Query 017337
Match_columns 373
No_of_seqs 211 out of 665
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 12:48:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017337.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017337hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayu_A Nucleosome assembly pro 100.0 1.1E-89 3.8E-94 692.5 11.9 280 20-301 61-369 (417)
2 3fs3_A Nucleosome assembly pro 100.0 1.1E-73 3.7E-78 564.3 17.8 266 24-302 20-299 (359)
3 2e50_A Protein SET; histone ch 100.0 3.2E-60 1.1E-64 445.0 16.5 208 36-293 13-221 (225)
4 2zd7_A VPS75, vacuolar protein 100.0 3E-61 1E-65 461.6 9.2 204 56-300 9-224 (264)
5 3kyp_A Pfnaps, nucleosome asse 100.0 9.5E-57 3.3E-61 412.7 11.0 188 55-296 2-192 (193)
6 2jo8_A Serine/threonine-protei 92.5 0.45 1.5E-05 34.4 6.8 44 41-93 4-47 (51)
7 2ca6_A RAN GTPase-activating p 91.0 0.053 1.8E-06 52.0 0.7 10 129-138 180-189 (386)
8 2ayu_A Nucleosome assembly pro 85.7 0.17 5.9E-06 51.0 0.3 57 25-82 77-134 (417)
9 4fp9_B Mterf domain-containing 72.2 0.77 2.6E-05 44.8 0.0 8 240-247 242-249 (335)
10 2zd7_A VPS75, vacuolar protein 69.1 1.2 4.1E-05 42.1 0.6 43 49-91 9-51 (264)
11 2p2u_A HOST-nuclease inhibitor 66.4 18 0.00062 31.7 7.7 49 51-99 18-66 (171)
12 2ke4_A CDC42-interacting prote 46.8 27 0.00092 28.1 4.9 32 42-78 6-37 (98)
13 4afl_A P29ING4, inhibitor of g 34.2 52 0.0018 26.0 4.8 30 42-71 11-40 (104)
14 2jee_A YIIU; FTSZ, septum, coi 34.2 1.3E+02 0.0046 23.3 6.9 33 40-72 4-36 (81)
15 2eln_A Zinc finger protein 406 29.4 21 0.00073 23.0 1.4 12 361-372 3-14 (38)
16 3g9g_A Suppressor of yeast pro 27.7 1.2E+02 0.0041 28.7 6.8 46 44-93 36-86 (287)
17 2zqm_A Prefoldin beta subunit 26.8 1.2E+02 0.0043 23.7 5.9 29 45-73 2-30 (117)
18 3a7p_A Autophagy protein 16; c 25.4 2.1E+02 0.0073 24.7 7.3 52 44-95 84-138 (152)
19 3bhp_A UPF0291 protein YNZC; N 23.8 82 0.0028 23.2 3.8 42 47-89 2-43 (60)
20 2byk_A Chrac-16; nucleosome sl 22.0 19 0.00065 30.8 0.0 8 283-290 94-101 (140)
21 2lh0_A Histone chaperone RTT10 21.5 55 0.0019 24.9 2.5 24 43-66 8-31 (70)
22 1fv5_A First zinc finger of U- 20.6 38 0.0013 21.7 1.3 12 361-372 2-13 (36)
23 2byk_A Chrac-16; nucleosome sl 20.1 43 0.0015 28.5 1.9 13 235-247 81-93 (140)
No 1
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=100.00 E-value=1.1e-89 Score=692.51 Aligned_cols=280 Identities=37% Similarity=0.678 Sum_probs=236.3
Q ss_pred ccchhHHHHHHHHhhhhcCCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHhHhc
Q 017337 20 GARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVN 99 (373)
Q Consensus 20 ~~~~~~~~~l~~~l~~l~~~~~~~ie~Lp~~v~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy~kR~eII~ 99 (373)
.+||+|+++||+||++|+|++++||++||+.|++||.+|++||.++.+|+++|++++++||+||+++|+|||++|++||+
T Consensus 61 ~~~p~~~~~~~~~l~~l~~~~~~~i~sLp~~v~~rI~aLk~lQ~e~~~le~ef~~ev~eLE~Ky~~~~~PLy~KR~eII~ 140 (417)
T 2ayu_A 61 ANQPLLLQSIQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIIS 140 (417)
T ss_dssp ---------CCSTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHhhccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccccchhh--------------------hhhhhhccCCCccHHHHHhhchhhhhccchhhHHhhccccccEEE
Q 017337 100 GVVEGAPNEVAMDQE--------------------EDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWF 159 (373)
Q Consensus 100 G~~e~~~~E~~~~~~--------------------~~~~~~~kgIP~FWltaL~n~~~ls~~I~e~De~iLk~L~DI~ve 159 (373)
|.++|+.+|+.+... ......++|||+||+|||+||+.|+.||+++|++||+||+||+|+
