45 KOG0574 STE20-like serine/thre 29.3 64 0.0014 33.0 3.8 37 57-93 455-491 (502)
46 smart00055 FCH Fes/CIP4 homolo 28.8 2.8E+02 0.006 21.5 6.8 24 70-93 29-52 (87)
47 COG3883 Uncharacterized protei 27.9 2.1E+02 0.0046 28.3 7.0 22 123-144 114-135 (265)
48 PF05086 Dicty_REP: Dictyostel 27.4 29 0.00062 38.9 1.1 15 169-183 687-701 (911)
49 PF06464 DMAP_binding: DMAP1-b 27.4 95 0.0021 26.4 4.1 39 44-85 2-43 (111)
50 PF05764 YL1: YL1 nuclear prot 27.1 51 0.0011 31.7 2.6 6 301-306 40-45 (240)
51 PTZ00007 (NAP-L) nucleosome as 27.1 62 0.0014 32.9 3.4 30 59-88 58-87 (337)
52 PRK15422 septal ring assembly 26.2 2.2E+02 0.0047 23.2 5.6 33 40-72 2-34 (79)
53 KOG3540 Beta amyloid precursor 26.0 56 0.0012 34.9 2.8 19 277-295 164-184 (615)
54 KOG1189 Global transcriptional 25.8 54 0.0012 36.9 2.8 17 54-70 567-583 (960)
55 PRK08724 fliD flagellar cappin 24.9 3.2E+02 0.007 30.5 8.5 20 24-44 596-615 (673)
56 KOG4484 Uncharacterized conser 24.3 3.6E+02 0.0077 25.2 7.3 48 17-67 18-66 (199)
57 PF05600 DUF773: Protein of un 23.7 1.6E+02 0.0035 31.5 5.9 71 49-139 127-201 (507)
58 PRK01546 hypothetical protein; 22.2 1.2E+02 0.0026 24.6 3.5 44 47-91 2-45 (79)
59 KOG3958 Putative dynamitin [Cy 21.6 3.3E+02 0.0071 27.7 7.0 72 22-98 241-342 (371)
60 COG0497 RecN ATPase involved i 21.6 4E+02 0.0086 29.1 8.3 78 20-98 293-373 (557)
61 KOG3241 Uncharacterized conser 21.5 66 0.0014 30.2 2.1 19 74-93 49-67 (227)
62 KOG1991 Nuclear transport rece 21.0 56 0.0012 37.6 1.8 18 20-37 495-512 (1010)
63 PRK02539 hypothetical protein; 20.8 1.4E+02 0.0031 24.5 3.7 44 48-92 2-45 (85)
64 PF05086 Dicty_REP: Dictyostel 20.7 49 0.0011 37.2 1.3 12 178-189 733-744 (911)
65 PF03896 TRAP_alpha: Transloco 20.5 60 0.0013 32.3 1.7 13 284-296 14-26 (285)
66 PF11705 RNA_pol_3_Rpc31: DNA- 20.5 75 0.0016 30.2 2.4 9 88-96 68-76 (233)
67 KOG0127 Nucleolar protein fibr 20.4 72 0.0016 34.7 2.4 10 127-136 117-126 (678)
68 PRK10780 periplasmic chaperone 20.1 4.4E+02 0.0096 23.5 7.2 18 81-98 112-129 (165)
No 1
>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.4e-91 Score=678.45 Aligned_cols=296 Identities=55% Similarity=0.903 Sum_probs=265.1
Q ss_pred CCCCCCCCchhhhhHh------------------hC------cccchhHHHHHHHHhhhhcCCCchhhhcCCHHHHHHHH
Q 017337 1 MSADKDNFNVTDLRAS------------------LD------EGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVE 56 (373)
Q Consensus 1 ~~~~~~~~~~~~~~~~------------------~~------~~~~~~~~~~l~~~l~~l~~~~~~~ie~Lp~~v~~rv~ 56 (373)
|||.+.+++|+++.++ +. ...++.++++++.||++|+++.+++|++||++||+||.
T Consensus 1 msn~k~s~~~sd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~s~~v~~Lp~~Vk~Rv~ 80 (358)
T KOG1507|consen 1 MSNDKDSGNMSDAPTPHNTPSSASESPADAPSGSLDDESSSDEESTPKLLSALDGRLASLAGLLSDMVENLPPAVKNRVL 80 (358)
T ss_pred CCCccccccccccCCCCCCCcccccccccccccccccccccccccChhhhcccchhhhcccCCCchhhhhcCHHHHHHHH
Confidence 8999999999998765 22 12356699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHhHhcccccCCcccccchhh------------hhhhhhccCC
Q 017337 57 VLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQE------------EDKATEEKGV 124 (373)
Q Consensus 57 aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy~kR~eII~G~~e~~~~E~~~~~~------------~~~~~~~kgI 124 (373)
|||+||.++..|+++|++++++||+||+++|+|||+||++||+|.++|+++++++... ......++||
T Consensus 81 aLk~lQ~~~~~ie~~F~~e~~~LE~ky~~~yqplfdkR~eIi~g~~EP~eee~e~~~~~~de~~~~e~~~~~~~~d~KGI 160 (358)
T KOG1507|consen 81 ALKNLQLECDEIEAKFQEEVHELERKYAKLYQPLFDKRREIINGEVEPTEEEIEWPEEIEDEGNLAEDTEEAEKEDPKGI 160 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhCCccCcccccccccccccccccccchhhhccccccCC
Confidence 9999999999999999999999999999999999999999999999999777654211 1123467999
Q ss_pred CccHHHHHhhchhhhhccchhhHHhhccccccEEEEeCCC-CceEEEEEeCCCCCccCceEEEEEEec---CCCCc----
Q 017337 125 PDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDP-KGFKLEFYFDPNPYFKNSVLTKTYHMI---DEDEP---- 196 (373)
Q Consensus 125 P~FWltaL~n~~~ls~~I~e~De~iLk~L~DI~ve~~ed~-~gFkL~F~F~~NpYF~N~vLtK~y~~~---~~~dp---- 196 (373)
|+||||||+|+++|++||+++|++||+||+||++.+..++ .||+|+|||+|||||+|+||||||+|+ +..+|
T Consensus 161 P~FWLtvlkNvd~lse~I~~~DEpiLk~L~DI~~~~~~~~~~~fklEFhFd~N~YFtN~vLTKTY~l~~~~D~~~P~~~~ 240 (358)
T KOG1507|consen 161 PDFWLTVLKNVDLLSEMITERDEPILKYLKDIRLKYSEDGQVGFKLEFHFDPNPYFTNEVLTKTYFLKSEPDEDDPFAFD 240 (358)
T ss_pred chHHHHHHhhhhhhhhhcccccHHHHHHHhhhheeeccCCccceEEEEEcCCCccccccceeeeeeeeccCCCcCCcccC
Confidence 9999999999999999999999999999999999999877 699999999999999999999999998 55556
Q ss_pred --ceecceeeeeeecCCCCcchhhhhccCC-CCCCCCcccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhcc
Q 017337 197 --ILEKAIGTEIEWYPGKCLTQKLLKKKPK-KGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQD 273 (373)
Q Consensus 197 --~~~~~~gt~I~WK~GKnlT~k~~kKk~k-kg~k~~r~v~k~~~~~SFFnFFs~~~~p~d~~~~dee~~eel~~~l~~D 273 (373)
.+++|+||.|+|++|||||+++++|||| ||++++|+|+|+++++||||||+||.+| +.++.|++.. +++|+.|
T Consensus 241 G~~i~~~~Gc~IdW~~gknlT~kti~kKq~~k~~~~~r~vtk~vp~eSFFNFFsPP~ip-d~~d~Ded~~---~~~L~~D 316 (358)
T KOG1507|consen 241 GPEIEKCEGCEIDWKPGKNLTVKTIKKKQRNKGTGQVRTVTKTVPNESFFNFFSPPEIP-DEEDLDEDDL---EELLELD 316 (358)
T ss_pred CceEEeeecCeeeccCCCccchhhhhhhccccCCCceeeeeecccchhhhhccCCCCCC-cccccCchHH---HHHHHhh
Confidence 6899999999999999999999888875 7889999999999999999999999999 4444444332 7899999
Q ss_pred ccccccccccccccchhhccccccccc
Q 017337 274 YDIGSTIRDKIIPHAVSWFTGEAIQEE 300 (373)
Q Consensus 274 ~eIg~~ikd~IiP~AV~yFtGea~~~e 300 (373)
|+||++||++|||+||.||||+|++++
T Consensus 317 yeIG~~lr~~IIPrAV~~fTGea~e~~ 343 (358)
T KOG1507|consen 317 YEIGETLRDKIIPRAVLWFTGEALEDE 343 (358)
T ss_pred HHHHHHHHhhhhhheeeeecccccccc
Confidence 999999999999999999999996543
No 2
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=100.00 E-value=2.8e-75 Score=573.83 Aligned_cols=249 Identities=45% Similarity=0.762 Sum_probs=226.9
Q ss_pred CchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHhHhcccccCCcccccchhhhhhhh
Q 017337 40 HSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKAT 119 (373)
Q Consensus 40 ~~~~ie~Lp~~v~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy~kR~eII~G~~e~~~~E~~~~~~~~~~~ 119 (373)
.+++|.+||+.|++||.+|+.||.++..|+++|++++++||++|+++|+|||++|++||+|..++. .
