BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017338
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OLH|A Chain A, Human 3-Mercaptopyruvate Sulfurtransferase
Length = 302
Score = 229 bits (585), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 120/291 (41%), Positives = 161/291 (55%), Gaps = 27/291 (9%)
Query: 77 VVSVDWLHANLREPD----LKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRT 132
+VS W+ LR P L++LDASWY+P R+ +E++ HIPGA FFD+D +DRT
Sbjct: 23 MVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSDRT 82
Query: 133 TNLPHMLPSEEAFAAAVSALGLENKDGLVVYDG--KGIFSAARVWWMFRVFGHDRVWVLD 190
+ HMLP E FA LG+ +V+YD +G++SA RVWWMFR FGH V +LD
Sbjct: 83 SPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLD 142
Query: 191 GGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQ 250
GGL W + S S A P F+ + P I T E
Sbjct: 143 GGLRHWLRQNLPLSSGKSQPA---------------------PAEFRAQLDPAFIKTYED 181
Query: 251 VKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADE 310
+K N+E +Q+VD+R+ RF G PEPR GI GH+PG+ IPF L +E
Sbjct: 182 IKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEE 241
Query: 311 LKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW 361
++ F+++ + L KP+V CG+GVTAC +ALG GK DV +YDGSW EW
Sbjct: 242 IRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEW 292
>pdb|1URH|A Chain A, The "rhodanese" Fold And Catalytic Mechanism Of
3-Mercaptopyruvate Sulfotransferases: Crystal Structure
Of Ssea From Escherichia Coli
pdb|1URH|B Chain B, The "rhodanese" Fold And Catalytic Mechanism Of
3-Mercaptopyruvate Sulfotransferases: Crystal Structure
Of Ssea From Escherichia Coli
Length = 280
Score = 215 bits (547), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 114/294 (38%), Positives = 165/294 (56%), Gaps = 23/294 (7%)
Query: 78 VSVDWLHANLREPDLKVLDASWYMP-DEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLP 136
V DWL ++ +P+++++DA P E RN QEY HIPGA+FFD++ ++D T+ LP
Sbjct: 6 VGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLP 65
Query: 137 HMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRW 196
HMLP E FA A+ LG+ L+VYD +FSA R WWM R FG ++V +L GGL W
Sbjct: 66 HMLPRPETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGW 125
Query: 197 RASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRNIE 256
+ D +L A E E F F P + + V
Sbjct: 126 QR-----------DDLLLEEGAVELPEG----------EFNAAFNPEAVVKVTDVLLASH 164
Query: 257 EGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFE 316
E T Q++DAR ARF+ + EPR G+R GH+PG+ +P+ +++ + L DEL F
Sbjct: 165 ENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGE-LKTTDELDAIFF 223
Query: 317 QEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVE 370
G+S +KP++ + G+GVTA ++ L L L +V +YDG+W+EWGA+ D PVE
Sbjct: 224 GRGVSYDKPIIVSXGSGVTAAVVLLALATLDVPNVKLYDGAWSEWGARADLPVE 277
>pdb|1ORB|A Chain A, Active Site Structural Features For Chemically Modified
Forms Of Rhodanese
Length = 296
Score = 207 bits (527), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 121/292 (41%), Positives = 155/292 (53%), Gaps = 29/292 (9%)
Query: 77 VVSVDWLHANLRE----PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRT 132
+VS WL ++R P L+VLDASWY P R +EY H+PGA FFD++ D+
Sbjct: 9 LVSTKWLAESVRAGKVGPGLRVLDASWYSPG-TREARKEYLERHVPGASFFDIEECRDKA 67
Query: 133 TNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGK--GIFSAARVWWMFRVFGHDRVWVLD 190
+ MLPSE FA V +LG+ N +VVYDG G F A RVWWMFRVFGH V VL+
Sbjct: 68 SPYEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLN 127
Query: 191 GGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQ 250
GG W G+ V S S P F+ L+ T EQ
Sbjct: 128 GGFRNWLKEGHPVTSEPSRPE---------------------PAIFKATLNRSLLKTYEQ 166
