Query 017338
Match_columns 373
No_of_seqs 411 out of 2345
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 07:42:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02723 3-mercaptopyruvate su 100.0 1.2E-62 2.6E-67 472.2 29.4 314 59-372 5-318 (320)
2 COG2897 SseA Rhodanese-related 100.0 7.2E-61 1.6E-65 445.0 26.7 277 73-373 8-284 (285)
3 PRK11493 sseA 3-mercaptopyruva 100.0 2.7E-54 5.9E-59 407.9 29.3 277 75-373 4-281 (281)
4 PRK09629 bifunctional thiosulf 100.0 1E-52 2.2E-57 431.4 29.9 266 74-372 7-272 (610)
5 KOG1529 Mercaptopyruvate sulfu 100.0 1.3E-50 2.8E-55 367.8 23.0 278 74-371 3-284 (286)
6 cd01445 TST_Repeats Thiosulfat 99.9 6.9E-25 1.5E-29 185.5 12.8 119 78-197 1-137 (138)
7 cd01445 TST_Repeats Thiosulfat 99.9 4.1E-23 8.9E-28 174.6 12.7 117 246-362 1-137 (138)
8 cd01449 TST_Repeat_2 Thiosulfa 99.9 4.1E-23 8.9E-28 169.8 12.1 118 246-363 1-118 (118)
9 cd01448 TST_Repeat_1 Thiosulfa 99.9 3.7E-22 8.1E-27 165.2 13.7 122 77-200 1-122 (122)
10 PRK00142 putative rhodanese-re 99.9 7.9E-23 1.7E-27 195.1 6.4 194 75-364 13-212 (314)
11 cd01519 RHOD_HSP67B2 Member of 99.9 6.4E-22 1.4E-26 159.5 8.7 104 247-363 2-106 (106)
12 cd01448 TST_Repeat_1 Thiosulfa 99.9 1.3E-21 2.9E-26 161.9 10.8 115 246-364 2-121 (122)
13 PLN02160 thiosulfate sulfurtra 99.9 1.7E-21 3.8E-26 164.3 10.9 113 244-372 15-129 (136)
14 KOG1530 Rhodanese-related sulf 99.9 9.9E-22 2.1E-26 158.6 8.4 115 242-370 21-135 (136)
15 PRK11493 sseA 3-mercaptopyruva 99.9 2.5E-21 5.5E-26 183.0 10.8 127 244-372 5-136 (281)
16 cd01519 RHOD_HSP67B2 Member of 99.8 5.6E-21 1.2E-25 154.0 9.9 104 79-198 2-106 (106)
17 TIGR03865 PQQ_CXXCW PQQ-depend 99.8 1.4E-20 3E-25 163.4 12.8 115 75-203 35-162 (162)
18 cd01518 RHOD_YceA Member of th 99.8 4.1E-21 8.9E-26 153.7 8.7 99 245-363 3-101 (101)
19 cd01449 TST_Repeat_2 Thiosulfa 99.8 8E-21 1.7E-25 156.2 10.1 107 78-198 1-118 (118)
20 TIGR03865 PQQ_CXXCW PQQ-depend 99.8 1.6E-20 3.4E-25 163.0 12.3 122 240-369 32-162 (162)
21 cd01533 4RHOD_Repeat_2 Member 99.8 1.7E-20 3.7E-25 152.3 9.7 96 245-364 11-108 (109)
22 cd01533 4RHOD_Repeat_2 Member 99.8 2.6E-20 5.6E-25 151.2 10.2 99 75-200 9-109 (109)
23 PLN02723 3-mercaptopyruvate su 99.8 2.6E-20 5.6E-25 179.1 11.5 120 241-372 19-152 (320)
24 cd01527 RHOD_YgaP Member of th 99.8 2.3E-20 5E-25 148.7 8.3 97 245-369 3-99 (99)
25 cd01520 RHOD_YbbB Member of th 99.8 2.8E-20 6E-25 155.5 8.7 105 246-363 1-126 (128)
26 PRK09629 bifunctional thiosulf 99.8 3.8E-20 8.2E-25 190.9 11.2 117 244-372 9-130 (610)
27 cd01518 RHOD_YceA Member of th 99.8 5.8E-20 1.3E-24 147.0 9.4 99 76-197 2-100 (101)
28 cd01520 RHOD_YbbB Member of th 99.8 9.4E-20 2E-24 152.3 10.5 110 78-198 1-126 (128)
29 PRK00162 glpE thiosulfate sulf 99.8 1.1E-19 2.3E-24 147.3 9.6 101 245-372 6-106 (108)
30 cd01525 RHOD_Kc Member of the 99.8 2.3E-19 4.9E-24 144.4 10.3 102 78-197 1-104 (105)
31 smart00450 RHOD Rhodanese Homo 99.8 1.8E-19 3.8E-24 142.2 9.0 98 258-368 3-100 (100)
32 cd01526 RHOD_ThiF Member of th 99.8 9.7E-20 2.1E-24 150.9 7.6 105 244-364 8-114 (122)
33 TIGR03167 tRNA_sel_U_synt tRNA 99.8 1.1E-18 2.4E-23 166.0 15.5 191 91-337 2-210 (311)
34 cd01527 RHOD_YgaP Member of th 99.8 4.3E-19 9.4E-24 141.3 10.1 97 77-203 3-99 (99)
35 COG2897 SseA Rhodanese-related 99.8 4.2E-19 9.1E-24 165.6 11.1 120 241-372 8-139 (285)
36 cd01525 RHOD_Kc Member of the 99.8 2.8E-19 6.1E-24 143.8 8.5 99 246-362 1-104 (105)
37 cd01534 4RHOD_Repeat_3 Member 99.8 3.1E-19 6.7E-24 141.2 8.5 93 246-363 1-95 (95)
38 PRK08762 molybdopterin biosynt 99.8 1.6E-18 3.5E-23 170.4 15.2 104 76-207 3-106 (376)
39 cd01447 Polysulfide_ST Polysul 99.8 1E-19 2.2E-24 145.7 5.2 102 246-364 1-102 (103)
40 PRK11784 tRNA 2-selenouridine 99.8 2.6E-18 5.7E-23 165.7 15.6 168 79-289 4-187 (345)
41 PF00581 Rhodanese: Rhodanese- 99.8 2E-19 4.3E-24 145.8 6.2 105 247-363 1-112 (113)
42 cd01523 RHOD_Lact_B Member of 99.8 6.6E-19 1.4E-23 140.6 8.8 98 246-362 1-99 (100)
43 PRK00162 glpE thiosulfate sulf 99.8 1.5E-18 3.2E-23 140.6 10.8 103 75-206 4-106 (108)
44 cd01528 RHOD_2 Member of the R 99.8 7.6E-19 1.7E-23 140.5 9.0 96 246-364 2-99 (101)
45 cd01522 RHOD_1 Member of the R 99.8 5E-19 1.1E-23 145.6 7.9 105 246-366 1-107 (117)
46 cd01534 4RHOD_Repeat_3 Member 99.8 8E-19 1.7E-23 138.8 8.8 93 78-198 1-95 (95)
47 cd01521 RHOD_PspE2 Member of t 99.8 1.5E-18 3.3E-23 141.1 10.2 101 75-203 7-110 (110)
48 cd01521 RHOD_PspE2 Member of t 99.8 6.2E-19 1.3E-23 143.4 7.8 99 244-369 8-110 (110)
49 cd01447 Polysulfide_ST Polysul 99.8 1.3E-18 2.7E-23 139.3 9.1 102 78-200 1-103 (103)
50 cd01444 GlpE_ST GlpE sulfurtra 99.8 5.1E-19 1.1E-23 139.8 6.7 91 246-362 2-95 (96)
51 smart00450 RHOD Rhodanese Homo 99.8 2.7E-18 5.9E-23 135.4 10.4 99 89-202 2-100 (100)
52 PLN02160 thiosulfate sulfurtra 99.8 5.6E-18 1.2E-22 142.9 12.5 115 75-207 14-130 (136)
53 cd01524 RHOD_Pyr_redox Member 99.8 2.4E-18 5.2E-23 134.7 9.0 88 247-362 2-89 (90)
54 cd01528 RHOD_2 Member of the R 99.8 3.6E-18 7.7E-23 136.6 9.3 94 78-198 2-98 (101)
55 cd01529 4RHOD_Repeats Member o 99.8 2.5E-18 5.4E-23 136.2 8.2 87 257-363 10-96 (96)
56 PF00581 Rhodanese: Rhodanese- 99.8 4.9E-18 1.1E-22 137.6 9.7 106 79-199 1-113 (113)
57 cd01526 RHOD_ThiF Member of th 99.7 4.9E-18 1.1E-22 140.7 9.5 109 74-202 6-117 (122)
58 cd01530 Cdc25 Cdc25 phosphatas 99.7 2.5E-18 5.5E-23 142.2 7.6 98 245-362 3-120 (121)
59 cd01530 Cdc25 Cdc25 phosphatas 99.7 7.1E-18 1.5E-22 139.5 9.3 98 77-197 3-120 (121)
60 KOG1530 Rhodanese-related sulf 99.7 1.3E-17 2.8E-22 134.8 10.4 115 74-204 21-135 (136)
61 cd01523 RHOD_Lact_B Member of 99.7 1.6E-17 3.4E-22 132.6 9.9 98 78-197 1-99 (100)
62 cd01535 4RHOD_Repeat_4 Member 99.7 8.7E-18 1.9E-22 143.3 8.8 87 259-372 11-97 (145)
63 cd01529 4RHOD_Repeats Member o 99.7 1.6E-17 3.4E-22 131.6 9.1 94 80-198 3-96 (96)
64 cd01524 RHOD_Pyr_redox Member 99.7 1.5E-17 3.4E-22 130.1 8.3 89 78-197 1-89 (90)
65 cd01444 GlpE_ST GlpE sulfurtra 99.7 1.9E-17 4.2E-22 130.7 8.3 91 78-197 2-95 (96)
66 cd01522 RHOD_1 Member of the R 99.7 2.9E-17 6.3E-22 135.1 8.9 103 78-199 1-105 (117)
67 cd01531 Acr2p Eukaryotic arsen 99.7 3E-17 6.5E-22 134.1 8.6 99 245-364 3-112 (113)
68 cd01535 4RHOD_Repeat_4 Member 99.7 5.3E-17 1.1E-21 138.4 10.3 96 83-207 2-98 (145)
69 cd01532 4RHOD_Repeat_1 Member 99.7 1.4E-17 2.9E-22 131.0 5.7 86 254-363 5-92 (92)
70 PRK08762 molybdopterin biosynt 99.7 3.6E-17 7.7E-22 160.9 9.8 102 245-372 4-105 (376)
71 cd01531 Acr2p Eukaryotic arsen 99.7 5E-17 1.1E-21 132.7 9.0 101 76-199 2-112 (113)
72 cd00158 RHOD Rhodanese Homolog 99.7 1.4E-17 3.1E-22 129.0 5.5 87 252-362 3-89 (89)
73 cd01532 4RHOD_Repeat_1 Member 99.7 4.9E-17 1.1E-21 127.9 8.5 87 86-198 5-92 (92)
74 TIGR02981 phageshock_pspE phag 99.7 6.5E-17 1.4E-21 129.2 7.5 80 259-363 18-97 (101)
75 COG0607 PspE Rhodanese-related 99.7 9.4E-17 2E-21 129.8 8.5 96 252-372 13-109 (110)
76 PRK01415 hypothetical protein; 99.7 1.5E-16 3.2E-21 146.0 9.5 102 242-364 110-212 (247)
77 PRK10287 thiosulfate:cyanide s 99.7 1E-16 2.2E-21 128.6 7.3 80 258-362 19-98 (104)
78 cd01443 Cdc25_Acr2p Cdc25 enzy 99.7 2E-16 4.4E-21 129.1 9.0 99 76-197 2-112 (113)
79 cd00158 RHOD Rhodanese Homolog 99.7 2.1E-16 4.5E-21 122.4 7.5 88 83-197 2-89 (89)
80 cd01443 Cdc25_Acr2p Cdc25 enzy 99.7 3.1E-16 6.8E-21 128.0 8.6 98 245-363 3-113 (113)
81 cd01446 DSP_MapKP N-terminal r 99.7 2.1E-16 4.6E-21 132.6 7.4 109 77-198 1-126 (132)
82 PRK00142 putative rhodanese-re 99.6 1.2E-15 2.7E-20 145.7 11.1 102 73-198 109-211 (314)
83 PRK01415 hypothetical protein; 99.6 1.1E-15 2.3E-20 140.3 9.9 103 73-199 109-212 (247)
84 TIGR02981 phageshock_pspE phag 99.6 1.9E-15 4.2E-20 120.7 7.8 80 90-197 17-96 (101)
85 PRK05320 rhodanese superfamily 99.6 1.8E-15 4E-20 140.6 8.6 101 244-364 110-216 (257)
86 PRK10287 thiosulfate:cyanide s 99.6 4.6E-15 9.9E-20 119.0 9.0 81 90-198 19-99 (104)
87 PRK07878 molybdopterin biosynt 99.6 1.8E-15 3.9E-20 149.3 8.2 99 242-364 285-384 (392)
88 COG0607 PspE Rhodanese-related 99.6 1.5E-14 3.3E-19 116.8 10.0 98 81-205 10-108 (110)
89 PRK05320 rhodanese superfamily 99.6 1E-14 2.2E-19 135.6 10.2 101 74-198 108-215 (257)
90 cd01446 DSP_MapKP N-terminal r 99.6 4.6E-15 9.9E-20 124.5 7.0 104 246-364 2-127 (132)
91 PRK07878 molybdopterin biosynt 99.6 1.4E-14 3.1E-19 143.0 10.6 102 74-202 285-387 (392)
92 PRK07411 hypothetical protein; 99.6 6.7E-15 1.5E-19 145.0 8.1 99 244-364 282-382 (390)
93 PRK05597 molybdopterin biosynt 99.5 1.9E-14 4.1E-19 140.3 8.1 95 243-363 260-354 (355)
94 PRK11784 tRNA 2-selenouridine 99.5 1.9E-14 4.1E-19 139.0 7.5 105 248-367 5-131 (345)
95 TIGR03167 tRNA_sel_U_synt tRNA 99.5 4.1E-14 9E-19 134.8 7.0 98 259-369 2-119 (311)
96 PRK05597 molybdopterin biosynt 99.5 9.6E-14 2.1E-18 135.3 8.8 96 75-199 260-355 (355)
97 KOG1529 Mercaptopyruvate sulfu 99.4 3.9E-13 8.4E-18 123.2 10.2 126 244-372 5-137 (286)
98 PRK07411 hypothetical protein; 99.4 3.5E-13 7.6E-18 132.9 9.2 104 74-202 280-385 (390)
99 PRK05600 thiamine biosynthesis 99.4 2E-13 4.4E-18 133.4 6.7 94 245-359 272-369 (370)
100 PRK05600 thiamine biosynthesis 99.3 6.8E-12 1.5E-16 122.7 8.0 94 77-194 272-369 (370)
101 COG1054 Predicted sulfurtransf 99.2 5.7E-11 1.2E-15 109.6 7.7 102 243-364 112-213 (308)
102 PRK01269 tRNA s(4)U8 sulfurtra 99.1 4.4E-11 9.6E-16 121.2 4.5 73 258-356 406-482 (482)
103 COG1054 Predicted sulfurtransf 99.1 2.6E-10 5.7E-15 105.3 7.4 117 59-198 96-212 (308)
104 KOG3772 M-phase inducer phosph 98.9 1.7E-09 3.8E-14 101.4 6.9 101 74-199 154-276 (325)
105 KOG2017 Molybdopterin synthase 98.9 2E-09 4.2E-14 101.0 6.2 105 241-365 314-420 (427)
106 KOG3772 M-phase inducer phosph 98.8 6.2E-09 1.4E-13 97.7 7.0 98 244-364 156-276 (325)
107 PRK01269 tRNA s(4)U8 sulfurtra 98.8 1E-08 2.2E-13 104.1 7.6 72 90-190 406-481 (482)
108 KOG2017 Molybdopterin synthase 98.4 2.1E-07 4.6E-12 87.5 4.9 102 75-199 316-419 (427)
109 COG5105 MIH1 Mitotic inducer, 98.2 2.9E-06 6.3E-11 78.9 7.0 99 75-198 241-357 (427)
110 COG5105 MIH1 Mitotic inducer, 97.7 8.2E-05 1.8E-09 69.4 7.1 97 244-363 242-357 (427)
111 KOG1717 Dual specificity phosp 96.4 0.0019 4E-08 59.2 2.5 106 77-199 5-124 (343)
112 PF04273 DUF442: Putative phos 96.3 0.023 5E-07 45.9 7.9 85 246-343 15-106 (110)
113 COG2603 Predicted ATPase [Gene 96.3 0.0089 1.9E-07 55.7 6.0 134 91-295 15-168 (334)
114 TIGR01244 conserved hypothetic 95.9 0.048 1E-06 45.7 8.5 94 246-349 15-113 (135)
115 COG2603 Predicted ATPase [Gene 93.5 0.095 2E-06 49.0 4.3 92 258-361 14-126 (334)
116 KOG3636 Uncharacterized conser 91.2 0.78 1.7E-05 45.4 7.5 100 78-197 309-427 (669)
117 COG3453 Uncharacterized protei 91.0 1.1 2.5E-05 36.4 7.0 86 246-344 16-108 (130)
118 KOG0814 Glyoxylase [General fu 89.5 0.14 3.1E-06 44.4 0.8 56 7-65 166-234 (237)
119 KOG1093 Predicted protein kina 89.4 0.071 1.5E-06 54.1 -1.2 96 75-194 621-716 (725)
120 TIGR01244 conserved hypothetic 87.7 3.3 7.1E-05 34.6 7.9 53 143-204 76-129 (135)
121 PF04273 DUF442: Putative phos 86.4 2.6 5.7E-05 34.0 6.3 85 77-180 14-107 (110)
122 KOG1093 Predicted protein kina 84.5 0.21 4.4E-06 50.9 -1.1 94 245-361 623-718 (725)
123 smart00195 DSPc Dual specifici 83.4 3.2 7E-05 34.3 5.9 30 320-349 75-107 (138)
124 PLN02727 NAD kinase 80.4 6.7 0.00015 42.8 8.1 84 245-336 268-354 (986)
125 KOG1717 Dual specificity phosp 80.0 1 2.3E-05 41.7 1.7 100 246-364 6-124 (343)
126 cd00127 DSPc Dual specificity 79.1 6.7 0.00014 32.2 6.3 28 321-348 79-109 (139)
127 COG2453 CDC14 Predicted protei 76.3 8.9 0.00019 33.6 6.6 30 320-349 102-134 (180)
128 PF09992 DUF2233: Predicted pe 66.6 5 0.00011 34.6 2.7 45 152-196 95-143 (170)
129 PF05706 CDKN3: Cyclin-depende 65.0 5.6 0.00012 34.5 2.6 27 321-347 131-159 (168)
130 PTZ00242 protein tyrosine phos 62.4 19 0.00041 31.2 5.5 19 320-338 95-114 (166)
131 PF09992 DUF2233: Predicted pe 62.2 4.8 0.0001 34.7 1.8 43 319-361 96-143 (170)
132 KOG3636 Uncharacterized conser 61.4 21 0.00046 35.7 6.1 85 259-362 326-427 (669)
133 PLN02727 NAD kinase 55.9 41 0.00089 37.0 7.6 87 75-171 266-355 (986)
134 PF00782 DSPc: Dual specificit 54.6 15 0.00032 29.9 3.4 40 309-349 60-102 (133)
135 COG2453 CDC14 Predicted protei 54.5 25 0.00054 30.7 5.0 48 138-185 84-135 (180)
136 PF13350 Y_phosphatase3: Tyros 48.6 29 0.00062 29.7 4.4 42 308-350 110-153 (164)
137 KOG0333 U5 snRNP-like RNA heli 47.8 33 0.00071 35.3 5.1 37 322-359 516-552 (673)
138 smart00195 DSPc Dual specifici 47.7 55 0.0012 26.7 5.9 31 154-184 75-107 (138)
139 PRK02269 ribose-phosphate pyro 46.1 2.4E+02 0.0051 27.2 10.6 88 73-189 104-194 (320)
140 PF01451 LMWPc: Low molecular 45.1 15 0.00033 30.3 2.0 36 326-361 1-41 (138)
141 PRK12361 hypothetical protein; 45.1 64 0.0014 33.5 7.0 42 291-337 146-190 (547)
142 PTZ00393 protein tyrosine phos 45.1 59 0.0013 30.0 5.9 47 137-183 148-197 (241)
143 PTZ00393 protein tyrosine phos 43.7 58 0.0013 30.1 5.7 29 321-349 168-198 (241)
144 COG0062 Uncharacterized conser 43.4 65 0.0014 28.9 5.9 32 323-355 49-83 (203)
145 KOG0333 U5 snRNP-like RNA heli 43.4 41 0.00088 34.6 4.9 55 137-193 497-551 (673)
146 PF03162 Y_phosphatase2: Tyros 42.1 32 0.0007 29.7 3.7 81 93-181 35-115 (164)
147 TIGR01796 CM_mono_aroH monofun 41.0 25 0.00054 28.6 2.5 48 309-356 24-74 (117)
148 TIGR00853 pts-lac PTS system, 40.1 36 0.00077 26.5 3.3 38 323-361 3-44 (95)
149 PTZ00242 protein tyrosine phos 40.0 91 0.002 26.9 6.2 19 155-173 96-114 (166)
150 PRK10310 PTS system galactitol 39.4 60 0.0013 25.1 4.5 37 325-362 4-45 (94)
151 PLN02918 pyridoxine (pyridoxam 37.7 79 0.0017 32.9 6.2 32 157-189 135-168 (544)
152 PF03162 Y_phosphatase2: Tyros 36.9 36 0.00079 29.3 3.2 41 309-349 77-119 (164)
153 smart00226 LMWPc Low molecular 36.3 35 0.00076 28.2 2.9 37 326-362 1-38 (140)
154 PF05706 CDKN3: Cyclin-depende 36.2 44 0.00095 29.1 3.5 53 121-182 104-159 (168)
155 cd00079 HELICc Helicase superf 35.9 94 0.002 24.4 5.4 48 309-358 15-62 (131)
156 PRK09590 celB cellobiose phosp 35.9 38 0.00082 26.9 2.8 37 324-361 2-42 (104)
157 TIGR02689 ars_reduc_gluta arse 35.7 63 0.0014 26.3 4.3 35 325-359 2-37 (126)
158 PF03853 YjeF_N: YjeF-related 35.2 88 0.0019 26.9 5.3 33 320-353 22-57 (169)
159 cd05191 NAD_bind_amino_acid_DH 34.8 1.3E+02 0.0029 22.4 5.7 36 320-355 19-54 (86)
160 PLN03050 pyridoxine (pyridoxam 34.6 51 0.0011 30.5 3.9 30 324-354 61-93 (246)
161 COG2518 Pcm Protein-L-isoaspar 33.9 79 0.0017 28.5 4.8 56 309-364 59-136 (209)
162 cd00127 DSPc Dual specificity 33.6 81 0.0017 25.5 4.7 28 156-183 80-109 (139)
163 PRK12550 shikimate 5-dehydroge 32.7 1E+02 0.0022 29.0 5.7 46 311-357 110-155 (272)
164 PRK12550 shikimate 5-dehydroge 32.5 96 0.0021 29.1 5.5 46 144-191 109-154 (272)
165 cd05564 PTS_IIB_chitobiose_lic 32.4 47 0.001 25.8 2.8 36 325-361 1-40 (96)
166 KOG0330 ATP-dependent RNA heli 31.8 56 0.0012 32.4 3.7 48 309-360 289-336 (476)
167 PF01451 LMWPc: Low molecular 31.6 36 0.00077 28.0 2.2 43 160-204 1-47 (138)
168 KOG3109 Haloacid dehalogenase- 31.0 1.2E+02 0.0026 27.7 5.5 46 139-189 160-205 (244)
169 PLN03049 pyridoxine (pyridoxam 30.3 1.1E+02 0.0024 31.1 5.9 31 323-354 59-92 (462)
170 PF02302 PTS_IIB: PTS system, 29.5 56 0.0012 24.5 2.8 32 325-357 1-37 (90)
171 COG0162 TyrS Tyrosyl-tRNA synt 29.5 58 0.0012 32.5 3.5 54 305-365 18-81 (401)
172 PLN02918 pyridoxine (pyridoxam 29.2 1.2E+02 0.0026 31.6 5.8 31 323-354 135-168 (544)
173 cd05565 PTS_IIB_lactose PTS_II 29.0 49 0.0011 26.0 2.4 37 325-362 2-42 (99)
174 smart00226 LMWPc Low molecular 28.9 70 0.0015 26.3 3.5 43 160-204 1-43 (140)
175 PRK10126 tyrosine phosphatase; 28.4 80 0.0017 26.5 3.8 37 324-361 3-40 (147)
176 PF00782 DSPc: Dual specificit 28.0 86 0.0019 25.2 3.9 41 143-184 60-102 (133)
177 PLN02645 phosphoglycolate phos 27.9 82 0.0018 30.1 4.2 112 76-204 14-135 (311)
178 PRK11391 etp phosphotyrosine-p 27.8 86 0.0019 26.3 3.9 37 324-361 3-40 (144)
179 PRK12549 shikimate 5-dehydroge 27.8 1.4E+02 0.0031 28.1 5.8 34 323-357 127-160 (284)
180 PRK05852 acyl-CoA synthetase; 27.6 1.1E+02 0.0025 31.0 5.6 50 309-359 54-103 (534)
181 PRK12749 quinate/shikimate deh 27.5 1.4E+02 0.0031 28.2 5.8 46 311-357 111-157 (288)
182 PRK12814 putative NADPH-depend 27.4 7.7E+02 0.017 26.2 11.9 35 320-355 320-354 (652)
183 KOG0352 ATP-dependent DNA heli 27.2 53 0.0012 33.0 2.8 42 326-369 258-308 (641)
184 cd05567 PTS_IIB_mannitol PTS_I 27.1 67 0.0014 24.2 2.8 37 324-361 1-42 (87)
185 PF13350 Y_phosphatase3: Tyros 26.9 1.1E+02 0.0024 26.0 4.5 43 142-185 110-153 (164)
186 COG0513 SrmB Superfamily II DN 26.8 1.1E+02 0.0023 31.6 5.2 35 324-359 274-308 (513)
187 smart00404 PTPc_motif Protein 26.7 1.1E+02 0.0025 22.9 4.2 17 322-338 38-55 (105)
188 smart00012 PTPc_DSPc Protein t 26.7 1.1E+02 0.0025 22.9 4.2 17 322-338 38-55 (105)
189 COG3453 Uncharacterized protei 26.6 1.2E+02 0.0025 25.0 4.2 82 76-173 14-102 (130)
190 PF07736 CM_1: Chorismate muta 26.3 40 0.00087 27.5 1.5 47 309-355 24-73 (118)
191 COG0169 AroE Shikimate 5-dehyd 26.3 1.6E+02 0.0034 28.0 5.7 50 309-358 109-160 (283)
192 PF07879 PHB_acc_N: PHB/PHA ac 25.6 86 0.0019 22.6 2.9 29 243-271 17-46 (64)
193 COG0373 HemA Glutamyl-tRNA red 25.5 6.2E+02 0.013 25.5 9.9 117 156-299 177-298 (414)
194 PRK04537 ATP-dependent RNA hel 25.5 1.2E+02 0.0026 31.8 5.2 38 321-359 255-292 (572)
195 PF03610 EIIA-man: PTS system 25.2 2.5E+02 0.0054 22.2 6.1 46 309-356 45-90 (116)
196 TIGR00614 recQ_fam ATP-depende 25.1 1.2E+02 0.0026 30.8 5.0 48 309-359 214-261 (470)
197 PRK11057 ATP-dependent DNA hel 25.1 1.3E+02 0.0028 31.7 5.5 47 309-359 225-271 (607)
198 PRK13530 arsenate reductase; P 24.9 1.2E+02 0.0026 25.0 4.2 36 324-359 4-40 (133)
199 PRK00258 aroE shikimate 5-dehy 24.6 1.7E+02 0.0038 27.3 5.8 41 319-359 118-158 (278)
200 PF00501 AMP-binding: AMP-bind 24.5 1.5E+02 0.0033 28.7 5.6 41 309-349 32-72 (417)
201 TIGR02804 ExbD_2 TonB system t 24.2 2.4E+02 0.0051 22.7 5.8 46 307-354 70-118 (121)
202 PF14566 PTPlike_phytase: Inos 24.1 1.4E+02 0.0031 25.1 4.6 33 302-334 102-135 (149)
203 COG2518 Pcm Protein-L-isoaspar 24.1 2E+02 0.0044 25.9 5.7 58 141-198 57-135 (209)
204 PRK13809 orotate phosphoribosy 24.0 2.5E+02 0.0054 25.2 6.3 53 155-207 116-176 (206)
205 PRK02458 ribose-phosphate pyro 24.0 6.6E+02 0.014 24.2 13.6 89 73-190 108-199 (323)
206 PRK12361 hypothetical protein; 23.7 2.1E+02 0.0046 29.6 6.7 40 140-179 156-199 (547)
207 COG3414 SgaB Phosphotransferas 23.4 1E+02 0.0022 23.9 3.3 26 324-349 2-32 (93)
208 COG0169 AroE Shikimate 5-dehyd 23.4 1.7E+02 0.0037 27.7 5.4 49 142-192 108-159 (283)
209 TIGR01389 recQ ATP-dependent D 23.3 1.4E+02 0.0031 31.2 5.4 47 309-359 213-259 (591)
210 PTZ00110 helicase; Provisional 23.2 1.6E+02 0.0034 30.6 5.6 49 309-359 364-412 (545)
211 PF13242 Hydrolase_like: HAD-h 23.1 1.2E+02 0.0027 21.8 3.6 47 139-191 4-51 (75)
212 cd00115 LMWPc Substituted upda 22.8 98 0.0021 25.5 3.3 37 325-361 2-40 (141)
213 TIGR00640 acid_CoA_mut_C methy 22.5 4.2E+02 0.0091 21.8 7.0 62 137-202 37-107 (132)
214 PRK04837 ATP-dependent RNA hel 22.4 1.5E+02 0.0034 29.4 5.2 36 322-358 254-289 (423)
215 COG0698 RpiB Ribose 5-phosphat 22.2 3.2E+02 0.0068 23.4 6.2 20 322-341 58-77 (151)
216 PRK10499 PTS system N,N'-diace 21.9 1E+02 0.0022 24.5 3.0 26 324-349 4-33 (106)
217 PRK07514 malonyl-CoA synthase; 21.9 1.8E+02 0.0039 29.1 5.7 41 309-349 39-79 (504)
218 COG0514 RecQ Superfamily II DN 21.8 1.4E+02 0.0031 31.3 4.9 38 320-358 227-264 (590)
219 COG2185 Sbm Methylmalonyl-CoA 21.7 2.5E+02 0.0054 23.7 5.4 52 303-358 47-102 (143)
220 PRK12548 shikimate 5-dehydroge 21.4 2.2E+02 0.0047 26.8 5.8 46 311-357 113-159 (289)
221 cd01300 YtcJ_like YtcJ_like me 21.3 1.6E+02 0.0036 29.7 5.3 30 320-349 109-138 (479)
222 PRK11776 ATP-dependent RNA hel 20.9 1.7E+02 0.0037 29.4 5.2 46 310-359 232-277 (460)
223 PRK10565 putative carbohydrate 20.7 1.3E+02 0.0028 31.0 4.4 33 321-354 58-93 (508)
224 PF00733 Asn_synthase: Asparag 20.5 1.3E+02 0.0029 26.8 4.1 36 320-355 14-49 (255)
225 TIGR02691 arsC_pI258_fam arsen 20.4 1.3E+02 0.0027 24.7 3.5 33 326-358 1-34 (129)
226 COG0462 PrsA Phosphoribosylpyr 20.4 5.6E+02 0.012 24.7 8.2 88 73-190 103-193 (314)
227 cd01065 NAD_bind_Shikimate_DH 20.4 2.9E+02 0.0063 22.6 5.9 46 311-357 6-52 (155)
228 KOG0331 ATP-dependent RNA heli 20.4 2E+02 0.0043 29.8 5.5 50 309-359 327-376 (519)
229 TIGR01587 cas3_core CRISPR-ass 20.2 1.5E+02 0.0034 28.4 4.6 48 309-358 210-258 (358)
230 TIGR03089 conserved hypothetic 20.2 2.3E+02 0.005 25.5 5.5 40 309-348 38-78 (227)
231 TIGR02190 GlrX-dom Glutaredoxi 20.0 1.8E+02 0.0038 21.2 3.9 30 155-184 5-34 (79)
No 1
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=100.00 E-value=1.2e-62 Score=472.17 Aligned_cols=314 Identities=86% Similarity=1.407 Sum_probs=283.9
Q ss_pred hcccccCCCCCCCCCCCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCC
Q 017338 59 AAGRRADYSTLSVSPKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHM 138 (373)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~ 138 (373)
.+.+.+.+++.+.++...+||++||++++++++++|||+||+++.+.|++.++|..||||||+|+|+..+.+.....+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~ 84 (320)
T PLN02723 5 GSETKANYSTQSISTNEPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHM 84 (320)
T ss_pred chhhcccCcccccccCCceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCC
Confidence 56777888888888888999999999999988899999999888877876678999999999999998887766778899
Q ss_pred CCCHHHHHHHHHHcCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcccCCCcchhHhhhhh
Q 017338 139 LPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAA 218 (373)
Q Consensus 139 l~~~e~~~~~l~~~gi~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~~~~~~~~~~~~~~ 218 (373)
+|+++.|++.|+.+||+++++|||||+.|.+.++|++|+|+++||++|++||||+.+|+++|+|+++..+.+++++..++
T Consensus 85 lp~~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~~~~~~~~~~~~ 164 (320)
T PLN02723 85 LPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSASGDAILKASAA 164 (320)
T ss_pred CCCHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCCCcccccccccc
Confidence 99999999999999999999999999988888899999999999999999999999999999999987654555555555
Q ss_pred HHHHHHhhcCcccCCcceeeccCCccccCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccc
Q 017338 219 SEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQM 298 (373)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l 298 (373)
.+.+++.+.++.+.+.+|...+++.++++.+++.+++.+++.+|||+|++.||.|...++....+.||||||+|+|+.++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~ 244 (320)
T PLN02723 165 SEAIEKVYQGQTVSPITFQTKFQPHLVWTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQM 244 (320)
T ss_pred ccccccccccCCCCCCcccccCCccceecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHh
Confidence 56677777666677788988899999999999999998778899999999999998777666678999999999999998
Q ss_pred cccCCCCCCHHHHHHHHHHcCCCCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHhcCCCCCCcCC
Q 017338 299 LDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 372 (373)
Q Consensus 299 ~~~~~~~~~~~~l~~~~~~~gi~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~~g~Pv~~~ 372 (373)
.+.++.|++.++|++++.+.|++++++||+||++|.+|+.++++|+.+||+||++|+|||.+|...+++|++++
T Consensus 245 ~~~~~~~~~~~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~~ 318 (320)
T PLN02723 245 LDSSQTLLPAEELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVATS 318 (320)
T ss_pred cCCCCCCCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccCC
Confidence 88888999999999999999999999999999999999999999999999999999999999999989999976
No 2
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-61 Score=444.97 Aligned_cols=277 Identities=42% Similarity=0.807 Sum_probs=257.0
Q ss_pred CCCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHc
Q 017338 73 PKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (373)
Q Consensus 73 ~~~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~ 152 (373)
+...+||++||.+++++++++++|+|+..++..+ .++|..||||||++++++...+....+++|+|++++|+++|+.+
T Consensus 8 ~~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~--~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~ 85 (285)
T COG2897 8 SSEFLVSPDWLAENLDDPAVVIVDARIILPDPDD--AEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGEL 85 (285)
T ss_pred CcceEEcHHHHHhhccccccccCceEEEeCCcch--HHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHc
Confidence 4567999999999999988999999988887654 58999999999999999987777777899999999999999999
Q ss_pred CCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcccCCCcchhHhhhhhHHHHHHhhcCcccC
Q 017338 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVG 232 (373)
Q Consensus 153 gi~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (373)
||+++++||+|++.+...|+|+||+|+++||+||++||||+.+|+++|+|+++.++ .+.