T Consensus 28 ~~~~i~~Lp~~~~~rv~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII~G~~~~e-------------~ 94 (337)
T PTZ00007 28 DDEKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALVQNGGAE-------------I 94 (337)
T ss_pred ccchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCcccc-------------c
Confidence 678999999999999999999999999999999999999999999999999999999999964321 2
Q ss_pred hccCCCccHHHHHhhchhhhhccchhhHHhhccccccEEEEeCCC--CceEEEEEeCCCCCccCceEEEEEEecC---CC
Q 017337 120 EEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDP--KGFKLEFYFDPNPYFKNSVLTKTYHMID---ED 194 (373)
Q Consensus 120 ~~kgIP~FWltaL~n~~~ls~~I~e~De~iLk~L~DI~ve~~ed~--~gFkL~F~F~~NpYF~N~vLtK~y~~~~---~~ 194 (373)
.++|||+||++||+||+.|+.+|+++|++||+||+||+|+++... +||+|+|+|.+||||+|++|||+|+|.. .+
T Consensus 95 ~~~gIP~FWl~vL~Nh~~ls~~I~e~De~iL~~L~dI~ve~~~~~~~~gf~I~F~F~~NpyF~N~vLtK~y~~~~~d~~~ 174 (337)
T PTZ00007 95 GTPGLPQFWLTAMKNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGFILVFTFAPNPFFSNTVLTKTYHMKVLDGDD 174 (337)
T ss_pred ccCCcccHHHHHHHcCccHhhhCCHHHHHHHHhhCceEEEEccCCCCCceEEEEEeCCCCCCCCCeEEEEEEeecCCCCC
Confidence 357999999999999999999999999999999999999987653 6999999999999999999999999964 23
Q ss_pred CcceecceeeeeeecCCCCcchhhhhccCC-CCCCCCcccccccccccccccccccCCCCCCC--CCChhHHHHHHHhhh
Q 017337 195 EPILEKAIGTEIEWYPGKCLTQKLLKKKPK-KGSKNAKPITKTEECESFFNFFNPPQVPEDDE--DIDEDTAEELQNQME 271 (373)
Q Consensus 195 dp~~~~~~gt~I~WK~GKnlT~k~~kKk~k-kg~k~~r~v~k~~~~~SFFnFFs~~~~p~d~~--~~dee~~eel~~~l~ 271 (373)
.|++.+++||+|+||+|||||+++++|||| |+++.+|+|+++++++||||||+||.+|..++ .+++++.++++++|+
T Consensus 175 ~p~~~~~~~t~I~WK~GkdlT~k~v~kKqr~K~~~~~r~v~~~~~~~SFFnfF~p~~~p~~~~~e~~~e~~~ee~~~~l~ 254 (337)
T PTZ00007 175 EPLLSNTVATEIDWKQGKDVTKKVVTKKQRHKKTKETRTVTETVDRESFFNFFTSHEVPSDEELEKMSKHEIAELEMIVE 254 (337)
T ss_pred CceeecceeeeceeeCCCCchhhhcccccccccCCCceeeccCCCCCChHHhcCCCCCCcccccccccchhHHHHHHHHH
Confidence 577789999999999999999999998877 56778899999999999999999999987653 345566788999999
Q ss_pred ccccccccccccccccchhhcccccccccc
Q 017337 272 QDYDIGSTIRDKIIPHAVSWFTGEAIQEEE 301 (373)
Q Consensus 272 ~D~eIg~~ikd~IiP~AV~yFtGea~~~ed 301 (373)
.||+||++||++|||+||.||||+|+++++
T Consensus 255 ~DyeiG~~ikd~IIP~AV~yftGea~d~~~ 284 (337)
T PTZ00007 255 TDYEIGITIRDKLIPYAVYWFLGEAIDEDS 284 (337)
T ss_pred HhHHHHHHHHHhcccccHHhhCCCcccccc
Confidence 999999999999999999999999998765
No 3
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=100.00 E-value=3.5e-61 Score=456.86 Aligned_cols=239 Identities=48% Similarity=0.862 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHhHhcccccCCcccccchhhhhhhhhccCCCccHHHH
Q 017337 52 RKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTA 131 (373)
Q Consensus 52 ~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy~kR~eII~G~~e~~~~E~~~~~~~~~~~~~kgIP~FWlta 131 (373)
|+||.+|+.||.++..|+.+|.+++++|+++|+++++|||++|++||+|.++++. ...... ... .++|||+||++|
T Consensus 1 ~~~i~~L~~~q~~~~~l~~~~~~e~~~le~ky~~~~~pl~~kR~~ii~g~~~~~~--~~~~~~-~~~-~~~gIP~FW~~v 76 (244)
T PF00956_consen 1 KQRIEALKKLQEELDELEKEFEEEIHELERKYNKLYKPLYEKRREIINGKREPTE--IEWEER-QEE-KPKGIPGFWLTV 76 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS---H--HHH------S-SSTTSTTHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccccc--ccccch-hhc-cccCCCCccccc
Confidence 6799999999999999999999999999999999999999999999999887764 111100 001 268999999999
Q ss_pred HhhchhhhhccchhhHHhhccccccEEEEeCC-CCceEEEEEeCCCCCccCceEEEEEEecCCCC---cceecceeeeee
Q 017337 132 MKNNDVLSEEITERDEGALKFLKDIKWFRIDD-PKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDE---PILEKAIGTEIE 207 (373)
Q Consensus 132 L~n~~~ls~~I~e~De~iLk~L~DI~ve~~ed-~~gFkL~F~F~~NpYF~N~vLtK~y~~~~~~d---p~~~~~~gt~I~ 207 (373)
|+||+.++.+|+++|.+||+||+||+|++... +.||+|+|+|++||||+|++|||+|+|...++ |...++++|+|+
T Consensus 77 l~n~~~~~~~i~~~D~~iL~~L~dI~v~~~~~~~~~f~l~F~F~~NpyF~n~~L~K~~~~~~~~~~~~~~~~~~~~t~I~ 156 (244)
T PF00956_consen 77 LKNHPLLAELISEEDEEILSYLTDIRVEYFEDNPRGFKLTFHFKPNPYFSNTVLTKEYYLKKEGDEEDPDELKSESTPID 156 (244)
T ss_dssp HHTSHHHHTTSSHHHHHHHTTEEEEEEEECCSSTTEEEEEEEECSTSSBSESEEEEEEEEESSSSTTTT-EEEEEE---E
T ss_pred cccCchhhcccccccHHHHHhhhheEEEecccCCcceEEEEEECCCCcccCCEEEEEEEEeccCCCCCCCcceeeeeccc
Confidence 99999999999999999999999999999877 67999999999999999999999999987654 211589999999
Q ss_pred ecCCCCcchhhhhccCC-CCCCCCcccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhccccccccccccccc
Q 017337 208 WYPGKCLTQKLLKKKPK-KGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIP 286 (373)
Q Consensus 208 WK~GKnlT~k~~kKk~k-kg~k~~r~v~k~~~~~SFFnFFs~~~~p~d~~~~dee~~eel~~~l~~D~eIg~~ikd~IiP 286 (373)
||+|+|+|++++++|++ ++++.+|++++.++.+|||+||+|+.+|+++++.+ +.++.+..+..||+||.+|+++|||
T Consensus 157 Wk~gkd~t~~~~~~k~~~k~~~~~~~~~~~~~~~SFF~~F~~~~~~~~~~~e~--~~~~~~~~~~~d~ei~~~i~d~i~P 234 (244)
T PF00956_consen 157 WKPGKDLTKKEVKKKQKNKGTKQVRTITKEVPTESFFNFFSPPKLPDEEDDEE--EDEDEEEEIEDDFEIGEIIKDDIIP 234 (244)
T ss_dssp BSTTTCTTCCCCECECCSCCCH-ECCCCCCCC--SGGGGSS-B-S--TTTSSS--TCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred ccCCCCccchhhhhcccccccccccceeecccCcchhhhcccCCCCccccccc--chhhHHHHhhccHHHHHHHHhheec
Confidence 99999999999887765 56778899999999999999999998886554332 2234567899999999999999999
Q ss_pred cchhhccccc
Q 017337 287 HAVSWFTGEA 296 (373)
Q Consensus 287 ~AV~yFtGea 296 (373)
+||.||||+|
T Consensus 235 ~av~yy~gea 244 (244)
T PF00956_consen 235 NAVKYYTGEA 244 (244)
T ss_dssp HHHHHHHTCT
T ss_pred hHHHHhCCCC
Confidence 9999999997
No 4
>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional
Probab=100.00 E-value=7.5e-55 Score=398.82 Aligned_cols=180 Identities=22% Similarity=0.425 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHhHhcccccCCcccccchhhhhhhhhccCCCccHHHHHhhchhhhhccchhh