Query: 251 VKRNIEEGTYQLVDARSKARFDGDAPEPRK-GIRSGHVPGSKCIPFPQMLDASQTLLPAD 309
V N+E +QLVD+R++ R+ G PEP G+ SGH+ GS +PF L +
Sbjct: 167 VLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPE 226
Query: 310 ELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW 361
EL+ FE + + L KP++ C GVTAC +AL GK DVA+YDGSW EW
Sbjct: 227 ELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEW 278
>pdb|1BOH|A Chain A, Sulfur-Substituted Rhodanese (Orthorhombic Form)
pdb|1BOI|A Chain A, N-Terminally Truncated Rhodanese
pdb|2ORA|A Chain A, Rhodanese (Thiosulfate: Cyanide Sulfurtransferase)
Length = 296
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 120/292 (41%), Positives = 154/292 (52%), Gaps = 29/292 (9%)
Query: 77 VVSVDWLHANLRE----PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRT 132
+VS WL ++R P L+VLDASWY P R +EY H+PGA FFD++ D+
Sbjct: 9 LVSTKWLAESVRAGKVGPGLRVLDASWYSPG-TREARKEYLERHVPGASFFDIEECRDKA 67
Query: 133 TNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGK--GIFSAARVWWMFRVFGHDRVWVLD 190
+ MLPSE FA V +LG+ N +VVYDG G F A RVWWMFRVFGH V VL+
Sbjct: 68 SPYEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLN 127
Query: 191 GGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQ 250
GG W G+ V S S P F+ L+ T EQ
Sbjct: 128 GGFRNWLKEGHPVTSEPSRPE---------------------PAIFKATLNRSLLKTYEQ 166
Query: 251 VKRNIEEGTYQLVDARSKARFDGDAPEPRK-GIRSGHVPGSKCIPFPQMLDASQTLLPAD 309
V N+E +QLVD+R++ R+ G PEP G+ SGH+ GS +PF L +
Sbjct: 167 VLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPE 226
Query: 310 ELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW 361
EL+ FE + + L KP++ GVTAC +AL GK DVA+YDGSW EW
Sbjct: 227 ELRAMFEAKKVDLTKPLIATXRKGVTACHIALAAYLCGKPDVAIYDGSWFEW 278
>pdb|1RHS|A Chain A, Sulfur-Substituted Rhodanese
Length = 296
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 120/292 (41%), Positives = 154/292 (52%), Gaps = 29/292 (9%)
Query: 77 VVSVDWLHANLRE----PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRT 132
+VS WL ++R P L+VLDASWY P R +EY H+PGA FFD++ D+
Sbjct: 9 LVSTKWLAESVRAGKVGPGLRVLDASWYSPG-TREARKEYLERHVPGASFFDIEECRDKA 67
Query: 133 TNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGK--GIFSAARVWWMFRVFGHDRVWVLD 190
+ MLPSE FA V +LG+ N +VVYDG G F A RVWWMFRVFGH V VL+
Sbjct: 68 SPYEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLN 127
Query: 191 GGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQ 250
GG W G+ V S S P F+ L+ T EQ
Sbjct: 128 GGFRNWLKEGHPVTSEPSRPE---------------------PAIFKATLNRSLLKTYEQ 166
Query: 251 VKRNIEEGTYQLVDARSKARFDGDAPEPRK-GIRSGHVPGSKCIPFPQMLDASQTLLPAD 309
V N+E +QLVD+R++ R+ G PEP G+ SGH+ GS +PF L +
Sbjct: 167 VLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPE 226
Query: 310 ELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW 361
EL+ FE + + L KP++ GVTAC +AL GK DVA+YDGSW EW
Sbjct: 227 ELRAMFEAKKVDLTKPLIATXRKGVTACHIALAAYLCGKPDVAIYDGSWFEW 278
>pdb|1DP2|A Chain A, Crystal Structure Of The Complex Between Rhodanese And
Lipoate
Length = 293
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/292 (41%), Positives = 154/292 (52%), Gaps = 29/292 (9%)
Query: 77 VVSVDWLHANLRE----PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRT 132
+VS WL ++R P L+VLDASWY P R +EY H+PGA FFD++ D+
Sbjct: 9 LVSTKWLAESVRAGKVGPGLRVLDASWYSPG-TREARKEYLERHVPGASFFDIEECRDKA 67
Query: 133 TNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGK--GIFSAARVWWMFRVFGHDRVWVLD 190
+ MLPSE FA V +LG+ N +VVYDG G F A RVWWMFRVFGH V VL+
Sbjct: 68 SPYEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLN 127
Query: 191 GGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQ 250
GG W G+ V S S P F+ L+ T EQ
Sbjct: 128 GGFRNWLKEGHPVTSEPSRPE---------------------PAIFKATLNRSLLKTYEQ 166