T Consensus 86 GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~---------------------~~~ 144 (285)
T COG2897 86 GIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPP---------------------EPP 144 (285)
T ss_pred CCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCC---------------------CCC
Confidence 99999999999999999999999999999999999999999999999999998653 345
Q ss_pred CcceeeccCCccccCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHH
Q 017338 233 PTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELK 312 (373)
Q Consensus 233 ~~~~~~~~~~~~~is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~ 312 (373)
+..|..+++...+++.++++..++.+..+|||+|++++|.|+..+|.... .||||||+|+||.++.++...|++.++++
T Consensus 145 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~-~GHIPGAiNipw~~~~~~~~~~~~~~~~~ 223 (285)
T COG2897 145 PTTFSAKYNVKAVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGK-AGHIPGAINIPWTDLVDDGGLFKSPEEIA 223 (285)
T ss_pred CccccccCCccccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCC-CCCCCCCcCcCHHHHhcCCCccCcHHHHH
Confidence 67888899999999999999999988899999999999999999987664 89999999999999999778899999999
Q ss_pred HHHHHcCCCCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHhcCCCCCCcCCC
Q 017338 313 KRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETSS 373 (373)
Q Consensus 313 ~~~~~~gi~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~~g~Pv~~~~ 373 (373)
.+++..|++++++||+||++|.+|+..+++|+.+|++++++|||||.||.+..+.||++|+
T Consensus 224 ~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g~ 284 (285)
T COG2897 224 RLYADAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETGE 284 (285)
T ss_pred HHHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccCC
Confidence 9998999999999999999999999999999999999999999999999999999999985
No 3
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=100.00 E-value=2.7e-54 Score=407.93 Aligned_cols=277 Identities=40% Similarity=0.811 Sum_probs=242.7
Q ss_pred CCcccHHHHHHhcCCCCeEEEEeecCCCCCC-CCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 017338 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQ-RNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (373)
Q Consensus 75 ~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~-r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~g 153 (373)
..+|+++||++++++++++|||+|+...... ++...+|..||||||+|+|+..+.......++++|+++.|+++++.+|
T Consensus 4 ~~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 83 (281)
T PRK11493 4 TWFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELG 83 (281)
T ss_pred CcccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcC
Confidence 4689999999999998999999985332221 122478999999999999998876666667789999999999999999
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcccCCCcchhHhhhhhHHHHHHhhcCcccCC
Q 017338 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGP 233 (373)
Q Consensus 154 i~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (373)
++++++||+||..+.+.+++++|+|+.+||++|++|+||+.+|+++|+|+++..+ .+.+
T Consensus 84 i~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~---------------------~~~~ 142 (281)
T PRK11493 84 VNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAV---------------------ELPE 142 (281)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCC---------------------CCCC
Confidence 9999999999997776789999999999999999999999999999999988753 2345
Q ss_pred cceeeccCCccccCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHH
Q 017338 234 TTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKK 313 (373)
Q Consensus 234 ~~~~~~~~~~~~is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~ 313 (373)
.+|....++..+++.+++...+.+++.+|||+|+++||.|...++....+.||||||+|+|+.++.+ .+.|+++++|++
T Consensus 143 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~-~~~~~~~~~l~~ 221 (281)
T PRK11493 143 GEFNAAFNPEAVVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVR-EGELKTTDELDA 221 (281)
T ss_pred CcccccCCccceecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcC-CCCcCCHHHHHH
Confidence 6777777788889999999888777789999999999999776665556789999999999999875 457899999999
Q ss_pred HHHHcCCCCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHhcCCCCCCcCCC
Q 017338 314 RFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETSS 373 (373)
Q Consensus 314 ~~~~~gi~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~~g~Pv~~~~ 373 (373)
.|.+.|++++++||+||++|.+|+.++++|+.+||+||++|+|||.+|....++|++++.
T Consensus 222 ~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~~ 281 (281)
T PRK11493 222 IFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPAK 281 (281)
T ss_pred HHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCCC
Confidence 999999999999999999999999999999999999999999999999986599999874
No 4
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=1e-52 Score=431.41 Aligned_cols=266 Identities=27% Similarity=0.463 Sum_probs=238.1
Q ss_pred CCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 017338 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (373)
Q Consensus 74 ~~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~g 153 (373)
..++||++||++++++++++|||+| +.++|..||||||+|+|++.+........+++|+.++|++.++++|
T Consensus 7 ~~~lIs~~eL~~~l~~~~vvIIDvR---------~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lG 77 (610)
T PRK09629 7 LSLVIEPNDLLERLDAPELILVDLT---------SSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELG 77 (610)
T ss_pred CCceecHHHHHHHhcCCCEEEEECC---------ChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcC
Confidence 4578999999999998899999996 3589999999999999987654444456789999999999999999
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcccCCCcchhHhhhhhHHHHHHhhcCcccCC
Q 017338 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGP 233 (373)
Q Consensus 154 i~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (373)
++++++||+||..+...++|+||+|+++||++|++||||+.+|+++|+|+++..+ ...+
T Consensus 78 I~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~---------------------~~~~ 136 (610)
T PRK09629 78 HNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVP---------------------PVAG 136 (610)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCC---------------------CCCC
Confidence 9999999999998877799999999999999999999999999999999988653 1234
Q ss_pred cceeeccCCccccCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHH
Q 017338 234 TTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKK 313 (373)
Q Consensus 234 ~~~~~~~~~~~~is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~ 313 (373)
.+|....++..+++.+++.+++++++++|||+|+++||.|+... ..+.||||||+|+||..+.+..+.+++++++++
T Consensus 137 ~~~~~~~~~~~~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~---~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~ 213 (610)
T PRK09629 137 GPVTLTLHDEPTATREYLQSRLGAADLAIWDARAPTEYSGEKVV---AAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPE 213 (610)
T ss_pred cceeeccCCcccccHHHHHHhhCCCCcEEEECCCccccCCcccc---cccCCCCCCCeecCHHHhcCCCCCCCCHHHHHH
Confidence 56666777788999999999998878899999999999987542 237899999999999988877788999999999
Q ss_pred HHHHcCCCCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHhcCCCCCCcCC
Q 017338 314 RFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 372 (373)
Q Consensus 314 ~~~~~gi~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~~g~Pv~~~ 372 (373)
++.+.|++++++||+||++|.+|+.++++|+.+||+||++|||||.+|.+.+++|+++.
T Consensus 214 ~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~ 272 (610)
T PRK09629 214 ILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVP 272 (610)
T ss_pred HHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccC
Confidence 99999999999999999999999999999999999999999999999999888999864
No 5
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=100.00 E-value=1.3e-50 Score=367.77 Aligned_cols=278 Identities=45% Similarity=0.855 Sum_probs=254.3
Q ss_pred CCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 017338 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (373)
Q Consensus 74 ~~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~g 153 (373)
...+|+++|+.+++++.+++|||+.|+++..+|+...||..-|||||++|+++.+.+..++.++|+|..+.|++.++.+|
T Consensus 3 ~~~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lG 82 (286)
T KOG1529|consen 3 VDSIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLG 82 (286)
T ss_pred cccccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcC
Confidence 35789999999999998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEcC--CCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcccCCCcchhHhhhhhHHHHHHhhcCccc
Q 017338 154 LENKDGLVVYDG--KGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVV 231 (373)
Q Consensus 154 i~~~~~VVvy~~--~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (373)
+++++.||||+. .|+.+|+|+||+|+.+||++|.+||||+.+|+++|+|++++.... ..
T Consensus 83 i~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~~~-------------------p~ 143 (286)
T KOG1529|consen 83 VDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKVET-------------------PY 143 (286)
T ss_pred CCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccccccC-------------------CC
Confidence 999999999998 888899999999999999999999999999999999999986310 00
Q ss_pred CCcceeeccCCccccCHHHHHHH-hhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHH
Q 017338 232 GPTTFQTKFQPHLIWTLEQVKRN-IEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADE 310 (373)
Q Consensus 232 ~~~~~~~~~~~~~~is~~el~~~-~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~ 310 (373)
.+..+...+++..+++.+++..+ ...+++++||+|+..+|.|+.++|+.+...||||||+|+|+.++.+.++..+++++
T Consensus 144 ~~~~~~~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~ed 223 (286)
T KOG1529|consen 144 SPIVFVASLDNSILATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAED 223 (286)
T ss_pred CCccchhhcchHHHHHHhhccccccccccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccccccCCHHH
Confidence 34455567788888999998776 66778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHh-cCCCCCCcC
Q 017338 311 LKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWG-AQPDTPVET 371 (373)
Q Consensus 311 l~~~~~~~gi~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~-~~~g~Pv~~ 371 (373)
+++.+.+.|+..++|||+.|++|+.|+..+.+|.+.| .+|++|||||.+|. ..+.+++++
T Consensus 224 l~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~~~~Pe~~~~~ 284 (286)
T KOG1529|consen 224 LKHLFAQKGLKLSKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEWALRAPELLIEN 284 (286)
T ss_pred HHHHHHhcCcccCCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHHhhcCchhhhhc
Confidence 9999999999999999999999999999999999999 78999999999998 444455544
No 6
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.92 E-value=6.9e-25 Score=185.49 Aligned_cols=119 Identities=37% Similarity=0.544 Sum_probs=104.9
Q ss_pred ccHHHHHHhcC----CCCeEEEEeecCCCCCCCCChhhhhh------------CCCcCceecCcccccccCCCCCCCCCC
Q 017338 78 VSVDWLHANLR----EPDLKVLDASWYMPDEQRNPFQEYQV------------AHIPGALFFDVDGVADRTTNLPHMLPS 141 (373)
Q Consensus 78 is~~~l~~~l~----~~~~~iiDvR~~~~~~~r~~~~ey~~------------gHIpGAi~ip~~~l~~~~~~~~~~l~~ 141 (373)
||++||.++++ +++++|||+|+.+++. |+..++|.. ||||||+|+|+..+........+++|+
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~-~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~ 79 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGT-REARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPS 79 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccC-cchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCC
Confidence 68999999998 5689999999776654 555578988 999999999998776655566788999
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCC--CCchHHHHHHHHHHcCCCceEEecCCHHHHH
Q 017338 142 EEAFAAAVSALGLENKDGLVVYDGK--GIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (373)
Q Consensus 142 ~e~~~~~l~~~gi~~~~~VVvy~~~--g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~ 197 (373)
.++|++.++.+||+++++||+||+. ++..|+|+||+|+.+||++|++||||+.+|+
T Consensus 80 ~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 80 EAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 9999999999999999999999975 4567999999999999999999999999996
No 7
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.90 E-value=4.1e-23 Score=174.63 Aligned_cols=117 Identities=37% Similarity=0.647 Sum_probs=99.2
Q ss_pred cCHHHHHHHhh----CCCcEEEEecCC--------CccCCCCCCCCC-CCCcccCCCCcccCcccccccCC----CCCCH
Q 017338 246 WTLEQVKRNIE----EGTYQLVDARSK--------ARFDGDAPEPRK-GIRSGHVPGSKCIPFPQMLDASQ----TLLPA 308 (373)
Q Consensus 246 is~~el~~~~~----~~~~~iIDvR~~--------~e~~G~~~~~~~-~~~~GhIpGA~~ip~~~l~~~~~----~~~~~ 308 (373)
+|.+||.++++ +++.+|||+|+. ++|.|..+++.. +.+.||||||+|+|+.++.+..+ .+++.
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~ 80 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE 80 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence 46789999987 467999999987 889876554421 23569999999999988765433 46677
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCC---chHHHHHHHHHHHcCCCCceeecccHHHHh
Q 017338 309 DELKKRFEQEGISLEKPVVTACGT---GVTACILALGLNRLGKHDVAVYDGSWTEWG 362 (373)
Q Consensus 309 ~~l~~~~~~~gi~~~~~IvvyC~~---G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~ 362 (373)
++|++.|.+.||+++++||+||.+ |.+|++++|+|+.+|++||++|||||.+|.
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 899999999999999999999986 889999999999999999999999999996
No 8
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.90 E-value=4.1e-23 Score=169.82 Aligned_cols=118 Identities=51% Similarity=0.959 Sum_probs=102.9
Q ss_pred cCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCCCCc
Q 017338 246 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKP 325 (373)
Q Consensus 246 is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~ 325 (373)
++++++.+++++++.+|||+|+..+|.+....+...+..||||||+|+|+.++....+.+++.+++++.+...+++++++
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP 80 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence 35788888887667899999999999765444433445699999999999988766667889999999999999999999
Q ss_pred EEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHhc
Q 017338 326 VVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGA 363 (373)
Q Consensus 326 IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~ 363 (373)
||+||.+|.+|..+++.|+.+||++|++|+||+.+|..
T Consensus 81 iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 81 VIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred EEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 99999999999999999999999999999999999963
No 9
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.88 E-value=3.7e-22 Score=165.19 Aligned_cols=122 Identities=54% Similarity=1.039 Sum_probs=102.4
Q ss_pred cccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCC
Q 017338 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLEN 156 (373)
Q Consensus 77 ~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi~~ 156 (373)
+|++++|.+++.+++.+|||+|..... .....+|..||||||+|+|+..+........+++++.+.|++.+..+++++
T Consensus 1 ~i~~~~l~~~l~~~~~~ivDvR~~~~~--~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd01448 1 LVSPDWLAEHLDDPDVRILDARWYLPD--RDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISN 78 (122)
T ss_pred CcCHHHHHHHhCCCCeEEEEeecCCCC--CchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCC
Confidence 489999999998878999999821111 112278999999999999998875433345678999999999999999999
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCC
Q 017338 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASG 200 (373)
Q Consensus 157 ~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g 200 (373)
+++||+||+.|+.++++++++|+.+||++|++|+||+.+|.++|
T Consensus 79 ~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 79 DDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred CCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 99999999986566999999999999999999999999998765
No 10
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.87 E-value=7.9e-23 Score=195.07 Aligned_cols=194 Identities=13% Similarity=0.119 Sum_probs=139.1
Q ss_pred CCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCC
Q 017338 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 154 (373)
Q Consensus 75 ~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi 154 (373)
.++-+++++.+.+.+ ...++|+| +...|..+||||++++|...+. .|..+|....
T Consensus 13 ~~i~~~~~~~~~l~~-~~~~~d~r---------g~i~~a~egIngtis~~~~~~~--------------~~~~~l~~~~- 67 (314)
T PRK00142 13 TPIEDPEAFRDEHLA-LCKSLGLK---------GRILVAEEGINGTVSGTIEQTE--------------AYMAWLKADP- 67 (314)
T ss_pred ccCCCHHHHHHHHHH-HHHHcCCe---------eEEEEcCCCceEEEEecHHHHH--------------HHHHHHhhCc-
Confidence 456678888887766 46789997 5578999999999999985432 3444443321
Q ss_pred CCCCeE-EEEcCCCCc----hHHHHHHHHHHcCCC-ceEEecCCHHHHHhCCCCcccCCCcchhHhhhhhHHHHHHhhcC
Q 017338 155 ENKDGL-VVYDGKGIF----SAARVWWMFRVFGHD-RVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQG 228 (373)
Q Consensus 155 ~~~~~V-Vvy~~~g~~----~a~ra~~~L~~~G~~-~v~~L~GG~~~W~~~g~pv~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (373)
...++ ++.+..... ...++...|..+|++ ++.-+. .
T Consensus 68 -~~~~i~l~~~~~~~~~f~~l~~~~~~eLv~~G~d~~v~~~~-------------~------------------------ 109 (314)
T PRK00142 68 -RFADIRFKISEDDGHAFPRLSVKVRKEIVALGLDDDIDPLE-------------N------------------------ 109 (314)
T ss_pred -CCCCceEEeccccCCCcccceeeeeeeeeecCCCCCCCccc-------------c------------------------
Confidence 12333 333331111 125566677777775 433111 0
Q ss_pred cccCCcceeeccCCccccCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCH
Q 017338 229 QVVGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPA 308 (373)
Q Consensus 229 ~~~~~~~~~~~~~~~~~is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~ 308 (373)
....++++++.+++.+++.+|||+|++.|| ..||||||+|+|+..+.+. .
T Consensus 110 -------------~~~~is~~el~~~l~~~~~vlIDVR~~~E~-----------~~GhI~GAi~ip~~~~~~~------~ 159 (314)
T PRK00142 110 -------------VGTYLKPKEVNELLDDPDVVFIDMRNDYEY-----------EIGHFENAIEPDIETFREF------P 159 (314)
T ss_pred -------------CCcccCHHHHHHHhcCCCeEEEECCCHHHH-----------hcCcCCCCEeCCHHHhhhh------H
Confidence 012467889999888888999999999999 7899999999999876431 1
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHhcC
Q 017338 309 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 364 (373)
Q Consensus 309 ~~l~~~~~~~gi~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~ 364 (373)
+.+++ ..++.++++||+||.+|.||..++..|+.+||++|++|+||+.+|...
T Consensus 160 ~~l~~---~~~~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 160 PWVEE---NLDPLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred HHHHH---hcCCCCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 22222 235678999999999999999999999999999999999999999875
No 11
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.86 E-value=6.4e-22 Score=159.52 Aligned_cols=104 Identities=30% Similarity=0.534 Sum_probs=92.3
Q ss_pred CHHHHHHHhh-CCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCCCCc
Q 017338 247 TLEQVKRNIE-EGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKP 325 (373)
Q Consensus 247 s~~el~~~~~-~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~ 325 (373)
|++++.++++ .++.+|||+|++.+| ..||||||+|+|+.++.+. ...+++++++.+...+++++++
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~-----------~~ghIpgA~~ip~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 68 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEEL-----------KTGKIPGAINIPLSSLPDA--LALSEEEFEKKYGFPKPSKDKE 68 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHH-----------hcCcCCCcEEechHHhhhh--hCCCHHHHHHHhcccCCCCCCe
Confidence 4678888887 667999999999999 7899999999999886542 3456788999998888899999
Q ss_pred EEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHhc
Q 017338 326 VVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGA 363 (373)
Q Consensus 326 IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~ 363 (373)
||+||++|.+|..+++.|+.+||++|++|+||+.+|.+
T Consensus 69 ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 69 LIFYCKAGVRSKAAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred EEEECCCcHHHHHHHHHHHHcCCccceecCCcHHHHcC
Confidence 99999999999999999999999999999999999963
No 12
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.86 E-value=1.3e-21 Score=161.91 Aligned_cols=115 Identities=24% Similarity=0.350 Sum_probs=97.1
Q ss_pred cCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCccccccc----CCCCCCHHHHHHHHHHcCCC
Q 017338 246 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDA----SQTLLPADELKKRFEQEGIS 321 (373)
Q Consensus 246 is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~----~~~~~~~~~l~~~~~~~gi~ 321 (373)
++++++.+.+.+++.+|||+|++.+|.+ ....+..||||||+|+|+.++... .+.+++.+++++.+.+.+++
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~----~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRD----GRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGIS 77 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCc----hhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 6789999998877789999999933311 000117899999999999887642 46788999999999999999
Q ss_pred CCCcEEEEcCC-chHHHHHHHHHHHcCCCCceeecccHHHHhcC
Q 017338 322 LEKPVVTACGT-GVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 364 (373)
Q Consensus 322 ~~~~IvvyC~~-G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~ 364 (373)
++++||+||++ |.+|..+++.|+.+||++|++|+|||.+|...
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~ 121 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAE 121 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhC
Confidence 99999999999 59999999999999999999999999999875
No 13
>PLN02160 thiosulfate sulfurtransferase
Probab=99.86 E-value=1.7e-21 Score=164.28 Aligned_cols=113 Identities=18% Similarity=0.302 Sum_probs=94.8
Q ss_pred cccCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCC--cccCcccccccCCCCCCHHHHHHHHHHcCCC
Q 017338 244 LIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGS--KCIPFPQMLDASQTLLPADELKKRFEQEGIS 321 (373)
Q Consensus 244 ~~is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA--~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~ 321 (373)
..++++++.+.+++ +.+|||||++.|| ..|||||| +|+|+..+. ....+++.+.+.++.. .++
T Consensus 15 ~~i~~~e~~~~~~~-~~~lIDVR~~~E~-----------~~ghIpgA~~iniP~~~~~-~~~~l~~~~~~~~~~~--~~~ 79 (136)
T PLN02160 15 VSVDVSQAKTLLQS-GHQYLDVRTQDEF-----------RRGHCEAAKIVNIPYMLNT-PQGRVKNQEFLEQVSS--LLN 79 (136)
T ss_pred eEeCHHHHHHHHhC-CCEEEECCCHHHH-----------hcCCCCCcceecccchhcC-cccccCCHHHHHHHHh--ccC
Confidence 35788999988875 4689999999999 78999999 899986653 3345666555554433 367
Q ss_pred CCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHhcCCCCCCcCC
Q 017338 322 LEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 372 (373)
Q Consensus 322 ~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~~g~Pv~~~ 372 (373)
++++||+||++|.||..++..|...||++|++|+|||.+|... |+|+++.
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~-g~p~~~~ 129 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDH-SFPINQE 129 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhC-CCCcccc
Confidence 8899999999999999999999999999999999999999999 9999865
No 14
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.86 E-value=9.9e-22 Score=158.56 Aligned_cols=115 Identities=26% Similarity=0.410 Sum_probs=98.4
Q ss_pred CccccCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCC
Q 017338 242 PHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGIS 321 (373)
Q Consensus 242 ~~~~is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~ 321 (373)
....++.++++++++.++.++||||+++|| ..||||.++|||+...... +. .+..+|.+.+.....+
T Consensus 21 ~~~sv~~~qvk~L~~~~~~~llDVRepeEf-----------k~gh~~~siNiPy~~~~~~-~~-l~~~eF~kqvg~~kp~ 87 (136)
T KOG1530|consen 21 NPQSVSVEQVKNLLQHPDVVLLDVREPEEF-----------KQGHIPASINIPYMSRPGA-GA-LKNPEFLKQVGSSKPP 87 (136)
T ss_pred CcEEEEHHHHHHHhcCCCEEEEeecCHHHh-----------hccCCcceEeccccccccc-cc-cCCHHHHHHhcccCCC
Confidence 345678999999999888999999999999 8999999999999654332 22 3456777777776677
Q ss_pred CCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHhcCCCCCCc
Q 017338 322 LEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVE 370 (373)
Q Consensus 322 ~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~~g~Pv~ 370 (373)
.|++|||||.+|.||..|...|..+||+||.+|.|||.+|.++ +.|..
T Consensus 88 ~d~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k-~~~~~ 135 (136)
T KOG1530|consen 88 HDKEIIFGCASGVRSLKATKILVSAGYKNVGNYPGSYLAWVDK-GGPKK 135 (136)
T ss_pred CCCcEEEEeccCcchhHHHHHHHHcCcccccccCccHHHHHHc-cCCCC
Confidence 7889999999999999999999999999999999999999999 66654
No 15
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.85 E-value=2.5e-21 Score=183.04 Aligned_cols=127 Identities=18% Similarity=0.296 Sum_probs=105.7
Q ss_pred cccCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccC----CCCCCHHHHHHHHHHcC
Q 017338 244 LIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS----QTLLPADELKKRFEQEG 319 (373)
Q Consensus 244 ~~is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~----~~~~~~~~l~~~~~~~g 319 (373)
+++++++|.+++++++++|||+|+..++.|.... ...++.||||||+|+|+..+.+.. ..+++++++++.+.++|
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~-~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 83 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDV-AAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELG 83 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccch-HHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcC
Confidence 5789999999999888999999986555443111 122378999999999998765533 24567899999999999
Q ss_pred CCCCCcEEEEcCCch-HHHHHHHHHHHcCCCCceeecccHHHHhcCCCCCCcCC
Q 017338 320 ISLEKPVVTACGTGV-TACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 372 (373)
Q Consensus 320 i~~~~~IvvyC~~G~-ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~~g~Pv~~~ 372 (373)
++++++||+||.+|. .++.+++.|+.+||++|++|+|||.+|.++ |+|++++
T Consensus 84 i~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~-g~p~~~~ 136 (281)
T PRK11493 84 VNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRD-DLLLEEG 136 (281)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHc-CCCccCC
Confidence 999999999999876 467889999999999999999999999998 9999875
No 16
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.84 E-value=5.6e-21 Score=153.97 Aligned_cols=104 Identities=21% Similarity=0.298 Sum_probs=90.9
Q ss_pred cHHHHHHhcC-CCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 017338 79 SVDWLHANLR-EPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENK 157 (373)
Q Consensus 79 s~~~l~~~l~-~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi~~~ 157 (373)
|++++.++++ +++++|||+| +..+|..||||||+|+|+..+.+ ...++++.|++.++..+++++
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR---------~~~e~~~ghIpgA~~ip~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 66 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVR---------EPEELKTGKIPGAINIPLSSLPD------ALALSEEEFEKKYGFPKPSKD 66 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECC---------CHHHHhcCcCCCcEEechHHhhh------hhCCCHHHHHHHhcccCCCCC
Confidence 6789999888 6679999996 45899999999999999987643 234567889999999999999
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHh
Q 017338 158 DGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (373)
Q Consensus 158 ~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~ 198 (373)
++||+||..|.+ +.+++++|+.+||++|++|+||+.+|.+
T Consensus 67 ~~ivv~c~~g~~-s~~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 67 KELIFYCKAGVR-SKAAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred CeEEEECCCcHH-HHHHHHHHHHcCCccceecCCcHHHHcC
Confidence 999999998764 8999999999999999999999999963
No 17
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.84 E-value=1.4e-20 Score=163.37 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=91.5
Q ss_pred CCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCCh---hhhhh---------CCCcCceecCcccccccCCCCCCCCCCH
Q 017338 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPF---QEYQV---------AHIPGALFFDVDGVADRTTNLPHMLPSE 142 (373)
Q Consensus 75 ~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~---~ey~~---------gHIpGAi~ip~~~l~~~~~~~~~~l~~~ 142 (373)
...|+++|+.+++++++++||||| ++. .+|.. +|||||+|+|+..+.... -+..
T Consensus 35 ~~~vs~~el~~~l~~~~~~lIDVR--------~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~------~~~~ 100 (162)
T TIGR03865 35 ARVLDTEAAQALLARGPVALIDVY--------PRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLA------PAWQ 100 (162)
T ss_pred ccccCHHHHHHHHhCCCcEEEECC--------CCccccccccccceeccccCCCCCCcEEecccCCCCCC------Cchh
Confidence 568999999999988889999997 221 13433 599999999965332211 1233
Q ss_pred HHHHHHHHHcCC-CCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCc
Q 017338 143 EAFAAAVSALGL-ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDV 203 (373)
Q Consensus 143 e~~~~~l~~~gi-~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv 203 (373)
+.|.+.+..+++ +++++||+||..|+.++.+++|+|+.+||++|++|+||+.+|+++|+|+
T Consensus 101 ~~~~~~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 101 AYFRRGLERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 457777777664 7899999999988767999999999999999999999999999999985
No 18
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.84 E-value=4.1e-21 Score=153.70 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=83.0
Q ss_pred ccCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCCCC
Q 017338 245 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEK 324 (373)
Q Consensus 245 ~is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~ 324 (373)
.++++++.+.+.+++.+|||||++.|| ..||||||+|+|+.++.+. .+.+.+.+ .+++++
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~e~-----------~~ghi~gA~~ip~~~~~~~------~~~~~~~~---~~~~~~ 62 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDYEY-----------DIGHFKGAVNPDVDTFREF------PFWLDENL---DLLKGK 62 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChhhh-----------hcCEeccccCCCcccHhHh------HHHHHhhh---hhcCCC
Confidence 478899999888778999999999999 7899999999999775321 12232222 247899
Q ss_pred cEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHhc
Q 017338 325 PVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGA 363 (373)
Q Consensus 325 ~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~ 363 (373)
+|||||.+|.||..++..|+.+||++|++++||+.+|..
T Consensus 63 ~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 63 KVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred EEEEECCCchhHHHHHHHHHHhCCcceeeechhHHHHhC
Confidence 999999999999999999999999999999999999963
No 19
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.84 E-value=8e-21 Score=156.16 Aligned_cols=107 Identities=27% Similarity=0.490 Sum_probs=92.9
Q ss_pred ccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhh-----------CCCcCceecCcccccccCCCCCCCCCCHHHHH
Q 017338 78 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQV-----------AHIPGALFFDVDGVADRTTNLPHMLPSEEAFA 146 (373)
Q Consensus 78 is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~-----------gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~ 146 (373)
||+++|.+++++++++|||+| +..+|.. ||||||+|+|+..+.... +++++++.|.