Q 017337 67 ELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERD 146 (373)
Q Consensus 67 ~le~kf~~E~~~LE~Ky~k~~~PLy~kR~eII~G~~e~~~~E~~~~~~~~~~~~~kgIP~FWltaL~n~~~ls~~I~e~D 146 (373)
+|+.+|.+++++|+++|+++++|||++|++|| +|||+||++||+||+.++ +|+++|
T Consensus 2 ~l~~e~~~e~~~le~ky~~~~~p~y~kR~~II-----------------------~gIP~FW~~vl~n~~~~~-~I~~~D 57 (185)
T PTZ00008 2 ELDEECAKEQMNIQRQFDEKKKPLFEKRQEII-----------------------EKIPGFWADTLRRHPALS-YLVPED 57 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH-----------------------hcCccHHHHHHHcCcccc-ccCHHH
Confidence 47889999999999999999999999999999 799999999999999999 999999
Q ss_pred HHhhccccccEEEE-eCCCCceEEEEEeCC--CCCccCceEEEEEEecCCCCcceecceeeeeeecCCCCcchhhhhccC
Q 017337 147 EGALKFLKDIKWFR-IDDPKGFKLEFYFDP--NPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLKKKP 223 (373)
Q Consensus 147 e~iLk~L~DI~ve~-~ed~~gFkL~F~F~~--NpYF~N~vLtK~y~~~~~~dp~~~~~~gt~I~WK~GKnlT~k~~kKk~ 223 (373)
++||+||+||+|+. .+++.||+|+|+|++ ||||+|++|||+|++..+++. .+++|+|+||+|+|||+++++|+
T Consensus 58 ~~~L~~L~dI~ve~~~~~~~~f~i~F~F~~~~N~yF~n~~LtK~y~~~~~~~~---~~~~t~I~Wk~gkn~t~~~~kk~- 133 (185)
T PTZ00008 58 IDILEHLKKIDLEDNLDNNGSYKITLIFDEKAKEFMEPLVLVKHVIFKNNQEK---VVEVTKIKWKEGKSPIAAAEKAR- 133 (185)
T ss_pred HHHHHHhCceEEEEeecCCCCEEEEEEECCCCCCCcCCCEEEEEEEEecCCCc---eeeeeecccCCCCCcceeeeecc-
Confidence 99999999999997 456679999999975 899999999999999765543 46899999999999999876522
Q ss_pred CCCCCCCcccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhccccccccccccccccchhhccccccccc
Q 017337 224 KKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEE 300 (373)
Q Consensus 224 kkg~k~~r~v~k~~~~~SFFnFFs~~~~p~d~~~~dee~~eel~~~l~~D~eIg~~ikd~IiP~AV~yFtGea~~~e 300 (373)
+ ++++++++.||||||+++..| .+|+||++|+++|||+||.||||++++++
T Consensus 134 --~-----~~~~~~~~~SFF~fF~~~~~~-------------------~~~eIg~~i~e~i~P~av~yy~ge~~~~~ 184 (185)
T PTZ00008 134 --S-----DLDDECIVWSIFEWFTEEEWQ-------------------DRPDVGEIIRREIWHAPLLYYLDTVSIDD 184 (185)
T ss_pred --C-----ccccCCCCCChhhcCCCCccc-------------------CcHHHHHHHHHhhccchHHhhCCcccccc
Confidence 1 456778999999999987433 35789999999999999999999988764
No 5
>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]
Probab=99.95 E-value=2.2e-28 Score=234.87 Aligned_cols=203 Identities=32% Similarity=0.577 Sum_probs=175.3
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHhHhcccccCCcccccchhhhhhhhhcc
Q 017337 43 VLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEK 122 (373)
Q Consensus 43 ~ie~Lp~~v~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy~kR~eII~G~~e~~~~E~~~~~~~~~~~~~k 122 (373)
.+..-...+...+..|.+||.+++.++++..++++.|+++|....+|+|.+|+.|| +
T Consensus 22 ~l~~~~~~~~~~~~~l~~i~~e~~~~~~~a~~~~l~l~~~~~~~r~p~~~~r~~ii-----------------------~ 78 (260)
T KOG1508|consen 22 HLSRRGREIEEALETLENIQHELDRMNAKAEVEVLKLEQKFNRFRRPVYEKRRELI-----------------------K 78 (260)
T ss_pred ccccchhHHHhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhCchhhhhhHHH-----------------------h
Confidence 34556778889999999999999999999999999999999999999999999999 7
Q ss_pred CCCccHHHHHhhchhhhhccchhhHHhhccccccEEEEeCCCC-ceEEEEEeCCCCCccCceEEEEEEecCCCCcceecc
Q 017337 123 GVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPK-GFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKA 201 (373)
Q Consensus 123 gIP~FWltaL~n~~~ls~~I~e~De~iLk~L~DI~ve~~ed~~-gFkL~F~F~~NpYF~N~vLtK~y~~~~~~dp~~~~~ 201 (373)
.||+||.+++.||+.++.+|..+|..+|.||..+.|..+.+.. ||++.|+|.+|+||+|.+++|.|++...+.+ .+
T Consensus 79 ~i~~fw~~~~~~hp~~~~~i~~~~~e~~~~l~~~~v~e~~~~~sg~~~~~~f~~ney~~~~~~~ke~~~~~~~~~---~s 155 (260)
T KOG1508|consen 79 EIPNFWVTAFLNHPTLSEWIPEEDEEALHYLHNLEVEELGDIKSGYRIKFSFEINEYFTNDLLVKEFQYKESGKP---SS 155 (260)
T ss_pred hcccceeEEEecCCcHhhhhhhhhhhhhccchHHHHHHhccccccCeeeeeeccchhcccchhceeeeeecccCc---cc
Confidence 8999999999999999999999999999999999999887655 9999999999999999999999999888775 47
Q ss_pred eeeeeeecCCCCcchhhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhcccccccccc
Q 017337 202 IGTEIEWYPGKCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIR 281 (373)
Q Consensus 202 ~gt~I~WK~GKnlT~k~~kKk~kkg~k~~r~v~k~~~~~SFFnFFs~~~~p~d~~~~dee~~eel~~~l~~D~eIg~~ik 281 (373)
.+|+|.|+.|+.+......- ..+.++ ...+.|||.||+....++. | +|+..|+
T Consensus 156 ~~t~i~w~~~~~~~~~~~~~--~~~~k~------~~~~~s~f~wf~~~~~~~~------------------d-~i~ei~~ 208 (260)
T KOG1508|consen 156 ESTPISWKEGKPLPNPVKRG--ELKNKN------GDGPKSFFEWFSDTSLKEF------------------D-EILEIIK 208 (260)
T ss_pred ccccccccCCCCCccccccc--cccccc------CcccccHHHHHHhccCCCc------------------c-chhhhhh
Confidence 89999999999887654311 001111 2357899999999877651 1 6899999
Q ss_pred ccccccchhhccccccc
Q 017337 282 DKIIPHAVSWFTGEAIQ 298 (373)
Q Consensus 282 d~IiP~AV~yFtGea~~ 298 (373)
+.+||+++.||+-....
T Consensus 209 ~~~~~~~~~~~~~~~~~ 225 (260)
T KOG1508|consen 209 DELWPNPLQYYLEPDGE 225 (260)
T ss_pred cccccchhhhhcccccc
Confidence 99999999999854433
No 6
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=93.14 E-value=0.072 Score=51.80 Aligned_cols=6 Identities=17% Similarity=0.241 Sum_probs=2.3
Q ss_pred eeeeee
Q 017337 203 GTEIEW 208 (373)
Q Consensus 203 gt~I~W 208 (373)
-|+|-+
T Consensus 187 RCK~cf 192 (314)
T PF06524_consen 187 RCKICF 192 (314)
T ss_pred heeeee
Confidence 334433
No 7
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=92.99 E-value=0.34 Score=35.68 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Q 017337 58 LREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTK 93 (373)
Q Consensus 58 Lk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy~k 93 (373)
+..||..+..|...+..|+.+|.+.|+.+.+||.+.