Query: 251 VKRNIEEGTYQLVDARSKARFDGDAPEPRK-GIRSGHVPGSKCIPFPQMLDASQTLLPAD 309
V N+E +QLVD+R++ R+ G PEP G+ SGH+ GS +PF L +
Sbjct: 167 VLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPE 226
Query: 310 ELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW 361
EL+ FE + + L KP++ GVTAC +AL GK DVA+YDGSW EW
Sbjct: 227 ELRAMFEAKKVDLTKPLIATXRKGVTACHIALAAYLCGKPDVAIYDGSWFEW 278
>pdb|1RHD|A Chain A, Structure Of Bovine Liver Rhodanese. I. Structure
Determination At 2.5 Angstroms Resolution And A
Comparison Of The Conformation And Sequence Of Its Two
Domains
Length = 293
Score = 201 bits (512), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 119/292 (40%), Positives = 155/292 (53%), Gaps = 29/292 (9%)
Query: 77 VVSVDWLHANLRE----PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRT 132
+VS WL ++R P L+VLDASWY P R +EY H+PGA FFD++ D+
Sbjct: 9 LVSTKWLAESVRAGKVGPGLRVLDASWYSPG-TREARKEYLERHVPGASFFDIEECRDKA 67
Query: 133 TNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGK--GIFSAARVWWMFRVFGHDRVWVLD 190
+ MLPSE FA V +LG+ N +VVY+G G F A RVWWMFRVFGH V VL+
Sbjct: 68 SPYEVMLPSEAGFADYVGSLGISNDTHVVVYNGDDLGSFYAPRVWWMFRVFGHRTVSVLN 127
Query: 191 GGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQ 250
GG W G+ V S S P F+ L+ T EQ
Sbjct: 128 GGFRNWLKEGHPVTSEPSRPE---------------------PAIFKATLNRSLLKTYEQ 166
Query: 251 VKRNIEEGTYQLVDARSKARFDGDAPEPRK-GIRSGHVPGSKCIPFPQMLDASQTLLPAD 309
V N+E +QLVD+R++ R+ G PEP G+ SGH+ GS +PF L + +
Sbjct: 167 VLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMDFLTENGFEKSPE 226
Query: 310 ELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW 361
EL+ FE + + L KP++ GVTAC +AL GK DVA+YDGSW EW
Sbjct: 227 ELRAMFEAKKVDLTKPLIATXRKGVTACHIALAAYLCGKPDVAIYDGSWFEW 278
>pdb|3UTN|X Chain X, Crystal Structure Of Tum1 Protein From Saccharomyces
Cerevisiae
Length = 327
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 148/276 (53%), Gaps = 21/276 (7%)
Query: 95 LDASWYMPD-EQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153
+DA+WY+P + N IP ++FFD+D ++D+ + PHM P+++ F A+S LG
Sbjct: 50 VDATWYLPSWKLDNKVDFLTKPRIPNSIFFDIDAISDKKSPYPHMFPTKKVFDDAMSNLG 109
Query: 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAIL 213
++ D LVVYD G FS+ R W V GH +V++L+ ++R Y ++SS
Sbjct: 110 VQKDDILVVYDRVGNFSSPRCAWTLGVMGHPKVYLLN-NFNQYREFKYPLDSSKVAAFSP 168
Query: 214 KASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDG 273
+ E+ E ++V ++ FQ L+ + E K+ + DARS RF+G
Sbjct: 169 YPKSHYESSESFQDKEIV---DYEEMFQ--LVKSGELAKK------FNAFDARSLGRFEG 217
Query: 274 DAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLP-ADE-----LKKRFEQEGISLE--KP 325
PEPR I SGH+PG++ +P+ +LD P A E L+K + +L+ KP
Sbjct: 218 TEPEPRSDIPSGHIPGTQPLPYGSLLDPETKTYPEAGEAIHATLEKALKDFHCTLDPSKP 277
Query: 326 VVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW 361
+ +CGTGV+ I+ L G +V +YDGSWTEW
Sbjct: 278 TICSCGTGVSGVIIKTALELAGVPNVRLYDGSWTEW 313
>pdb|1UAR|A Chain A, Crystal Structure Of Rhodanese From Thermus Thermophilus
Hb8
Length = 285
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 135/301 (44%), Gaps = 33/301 (10%)
Query: 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTN 134
E +VS DW+ +L +P ++VL+ DE Y HIPGA +D D
Sbjct: 7 EVLVSTDWVQEHLEDPKVRVLEV-----DED---ILLYDTGHIPGAQ--KIDWQRDFWDP 56
Query: 135 LPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLP 194
+ SEE FA LG+ N +V+Y K + AA +W F+ GH V + +GG
Sbjct: 57 VVRDFISEEEFAKLXERLGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLXNGGRQ 116
Query: 195 RWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRN 254
+W G + + S E Y+ + + ++ H+I
Sbjct: 117 KWVEEGRPLTTEV-------PSYPPGRYEVPYRDESI--RAYRDDVLEHII--------K 159
Query: 255 IEEGTYQLVDARSKARFDGDAPE----PRKG-IRSGHVPGSKCIPFPQMLDASQTLLPAD 309