T Consensus 141 G~~ept~eE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kgIP~FWltalkN~~~lse~I~e~De~iLk~L~DI~Ve 220 (417)
T 2ayu_A 141 GQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLE 220 (417)
T ss_dssp TSSCCCHHHHHHHHHHHHHTTCGGGCCSSCC---------CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECC
T ss_pred CCCCCchhhhcccccccchhhhhhhhhhhhhhcccccccccccCCccHHHHHHHcChHHHHhhhhhhHHHHhhccceEEE
Confidence 999999765542110 111234689999999999999999999999999999999999999
Q ss_pred EeCC-CCceEEEEEe--CCCCCccCceEEEEEEecCC----CCcceecceeeeeeecC-CCCcchhhhhccCC-CCCCCC
Q 017337 160 RIDD-PKGFKLEFYF--DPNPYFKNSVLTKTYHMIDE----DEPILEKAIGTEIEWYP-GKCLTQKLLKKKPK-KGSKNA 230 (373)
Q Consensus 160 ~~ed-~~gFkL~F~F--~~NpYF~N~vLtK~y~~~~~----~dp~~~~~~gt~I~WK~-GKnlT~k~~kKk~k-kg~k~~ 230 (373)
++.+ +.||+|+||| .+||||+|++|||+|+|... |.+++.+++||+|+||+ |||||+++++|||| |+++++
T Consensus 221 ~~~d~~~gF~L~F~F~~~~NpYF~N~vLtKtY~~~~e~~~~g~~~~~~~egt~I~WK~~GknlT~k~~kkKqr~K~~~~~ 300 (417)
T 2ayu_A 221 YLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQV 300 (417)
T ss_dssp BCCSSSCEEEEEEEECTTTCSSBCCSEEEEEEEEESSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC--------
T ss_pred EccCCCcceEEEEEeCCCCCccccCCeEEEEEEEeccCCCCCCcccccccCcceeeecCCCCcchhhhhhcccccCCCcc
Confidence 9875 5699999999 99999999999999999754 34455689999999999 99999999998876 678889
Q ss_pred cccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhccccccccccccccccchhhcccccccccc
Q 017337 231 KPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEE 301 (373)
Q Consensus 231 r~v~k~~~~~SFFnFFs~~~~p~d~~~~dee~~eel~~~l~~D~eIg~~ikd~IiP~AV~yFtGea~~~ed 301 (373)
|+|++++++.||||||+||.+|++++ +++..++++++|+.||+||++||++|||+||.||||+|+++++
T Consensus 301 R~v~k~v~~~SFFnfFspp~~p~~de--de~~~ee~e~~l~~DfeIG~~Ikd~IiP~AV~yftGea~~~e~ 369 (417)
T 2ayu_A 301 RTIEKITPIESFFNFFDPPKIQNEDQ--DEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAALEFEF 369 (417)
T ss_dssp -CCEEEEECCCGGGGGSCSCSCCCTT--SSSTTHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHSHHHHHHH
T ss_pred cccccCCCCCCceeecCCCCCCCccc--cccchHHHHHHHHHHHHHHHHHHhhccccHHHHhccccccccc
Confidence 99999999999999999999998753 2223456889999999999999999999999999999999865
No 2
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=100.00 E-value=1.1e-73 Score=564.26 Aligned_cols=266 Identities=36% Similarity=0.607 Sum_probs=189.4
Q ss_pred hHHHHHHHHhhhhcCCC----chhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHhHhc
Q 017337 24 DLVGVLKNKLQNLAGQH----SDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVN 99 (373)
Q Consensus 24 ~~~~~l~~~l~~l~~~~----~~~ie~Lp~~v~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy~kR~eII~ 99 (373)
.+|.+++..+.+|...+ .++|++||+.|++||.+|+.||.++++|+++|++++++||+||+++|+|||+||++||+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~m~sLp~~v~~rI~aLk~lQ~E~~~le~ef~eEv~~LE~KY~kl~qPLyeKR~eII~ 99 (359)
T 3fs3_A 20 SLLESIKIGKTSLKYRCFYLYDDKMTDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALV 99 (359)
T ss_dssp -------------------------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhhccccchhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHc
Confidence 46777888888999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccccchhhhhhhhhccCCCccHHHHHhhchhhhhccchhhHHhhccccccEEEEeC----CCCceEEEEEeCC
Q 017337 100 GVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRID----DPKGFKLEFYFDP 175 (373)