T Consensus 10 ~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIldA 45 (49)
T PF11629_consen 10 YEELQQRLASLDPEMEQEIEELRQRYQAKRQPILDA 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHHHH
Confidence 456788888999999999999999999999999875
No 8
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=92.54 E-value=0.077 Score=58.94 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 017337 53 KRVEVLREIQSEHDELEAK 71 (373)
Q Consensus 53 ~rv~aLk~lQ~e~~~le~k 71 (373)
.++.-++.++.-...+..+
T Consensus 341 d~~t~~k~i~~il~~~~~~ 359 (784)
T PF04931_consen 341 DQITKTKTIEQILLSLDVD 359 (784)
T ss_pred HHHHHHHHHHHHHhccchH
Confidence 3344455544444444333
No 9
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=88.52 E-value=0.14 Score=46.01 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=11.0
Q ss_pred EEEeCC--CCCccCceEEEEEEecC
Q 017337 170 EFYFDP--NPYFKNSVLTKTYHMID 192 (373)
Q Consensus 170 ~F~F~~--NpYF~N~vLtK~y~~~~ 192 (373)
.++|.+ |.--.....-++..+..
T Consensus 17 ~~~f~~~~~d~~~h~L~L~~v~Lga 41 (149)
T PF03066_consen 17 DYTFKVDDNDENEHQLSLRQVCLGA 41 (149)
T ss_dssp EEEE-TTSSSSSCEEEEEEEEEE-T
T ss_pred eEEEeCCCCCCcccEEEEEEeecCC
Confidence 467777 44334444445666643
No 10
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=83.36 E-value=2.6 Score=46.67 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=54.9
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHhHhcccccCCcccccchhhhhhhhhccCCCccHHHHH
Q 017337 55 VEVLREIQS--EHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAM 132 (373)
Q Consensus 55 v~aLk~lQ~--e~~~le~kf~~E~~~LE~Ky~k~~~PLy~kR~eII~G~~e~~~~E~~~~~~~~~~~~~kgIP~FWltaL 132 (373)
+..|-.-+. ..++|..+-. -...+++.+..++-+-.+-.+.-++..+... +-..-.-.|+|.= .+||
T Consensus 694 v~dlg~~~~~~D~del~~EQ~--Er~rr~~ln~~FksF~~kv~~~~~~~~efd~--------pfr~lGF~GvP~r-ssv~ 762 (960)
T KOG1189|consen 694 VTDLGKRRRMGDRDELEQEQE--ERDRRAKLNMAFKSFAEKVAEATESELEFDV--------PFRELGFNGVPFR-SSVF 762 (960)
T ss_pred HHhhccCccccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhccceeecc--------chhhcCcCCCCcc-ceee
Confidence 444544444 3444433332 2333445555555555555555544443220 0001123466643 2333
Q ss_pred hhchhhhhccchhhHHhh-ccccccEEEEeC----CCCceEEEEEeC
Q 017337 133 KNNDVLSEEITERDEGAL-KFLKDIKWFRID----DPKGFKLEFYFD 174 (373)
Q Consensus 133 ~n~~~ls~~I~e~De~iL-k~L~DI~ve~~e----d~~gFkL~F~F~ 174 (373)
. .|.-+++++-.+.|.| -.|.+|.+..++ ..+.|-+.|.|+
T Consensus 763 i-~pTs~cLV~LtE~P~~VvtL~eVEiv~~ERV~f~lKnfDmvfIfK 808 (960)
T KOG1189|consen 763 I-QPTSSCLVNLTEWPFFVVTLEEVEIVNLERVQFGLKNFDMVFIFK 808 (960)
T ss_pred e-ecchhhhhccccCCceEEeecceeeeeeeeeeeccccceEEEEec
Confidence 2 2445666665666655 578888887654 346888999984
No 11
>PHA02608 67 prohead core protein; Provisional
Probab=78.77 E-value=1.2 Score=35.77 Aligned_cols=6 Identities=17% Similarity=0.645 Sum_probs=2.6
Q ss_pred cccccc
Q 017337 275 DIGSTI 280 (373)
Q Consensus 275 eIg~~i 280 (373)
+|++.|
T Consensus 38 eIA~sv 43 (80)
T PHA02608 38 EIARSV 43 (80)
T ss_pred HHHHHH
Confidence 444443
No 12
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=74.54 E-value=14 Score=32.64 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHhHhc
Q 017337 51 VRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVN 99 (373)
Q Consensus 51 v~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy~kR~eII~ 99 (373)
+-..+..|..||.++..+++.+..++.++..+|.....||-.+...+-.
T Consensus 5 a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~ 53 (149)
T PF07352_consen 5 ADWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEG 53 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456888999999999999999999999999999999999988887764
No 13
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=74.47 E-value=2 Score=41.96 Aligned_cols=54 Identities=9% Similarity=0.161 Sum_probs=37.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhchhHHHHHhHhc
Q 017337 46 KLTPAVRKRVEVLREIQSEHDELEAKF----FEERAALEAKYQKLYQPMYTKRYEIVN 99 (373)
Q Consensus 46 ~Lp~~v~~rv~aLk~lQ~e~~~le~kf----~~E~~~LE~Ky~k~~~PLy~kR~eII~ 99 (373)
++|...-.||.-=++...-+..|...+ ..-+|.+.+++-++.|=|..-|+--+.
T Consensus 71 H~P~klwErikLSkNyekALeQIde~Ll~Wp~~~~HKcKQRltklTQylir~rklalr 128 (303)
T KOG3064|consen 71 HMPRKLWERIKLSKNYEKALEQIDEQLLYWPKYVIHKCKQRLTKLTQYLIRMRKLALR 128 (303)
T ss_pred cCcHHHHHHHhcchhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577777777765555555555555544 235678888888888888877776665
No 14
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=74.46 E-value=1.6 Score=49.15 Aligned_cols=8 Identities=25% Similarity=0.443 Sum_probs=4.3
Q ss_pred hhcccccc
Q 017337 149 ALKFLKDI 156 (373)
Q Consensus 149 iLk~L~DI 156 (373)
++.||+++
T Consensus 1219 l~tylt~~ 1226 (1516)
T KOG1832|consen 1219 LQTYLTDT 1226 (1516)
T ss_pred HHHhcCcc
Confidence 34556655
No 15
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=66.37 E-value=3.7 Score=47.78 Aligned_cols=17 Identities=29% Similarity=0.239 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhchhHH
Q 017337 76 RAALEAKYQKLYQPMYT 92 (373)
Q Consensus 76 ~~~LE~Ky~k~~~PLy~ 92 (373)
+.+|+.+|.+.|..||.
T Consensus 1443 ~falenkiLkd~Sslfv 1459 (3015)
T KOG0943|consen 1443 LFALENKILKDQSSLFV 1459 (3015)
T ss_pred hHHHHHHHHhhhhhhhh
Confidence 45667777766666653
No 16
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=65.06 E-value=3.4 Score=46.73 Aligned_cols=7 Identities=29% Similarity=0.444 Sum_probs=4.0
Q ss_pred ccCceEE
Q 017337 179 FKNSVLT 185 (373)
Q Consensus 179 F~N~vLt 185 (373)
|.|.+||
T Consensus 1246 lndGvLW 1252 (1516)
T KOG1832|consen 1246 LNDGVLW 1252 (1516)
T ss_pred eeCceee
Confidence 4555665
No 17
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=61.64 E-value=43 Score=31.78 Aligned_cols=62 Identities=10% Similarity=0.327 Sum_probs=39.0
Q ss_pred chhHHHHHHHHhhhhcCCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017337 22 RADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKL 86 (373)
Q Consensus 22 ~~~~~~~l~~~l~~l~~~~~~~ie~Lp~~v~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~ 86 (373)
..++...|..-|..+.+...+.|...-.....+ ++.|+.++..++.++......|..+|.++
T Consensus 169 ~~Gi~~~l~~~l~~~~~~~~G~i~~~~~~l~~~---~~~~~~~i~~~~~rl~~~~~~l~~qf~~m 230 (239)
T PF07195_consen 169 TSGIATRLNDYLDSYTGSSTGSITSRIDSLNSQ---IKSLDKQIEDLEERLESKEERLRKQFSAM 230 (239)
T ss_pred cccHHHHHHHHHHHHhCCCCcchhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777776657666555555433 55566677777767666666666666544
No 18
>PRK06798 fliD flagellar capping protein; Validated
Probab=56.24 E-value=41 Score=35.23 Aligned_cols=75 Identities=12% Similarity=0.284 Sum_probs=39.9
Q ss_pred CCCCchhhhhHhhCcccchhHHHH-----------HHHHhhhhcCCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017337 5 KDNFNVTDLRASLDEGARADLVGV-----------LKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFF 73 (373)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~l~~l~~~~~~~ie~Lp~~v~~rv~aLk~lQ~e~~~le~kf~ 73 (373)
+-.+|-..|..||. .||.-|.. |...|..+.+ ..+.|..--..+ -..++.|+.++..++.++.