++EG LVD RS + G+ P++G +R+GH+PG+K IP+ + ++ T A+
Sbjct: 160 VKEGKGALVDVRSPQEYRGELTHXPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAE 219
Query: 310 ELKKRFEQEGISLEKPVVTACGTGVTACILALGLNR-LGKHDVAVYDGSWTEWGAQPDTP 368
EL+ +E GI+ +K +V + L LG V YDGSWTEWG P
Sbjct: 220 ELRALYEPLGITKDKDIVVYXRIAERSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVP 279
Query: 369 V 369
+
Sbjct: 280 I 280
>pdb|3HWI|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa2 (Rhodanese-Like Protein) From
Mycobacterium Tuberculosis
pdb|3HWI|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa2 (Rhodanese-Like Protein) From
Mycobacterium Tuberculosis
Length = 298
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 130/303 (42%), Gaps = 38/303 (12%)
Query: 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLP 136
+VS DW +NL P + ++ DE + Y HI GA+ +D D +
Sbjct: 28 LVSADWAESNLHAPKVVFVEV-----DEDTSA---YDRDHIAGAI--KLDWRTDLQDPVK 77
Query: 137 HMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRW 196
+ F+ +S G+ N+D +++Y G + AA +W F+++GH++V +LDGG +W
Sbjct: 78 RDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKW 137
Query: 197 RASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRNIE 256
G + S + +A+ P F+ ++ + N++
Sbjct: 138 ELDGRPLSSDPVSRPVTSYTASP-------------PDNTIRAFRDEVLAAI-----NVK 179
Query: 257 EGTYQLVDARSKARFDGDAPEP-----RKGIRSGHVPGSKCIPFPQMLDASQTLLPADEL 311
L+D RS F G P + R GH+PG+ +P+ + + T +EL
Sbjct: 180 ----NLIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEEL 235
Query: 312 KKRFEQEGISLEKPVVTACGTGVTACILALGLNR-LGKHDVAVYDGSWTEWGAQPDTPVE 370
K + G+ K + C G + L LG +V YDGSWTE+G+ P+E
Sbjct: 236 AKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIE 295
Query: 371 TSS 373
S
Sbjct: 296 LGS 298
>pdb|3AAX|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Monoclinic Form
pdb|3AAX|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Monoclinic Form
Length = 277
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 129/304 (42%), Gaps = 40/304 (13%)
Query: 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLP 136
+VS DW +NL P + ++ DE + Y HI GA+ +D D +
Sbjct: 7 LVSADWAESNLHAPKVVFVEV-----DEDTSA---YDRDHIAGAI--KLDWRTDLQDPVK 56
Query: 137 HMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRW 196
+ F+ +S G+ N+D +++Y G + AA +W F+++GH++V +LDGG +W
Sbjct: 57 RDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKW 116
Query: 197 RASGYDVESSASGDAILKASAA-SEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRNI 255
G + S + +A+ + + ++ +V+ +
Sbjct: 117 ELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKN----------------- 159
Query: 256 EEGTYQLVDARSKARFDGDAPEP-----RKGIRSGHVPGSKCIPFPQMLDASQTLLPADE 310
L+D RS F G P + R GH+PG+ +P+ + + T +E
Sbjct: 160 ------LIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEE 213
Query: 311 LKKRFEQEGISLEKPVVTACGTGVTACILALGLNR-LGKHDVAVYDGSWTEWGAQPDTPV 369
L K + G+ K + C G + L LG +V YDGSWTE+G+ P+
Sbjct: 214 LAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPI 273
Query: 370 ETSS 373
E S
Sbjct: 274 ELGS 277
>pdb|3AAY|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Orthorhombic Form
pdb|3AAY|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Orthorhombic Form
Length = 277
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 128/304 (42%), Gaps = 40/304 (13%)
Query: 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLP 136
+VS DW +NL P + ++ DE + Y HI GA+ +D D +
Sbjct: 7 LVSADWAESNLHAPKVVFVEV-----DEDTSA---YDRDHIAGAI--KLDWRTDLQDPVK 56
Query: 137 HMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRW 196
+ F+ +S G+ N+D +++Y G + AA +W F+++GH++V +LDGG +W
Sbjct: 57 RDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKW 116