Q Consensus 100 G~~e~~~~E~~~~~~~~~~~~~kgIP~FWltaL~n~~~ls~~I~e~De~iLk~L~DI~ve~~e----d~~gFkL~F~F~~ 175 (373)
|..+.. ..++|||+||++||+||+.|+.+|+++|++||+||+||+|+++. .+.||+|+|+|.+
T Consensus 100 G~~e~e-------------~~~kgIP~FWltvl~Nhp~ls~~I~e~De~iL~yL~DI~Ve~l~~~~~~~~gfkI~F~F~e 166 (359)
T 3fs3_A 100 GNGEAK-------------IGTPNLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFAT 166 (359)
T ss_dssp C---CC-------------SSSTTSTTHHHHHHHTSHHHHTTCCHHHHHHHTTEEEEEEEECC-------CEEEEEEECS
T ss_pred Cccccc-------------cccCCCCcHHHHHHHhchHHHHhccHhHHHHHhhcceeEEEEeccCCCCCCceEEEEEeCC
Confidence 975421 23479999999999999999999999999999999999999863 4679999999999
Q ss_pred CCCccCceEEEEEEecCC---CCcceecceeeeeeecCCCCcchhhhhccCC-CCCCCCcccccccccccccccccccCC
Q 017337 176 NPYFKNSVLTKTYHMIDE---DEPILEKAIGTEIEWYPGKCLTQKLLKKKPK-KGSKNAKPITKTEECESFFNFFNPPQV 251 (373)
Q Consensus 176 NpYF~N~vLtK~y~~~~~---~dp~~~~~~gt~I~WK~GKnlT~k~~kKk~k-kg~k~~r~v~k~~~~~SFFnFFs~~~~ 251 (373)
||||+|++|||+|+|... ++|++..++||+|+||+|||||+++++|||| |+++.+|+|+++++++||||||+||.+
T Consensus 167 NpYF~N~vLtKey~l~~~~~~~dp~~~~se~t~I~WK~GKdlT~k~~~kKqr~K~t~~~R~v~k~~~~eSFFnfFspp~~ 246 (359)
T 3fs3_A 167 NPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSHKV 246 (359)
T ss_dssp CSSBCCSEEEEEEEEC--------CEEEEEECCCCBCTTCCTTCC----------------------CCCGGGGSCCBCC
T ss_pred CCcccCCEEEEEEEEeccCCCCCcccccceeeeeeEeCCCccchhhhhhhccccCCCCceeeeccCCCCCceeeCCCCCC
Confidence 999999999999999753 4687778999999999999999999888776 667889999999999999999999999
Q ss_pred CCCCC--CCChhHHHHHHHhhhccccccccccccccccchhhccccccccccc
Q 017337 252 PEDDE--DIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEEI 302 (373)
Q Consensus 252 p~d~~--~~dee~~eel~~~l~~D~eIg~~ikd~IiP~AV~yFtGea~~~ed~ 302 (373)
|++++ +++++++++++++|+.||+||++||++|||+||.||||+|+++++.
T Consensus 247 p~~de~~~~de~~~~~~e~~l~~DfeIGe~Ikd~IiP~av~yftGea~e~e~~ 299 (359)
T 3fs3_A 247 PNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERIIPYAVDYYLGIIIESESN 299 (359)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCC------
T ss_pred CCcccccccchhhhHHHHHHHHHhHHHHHHHHhceecChHHhhCCcccccccC
Confidence 98764 3455667889999999999999999999999999999999998753
No 3
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=100.00 E-value=3.2e-60 Score=445.04 Aligned_cols=208 Identities=34% Similarity=0.643 Sum_probs=160.9
Q ss_pred hcCCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHhHhcccccCCcccccchhhh
Q 017337 36 LAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEE 115 (373)
Q Consensus 36 l~~~~~~~ie~Lp~~v~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy~kR~eII~G~~e~~~~E~~~~~~~ 115 (373)
..|.+.+.+..++++++++|.+|+.||.+++.|+++|++++++||++|+++++|||++|++||
T Consensus 13 ~~~~~~~~~~~~~~~~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII----------------- 75 (225)
T 2e50_A 13 LNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELI----------------- 75 (225)
T ss_dssp TTC-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred cccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-----------------
Confidence 344445678899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCccHHHHHhhchhhhhccchhhHHhhccccccEEEEeCCC-CceEEEEEeCCCCCccCceEEEEEEecCCC
Q 017337 116 DKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDP-KGFKLEFYFDPNPYFKNSVLTKTYHMIDED 194 (373)
Q Consensus 116 ~~~~~~kgIP~FWltaL~n~~~ls~~I~e~De~iLk~L~DI~ve~~ed~-~gFkL~F~F~~NpYF~N~vLtK~y~~~~~~ 194 (373)
+|||+||++||+||+.|+.+|+++|++||+||+||+|++++++ .||+|+|+|.+||||+|++|||+|+|...|