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR---------~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~----~~~~~~~~~~ 67 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDAR---------SPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDED----GTFKSPEELR 67 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCC---------CHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCC----CCcCCHHHHH
Confidence 578999999987679999997 3466665 999999999998765422 5688899999
Q ss_pred HHHHHcCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHh
Q 017338 147 AAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (373)
Q Consensus 147 ~~l~~~gi~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~ 198 (373)
+.+..++++++++||+||..|. ++.++++.|+.+||++|++|+||+.+|.+
T Consensus 68 ~~~~~~~~~~~~~iv~yc~~g~-~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 68 ALFAALGITPDKPVIVYCGSGV-TACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred HHHHHcCCCCCCCEEEECCcHH-HHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 9999999999999999999754 59999999999999999999999999963
No 20
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.84 E-value=1.6e-20 Score=163.02 Aligned_cols=122 Identities=18% Similarity=0.273 Sum_probs=92.5
Q ss_pred cCCccccCHHHHHHHhhCCCcEEEEecCCC----cc-CCCCCCCCCCCCcccCCCCcccCcccccccCCCCCC--HHHHH
Q 017338 240 FQPHLIWTLEQVKRNIEEGTYQLVDARSKA----RF-DGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLP--ADELK 312 (373)
Q Consensus 240 ~~~~~~is~~el~~~~~~~~~~iIDvR~~~----e~-~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~--~~~l~ 312 (373)
......|+++|+.+++++++.+|||+|++. +| .|.... ....||||||+|+|+..+. .+.+ .+.+.
T Consensus 32 ~~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~---~~~~~HIPGAv~ip~~~~~----~l~~~~~~~~~ 104 (162)
T TIGR03865 32 LKGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWR---DEPRLNIPGSLWLPNTGYG----NLAPAWQAYFR 104 (162)
T ss_pred cCCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceec---cccCCCCCCcEEecccCCC----CCCCchhHHHH
Confidence 344567999999999988889999999876 33 121000 0023699999999974321 1222 23466
Q ss_pred HHHHHcCC-CCCCcEEEEcCCch-HHHHHHHHHHHcCCCCceeecccHHHHhcCCCCCC
Q 017338 313 KRFEQEGI-SLEKPVVTACGTGV-TACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPV 369 (373)
Q Consensus 313 ~~~~~~gi-~~~~~IvvyC~~G~-ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~~g~Pv 369 (373)
+.+.+.+. +++++||+||++|. +|..+++.|+.+||++|++|+|||.+|..+ |+|+
T Consensus 105 ~~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~a-G~Pv 162 (162)
T TIGR03865 105 RGLERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAA-GLPL 162 (162)
T ss_pred HHHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHc-CCCC
Confidence 77766544 79999999999997 788899999999999999999999999999 9986
No 21
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.83 E-value=1.7e-20 Score=152.26 Aligned_cols=96 Identities=20% Similarity=0.297 Sum_probs=83.2
Q ss_pred ccCHHHHHHHhhCC-CcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCCC
Q 017338 245 IWTLEQVKRNIEEG-TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLE 323 (373)
Q Consensus 245 ~is~~el~~~~~~~-~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~ 323 (373)
.++++++.+.++++ +.+|||+|++.|| ..||||||+|+|+.++. ..+...+.+++
T Consensus 11 ~i~~~~l~~~~~~~~~~~liDvR~~~e~-----------~~ghIpgainip~~~l~-------------~~~~~l~~~~~ 66 (109)
T cd01533 11 SVSADELAALQARGAPLVVLDGRRFDEY-----------RKMTIPGSVSCPGAELV-------------LRVGELAPDPR 66 (109)
T ss_pred cCCHHHHHHHHhcCCCcEEEeCCCHHHH-----------hcCcCCCceeCCHHHHH-------------HHHHhcCCCCC
Confidence 57899999988755 5789999999999 78999999999986543 33444456778
Q ss_pred CcEEEEcCCchHHHHHHHHHHHcCCCC-ceeecccHHHHhcC
Q 017338 324 KPVVTACGTGVTACILALGLNRLGKHD-VAVYDGSWTEWGAQ 364 (373)
Q Consensus 324 ~~IvvyC~~G~ra~~a~~~L~~~G~~~-v~~~~GG~~~W~~~ 364 (373)
++||+||.+|.||..++..|+.+||+| |++++||+.+|...
T Consensus 67 ~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~ 108 (109)
T cd01533 67 TPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLA 108 (109)
T ss_pred CeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhc
Confidence 999999999999999999999999988 99999999999876
No 22
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.83 E-value=2.6e-20 Score=151.18 Aligned_cols=99 Identities=26% Similarity=0.267 Sum_probs=85.2
Q ss_pred CCcccHHHHHHhcCCC-CeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 017338 75 EPVVSVDWLHANLREP-DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (373)
Q Consensus 75 ~~~is~~~l~~~l~~~-~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~g 153 (373)
.+.|++++|.++++++ +.+|||+| +..+|..||||||+|+|+..+ ...+..++
T Consensus 9 ~~~i~~~~l~~~~~~~~~~~liDvR---------~~~e~~~ghIpgainip~~~l-----------------~~~~~~l~ 62 (109)
T cd01533 9 TPSVSADELAALQARGAPLVVLDGR---------RFDEYRKMTIPGSVSCPGAEL-----------------VLRVGELA 62 (109)
T ss_pred CCcCCHHHHHHHHhcCCCcEEEeCC---------CHHHHhcCcCCCceeCCHHHH-----------------HHHHHhcC
Confidence 4579999999998765 57899996 458999999999999998653 34667777
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHHHHcCCCc-eEEecCCHHHHHhCC
Q 017338 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDR-VWVLDGGLPRWRASG 200 (373)
Q Consensus 154 i~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~-v~~L~GG~~~W~~~g 200 (373)
.+++++||+||..|.+ +.++++.|+.+||++ |++|+||+.+|.++|
T Consensus 63 ~~~~~~ivv~C~~G~r-s~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 63 PDPRTPIVVNCAGRTR-SIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred CCCCCeEEEECCCCch-HHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 7788999999998775 888999999999998 999999999999875
No 23
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.83 E-value=2.6e-20 Score=179.10 Aligned_cols=120 Identities=22% Similarity=0.353 Sum_probs=104.1
Q ss_pred CCccccCHHHHHHHhhCCCcEEEEecC---------CCccCCCCCCCCCCCCcccCCCCcccCcccccccC----CCCCC
Q 017338 241 QPHLIWTLEQVKRNIEEGTYQLVDARS---------KARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS----QTLLP 307 (373)
Q Consensus 241 ~~~~~is~~el~~~~~~~~~~iIDvR~---------~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~----~~~~~ 307 (373)
++..+|++++|.+++++++.+|||+|. ..+| ..||||||+|+|+.++.+.. ..+++
T Consensus 19 ~~~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y-----------~~gHIPgAi~i~~~~~~~~~~~~~~~lp~ 87 (320)
T PLN02723 19 TNEPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEY-----------QVAHIPGALFFDLDGISDRTTDLPHMLPS 87 (320)
T ss_pred cCCceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHH-----------HhccCCCCeecCHHHhcCCCCCcCCCCCC
Confidence 355789999999999888899999972 2466 78999999999998776542 35678
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEcCCch-HHHHHHHHHHHcCCCCceeecccHHHHhcCCCCCCcCC
Q 017338 308 ADELKKRFEQEGISLEKPVVTACGTGV-TACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 372 (373)
Q Consensus 308 ~~~l~~~~~~~gi~~~~~IvvyC~~G~-ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~~g~Pv~~~ 372 (373)
.++|++.+.++|++++++|||||..|. .+.+++|.|+.+||++|++|+||+.+|..+ |+|++++
T Consensus 88 ~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~-G~pv~~~ 152 (320)
T PLN02723 88 EEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRAS-GYDVESS 152 (320)
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHc-CCCcccC
Confidence 899999999999999999999998875 567889999999999999999999999999 9999875
No 24
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.82 E-value=2.3e-20 Score=148.68 Aligned_cols=97 Identities=20% Similarity=0.373 Sum_probs=85.1
Q ss_pred ccCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCCCC
Q 017338 245 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEK 324 (373)
Q Consensus 245 ~is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~ 324 (373)
.++++|+.+.++++ .+|||+|++++| ..||||||+|+|+..+..... .+++++
T Consensus 3 ~i~~~el~~~~~~~-~~liDvR~~~e~-----------~~~hi~ga~~ip~~~~~~~~~---------------~~~~~~ 55 (99)
T cd01527 3 TISPNDACELLAQG-AVLVDIREPDEY-----------LRERIPGARLVPLSQLESEGL---------------PLVGAN 55 (99)
T ss_pred ccCHHHHHHHHHCC-CEEEECCCHHHH-----------HhCcCCCCEECChhHhccccc---------------CCCCCC
Confidence 36789999888765 899999999999 789999999999987643211 367889
Q ss_pred cEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHhcCCCCCC
Q 017338 325 PVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPV 369 (373)
Q Consensus 325 ~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~~g~Pv 369 (373)
+||+||.+|.+|+.++..|+++||.+|++|+||+.+|... ++|+
T Consensus 56 ~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~-~~~~ 99 (99)
T cd01527 56 AIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWKAA-GLPV 99 (99)
T ss_pred cEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHHHHHC-cCCC
Confidence 9999999999999999999999999999999999999998 8885
No 25
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.82 E-value=2.8e-20 Score=155.50 Aligned_cols=105 Identities=24% Similarity=0.399 Sum_probs=83.3
Q ss_pred cCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccC--C-CC--------------CCH
Q 017338 246 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS--Q-TL--------------LPA 308 (373)
Q Consensus 246 is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~--~-~~--------------~~~ 308 (373)
||++|+.++++ ++.+|||||++.|| ..||||||+|||+..+.... + .+ ...
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR~~~e~-----------~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVRSPKEF-----------FEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVS 68 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECCCHHHh-----------ccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHh
Confidence 57789998887 57899999999999 78999999999997543211 0 00 111
Q ss_pred HHHHHHHHH---cCCCCCCcEEEEcC-CchHHHHHHHHHHHcCCCCceeecccHHHHhc
Q 017338 309 DELKKRFEQ---EGISLEKPVVTACG-TGVTACILALGLNRLGKHDVAVYDGSWTEWGA 363 (373)
Q Consensus 309 ~~l~~~~~~---~gi~~~~~IvvyC~-~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~ 363 (373)
.++++.+.+ .+++++++||+||. +|.||..+++.|+.+|| +|++++||+.+|..
T Consensus 69 ~~~~~~~~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 69 GKLKRILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred hhHHHHHHHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 334444443 48999999999996 68999999999999999 69999999999975
No 26
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.82 E-value=3.8e-20 Score=190.90 Aligned_cols=117 Identities=22% Similarity=0.304 Sum_probs=105.4
Q ss_pred cccCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCccccccc----CCCCCCHHHHHHHHHHcC
Q 017338 244 LIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDA----SQTLLPADELKKRFEQEG 319 (373)
Q Consensus 244 ~~is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~----~~~~~~~~~l~~~~~~~g 319 (373)
.+|+++|+.+++++++.+|||+|++++| ..||||||+|+|+..+... .+.+++.+++++.+.++|
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY-----------~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lG 77 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARY-----------EAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELG 77 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHH-----------HhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcC
Confidence 5799999999999888999999999999 7899999999998764322 256778899999999999
Q ss_pred CCCCCcEEEEcCCc-hHHHHHHHHHHHcCCCCceeecccHHHHhcCCCCCCcCC
Q 017338 320 ISLEKPVVTACGTG-VTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 372 (373)
Q Consensus 320 i~~~~~IvvyC~~G-~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~~g~Pv~~~ 372 (373)
++++++||+||++| .+|++++|.|+.+|+++|++|||||.+|..+ |+|++++
T Consensus 78 I~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~a-g~p~~~~ 130 (610)
T PRK09629 78 HNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQ-ALPLSTD 130 (610)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHc-CCccccC
Confidence 99999999999976 5888999999999999999999999999999 9999765
No 27
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.82 E-value=5.8e-20 Score=147.01 Aligned_cols=99 Identities=23% Similarity=0.326 Sum_probs=79.8
Q ss_pred CcccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCC
Q 017338 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (373)
Q Consensus 76 ~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi~ 155 (373)
..|++++|.+++.+++++||||| +..||+.||||||+|+|+..+... .+.+.+. ...+
T Consensus 2 ~~is~~~l~~~~~~~~~~iiDvR---------~~~e~~~ghi~gA~~ip~~~~~~~----------~~~~~~~---~~~~ 59 (101)
T cd01518 2 TYLSPAEWNELLEDPEVVLLDVR---------NDYEYDIGHFKGAVNPDVDTFREF----------PFWLDEN---LDLL 59 (101)
T ss_pred CcCCHHHHHHHHcCCCEEEEEcC---------ChhhhhcCEeccccCCCcccHhHh----------HHHHHhh---hhhc
Confidence 56999999999988789999996 448999999999999999875321 1112211 1236
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHH
Q 017338 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (373)
Q Consensus 156 ~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~ 197 (373)
++++||+||..|.+ +..+++.|+.+||++|++|+||+.+|.
T Consensus 60 ~~~~ivvyC~~G~r-s~~a~~~L~~~G~~~v~~l~GG~~~W~ 100 (101)
T cd01518 60 KGKKVLMYCTGGIR-CEKASAYLKERGFKNVYQLKGGILKYL 100 (101)
T ss_pred CCCEEEEECCCchh-HHHHHHHHHHhCCcceeeechhHHHHh
Confidence 88999999998776 777788899999999999999999996
No 28
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.81 E-value=9.4e-20 Score=152.29 Aligned_cols=110 Identities=23% Similarity=0.365 Sum_probs=81.8
Q ss_pred ccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCC--------------CCCCCCCCH-
Q 017338 78 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTT--------------NLPHMLPSE- 142 (373)
Q Consensus 78 is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~--------------~~~~~l~~~- 142 (373)
||++||.++++ ++++||||| + .++|..||||||+|+|+..+..... ..+.+++..
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR--------~-~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVR--------S-PKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGK 70 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECC--------C-HHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhh
Confidence 68999999998 578999996 4 5899999999999999965322100 001112211
Q ss_pred -HHHHHHHHHcCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHh
Q 017338 143 -EAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (373)
Q Consensus 143 -e~~~~~l~~~gi~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~ 198 (373)
+++.+.+...+++++++||+||..++.+|.+++|+|+.+|| +|++|+||+.+|++
T Consensus 71 ~~~~~~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 71 LKRILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HHHHHHHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 22333333358999999999998555569999999999999 69999999999975
No 29
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.81 E-value=1.1e-19 Score=147.34 Aligned_cols=101 Identities=26% Similarity=0.357 Sum_probs=88.6
Q ss_pred ccCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCCCC
Q 017338 245 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEK 324 (373)
Q Consensus 245 ~is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~ 324 (373)
.++++++.+.+++++.+|||+|++.+| ..||||||+|+|+..+ .+.+.. +++++
T Consensus 6 ~is~~el~~~l~~~~~~ivDvR~~~e~-----------~~ghi~gA~~ip~~~l-------------~~~~~~--~~~~~ 59 (108)
T PRK00162 6 CINVEQAHQKLQEGGAVLVDIRDPQSF-----------AMGHAPGAFHLTNDSL-------------GAFMRQ--ADFDT 59 (108)
T ss_pred ccCHHHHHHHHHcCCCEEEEcCCHHHH-----------hcCCCCCCeECCHHHH-------------HHHHHh--cCCCC
Confidence 478899999887777899999999999 7899999999998543 334443 67889
Q ss_pred cEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHhcCCCCCCcCC
Q 017338 325 PVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 372 (373)
Q Consensus 325 ~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~~g~Pv~~~ 372 (373)
+|++||.+|.+|..++..|+..||+||++++|||.+|... ++|++.+
T Consensus 60 ~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~-~~~~~~~ 106 (108)
T PRK00162 60 PVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRT-FPAEVAS 106 (108)
T ss_pred CEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHHHhc-CCCccCC
Confidence 9999999999999999999999999999999999999998 8999864
No 30
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.80 E-value=2.3e-19 Score=144.40 Aligned_cols=102 Identities=22% Similarity=0.264 Sum_probs=80.2
Q ss_pred ccHHHHHHhcCCC--CeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCC
Q 017338 78 VSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (373)
Q Consensus 78 is~~~l~~~l~~~--~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi~ 155 (373)
||++||+++++++ +++|||+| +..+|..||||||+|+|+..+....... ..+|..+.|.. .
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR---------~~~e~~~ghIpgA~~ip~~~~~~~~~~~-~~~~~~~~~~~-------~ 63 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIR---------SSPDFRRGHIEGSINIPFSSVFLKEGEL-EQLPTVPRLEN-------Y 63 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECC---------CHHHHhCCccCCCEeCCHHHhccccccc-ccccchHHHHh-------h
Confidence 6899999999763 68999996 3489999999999999998754321111 33444444442 2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHH
Q 017338 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (373)
Q Consensus 156 ~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~ 197 (373)
.+++||+||..|.+ +.++++.|+.+||++|++|+||+.+|+
T Consensus 64 ~~~~vv~~c~~g~~-s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 64 KGKIIVIVSHSHKH-AALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred cCCeEEEEeCCCcc-HHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 47889999998775 888999999999999999999999996
No 31
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.80 E-value=1.8e-19 Score=142.21 Aligned_cols=98 Identities=33% Similarity=0.596 Sum_probs=85.1
Q ss_pred CCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCCCCcEEEEcCCchHHH
Q 017338 258 GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTAC 337 (373)
Q Consensus 258 ~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~IvvyC~~G~ra~ 337 (373)
++++|||+|++.+| ..||||||+|+|+..+......+. ..++++.+...+++++++||+||.+|.+|.
T Consensus 3 ~~~~ivDvR~~~e~-----------~~~hi~ga~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~ 70 (100)
T smart00450 3 EKVVLLDVRSPEEY-----------EGGHIPGAVNIPLSELLDRRGELD-ILEFEELLKRLGLDKDKPVVVYCRSGNRSA 70 (100)
T ss_pred CCEEEEECCCHHHh-----------ccCCCCCceeCCHHHhccCCCCcC-HHHHHHHHHHcCCCCCCeEEEEeCCCcHHH
Confidence 46899999999999 789999999999988765543332 236777777788999999999999999999
Q ss_pred HHHHHHHHcCCCCceeecccHHHHhcCCCCC
Q 017338 338 ILALGLNRLGKHDVAVYDGSWTEWGAQPDTP 368 (373)
Q Consensus 338 ~a~~~L~~~G~~~v~~~~GG~~~W~~~~g~P 368 (373)
.+++.|+.+||++|++|+||+.+|... +.|
T Consensus 71 ~~~~~l~~~G~~~v~~l~GG~~~w~~~-~~~ 100 (100)
T smart00450 71 KAAWLLRELGFKNVYLLDGGYKEWSAA-GPP 100 (100)
T ss_pred HHHHHHHHcCCCceEEecCCHHHHHhc-CCC
Confidence 999999999999999999999999988 554
No 32
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.80 E-value=9.7e-20 Score=150.92 Aligned_cols=105 Identities=19% Similarity=0.278 Sum_probs=87.0
Q ss_pred cccCHHHHHHHhhC-CCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCC
Q 017338 244 LIWTLEQVKRNIEE-GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 322 (373)
Q Consensus 244 ~~is~~el~~~~~~-~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~ 322 (373)
..++++++.+.+.+ .+.+|||+|++.|| ..||||||+|+|+..+.+....++.. .+...++++
T Consensus 8 ~~is~~el~~~~~~~~~~~ivDvR~~~e~-----------~~~hIpgai~ip~~~~~~~~~~~~~~-----~~~~~~~~~ 71 (122)
T cd01526 8 ERVSVKDYKNILQAGKKHVLLDVRPKVHF-----------EICRLPEAINIPLSELLSKAAELKSL-----QELPLDNDK 71 (122)
T ss_pred cccCHHHHHHHHhCCCCeEEEEcCCHHHh-----------hcccCCCCeEccHHHHhhhhhhhhhh-----hhcccccCC
Confidence 35789999998876 56889999999999 79999999999998875432221111 223346789
Q ss_pred CCcEEEEcCCchHHHHHHHHHHHcCC-CCceeecccHHHHhcC
Q 017338 323 EKPVVTACGTGVTACILALGLNRLGK-HDVAVYDGSWTEWGAQ 364 (373)
Q Consensus 323 ~~~IvvyC~~G~ra~~a~~~L~~~G~-~~v~~~~GG~~~W~~~ 364 (373)
+++||+||++|.||..++..|+.+|| ++|+.|+||+.+|..+
T Consensus 72 ~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~ 114 (122)
T cd01526 72 DSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADK 114 (122)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHH
Confidence 99999999999999999999999999 7999999999999877
No 33
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.80 E-value=1.1e-18 Score=166.01 Aligned_cols=191 Identities=17% Similarity=0.242 Sum_probs=124.1
Q ss_pred CeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCC--------------CCCCCCCC---HHHHHHHHHHcC
Q 017338 91 DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTT--------------NLPHMLPS---EEAFAAAVSALG 153 (373)
Q Consensus 91 ~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~--------------~~~~~l~~---~e~~~~~l~~~g 153 (373)
+..||||| +| .||..||||||+|+|+....+... .++..+.. ++.+.+++...
T Consensus 2 ~~~liDVR--------sp-~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~- 71 (311)
T TIGR03167 2 FDPLIDVR--------SP-AEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFA- 71 (311)
T ss_pred CCEEEECC--------CH-HHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhc-
Confidence 46899996 44 899999999999999954221100 00000110 11223332322
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcccCCCcchhHhhhhhHHHHHHhhcCcccCC
Q 017338 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGP 233 (373)
Q Consensus 154 i~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (373)
+++..||+||..++.+|.+++|.|+.+|| +|++|+||+.+|+..+.+.....+ .+
T Consensus 72 -~~~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~~~-----------------------~~ 126 (311)
T TIGR03167 72 -DGPPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEELP-----------------------QP 126 (311)
T ss_pred -CCCCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhccC-----------------------CC
Confidence 34445999997555669999999999999 699999999999998886655421 11
Q ss_pred cceeeccCCccccCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCC-CCcccCcccccccCCCCCCHHHHH
Q 017338 234 TTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVP-GSKCIPFPQMLDASQTLLPADELK 312 (373)
Q Consensus 234 ~~~~~~~~~~~~is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIp-GA~~ip~~~l~~~~~~~~~~~~l~ 312 (373)
..+.. +.....+...++.+.+.+.+.+|||+|+..+|.|. ..|||| |.. |-...+ ...|.
T Consensus 127 ~~~~v-l~g~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs--------~fG~~~~~~q--psq~~f--------e~~L~ 187 (311)
T TIGR03167 127 FPLIV-LGGMTGSGKTELLHALANAGAQVLDLEGLANHRGS--------SFGALGLGPQ--PSQKRF--------ENALA 187 (311)
T ss_pred Cceec-cCCCCCcCHHHHHHHHhcCCCeEEECCchHHhcCc--------ccCCCCCCCC--CchHHH--------HHHHH
Confidence 12222 22345678899999998888899999999999664 458888 421 211111 12333
Q ss_pred HHHHHcCCCCCCcEEEEcCCchHHH
Q 017338 313 KRFEQEGISLEKPVVTACGTGVTAC 337 (373)
Q Consensus 313 ~~~~~~gi~~~~~IvvyC~~G~ra~ 337 (373)
..+. .++++++|++-|.+...+.
T Consensus 188 ~~l~--~~~~~~~i~~e~es~~ig~ 210 (311)
T TIGR03167 188 EALR--RLDPGRPIFVEDESRRIGR 210 (311)
T ss_pred HHHH--hCCCCceEEEEeCchhhcc
Confidence 3343 3677889999998755433
No 34
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.79 E-value=4.3e-19 Score=141.31 Aligned_cols=97 Identities=22% Similarity=0.337 Sum_probs=82.6
Q ss_pred cccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCC
Q 017338 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLEN 156 (373)
Q Consensus 77 ~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi~~ 156 (373)
.|++++|.++++++ .+|||+| +.++|..||||||+|+|+..+... ...+++
T Consensus 3 ~i~~~el~~~~~~~-~~liDvR---------~~~e~~~~hi~ga~~ip~~~~~~~-------------------~~~~~~ 53 (99)
T cd01527 3 TISPNDACELLAQG-AVLVDIR---------EPDEYLRERIPGARLVPLSQLESE-------------------GLPLVG 53 (99)
T ss_pred ccCHHHHHHHHHCC-CEEEECC---------CHHHHHhCcCCCCEECChhHhccc-------------------ccCCCC
Confidence 58999999998875 8999996 458999999999999998875431 113567
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCc
Q 017338 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDV 203 (373)
Q Consensus 157 ~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv 203 (373)
+++||+||..|.+ ++.++..|+.+||++|++|+||+.+|+..|+|+
T Consensus 54 ~~~iv~~c~~g~~-s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 54 ANAIIFHCRSGMR-TQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred CCcEEEEeCCCch-HHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 8899999998765 888999999999999999999999999999875
No 35
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.79 E-value=4.2e-19 Score=165.60 Aligned_cols=120 Identities=21% Similarity=0.370 Sum_probs=103.9
Q ss_pred CCccccCHHHHHHHhhCC-----CcEEEEecCC--CccCCCCCCCCCCCCcccCCCCcccCcccccccC----CCCCCHH
Q 017338 241 QPHLIWTLEQVKRNIEEG-----TYQLVDARSK--ARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS----QTLLPAD 309 (373)
Q Consensus 241 ~~~~~is~~el~~~~~~~-----~~~iIDvR~~--~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~----~~~~~~~ 309 (373)
...++++++++.+++.++ +..+++++.. .+| ..||||||++++++...+.. +++++++
T Consensus 8 ~~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y-----------~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e 76 (285)
T COG2897 8 SSEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEY-----------LEGHIPGAVFFDWEADLSDPVPLPHMLPSPE 76 (285)
T ss_pred CcceEEcHHHHHhhccccccccCceEEEeCCcchHHHH-----------HhccCCCCEecCHHHhhcCCCCCCCCCCCHH
Confidence 456789999999999866 4555555555 666 89999999999999876543 5789999
Q ss_pred HHHHHHHHcCCCCCCcEEEEcCC-chHHHHHHHHHHHcCCCCceeecccHHHHhcCCCCCCcCC
Q 017338 310 ELKKRFEQEGISLEKPVVTACGT-GVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 372 (373)
Q Consensus 310 ~l~~~~~~~gi~~~~~IvvyC~~-G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~~g~Pv~~~ 372 (373)
+|.++|.++||+.|++||+|... +..|++++|.|+.+|++||++||||+.+|.++ |+|++++
T Consensus 77 ~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~-g~p~~~~ 139 (285)
T COG2897 77 QFAKLLGELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAA-GLPLETE 139 (285)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHc-CCCccCC
Confidence 99999999999999999999955 55788999999999999999999999999999 9999865
No 36
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.79 E-value=2.8e-19 Score=143.82 Aligned_cols=99 Identities=26% Similarity=0.350 Sum_probs=79.8
Q ss_pred cCHHHHHHHhhCC--CcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCC---CCCCHHHHHHHHHHcCC
Q 017338 246 WTLEQVKRNIEEG--TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQ---TLLPADELKKRFEQEGI 320 (373)
Q Consensus 246 is~~el~~~~~~~--~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~---~~~~~~~l~~~~~~~gi 320 (373)
||++|+.+++.++ +++|||+|++.|| ..||||||+|+|+..+..... .+...+++.+
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~-----------~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~------- 62 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDF-----------RRGHIEGSINIPFSSVFLKEGELEQLPTVPRLEN------- 62 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHH-----------hCCccCCCEeCCHHHhcccccccccccchHHHHh-------
Confidence 5778999988753 6899999999999 789999999999987653221 1222222221
Q ss_pred CCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHh
Q 017338 321 SLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWG 362 (373)
Q Consensus 321 ~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~ 362 (373)
..+++||+||.+|.+|..+++.|+.+||++|++|+||+.+|+
T Consensus 63 ~~~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 63 YKGKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred hcCCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 247899999999999999999999999999999999999995
No 37
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.79 E-value=3.1e-19 Score=141.21 Aligned_cols=93 Identities=26% Similarity=0.307 Sum_probs=76.2
Q ss_pred cCHHHHHHHhhCC--CcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCCC
Q 017338 246 WTLEQVKRNIEEG--TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLE 323 (373)
Q Consensus 246 is~~el~~~~~~~--~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~ 323 (373)
|+++|+.+.+.++ +++|||+|++.|| ..||||||+|+|+.++.... ......++
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~-----------~~ghipga~~ip~~~l~~~~-------------~~~~~~~~ 56 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEY-----------EAGHLPGFRHTPGGQLVQET-------------DHFAPVRG 56 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHH-----------HhCCCCCcEeCCHHHHHHHH-------------HHhcccCC
Confidence 4678888888754 5789999999999 78999999999987654321 11112257
Q ss_pred CcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHhc
Q 017338 324 KPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGA 363 (373)
Q Consensus 324 ~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~ 363 (373)
++||+||.+|.||..++..|+.+||+ |++|+||+.+|.+
T Consensus 57 ~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~~~W~~ 95 (95)
T cd01534 57 ARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGLAAALA 95 (95)
T ss_pred CeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence 89999999999999999999999998 9999999999963
No 38
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.79 E-value=1.6e-18 Score=170.36 Aligned_cols=104 Identities=18% Similarity=0.221 Sum_probs=88.8
Q ss_pred CcccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCC
Q 017338 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (373)
Q Consensus 76 ~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi~ 155 (373)
..|++++|.+++++ +.+|||+| +.++|..||||||+|+|+..+ .+.+..+.++
T Consensus 3 ~~is~~el~~~l~~-~~~ivDvR---------~~~e~~~ghIpgAi~ip~~~l-----------------~~~~~~~~~~ 55 (376)
T PRK08762 3 REISPAEARARAAQ-GAVLIDVR---------EAHERASGQAEGALRIPRGFL-----------------ELRIETHLPD 55 (376)
T ss_pred ceeCHHHHHHHHhC-CCEEEECC---------CHHHHhCCcCCCCEECCHHHH-----------------HHHHhhhcCC
Confidence 45899999999876 58999996 458999999999999998653 3345555667
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcccCC
Q 017338 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSA 207 (373)
Q Consensus 156 ~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~~~ 207 (373)
++++||+||..|.+ +.++++.|+.+||++|++|+||+.+|+++|+|++...
T Consensus 56 ~~~~IvvyC~~G~r-s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 106 (376)
T PRK08762 56 RDREIVLICASGTR-SAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPR 106 (376)
T ss_pred CCCeEEEEcCCCcH-HHHHHHHHHHcCCCceEeecCcHHHHHhcCCcccccc
Confidence 89999999997764 8899999999999999999999999999999988653
No 39
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.79 E-value=1e-19 Score=145.68 Aligned_cols=102 Identities=21% Similarity=0.394 Sum_probs=81.3
Q ss_pred cCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCCCCc
Q 017338 246 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKP 325 (373)
Q Consensus 246 is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~ 325 (373)
|+++++.+.+.+++.+|||+|++.+|. ..||||||+|+|+..+...... + ..+...+++++++
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~----------~~ghIpga~~ip~~~~~~~~~~----~---~~~~~~~~~~~~~ 63 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELE----------RTGMIPGAFHAPRGMLEFWADP----D---SPYHKPAFAEDKP 63 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHH----------hcCCCCCcEEcccchhhhhcCc----c---ccccccCCCCCCe
Confidence 467888888877778999999998872 4799999999998665321100 0 0111225789999
Q ss_pred EEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHhcC
Q 017338 326 VVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 364 (373)
Q Consensus 326 IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~ 364 (373)
||+||.+|.+|..+++.|+.+||++|++|+||+.+|...
T Consensus 64 ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~ 102 (103)
T cd01447 64 FVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEA 102 (103)
T ss_pred EEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHHHhhc
Confidence 999999999999999999999999999999999999765
No 40
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.78 E-value=2.6e-18 Score=165.68 Aligned_cols=168 Identities=20% Similarity=0.218 Sum_probs=113.4
Q ss_pred cHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccC---------C-----CCCCCCCCHHH
Q 017338 79 SVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRT---------T-----NLPHMLPSEEA 144 (373)
Q Consensus 79 s~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~---------~-----~~~~~l~~~e~ 144 (373)
...++.+.+.+ +.+||||| +| .||..||||||+|+|+....+.. + ..++.+++++.