T Consensus 330 ~L~lD~~kL~~al~--~np~~V~~lF~g~~Gia~~l~~~l~~~~~-~~G~i~~r~~~l---~~~i~~l~~~~~~~e~rl~ 403 (440)
T PRK06798 330 TMKVDEEALKKALK--ENPDAAKQFFFGINGLGKEMEKSLDKIFG-DEGIIGERSKSI---DNRVSKLDLKITDIDTQNK 403 (440)
T ss_pred CEEEcHHHHHHHHH--HCHHHHHHHhcCCCcHHHHHHHHHHhhhC-CCceeehhhhHH---HHHHHHHHHHHHHHHHHHH
Confidence 34456666777766 35555554 4666666665 344433322222 2334556666666666665
Q ss_pred HHHHHHHHHHHH
Q 017337 74 EERAALEAKYQK 85 (373)
Q Consensus 74 ~E~~~LE~Ky~k 85 (373)
.....|.++|.+
T Consensus 404 ~~e~~l~~qf~a 415 (440)
T PRK06798 404 QKQDNIVDKYQK 415 (440)
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 19
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=55.53 E-value=13 Score=31.27 Aligned_cols=42 Identities=21% Similarity=0.295 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhc
Q 017337 47 LTPAVRKRVEVLREIQSEHDELEAKF-----------FEERAALEAKYQKLYQ 88 (373)
Q Consensus 47 Lp~~v~~rv~aLk~lQ~e~~~le~kf-----------~~E~~~LE~Ky~k~~~ 88 (373)
-.+.+..-...|..|+.+++.++... .+++..|+.+|+++|+
T Consensus 51 d~~~~~~Y~~Gl~~li~~id~a~~~~~~G~l~~AK~~l~~l~~lR~eyHkk~r 103 (103)
T PF07361_consen 51 DSAEVKDYQEGLDKLIDQIDKAEALAEAGKLDEAKAALKKLDDLRKEYHKKFR 103 (103)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhHhcC
Confidence 34555567888899998888877644 4577888888888774
No 20
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=54.60 E-value=8.1 Score=46.58 Aligned_cols=8 Identities=38% Similarity=0.472 Sum_probs=4.3
Q ss_pred CCCcchhh
Q 017337 211 GKCLTQKL 218 (373)
Q Consensus 211 GKnlT~k~ 218 (373)
|++-.+++
T Consensus 84 ~~~~~~~~ 91 (2849)
T PTZ00415 84 GKDTSVKI 91 (2849)
T ss_pred ccccccce
Confidence 56655553
No 21
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=53.65 E-value=36 Score=30.60 Aligned_cols=50 Identities=20% Similarity=0.360 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHhHh
Q 017337 49 PAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIV 98 (373)
Q Consensus 49 ~~v~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy~kR~eII 98 (373)
.+|..-|..|-.||.++..|+.++..++.+++..|..+..||-..-..+-
T Consensus 18 eeV~~~Ir~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~ 67 (170)
T COG4396 18 EEVTAFIRQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLT 67 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHH
Confidence 35677789999999999999999999999999999999999877655554
No 22
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=52.85 E-value=7.4 Score=46.91 Aligned_cols=7 Identities=29% Similarity=0.311 Sum_probs=3.1
Q ss_pred ccccchh
Q 017337 284 IIPHAVS 290 (373)
Q Consensus 284 IiP~AV~ 290 (373)
|||+-+.
T Consensus 131 i~~~~~~ 137 (2849)
T PTZ00415 131 IIKRRRA 137 (2849)
T ss_pred EeehHHh
Confidence 3554443
No 23
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=51.73 E-value=51 Score=26.93 Aligned_cols=61 Identities=25% Similarity=0.376 Sum_probs=35.9
Q ss_pred hhHHHHHHHHhhhhcCCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Q 017337 23 ADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKR 94 (373)
Q Consensus 23 ~~~~~~l~~~l~~l~~~~~~~ie~Lp~~v~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy~kR 94 (373)
-.+-.+|..-|+.-.|..+..-..||+.++.-|..+..+..+ |..||.+-..+|.-+|.+|
T Consensus 28 ~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~e-----------V~~LE~~v~~L~~~l~~q~ 88 (88)
T PF14389_consen 28 QDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAE-----------VAKLEQKVLSLYRQLFQQR 88 (88)
T ss_pred HHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhcC
Confidence 345555555555555544343468898887766666554444 4555666666666666554
No 24
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=47.69 E-value=14 Score=32.57 Aligned_cols=7 Identities=29% Similarity=0.710 Sum_probs=3.3
Q ss_pred ccccccc
Q 017337 293 TGEAIQE 299 (373)
Q Consensus 293 tGea~~~ 299 (373)
+|+.+.+
T Consensus 110 LG~eVSd 116 (136)
T PF04871_consen 110 LGEEVSD 116 (136)
T ss_pred cCCCccC
Confidence 3554543
No 25
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=44.03 E-value=14 Score=41.28 Aligned_cols=10 Identities=40% Similarity=0.564 Sum_probs=7.0
Q ss_pred eCCCCCccCc
Q 017337 173 FDPNPYFKNS 182 (373)
Q Consensus 173 F~~NpYF~N~ 182 (373)
++-||-|.|.
T Consensus 692 r~R~P~f~nA 701 (988)
T KOG2038|consen 692 RKRNPLFCNA 701 (988)
T ss_pred ccCCccccCC
Confidence 3568888775
No 26
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=43.09 E-value=8 Score=43.41 Aligned_cols=7 Identities=0% Similarity=-0.078 Sum_probs=3.1
Q ss_pred ccccccc
Q 017337 241 SFFNFFN 247 (373)
Q Consensus 241 SFFnFFs 247 (373)
.+|.+|.
T Consensus 588 YLl~st~ 594 (787)
T PF03115_consen 588 YLLQSTT 594 (787)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 3444443
No 27
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=42.73 E-value=74 Score=33.47 Aligned_cols=56 Identities=11% Similarity=0.264 Sum_probs=28.7
Q ss_pred hHHHHHHHHhhhhcCCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017337 24 DLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKY 83 (373)
Q Consensus 24 ~~~~~l~~~l~~l~~~~~~~ie~Lp~~v~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~Ky 83 (373)
+++..|...|..+.+. .|.|........ ..++.|+.+++.++.++......|.++|
T Consensus 385 G~~~~l~~~l~~~~~~-~G~l~~~~~~l~---~~i~~l~~~i~~~~~rl~~~e~rl~~qF 440 (462)
T PRK08032 385 GITTQIATNLKSWLST-TGIIKTATDGVN---KTLKKLTKQYNAVSDSIDATIARYKAQF 440 (462)
T ss_pred cHHHHHHHHHHHHHcC-CccchhHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566667766663 355443322222 2345556666666655555444444444
No 28
>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner. This domain is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.; GO: 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 2IPC_D 3JUX_A 3DIN_B ....
Probab=41.60 E-value=88 Score=29.08 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHhHhccc
Q 017337 56 EVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGV 101 (373)
Q Consensus 56 ~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy~kR~eII~G~ 101 (373)
.+|...|......+-...+-+++...=-+.++.-+|..|+.|+.|.
T Consensus 9 ~~Ie~aQkkvE~~nf~~Rk~lleyD~Vl~~QR~~IY~~R~~iL~~~ 54 (214)
T PF07516_consen 9 KSIEKAQKKVEGRNFDIRKNLLEYDDVLNQQRKVIYKQRDKILEGE 54 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5788889999988888888888888888889999999999999765
No 29
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=40.78 E-value=9.1 Score=42.56 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=6.1
Q ss_pred cchhHHHHHHHHhh
Q 017337 21 ARADLVGVLKNKLQ 34 (373)
Q Consensus 21 ~~~~~~~~l~~~l~ 34 (373)
+-|.+|..|+.|..
T Consensus 85 d~~evv~~L~~~~~ 98 (713)
T PF03344_consen 85 DMPEVVKFLKRRYE 98 (713)
T ss_dssp T-TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 34445555544443
No 30
>PRK11546 zraP zinc resistance protein; Provisional
Probab=40.59 E-value=76 Score=28.49 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=20.8
Q ss_pred CCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017337 38 GQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAK 82 (373)
Q Consensus 38 ~~~~~~ie~Lp~~v~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~K 82 (373)
|.-..+...|+|+.+..+ +.|..+|+.+...|+.+
T Consensus 35 G~~~~~~~~LT~EQQa~~----------q~I~~~f~~~t~~LRqq 69 (143)
T PRK11546 35 GMWQQNAAPLTTEQQAAW----------QKIHNDFYAQTSALRQQ 69 (143)
T ss_pred CCCccccccCCHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 333457889999986444 34445555555554444
No 31
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=39.94 E-value=60 Score=26.25 Aligned_cols=27 Identities=26% Similarity=0.628 Sum_probs=21.6
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHH
Q 017337 42 DVLEKLTPAVRKRVEVLREIQSEHDEL 68 (373)
Q Consensus 42 ~~ie~Lp~~v~~rv~aLk~lQ~e~~~l 68 (373)
+.+++||.++++.+.-++.+-.++..+
T Consensus 8 d~~~~LP~el~r~l~~irelD~~~~~~ 34 (105)
T PF12998_consen 8 DSLENLPAELQRNLTLIRELDAKSQDL 34 (105)
T ss_dssp TSGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHHHHHHHHhhhhHHHH
Confidence 357899999999999999887775443
No 32
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=39.45 E-value=1.2e+02 Score=24.55 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=43.2
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHhHhc
Q 017337 45 EKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVN 99 (373)
Q Consensus 45 e~Lp~~v~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy~kR~eII~ 99 (373)
..|-+.......++..|...+..++.........+...|..++.-|-.++..++.