Query: 197 RASGYDVESSASGDAILKASAA-SEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRNI 255
G + S + +A+ + + ++ +V+ +
Sbjct: 117 ELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKN----------------- 159
Query: 256 EEGTYQLVDARSKARFDGDAPEP-----RKGIRSGHVPGSKCIPFPQMLDASQTLLPADE 310
L+D RS F G P + R GH+PG+ +P+ + + T +E
Sbjct: 160 ------LIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEE 213
Query: 311 LKKRFEQEGISLEKPVVTACGTGVTACILALGLNR-LGKHDVAVYDGSWTEWGAQPDTPV 369
L K + G+ K + G + L LG +V YDGSWTE+G+ P+
Sbjct: 214 LAKLYADAGLDNSKETIAYXRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPI 273
Query: 370 ETSS 373
E S
Sbjct: 274 ELGS 277
>pdb|1H4K|X Chain X, Sulfurtransferase From Azotobacter Vinelandii In Complex
With Hypophosphite
pdb|1H4M|X Chain X, Sulfurtransferase From Azotobacter Vinelandii In Complex
With Phosphate
Length = 271
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 114/288 (39%), Gaps = 33/288 (11%)
Query: 83 LHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSE 142
L A L P+L ++D + Y HIPGA F D P + P
Sbjct: 16 LQARLSAPELILVDLT---------SAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPR 66
Query: 143 EAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYD 202
E + LG + VVYD +G A R W+ V G R L+GGL W A
Sbjct: 67 EQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRP 126
Query: 203 VESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQL 262
+ L A A GP +P + + + + +
Sbjct: 127 LSRE------LPAPAG-------------GPVALSLHDEPTA--SRDYLLGRLGAADLAI 165
Query: 263 VDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 322
DARS + G+ KG GH+PG+ + +D S+ L ++ R E+ GI+
Sbjct: 166 WDARSPQEYRGEKVLAAKG---GHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITP 222
Query: 323 EKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVE 370
+K +VT C T + + L LG V Y GSW EWG PDTPVE
Sbjct: 223 DKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVE 270
>pdb|1E0C|A Chain A, Sulfurtransferase From Azotobacter Vinelandii
Length = 271
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 113/288 (39%), Gaps = 33/288 (11%)
Query: 83 LHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSE 142
L A L P+L ++D + Y HIPGA F D P + P
Sbjct: 16 LQARLSAPELILVDLT---------SAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPR 66
Query: 143 EAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYD 202
E + LG + VVYD +G A R W+ V G R L+GGL W A
Sbjct: 67 EQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRP 126
Query: 203 VESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQL 262
+ L A A GP +P + + + + +
Sbjct: 127 LSRE------LPAPAG-------------GPVALSLHDEPTA--SRDYLLGRLGAADLAI 165
Query: 263 VDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 322
DARS + G+ KG GH+PG+ + +D S+ L ++ R E+ GI+
Sbjct: 166 WDARSPQEYRGEKVLAAKG---GHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITP 222
Query: 323 EKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVE 370
+K +VT T + + L LG V Y GSW EWG PDTPVE
Sbjct: 223 DKEIVTHXQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVE 270
>pdb|3IPP|A Chain A, Crystal Structure Of Sulfur-Free Ynje
pdb|3IPP|B Chain B, Crystal Structure Of Sulfur-Free Ynje
Length = 416
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 135/316 (42%), Gaps = 51/316 (16%)
Query: 75 EPVVSVDWLHANLREP---------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDV 125
E +V WLH +L++ D KV++A+W P + Y ++HIPGA + D
Sbjct: 124 EQLVYPQWLH-DLQQGKEVTAKPAGDWKVIEAAWGAP-------KLYLISHIPGADYIDT 175
Query: 126 DGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDR 185
+ V + L + + S+E A ++ G+ + +++Y G+ +++AARV + G
Sbjct: 176 NEV--ESEPLWNKV-SDEQLKAMLAKHGIRHDTTVILY-GRDVYAAARVAQIMLYAGVKD 231