T Consensus 4 ~~~~~~~~~~~-~~~lIDVR--------sp-~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l 73 (345)
T PRK11784 4 DAQDFRALFLN-DTPLIDVR--------SP-IEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNI 73 (345)
T ss_pred cHHHHHHHHhC-CCEEEECC--------CH-HHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhH
Confidence 35566666543 78999996 44 89999999999999996432110 0 13345555332
Q ss_pred HHHHHHHcCC--CCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcccCCCcchhHhhhhhHHHH
Q 017338 145 FAAAVSALGL--ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAI 222 (373)
Q Consensus 145 ~~~~l~~~gi--~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~~~~~~~~~~~~~~~~~~ 222 (373)
...+...++. +++++||+||..|+.+|.+++|.|+.+|| +|++|+||+.+|++.+.+.....+
T Consensus 74 ~~~~~~~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~~~~~-------------- 138 (345)
T PRK11784 74 AAHREEAWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTLEEAP-------------- 138 (345)
T ss_pred HHHHHHHHHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHHhhhc--------------
Confidence 2222211121 47889999997565669999999999999 699999999999988775544321
Q ss_pred HHhhcCcccCCcceeeccCCccccCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCC
Q 017338 223 EKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPG 289 (373)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpG 289 (373)
.+..|.. +....-....++...+.+.+.++||.|+..+|.|. ..|+|++
T Consensus 139 ---------~~~~~iv-l~G~TGsGKT~iL~~L~~~~~~vlDlE~~aehrGS--------~fG~~~~ 187 (345)
T PRK11784 139 ---------AQFPLVV-LGGNTGSGKTELLQALANAGAQVLDLEGLANHRGS--------SFGRLGG 187 (345)
T ss_pred ---------ccCceEe-cCCCCcccHHHHHHHHHhcCCeEEECCchhhhccc--------cccCCCC
Confidence 0111211 22223456678888888778899999999999764 4666665
No 41
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.78 E-value=2e-19 Score=145.83 Aligned_cols=105 Identities=31% Similarity=0.603 Sum_probs=85.6
Q ss_pred CHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHc--CCCCCC
Q 017338 247 TLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQE--GISLEK 324 (373)
Q Consensus 247 s~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~--gi~~~~ 324 (373)
|++|+++++++++++|||+|++.+| ..||||||+|+|+..+ .........+.+...+... ++++++
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~-----------~~~hI~ga~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEY-----------ERGHIPGAVNIPFPSL-DPDEPSLSEDKLDEFLKELGKKIDKDK 68 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHH-----------HHSBETTEEEEEGGGG-SSSSSBCHHHHHHHHHHHHTHGSTTTS
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHH-----------HcCCCCCCcccccccc-ccccccccccccccccccccccccccc
Confidence 5789999997778999999999999 8999999999999877 3333344555555555443 468889
Q ss_pred cEEEEcCCchHHHHHHHH-----HHHcCCCCceeecccHHHHhc
Q 017338 325 PVVTACGTGVTACILALG-----LNRLGKHDVAVYDGSWTEWGA 363 (373)
Q Consensus 325 ~IvvyC~~G~ra~~a~~~-----L~~~G~~~v~~~~GG~~~W~~ 363 (373)
+||+||.+|.++..++.. |+.+||++|++|+|||.+|.+
T Consensus 69 ~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~ 112 (113)
T PF00581_consen 69 DIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKA 112 (113)
T ss_dssp EEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHH
T ss_pred cceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhc
Confidence 999999998888776665 888999999999999999975
No 42
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.78 E-value=6.6e-19 Score=140.56 Aligned_cols=98 Identities=14% Similarity=0.236 Sum_probs=79.5
Q ss_pred cCHHHHHHHhhC-CCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCCCC
Q 017338 246 WTLEQVKRNIEE-GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEK 324 (373)
Q Consensus 246 is~~el~~~~~~-~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~ 324 (373)
++++++.+.+++ .+.+|||+|++.|| ..||||||+|+|+..+.... + +...+.+. .+++++
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~-----------~~ghi~ga~~ip~~~~~~~~--~---~~~~~~~~--~~~~~~ 62 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDY-----------ERWKIDGENNTPYFDPYFDF--L---EIEEDILD--QLPDDQ 62 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHH-----------hhcccCCCcccccccchHHH--H---HhhHHHHh--hCCCCC
Confidence 467888888876 35899999999999 78999999999998764320 0 01122233 367899
Q ss_pred cEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHh
Q 017338 325 PVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWG 362 (373)
Q Consensus 325 ~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~ 362 (373)
+||+||.+|.||..++..|+.+||+ ++.+.||+.+|.
T Consensus 63 ~ivv~C~~G~rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 63 EVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred eEEEEcCCCCcHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 9999999999999999999999998 999999999996
No 43
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.78 E-value=1.5e-18 Score=140.60 Aligned_cols=103 Identities=22% Similarity=0.305 Sum_probs=87.2
Q ss_pred CCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCC
Q 017338 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 154 (373)
Q Consensus 75 ~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi 154 (373)
.+.+++++|.+++++++.+|||+| +..+|..||||||+|+|+.. |...+..+
T Consensus 4 ~~~is~~el~~~l~~~~~~ivDvR---------~~~e~~~ghi~gA~~ip~~~-----------------l~~~~~~~-- 55 (108)
T PRK00162 4 FECINVEQAHQKLQEGGAVLVDIR---------DPQSFAMGHAPGAFHLTNDS-----------------LGAFMRQA-- 55 (108)
T ss_pred ccccCHHHHHHHHHcCCCEEEEcC---------CHHHHhcCCCCCCeECCHHH-----------------HHHHHHhc--
Confidence 456999999999977678999996 45899999999999999754 44455554
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcccC
Q 017338 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESS 206 (373)
Q Consensus 155 ~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~~ 206 (373)
++++++|+||..|.+ +..++..|+..||++|++|+||+.+|++.++|++.+
T Consensus 56 ~~~~~ivv~c~~g~~-s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~~ 106 (108)
T PRK00162 56 DFDTPVMVMCYHGNS-SQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVAS 106 (108)
T ss_pred CCCCCEEEEeCCCCC-HHHHHHHHHHCCchheEEecCCHHHHHhcCCCccCC
Confidence 567889999997765 788888999999999999999999999999998764
No 44
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.78 E-value=7.6e-19 Score=140.51 Aligned_cols=96 Identities=19% Similarity=0.345 Sum_probs=79.7
Q ss_pred cCHHHHHHHhhCC--CcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCCC
Q 017338 246 WTLEQVKRNIEEG--TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLE 323 (373)
Q Consensus 246 is~~el~~~~~~~--~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~ 323 (373)
|+++++.+.+..+ +.+|||+|++.|| ..+|||||+|+|+.++.+. .+.+.. .+++
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~-----------~~~hI~ga~~ip~~~~~~~----------~~~~~~--~~~~ 58 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEEL-----------EIAFLPGFLHLPMSEIPER----------SKELDS--DNPD 58 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHH-----------hcCcCCCCEecCHHHHHHH----------HHHhcc--cCCC
Confidence 5678898888764 5789999999999 7899999999998765321 111221 2568
Q ss_pred CcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHhcC
Q 017338 324 KPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 364 (373)
Q Consensus 324 ~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~ 364 (373)
++||+||++|.+|..+++.|..+||++|++|+||+.+|...
T Consensus 59 ~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~ 99 (101)
T cd01528 59 KDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSLE 99 (101)
T ss_pred CeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence 99999999999999999999999999999999999999764
No 45
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.78 E-value=5e-19 Score=145.56 Aligned_cols=105 Identities=17% Similarity=0.225 Sum_probs=85.6
Q ss_pred cCHHHHHHHhhC-CCcEEEEecCCCccCCCCCCCCCCCC-cccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCCC
Q 017338 246 WTLEQVKRNIEE-GTYQLVDARSKARFDGDAPEPRKGIR-SGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLE 323 (373)
Q Consensus 246 is~~el~~~~~~-~~~~iIDvR~~~e~~G~~~~~~~~~~-~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~ 323 (373)
+|++++.+++++ ++.+|||+|++.|| . .||||||+|+|+.++..... . ..+...+... ++++
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~-----------~~~ghIpgA~~ip~~~~~~~~~---~-~~~~~~l~~~-~~~~ 64 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEW-----------KFVGGVPDAVHVAWQVYPDMEI---N-PNFLAELEEK-VGKD 64 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHH-----------hcccCCCCceecchhhcccccc---C-HHHHHHHHhh-CCCC
Confidence 467888888877 57899999999999 7 89999999999988764211 1 2333333333 3788
Q ss_pred CcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHhcCCC
Q 017338 324 KPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPD 366 (373)
Q Consensus 324 ~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~~g 366 (373)
++||+||.+|.+|..++..|+.+||++|+.|.||+.+|....|
T Consensus 65 ~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~~~ 107 (117)
T cd01522 65 RPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLDAAG 107 (117)
T ss_pred CeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceecCCCCCC
Confidence 9999999999999999999999999999999999999977644
No 46
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.78 E-value=8e-19 Score=138.81 Aligned_cols=93 Identities=22% Similarity=0.272 Sum_probs=74.3
Q ss_pred ccHHHHHHhcCCC--CeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCC
Q 017338 78 VSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (373)
Q Consensus 78 is~~~l~~~l~~~--~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi~ 155 (373)
||+++|.+++.+. +++||||| +.++|..||||||+|+|+..+.. .+..+...
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR---------~~~e~~~ghipga~~ip~~~l~~-----------------~~~~~~~~ 54 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVR---------TPEEYEAGHLPGFRHTPGGQLVQ-----------------ETDHFAPV 54 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECC---------CHHHHHhCCCCCcEeCCHHHHHH-----------------HHHHhccc
Confidence 6889999988764 58899996 45899999999999999876432 11222223
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHh
Q 017338 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (373)
Q Consensus 156 ~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~ 198 (373)
++++||+||..|.+ +..+++.|+.+||+ |++|+||+.+|.+
T Consensus 55 ~~~~iv~~c~~G~r-s~~aa~~L~~~G~~-v~~l~GG~~~W~~ 95 (95)
T cd01534 55 RGARIVLADDDGVR-ADMTASWLAQMGWE-VYVLEGGLAAALA 95 (95)
T ss_pred CCCeEEEECCCCCh-HHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence 56889999998876 77788889999998 9999999999964
No 47
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.77 E-value=1.5e-18 Score=141.07 Aligned_cols=101 Identities=22% Similarity=0.325 Sum_probs=83.5
Q ss_pred CCcccHHHHHHhcCCC--CeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHc
Q 017338 75 EPVVSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (373)
Q Consensus 75 ~~~is~~~l~~~l~~~--~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~ 152 (373)
...|++++|.+++.+. +++|||+| +..+|..||||||+|+|...+.. .. ..
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR---------~~~e~~~ghIpgA~~ip~~~l~~----------------~~--~~ 59 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVR---------SAEAYARGHVPGAINLPHREICE----------------NA--TA 59 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECC---------CHHHHhcCCCCCCEeCCHHHhhh----------------Hh--hh
Confidence 3569999999998763 58999996 44899999999999999876431 01 12
Q ss_pred CCCCCCeEEEEcCCCC-chHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCc
Q 017338 153 GLENKDGLVVYDGKGI-FSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDV 203 (373)
Q Consensus 153 gi~~~~~VVvy~~~g~-~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv 203 (373)
+++++++||+||..|. ..+.++++.|+.+||+ +++|+||+.+|+.+|+|+
T Consensus 60 ~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 60 KLDKEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred cCCCCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 5678999999998764 4589999999999994 999999999999999875
No 48
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.77 E-value=6.2e-19 Score=143.37 Aligned_cols=99 Identities=25% Similarity=0.328 Sum_probs=83.6
Q ss_pred cccCHHHHHHHhhC--CCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCC
Q 017338 244 LIWTLEQVKRNIEE--GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGIS 321 (373)
Q Consensus 244 ~~is~~el~~~~~~--~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~ 321 (373)
..++++++.+.+.. ++.+|||+|++.+| ..||||||+|+|+..+... .+ .+++
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~-----------~~ghIpgA~~ip~~~l~~~------------~~--~~i~ 62 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAEAY-----------ARGHVPGAINLPHREICEN------------AT--AKLD 62 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHHHH-----------hcCCCCCCEeCCHHHhhhH------------hh--hcCC
Confidence 35788999998875 35899999999999 7899999999998775321 11 2578
Q ss_pred CCCcEEEEcCCc--hHHHHHHHHHHHcCCCCceeecccHHHHhcCCCCCC
Q 017338 322 LEKPVVTACGTG--VTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPV 369 (373)
Q Consensus 322 ~~~~IvvyC~~G--~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~~g~Pv 369 (373)
++++||+||.+| .+|..+++.|+.+||+ +++|+||+.+|... |+|+
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~-g~~~ 110 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKRE-GYAT 110 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHC-CCCC
Confidence 999999999987 4899999999999995 99999999999998 8885
No 49
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.77 E-value=1.3e-18 Score=139.30 Aligned_cols=102 Identities=20% Similarity=0.292 Sum_probs=79.2
Q ss_pred ccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhh-hhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCC
Q 017338 78 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEY-QVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLEN 156 (373)
Q Consensus 78 is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey-~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi~~ 156 (373)
|++++|.+++.+++.+|||+| + ..+| ..||||||+|+|+..+....... ..+...++++
T Consensus 1 is~~el~~~~~~~~~~iiDvR--------~-~~~~~~~ghIpga~~ip~~~~~~~~~~~-----------~~~~~~~~~~ 60 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVR--------D-PRELERTGMIPGAFHAPRGMLEFWADPD-----------SPYHKPAFAE 60 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECC--------C-HHHHHhcCCCCCcEEcccchhhhhcCcc-----------ccccccCCCC
Confidence 688999999887789999996 3 3666 67999999999986653210000 0111235778
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCC
Q 017338 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASG 200 (373)
Q Consensus 157 ~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g 200 (373)
+++||+||..|.+ +.+++++|+.+||++|++|+||+.+|..+|
T Consensus 61 ~~~ivv~c~~g~~-s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 61 DKPFVFYCASGWR-SALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred CCeEEEEcCCCCc-HHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 9999999987765 889999999999999999999999998664
No 50
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.77 E-value=5.1e-19 Score=139.84 Aligned_cols=91 Identities=22% Similarity=0.429 Sum_probs=79.0
Q ss_pred cCHHHHHHHhhC-CCcEEEEecCCCccCCCCCCCCCCCCc--ccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCC
Q 017338 246 WTLEQVKRNIEE-GTYQLVDARSKARFDGDAPEPRKGIRS--GHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 322 (373)
Q Consensus 246 is~~el~~~~~~-~~~~iIDvR~~~e~~G~~~~~~~~~~~--GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~ 322 (373)
++++++.+.+.+ .+.+|||+|++.+| .. ||||||+|+|+.++. +.+. .+++
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~-----------~~~~~hi~ga~~ip~~~~~-------------~~~~--~~~~ 55 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASY-----------AALPDHIPGAIHLDEDSLD-------------DWLG--DLDR 55 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHH-----------hcccCCCCCCeeCCHHHHH-------------HHHh--hcCC
Confidence 567888888776 46899999999999 66 999999999997543 2233 3678
Q ss_pred CCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHh
Q 017338 323 EKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWG 362 (373)
Q Consensus 323 ~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~ 362 (373)
+++||+||.+|.+|..++..|+.+||++|++++||+.+|.
T Consensus 56 ~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 56 DRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 9999999999999999999999999999999999999996
No 51
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.77 E-value=2.7e-18 Score=135.37 Aligned_cols=99 Identities=32% Similarity=0.613 Sum_probs=81.8
Q ss_pred CCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEEcCCCC
Q 017338 89 EPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGI 168 (373)
Q Consensus 89 ~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi~~~~~VVvy~~~g~ 168 (373)
+++++|||+| +..+|..||||||+|+|+..+........ ...+.+.+...++.++++||+||..+.
T Consensus 2 ~~~~~ivDvR---------~~~e~~~~hi~ga~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~iv~~c~~g~ 67 (100)
T smart00450 2 DEKVVLLDVR---------SPEEYEGGHIPGAVNIPLSELLDRRGELD-----ILEFEELLKRLGLDKDKPVVVYCRSGN 67 (100)
T ss_pred CCCEEEEECC---------CHHHhccCCCCCceeCCHHHhccCCCCcC-----HHHHHHHHHHcCCCCCCeEEEEeCCCc
Confidence 3578999997 45899999999999999987654322211 126777888889999999999997655
Q ss_pred chHHHHHHHHHHcCCCceEEecCCHHHHHhCCCC
Q 017338 169 FSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYD 202 (373)
Q Consensus 169 ~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~p 202 (373)
.+.++++.|+.+|+++|++|+||+.+|..++.|
T Consensus 68 -~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 68 -RSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred -HHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 589999999999999999999999999988764
No 52
>PLN02160 thiosulfate sulfurtransferase
Probab=99.76 E-value=5.6e-18 Score=142.89 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=89.9
Q ss_pred CCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCc--eecCcccccccCCCCCCCCCCHHHHHHHHHHc
Q 017338 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGA--LFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (373)
Q Consensus 75 ~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGA--i~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~ 152 (373)
...|+++++.+++++ +.+||||| +..+|..|||||| +|+|+..+... ..+.+.+.... +..
T Consensus 14 ~~~i~~~e~~~~~~~-~~~lIDVR---------~~~E~~~ghIpgA~~iniP~~~~~~~-----~~l~~~~~~~~-~~~- 76 (136)
T PLN02160 14 VVSVDVSQAKTLLQS-GHQYLDVR---------TQDEFRRGHCEAAKIVNIPYMLNTPQ-----GRVKNQEFLEQ-VSS- 76 (136)
T ss_pred eeEeCHHHHHHHHhC-CCEEEECC---------CHHHHhcCCCCCcceecccchhcCcc-----cccCCHHHHHH-HHh-
Confidence 456999999998876 46899996 4589999999999 89998544210 12223332232 222
Q ss_pred CCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcccCC
Q 017338 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSA 207 (373)
Q Consensus 153 gi~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~~~ 207 (373)
.++++++||+||..|.+ |..++..|...||++|++|+||+.+|.++|+|+.+..
T Consensus 77 ~~~~~~~IivyC~sG~R-S~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 130 (136)
T PLN02160 77 LLNPADDILVGCQSGAR-SLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEE 130 (136)
T ss_pred ccCCCCcEEEECCCcHH-HHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccc
Confidence 24678899999998775 8999999999999999999999999999999999865
No 53
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.76 E-value=2.4e-18 Score=134.71 Aligned_cols=88 Identities=23% Similarity=0.462 Sum_probs=75.8
Q ss_pred CHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCCCCcE
Q 017338 247 TLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPV 326 (373)
Q Consensus 247 s~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~I 326 (373)
+++|+.+++ .++.++||+|++++| ..||||||+|+|+.++. +.+. .++++++|
T Consensus 2 ~~~e~~~~~-~~~~~iiD~R~~~~~-----------~~~hipgA~~ip~~~~~-------------~~~~--~~~~~~~v 54 (90)
T cd01524 2 QWHELDNYR-ADGVTLIDVRTPQEF-----------EKGHIKGAINIPLDELR-------------DRLN--ELPKDKEI 54 (90)
T ss_pred CHHHHHHHh-cCCCEEEECCCHHHH-----------hcCCCCCCEeCCHHHHH-------------HHHH--hcCCCCcE
Confidence 467888887 457889999999999 78999999999986542 2233 36788999
Q ss_pred EEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHh
Q 017338 327 VTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWG 362 (373)
Q Consensus 327 vvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~ 362 (373)
|+||.+|.++..++..|+.+|| +|++|+||+.+|.
T Consensus 55 vl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 55 IVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred EEEcCCChhHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 9999999999999999999999 8999999999996
No 54
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.75 E-value=3.6e-18 Score=136.61 Aligned_cols=94 Identities=22% Similarity=0.353 Sum_probs=77.7
Q ss_pred ccHHHHHHhcCCC--CeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCC-
Q 017338 78 VSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL- 154 (373)
Q Consensus 78 is~~~l~~~l~~~--~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi- 154 (373)
|++++|.+++..+ +++|||+| +.++|..+|||||+|+|+..+.+ .+..+..
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR---------~~~e~~~~hI~ga~~ip~~~~~~-----------------~~~~~~~~ 55 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVR---------EPEELEIAFLPGFLHLPMSEIPE-----------------RSKELDSD 55 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECC---------CHHHHhcCcCCCCEecCHHHHHH-----------------HHHHhccc
Confidence 7899999998865 58999996 45899999999999999876532 2233322
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHh
Q 017338 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (373)
Q Consensus 155 ~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~ 198 (373)
+++++||+||..|.+ |+++++.|...||++|++|+||+.+|..
T Consensus 56 ~~~~~vv~~c~~g~r-s~~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 56 NPDKDIVVLCHHGGR-SMQVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred CCCCeEEEEeCCCch-HHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence 568899999998765 8888999999999999999999999975
No 55
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.75 E-value=2.5e-18 Score=136.21 Aligned_cols=87 Identities=30% Similarity=0.479 Sum_probs=73.2
Q ss_pred CCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCCCCcEEEEcCCchHH
Q 017338 257 EGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTA 336 (373)
Q Consensus 257 ~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~IvvyC~~G~ra 336 (373)
+++.+|||+|++.+| ..||||||+|+|+.++.. ..++++. +. .++++++||+||.+|.+|
T Consensus 10 ~~~~~iiDvR~~~~~-----------~~~hIpgA~~ip~~~~~~------~~~~~~~-~~--~~~~~~~ivv~c~~g~~s 69 (96)
T cd01529 10 EPGTALLDVRAEDEY-----------AAGHLPGKRSIPGAALVL------RSQELQA-LE--APGRATRYVLTCDGSLLA 69 (96)
T ss_pred CCCeEEEeCCCHHHH-----------cCCCCCCcEeCCHHHhcC------CHHHHHH-hh--cCCCCCCEEEEeCChHHH
Confidence 456899999999999 789999999999876532 2344443 44 257899999999999999
Q ss_pred HHHHHHHHHcCCCCceeecccHHHHhc
Q 017338 337 CILALGLNRLGKHDVAVYDGSWTEWGA 363 (373)
Q Consensus 337 ~~a~~~L~~~G~~~v~~~~GG~~~W~~ 363 (373)
..+++.|+.+||++|++|+||+.+|.+
T Consensus 70 ~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 70 RFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred HHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 999999999999999999999999964
No 56
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.75 E-value=4.9e-18 Score=137.61 Aligned_cols=106 Identities=26% Similarity=0.524 Sum_probs=80.7
Q ss_pred cHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC--CCC
Q 017338 79 SVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG--LEN 156 (373)
Q Consensus 79 s~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~g--i~~ 156 (373)
||+||++++++++++|||+| +..+|..||||||+|+|+..+. ........+.+...+...+ +++
T Consensus 1 s~~el~~~l~~~~~~liD~R---------~~~~~~~~hI~ga~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 66 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVR---------SPEEYERGHIPGAVNIPFPSLD-----PDEPSLSEDKLDEFLKELGKKIDK 66 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEES---------SHHHHHHSBETTEEEEEGGGGS-----SSSSBCHHHHHHHHHHHHTHGSTT
T ss_pred CHHHHHhhhhCCCeEEEEeC---------CHHHHHcCCCCCCccccccccc-----cccccccccccccccccccccccc
Confidence 68999999977789999997 6689999999999999997651 1223344455555445444 478
Q ss_pred CCeEEEEcCCCCchHHH-----HHHHHHHcCCCceEEecCCHHHHHhC
Q 017338 157 KDGLVVYDGKGIFSAAR-----VWWMFRVFGHDRVWVLDGGLPRWRAS 199 (373)
Q Consensus 157 ~~~VVvy~~~g~~~a~r-----a~~~L~~~G~~~v~~L~GG~~~W~~~ 199 (373)
++.||+||..+.. +.. .+|+|..+||++|++|+||+.+|.++
T Consensus 67 ~~~iv~yc~~~~~-~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 67 DKDIVFYCSSGWR-SGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp TSEEEEEESSSCH-HHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred cccceeeeecccc-cchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 8899999965543 333 34459999999999999999999863
No 57
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.75 E-value=4.9e-18 Score=140.66 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=86.9
Q ss_pred CCCcccHHHHHHhcCC-CCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHH-HHHH
Q 017338 74 KEPVVSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAA-AVSA 151 (373)
Q Consensus 74 ~~~~is~~~l~~~l~~-~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~-~l~~ 151 (373)
....|++++|.+++.+ .+++|||+| +..+|..||||||+|+|+..+.+.... +.. .+..
T Consensus 6 ~~~~is~~el~~~~~~~~~~~ivDvR---------~~~e~~~~hIpgai~ip~~~~~~~~~~----------~~~~~~~~ 66 (122)
T cd01526 6 PEERVSVKDYKNILQAGKKHVLLDVR---------PKVHFEICRLPEAINIPLSELLSKAAE----------LKSLQELP 66 (122)
T ss_pred cccccCHHHHHHHHhCCCCeEEEEcC---------CHHHhhcccCCCCeEccHHHHhhhhhh----------hhhhhhcc
Confidence 4557999999999876 578999996 568999999999999999876542111 111 2334
Q ss_pred cCCCCCCeEEEEcCCCCchHHHHHHHHHHcCC-CceEEecCCHHHHHhCCCC
Q 017338 152 LGLENKDGLVVYDGKGIFSAARVWWMFRVFGH-DRVWVLDGGLPRWRASGYD 202 (373)
Q Consensus 152 ~gi~~~~~VVvy~~~g~~~a~ra~~~L~~~G~-~~v~~L~GG~~~W~~~g~p 202 (373)
.+++++++||+||..|.+ +..++..|+.+|| ++|++|+||+.+|.++..+
T Consensus 67 ~~~~~~~~ivv~C~~G~r-s~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~ 117 (122)
T cd01526 67 LDNDKDSPIYVVCRRGND-SQTAVRKLKELGLERFVRDIIGGLKAWADKVDP 117 (122)
T ss_pred cccCCCCcEEEECCCCCc-HHHHHHHHHHcCCccceeeecchHHHHHHHhCc
Confidence 567889999999998765 8889999999999 6999999999999876543
No 58
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.75 E-value=2.5e-18 Score=142.19 Aligned_cols=98 Identities=13% Similarity=0.251 Sum_probs=78.7
Q ss_pred ccCHHHHHHHhhC------CCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcc-cccccCCCCCCHHHHHHHHHH
Q 017338 245 IWTLEQVKRNIEE------GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFP-QMLDASQTLLPADELKKRFEQ 317 (373)
Q Consensus 245 ~is~~el~~~~~~------~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~-~l~~~~~~~~~~~~l~~~~~~ 317 (373)
.|+++++.+.+.+ ++++|||+|++.|| ..||||||+|+|+. .+.+ .+.+...+
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~-----------~~ghI~gA~~ip~~~~l~~---------~~~~~~~~ 62 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEY-----------NGGHIKGAVNLSTKDELEE---------FFLDKPGV 62 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHH-----------hCCcCCCCEeCCcHHHHHH---------HHHHhhcc
Confidence 3688999888865 36899999999999 78999999999985 2321 11111112
Q ss_pred cCCCCCCcEEEEcC-CchHHHHHHHHHHHc------------CCCCceeecccHHHHh
Q 017338 318 EGISLEKPVVTACG-TGVTACILALGLNRL------------GKHDVAVYDGSWTEWG 362 (373)
Q Consensus 318 ~gi~~~~~IvvyC~-~G~ra~~a~~~L~~~------------G~~~v~~~~GG~~~W~ 362 (373)
.+++++++||+||. +|.||..+++.|+.+ ||.+|++++||+.+|-
T Consensus 63 ~~~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 63 ASKKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred cccCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 35789999999997 999999999999884 9999999999999984
No 59
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.74 E-value=7.1e-18 Score=139.50 Aligned_cols=98 Identities=17% Similarity=0.233 Sum_probs=77.6
Q ss_pred cccHHHHHHhcCC------CCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcc-cccccCCCCCCCCCCHHHHHHHH
Q 017338 77 VVSVDWLHANLRE------PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVD-GVADRTTNLPHMLPSEEAFAAAV 149 (373)
Q Consensus 77 ~is~~~l~~~l~~------~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~-~l~~~~~~~~~~l~~~e~~~~~l 149 (373)
.||++++.+++.+ ++++||||| + ..+|..||||||+|+|+. .+.. .+....
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR--------~-~~e~~~ghI~gA~~ip~~~~l~~-------------~~~~~~ 60 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCR--------F-PYEYNGGHIKGAVNLSTKDELEE-------------FFLDKP 60 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECC--------C-HHHHhCCcCCCCEeCCcHHHHHH-------------HHHHhh
Confidence 4899999999875 368999996 4 489999999999999986 3321 111111
Q ss_pred HHcCCCCCCeEEEEcC-CCCchHHHHHHHHHHc------------CCCceEEecCCHHHHH
Q 017338 150 SALGLENKDGLVVYDG-KGIFSAARVWWMFRVF------------GHDRVWVLDGGLPRWR 197 (373)
Q Consensus 150 ~~~gi~~~~~VVvy~~-~g~~~a~ra~~~L~~~------------G~~~v~~L~GG~~~W~ 197 (373)
..++++++++||+||. .|. +++++++.|+.+ ||.+|++|+||+.+|.
T Consensus 61 ~~~~~~~~~~vv~yC~~sg~-rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 61 GVASKKKRRVLIFHCEFSSK-RGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred cccccCCCCEEEEECCCccc-cHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 2346789999999997 555 599999999985 9999999999999984
No 60
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.3e-17 Score=134.81 Aligned_cols=115 Identities=19% Similarity=0.282 Sum_probs=98.0
Q ss_pred CCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 017338 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (373)
Q Consensus 74 ~~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~g 153 (373)
....++.++++++++.++.++|||| +| +||..||||.+||||+..... ..+++++ .|.+-++..-
T Consensus 21 ~~~sv~~~qvk~L~~~~~~~llDVR--------ep-eEfk~gh~~~siNiPy~~~~~-----~~~l~~~-eF~kqvg~~k 85 (136)
T KOG1530|consen 21 NPQSVSVEQVKNLLQHPDVVLLDVR--------EP-EEFKQGHIPASINIPYMSRPG-----AGALKNP-EFLKQVGSSK 85 (136)
T ss_pred CcEEEEHHHHHHHhcCCCEEEEeec--------CH-HHhhccCCcceEecccccccc-----ccccCCH-HHHHHhcccC
Confidence 4457999999999999889999995 55 999999999999999975433 3455544 4776777777
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcc
Q 017338 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVE 204 (373)
Q Consensus 154 i~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~ 204 (373)
...++.|||||..|.+ +..|...|..+||+||..+.|||.+|.+.++|..
T Consensus 86 p~~d~eiIf~C~SG~R-s~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 86 PPHDKEIIFGCASGVR-SLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred CCCCCcEEEEeccCcc-hhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 7788899999998886 8899999999999999999999999999988753
No 61
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.73 E-value=1.6e-17 Score=132.60 Aligned_cols=98 Identities=21% Similarity=0.132 Sum_probs=76.8
Q ss_pred ccHHHHHHhcCC-CCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCC
Q 017338 78 VSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLEN 156 (373)
Q Consensus 78 is~~~l~~~l~~-~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi~~ 156 (373)
|++++|.+++++ ++++||||| +.++|+.||||||+|+|+..+... + .+...+.+.. +++
T Consensus 1 is~~el~~~l~~~~~~~liDvR---------~~~e~~~ghi~ga~~ip~~~~~~~-------~--~~~~~~~~~~--~~~ 60 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVR---------NESDYERWKIDGENNTPYFDPYFD-------F--LEIEEDILDQ--LPD 60 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeC---------CHHHHhhcccCCCcccccccchHH-------H--HHhhHHHHhh--CCC
Confidence 688999998876 468999996 458999999999999999875320 0 0001223333 357
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHH
Q 017338 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (373)
Q Consensus 157 ~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~ 197 (373)
+++||+||..|.+ +..++..|+..||+ ++.|.||+.+|.