T Consensus 76 ------~~IP~FW~tal~n~~~l~~~i~e~De~iL~~L~dI~v~~~~d~~~gf~i~F~F~~N~yF~N~vLtK~y~~~~~g 149 (225)
T 2e50_A 76 ------AKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNESG 149 (225)
T ss_dssp ------TTSTTHHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC-----
T ss_pred ------hccccHHHHHHhcChhhhhhccHhHHHHHHhcCeeEEEEccCCCCceEEEEEeCCCCCccCCEEEEEEEecCCC
Confidence 7999999999999999999999999999999999999998764 599999999999999999999999999888
Q ss_pred CcceecceeeeeeecCCCCcchhhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhccc
Q 017337 195 EPILEKAIGTEIEWYPGKCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDY 274 (373)
Q Consensus 195 dp~~~~~~gt~I~WK~GKnlT~k~~kKk~kkg~k~~r~v~k~~~~~SFFnFFs~~~~p~d~~~~dee~~eel~~~l~~D~ 274 (373)
+| +++||+|+||+|+|||+++.+|++++|++ |+ .+++.||||||+|+..|+ ++
T Consensus 150 ~~---~s~~t~I~Wk~gkd~t~~~~~kk~~~~~~--r~---~~~~~SFF~fF~~~~~~~-------------------~~ 202 (225)
T 2e50_A 150 DP---SSKSTEIKWKSGKDMTKRSSQTQNKASRK--RQ---HEEPESFFTWFTDHSDAG-------------------AD 202 (225)
T ss_dssp -----CEEECCCCBCSSCCC---------------------------CGGGGC-------------------------CH
T ss_pred Cc---ccCCCcceecCCCCccchhhhhcccccCc--cc---CCCCCCcceecCCCCCCc-------------------hh
Confidence 77 68999999999999999988776655543 32 246789999999986553 25
Q ss_pred cccccccccccccchhhcc
Q 017337 275 DIGSTIRDKIIPHAVSWFT 293 (373)
Q Consensus 275 eIg~~ikd~IiP~AV~yFt 293 (373)
+||++|+++|||+||.|||
T Consensus 203 eige~ikd~i~P~av~yy~ 221 (225)
T 2e50_A 203 ELGEVIKDDIWPNPLQYYL 221 (225)
T ss_dssp HHHHHHHHTTTTCSHHHHC
T ss_pred HHHHHHHhCccccHHHHhc
Confidence 8999999999999999998
No 4
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=100.00 E-value=3e-61 Score=461.63 Aligned_cols=204 Identities=18% Similarity=0.301 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHhHhcccccCCcccccchhhhhhhhhccCCCccHHHHHhhc
Q 017337 56 EVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNN 135 (373)
Q Consensus 56 ~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy~kR~eII~G~~e~~~~E~~~~~~~~~~~~~kgIP~FWltaL~n~ 135 (373)
..|+.++.++..|+++|.++.++|+++|+++++|||+||++|| +|||+||+|||+||
T Consensus 9 ~~l~~~~~~l~~lq~e~~~~~~ele~ky~~~~~Ply~kR~eII-----------------------~~IP~FWltal~n~ 65 (264)
T 2zd7_A 9 NEHAKAFLGLAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYI-----------------------DEIAEFWKIVLSQH 65 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------TTCTTHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----------------------hcchhHHHHHHHcC
Confidence 5688899999999999999999999999999999999999999 79999999999999
Q ss_pred hhhhhccchhhHHhhccccccEEEEe------CCCCceEEEEEeCC-CCCccCceEEEEEEecCC--C-Ccceecceeee
Q 017337 136 DVLSEEITERDEGALKFLKDIKWFRI------DDPKGFKLEFYFDP-NPYFKNSVLTKTYHMIDE--D-EPILEKAIGTE 205 (373)
Q Consensus 136 ~~ls~~I~e~De~iLk~L~DI~ve~~------ed~~gFkL~F~F~~-NpYF~N~vLtK~y~~~~~--~-dp~~~~~~gt~ 205 (373)
+.|+.+|+++|++||+||+||+|+++ +.++||+|+|+|.+ ||||+|++|||+|+|... | .+.+.+|+||+
T Consensus 66 ~~l~~~I~e~De~iL~~L~dI~v~~~~~~~~~~~~~gf~i~F~F~~~NpyF~N~vLtK~y~~~~~~dg~~~~~~~s~~t~ 145 (264)
T 2zd7_A 66 VSFANYIRASDFKYIDTIDKIKVEWLALESEMYDTRDFSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQEDGILTSEPVP 145 (264)
T ss_dssp TTGGGGSCGGGHHHHTTEEEEEEEEGGGTCTTSCTTCEEEEEEECCBTTTBCCEEEEEEEEEECCSSSCCCCEEEECCCC
T ss_pred hHHHhhcCHhhHHHHHhcCceEEEEecccccCCCCCceEEEEEeCCCCCCccCCeEEEEEEecccCCCCCCCceeEeecc
Confidence 99999999999999999999999996 46789999999999 999999999999999864 3 24446899999