T Consensus 10 ~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~ 64 (127)
T smart00502 10 TKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLE 64 (127)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556677888888888888888888888999998888888888888884
No 33
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=38.32 E-value=89 Score=31.17 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=14.5
Q ss_pred ccchhhHHhhccccccEEEE
Q 017337 141 EITERDEGALKFLKDIKWFR 160 (373)
Q Consensus 141 ~I~e~De~iLk~L~DI~ve~ 160 (373)
-+.++|..|=+|..||.+..
T Consensus 139 sL~ekDkGiQKYFvDINiQN 158 (305)
T PF15290_consen 139 SLAEKDKGIQKYFVDINIQN 158 (305)
T ss_pred hhchhhhhHHHHHhhhhhhH
Confidence 34577888888888887753
No 34
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=35.33 E-value=1.5e+02 Score=25.71 Aligned_cols=50 Identities=30% Similarity=0.385 Sum_probs=29.5
Q ss_pred cCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHhHh
Q 017337 46 KLTPAVR-KRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIV 98 (373)
Q Consensus 46 ~Lp~~v~-~rv~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy~kR~eII 98 (373)
+|+++.+ .+.. .||.....+..........|....+..+.|++.+-..+|
T Consensus 72 ~ls~~~~~~~~~---~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i~~~v 122 (158)
T PF03938_consen 72 TLSEEERQKRQQ---ELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKINKAV 122 (158)
T ss_dssp --SSHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544 3333 344444444444444456677777888889998888887
No 35
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=33.79 E-value=1.5e+02 Score=23.20 Aligned_cols=58 Identities=24% Similarity=0.259 Sum_probs=35.0
Q ss_pred hHHHHHHHHhhhhcCCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017337 24 DLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAK 82 (373)
Q Consensus 24 ~~~~~l~~~l~~l~~~~~~~ie~Lp~~v~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~K 82 (373)
..+++|+++|+.+....+.+-..+-.=.+.|=.++..|+..+..+. ++..++-.|.++
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~-~Lk~E~e~L~~e 62 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENN-KLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3578899999998876554422222223355566666666666553 555566666655
No 36
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=33.68 E-value=1.5e+02 Score=22.89 Aligned_cols=30 Identities=40% Similarity=0.547 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHhHhc
Q 017337 70 AKFFEERAALEAKYQKLYQPMYTKRYEIVN 99 (373)
Q Consensus 70 ~kf~~E~~~LE~Ky~k~~~PLy~kR~eII~ 99 (373)
..|.+++..||..|.+.+.-|..+=.....
T Consensus 29 ~~~~keRa~lE~~Yak~L~kl~~~~~~~~~ 58 (91)
T PF00611_consen 29 ASFFKERASLEEEYAKSLQKLAKKFKKKMK 58 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 368888899999998888888777666663
No 37
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=33.60 E-value=1.9e+02 Score=25.89 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhchhHHHHHhHh
Q 017337 74 EERAALEAKYQKLYQPMYTKRYEIV 98 (373)
Q Consensus 74 ~E~~~LE~Ky~k~~~PLy~kR~eII 98 (373)
.++..++..| ..+.-.|.+|+.|.
T Consensus 145 ee~~~~~~~~-~~~~k~w~kRKri~ 168 (169)
T PF07106_consen 145 EEKEKLEKEY-KKWRKEWKKRKRIC 168 (169)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 4677777776 56677888888775
No 38
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=32.68 E-value=1.5e+02 Score=32.94 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=26.8
Q ss_pred hHHHHHHHHhhhhcCCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017337 24 DLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQ 84 (373)
Q Consensus 24 ~~~~~l~~~l~~l~~~~~~~ie~Lp~~v~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~ 84 (373)
++...|...|..+.+ ..|.|..--..+ =..|+.|+.++..++.++......|.++|.
T Consensus 579 Gla~~l~~~l~~~t~-~~G~i~~r~~~l---~~~i~~l~~~i~~~e~rl~~~e~rl~~QFt 635 (661)
T PRK06664 579 GVAKMLLEYLSPYTQ-AGGIIYNKVKGL---DERIADNNKKIEEYEKKLESKERKLKGKYL 635 (661)
T ss_pred cHHHHHHHHHHHHHc-CCCceehHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555544 334332221222 223445666666666665555555555554
No 39
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=32.28 E-value=2.4e+02 Score=22.94 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=29.7
Q ss_pred ccchhHHHHHHHHhhhhcCCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017337 20 GARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKF 72 (373)
Q Consensus 20 ~~~~~~~~~l~~~l~~l~~~~~~~ie~Lp~~v~~rv~aLk~lQ~e~~~le~kf 72 (373)
..+|.-+.+|+.++- .+.|++.|+..+.| |+.+|..++..-...
T Consensus 14 ~~dPe~fe~lr~~~~------ee~I~~a~~~~q~r---L~~lQ~~Id~~~~~~ 57 (83)
T PF11333_consen 14 QNDPEAFEQLRQELI------EEMIESAPEEMQPR---LRALQFHIDMQRSRC 57 (83)
T ss_pred HhCHHHHHHHHHHHH------HHHHHhCCHHHHHH---HHHHHHHHHHHHHHc
Confidence 468877777766543 34689999999988 455566666554443
No 40
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=32.18 E-value=3.1e+02 Score=23.49 Aligned_cols=40 Identities=30% Similarity=0.522 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhchhHHHHHhHhccc
Q 017337 62 QSEHDELEAKFFE---ERAALEAKYQKLYQPMYTKRYEIVNGV 101 (373)
Q Consensus 62 Q~e~~~le~kf~~---E~~~LE~Ky~k~~~PLy~kR~eII~G~ 101 (373)
..++..|..+|.. +...++.+|...++-...++..||++.
T Consensus 87 ~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i~~~~ 129 (151)
T cd00179 87 KTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEITGGE 129 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3445556665544 556788899999999999999999754
No 41
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=32.09 E-value=2e+02 Score=28.73 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=11.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHH
Q 017337 46 KLTPAVRKRVEVLREIQSEHDEL 68 (373)
Q Consensus 46 ~Lp~~v~~rv~aLk~lQ~e~~~l 68 (373)
.|..++.+|-..|..+++.+..|
T Consensus 137 ~L~~Kierrk~ElEr~rkRle~L 159 (338)
T KOG3647|consen 137 ALGSKIERRKAELERTRKRLEAL 159 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555545555555554444
No 42
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=31.52 E-value=16 Score=40.74 Aligned_cols=7 Identities=14% Similarity=0.083 Sum_probs=0.0
Q ss_pred ccccccc
Q 017337 242 FFNFFNP 248 (373)
Q Consensus 242 FFnFFs~ 248 (373)
|=.+|..
T Consensus 348 ~~~~lt~ 354 (713)
T PF03344_consen 348 FGCHLTD 354 (713)
T ss_dssp -------
T ss_pred ccccccc
Confidence 4444433
No 43
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=30.06 E-value=31 Score=38.79 Aligned_cols=8 Identities=25% Similarity=1.024 Sum_probs=4.6
Q ss_pred cccc-cccc
Q 017337 241 SFFN-FFNP 248 (373)
Q Consensus 241 SFFn-FFs~ 248 (373)
-||. ||+.
T Consensus 804 ~fFhry~~~ 812 (988)
T KOG2038|consen 804 LFFHRYYSS 812 (988)
T ss_pred HHHHHHhhh
Confidence 3555 7764
No 44
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=29.94 E-value=15 Score=25.75 Aligned_cols=15 Identities=27% Similarity=0.689 Sum_probs=12.2
Q ss_pred ceeeeeeecCCCCcc
Q 017337 201 AIGTEIEWYPGKCLT 215 (373)
Q Consensus 201 ~~gt~I~WK~GKnlT 215 (373)
-..|+.+|++|.++-
T Consensus 9 ~v~tPanW~pGd~~i 23 (40)
T PF10417_consen 9 GVATPANWKPGDDVI 23 (40)
T ss_dssp SSBBCTTTCTTSGEB
T ss_pred CcccCcCCCCCCCeE
Confidence 458999999998764
No 45
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=29.28 E-value=64 Score=33.02 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Q 017337 57 VLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTK 93 (373)
Q Consensus 57 aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy~k 93 (373)
.|..||..+-.|.-.+.+++.+|.++|..+.+|||+.