T Consensus 61 ~~~ivv~C~~G~r-s~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 61 DQEVTVICAKEGS-SQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred CCeEEEEcCCCCc-HHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 8899999998775 88899999999998 999999999995
No 62
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.73 E-value=8.7e-18 Score=143.25 Aligned_cols=87 Identities=26% Similarity=0.433 Sum_probs=77.0
Q ss_pred CcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCCCCcEEEEcCCchHHHH
Q 017338 259 TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACI 338 (373)
Q Consensus 259 ~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~IvvyC~~G~ra~~ 338 (373)
+.+|||+|++.+| +.||||||+|+|. ++|++.+.+ ++++++|||||.+|.+|..
T Consensus 11 ~~~ivDvR~~~e~-----------~~gHIpgAi~~~~-------------~~l~~~l~~--l~~~~~vVv~c~~g~~a~~ 64 (145)
T cd01535 11 QTAVVDVTASANY-----------VKRHIPGAWWVLR-------------AQLAQALEK--LPAAERYVLTCGSSLLARF 64 (145)
T ss_pred CeEEEECCCHHHH-----------HcCCCCCceeCCH-------------HHHHHHHHh--cCCCCCEEEEeCCChHHHH
Confidence 5899999999999 8999999999975 345555664 4568999999999999999
Q ss_pred HHHHHHHcCCCCceeecccHHHHhcCCCCCCcCC
Q 017338 339 LALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 372 (373)
Q Consensus 339 a~~~L~~~G~~~v~~~~GG~~~W~~~~g~Pv~~~ 372 (373)
+++.|+..|+++|++|+||+.+|... |+|++++
T Consensus 65 aa~~L~~~G~~~v~~L~GG~~aW~~~-g~pl~~~ 97 (145)
T cd01535 65 AAADLAALTVKPVFVLEGGTAAWIAA-GLPVESG 97 (145)
T ss_pred HHHHHHHcCCcCeEEecCcHHHHHHC-CCCcccC
Confidence 99999999999999999999999999 9999864
No 63
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.73 E-value=1.6e-17 Score=131.59 Aligned_cols=94 Identities=26% Similarity=0.385 Sum_probs=72.5
Q ss_pred HHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCe
Q 017338 80 VDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDG 159 (373)
Q Consensus 80 ~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi~~~~~ 159 (373)
++||.+. +++++|||+| + ..+|..||||||+|+|+..+.. ..+.++. +.. ++++++
T Consensus 3 ~~~l~~~--~~~~~iiDvR--------~-~~~~~~~hIpgA~~ip~~~~~~----------~~~~~~~-~~~--~~~~~~ 58 (96)
T cd01529 3 ADWLGEH--EPGTALLDVR--------A-EDEYAAGHLPGKRSIPGAALVL----------RSQELQA-LEA--PGRATR 58 (96)
T ss_pred hHHHhcC--CCCeEEEeCC--------C-HHHHcCCCCCCcEeCCHHHhcC----------CHHHHHH-hhc--CCCCCC
Confidence 4566653 4578999996 3 4899999999999999875422 2334443 332 467889
Q ss_pred EEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHh
Q 017338 160 LVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (373)
Q Consensus 160 VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~ 198 (373)
||+||..|.+ +.++++.|+.+||++|++|+||+.+|++
T Consensus 59 ivv~c~~g~~-s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 59 YVLTCDGSLL-ARFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred EEEEeCChHH-HHHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 9999997665 7778888999999999999999999963
No 64
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.72 E-value=1.5e-17 Score=130.08 Aligned_cols=89 Identities=22% Similarity=0.333 Sum_probs=74.1
Q ss_pred ccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 017338 78 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENK 157 (373)
Q Consensus 78 is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi~~~ 157 (373)
++++++.++++ ++.+|||+| +.++|..||||||+|+|+..+ ...+.. ++++
T Consensus 1 ~~~~e~~~~~~-~~~~iiD~R---------~~~~~~~~hipgA~~ip~~~~-----------------~~~~~~--~~~~ 51 (90)
T cd01524 1 VQWHELDNYRA-DGVTLIDVR---------TPQEFEKGHIKGAINIPLDEL-----------------RDRLNE--LPKD 51 (90)
T ss_pred CCHHHHHHHhc-CCCEEEECC---------CHHHHhcCCCCCCEeCCHHHH-----------------HHHHHh--cCCC
Confidence 57899999884 477899996 568999999999999998653 333333 4678
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHH
Q 017338 158 DGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (373)
Q Consensus 158 ~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~ 197 (373)
++||+||..|.+ +..++..|+.+|+ ++++|+||+.+|+
T Consensus 52 ~~vvl~c~~g~~-a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 52 KEIIVYCAVGLR-GYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred CcEEEEcCCChh-HHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 899999997654 8889999999999 9999999999996
No 65
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.72 E-value=1.9e-17 Score=130.73 Aligned_cols=91 Identities=33% Similarity=0.467 Sum_probs=77.1
Q ss_pred ccHHHHHHhcCC-CCeEEEEeecCCCCCCCCChhhhhh--CCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCC
Q 017338 78 VSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQV--AHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 154 (373)
Q Consensus 78 is~~~l~~~l~~-~~~~iiDvR~~~~~~~r~~~~ey~~--gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi 154 (373)
|+++++.+++++ .+++|||+| +..+|.. ||||||+|+|+..+. +.+.. +
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR---------~~~e~~~~~~hi~ga~~ip~~~~~-----------------~~~~~--~ 53 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVR---------DPASYAALPDHIPGAIHLDEDSLD-----------------DWLGD--L 53 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECC---------CHHHHhcccCCCCCCeeCCHHHHH-----------------HHHhh--c
Confidence 788999998876 569999996 4579999 999999999987542 23333 4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHH
Q 017338 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (373)
Q Consensus 155 ~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~ 197 (373)
+++++||+||..|. ++.++++.|+.+||++|++|+||+.+|+
T Consensus 54 ~~~~~ivv~c~~g~-~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 54 DRDRPVVVYCYHGN-SSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred CCCCCEEEEeCCCC-hHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 68899999999665 4999999999999999999999999996
No 66
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.71 E-value=2.9e-17 Score=135.06 Aligned_cols=103 Identities=16% Similarity=0.110 Sum_probs=83.2
Q ss_pred ccHHHHHHhcCC-CCeEEEEeecCCCCCCCCChhhhh-hCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCC
Q 017338 78 VSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQ-VAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (373)
Q Consensus 78 is~~~l~~~l~~-~~~~iiDvR~~~~~~~r~~~~ey~-~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi~ 155 (373)
||++++.+++++ ++.+|||+| +..+|+ .||||||+|+|+..+.. ..++ +.|...+..+. +
T Consensus 1 is~~el~~~l~~~~~~~vIDvR---------~~~e~~~~ghIpgA~~ip~~~~~~-------~~~~-~~~~~~l~~~~-~ 62 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVR---------TEAEWKFVGGVPDAVHVAWQVYPD-------MEIN-PNFLAELEEKV-G 62 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECC---------CHHHHhcccCCCCceecchhhccc-------cccC-HHHHHHHHhhC-C
Confidence 688999999987 579999996 458999 99999999999987542 1122 23444555543 6
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhC
Q 017338 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS 199 (373)
Q Consensus 156 ~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~ 199 (373)
++++||+||..|.+ +.++++.|+.+||++++.|.||+.+|+..
T Consensus 63 ~~~~ivv~C~~G~r-s~~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 63 KDRPVLLLCRSGNR-SIAAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred CCCeEEEEcCCCcc-HHHHHHHHHHCCCCeEEECcCceecCCCC
Confidence 78999999997754 88999999999999999999999999764
No 67
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.71 E-value=3e-17 Score=134.06 Aligned_cols=99 Identities=25% Similarity=0.371 Sum_probs=78.0
Q ss_pred ccCHHHHHHHhhC--CCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCC
Q 017338 245 IWTLEQVKRNIEE--GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 322 (373)
Q Consensus 245 ~is~~el~~~~~~--~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~ 322 (373)
.|+++++.+.+.. ++.+|||+|++ || ..||||||+|+|+..+.. .+.++....++++
T Consensus 3 ~is~~~l~~~~~~~~~~~~iiDvR~~-e~-----------~~~hi~gA~~ip~~~l~~---------~~~~~~~~~~~~~ 61 (113)
T cd01531 3 YISPAQLKGWIRNGRPPFQVVDVRDE-DY-----------AGGHIKGSWHYPSTRFKA---------QLNQLVQLLSGSK 61 (113)
T ss_pred cCCHHHHHHHHHcCCCCEEEEEcCCc-cc-----------CCCcCCCCEecCHHHHhh---------CHHHHHHHHhcCC
Confidence 4788999998876 45789999999 99 789999999999987642 2233333335678
Q ss_pred CCcEEEEcC-CchHHHHHHHHHHH--------cCCCCceeecccHHHHhcC
Q 017338 323 EKPVVTACG-TGVTACILALGLNR--------LGKHDVAVYDGSWTEWGAQ 364 (373)
Q Consensus 323 ~~~IvvyC~-~G~ra~~a~~~L~~--------~G~~~v~~~~GG~~~W~~~ 364 (373)
+++||+||. +|.|+..++..|.+ .|+.+|++++||+.+|.+.
T Consensus 62 ~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 62 KDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred CCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 899999998 67787777665533 4999999999999999864
No 68
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.71 E-value=5.3e-17 Score=138.42 Aligned_cols=96 Identities=30% Similarity=0.382 Sum_probs=78.6
Q ss_pred HHHhcCC-CCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCeEE
Q 017338 83 LHANLRE-PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLV 161 (373)
Q Consensus 83 l~~~l~~-~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi~~~~~VV 161 (373)
|.+++.. .+++|||+| +..+|..||||||+|+|... |.+.+..++ ++.+||
T Consensus 2 l~~~l~~~~~~~ivDvR---------~~~e~~~gHIpgAi~~~~~~-----------------l~~~l~~l~--~~~~vV 53 (145)
T cd01535 2 LAAWLGEGGQTAVVDVT---------ASANYVKRHIPGAWWVLRAQ-----------------LAQALEKLP--AAERYV 53 (145)
T ss_pred hHHHHhCCCCeEEEECC---------CHHHHHcCCCCCceeCCHHH-----------------HHHHHHhcC--CCCCEE
Confidence 3444443 358999996 45899999999999997643 555666664 568899
Q ss_pred EEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcccCC
Q 017338 162 VYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSA 207 (373)
Q Consensus 162 vy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~~~ 207 (373)
+||..+. .|..+++.|+..|+++|++|+||+.+|+++|+|+++..
T Consensus 54 v~c~~g~-~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~~ 98 (145)
T cd01535 54 LTCGSSL-LARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESGE 98 (145)
T ss_pred EEeCCCh-HHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccCC
Confidence 9999764 58899999999999999999999999999999999764
No 69
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.70 E-value=1.4e-17 Score=131.05 Aligned_cols=86 Identities=23% Similarity=0.320 Sum_probs=69.6
Q ss_pred HhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCCCCcEEEEcCCc
Q 017338 254 NIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTG 333 (373)
Q Consensus 254 ~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~IvvyC~~G 333 (373)
++++++.+|||+|++.|| ..||||||+|+|+..+.... ... -.+++++||+||.+|
T Consensus 5 ~~~~~~~~liDvR~~~e~-----------~~~hi~ga~~ip~~~~~~~~------------~~~-~~~~~~~ivl~c~~G 60 (92)
T cd01532 5 LLAREEIALIDVREEDPF-----------AQSHPLWAANLPLSRLELDA------------WVR-IPRRDTPIVVYGEGG 60 (92)
T ss_pred hhcCCCeEEEECCCHHHH-----------hhCCcccCeeCCHHHHHhhh------------Hhh-CCCCCCeEEEEeCCC
Confidence 345567899999999999 78999999999987653210 111 123588999999999
Q ss_pred hH--HHHHHHHHHHcCCCCceeecccHHHHhc
Q 017338 334 VT--ACILALGLNRLGKHDVAVYDGSWTEWGA 363 (373)
Q Consensus 334 ~r--a~~a~~~L~~~G~~~v~~~~GG~~~W~~ 363 (373)
.+ |..+++.|+.+||++|++++||+.+|.+
T Consensus 61 ~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 61 GEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred CchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 86 6788999999999999999999999974
No 70
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.70 E-value=3.6e-17 Score=160.85 Aligned_cols=102 Identities=23% Similarity=0.353 Sum_probs=88.2
Q ss_pred ccCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCCCC
Q 017338 245 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEK 324 (373)
Q Consensus 245 ~is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~ 324 (373)
.++++++.+.+++ +.+|||+|++.|| ..||||||+|+|+..+ ++.+....+++++
T Consensus 4 ~is~~el~~~l~~-~~~ivDvR~~~e~-----------~~ghIpgAi~ip~~~l-------------~~~~~~~~~~~~~ 58 (376)
T PRK08762 4 EISPAEARARAAQ-GAVLIDVREAHER-----------ASGQAEGALRIPRGFL-------------ELRIETHLPDRDR 58 (376)
T ss_pred eeCHHHHHHHHhC-CCEEEECCCHHHH-----------hCCcCCCCEECCHHHH-------------HHHHhhhcCCCCC
Confidence 3688999988865 4899999999999 7899999999998654 2333433457899
Q ss_pred cEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHhcCCCCCCcCC
Q 017338 325 PVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 372 (373)
Q Consensus 325 ~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~~g~Pv~~~ 372 (373)
+||+||.+|.+|..+++.|+.+||++|++|+|||.+|... |+|+++.
T Consensus 59 ~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~-g~p~~~~ 105 (376)
T PRK08762 59 EIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDA-GLPLERP 105 (376)
T ss_pred eEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHHHHhc-CCccccc
Confidence 9999999999999999999999999999999999999988 8999865
No 71
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.70 E-value=5e-17 Score=132.74 Aligned_cols=101 Identities=23% Similarity=0.320 Sum_probs=76.9
Q ss_pred CcccHHHHHHhcCC--CCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 017338 76 PVVSVDWLHANLRE--PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (373)
Q Consensus 76 ~~is~~~l~~~l~~--~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~g 153 (373)
..|++++|.+++.+ ++++|||+| +. +|..||||||+|+|+..+.. .+..+....+
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR---------~~-e~~~~hi~gA~~ip~~~l~~-------------~~~~~~~~~~ 58 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVR---------DE-DYAGGHIKGSWHYPSTRFKA-------------QLNQLVQLLS 58 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcC---------Cc-ccCCCcCCCCEecCHHHHhh-------------CHHHHHHHHh
Confidence 46899999999876 468899996 45 89999999999999987643 2344444556
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHHHH--------cCCCceEEecCCHHHHHhC
Q 017338 154 LENKDGLVVYDGKGIFSAARVWWMFRV--------FGHDRVWVLDGGLPRWRAS 199 (373)
Q Consensus 154 i~~~~~VVvy~~~g~~~a~ra~~~L~~--------~G~~~v~~L~GG~~~W~~~ 199 (373)
.+++++||+||..++.++..++..|.. .|+.+|++|+||+.+|++.
T Consensus 59 ~~~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 59 GSKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred cCCCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 678889999998443335555544432 4999999999999999863
No 72
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.70 E-value=1.4e-17 Score=128.98 Aligned_cols=87 Identities=24% Similarity=0.491 Sum_probs=74.5
Q ss_pred HHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCCCCcEEEEcC
Q 017338 252 KRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACG 331 (373)
Q Consensus 252 ~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~IvvyC~ 331 (373)
.+.+..++..|||+|++.+| ..||||||+|+|+..+.... ...+++++++||+||.
T Consensus 3 ~~~~~~~~~~iiD~R~~~~~-----------~~~~i~ga~~~~~~~~~~~~-------------~~~~~~~~~~vv~~c~ 58 (89)
T cd00158 3 KELLDDEDAVLLDVREPEEY-----------AAGHIPGAINIPLSELEERA-------------ALLELDKDKPIVVYCR 58 (89)
T ss_pred HHHhcCCCeEEEECCCHHHH-----------hccccCCCEecchHHHhhHH-------------HhhccCCCCeEEEEeC
Confidence 34444567999999999999 78999999999997754321 2236789999999999
Q ss_pred CchHHHHHHHHHHHcCCCCceeecccHHHHh
Q 017338 332 TGVTACILALGLNRLGKHDVAVYDGSWTEWG 362 (373)
Q Consensus 332 ~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~ 362 (373)
.|.+|..++..|+.+||.++++|+||+.+|.
T Consensus 59 ~~~~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 59 SGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred CCchHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 9999999999999999999999999999994
No 73
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.70 E-value=4.9e-17 Score=127.87 Aligned_cols=87 Identities=23% Similarity=0.290 Sum_probs=68.7
Q ss_pred hcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEEcC
Q 017338 86 NLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDG 165 (373)
Q Consensus 86 ~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi~~~~~VVvy~~ 165 (373)
++.+++++|||+| +..+|..||||||+|+|+..+.. . ....+ .+++++||+||.
T Consensus 5 ~~~~~~~~liDvR---------~~~e~~~~hi~ga~~ip~~~~~~---------------~-~~~~~-~~~~~~ivl~c~ 58 (92)
T cd01532 5 LLAREEIALIDVR---------EEDPFAQSHPLWAANLPLSRLEL---------------D-AWVRI-PRRDTPIVVYGE 58 (92)
T ss_pred hhcCCCeEEEECC---------CHHHHhhCCcccCeeCCHHHHHh---------------h-hHhhC-CCCCCeEEEEeC
Confidence 4556679999996 45899999999999999876421 0 11111 235889999999
Q ss_pred CCCch-HHHHHHHHHHcCCCceEEecCCHHHHHh
Q 017338 166 KGIFS-AARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (373)
Q Consensus 166 ~g~~~-a~ra~~~L~~~G~~~v~~L~GG~~~W~~ 198 (373)
.|.+. +.++++.|+..||++|++|+||+.+|.+
T Consensus 59 ~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 59 GGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred CCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 87654 6899999999999999999999999974
No 74
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.68 E-value=6.5e-17 Score=129.17 Aligned_cols=80 Identities=16% Similarity=0.263 Sum_probs=68.8
Q ss_pred CcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCCCCcEEEEcCCchHHHH
Q 017338 259 TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACI 338 (373)
Q Consensus 259 ~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~IvvyC~~G~ra~~ 338 (373)
...+||+|+++|| ..||||||+|+|+.++ +..+.+...+++++||+||.+|.+|..
T Consensus 18 ~~~lIDvR~~~ef-----------~~ghIpgAinip~~~l-------------~~~l~~~~~~~~~~vvlyC~~G~rS~~ 73 (101)
T TIGR02981 18 AEHWIDVRIPEQY-----------QQEHIQGAINIPLKEI-------------KEHIATAVPDKNDTVKLYCNAGRQSGM 73 (101)
T ss_pred CCEEEECCCHHHH-----------hcCCCCCCEECCHHHH-------------HHHHHHhCCCCCCeEEEEeCCCHHHHH
Confidence 5679999999999 7899999999998654 334444456778899999999999999
Q ss_pred HHHHHHHcCCCCceeecccHHHHhc
Q 017338 339 LALGLNRLGKHDVAVYDGSWTEWGA 363 (373)
Q Consensus 339 a~~~L~~~G~~~v~~~~GG~~~W~~ 363 (373)
++..|+.+||++|+++ ||+.+|.-
T Consensus 74 aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 74 AKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred HHHHHHHcCCCeEEec-CCHHHhhh
Confidence 9999999999999986 99999964
No 75
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.68 E-value=9.4e-17 Score=129.81 Aligned_cols=96 Identities=25% Similarity=0.470 Sum_probs=82.0
Q ss_pred HHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCC-CcccCcccccccCCCCCCHHHHHHHHHHcCCCCCCcEEEEc
Q 017338 252 KRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPG-SKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTAC 330 (373)
Q Consensus 252 ~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpG-A~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~IvvyC 330 (373)
......++.+|||+|++.|| ..+|||| ++|+|..++....... .++++++|||||
T Consensus 13 ~~~~~~~~~~liDvR~~~e~-----------~~~~i~~~~~~ip~~~~~~~~~~~-------------~~~~~~~ivv~C 68 (110)
T COG0607 13 ALLLAGEDAVLLDVREPEEY-----------ERGHIPGAAINIPLSELKAAENLL-------------ELPDDDPIVVYC 68 (110)
T ss_pred HHhhccCCCEEEeccChhHh-----------hhcCCCcceeeeecccchhhhccc-------------ccCCCCeEEEEe
Confidence 33344567999999999999 8999999 9999999886543211 046899999999
Q ss_pred CCchHHHHHHHHHHHcCCCCceeecccHHHHhcCCCCCCcCC
Q 017338 331 GTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 372 (373)
Q Consensus 331 ~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~~g~Pv~~~ 372 (373)
.+|.||..++..|+.+||.++++++||+.+|... ++|++.+
T Consensus 69 ~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~-~~~~~~~ 109 (110)
T COG0607 69 ASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGA-GLPLVRG 109 (110)
T ss_pred CCCCChHHHHHHHHHcCCccccccCCcHHHHHhc-CCCcccC
Confidence 9999999999999999999888999999999999 8998764
No 76
>PRK01415 hypothetical protein; Validated
Probab=99.67 E-value=1.5e-16 Score=145.97 Aligned_cols=102 Identities=11% Similarity=0.111 Sum_probs=86.5
Q ss_pred CccccCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHH-HcCC
Q 017338 242 PHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFE-QEGI 320 (373)
Q Consensus 242 ~~~~is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~-~~gi 320 (373)
....|+++++.+++++++.+|||+|++.|| ..||||||+|+|...+.+ +.+.+. ...+
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~-----------~~Ghi~gAinip~~~f~e----------~~~~~~~~~~~ 168 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTRNDYEV-----------EVGTFKSAINPNTKTFKQ----------FPAWVQQNQEL 168 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCHHHH-----------hcCCcCCCCCCChHHHhh----------hHHHHhhhhhh
Confidence 445789999999999889999999999999 789999999999876532 111111 1236
Q ss_pred CCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHhcC
Q 017338 321 SLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 364 (373)
Q Consensus 321 ~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~ 364 (373)
+++++|++||.+|.||..++..|+..||++|+.|.||+.+|...
T Consensus 169 ~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~ 212 (247)
T PRK01415 169 LKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYLED 212 (247)
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHHHh
Confidence 78999999999999999999999999999999999999999875
No 77
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.67 E-value=1e-16 Score=128.64 Aligned_cols=80 Identities=19% Similarity=0.305 Sum_probs=69.3
Q ss_pred CCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCCCCcEEEEcCCchHHH
Q 017338 258 GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTAC 337 (373)
Q Consensus 258 ~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~IvvyC~~G~ra~ 337 (373)
.+-+|||+|+++|| +.||||||+|+|+.+ +.+.+.+.+.+++++||+||.+|.+|.
T Consensus 19 ~~~~lIDvR~~~ef-----------~~ghIpGAiniP~~~-------------l~~~l~~l~~~~~~~IVlyC~~G~rS~ 74 (104)
T PRK10287 19 AAEHWIDVRVPEQY-----------QQEHVQGAINIPLKE-------------VKERIATAVPDKNDTVKLYCNAGRQSG 74 (104)
T ss_pred CCCEEEECCCHHHH-----------hcCCCCccEECCHHH-------------HHHHHHhcCCCCCCeEEEEeCCChHHH
Confidence 34579999999999 789999999999865 334455556677889999999999999
Q ss_pred HHHHHHHHcCCCCceeecccHHHHh
Q 017338 338 ILALGLNRLGKHDVAVYDGSWTEWG 362 (373)
Q Consensus 338 ~a~~~L~~~G~~~v~~~~GG~~~W~ 362 (373)
.++..|..+||++|++ .||+.+|.
T Consensus 75 ~aa~~L~~~G~~~v~~-~GG~~~~~ 98 (104)
T PRK10287 75 QAKEILSEMGYTHAEN-AGGLKDIA 98 (104)
T ss_pred HHHHHHHHcCCCeEEe-cCCHHHHh
Confidence 9999999999999987 69999996
No 78
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.67 E-value=2e-16 Score=129.13 Aligned_cols=99 Identities=21% Similarity=0.348 Sum_probs=72.8
Q ss_pred CcccHHHHHHhcCCC------CeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHH
Q 017338 76 PVVSVDWLHANLREP------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAV 149 (373)
Q Consensus 76 ~~is~~~l~~~l~~~------~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l 149 (373)
..|++++|++++.++ +++||||| +. +|..||||||+|+|+..+.. .+.+.+
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR---------~~-ef~~ghipgAi~ip~~~~~~-------------~~~~~~ 58 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLR---------RD-DYEGGHIKGSINLPAQSCYQ-------------TLPQVY 58 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECC---------ch-hcCCCcccCceecchhHHHH-------------HHHHHH
Confidence 358999999999874 58999996 44 89999999999999987543 233333
Q ss_pred HHcCCCCCCeEEEEcCCCCchHHHHHHHHH----HcCC--CceEEecCCHHHHH
Q 017338 150 SALGLENKDGLVVYDGKGIFSAARVWWMFR----VFGH--DRVWVLDGGLPRWR 197 (373)
Q Consensus 150 ~~~gi~~~~~VVvy~~~g~~~a~ra~~~L~----~~G~--~~v~~L~GG~~~W~ 197 (373)
..+...+.++||+||..++.++++++..|. ..|+ .++++|+||+.+|.
T Consensus 59 ~~~~~~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 59 ALFSLAGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred HHhhhcCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 433334567899999975444666653333 3465 78999999999995
No 79
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.66 E-value=2.1e-16 Score=122.42 Aligned_cols=88 Identities=31% Similarity=0.539 Sum_probs=72.8
Q ss_pred HHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCeEEE
Q 017338 83 LHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVV 162 (373)
Q Consensus 83 l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi~~~~~VVv 162 (373)
+.+++.+++.+|||+| +..+|..||||||+|+|+..+.. .....+++++++||+
T Consensus 2 ~~~~~~~~~~~iiD~R---------~~~~~~~~~i~ga~~~~~~~~~~-----------------~~~~~~~~~~~~vv~ 55 (89)
T cd00158 2 LKELLDDEDAVLLDVR---------EPEEYAAGHIPGAINIPLSELEE-----------------RAALLELDKDKPIVV 55 (89)
T ss_pred hHHHhcCCCeEEEECC---------CHHHHhccccCCCEecchHHHhh-----------------HHHhhccCCCCeEEE
Confidence 4455556689999997 45889999999999999986532 113457789999999
Q ss_pred EcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHH
Q 017338 163 YDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (373)
Q Consensus 163 y~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~ 197 (373)
||..+. .+.++++.|+.+||+++++|+||+.+|.
T Consensus 56 ~c~~~~-~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 56 YCRSGN-RSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred EeCCCc-hHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 999765 4899999999999999999999999994
No 80
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.66 E-value=3.1e-16 Score=128.03 Aligned_cols=98 Identities=18% Similarity=0.313 Sum_probs=72.9
Q ss_pred ccCHHHHHHHhhCC------CcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHc
Q 017338 245 IWTLEQVKRNIEEG------TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQE 318 (373)
Q Consensus 245 ~is~~el~~~~~~~------~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~ 318 (373)
.++++++++++.++ +.+|||+|++ || ..||||||+|+|+..+.+. +...+...
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef-----------~~ghipgAi~ip~~~~~~~---------~~~~~~~~ 61 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DY-----------EGGHIKGSINLPAQSCYQT---------LPQVYALF 61 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECCch-hc-----------CCCcccCceecchhHHHHH---------HHHHHHHh
Confidence 46889999998764 5789999999 99 7899999999999775421 22233322
Q ss_pred CCCCCCcEEEEcCC-chHHHHHHHHH----HHcCC--CCceeecccHHHHhc
Q 017338 319 GISLEKPVVTACGT-GVTACILALGL----NRLGK--HDVAVYDGSWTEWGA 363 (373)
Q Consensus 319 gi~~~~~IvvyC~~-G~ra~~a~~~L----~~~G~--~~v~~~~GG~~~W~~ 363 (373)
...+.++||+||.+ |.||..++..| +..|| .++++++||+.+|.+
T Consensus 62 ~~~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~~ 113 (113)
T cd01443 62 SLAGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWYH 113 (113)
T ss_pred hhcCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhcC
Confidence 23456789999986 67877766443 34575 689999999999963
No 81
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.65 E-value=2.1e-16 Score=132.64 Aligned_cols=109 Identities=27% Similarity=0.392 Sum_probs=81.1
Q ss_pred cccHHHHHHhcCC--CCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCC---C--CCCCCCCHHHHHHHH
Q 017338 77 VVSVDWLHANLRE--PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTT---N--LPHMLPSEEAFAAAV 149 (373)
Q Consensus 77 ~is~~~l~~~l~~--~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~---~--~~~~l~~~e~~~~~l 149 (373)
+|++++|.+++.. ++++|||+| +..+|..||||||+|+|+..+..... . ...+++..+.++.+
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR---------~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 70 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCR---------PFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRL- 70 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECC---------CHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHH-
Confidence 4899999999975 479999997 55899999999999999986432110 0 11245566655543
Q ss_pred HHcCCCCCCeEEEEcCCCC-----chHHHHHHHHHHcCC-----CceEEecCCHHHHHh
Q 017338 150 SALGLENKDGLVVYDGKGI-----FSAARVWWMFRVFGH-----DRVWVLDGGLPRWRA 198 (373)
Q Consensus 150 ~~~gi~~~~~VVvy~~~g~-----~~a~ra~~~L~~~G~-----~~v~~L~GG~~~W~~ 198 (373)
... ++++|||||+.+. ..+++++|+++.+++ .+|++|+||+.+|++
T Consensus 71 ~~~---~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~ 126 (132)
T cd01446 71 RRG---ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS 126 (132)
T ss_pred hcC---CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence 332 6789999998765 346777777777776 689999999999975
No 82
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.63 E-value=1.2e-15 Score=145.70 Aligned_cols=102 Identities=22% Similarity=0.333 Sum_probs=85.0
Q ss_pred CCCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHH-HH
Q 017338 73 PKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAV-SA 151 (373)
Q Consensus 73 ~~~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l-~~ 151 (373)
.....|+++++.+++.+++++||||| + ..||..||||||+|+|+..+.+ |...+ +.
T Consensus 109 ~~~~~is~~el~~~l~~~~~vlIDVR--------~-~~E~~~GhI~GAi~ip~~~~~~--------------~~~~l~~~ 165 (314)
T PRK00142 109 NVGTYLKPKEVNELLDDPDVVFIDMR--------N-DYEYEIGHFENAIEPDIETFRE--------------FPPWVEEN 165 (314)
T ss_pred cCCcccCHHHHHHHhcCCCeEEEECC--------C-HHHHhcCcCCCCEeCCHHHhhh--------------hHHHHHHh
Confidence 45678999999999998889999996 4 4899999999999999987643 11122 34
Q ss_pred cCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHh
Q 017338 152 LGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (373)
Q Consensus 152 ~gi~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~ 198 (373)
+++.++++||+||..|.+ +..++..|+..||++|+.|+||+.+|..
T Consensus 166 ~~~~kdk~IvvyC~~G~R-s~~aa~~L~~~Gf~~V~~L~GGi~~w~~ 211 (314)
T PRK00142 166 LDPLKDKKVVMYCTGGIR-CEKASAWMKHEGFKEVYQLEGGIITYGE 211 (314)
T ss_pred cCCCCcCeEEEECCCCcH-HHHHHHHHHHcCCCcEEEecchHHHHHH
Confidence 566789999999998776 6777778899999999999999999975
No 83
>PRK01415 hypothetical protein; Validated
Probab=99.63 E-value=1.1e-15 Score=140.32 Aligned_cols=103 Identities=19% Similarity=0.225 Sum_probs=85.3
Q ss_pred CCCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHH-H
Q 017338 73 PKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVS-A 151 (373)
Q Consensus 73 ~~~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~-~ 151 (373)
.....|+++++.+++++++++||||| + ..||..||||||+|+|+..+.+ |.+++. .