Q ss_pred eeecCCC-CcchhhhhccC-CCCCCCCcccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhcccccccccccc
Q 017337 206 IEWYPGK-CLTQKLLKKKP-KKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDK 283 (373)
Q Consensus 206 I~WK~GK-nlT~k~~kKk~-kkg~k~~r~v~k~~~~~SFFnFFs~~~~p~d~~~~dee~~eel~~~l~~D~eIg~~ikd~ 283 (373)
|+||+|+ ++|+++++||+ ++|++++|+ ...||||||+++.+|.+. .+..||+||++|+++
T Consensus 146 I~WK~g~~~~~~~~~~kk~~~~~~~~~r~-----~~~SFF~fF~~~~~~~~~-------------~~~~d~eig~~Ikd~ 207 (264)
T 2zd7_A 146 IEWPQSYDSINPDLIKDKRSPEGKKKYRQ-----GMKTIFGWFRWTGLKPGK-------------EFPHGDSLASLFSEE 207 (264)
T ss_dssp CCCCGGGGGGCTTTCSCSSSHHHHHHHHH-----HHTSHHHHTTCCSSSTTS-------------SSTTHHHHHHHHHHT
T ss_pred cccCCCccccchhhhhhccccccccccCC-----CCCCcceecCCCCCCccc-------------cccCchhHHHHHHhh
Confidence 9999965 66777766553 344433332 357999999999877532 245689999999999
Q ss_pred ccccchhhccccccccc
Q 017337 284 IIPHAVSWFTGEAIQEE 300 (373)
Q Consensus 284 IiP~AV~yFtGea~~~e 300 (373)
|||+||.||||++.+.+
T Consensus 208 I~P~al~yf~g~~~d~~ 224 (264)
T 2zd7_A 208 IYPFCVKYYAEAQRDLE 224 (264)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred hccCHHHHhcccccccc
Confidence 99999999999988753
No 5
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=100.00 E-value=9.5e-57 Score=412.71 Aligned_cols=188 Identities=21% Similarity=0.442 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHhHhcccccCCcccccchhhhhhhhhccCCCccHHHHHhh
Q 017337 55 VEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKN 134 (373)
Q Consensus 55 v~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy~kR~eII~G~~e~~~~E~~~~~~~~~~~~~kgIP~FWltaL~n 134 (373)
+.+|+.||.+++.|++++.+++++||+||+++++|||++|++|| +|||+||++||+|
T Consensus 2 ~~~L~~iQ~e~~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~iI-----------------------~~IP~FW~t~l~n 58 (193)
T 3kyp_A 2 MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEII-----------------------QKIPGFWANTLRK 58 (193)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HTSTTTTHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHh-----------------------cCCccHHHHHHHc
Confidence 47899999999999999999999999999999999999999999 6999999999999
Q ss_pred chhhhhccchhhHHhhccccccEEEEeC-CCCceEEEEEeCC--CCCccCceEEEEEEecCCCCcceecceeeeeeecCC
Q 017337 135 NDVLSEEITERDEGALKFLKDIKWFRID-DPKGFKLEFYFDP--NPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPG 211 (373)
Q Consensus 135 ~~~ls~~I~e~De~iLk~L~DI~ve~~e-d~~gFkL~F~F~~--NpYF~N~vLtK~y~~~~~~dp~~~~~~gt~I~WK~G 211 (373)
|+.++.++ ++|++||+||+||+|++.. .+.||+|+|+|++ ||||+|++|||+|++..+|.++ ++||+|+||+|
T Consensus 59 ~~~ls~i~-~~De~~L~~L~di~v~~~~~~~~gf~i~F~F~~n~N~yF~N~vLtK~y~~~~~g~~~---~~~t~I~Wk~g 134 (193)
T 3kyp_A 59 HPALSDIV-PEDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFDNNQEKV---VECTRIKWKEG 134 (193)
T ss_dssp SSSSTTSS-CHHHHTTCCCCEECCBCCSSSSCCCEEEEECSCCSSCSCSCEEEECCCCCC----CC---CCCCCCCCCSS
T ss_pred CchHHHHH-HhhHHHHcCcceEEEEEccCCCCceEEEEEEcCCCCccccCceEEEEEEEcCCCCee---eccceeeeecC
Confidence 99999865 7999999999999999864 4569999999998 8999999999999998877664 57999999999
Q ss_pred CCcchhhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhccccccccccccccccchhh
Q 017337 212 KCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSW 291 (373)
Q Consensus 212 KnlT~k~~kKk~kkg~k~~r~v~k~~~~~SFFnFFs~~~~p~d~~~~dee~~eel~~~l~~D~eIg~~ikd~IiP~AV~y 291 (373)
||||+++.+|++ ++++++++.||||||++|.+|+ |++||++|+++|||+||.|