Query: 186 VWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKF--QPH 243
V +LDGG W +G VE +V F K QP
Sbjct: 232 VRLLDGGWQTWSDAGLPVERGTPP-------------------KVKAEPDFGVKIPAQPQ 272
Query: 244 LIWTLEQVKRNIEEGTYQLVDARSKARFDGDAP-----EPR---KGIRSGHVPGSKCIPF 295
L+ +EQ + + LV RS F G +P+ G R GH GS
Sbjct: 273 LMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHA-GSDSTHM 331
Query: 296 PQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYD 355
+ T+ AD++ ++ I E+ V CGTG A + +G +V+VYD
Sbjct: 332 EDFHNPDGTMRSADDITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYD 391
Query: 356 GSWTEWGAQPDTPVET 371
G W EW + P PV T
Sbjct: 392 GGWYEWSSDPKNPVAT 407
>pdb|3HZU|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Ssea (Rhodanese) From Mycobacterium
Tuberculosis
Length = 318
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 134/307 (43%), Gaps = 51/307 (16%)
Query: 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTN 134
E +V+ DWL A++ P L ++++ DE Y V HIPGA+ +D D
Sbjct: 39 ERLVTADWLSAHMGAPGLAIVES-----DED---VLLYDVGHIPGAV--KIDWHTDLNDP 88
Query: 135 LPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLP 194
+ E FA + G+ D +V+Y K + AA W+F +FGH V +L+GG
Sbjct: 89 RVRDYINGEQFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGRD 148
Query: 195 RW----RASGYDVES-SASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLE 249
W R + DV + + +G +++ ++A + ++ V+
Sbjct: 149 LWLAERRETTLDVPTKTCTGYPVVQ---RNDAPIRAFRDDVLAIL--------------- 190
Query: 250 QVKRNIEEGTYQLVDARSKARFDG------DAPEPRKGIRSGHVPGSKCIPFPQMLDASQ 303
G L+D RS + G D PE +R+GH+P + IP+ + D S
Sbjct: 191 --------GAQPLIDVRSPEEYTGKRTHMPDYPE-EGALRAGHIPTAVHIPWGKAADESG 241
Query: 304 TLLPADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNR-LGKHDVAVYDGSWTEWG 362
+EL++ ++ I+ + V C G + L LGK DV YDGSWTEWG
Sbjct: 242 RFRSREELERLYDF--INPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWTEWG 299
Query: 363 AQPDTPV 369
P+
Sbjct: 300 NAVRVPI 306
>pdb|3IPO|A Chain A, Crystal Structure Of Ynje
pdb|3IPO|B Chain B, Crystal Structure Of Ynje
Length = 416
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 134/316 (42%), Gaps = 51/316 (16%)
Query: 75 EPVVSVDWLHANLREP---------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDV 125
E +V WLH +L++ D KV++A+W P + Y ++HIPGA + D
Sbjct: 124 EQLVYPQWLH-DLQQGKEVTAKPAGDWKVIEAAWGAP-------KLYLISHIPGADYIDT 175
Query: 126 DGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDR 185
+ V + L + + S+E A ++ G+ + +++Y G+ +++AARV + G
Sbjct: 176 NEV--ESEPLWNKV-SDEQLKAMLAKHGIRHDTTVILY-GRDVYAAARVAQIMLYAGVKD 231
Query: 186 VWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKF--QPH 243
V +LDGG W +G VE +V F K QP
Sbjct: 232 VRLLDGGWQTWSDAGLPVERGTPP-------------------KVKAEPDFGVKIPAQPQ 272
Query: 244 LIWTLEQVKRNIEEGTYQLVDARSKARFDGDAP-----EPR---KGIRSGHVPGSKCIPF 295
L+ +EQ + + LV RS F G +P+ G R GH GS
Sbjct: 273 LMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHA-GSDSTHM 331
Query: 296 PQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYD 355
+ T+ AD++ ++ I E+ V GTG A + +G +V+VYD
Sbjct: 332 EDFHNPDGTMRSADDITAMWKAWNIKPEQQVSFYXGTGWRASETFMYARAMGWKNVSVYD 391
Query: 356 GSWTEWGAQPDTPVET 371
G W EW + P PV T
Sbjct: 392 GGWYEWSSDPKNPVAT 407
>pdb|2WLX|A Chain A, Putative Thiosulfate Sulfurtransferase Ynje
Length = 423
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 134/316 (42%), Gaps = 51/316 (16%)
Query: 75 EPVVSVDWLHANLREP---------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDV 125
E +V WLH +L++ D KV++A+W P + Y ++HIPGA + D
Sbjct: 123 EQLVYPQWLH-DLQQGKEVTAKPAGDWKVIEAAWGAP-------KLYLISHIPGADYIDT 174
Query: 126 DGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDR 185
+ V + L + + S+E A ++ G+ + +++Y G+ +++AARV + G