T Consensus 109 ~~g~~i~p~e~~~ll~~~~~vvIDVR--------n-~~E~~~Ghi~gAinip~~~f~e--------------~~~~~~~~ 165 (247)
T PRK01415 109 FKGEYIEPKDWDEFITKQDVIVIDTR--------N-DYEVEVGTFKSAINPNTKTFKQ--------------FPAWVQQN 165 (247)
T ss_pred cCccccCHHHHHHHHhCCCcEEEECC--------C-HHHHhcCCcCCCCCCChHHHhh--------------hHHHHhhh
Confidence 35778999999999998899999996 4 4899999999999999887643 222221 2
Q ss_pred cCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhC
Q 017338 152 LGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS 199 (373)
Q Consensus 152 ~gi~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~ 199 (373)
..+.++++|++||..|.+ +..++..|+..||++|+.|.||+.+|.+.
T Consensus 166 ~~~~k~k~Iv~yCtgGiR-s~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~ 212 (247)
T PRK01415 166 QELLKGKKIAMVCTGGIR-CEKSTSLLKSIGYDEVYHLKGGILQYLED 212 (247)
T ss_pred hhhcCCCeEEEECCCChH-HHHHHHHHHHcCCCcEEEechHHHHHHHh
Confidence 335688999999997765 88888999999999999999999999864
No 84
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.60 E-value=1.9e-15 Score=120.68 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=67.7
Q ss_pred CCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEEcCCCCc
Q 017338 90 PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIF 169 (373)
Q Consensus 90 ~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi~~~~~VVvy~~~g~~ 169 (373)
.+..+||+| +.++|..||||||+|+|+.++ ...+..+..+++++||+||..|.+
T Consensus 17 ~~~~lIDvR---------~~~ef~~ghIpgAinip~~~l-----------------~~~l~~~~~~~~~~vvlyC~~G~r 70 (101)
T TIGR02981 17 AAEHWIDVR---------IPEQYQQEHIQGAINIPLKEI-----------------KEHIATAVPDKNDTVKLYCNAGRQ 70 (101)
T ss_pred cCCEEEECC---------CHHHHhcCCCCCCEECCHHHH-----------------HHHHHHhCCCCCCeEEEEeCCCHH
Confidence 357799996 568999999999999998653 345666667788899999998765
Q ss_pred hHHHHHHHHHHcCCCceEEecCCHHHHH
Q 017338 170 SAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (373)
Q Consensus 170 ~a~ra~~~L~~~G~~~v~~L~GG~~~W~ 197 (373)
|..++..|+.+||+++.++ ||+.+|.
T Consensus 71 -S~~aa~~L~~~G~~~v~~~-GG~~~~~ 96 (101)
T TIGR02981 71 -SGMAKDILLDMGYTHAENA-GGIKDIA 96 (101)
T ss_pred -HHHHHHHHHHcCCCeEEec-CCHHHhh
Confidence 8899999999999999985 9999996
No 85
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.60 E-value=1.8e-15 Score=140.58 Aligned_cols=101 Identities=17% Similarity=0.272 Sum_probs=82.6
Q ss_pred cccCHHHHHHHhhCC------CcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHH
Q 017338 244 LIWTLEQVKRNIEEG------TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQ 317 (373)
Q Consensus 244 ~~is~~el~~~~~~~------~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~ 317 (373)
..++++++.+.+++. +.+|||||++.|| ..||||||+|+|+.++.+. ++.+++...
T Consensus 110 ~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~-----------~~Ghi~GAiniPl~~f~~~------~~~l~~~~~- 171 (257)
T PRK05320 110 PSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEV-----------DVGTFDGALDYRIDKFTEF------PEALAAHRA- 171 (257)
T ss_pred ceeCHHHHHHHHhccccccCCCeEEEECCCHHHH-----------ccCccCCCEeCChhHhhhh------HHHHHhhhh-
Confidence 458889998887652 4789999999999 7899999999999776431 122333322
Q ss_pred cCCCCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHhcC
Q 017338 318 EGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 364 (373)
Q Consensus 318 ~gi~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~ 364 (373)
.+ ++++||+||.+|.||..++..|+..||++|+.+.||+.+|.+.
T Consensus 172 -~~-kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 172 -DL-AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred -hc-CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 13 7899999999999999999999999999999999999999865
No 86
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.59 E-value=4.6e-15 Score=119.05 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=68.7
Q ss_pred CCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEEcCCCCc
Q 017338 90 PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIF 169 (373)
Q Consensus 90 ~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi~~~~~VVvy~~~g~~ 169 (373)
.+-+|||+| +.++|+.||||||+|+|+.. |.+.++.++.+++++||+||..|.
T Consensus 19 ~~~~lIDvR---------~~~ef~~ghIpGAiniP~~~-----------------l~~~l~~l~~~~~~~IVlyC~~G~- 71 (104)
T PRK10287 19 AAEHWIDVR---------VPEQYQQEHVQGAINIPLKE-----------------VKERIATAVPDKNDTVKLYCNAGR- 71 (104)
T ss_pred CCCEEEECC---------CHHHHhcCCCCccEECCHHH-----------------HHHHHHhcCCCCCCeEEEEeCCCh-
Confidence 356799996 56999999999999999864 444677788888899999999765
Q ss_pred hHHHHHHHHHHcCCCceEEecCCHHHHHh
Q 017338 170 SAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (373)
Q Consensus 170 ~a~ra~~~L~~~G~~~v~~L~GG~~~W~~ 198 (373)
+|..+++.|..+||++|++ .||+.+|.-
T Consensus 72 rS~~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 72 QSGQAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred HHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 4899999999999999987 699999963
No 87
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.59 E-value=1.8e-15 Score=149.33 Aligned_cols=99 Identities=23% Similarity=0.452 Sum_probs=85.3
Q ss_pred CccccCHHHHHHHhhCC-CcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCC
Q 017338 242 PHLIWTLEQVKRNIEEG-TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGI 320 (373)
Q Consensus 242 ~~~~is~~el~~~~~~~-~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi 320 (373)
....++++|+.+.++++ +.+|||+|+++|| ..||||||+|+|+..+... +. +. .+
T Consensus 285 ~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef-----------~~ghIpGAinip~~~l~~~-------~~----~~--~l 340 (392)
T PRK07878 285 AGSTITPRELKEWLDSGKKIALIDVREPVEW-----------DIVHIPGAQLIPKSEILSG-------EA----LA--KL 340 (392)
T ss_pred CCCccCHHHHHHHHhCCCCeEEEECCCHHHH-----------hcCCCCCCEEcChHHhcch-------hH----Hh--hC
Confidence 44578999999988754 5789999999999 7999999999999876531 11 12 36
Q ss_pred CCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHhcC
Q 017338 321 SLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 364 (373)
Q Consensus 321 ~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~ 364 (373)
+++++||+||.+|.+|..+++.|+..||++|++|+||+.+|...
T Consensus 341 ~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~ 384 (392)
T PRK07878 341 PQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQ 384 (392)
T ss_pred CCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHh
Confidence 88999999999999999999999999999999999999999887
No 88
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.5e-14 Score=116.82 Aligned_cols=98 Identities=30% Similarity=0.515 Sum_probs=79.0
Q ss_pred HHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcC-ceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCe
Q 017338 81 DWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPG-ALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDG 159 (373)
Q Consensus 81 ~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpG-Ai~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi~~~~~ 159 (373)
.........++.+||||| ++ .||+.+|||| ++|+|+..+.... .....+++++
T Consensus 10 ~~~~~~~~~~~~~liDvR--------~~-~e~~~~~i~~~~~~ip~~~~~~~~-----------------~~~~~~~~~~ 63 (110)
T COG0607 10 DEAALLLAGEDAVLLDVR--------EP-EEYERGHIPGAAINIPLSELKAAE-----------------NLLELPDDDP 63 (110)
T ss_pred HHHHHhhccCCCEEEecc--------Ch-hHhhhcCCCcceeeeecccchhhh-----------------cccccCCCCe
Confidence 333344445579999995 55 8999999999 9999999875411 0111568899
Q ss_pred EEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCccc
Q 017338 160 LVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVES 205 (373)
Q Consensus 160 VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~~ 205 (373)
+|+||..|.+ +..++..|+..||++++.++||+.+|...++++..
T Consensus 64 ivv~C~~G~r-S~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~ 108 (110)
T COG0607 64 IVVYCASGVR-SAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVR 108 (110)
T ss_pred EEEEeCCCCC-hHHHHHHHHHcCCccccccCCcHHHHHhcCCCccc
Confidence 9999998876 88899999999999888999999999999998865
No 89
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.57 E-value=1e-14 Score=135.58 Aligned_cols=101 Identities=24% Similarity=0.341 Sum_probs=80.4
Q ss_pred CCCcccHHHHHHhcCC------CCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHH
Q 017338 74 KEPVVSVDWLHANLRE------PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAA 147 (373)
Q Consensus 74 ~~~~is~~~l~~~l~~------~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~ 147 (373)
....|+++++.+++.+ ++++||||| +..||+.||||||+|+|+..+.+ |..
T Consensus 108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR---------~~~E~~~Ghi~GAiniPl~~f~~--------------~~~ 164 (257)
T PRK05320 108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTR---------NAFEVDVGTFDGALDYRIDKFTE--------------FPE 164 (257)
T ss_pred cCceeCHHHHHHHHhccccccCCCeEEEECC---------CHHHHccCccCCCEeCChhHhhh--------------hHH
Confidence 4567999999998865 248999996 45899999999999999987643 222
Q ss_pred HHHHc-CCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHh
Q 017338 148 AVSAL-GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (373)
Q Consensus 148 ~l~~~-gi~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~ 198 (373)
++... ...++++||+||..|.+ +..++..|+..||++|+.|.||+.+|.+
T Consensus 165 ~l~~~~~~~kdk~IvvyC~~G~R-s~~Aa~~L~~~Gf~~V~~L~GGi~~w~~ 215 (257)
T PRK05320 165 ALAAHRADLAGKTVVSFCTGGIR-CEKAAIHMQEVGIDNVYQLEGGILKYFE 215 (257)
T ss_pred HHHhhhhhcCCCeEEEECCCCHH-HHHHHHHHHHcCCcceEEeccCHHHHHH
Confidence 22221 11268899999998775 8888999999999999999999999975
No 90
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.57 E-value=4.6e-15 Score=124.51 Aligned_cols=104 Identities=19% Similarity=0.195 Sum_probs=76.0
Q ss_pred cCHHHHHHHhhC--CCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccC---------CCCCCHHHHHHH
Q 017338 246 WTLEQVKRNIEE--GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS---------QTLLPADELKKR 314 (373)
Q Consensus 246 is~~el~~~~~~--~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~---------~~~~~~~~l~~~ 314 (373)
|+++++.+.+.. ++.+|||+|+..+| ..||||||+|+|+..+.... ..+.+ ++.++.
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~-----------~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 69 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEY-----------SSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSC-PEDRDR 69 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHH-----------hhCcccCcEecChHHHHHHhhcccchhhhhhcCC-HHHHHH
Confidence 678999999875 46899999999999 78999999999998654211 01222 233344
Q ss_pred HHHcCCCCCCcEEEEcCCchH---------HHHHHHHHHH--cCCCCceeecccHHHHhcC
Q 017338 315 FEQEGISLEKPVVTACGTGVT---------ACILALGLNR--LGKHDVAVYDGSWTEWGAQ 364 (373)
Q Consensus 315 ~~~~gi~~~~~IvvyC~~G~r---------a~~a~~~L~~--~G~~~v~~~~GG~~~W~~~ 364 (373)
+.. . ++++|||||..|.+ +..++..|.. .|+.+|++++||+.+|...
T Consensus 70 l~~--~-~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~ 127 (132)
T cd01446 70 LRR--G-ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE 127 (132)
T ss_pred Hhc--C-CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence 443 2 67899999988764 4444445555 3567899999999999775
No 91
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.56 E-value=1.4e-14 Score=142.96 Aligned_cols=102 Identities=21% Similarity=0.331 Sum_probs=83.7
Q ss_pred CCCcccHHHHHHhcCCC-CeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHc
Q 017338 74 KEPVVSVDWLHANLREP-DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (373)
Q Consensus 74 ~~~~is~~~l~~~l~~~-~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~ 152 (373)
....|+++++.++++++ +++|||+| +.++|..||||||+|+|+..+.. .+ .+.
T Consensus 285 ~~~~Is~~el~~~l~~~~~~~lIDvR---------~~~ef~~ghIpGAinip~~~l~~-----------~~----~~~-- 338 (392)
T PRK07878 285 AGSTITPRELKEWLDSGKKIALIDVR---------EPVEWDIVHIPGAQLIPKSEILS-----------GE----ALA-- 338 (392)
T ss_pred CCCccCHHHHHHHHhCCCCeEEEECC---------CHHHHhcCCCCCCEEcChHHhcc-----------hh----HHh--
Confidence 45679999999998764 58999996 46899999999999999987532 01 122
Q ss_pred CCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCC
Q 017338 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYD 202 (373)
Q Consensus 153 gi~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~p 202 (373)
.++++++||+||..|.+ |.++++.|+..||++|++|+||+.+|.++..+
T Consensus 339 ~l~~d~~iVvyC~~G~r-S~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 339 KLPQDRTIVLYCKTGVR-SAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred hCCCCCcEEEEcCCChH-HHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 34688999999997765 89999999999999999999999999876543
No 92
>PRK07411 hypothetical protein; Validated
Probab=99.55 E-value=6.7e-15 Score=145.05 Aligned_cols=99 Identities=19% Similarity=0.400 Sum_probs=82.2
Q ss_pred cccCHHHHHHHhhCC--CcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCC
Q 017338 244 LIWTLEQVKRNIEEG--TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGIS 321 (373)
Q Consensus 244 ~~is~~el~~~~~~~--~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~ 321 (373)
..++.+|+.++++++ +.+|||+|++.|| ..||||||+|+|+.++.... ..+++. .+.
T Consensus 282 ~~Is~~el~~~l~~~~~~~vlIDVR~~~E~-----------~~ghIpGAiniP~~~l~~~~----~~~~l~------~l~ 340 (390)
T PRK07411 282 PEMTVTELKALLDSGADDFVLIDVRNPNEY-----------EIARIPGSVLVPLPDIENGP----GVEKVK------ELL 340 (390)
T ss_pred CccCHHHHHHHHhCCCCCeEEEECCCHHHh-----------ccCcCCCCEEccHHHhhccc----chHHHh------hcC
Confidence 468999999988654 4789999999999 78999999999998875421 112222 256
Q ss_pred CCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHhcC
Q 017338 322 LEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 364 (373)
Q Consensus 322 ~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~ 364 (373)
++++||+||.+|.||..++..|+.+||++ +.++||+.+|..+
T Consensus 341 ~d~~IVvyC~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~ 382 (390)
T PRK07411 341 NGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSRE 382 (390)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCe-EEecchHHHHHHh
Confidence 78999999999999999999999999985 5799999999887
No 93
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.52 E-value=1.9e-14 Score=140.27 Aligned_cols=95 Identities=21% Similarity=0.382 Sum_probs=80.0
Q ss_pred ccccCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCC
Q 017338 243 HLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 322 (373)
Q Consensus 243 ~~~is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~ 322 (373)
...++.+++.+.. .+.+|||+|+++|| ..||||||+|+|+.++..... ...+++
T Consensus 260 ~~~i~~~~~~~~~--~~~~IIDVR~~~ef-----------~~ghIpgAinip~~~l~~~~~-------------~~~~~~ 313 (355)
T PRK05597 260 GEVLDVPRVSALP--DGVTLIDVREPSEF-----------AAYSIPGAHNVPLSAIREGAN-------------PPSVSA 313 (355)
T ss_pred ccccCHHHHHhcc--CCCEEEECCCHHHH-----------ccCcCCCCEEeCHHHhhhccc-------------cccCCC
Confidence 3467888888553 35789999999999 789999999999987654211 113678
Q ss_pred CCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHhc
Q 017338 323 EKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGA 363 (373)
Q Consensus 323 ~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~ 363 (373)
+++||+||.+|.+|..+++.|+.+||++|++|+||+.+|.+
T Consensus 314 ~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 314 GDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 89999999999999999999999999999999999999965
No 94
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.52 E-value=1.9e-14 Score=139.02 Aligned_cols=105 Identities=18% Similarity=0.315 Sum_probs=76.5
Q ss_pred HHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccC---------C---------CCCCHH
Q 017338 248 LEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS---------Q---------TLLPAD 309 (373)
Q Consensus 248 ~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~---------~---------~~~~~~ 309 (373)
.+++.+.+. ++.+|||||++.|| ..||||||+|+|+.+..+.. + .+.+ .
T Consensus 5 ~~~~~~~~~-~~~~lIDVRsp~Ef-----------~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~-~ 71 (345)
T PRK11784 5 AQDFRALFL-NDTPLIDVRSPIEF-----------AEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVA-G 71 (345)
T ss_pred HHHHHHHHh-CCCEEEECCCHHHH-----------hcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcc-h
Confidence 455555543 46899999999999 78999999999996533210 1 1111 2
Q ss_pred HHHHHHHHc-C-C-CCCCcEEEEc-CCchHHHHHHHHHHHcCCCCceeecccHHHHhcCCCC
Q 017338 310 ELKKRFEQE-G-I-SLEKPVVTAC-GTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDT 367 (373)
Q Consensus 310 ~l~~~~~~~-g-i-~~~~~IvvyC-~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~~g~ 367 (373)
++.+.+.+. + + +++++||+|| .+|.||..+++.|+.+|| +|++++||+.+|... ++
T Consensus 72 ~l~~~~~~~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~-~~ 131 (345)
T PRK11784 72 NIAAHREEAWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRF-VI 131 (345)
T ss_pred hHHHHHHHHHHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHh-hH
Confidence 233332221 1 2 3789999999 578999999999999999 699999999999876 44
No 95
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.48 E-value=4.1e-14 Score=134.78 Aligned_cols=98 Identities=23% Similarity=0.285 Sum_probs=71.1
Q ss_pred CcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccC--CC-CC--------------CHHHHHHHHHHc--C
Q 017338 259 TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS--QT-LL--------------PADELKKRFEQE--G 319 (373)
Q Consensus 259 ~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~--~~-~~--------------~~~~l~~~~~~~--g 319 (373)
...|||||++.|| ..||||||+|+|+.+..... ++ ++ ....+...+.+. -
T Consensus 2 ~~~liDVRsp~Ef-----------~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~ 70 (311)
T TIGR03167 2 FDPLIDVRSPAEF-----------AEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAF 70 (311)
T ss_pred CCEEEECCCHHHH-----------hcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhh
Confidence 4579999999999 78999999999995432211 11 11 011233333322 2
Q ss_pred CCCCCcEEEEc-CCchHHHHHHHHHHHcCCCCceeecccHHHHhcCCCCCC
Q 017338 320 ISLEKPVVTAC-GTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPV 369 (373)
Q Consensus 320 i~~~~~IvvyC-~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~~g~Pv 369 (373)
.+++..||+|| .+|.||..+++.|+.+|| +|++++||+.+|... +++.
T Consensus 71 ~~~~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~-~~~~ 119 (311)
T TIGR03167 71 ADGPPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRF-VIDQ 119 (311)
T ss_pred cCCCCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHh-hhhh
Confidence 34455699999 579999999999999999 699999999999887 5544
No 96
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.47 E-value=9.6e-14 Score=135.31 Aligned_cols=96 Identities=23% Similarity=0.360 Sum_probs=77.3
Q ss_pred CCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCC
Q 017338 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 154 (373)
Q Consensus 75 ~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi 154 (373)
...++++++.+... +.+|||+| +.++|..||||||+|+|+..+... +....+
T Consensus 260 ~~~i~~~~~~~~~~--~~~IIDVR---------~~~ef~~ghIpgAinip~~~l~~~-----------------~~~~~~ 311 (355)
T PRK05597 260 GEVLDVPRVSALPD--GVTLIDVR---------EPSEFAAYSIPGAHNVPLSAIREG-----------------ANPPSV 311 (355)
T ss_pred ccccCHHHHHhccC--CCEEEECC---------CHHHHccCcCCCCEEeCHHHhhhc-----------------cccccC
Confidence 34688899885543 57899996 458999999999999999875431 111235
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhC
Q 017338 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS 199 (373)
Q Consensus 155 ~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~ 199 (373)
+++++||+||..|. ++.++++.|+.+||++|++|+||+.+|.++
T Consensus 312 ~~~~~IvvyC~~G~-rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~~ 355 (355)
T PRK05597 312 SAGDEVVVYCAAGV-RSAQAVAILERAGYTGMSSLDGGIEGWLDS 355 (355)
T ss_pred CCCCeEEEEcCCCH-HHHHHHHHHHHcCCCCEEEecCcHHHHhhC
Confidence 67889999999776 489999999999999999999999999753
No 97
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.45 E-value=3.9e-13 Score=123.24 Aligned_cols=126 Identities=19% Similarity=0.257 Sum_probs=101.8
Q ss_pred cccCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccC----CCCCCHHHHHHHHHHcC
Q 017338 244 LIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS----QTLLPADELKKRFEQEG 319 (373)
Q Consensus 244 ~~is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~----~~~~~~~~l~~~~~~~g 319 (373)
.+++.+++.+++.+...+|||+---- .........++..-|||||.++.++.+.+.. .++...+.+++..+.+|
T Consensus 5 ~iv~~~~v~~~~~~~~~~iLDaSw~~--~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lG 82 (286)
T KOG1529|consen 5 SIVSVKWVMENLGNHGLRILDASWYF--PPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLG 82 (286)
T ss_pred cccChHHHHHhCcCCCeEEEeeeeec--CchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcC
Confidence 46889999999988889999985200 0000011112256799999999999886653 46778899999999999
Q ss_pred CCCCCcEEEEcC--Cch-HHHHHHHHHHHcCCCCceeecccHHHHhcCCCCCCcCC
Q 017338 320 ISLEKPVVTACG--TGV-TACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 372 (373)
Q Consensus 320 i~~~~~IvvyC~--~G~-ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~~g~Pv~~~ 372 (373)
+++++.+|||.+ .|+ .|++++|.++.+|+.+|.+++||+..|... ++|++++
T Consensus 83 i~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~-g~~~~s~ 137 (286)
T KOG1529|consen 83 VDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAA-GGPVDSS 137 (286)
T ss_pred CCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHc-CCccccc
Confidence 999999999998 776 577999999999999999999999999999 9999875
No 98
>PRK07411 hypothetical protein; Validated
Probab=99.43 E-value=3.5e-13 Score=132.92 Aligned_cols=104 Identities=22% Similarity=0.331 Sum_probs=81.3
Q ss_pred CCCcccHHHHHHhcCCC--CeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHH
Q 017338 74 KEPVVSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSA 151 (373)
Q Consensus 74 ~~~~is~~~l~~~l~~~--~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~ 151 (373)
....|++++|.++++++ +.+|||+| +.++|..||||||+|+|+..+.... ..+++. .
T Consensus 280 ~~~~Is~~el~~~l~~~~~~~vlIDVR---------~~~E~~~ghIpGAiniP~~~l~~~~--------~~~~l~----~ 338 (390)
T PRK07411 280 EIPEMTVTELKALLDSGADDFVLIDVR---------NPNEYEIARIPGSVLVPLPDIENGP--------GVEKVK----E 338 (390)
T ss_pred ccCccCHHHHHHHHhCCCCCeEEEECC---------CHHHhccCcCCCCEEccHHHhhccc--------chHHHh----h
Confidence 34579999999988754 58999996 4589999999999999998764310 112222 2
Q ss_pred cCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCC
Q 017338 152 LGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYD 202 (373)
Q Consensus 152 ~gi~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~p 202 (373)
+.++++||+||..|.+ |.++++.|+.+||++ +.|+||+.+|.++..|
T Consensus 339 --l~~d~~IVvyC~~G~R-S~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p 385 (390)
T PRK07411 339 --LLNGHRLIAHCKMGGR-SAKALGILKEAGIEG-TNVKGGITAWSREVDP 385 (390)
T ss_pred --cCCCCeEEEECCCCHH-HHHHHHHHHHcCCCe-EEecchHHHHHHhcCC
Confidence 3468899999997764 899999999999975 5799999999876544
No 99
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.42 E-value=2e-13 Score=133.43 Aligned_cols=94 Identities=17% Similarity=0.258 Sum_probs=76.7
Q ss_pred ccCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCC---CCcccCcccccccCCCCCCHHHHHHHHHHcCCC
Q 017338 245 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVP---GSKCIPFPQMLDASQTLLPADELKKRFEQEGIS 321 (373)
Q Consensus 245 ~is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIp---GA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~ 321 (373)
.++++++.+.+.+++.+|||||++.|| ..|||| ||+|||+.++.+.. +..+.+. .++
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~E~-----------~~ghI~~~~gAinIPl~~l~~~~-------~~~~~l~--~~~ 331 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPHEV-----------LLKDLPEGGASLKLPLSAITDDA-------DILHALS--PID 331 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHHHh-----------hhccCCCCCccEeCcHHHhhcch-------hhhhhcc--ccC
Confidence 689999999988777899999999999 789998 69999998875321 0111111 244
Q ss_pred CCCcEEEEcCCchHHHHHHHHHHHcCCCC-ceeecccHH
Q 017338 322 LEKPVVTACGTGVTACILALGLNRLGKHD-VAVYDGSWT 359 (373)
Q Consensus 322 ~~~~IvvyC~~G~ra~~a~~~L~~~G~~~-v~~~~GG~~ 359 (373)
++ +|||||.+|.||..++..|+.+||++ |+++.||+.
T Consensus 332 ~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 332 GD-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred CC-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 44 99999999999999999999999986 999999974
No 100
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.28 E-value=6.8e-12 Score=122.74 Aligned_cols=94 Identities=22% Similarity=0.314 Sum_probs=73.6
Q ss_pred cccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCc---CceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 017338 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIP---GALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (373)
Q Consensus 77 ~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIp---GAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~g 153 (373)
.++++++.+++.+++.+||||| + .+||+.|||| ||+|+|+..+.+.. . .++.+.
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR--------~-~~E~~~ghI~~~~gAinIPl~~l~~~~-----------~---~~~~l~ 328 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVR--------E-PHEVLLKDLPEGGASLKLPLSAITDDA-----------D---ILHALS 328 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECC--------C-HHHhhhccCCCCCccEeCcHHHhhcch-----------h---hhhhcc
Confidence 5899999999988778999996 4 5899999998 69999998874310 0 112222
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHHHHcCCCc-eEEecCCHH
Q 017338 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDR-VWVLDGGLP 194 (373)
Q Consensus 154 i~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~-v~~L~GG~~ 194 (373)
..++++||+||..|.+ |..++..|+..||++ |++|.||+.
T Consensus 329 ~~~~~~Ivv~C~sG~R-S~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 329 PIDGDNVVVYCASGIR-SADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred ccCCCcEEEECCCChh-HHHHHHHHHHcCCCCceEEeccccC
Confidence 2233489999998876 888999999999986 999999985
No 101
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.17 E-value=5.7e-11 Score=109.62 Aligned_cols=102 Identities=13% Similarity=0.184 Sum_probs=87.3
Q ss_pred ccccCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCCC
Q 017338 243 HLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 322 (373)
Q Consensus 243 ~~~is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~ 322 (373)
...++++++.+++.+++.++||+|...|| .-||..||++.+...+.+- ++.+++.+. .-.
T Consensus 112 G~yl~p~~wn~~l~D~~~vviDtRN~YE~-----------~iG~F~gAv~p~~~tFref------P~~v~~~~~---~~~ 171 (308)
T COG1054 112 GTYLSPKDWNELLSDPDVVVIDTRNDYEV-----------AIGHFEGAVEPDIETFREF------PAWVEENLD---LLK 171 (308)
T ss_pred cCccCHHHHHHHhcCCCeEEEEcCcceeE-----------eeeeecCccCCChhhhhhh------HHHHHHHHH---hcc
Confidence 45789999999999999999999999999 8999999999998776532 234444444 346
Q ss_pred CCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHHhcC
Q 017338 323 EKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 364 (373)
Q Consensus 323 ~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W~~~ 364 (373)
+++|++||.+|.|+-.+...|...||++|+.|+||+-.+..+
T Consensus 172 ~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e~ 213 (308)
T COG1054 172 DKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLED 213 (308)
T ss_pred CCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhhh
Confidence 779999999999999999999999999999999999999776
No 102
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.11 E-value=4.4e-11 Score=121.22 Aligned_cols=73 Identities=25% Similarity=0.349 Sum_probs=63.5
Q ss_pred CCcEEEEecCCCccCCCCCCCCCCCCcccCCC----CcccCcccccccCCCCCCHHHHHHHHHHcCCCCCCcEEEEcCCc
Q 017338 258 GTYQLVDARSKARFDGDAPEPRKGIRSGHVPG----SKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTG 333 (373)
Q Consensus 258 ~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpG----A~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~~~~~IvvyC~~G 333 (373)
++.++||+|+++|| ..||||| |+|+|+.++.. .+. .++++++||+||++|
T Consensus 406 ~~~~lIDVR~~~E~-----------~~~hI~g~~~~a~niP~~~l~~-------------~~~--~l~~~~~iivyC~~G 459 (482)
T PRK01269 406 PDDVIIDIRSPDEQ-----------EDKPLKLEGVEVKSLPFYKLST-------------QFG--DLDQSKTYLLYCDRG 459 (482)
T ss_pred CCCEEEECCCHHHH-----------hcCCCCCCCceEEECCHHHHHH-------------HHh--hcCCCCeEEEECCCC
Confidence 46789999999999 7899999 99999977642 222 367889999999999
Q ss_pred hHHHHHHHHHHHcCCCCceeecc
Q 017338 334 VTACILALGLNRLGKHDVAVYDG 356 (373)
Q Consensus 334 ~ra~~a~~~L~~~G~~~v~~~~G 356 (373)
.||..++..|+.+||+||++|.+
T Consensus 460 ~rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 460 VMSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred HHHHHHHHHHHHcCCccEEecCC
Confidence 99999999999999999999864
No 103
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.07 E-value=2.6e-10 Score=105.28 Aligned_cols=117 Identities=20% Similarity=0.298 Sum_probs=88.8
Q ss_pred hcccccCCCCCCCCCCCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCC
Q 017338 59 AAGRRADYSTLSVSPKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHM 138 (373)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~ 138 (373)
.++........+....+..|+|++..+++.++++++||+| |. -||+.||..||++.+...+.+.
T Consensus 96 IV~lg~~ddv~p~~~vG~yl~p~~wn~~l~D~~~vviDtR--------N~-YE~~iG~F~gAv~p~~~tFref------- 159 (308)
T COG1054 96 IVALGVEDDVDPLENVGTYLSPKDWNELLSDPDVVVIDTR--------ND-YEVAIGHFEGAVEPDIETFREF------- 159 (308)
T ss_pred heecCCCCCcCccccccCccCHHHHHHHhcCCCeEEEEcC--------cc-eeEeeeeecCccCCChhhhhhh-------
Confidence 4444444444444555889999999999999999999996 44 7899999999999999888652
Q ss_pred CCCHHHHHHHHHHcCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHh
Q 017338 139 LPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (373)
Q Consensus 139 l~~~e~~~~~l~~~gi~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~ 198 (373)
++.+++.+. .-++++||.||..|.+..-..+| |...||++|+.|+||+-.+-+
T Consensus 160 ---P~~v~~~~~---~~~~KkVvmyCTGGIRCEKas~~-m~~~GF~eVyhL~GGIl~Y~e 212 (308)
T COG1054 160 ---PAWVEENLD---LLKDKKVVMYCTGGIRCEKASAW-MKENGFKEVYHLEGGILKYLE 212 (308)
T ss_pred ---HHHHHHHHH---hccCCcEEEEcCCceeehhhHHH-HHHhcchhhhcccchHHHHhh
Confidence 122232322 23677999999999987666666 556699999999999987743
No 104
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=1.7e-09 Score=101.42 Aligned_cols=101 Identities=18% Similarity=0.241 Sum_probs=73.4
Q ss_pred CCCcccHHHHHHhcCCC------CeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHH
Q 017338 74 KEPVVSVDWLHANLREP------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAA 147 (373)
Q Consensus 74 ~~~~is~~~l~~~l~~~------~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~ 147 (373)
.-..||++.|+.++... ..+||||| -| -||..|||+||+|+...+... .