T Consensus 135 k~~t~~~~~kr~--------~~~~~~~~~SFF~wF~~~~~~~-------------------~~eige~ikd~i~P~~l~y 187 (193)
T 3kyp_A 135 KNPIAAVTHNRS--------DLDNEIPKWSIFEWFTTDELQD-------------------KPDVGELIRREIWHNPLSY 187 (193)
T ss_dssp CCCCC----------------------CCCTTTTCCSSCCTT-------------------TTCTTHHHHTTTTTCHHHH
T ss_pred CCcchhhhhccc--------cccccCCcchHhhhcCCCCcCC-------------------chHHHHHHHhCeeeCHHHH
Confidence 999987654322 3456678999999999987663 4589999999999999999
Q ss_pred ccccc
Q 017337 292 FTGEA 296 (373)
Q Consensus 292 FtGea 296 (373)
|||+.
T Consensus 188 y~ge~ 192 (193)
T 3kyp_A 188 YLGLE 192 (193)
T ss_dssp HC---
T ss_pred hCCCC
Confidence 99974
No 6
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=92.51 E-value=0.45 Score=34.35 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=36.4
Q ss_pred chhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Q 017337 41 SDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTK 93 (373)
Q Consensus 41 ~~~ie~Lp~~v~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy~k 93 (373)
-+++..|+ +..|+.....|...+.+|+.+|...|+.+.+||.+.
T Consensus 4 f~fLk~ls---------~eEL~~rl~~Ld~~Me~Ei~elr~RY~~KRqPIldA 47 (51)
T 2jo8_A 4 YEFLKSWT---------VEDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILDA 47 (51)
T ss_dssp CGGGGGSC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHhCC---------HHHHHHHHHHccHHHHHHHHHHHHHHHHhHhhHHHH
Confidence 35677777 445666778888999999999999999999999875
No 7
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=90.99 E-value=0.053 Score=51.97 Aligned_cols=10 Identities=10% Similarity=0.341 Sum_probs=4.4
Q ss_pred HHHHhhchhh
Q 017337 129 LTAMKNNDVL 138 (373)
Q Consensus 129 ltaL~n~~~l 138 (373)
..+|.+++.|
T Consensus 180 ~~~l~~~~~L 189 (386)
T 2ca6_A 180 AKTFQSHRLL 189 (386)
T ss_dssp HHHHHHCTTC
T ss_pred HHHHHhCCCc
Confidence 3445444433
No 8
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=85.69 E-value=0.17 Score=51.04 Aligned_cols=57 Identities=25% Similarity=0.289 Sum_probs=28.7
Q ss_pred HHHHHHHHhhhhcCCCchhhhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 017337 25 LVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVL-REIQSEHDELEAKFFEERAALEAK 82 (373)
Q Consensus 25 ~~~~l~~~l~~l~~~~~~~ie~Lp~~v~~rv~aL-k~lQ~e~~~le~kf~~E~~~LE~K 82 (373)
|+....+.+.+|...-...|..|-. ++..+..| ...+.++..|+.+|.+.+..|-.+
T Consensus 77 l~~~~~~~i~sLp~~v~~rI~aLk~-lQ~e~~~le~ef~~ev~eLE~Ky~~~~~PLy~K 134 (417)
T 2ayu_A 77 LVGQDSGYVGGLPKNVKEKLLSLKT-LQSELFEVEKEFQVEMFELENKFLQKYKPIWEQ 134 (417)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccchhhcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555433334444442 33333333 446666677777776665555433
No 9
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=72.16 E-value=0.77 Score=44.83 Aligned_cols=8 Identities=0% Similarity=0.069 Sum_probs=3.2
Q ss_pred cccccccc
Q 017337 240 ESFFNFFN 247 (373)
Q Consensus 240 ~SFFnFFs 247 (373)
+|.-+.++
T Consensus 242 psL~~il~ 249 (335)
T 4fp9_B 242 PLLKDILR 249 (335)
T ss_dssp CCHHHHTT
T ss_pred ccHHHHHc
Confidence 34444443
No 10
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=69.07 E-value=1.2 Score=42.12 Aligned_cols=43 Identities=14% Similarity=-0.033 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH
Q 017337 49 PAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMY 91 (373)
Q Consensus 49 ~~v~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy 91 (373)
.+++..+..|..||.++..+..+..++..++.+-+..+++.|.