Sbjct: 175 NEV--ESEPLWNKV-SDEQLKAMLAKHGIRHDTTVILY-GRDVYAAARVAQIMLYAGVKD 230
Query: 186 VWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKF--QPH 243
V +LDGG W +G VE +V F K QP
Sbjct: 231 VRLLDGGWQTWSDAGLPVERGTPP-------------------KVKAEPDFGVKIPAQPQ 271
Query: 244 LIWTLEQVKRNIEEGTYQLVDARSKARFDGDAP-----EPR---KGIRSGHVPGSKCIPF 295
L+ +EQ + + LV RS F G +P+ G R GH GS
Sbjct: 272 LMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHA-GSDSTHM 330
Query: 296 PQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYD 355
+ T+ AD++ ++ I E+ V GTG A + +G +V+VYD
Sbjct: 331 EDFHNPDGTMRSADDITAMWKAWNIKPEQQVSFYXGTGWRASETFMYARAMGWKNVSVYD 390
Query: 356 GSWTEWGAQPDTPVET 371
G W EW + P PV T
Sbjct: 391 GGWYEWSSDPKNPVAT 406
>pdb|3P3A|A Chain A, Crystal Structure Of A Putative Thiosulfate
Sulfurtransferase From Mycobacterium Thermoresistible
pdb|3P3A|B Chain B, Crystal Structure Of A Putative Thiosulfate
Sulfurtransferase From Mycobacterium Thermoresistible
Length = 320
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 126/307 (41%), Gaps = 51/307 (16%)
Query: 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTN 134
E +V+ DWL +NL P L ++++ DE Y HIPGA+ +D D
Sbjct: 40 ERLVTADWLASNLGRPGLVIVES-----DED---VLLYDTGHIPGAV--KIDWHTDLNDP 89
Query: 135 LPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLP 194
+ E FAA + G+ D +V+Y K + AA W+F +FGH V +LDGG
Sbjct: 90 AVRDYINGEQFAALMDRKGVTRDDTVVIYGDKSNWWAAYAMWVFHLFGHPDVRLLDGGRD 149
Query: 195 RWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRN 254
W ++G D +V Q G + P + + V R
Sbjct: 150 LWVSTGRDTTL------------------EVPTRQTSGYPVVERNDAPIRAFK-DDVLRV 190
Query: 255 IEEGTYQLVDARSKARFDG------DAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPA 308
+ G L+D RS + G D PE +R GH+P + +P+ S+
Sbjct: 191 L--GKEPLIDVRSPQEYTGERTHMPDYPE-EGALRGGHIPTAVSVPW------SKAAYDD 241
Query: 309 DELKKRFEQEGI-----SLEKPVVTACGTGVTACILALGLNRLGKH-DVAVYDGSWTEWG 362
+ R E E I +KP+V C G + L L H +V YDGSWTEWG
Sbjct: 242 GRFRARAELEEIYGFVKPDDKPIVY-CRIGERSSHTWFVLTYLLGHPNVRNYDGSWTEWG 300
Query: 363 AQPDTPV 369
P+
Sbjct: 301 NAVRVPI 307
>pdb|2WLR|A Chain A, Putative Thiosulfate Sulfurtransferase Ynje
Length = 423
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 129/316 (40%), Gaps = 51/316 (16%)
Query: 75 EPVVSVDWLHANLREP---------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDV 125
E +V WLH +L++ D KV++A+W P + Y ++HIPGA + D
Sbjct: 123 EQLVYPQWLH-DLQQGKEVTAKPAGDWKVIEAAWGAP-------KLYLISHIPGADYIDT 174
Query: 126 DGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDR 185
+ V + L + + S+E A ++ G+ + +++Y G+ +++AARV + G
Sbjct: 175 NEV--ESEPLWNKV-SDEQLKAXLAKHGIRHDTTVILY-GRDVYAAARVAQIXLYAGVKD 230
Query: 186 VWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKF--QPH 243
V +LDGG W +G VE +V F K QP
Sbjct: 231 VRLLDGGWQTWSDAGLPVERGTPP-------------------KVKAEPDFGVKIPAQPQ 271
Query: 244 LIWTLEQVKRNIEEGTYQLVDARSKARFDGDAP-----EPR---KGIRSGHVPGSKCIPF 295
L EQ + + LV RS F G +P+ G R GH GS
Sbjct: 272 LXLDXEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHA-GSDSTHX 330
Query: 296 PQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYD 355
+ T AD++ ++ I E+ V GTG A G +V+VYD
Sbjct: 331 EDFHNPDGTXRSADDITAXWKAWNIKPEQQVSFYXGTGWRASETFXYARAXGWKNVSVYD 390
Query: 356 GSWTEWGAQPDTPVET 371
G W EW + P PV T
Sbjct: 391 GGWYEWSSDPKNPVAT 406
>pdb|1OKG|A Chain A, 3-Mercaptopyruvate Sulfurtransferase From Leishmania Major
Length = 373
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 118/299 (39%), Gaps = 47/299 (15%)
Query: 91 DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADR---TTNLPHMLPSEEAFAA 147
+ +++D + + + Q Y H+ A+ DVD + T+ H LP F
Sbjct: 27 EYRIVDCRYSLKIKDHGSIQ-YAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPXAEFID 85