T Consensus 154 ~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR--------~p-yEY~GGHIkgavnl~~~~~~~----------------~ 208 (325)
T KOG3772|consen 154 DLKYISPETLKGLLQGKFSDFFDKFIIIDCR--------YP-YEYEGGHIKGAVNLYSKELLQ----------------D 208 (325)
T ss_pred cccccCHHHHHHHHHhccccceeeEEEEEeC--------Cc-ccccCcccccceecccHhhhh----------------h
Confidence 34689999999998752 36799997 35 799999999999998775322 1
Q ss_pred HHHHc-CC---CCCCeEEEEcCCCCchHHHHHHHHHH------------cCCCceEEecCCHHHHHhC
Q 017338 148 AVSAL-GL---ENKDGLVVYDGKGIFSAARVWWMFRV------------FGHDRVWVLDGGLPRWRAS 199 (373)
Q Consensus 148 ~l~~~-gi---~~~~~VVvy~~~g~~~a~ra~~~L~~------------~G~~~v~~L~GG~~~W~~~ 199 (373)
.+... +. .+...+||||.....+..+++..|+. +-|..+++|+||+..|-..
T Consensus 209 ~f~~~~~~~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 209 FFLLKDGVPSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred hhccccccccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 11111 11 13457889999766668888888883 4456899999999999653
No 105
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.90 E-value=2e-09 Score=100.99 Aligned_cols=105 Identities=17% Similarity=0.255 Sum_probs=84.2
Q ss_pred CCccccCHHHHHHHhhC-CCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcC
Q 017338 241 QPHLIWTLEQVKRNIEE-GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEG 319 (373)
Q Consensus 241 ~~~~~is~~el~~~~~~-~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~g 319 (373)
.++..|+..++++.+++ ...++||+|++-|| +.-|+|+|+|||+.++.+..+ ++ +...-
T Consensus 314 ~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~-----------eI~~lP~avNIPL~~l~~~~~-----~~----~~~~~ 373 (427)
T KOG2017|consen 314 EPDERVSVTDYKRILDSGAKHLLLDVRPSHEY-----------EICRLPEAVNIPLKELRSRSG-----KK----LQGDL 373 (427)
T ss_pred ChhhcccHHHHHHHHhcCCCeEEEeccCcceE-----------EEEecccccccchhhhhhhhh-----hh----hcccc
Confidence 45668999999999886 57899999999999 899999999999999876543 11 11111
Q ss_pred CCCCCcEEEEcCCchHHHHHHHHHHHc-CCCCceeecccHHHHhcCC
Q 017338 320 ISLEKPVVTACGTGVTACILALGLNRL-GKHDVAVYDGSWTEWGAQP 365 (373)
Q Consensus 320 i~~~~~IvvyC~~G~ra~~a~~~L~~~-G~~~v~~~~GG~~~W~~~~ 365 (373)
-+..++|+|.|+.|+.|..+.+.|+.. ...+|+..-||+.+|....
T Consensus 374 ~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~v 420 (427)
T KOG2017|consen 374 NTESKDIFVICRRGNDSQRAVRILREKFPDSSVRDVIGGLKAWAAKV 420 (427)
T ss_pred cccCCCEEEEeCCCCchHHHHHHHHhhCCchhhhhhhhHHHHHHHhc
Confidence 234577999999999999999999874 4457888899999998763
No 106
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.83 E-value=6.2e-09 Score=97.72 Aligned_cols=98 Identities=18% Similarity=0.327 Sum_probs=70.6
Q ss_pred cccCHHHHHHHhhC------CCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHH
Q 017338 244 LIWTLEQVKRNIEE------GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQ 317 (373)
Q Consensus 244 ~~is~~el~~~~~~------~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~ 317 (373)
..||++.|+.++.. ..++|||+|-+-|| ..|||+||+||+..+..... +..
T Consensus 156 k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY-----------~GGHIkgavnl~~~~~~~~~------------f~~ 212 (325)
T KOG3772|consen 156 KYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEY-----------EGGHIKGAVNLYSKELLQDF------------FLL 212 (325)
T ss_pred cccCHHHHHHHHHhccccceeeEEEEEeCCcccc-----------cCcccccceecccHhhhhhh------------hcc
Confidence 46899999988863 13779999999999 78999999999987654321 110
Q ss_pred -cCC---CCCCcEEEEcC-CchHHHHHHHHHHH------------cCCCCceeecccHHHHhcC
Q 017338 318 -EGI---SLEKPVVTACG-TGVTACILALGLNR------------LGKHDVAVYDGSWTEWGAQ 364 (373)
Q Consensus 318 -~gi---~~~~~IvvyC~-~G~ra~~a~~~L~~------------~G~~~v~~~~GG~~~W~~~ 364 (373)
.+. ....-+||||. +-.|...+|..|+. +-|..+++|+||+.+|-..
T Consensus 213 ~~~~~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 213 KDGVPSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred ccccccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 011 12356899994 45566666666662 5677899999999999765
No 107
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.79 E-value=1e-08 Score=104.13 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=59.3
Q ss_pred CCeEEEEeecCCCCCCCCChhhhhhCCCcC----ceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEEcC
Q 017338 90 PDLKVLDASWYMPDEQRNPFQEYQVAHIPG----ALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDG 165 (373)
Q Consensus 90 ~~~~iiDvR~~~~~~~r~~~~ey~~gHIpG----Ai~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi~~~~~VVvy~~ 165 (373)
++.+|||+| +.++|..+|||| |+|+|+..+.. .+.. ++++++||+||.
T Consensus 406 ~~~~lIDVR---------~~~E~~~~hI~g~~~~a~niP~~~l~~-----------------~~~~--l~~~~~iivyC~ 457 (482)
T PRK01269 406 PDDVIIDIR---------SPDEQEDKPLKLEGVEVKSLPFYKLST-----------------QFGD--LDQSKTYLLYCD 457 (482)
T ss_pred CCCEEEECC---------CHHHHhcCCCCCCCceEEECCHHHHHH-----------------HHhh--cCCCCeEEEECC
Confidence 368899996 458999999999 99999887532 2333 357789999999
Q ss_pred CCCchHHHHHHHHHHcCCCceEEec
Q 017338 166 KGIFSAARVWWMFRVFGHDRVWVLD 190 (373)
Q Consensus 166 ~g~~~a~ra~~~L~~~G~~~v~~L~ 190 (373)
.|.+ |..++..|+.+||+||+++.
T Consensus 458 ~G~r-S~~aa~~L~~~G~~nv~~y~ 481 (482)
T PRK01269 458 RGVM-SRLQALYLREQGFSNVKVYR 481 (482)
T ss_pred CCHH-HHHHHHHHHHcCCccEEecC
Confidence 8875 89999999999999999875
No 108
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.44 E-value=2.1e-07 Score=87.54 Aligned_cols=102 Identities=23% Similarity=0.272 Sum_probs=77.8
Q ss_pred CCcccHHHHHHhcCC-CCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 017338 75 EPVVSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (373)
Q Consensus 75 ~~~is~~~l~~~l~~-~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~g 153 (373)
.--||+.+.++.+++ ...++|||| |.-+|+..|+|+|+|||+.++..... + .++..-
T Consensus 316 ~~Rvsv~d~k~il~~~~~h~llDvR---------p~~~~eI~~lP~avNIPL~~l~~~~~------------~-~~~~~~ 373 (427)
T KOG2017|consen 316 DERVSVTDYKRILDSGAKHLLLDVR---------PSHEYEICRLPEAVNIPLKELRSRSG------------K-KLQGDL 373 (427)
T ss_pred hhcccHHHHHHHHhcCCCeEEEecc---------CcceEEEEecccccccchhhhhhhhh------------h-hhcccc
Confidence 456999999999987 568999997 66899999999999999998765321 1 111112
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHHHHcCCC-ceEEecCCHHHHHhC
Q 017338 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHD-RVWVLDGGLPRWRAS 199 (373)
Q Consensus 154 i~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~-~v~~L~GG~~~W~~~ 199 (373)
-+...+|+|.|..|.. +.++.|.|+...++ +|+-+-||+.+|...
T Consensus 374 ~~~~~~I~ViCrrGNd-SQ~Av~~Lre~~~~~~vrDvigGl~~w~~~ 419 (427)
T KOG2017|consen 374 NTESKDIFVICRRGND-SQRAVRILREKFPDSSVRDVIGGLKAWAAK 419 (427)
T ss_pred cccCCCEEEEeCCCCc-hHHHHHHHHhhCCchhhhhhhhHHHHHHHh
Confidence 2345669999998886 89999999976654 566677999999764
No 109
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.22 E-value=2.9e-06 Score=78.91 Aligned_cols=99 Identities=19% Similarity=0.217 Sum_probs=75.7
Q ss_pred CCcccHHHHHHhcCCC------CeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHH
Q 017338 75 EPVVSVDWLHANLREP------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAA 148 (373)
Q Consensus 75 ~~~is~~~l~~~l~~~------~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~ 148 (373)
-+.||++.|+..++.. +.+||||| -+ -||..|||-.||||.-.. ++.-.
T Consensus 241 ~~RIs~etlk~vl~g~~~~~f~kCiIIDCR--------Fe-YEY~GGHIinaVNi~s~~----------------~l~~~ 295 (427)
T COG5105 241 IQRISVETLKQVLEGMYNIDFLKCIIIDCR--------FE-YEYRGGHIINAVNISSTK----------------KLGLL 295 (427)
T ss_pred hhhcCHHHHHHHHhchhhhhhhceeEEeec--------ce-eeecCceeeeeeecchHH----------------HHHHH
Confidence 4679999999988752 46799997 23 689999999999997654 33334
Q ss_pred HHHcCCCCCCeEEEEcCCCCchHHHHHHHHHHcC------------CCceEEecCCHHHHHh
Q 017338 149 VSALGLENKDGLVVYDGKGIFSAARVWWMFRVFG------------HDRVWVLDGGLPRWRA 198 (373)
Q Consensus 149 l~~~gi~~~~~VVvy~~~g~~~a~ra~~~L~~~G------------~~~v~~L~GG~~~W~~ 198 (373)
+.........-+|+.|+....++.+++..|+-.- |..|++|+||+.+.-.
T Consensus 296 F~hkplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 296 FRHKPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred HHhccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 4444455567788999988778999999987543 3579999999988743
No 110
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=97.73 E-value=8.2e-05 Score=69.44 Aligned_cols=97 Identities=19% Similarity=0.323 Sum_probs=72.5
Q ss_pred cccCHHHHHHHhhCC------CcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHH
Q 017338 244 LIWTLEQVKRNIEEG------TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQ 317 (373)
Q Consensus 244 ~~is~~el~~~~~~~------~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~ 317 (373)
..|+.+.+++.++.. +-+|||.|=+.|| ..|||-.|+||.-.+ +|.-.|..
T Consensus 242 ~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY-----------~GGHIinaVNi~s~~------------~l~~~F~h 298 (427)
T COG5105 242 QRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEY-----------RGGHIINAVNISSTK------------KLGLLFRH 298 (427)
T ss_pred hhcCHHHHHHHHhchhhhhhhceeEEeecceeee-----------cCceeeeeeecchHH------------HHHHHHHh
Confidence 468888888887632 3569999999999 789999999997543 33444443
Q ss_pred cCCCCCCcEEEEcC-CchHHHHHHHHHHHc------------CCCCceeecccHHHHhc
Q 017338 318 EGISLEKPVVTACG-TGVTACILALGLNRL------------GKHDVAVYDGSWTEWGA 363 (373)
Q Consensus 318 ~gi~~~~~IvvyC~-~G~ra~~a~~~L~~~------------G~~~v~~~~GG~~~W~~ 363 (373)
.-+..-.-+|++|. +..|+..+|..|+.+ -|..|++++||+...-.
T Consensus 299 kplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 299 KPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred ccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 33555567999995 678999999888642 45689999999987644
No 111
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=96.44 E-value=0.0019 Score=59.23 Aligned_cols=106 Identities=21% Similarity=0.296 Sum_probs=68.3
Q ss_pred cccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCccccccc-----CCCCCCCCCCHHHHHHHHHH
Q 017338 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADR-----TTNLPHMLPSEEAFAAAVSA 151 (373)
Q Consensus 77 ~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~-----~~~~~~~l~~~e~~~~~l~~ 151 (373)
-+|++||.+.+..++++++|+| + +..||.+|+++-+..+... .-.+...+|........-.+
T Consensus 5 ~~s~~wlnr~l~~~nllllDCR---------s----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~ 71 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCR---------S----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPAR 71 (343)
T ss_pred HHHHHHHHhhcccCceEEEecC---------C----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCcccccccccc
Confidence 4789999999999899999997 3 4789999999987764332 22333445543322211001
Q ss_pred cCCCCCCeEEEEcCCCC-----chHHHHH----HHHHHcCCCceEEecCCHHHHHhC
Q 017338 152 LGLENKDGLVVYDGKGI-----FSAARVW----WMFRVFGHDRVWVLDGGLPRWRAS 199 (373)
Q Consensus 152 ~gi~~~~~VVvy~~~g~-----~~a~ra~----~~L~~~G~~~v~~L~GG~~~W~~~ 199 (373)
-+..+||.||.... ..++++. ..++..|. .++.|.|||..++++
T Consensus 72 ---c~~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~e 124 (343)
T KOG1717|consen 72 ---CGTVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQAE 124 (343)
T ss_pred ---CCcceeeecccccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhhh
Confidence 13367899987411 1123322 34566776 689999999998765
No 112
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=96.29 E-value=0.023 Score=45.90 Aligned_cols=85 Identities=20% Similarity=0.311 Sum_probs=39.5
Q ss_pred cCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCC----CCCcccCCCCcccCcccccccCCCCCCH---HHHHHHHHHc
Q 017338 246 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRK----GIRSGHVPGSKCIPFPQMLDASQTLLPA---DELKKRFEQE 318 (373)
Q Consensus 246 is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~----~~~~GhIpGA~~ip~~~l~~~~~~~~~~---~~l~~~~~~~ 318 (373)
++.+++.+..+.+=-.||+.|+..|=.+. +.... ....| + .-+|+|+.. +. .+. +.+.+.+.+
T Consensus 15 ~~~~d~~~la~~GfktVInlRpd~E~~~q-p~~~~~~~~a~~~G-l-~y~~iPv~~-----~~-~~~~~v~~f~~~l~~- 84 (110)
T PF04273_consen 15 PSPEDLAQLAAQGFKTVINLRPDGEEPGQ-PSSAEEAAAAEALG-L-QYVHIPVDG-----GA-ITEEDVEAFADALES- 84 (110)
T ss_dssp --HHHHHHHHHCT--EEEE-S-TTSTTT--T-HHCHHHHHHHCT---EEEE----T-----TT---HHHHHHHHHHHHT-
T ss_pred CCHHHHHHHHHCCCcEEEECCCCCCCCCC-CCHHHHHHHHHHcC-C-eEEEeecCC-----CC-CCHHHHHHHHHHHHh-
Confidence 57888888777655679999987663211 00000 00000 0 123444432 11 222 445555553
Q ss_pred CCCCCCcEEEEcCCchHHHHHHHHH
Q 017338 319 GISLEKPVVTACGTGVTACILALGL 343 (373)
Q Consensus 319 gi~~~~~IvvyC~~G~ra~~a~~~L 343 (373)
..+||.+||.+|.||..+|.+-
T Consensus 85 ---~~~Pvl~hC~sG~Ra~~l~~l~ 106 (110)
T PF04273_consen 85 ---LPKPVLAHCRSGTRASALWALA 106 (110)
T ss_dssp ---TTTSEEEE-SCSHHHHHHHHHH
T ss_pred ---CCCCEEEECCCChhHHHHHHHH
Confidence 2479999999999998766543
No 113
>COG2603 Predicted ATPase [General function prediction only]
Probab=96.28 E-value=0.0089 Score=55.67 Aligned_cols=134 Identities=15% Similarity=0.175 Sum_probs=80.0
Q ss_pred CeEEEEeecCCCCCCCCChhhhhhCCCcCceecCccccccc----CCCCCCCCCCHHH--------------HHHHHHHc
Q 017338 91 DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADR----TTNLPHMLPSEEA--------------FAAAVSAL 152 (373)
Q Consensus 91 ~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~----~~~~~~~l~~~e~--------------~~~~l~~~ 152 (373)
+.-+|||| .| -+|..||.|+++|+|.-.=... +....++.+.... ++.+...
T Consensus 15 ~~~lid~r--------ap-~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f- 84 (334)
T COG2603 15 DTPLIDVR--------AP-IEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAF- 84 (334)
T ss_pred CCceeecc--------ch-HHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHH-
Confidence 68899996 45 8999999999999997431110 0011111111111 1111111
Q ss_pred CCCCCCeEEEEcCCCCchHHHHHHHH-HHcCCCceEEecCCHHHHHhCCCCcccCCCcchhHhhhhhHHHHHHhhcCccc
Q 017338 153 GLENKDGLVVYDGKGIFSAARVWWMF-RVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVV 231 (373)
Q Consensus 153 gi~~~~~VVvy~~~g~~~a~ra~~~L-~~~G~~~v~~L~GG~~~W~~~g~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (373)
..+.++-++|..|+.++......| +..|++ +--+-||+.+.+.
T Consensus 85 --~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalrt--------------------------------- 128 (334)
T COG2603 85 --QEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALRT--------------------------------- 128 (334)
T ss_pred --HHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHHH---------------------------------
Confidence 123456666877766666666666 777774 4455677766431
Q ss_pred CCcceeeccCCccccCHHHHHHHhhCCCcEEEE-ecCCCccCCCCCCCCCCCCcccCCCCcccCc
Q 017338 232 GPTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVD-ARSKARFDGDAPEPRKGIRSGHVPGSKCIPF 295 (373)
Q Consensus 232 ~~~~~~~~~~~~~~is~~el~~~~~~~~~~iID-vR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~ 295 (373)
....+..+.+..+.+++++ ++....+ .....|+|+|++-
T Consensus 129 --------------~~~~a~~~~i~~k~~il~g~Tgcgkt~-----------lve~lp~aidlE~ 168 (334)
T COG2603 129 --------------FAIQATIKEIAQKDFILCGCTGCGKTE-----------LVEQLPNAIDLEG 168 (334)
T ss_pred --------------HHHHHHHHHhccCCEEEeCCCCCcHHH-----------HHHhCCCccCcHh
Confidence 1234455566667888999 7777666 5778899999884
No 114
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=95.95 E-value=0.048 Score=45.71 Aligned_cols=94 Identities=13% Similarity=0.165 Sum_probs=49.2
Q ss_pred cCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCC--cccCcccccccCCCC--CCHHHHHHHHHHcCCC
Q 017338 246 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGS--KCIPFPQMLDASQTL--LPADELKKRFEQEGIS 321 (373)
Q Consensus 246 is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA--~~ip~~~l~~~~~~~--~~~~~l~~~~~~~gi~ 321 (373)
++.+++..+.+.+=-.|||.|+..|-.+...... ......-+|- +++|+.. +.+ ...+.+.+.+. .
T Consensus 15 lt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~-~~~~a~~~gl~y~~iPv~~-----~~~~~~~v~~f~~~~~----~ 84 (135)
T TIGR01244 15 LTKADAAQAAQLGFKTVINNRPDREEESQPDFAQ-IKAAAEAAGVTYHHQPVTA-----GDITPDDVETFRAAIG----A 84 (135)
T ss_pred CCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHH-HHHHHHHCCCeEEEeecCC-----CCCCHHHHHHHHHHHH----h
Confidence 4567776654444467999999877533210000 0000000121 2344321 111 12344555554 2
Q ss_pred CCCcEEEEcCCchHHHHHHHHH-HHcCCC
Q 017338 322 LEKPVVTACGTGVTACILALGL-NRLGKH 349 (373)
Q Consensus 322 ~~~~IvvyC~~G~ra~~a~~~L-~~~G~~ 349 (373)
.++||++||.+|.|+..+|.++ ...|..
T Consensus 85 ~~~pvL~HC~sG~Rt~~l~al~~~~~g~~ 113 (135)
T TIGR01244 85 AEGPVLAYCRSGTRSSLLWGFRQAAEGVP 113 (135)
T ss_pred CCCCEEEEcCCChHHHHHHHHHHHHcCCC
Confidence 3589999999999988776543 335654
No 115
>COG2603 Predicted ATPase [General function prediction only]
Probab=93.55 E-value=0.095 Score=49.02 Aligned_cols=92 Identities=22% Similarity=0.297 Sum_probs=56.3
Q ss_pred CCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccc------cCCC-CCCH----------HHHH-HHHHH-c
Q 017338 258 GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLD------ASQT-LLPA----------DELK-KRFEQ-E 318 (373)
Q Consensus 258 ~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~------~~~~-~~~~----------~~l~-~~~~~-~ 318 (373)
.+..+||||.+.|| ..||.|+++|+|...-.. ..+. ..+. .++. .++.. .
T Consensus 14 ~~~~lid~rap~ef-----------~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask 82 (334)
T COG2603 14 ADTPLIDVRAPIEF-----------ENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASK 82 (334)
T ss_pred cCCceeeccchHHH-----------hcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 36789999999999 899999999999643211 0000 0000 1111 11110 0
Q ss_pred CCCCCCcEEEEcC-CchHHHHHHHHH-HHcCCCCceeecccHHHH
Q 017338 319 GISLEKPVVTACG-TGVTACILALGL-NRLGKHDVAVYDGSWTEW 361 (373)
Q Consensus 319 gi~~~~~IvvyC~-~G~ra~~a~~~L-~~~G~~~v~~~~GG~~~W 361 (373)
....+.++-++|. +|.|+-..+..| ...|.+ +--..||+.+.
T Consensus 83 ~f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKal 126 (334)
T COG2603 83 AFQEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKAL 126 (334)
T ss_pred HHHHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHH
Confidence 1223567777794 567898888888 567875 44456887654
No 116
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=91.20 E-value=0.78 Score=45.42 Aligned_cols=100 Identities=27% Similarity=0.333 Sum_probs=63.5
Q ss_pred ccHHHHHHhcC--CC--CeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHc-
Q 017338 78 VSVDWLHANLR--EP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL- 152 (373)
Q Consensus 78 is~~~l~~~l~--~~--~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~- 152 (373)
|++-+|.++-+ .+ +..|||+| |.+.|.+||+-.|.|++-.- |+-.+++|+..+..+
T Consensus 309 isv~el~~~~~~~~~~VrFFiVDcR---------paeqynaGHlstaFhlDc~l----------mlqeP~~Fa~av~sLl 369 (669)
T KOG3636|consen 309 ISVIELTSHDEISSGSVRFFIVDCR---------PAEQYNAGHLSTAFHLDCVL----------MLQEPEKFAIAVNSLL 369 (669)
T ss_pred hhHHHhhcccccccCceEEEEEecc---------chhhcccccchhhhcccHHH----------HhcCHHHHHHHHHHHH
Confidence 66666654332 22 36799997 78999999999999998764 344677888765543
Q ss_pred -----CCCCC-----CeEEEEcCCCCc----hHHHHHHHHHHcCCCceEEecCCHHHHH
Q 017338 153 -----GLENK-----DGLVVYDGKGIF----SAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (373)
Q Consensus 153 -----gi~~~-----~~VVvy~~~g~~----~a~ra~~~L~~~G~~~v~~L~GG~~~W~ 197 (373)
.|..+ ..+.+. +.|.. ..-++..++-.-+-.-|.++.||+.+..
T Consensus 370 ~aqrqtie~~s~aggeHlcfm-GsGr~EED~YmnMviA~FlQKnk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 370 CAQRQTIERDSNAGGEHLCFM-GSGRDEEDNYMNMVIAMFLQKNKLYVSFVQGGYKKLH 427 (669)
T ss_pred HHHHHhhhccccCCcceEEEe-ccCcchHHHHHHHHHHHHHhcCceEEEEecchHHHHH
Confidence 23322 344443 22211 1334444555556557899999998875
No 117
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.98 E-value=1.1 Score=36.42 Aligned_cols=86 Identities=15% Similarity=0.195 Sum_probs=47.4
Q ss_pred cCHHHHHHHhhCCCcEEEEecCCCccCCCCCCC-------CCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHc
Q 017338 246 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEP-------RKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQE 318 (373)
Q Consensus 246 is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~-------~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~ 318 (373)
++++++.+....+=..||-.|+..|=.|.-..- ..+....||| ..-- .-+--+.+.+++.+.+
T Consensus 16 i~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iP------V~~~---~iT~~dV~~f~~Al~e- 85 (130)
T COG3453 16 ISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIP------VTGG---GITEADVEAFQRALDE- 85 (130)
T ss_pred CCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEee------cCCC---CCCHHHHHHHHHHHHH-
Confidence 567787766554445689999876643321000 0111223333 2110 0000123555566654
Q ss_pred CCCCCCcEEEEcCCchHHHHHHHHHH
Q 017338 319 GISLEKPVVTACGTGVTACILALGLN 344 (373)
Q Consensus 319 gi~~~~~IvvyC~~G~ra~~a~~~L~ 344 (373)
.+.||..||++|.||..+|..-+
T Consensus 86 ---aegPVlayCrsGtRs~~ly~~~~ 108 (130)
T COG3453 86 ---AEGPVLAYCRSGTRSLNLYGLGE 108 (130)
T ss_pred ---hCCCEEeeecCCchHHHHHHHHH
Confidence 35799999999999998776544
No 118
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=89.50 E-value=0.14 Score=44.37 Aligned_cols=56 Identities=13% Similarity=0.193 Sum_probs=40.5
Q ss_pred hhhhccCcccc-----ccCchhhhhhhhccccccCCCCcc-------cccccCCCcchhhh-hhhhcccccC
Q 017338 7 TRRLVHSSFSI-----SYKPQVFTSLLNKKLFYSRPKHTH-------TTLKTSSSQSPCVM-SSLAAGRRAD 65 (373)
Q Consensus 7 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~ 65 (373)
.+.+-+|..++ ||||+.+||+.+++.+|||+.-.- .|++++ -|++. .++++++..+
T Consensus 166 ~kIFTLP~d~~iYpaHdY~G~~~stV~EEk~~NPRLTk~~eeFv~IM~NLnL~---yPk~Id~aVpanm~~g 234 (237)
T KOG0814|consen 166 SKIFTLPEDYLIYPAHDYKGFLVSTVWEEKNLNPRLTKSKEEFVKIMKNLNLP---YPKQIDKAVPANMVCG 234 (237)
T ss_pred HHheeCCCceEEeeccccCceEeeehhhhhccCcccccCHHHHHHHHHhcCCC---ChhhhCcccchhhccc
Confidence 34566787776 999999999999999999996543 555555 55555 5555555543
No 119
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=89.42 E-value=0.071 Score=54.06 Aligned_cols=96 Identities=19% Similarity=0.144 Sum_probs=63.2
Q ss_pred CCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCC
Q 017338 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 154 (373)
Q Consensus 75 ~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi 154 (373)
-+-||++++..+ +.+.++|.| ...+|..+|+++++|+|+. +.+..- +.|. .+....-
T Consensus 621 ~prmsAedl~~~---~~l~v~d~r---------~~~ef~r~~~s~s~nip~~-~~ea~l---------~~~~-~l~~~~~ 677 (725)
T KOG1093|consen 621 CPRISAEDLIWL---KMLYVLDTR---------QESEFQREHFSDSINIPFN-NHEADL---------DWLR-FLPGIVC 677 (725)
T ss_pred CccccHHHHHHH---HHHHHHhHH---------HHHHHHHhhccccccCCcc-chHHHH---------HHhh-cchHhHH
Confidence 466888888766 468899996 4589999999999999998 222100 0010 1111112
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHH
Q 017338 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLP 194 (373)
Q Consensus 155 ~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~ 194 (373)
.....+|++.. +...+++....+..+-+.++.++++|++
T Consensus 678 ~~~~~~v~~~~-~~K~~~e~~~~~~~mk~p~~cil~~~~~ 716 (725)
T KOG1093|consen 678 SEGKKCVVVGK-NDKHAAERLTELYVMKVPRICILHDGFN 716 (725)
T ss_pred hhCCeEEEecc-chHHHHHHhhHHHHhcccHHHHHHHHHh
Confidence 24566777755 3334677667777777888889999987
No 120
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=87.67 E-value=3.3 Score=34.56 Aligned_cols=53 Identities=26% Similarity=0.389 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCCchHHHHHH-HHHHcCCCceEEecCCHHHHHhCCCCcc
Q 017338 143 EAFAAAVSALGLENKDGLVVYDGKGIFSAARVWW-MFRVFGHDRVWVLDGGLPRWRASGYDVE 204 (373)
Q Consensus 143 e~~~~~l~~~gi~~~~~VVvy~~~g~~~a~ra~~-~L~~~G~~~v~~L~GG~~~W~~~g~pv~ 204 (373)
+.|.+.+.. .+.+|++||..|.+ +..+|. .+...|.+.-.++. .=++.|+.++
T Consensus 76 ~~f~~~~~~----~~~pvL~HC~sG~R-t~~l~al~~~~~g~~~~~i~~----~~~~~G~~~~ 129 (135)
T TIGR01244 76 ETFRAAIGA----AEGPVLAYCRSGTR-SSLLWGFRQAAEGVPVEEIVR----RAQAAGYDLS 129 (135)
T ss_pred HHHHHHHHh----CCCCEEEEcCCChH-HHHHHHHHHHHcCCCHHHHHH----HHHHcCCCcc
Confidence 345555542 35889999999884 555443 33445664322332 2355666665
No 121
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=86.35 E-value=2.6 Score=33.96 Aligned_cols=85 Identities=22% Similarity=0.199 Sum_probs=36.8
Q ss_pred cccHHHHHHhcCCCCeEEEEeecCCCCCCCC--Chh----hhhhCCCcCceecCcccccccCCCCCCCCCCHHH---HHH
Q 017338 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRN--PFQ----EYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEA---FAA 147 (373)
Q Consensus 77 ~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~--~~~----ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~---~~~ 147 (373)
.++++++.++.+.+=-.||+.| |+.+.. |.. +-...+==.-+|+|+.. .-++.+. |.+
T Consensus 14 Q~~~~d~~~la~~GfktVInlR---pd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~----------~~~~~~~v~~f~~ 80 (110)
T PF04273_consen 14 QPSPEDLAQLAAQGFKTVINLR---PDGEEPGQPSSAEEAAAAEALGLQYVHIPVDG----------GAITEEDVEAFAD 80 (110)
T ss_dssp S--HHHHHHHHHCT--EEEE-S----TTSTTT-T-HHCHHHHHHHCT-EEEE----T----------TT--HHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCcEEEECC---CCCCCCCCCCHHHHHHHHHHcCCeEEEeecCC----------CCCCHHHHHHHHH
Confidence 4899999987766335799998 211100 000 00001101235666653 1134444 444
Q ss_pred HHHHcCCCCCCeEEEEcCCCCchHHHHHHHHHH
Q 017338 148 AVSALGLENKDGLVVYDGKGIFSAARVWWMFRV 180 (373)
Q Consensus 148 ~l~~~gi~~~~~VVvy~~~g~~~a~ra~~~L~~ 180 (373)
.|..+ ..+|++||..|.+ +..+ |.|..
T Consensus 81 ~l~~~----~~Pvl~hC~sG~R-a~~l-~~l~~ 107 (110)
T PF04273_consen 81 ALESL----PKPVLAHCRSGTR-ASAL-WALAQ 107 (110)
T ss_dssp HHHTT----TTSEEEE-SCSHH-HHHH-HHHHH
T ss_pred HHHhC----CCCEEEECCCChh-HHHH-HHHHh
Confidence 55443 4689999998875 5544 44543
No 122
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=84.53 E-value=0.21 Score=50.88 Aligned_cols=94 Identities=19% Similarity=0.171 Sum_probs=58.2
Q ss_pred ccCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCC--CC
Q 017338 245 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGI--SL 322 (373)
Q Consensus 245 ~is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi--~~ 322 (373)
.++.+++... +...++|.|...|| +.+|+++++|+|+. +.+. +++...--.++ ..
T Consensus 623 rmsAedl~~~---~~l~v~d~r~~~ef-----------~r~~~s~s~nip~~-~~ea--------~l~~~~~l~~~~~~~ 679 (725)
T KOG1093|consen 623 RISAEDLIWL---KMLYVLDTRQESEF-----------QREHFSDSINIPFN-NHEA--------DLDWLRFLPGIVCSE 679 (725)
T ss_pred cccHHHHHHH---HHHHHHhHHHHHHH-----------HHhhccccccCCcc-chHH--------HHHHhhcchHhHHhh
Confidence 4666666655 35789999999999 89999999999998 2221 11111100011 12
Q ss_pred CCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHHH
Q 017338 323 EKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW 361 (373)
Q Consensus 323 ~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W 361 (373)
.+.++++....--++.....+..+-+..+.++++|+...