T Consensus 455 ~~e~Lq~rl~alDpmme~eieelrq~y~skrqpIlda 491 (502)
T KOG0574|consen 455 TLEELQMRLKALDPMMEREIEELRQRYTSKRQPILDA 491 (502)
T ss_pred cHHHHHHHHHhcCHHHHHHHHHHHHHHhhccccHHHH
Confidence 4778888888888889999999999999999999975
No 46
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=28.83 E-value=2.8e+02 Score=21.48 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHH
Q 017337 70 AKFFEERAALEAKYQKLYQPMYTK 93 (373)
Q Consensus 70 ~kf~~E~~~LE~Ky~k~~~PLy~k 93 (373)
..|.+++.++|..|.+.+.-|..+
T Consensus 29 ~~f~~~Ra~iE~eYak~L~kL~~~ 52 (87)
T smart00055 29 KKFIRERAKIEEEYAKKLQKLSKK 52 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478899999999999999988776
No 47
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.94 E-value=2.1e+02 Score=28.28 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=16.9
Q ss_pred CCCccHHHHHhhchhhhhccch
Q 017337 123 GVPDFWLTAMKNNDVLSEEITE 144 (373)
Q Consensus 123 gIP~FWltaL~n~~~ls~~I~e 144 (373)
|=-.+++.|+.++..|+++|+.
T Consensus 114 G~~t~Yidvil~SkSfsD~IsR 135 (265)
T COG3883 114 GTATSYIDVILNSKSFSDLISR 135 (265)
T ss_pred CChhHHHHHHHccCcHHHHHHH
Confidence 3355689999999888888763
No 48
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=27.45 E-value=29 Score=38.92 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=8.4
Q ss_pred EEEEeCCCCCccCce
Q 017337 169 LEFYFDPNPYFKNSV 183 (373)
Q Consensus 169 L~F~F~~NpYF~N~v 183 (373)
+..+|.-|+|=-|.|
T Consensus 687 ~~Is~tn~~yn~~~v 701 (911)
T PF05086_consen 687 LNISITNTAYNANRV 701 (911)
T ss_pred EEEEEecccccceee
Confidence 555666666654444
No 49
>PF06464 DMAP_binding: DMAP1-binding Domain; InterPro: IPR010506 This domain binds DMAP1, a transcriptional co-repressor.; GO: 0008134 transcription factor binding, 0005634 nucleus
Probab=27.42 E-value=95 Score=26.37 Aligned_cols=39 Identities=31% Similarity=0.509 Sum_probs=25.4
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHH
Q 017337 44 LEKLTPAVRKRVEVLREIQSEHDE--L-EAKFFEERAALEAKYQK 85 (373)
Q Consensus 44 ie~Lp~~v~~rv~aLk~lQ~e~~~--l-e~kf~~E~~~LE~Ky~k 85 (373)
+..||++||.+ |+.|..++.. | +.-|.+++.+|=..|..
T Consensus 2 ~s~LP~evq~~---L~~L~~el~~GdiT~KGY~kkr~~LL~~yl~ 43 (111)
T PF06464_consen 2 PSSLPPEVQNR---LQELDLELEEGDITQKGYEKKRSKLLAPYLP 43 (111)
T ss_pred cccCCHHHHHH---HHHHHHhhhcCcchHHHHHHHHHHHHHHHHh
Confidence 35799999976 4555555544 3 44566677777777653
No 50
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.14 E-value=51 Score=31.69 Aligned_cols=6 Identities=17% Similarity=-0.114 Sum_probs=2.2
Q ss_pred cccCCC
Q 017337 301 EIELDD 306 (373)
Q Consensus 301 d~~d~~ 306 (373)
+++++.
T Consensus 40 ~D~ef~ 45 (240)
T PF05764_consen 40 DDEEFE 45 (240)
T ss_pred CCcccc
Confidence 333333
No 51
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=27.09 E-value=62 Score=32.93 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017337 59 REIQSEHDELEAKFFEERAALEAKYQKLYQ 88 (373)
Q Consensus 59 k~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~ 88 (373)
+.++.++..|+.+|.+....|-.+-..+..
T Consensus 58 ~ef~~ev~~LE~kY~~~~~Ply~kR~eII~ 87 (337)
T PTZ00007 58 VEYNAELRKLRSKYEDLYNPIYDKRKEALV 87 (337)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHc
Confidence 445666667777776666665555554443
No 52
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=26.18 E-value=2.2e+02 Score=23.19 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=27.8
Q ss_pred CchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017337 40 HSDVLEKLTPAVRKRVEVLREIQSEHDELEAKF 72 (373)
Q Consensus 40 ~~~~ie~Lp~~v~~rv~aLk~lQ~e~~~le~kf 72 (373)
|-+.++.|-.+|+..|+.+.-||.++.+|..+-
T Consensus 2 S~EvleqLE~KIqqAvdtI~LLqmEieELKekn 34 (79)
T PRK15422 2 SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKN 34 (79)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999987653
No 53
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=26.01 E-value=56 Score=34.94 Aligned_cols=19 Identities=21% Similarity=0.567 Sum_probs=13.5
Q ss_pred cccccc--cccccchhhcccc
Q 017337 277 GSTIRD--KIIPHAVSWFTGE 295 (373)
Q Consensus 277 g~~ikd--~IiP~AV~yFtGe 295 (373)
|.+|+. -+.|-++.-|+|.
T Consensus 164 ~mil~~~gmLlPCg~D~F~Gv 184 (615)
T KOG3540|consen 164 GMILHSYGMLLPCGLDMFRGV 184 (615)
T ss_pred CeeeecccceeccccccccCc
Confidence 444433 4789999999994
No 54
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=25.84 E-value=54 Score=36.90 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017337 54 RVEVLREIQSEHDELEA 70 (373)
Q Consensus 54 rv~aLk~lQ~e~~~le~ 70 (373)
+...++.||.+....++
T Consensus 567 ~f~~ik~l~k~~~~re~ 583 (960)
T KOG1189|consen 567 AFRQIKELQKRFKSREA 583 (960)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444555555544443
No 55
>PRK08724 fliD flagellar capping protein; Validated
Probab=24.90 E-value=3.2e+02 Score=30.49 Aligned_cols=20 Identities=10% Similarity=0.363 Sum_probs=11.3
Q ss_pred hHHHHHHHHhhhhcCCCchhh
Q 017337 24 DLVGVLKNKLQNLAGQHSDVL 44 (373)
Q Consensus 24 ~~~~~l~~~l~~l~~~~~~~i 44 (373)
+|...|...|..+.+ ..|.|
T Consensus 596 GlA~rL~~~L~~~~~-t~G~I 615 (673)
T PRK08724 596 GFAKRVEDAIQSMTG-VTGSI 615 (673)
T ss_pred hHHHHHHHHHHHHhc-cCCch
Confidence 444455677777665 34443
No 56
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.30 E-value=3.6e+02 Score=25.19 Aligned_cols=48 Identities=19% Similarity=0.365 Sum_probs=29.3
Q ss_pred hCcccchhHHHHHHHHhhhhcCCCchhhhcCCHHHHH-HHHHHHHHHHHHHH
Q 017337 17 LDEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRK-RVEVLREIQSEHDE 67 (373)
Q Consensus 17 ~~~~~~~~~~~~l~~~l~~l~~~~~~~ie~Lp~~v~~-rv~aLk~lQ~e~~~ 67 (373)
|.....|+.. .|++++.++-..-.. ..|||+|+. ...+|..|+.+++.
T Consensus 18 m~~~k~pgts-~iK~qiRd~eRlLkk--~~LP~~Vr~e~er~L~~Lk~ql~~ 66 (199)
T KOG4484|consen 18 MRVEKKPGTS-SIKNQIRDLERLLKK--KDLPPEVREELERKLQDLKKQLDN 66 (199)
T ss_pred cchhcCCchH-HHHHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4444555543 467776665432111 589999984 45677777777664
No 57
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=23.66 E-value=1.6e+02 Score=31.51 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH----HHHhHhcccccCCcccccchhhhhhhhhccCC
Q 017337 49 PAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYT----KRYEIVNGVVEGAPNEVAMDQEEDKATEEKGV 124 (373)
Q Consensus 49 ~~v~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy~----kR~eII~G~~e~~~~E~~~~~~~~~~~~~kgI 124 (373)
|.+++.|..+...+.++.+-+.++.+-...++.+|.+.++-+=- -|.+|+ ..++.+
T Consensus 127 P~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~G~nir~ELl--------------------~l~~~L 186 (507)
T PF05600_consen 127 PALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGIKGENIREELL--------------------ELVKEL 186 (507)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHH--------------------HHHHhh
Confidence 56788899999999999999999999999999999887765521 233443 124788
Q ss_pred CccHHHHHhhchhhh
Q 017337 125 PDFWLTAMKNNDVLS 139 (373)
Q Consensus 125 P~FWltaL~n~~~ls 139 (373)
|.++..+......|.