Query: 148 AVSALGLENKDGLVVYDGK-GIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESS 206
A G + ++ YD + G R+WW G D +V++GG +A+G + ES
Sbjct: 86 WCXANGXAGELPVLCYDDECGAXGGCRLWWXLNSLGAD-AYVINGGFQACKAAGLEXESG 144
Query: 207 ASGDAILKASAASEAIEKVYQGQVVGPTT---FQTKFQPHLIWTLEQVKRNIEEGTYQ-- 261
+ P T F+T FQ H + ++E Q
Sbjct: 145 EPS-------------------SLPRPATHWPFKTAFQHHYL---------VDEIPPQAI 176
Query: 262 LVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQML---DASQTLLPADELKKRF--- 315
+ DARS RF GH+ G++ +P+ L + L +E++
Sbjct: 177 ITDARSADRFASTVRPYAADKXPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIXTV 236
Query: 316 -EQEGISLE-KPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 372
+ G + + V + G+GVTACI ++ LG +Y GSW+E+ P+ S
Sbjct: 237 VQGAGDAADLSSFVFSXGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIXRS 295
>pdb|2KL3|A Chain A, Solution Nmr Structure Of The Rhodanese-Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437a
Length = 132
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 19/89 (21%)
Query: 112 YQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSA 171
Y HI GA+ ++ + DR ++ LE + VY G G
Sbjct: 32 YNDGHIMGAMAMPIEDLVDRASS------------------SLEKSRDIYVY-GAGDEQT 72
Query: 172 ARVWWMFRVFGHDRVWVLDGGLPRWRASG 200
++ + R G + V L GGL W+A G
Sbjct: 73 SQAVNLLRSAGFEHVSELKGGLAAWKAIG 101
>pdb|1J0C|A Chain A, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|B Chain B, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|C Chain C, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|D Chain D, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0D|A Chain A, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|B Chain B, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|C Chain C, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|D Chain D, Acc Deaminase Mutant Complexed With Acc
Length = 341
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 308 ADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKH-DVAVYDGSWTEWGAQPD 366
ADE+ + + GI +K +V C TG T + G+ + G+ DV D S+T +
Sbjct: 179 ADEVINQEVELGIKFDK-IVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQ 237
Query: 367 T 367
T
Sbjct: 238 T 238
>pdb|1J0E|A Chain A, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|B Chain B, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|C Chain C, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|D Chain D, Acc Deaminase Mutant Reacton Intermediate
Length = 341
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 308 ADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKH-DVAVYDGSWTEWGAQPD 366
ADE+ + + GI +K +V C TG T + G+ + G+ DV D S+T +
Sbjct: 179 ADEVINQEVELGIKFDK-IVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQ 237
Query: 367 T 367
T
Sbjct: 238 T 238
>pdb|1F2D|A Chain A, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|B Chain B, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|C Chain C, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|D Chain D, 1-Aminocyclopropane-1-Carboxylate Deaminase
Length = 341
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 308 ADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKH-DVAVYDGSWTEWGAQPD 366
ADE+ + + GI +K +V C TG T + G+ + G+ DV D S+T +
Sbjct: 179 ADEVINQEVELGIKFDK-IVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQ 237
Query: 367 T 367
T
Sbjct: 238 T 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,196,582
Number of Sequences: 62578
Number of extensions: 465975
Number of successful extensions: 1459
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1369
Number of HSP's gapped (non-prelim): 42
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)