T Consensus 9 ~~l~~~~~~l~~lq~e~~~~~~ele~ky~~~~~Ply~kR~eII 51 (264)
T 2zd7_A 9 NEHAKAFLGLAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYI 51 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3467788899999999999888887777777765555544444
No 11
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=66.35 E-value=18 Score=31.71 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHhHhc
Q 017337 51 VRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVN 99 (373)
Q Consensus 51 v~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy~kR~eII~ 99 (373)
+-..+..|..|+.++..+++.+..++..+..+|....+||-.+...+-.
T Consensus 18 ~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~ 66 (171)
T 2p2u_A 18 AEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELED 66 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888999999999999999999999999999999999988887763
No 12
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=46.78 E-value=27 Score=28.09 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=24.8
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017337 42 DVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAA 78 (373)
Q Consensus 42 ~~ie~Lp~~v~~rv~aLk~lQ~e~~~le~kf~~E~~~ 78 (373)
+-..+|||+.| .+.||.++..|+.++.++...
T Consensus 6 ~d~s~LPpeqR-----kkkL~~Ki~el~~ei~ke~~~ 37 (98)
T 2ke4_A 6 EDFSHLPPEQQ-----RKRLQQQLEERSRELQKEVDQ 37 (98)
T ss_dssp SCSSSSCHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 34589999998 457788888888888777664
No 13
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=34.23 E-value=52 Score=26.01 Aligned_cols=30 Identities=20% Similarity=0.551 Sum_probs=24.0
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017337 42 DVLEKLTPAVRKRVEVLREIQSEHDELEAK 71 (373)
Q Consensus 42 ~~ie~Lp~~v~~rv~aLk~lQ~e~~~le~k 71 (373)
+.+++||.++++.+.-++.+-.++..+..+
T Consensus 11 d~ie~LP~El~r~~~~irelD~~~~~~~~~ 40 (104)
T 4afl_A 11 DSIENLPFELQRNFQLMRDLDQRTEDLKAE 40 (104)
T ss_dssp HSGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999888777765544
No 14
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=34.23 E-value=1.3e+02 Score=23.33 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=26.1
Q ss_pred CchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017337 40 HSDVLEKLTPAVRKRVEVLREIQSEHDELEAKF 72 (373)
Q Consensus 40 ~~~~ie~Lp~~v~~rv~aLk~lQ~e~~~le~kf 72 (373)
|-+.++.|..+|+..|..+.-||.++..|..+-
T Consensus 4 S~ElleqLE~KIq~avdtI~lLqmEieELKekN 36 (81)
T 2jee_A 4 SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKN 36 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677888888888888888888888886654
No 15
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.41 E-value=21 Score=23.05 Aligned_cols=12 Identities=8% Similarity=0.141 Sum_probs=9.3
Q ss_pred CCCCCCCccccc
Q 017337 361 AQQGERPPECKQ 372 (373)
Q Consensus 361 ~~~~~~~~ec~~ 372 (373)
...|++|+.|.+
T Consensus 3 ~~~gekp~~C~~ 14 (38)
T 2eln_A 3 SGSSGILLKCPT 14 (38)
T ss_dssp CSSCCCCEECSS
T ss_pred CCCCCCCCCCCC
Confidence 456899999974
No 16
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=27.70 E-value=1.2e+02 Score=28.71 Aligned_cols=46 Identities=20% Similarity=0.391 Sum_probs=33.5
Q ss_pred hhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Q 017337 44 LEKLTPA-----VRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTK 93 (373)
Q Consensus 44 ie~Lp~~-----v~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~PLy~k 93 (373)
+.+++|. ++.||...+.+..++. .|.+|+..+|..|.+.++-|-.+
T Consensus 36 L~sk~P~qa~~iL~~Rl~~~k~i~keL~----~f~kERa~IEe~YakqLrkLakk 86 (287)
T 3g9g_A 36 LTTKSPYEATETIRIRLSQVKLLNKDFY----LLFKELANLKRNYAQQLRKIIAE 86 (287)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556665 4566666666666554 58899999999999988877766
No 17
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=26.79 E-value=1.2e+02 Score=23.74 Aligned_cols=29 Identities=14% Similarity=0.176 Sum_probs=25.1
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017337 45 EKLTPAVRKRVEVLREIQSEHDELEAKFF 73 (373)
Q Consensus 45 e~Lp~~v~~rv~aLk~lQ~e~~~le~kf~ 73 (373)
.++|+.++..+..+..+|.++..+..+..