T Consensus 187 P~~~~~i~~~i~~l~ 201 (507)
T PF05600_consen 187 PSLFDEIVEAISDLQ 201 (507)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999887776554333
No 58
>PRK01546 hypothetical protein; Provisional
Probab=22.20 E-value=1.2e+02 Score=24.61 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH
Q 017337 47 LTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMY 91 (373)
Q Consensus 47 Lp~~v~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy 91 (373)
++..+..||..|.+.+.. ..|...=..|...|+..|-..++--+
T Consensus 2 ~~~~~i~RINeLakK~K~-~gLT~eEk~Eq~~LR~eYl~~fR~~~ 45 (79)
T PRK01546 2 LSHELVERINFLAKKAKA-EGLTEEEQRERQSLREQYLKGFRQNM 45 (79)
T ss_pred CcHHHHHHHHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788899999998886 55655666788899999977665544
No 59
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=21.63 E-value=3.3e+02 Score=27.67 Aligned_cols=72 Identities=13% Similarity=0.268 Sum_probs=42.8
Q ss_pred chhHHHHHHHHhhhhcCCCchh------------------------------hhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017337 22 RADLVGVLKNKLQNLAGQHSDV------------------------------LEKLTPAVRKRVEVLREIQSEHDELEAK 71 (373)
Q Consensus 22 ~~~~~~~l~~~l~~l~~~~~~~------------------------------ie~Lp~~v~~rv~aLk~lQ~e~~~le~k 71 (373)
++..+..+..||++++|.-... .++|| .+-+|+.+|+.|+.+-. +
T Consensus 241 ~~~~ld~vEqRL~s~lgK~~~IaEk~~~s~~Da~~d~KV~elye~~qrw~pi~stLP-~~V~rl~al~~LHeqa~----~ 315 (371)
T KOG3958|consen 241 DLAVLDQVEQRLQSVLGKVNEIAEKHKASVEDADTDSKVHELYETIQRWSPIASTLP-ELVQRLVALKQLHEQAM----Q 315 (371)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHhhhhHHHhhH-HHHHHHHHHHHHHHHHH----H
Confidence 4566677777777777642221 22344 44468888888876643 4
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHhHh
Q 017337 72 FFEERAALEAKYQKLYQPMYTKRYEIV 98 (373)
Q Consensus 72 f~~E~~~LE~Ky~k~~~PLy~kR~eII 98 (373)
|..-+..|+..-..+-+.|-+-|.-|+
T Consensus 316 Fa~~lthl~t~q~~i~~sl~~n~ell~ 342 (371)
T KOG3958|consen 316 FAQLLTHLDTTQQMIANSLKDNTELLT 342 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 666666666666655555555554444
No 60
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=21.57 E-value=4e+02 Score=29.14 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=46.9
Q ss_pred ccchhHHHHHHHHhhhhcCCCchh---hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHh
Q 017337 20 GARADLVGVLKNKLQNLAGQHSDV---LEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYE 96 (373)
Q Consensus 20 ~~~~~~~~~l~~~l~~l~~~~~~~---ie~Lp~~v~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy~kR~e 96 (373)
.-+|.-+..+..||..|-+..-.| ++.|+.-..+....|..|...-..+ ..+..++..+..+|.+.-+-|-..|..
T Consensus 293 e~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~-~~Le~~~~~l~~~~~~~A~~Ls~~R~~ 371 (557)
T COG0497 293 EFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESL-EALEKEVKKLKAELLEAAEALSAIRKK 371 (557)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888887777665544433 3444433333333333333322222 245667778888888888888888887
Q ss_pred Hh
Q 017337 97 IV 98 (373)
Q Consensus 97 II 98 (373)
.-
T Consensus 372 ~A 373 (557)
T COG0497 372 AA 373 (557)
T ss_pred HH
Confidence 76
No 61
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.53 E-value=66 Score=30.16 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhchhHHH
Q 017337 74 EERAALEAKYQKLYQPMYTK 93 (373)
Q Consensus 74 ~E~~~LE~Ky~k~~~PLy~k 93 (373)
+|..+-.+|| .+|+||...
T Consensus 49 kEqieWk~KY-~KYKpLt~a 67 (227)
T KOG3241|consen 49 KEQIEWKRKY-GKYKPLTEA 67 (227)
T ss_pred HHHHHHHHHh-ccccccchh
Confidence 4555566777 678887643
No 62
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.98 E-value=56 Score=37.59 Aligned_cols=18 Identities=17% Similarity=0.076 Sum_probs=9.0
Q ss_pred ccchhHHHHHHHHhhhhc
Q 017337 20 GARADLVGVLKNKLQNLA 37 (373)
Q Consensus 20 ~~~~~~~~~l~~~l~~l~ 37 (373)
.++-.+..|+......|.
T Consensus 495 ~d~~~l~~ale~t~~~l~ 512 (1010)
T KOG1991|consen 495 KDPNNLSEALELTHNCLL 512 (1010)
T ss_pred CChHHHHHHHHHHHHHhc
Confidence 344445555555555444
No 63
>PRK02539 hypothetical protein; Provisional
Probab=20.80 E-value=1.4e+02 Score=24.51 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH
Q 017337 48 TPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYT 92 (373)
Q Consensus 48 p~~v~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy~ 92 (373)
+.++..||..|...+.. ..|..+=..|..+|++.|-+.++--+.
T Consensus 2 ~~~~I~RINeLakK~K~-~gLT~eEk~Eq~~LR~eYl~~fR~~~~ 45 (85)
T PRK02539 2 DPKKIARINELAKKKKT-EGLTGEEKVEQAKLREEYIEGYRRSVR 45 (85)
T ss_pred CHHHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999988886 555556667888899999776655443
No 64
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=20.71 E-value=49 Score=37.16 Aligned_cols=12 Identities=8% Similarity=0.503 Sum_probs=5.1
Q ss_pred CccCceEEEEEE
Q 017337 178 YFKNSVLTKTYH 189 (373)
Q Consensus 178 YF~N~vLtK~y~ 189 (373)
||-.+-+-+-|+
T Consensus 733 Y~g~Tr~IrafF 744 (911)
T PF05086_consen 733 YMGKTRVIRAFF 744 (911)
T ss_pred HcCCceEEEEEe
Confidence 444444444443
No 65
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=20.55 E-value=60 Score=32.29 Aligned_cols=13 Identities=23% Similarity=0.531 Sum_probs=8.9
Q ss_pred ccccchhhccccc
Q 017337 284 IIPHAVSWFTGEA 296 (373)
Q Consensus 284 IiP~AV~yFtGea 296 (373)
++|-+|..|-|..
T Consensus 14 ~~p~~l~~~~~~~ 26 (285)
T PF03896_consen 14 VFPATLLSFGGGS 26 (285)
T ss_pred HHHHHHHccCCCC
Confidence 5777888777633
No 66
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=20.54 E-value=75 Score=30.17 Aligned_cols=9 Identities=33% Similarity=0.641 Sum_probs=4.2
Q ss_pred chhHHHHHh
Q 017337 88 QPMYTKRYE 96 (373)
Q Consensus 88 ~PLy~kR~e 96 (373)
-|+|-....
T Consensus 68 sPyy~~~~~ 76 (233)
T PF11705_consen 68 SPYYTESRS 76 (233)
T ss_pred CCCcccccc
Confidence 455544443
No 67
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=20.45 E-value=72 Score=34.66 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=5.1
Q ss_pred cHHHHHhhch
Q 017337 127 FWLTAMKNND 136 (373)
Q Consensus 127 FWltaL~n~~ 136 (373)
=|.-+++|.|
T Consensus 117 k~rLIIRNLP 126 (678)
T KOG0127|consen 117 KWRLIIRNLP 126 (678)
T ss_pred cceEEeecCC
Confidence 3555555544
No 68
>PRK10780 periplasmic chaperone; Provisional
Probab=20.14 E-value=4.4e+02 Score=23.46 Aligned_cols=18 Identities=11% Similarity=0.071 Sum_probs=8.9
Q ss_pred HHHHHHhchhHHHHHhHh
Q 017337 81 AKYQKLYQPMYTKRYEIV 98 (373)
Q Consensus 81 ~Ky~k~~~PLy~kR~eII 98 (373)
.+.+.+.+||+.+-...|
T Consensus 112 ~~~~e~~~~i~~ki~~ai 129 (165)
T PRK10780 112 RRSNEERNKILTRIQTAV 129 (165)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555554444
Done!