T Consensus 2 ~~~~~e~Q~~i~~~~~l~~~~~~l~~q~~ 30 (117)
T 2zqm_A 2 QNIPPQVQAMLGQLESYQQQLQLVVQQKQ 30 (117)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999998876653
No 18
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=25.43 E-value=2.1e+02 Score=24.72 Aligned_cols=52 Identities=8% Similarity=0.044 Sum_probs=33.3
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhchhHHHHH
Q 017337 44 LEKLTPAVRKRVEVLREIQSEHDELEAKF---FEERAALEAKYQKLYQPMYTKRY 95 (373)
Q Consensus 44 ie~Lp~~v~~rv~aLk~lQ~e~~~le~kf---~~E~~~LE~Ky~k~~~PLy~kR~ 95 (373)
|..|-..++.+-..+..||.++..|..++ ..++..|+..+..+..-+..+..
T Consensus 84 i~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~ 138 (152)
T 3a7p_A 84 IRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTE 138 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666777777777777666 34666677777766666655443
No 19
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=23.79 E-value=82 Score=23.22 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 017337 47 LTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQP 89 (373)
Q Consensus 47 Lp~~v~~rv~aLk~lQ~e~~~le~kf~~E~~~LE~Ky~k~~~P 89 (373)
+..+...||..|...+.. ..|..+=..|..+|++.|-..++-
T Consensus 2 m~~~~i~RINeLakK~K~-~gLT~eEk~EQ~~LR~eYl~~fR~ 43 (60)
T 3bhp_A 2 ISNAKIARINELAAKAKA-GVITEEEKAEQQKLRQEYLKGFRS 43 (60)
T ss_dssp CCHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 445667789999888876 555555567788889998766544
No 20
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=22.01 E-value=19 Score=30.79 Aligned_cols=8 Identities=25% Similarity=0.829 Sum_probs=4.0
Q ss_pred cccccchh
Q 017337 283 KIIPHAVS 290 (373)
Q Consensus 283 ~IiP~AV~ 290 (373)
.|+|.-+.
T Consensus 94 divP~ki~ 101 (140)
T 2byk_A 94 QIVPQKIR 101 (140)
T ss_dssp TTSCSCC-
T ss_pred ccccchhh
Confidence 55665543
No 21
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=21.50 E-value=55 Score=24.87 Aligned_cols=24 Identities=8% Similarity=0.281 Sum_probs=18.8
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHH
Q 017337 43 VLEKLTPAVRKRVEVLREIQSEHD 66 (373)
Q Consensus 43 ~ie~Lp~~v~~rv~aLk~lQ~e~~ 66 (373)
+|+.||++++.+|.+|-.-.-...
T Consensus 8 wL~~LP~~Lq~kV~aIV~~~PsSl 31 (70)
T 2lh0_A 8 FLDELPESLSRKIGTVVRVLPSSL 31 (70)
T ss_dssp GGGGSCHHHHHHHHHHHTTCTTHH
T ss_pred HHHhCCHHHHHHHHHHHHhCccHH
Confidence 899999999999988865444433
No 22
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=20.61 E-value=38 Score=21.67 Aligned_cols=12 Identities=8% Similarity=-0.047 Sum_probs=9.2
Q ss_pred CCCCCCCccccc
Q 017337 361 AQQGERPPECKQ 372 (373)
Q Consensus 361 ~~~~~~~~ec~~ 372 (373)
+-.||+|+.|.+
T Consensus 2 ~~~gekp~~C~~ 13 (36)
T 1fv5_A 2 SLLKPARFMCLP 13 (36)
T ss_dssp CSSSCCCCEETT
T ss_pred CCCCccCeECCC
Confidence 345899999975
No 23
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=20.06 E-value=43 Score=28.51 Aligned_cols=13 Identities=8% Similarity=0.118 Sum_probs=7.9
Q ss_pred ccccccccccccc
Q 017337 235 KTEECESFFNFFN 247 (373)
Q Consensus 235 k~~~~~SFFnFFs 247 (373)
..+....+|.|..
T Consensus 81 ~AV~~~e~~dFL~ 93 (140)
T 2byk_A 81 QVVNKNKNLEFLL 93 (140)
T ss_dssp HHHHTCSTTGGGT
T ss_pred HHHhcCchhhhHh
Confidence 3444556777776
Done!