T Consensus 680 ~~~~v~~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~~~ 718 (725)
T KOG1093|consen 680 GKKCVVVGKNDKHAAERLTELYVMKVPRICILHDGFNNI 718 (725)
T ss_pred CCeEEEeccchHHHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence 345555554433455444455555577888999998843
No 123
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=83.42 E-value=3.2 Score=34.26 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=21.4
Q ss_pred CCCCCcEEEEcCCch-HHHH--HHHHHHHcCCC
Q 017338 320 ISLEKPVVTACGTGV-TACI--LALGLNRLGKH 349 (373)
Q Consensus 320 i~~~~~IvvyC~~G~-ra~~--a~~~L~~~G~~ 349 (373)
+..+++|+|+|..|. ||.. +++.+...|++
T Consensus 75 ~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 75 EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLS 107 (138)
T ss_pred hcCCCeEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 567789999999986 6653 44456667764
No 124
>PLN02727 NAD kinase
Probab=80.36 E-value=6.7 Score=42.80 Aligned_cols=84 Identities=26% Similarity=0.223 Sum_probs=43.8
Q ss_pred ccCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCC---CCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHcCCC
Q 017338 245 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPR---KGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGIS 321 (373)
Q Consensus 245 ~is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~---~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~gi~ 321 (373)
-++++++....+.+=-.||+.|+..|-.+ +... ...+..-| .-+|+|... ...++.+++++..+...-.
T Consensus 268 Qpspe~la~LA~~GfKTIINLRpd~E~~q--~~~~ee~eAae~~GL-~yVhIPVs~-----~~apt~EqVe~fa~~l~~s 339 (986)
T PLN02727 268 QVTEEGLKWLLEKGFKTIVDLRAEIVKDN--FYQAAVDDAISSGKI-EVVKIPVEV-----RTAPSAEQVEKFASLVSDS 339 (986)
T ss_pred CCCHHHHHHHHHCCCeEEEECCCCCcCCC--chhHHHHHHHHHcCC-eEEEeecCC-----CCCCCHHHHHHHHHHHHhh
Confidence 35788887776654456999999776211 1100 00000111 123444421 1223445555544432113
Q ss_pred CCCcEEEEcCCchHH
Q 017338 322 LEKPVVTACGTGVTA 336 (373)
Q Consensus 322 ~~~~IvvyC~~G~ra 336 (373)
..+||++||.+|.+.
T Consensus 340 lpkPVLvHCKSGarR 354 (986)
T PLN02727 340 SKKPIYLHSKEGVWR 354 (986)
T ss_pred cCCCEEEECCCCCch
Confidence 478999999999943
No 125
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=79.98 E-value=1 Score=41.69 Aligned_cols=100 Identities=23% Similarity=0.357 Sum_probs=60.2
Q ss_pred cCHHHHHHHhhCCCcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccC---CCC-----CCHHHHHHHHHH
Q 017338 246 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS---QTL-----LPADELKKRFEQ 317 (373)
Q Consensus 246 is~~el~~~~~~~~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~---~~~-----~~~~~l~~~~~~ 317 (373)
++.+|+...+..++.+++|.|+ +..||.+|+++-+..+..+. +.+ .+....++.+.
T Consensus 6 ~s~~wlnr~l~~~nllllDCRs---------------es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~- 69 (343)
T KOG1717|consen 6 KSVAWLNRQLELGNLLLLDCRS---------------ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFP- 69 (343)
T ss_pred HHHHHHHhhcccCceEEEecCC---------------ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCcccccccc-
Confidence 4678898888888899999998 35789999988765543210 110 00000000000
Q ss_pred cCCCCCCcEEEEcCC--------chHHHHHHHH---HHHcCCCCceeecccHHHHhcC
Q 017338 318 EGISLEKPVVTACGT--------GVTACILALG---LNRLGKHDVAVYDGSWTEWGAQ 364 (373)
Q Consensus 318 ~gi~~~~~IvvyC~~--------G~ra~~a~~~---L~~~G~~~v~~~~GG~~~W~~~ 364 (373)
.--+..++|.|..+ |. ++..-.. ++..|+. ++.+.||+....++
T Consensus 70 -~~c~~v~vilyD~~~~e~e~~~~~-~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e 124 (343)
T KOG1717|consen 70 -ARCGTVTVILYDESSAEWEEETGA-ESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAE 124 (343)
T ss_pred -ccCCcceeeecccccccccccchh-hhHHHHHHHHHHhcCcc-hhhhhcccchhhhh
Confidence 01123678999865 22 3333333 4557875 88999999887765
No 126
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=79.10 E-value=6.7 Score=32.15 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=19.0
Q ss_pred CCCCcEEEEcCCch-HHHH--HHHHHHHcCC
Q 017338 321 SLEKPVVTACGTGV-TACI--LALGLNRLGK 348 (373)
Q Consensus 321 ~~~~~IvvyC~~G~-ra~~--a~~~L~~~G~ 348 (373)
..+++|+|+|..|. ||.. +++.+...|+
T Consensus 79 ~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 79 EKGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred hcCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 34689999999987 6653 3444555555
No 127
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=76.34 E-value=8.9 Score=33.60 Aligned_cols=30 Identities=30% Similarity=0.306 Sum_probs=20.0
Q ss_pred CCCCCcEEEEcCCch-HHH--HHHHHHHHcCCC
Q 017338 320 ISLEKPVVTACGTGV-TAC--ILALGLNRLGKH 349 (373)
Q Consensus 320 i~~~~~IvvyC~~G~-ra~--~a~~~L~~~G~~ 349 (373)
+...+.|+|+|..|. ||+ .+++.|...|..
T Consensus 102 ~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~ 134 (180)
T COG2453 102 LSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS 134 (180)
T ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence 456679999998875 554 344566665554
No 128
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=66.57 E-value=5 Score=34.59 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=24.9
Q ss_pred cCCCCCCeEEEEc-CC---CCchHHHHHHHHHHcCCCceEEecCCHHHH
Q 017338 152 LGLENKDGLVVYD-GK---GIFSAARVWWMFRVFGHDRVWVLDGGLPRW 196 (373)
Q Consensus 152 ~gi~~~~~VVvy~-~~---g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W 196 (373)
+|++++..+++.+ +. .......++.+|+.+|..++..||||-..-
T Consensus 95 iG~~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~ 143 (170)
T PF09992_consen 95 IGVTADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSST 143 (170)
T ss_dssp EEE-TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--
T ss_pred EEEeCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceE
Confidence 4565666666553 31 234477788899999999999999997553
No 129
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=64.97 E-value=5.6 Score=34.50 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=16.1
Q ss_pred CCCCcEEEEcCCch-HHHH-HHHHHHHcC
Q 017338 321 SLEKPVVTACGTGV-TACI-LALGLNRLG 347 (373)
Q Consensus 321 ~~~~~IvvyC~~G~-ra~~-a~~~L~~~G 347 (373)
..+++|+++|.+|. |+.. ++..|-.+|
T Consensus 131 ~~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 131 ENGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp HTT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred HcCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 35789999998875 6664 556666666
No 130
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=62.36 E-value=19 Score=31.17 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=14.3
Q ss_pred CCCCCcEEEEcCCch-HHHH
Q 017338 320 ISLEKPVVTACGTGV-TACI 338 (373)
Q Consensus 320 i~~~~~IvvyC~~G~-ra~~ 338 (373)
...+.+|+|+|..|. ||..
T Consensus 95 ~~~g~~V~VHC~aGigRSgt 114 (166)
T PTZ00242 95 STPPETIAVHCVAGLGRAPI 114 (166)
T ss_pred ccCCCeEEEECCCCCCHHHH
Confidence 356889999998886 5553
No 131
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=62.22 E-value=4.8 Score=34.69 Aligned_cols=43 Identities=26% Similarity=0.275 Sum_probs=25.4
Q ss_pred CCCCCCcEEEEc-C----CchHHHHHHHHHHHcCCCCceeecccHHHH
Q 017338 319 GISLEKPVVTAC-G----TGVTACILALGLNRLGKHDVAVYDGSWTEW 361 (373)
Q Consensus 319 gi~~~~~IvvyC-~----~G~ra~~a~~~L~~~G~~~v~~~~GG~~~W 361 (373)
|++++..+++.| . .|.....++.+|+.+|..+...||||-+.-
T Consensus 96 G~~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~ 143 (170)
T PF09992_consen 96 GVTADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSST 143 (170)
T ss_dssp EE-TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--
T ss_pred EEeCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceE
Confidence 566666666665 4 367777888899999999999999997643
No 132
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=61.44 E-value=21 Score=35.72 Aligned_cols=85 Identities=18% Similarity=0.315 Sum_probs=51.1
Q ss_pred CcEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCcccccccCCCCCCHHHHHHHHHHc------CCC-----CCCcEE
Q 017338 259 TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQE------GIS-----LEKPVV 327 (373)
Q Consensus 259 ~~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~~~~~~~~~~~~l~~~~~~~------gi~-----~~~~Iv 327 (373)
.+.|||.|+.++| .+||+-.|.|++-.-+.++ +++++..+..+ .+. .++.+.
T Consensus 326 rFFiVDcRpaeqy-----------naGHlstaFhlDc~lmlqe------P~~Fa~av~sLl~aqrqtie~~s~aggeHlc 388 (669)
T KOG3636|consen 326 RFFIVDCRPAEQY-----------NAGHLSTAFHLDCVLMLQE------PEKFAIAVNSLLCAQRQTIERDSNAGGEHLC 388 (669)
T ss_pred EEEEEeccchhhc-----------ccccchhhhcccHHHHhcC------HHHHHHHHHHHHHHHHHhhhccccCCcceEE
Confidence 4679999999999 7999999999886655443 33443332211 122 234444
Q ss_pred EEcCCch------HHHHHHHHHHHcCCCCceeecccHHHHh
Q 017338 328 TACGTGV------TACILALGLNRLGKHDVAVYDGSWTEWG 362 (373)
Q Consensus 328 vyC~~G~------ra~~a~~~L~~~G~~~v~~~~GG~~~W~ 362 (373)
+. ++|. .-...+..|++ +..-|.++.||+..-.
T Consensus 389 fm-GsGr~EED~YmnMviA~FlQK-nk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 389 FM-GSGRDEEDNYMNMVIAMFLQK-NKLYVSFVQGGYKKLH 427 (669)
T ss_pred Ee-ccCcchHHHHHHHHHHHHHhc-CceEEEEecchHHHHH
Confidence 44 4442 12233444544 3334889999997655
No 133
>PLN02727 NAD kinase
Probab=55.93 E-value=41 Score=37.01 Aligned_cols=87 Identities=13% Similarity=0.076 Sum_probs=47.0
Q ss_pred CCcccHHHHHHhcCCCCe-EEEEeecCCCCCCCCChhh--hhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHH
Q 017338 75 EPVVSVDWLHANLREPDL-KVLDASWYMPDEQRNPFQE--YQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSA 151 (373)
Q Consensus 75 ~~~is~~~l~~~l~~~~~-~iiDvR~~~~~~~r~~~~e--y~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~ 151 (373)
..-++++++.++.+. ++ .||+.|......+-...++ -...+==.-+|+|+.. ...|+.|+++++...
T Consensus 266 sgQpspe~la~LA~~-GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~---------~~apt~EqVe~fa~~ 335 (986)
T PLN02727 266 GGQVTEEGLKWLLEK-GFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEV---------RTAPSAEQVEKFASL 335 (986)
T ss_pred eCCCCHHHHHHHHHC-CCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCC---------CCCCCHHHHHHHHHH
Confidence 345899999876665 54 7999982111000000000 0000001234666533 234667777766666
Q ss_pred cCCCCCCeEEEEcCCCCchH
Q 017338 152 LGLENKDGLVVYDGKGIFSA 171 (373)
Q Consensus 152 ~gi~~~~~VVvy~~~g~~~a 171 (373)
+.-...+||++||..|.+++
T Consensus 336 l~~slpkPVLvHCKSGarRA 355 (986)
T PLN02727 336 VSDSSKKPIYLHSKEGVWRT 355 (986)
T ss_pred HHhhcCCCEEEECCCCCchH
Confidence 52245789999999988543
No 134
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=54.60 E-value=15 Score=29.88 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCch-HHHH--HHHHHHHcCCC
Q 017338 309 DELKKRFEQEGISLEKPVVTACGTGV-TACI--LALGLNRLGKH 349 (373)
Q Consensus 309 ~~l~~~~~~~gi~~~~~IvvyC~~G~-ra~~--a~~~L~~~G~~ 349 (373)
+.+.+.+.+. ...+.+|+|+|..|. ||+. +++.+...|++
T Consensus 60 ~~~~~~i~~~-~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 60 DQAVEFIENA-ISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp HHHHHHHHHH-HHTTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhhhhh-hcccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 4444445443 456789999999886 5553 34455666764
No 135
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=54.53 E-value=25 Score=30.74 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHc--CCCCCCeEEEEcCCCCchHHH--HHHHHHHcCCCc
Q 017338 138 MLPSEEAFAAAVSAL--GLENKDGLVVYDGKGIFSAAR--VWWMFRVFGHDR 185 (373)
Q Consensus 138 ~l~~~e~~~~~l~~~--gi~~~~~VVvy~~~g~~~a~r--a~~~L~~~G~~~ 185 (373)
..|+.+++.+....+ -..+..+|||.|..|..+++. ++|.+.+.|...
T Consensus 84 ~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~ 135 (180)
T COG2453 84 TVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSL 135 (180)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCC
Confidence 345555555444433 234556999999987665555 456777766643
No 136
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=48.56 E-value=29 Score=29.67 Aligned_cols=42 Identities=33% Similarity=0.417 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEcCCch-HHH-HHHHHHHHcCCCC
Q 017338 308 ADELKKRFEQEGISLEKPVVTACGTGV-TAC-ILALGLNRLGKHD 350 (373)
Q Consensus 308 ~~~l~~~~~~~gi~~~~~IvvyC~~G~-ra~-~a~~~L~~~G~~~ 350 (373)
.+.++++|.-.--.+ .||+++|..|- |.. .++.+|..+|...
T Consensus 110 ~~~~~~~~~~l~~~~-~p~l~HC~aGKDRTG~~~alll~~lGV~~ 153 (164)
T PF13350_consen 110 AEAYRKIFELLADAP-GPVLFHCTAGKDRTGVVAALLLSLLGVPD 153 (164)
T ss_dssp HHHHHHHHHHHH-TT---EEEE-SSSSSHHHHHHHHHHHHTT--H
T ss_pred hHHHHHHHHHhccCC-CcEEEECCCCCccHHHHHHHHHHHcCCCH
Confidence 567777776442233 69999999886 555 4556677789863
No 137
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=47.78 E-value=33 Score=35.27 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=31.6
Q ss_pred CCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHH
Q 017338 322 LEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 359 (373)
Q Consensus 322 ~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~ 359 (373)
.+.|||++-+.--.+-.++..|.++|| +++.|.||-.
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k~ 552 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGKS 552 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCcc
Confidence 567899999887777789999999998 5999999864
No 138
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=47.70 E-value=55 Score=26.68 Aligned_cols=31 Identities=10% Similarity=0.139 Sum_probs=21.1
Q ss_pred CCCCCeEEEEcCCCCchHHH--HHHHHHHcCCC
Q 017338 154 LENKDGLVVYDGKGIFSAAR--VWWMFRVFGHD 184 (373)
Q Consensus 154 i~~~~~VVvy~~~g~~~a~r--a~~~L~~~G~~ 184 (373)
+..+.+|+|+|..|..+++. ++++++..|++
T Consensus 75 ~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 75 EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLS 107 (138)
T ss_pred hcCCCeEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 45678999999988644443 45566666763
No 139
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=46.08 E-value=2.4e+02 Score=27.20 Aligned_cols=88 Identities=17% Similarity=0.184 Sum_probs=54.7
Q ss_pred CCCCcccHHHHHHhcCCC---CeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHH
Q 017338 73 PKEPVVSVDWLHANLREP---DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAV 149 (373)
Q Consensus 73 ~~~~~is~~~l~~~l~~~---~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l 149 (373)
...-.||+..+.+++..- .++.+|.- .. .|.|-.++|.+.+.. ...+.+++
T Consensus 104 ~~~e~isak~~a~ll~~~g~d~vit~D~H-----------~~----~~~~~f~~p~~~l~~-----------~p~l~~~i 157 (320)
T PRK02269 104 RSREPITSKLVANMLEVAGVDRLLTVDLH-----------AA----QIQGFFDIPVDHLMG-----------APLIADYF 157 (320)
T ss_pred CCCCCchHHHHHHHHhhcCCCEEEEECCC-----------hH----HHhccccCCchhhhh-----------HHHHHHHH
Confidence 344578999888888652 58889982 12 244555667665432 23466677
Q ss_pred HHcCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEe
Q 017338 150 SALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVL 189 (373)
Q Consensus 150 ~~~gi~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L 189 (373)
...+.+.+..+|+.-+.|. ..++....+.+|.. +.++
T Consensus 158 ~~~~~~~~~~vvVsPd~G~--~~~A~~lA~~lg~~-~~~~ 194 (320)
T PRK02269 158 DRRGLVGDDVVVVSPDHGG--VTRARKLAQFLKTP-IAII 194 (320)
T ss_pred HHhCCCCCCcEEEEECccH--HHHHHHHHHHhCCC-EEEE
Confidence 6666655666777755554 56666667777763 4444
No 140
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=45.06 E-value=15 Score=30.30 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=28.8
Q ss_pred EEEEcCCc-hHHHHHHHHHHHc----CCCCceeecccHHHH
Q 017338 326 VVTACGTG-VTACILALGLNRL----GKHDVAVYDGSWTEW 361 (373)
Q Consensus 326 IvvyC~~G-~ra~~a~~~L~~~----G~~~v~~~~GG~~~W 361 (373)
|+|.|.++ .||.++-.+|+.+ +-.++.++..|..+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 67889664 5888888888877 556799999999877
No 141
>PRK12361 hypothetical protein; Provisional
Probab=45.05 E-value=64 Score=33.49 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=24.3
Q ss_pred cccCcccccccCCCCCCHHHHHHHHHHc--CCCCCCcEEEEcCCch-HHH
Q 017338 291 KCIPFPQMLDASQTLLPADELKKRFEQE--GISLEKPVVTACGTGV-TAC 337 (373)
Q Consensus 291 ~~ip~~~l~~~~~~~~~~~~l~~~~~~~--gi~~~~~IvvyC~~G~-ra~ 337 (373)
.++|..+... .+.+++++.++.. ....+++|+|+|..|. ||.
T Consensus 146 l~iPi~D~~~-----p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa 190 (547)
T PRK12361 146 LNIPILDHSV-----PTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSV 190 (547)
T ss_pred EEeecCCCCC-----CcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHH
Confidence 4566544322 2345666555421 2445689999998886 444
No 142
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=45.05 E-value=59 Score=29.98 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHHHHcC--CCCCCeEEEEcCCCCchHHH-HHHHHHHcCC
Q 017338 137 HMLPSEEAFAAAVSALG--LENKDGLVVYDGKGIFSAAR-VWWMFRVFGH 183 (373)
Q Consensus 137 ~~l~~~e~~~~~l~~~g--i~~~~~VVvy~~~g~~~a~r-a~~~L~~~G~ 183 (373)
+..|+.+.+.+++..+. +..+.+|+|.|..|..++.. ++..|...|+
T Consensus 148 g~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~~Gm 197 (241)
T PTZ00393 148 GDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIEFGM 197 (241)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 34566665555554432 34667899999988665554 3334444565
No 143
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=43.72 E-value=58 Score=30.05 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=19.6
Q ss_pred CCCCcEEEEcCCch-HHH-HHHHHHHHcCCC
Q 017338 321 SLEKPVVTACGTGV-TAC-ILALGLNRLGKH 349 (373)
Q Consensus 321 ~~~~~IvvyC~~G~-ra~-~a~~~L~~~G~~ 349 (373)
..+.+|+|+|..|. |+. .++..|-..|+.
T Consensus 168 ~~g~~VaVHC~AGlGRTGtl~AayLI~~Gms 198 (241)
T PTZ00393 168 KNNRAVAVHCVAGLGRAPVLASIVLIEFGMD 198 (241)
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 46779999998775 554 455555556764
No 144
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=43.42 E-value=65 Score=28.94 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=24.4
Q ss_pred CCcEEEEcCCch---HHHHHHHHHHHcCCCCceeec
Q 017338 323 EKPVVTACGTGV---TACILALGLNRLGKHDVAVYD 355 (373)
Q Consensus 323 ~~~IvvyC~~G~---ra~~a~~~L~~~G~~~v~~~~ 355 (373)
..+|+|.|++|+ ....++..|...|+. |.++-
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~~ 83 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVLL 83 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEEE
Confidence 678999998765 466788889999974 66553
No 145
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=43.40 E-value=41 Score=34.64 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCH
Q 017338 137 HMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGL 193 (373)
Q Consensus 137 ~~l~~~e~~~~~l~~~gi~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~ 193 (373)
.|+...+++.+++..+.-..+.++|||-+.-. .+-.++..|..+|| +++.|.||-
T Consensus 497 ~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk-~~d~lAk~LeK~g~-~~~tlHg~k 551 (673)
T KOG0333|consen 497 EMVSEDEKRKKLIEILESNFDPPIIIFVNTKK-GADALAKILEKAGY-KVTTLHGGK 551 (673)
T ss_pred EEecchHHHHHHHHHHHhCCCCCEEEEEechh-hHHHHHHHHhhccc-eEEEeeCCc
Confidence 45666777877777766556778888866432 26668889999998 799999983
No 146
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=42.06 E-value=32 Score=29.66 Aligned_cols=81 Identities=16% Similarity=0.128 Sum_probs=38.2
Q ss_pred EEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEEcCCCCchHH
Q 017338 93 KVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAA 172 (373)
Q Consensus 93 ~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~gi~~~~~VVvy~~~g~~~a~ 172 (373)
.||..|...+. .....|...+=-.-+++++..-.. +.+.++.+.+.+.|+.+--....||+|.|..|..+..
T Consensus 35 TII~L~~e~~~---~~~~~f~~~~~I~l~~~~~~~~~~-----~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG 106 (164)
T PF03162_consen 35 TIINLRPEPPS---QDFLEFAEENGIKLIHIPMSSSKD-----PWVPISEEQVAEALEIILDPRNYPVLIHCNHGKDRTG 106 (164)
T ss_dssp EEEE--SS------HHHHHHHHHTT-EEEE-------G-----GG----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHH
T ss_pred eEEEecCCCCC---HHHHHHHhhcCceEEEeccccccC-----ccccCCHHHHHHHHHHHhCCCCCCEEEEeCCCCcchh
Confidence 58888721110 011234444444555666543222 1344566777777765432345799999999988888
Q ss_pred HHHHHHHHc
Q 017338 173 RVWWMFRVF 181 (373)
Q Consensus 173 ra~~~L~~~ 181 (373)
-+...||.+
T Consensus 107 ~vvg~lRk~ 115 (164)
T PF03162_consen 107 LVVGCLRKL 115 (164)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 888888764
No 147
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=41.01 E-value=25 Score=28.58 Aligned_cols=48 Identities=23% Similarity=0.245 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCCCCC--cEEEEcCCchHHHHHHHHHHHc-CCCCceeecc
Q 017338 309 DELKKRFEQEGISLEK--PVVTACGTGVTACILALGLNRL-GKHDVAVYDG 356 (373)
Q Consensus 309 ~~l~~~~~~~gi~~~~--~IvvyC~~G~ra~~a~~~L~~~-G~~~v~~~~G 356 (373)
+=+.+++++.++++++ -|+|.+.....|..=+.+++++ |+.+|-+++-
T Consensus 24 eLl~~ii~~N~l~~edivSv~FT~T~DL~a~FPA~aaR~~~Gw~~Vplmc~ 74 (117)
T TIGR01796 24 ELLTELMERNELTPEDLISVIFTVTEDLHADFPAAAARGLPGWTDVPVMCA 74 (117)
T ss_pred HHHHHHHHHcCCCHHHEEEEEEEecCcccccChHHHHHhccCCCCcceecc
Confidence 3455667777888765 3677788888899888899998 9999988753
No 148
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=40.13 E-value=36 Score=26.50 Aligned_cols=38 Identities=21% Similarity=0.446 Sum_probs=27.6
Q ss_pred CCcEEEEcCCchHHHHHHHHH----HHcCCCCceeecccHHHH
Q 017338 323 EKPVVTACGTGVTACILALGL----NRLGKHDVAVYDGSWTEW 361 (373)
Q Consensus 323 ~~~IvvyC~~G~ra~~a~~~L----~~~G~~~v~~~~GG~~~W 361 (373)
.++|++.|++|..++.++..+ +..|++ +.+...+..+-
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~~~~ 44 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSYGAA 44 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecHHHH
Confidence 468999999999888766554 456874 66766666554
No 149
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=40.02 E-value=91 Score=26.87 Aligned_cols=19 Identities=16% Similarity=0.029 Sum_probs=15.2
Q ss_pred CCCCeEEEEcCCCCchHHH
Q 017338 155 ENKDGLVVYDGKGIFSAAR 173 (373)
Q Consensus 155 ~~~~~VVvy~~~g~~~a~r 173 (373)
..+.+|+|+|..|..+++.
T Consensus 96 ~~g~~V~VHC~aGigRSgt 114 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPI 114 (166)
T ss_pred cCCCeEEEECCCCCCHHHH
Confidence 4678999999988766665
No 150
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=39.37 E-value=60 Score=25.10 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=25.5
Q ss_pred cEEEEcCCchHHHHH-HH----HHHHcCCCCceeecccHHHHh
Q 017338 325 PVVTACGTGVTACIL-AL----GLNRLGKHDVAVYDGSWTEWG 362 (373)
Q Consensus 325 ~IvvyC~~G~ra~~a-~~----~L~~~G~~~v~~~~GG~~~W~ 362 (373)
+|++.|++|..++.. +. .|+..|+. +.+...+..+-.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~-~~v~~~~~~e~~ 45 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRVNEIE 45 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe-EEEEEecHHHHh
Confidence 599999999965544 43 35667884 777766776654
No 151
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=37.70 E-value=79 Score=32.89 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCC--chHHHHHHHHHHcCCCceEEe
Q 017338 157 KDGLVVYDGKGI--FSAARVWWMFRVFGHDRVWVL 189 (373)
Q Consensus 157 ~~~VVvy~~~g~--~~a~ra~~~L~~~G~~~v~~L 189 (373)
..+|+|+|+.|+ ...--++..|...|++ |.++
T Consensus 135 ~~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 135 YSRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CCEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 357889988553 2344566688899994 6654
No 152
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=36.94 E-value=36 Score=29.35 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCch-HHHHHHHHHHH-cCCC
Q 017338 309 DELKKRFEQEGISLEKPVVTACGTGV-TACILALGLNR-LGKH 349 (373)
Q Consensus 309 ~~l~~~~~~~gi~~~~~IvvyC~~G~-ra~~a~~~L~~-~G~~ 349 (373)
+.+.+.|+-.-=..+.||+++|..|. |...+...|++ .|+.
T Consensus 77 ~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~ 119 (164)
T PF03162_consen 77 EQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRKLQGWS 119 (164)
T ss_dssp HHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHHHcCCC
Confidence 45555444221124679999998875 66666666765 4765
No 153
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=36.27 E-value=35 Score=28.16 Aligned_cols=37 Identities=8% Similarity=0.162 Sum_probs=25.4
Q ss_pred EEEEcCCc-hHHHHHHHHHHHcCCCCceeecccHHHHh
Q 017338 326 VVTACGTG-VTACILALGLNRLGKHDVAVYDGSWTEWG 362 (373)
Q Consensus 326 IvvyC~~G-~ra~~a~~~L~~~G~~~v~~~~GG~~~W~ 362 (373)
|++.|.++ .||.++..+|+.+.-.++.+...|...|.
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~~ 38 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAWV 38 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCCC
Confidence 56778554 47777777787654345778888877663
No 154
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=36.16 E-value=44 Score=29.05 Aligned_cols=53 Identities=17% Similarity=0.123 Sum_probs=23.5
Q ss_pred eecCcccccccCCCCCCCCCCHHHHHHHHHHc--CCCCCCeEEEEcCCCCchHHH-HHHHHHHcC
Q 017338 121 LFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL--GLENKDGLVVYDGKGIFSAAR-VWWMFRVFG 182 (373)
Q Consensus 121 i~ip~~~l~~~~~~~~~~l~~~e~~~~~l~~~--gi~~~~~VVvy~~~g~~~a~r-a~~~L~~~G 182 (373)
+|+|+.+.. .|+.+.+.+.+.++ -+.++.+|+++|..|..++.. ++-+|..+|
T Consensus 104 ~h~PI~D~~---------aPd~~~~~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 104 HHLPIPDGS---------APDFAAAWQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp EE----TTS------------HHHHHHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred EecCccCCC---------CCCHHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 366665532 34444443333332 134678999999988776666 444555555
No 155
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=35.93 E-value=94 Score=24.37 Aligned_cols=48 Identities=21% Similarity=0.201 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccH
Q 017338 309 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSW 358 (373)
Q Consensus 309 ~~l~~~~~~~gi~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~ 358 (373)
+.+.+.+.+. .+.+.+++|||.+-..+...+..|+..+. ++..+.|+.
T Consensus 15 ~~i~~~i~~~-~~~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 62 (131)
T cd00079 15 EALLELLKEH-LKKGGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDG 62 (131)
T ss_pred HHHHHHHHhc-ccCCCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCC
Confidence 3444444432 33678899999997777778888887665 588888875
No 156
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=35.91 E-value=38 Score=26.94 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=26.6
Q ss_pred CcEEEEcCCchHHHHHHHHH----HHcCCCCceeecccHHHH
Q 017338 324 KPVVTACGTGVTACILALGL----NRLGKHDVAVYDGSWTEW 361 (373)
Q Consensus 324 ~~IvvyC~~G~ra~~a~~~L----~~~G~~~v~~~~GG~~~W 361 (373)
++|++.|++|..++.++..+ +..|++ +.+-..+..+-
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~~e~ 42 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITATEG 42 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 36899999999888777654 456874 66666666554
No 157
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=35.68 E-value=63 Score=26.30 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=23.7
Q ss_pred cEEEEcCCc-hHHHHHHHHHHHcCCCCceeecccHH
Q 017338 325 PVVTACGTG-VTACILALGLNRLGKHDVAVYDGSWT 359 (373)
Q Consensus 325 ~IvvyC~~G-~ra~~a~~~L~~~G~~~v~~~~GG~~ 359 (373)
.|++.|.++ .||.++-.+|+.++-.++.++..|..
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~ 37 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLE 37 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 578888543 57777777777765455677776654
No 158
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=35.21 E-value=88 Score=26.93 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=23.3
Q ss_pred CCCCCcEEEEcCCchHH---HHHHHHHHHcCCCCcee
Q 017338 320 ISLEKPVVTACGTGVTA---CILALGLNRLGKHDVAV 353 (373)
Q Consensus 320 i~~~~~IvvyC~~G~ra---~~a~~~L~~~G~~~v~~ 353 (373)
..+..+|++.|+.|+.. ..++..|...|++ |.+
T Consensus 22 ~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 22 SPKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp CCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred ccCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 36778999999988754 4566678888985 766
No 159
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=34.78 E-value=1.3e+02 Score=22.36 Aligned_cols=36 Identities=28% Similarity=0.243 Sum_probs=26.0
Q ss_pred CCCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeec
Q 017338 320 ISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYD 355 (373)
Q Consensus 320 i~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~ 355 (373)
.+....-++.++.|..+...+..|...|...+.+++
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~ 54 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCD 54 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 333444566677788888888888888767787775
No 160
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=34.61 E-value=51 Score=30.50 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=23.3
Q ss_pred CcEEEEcCCch---HHHHHHHHHHHcCCCCceee
Q 017338 324 KPVVTACGTGV---TACILALGLNRLGKHDVAVY 354 (373)
Q Consensus 324 ~~IvvyC~~G~---ra~~a~~~L~~~G~~~v~~~ 354 (373)
++|+|.|+.|+ .+..++..|...|| +|.+|
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~-~V~v~ 93 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGY-EVTVC 93 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCC-eEEEE
Confidence 67999997655 56677788888898 47776
No 161
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=33.90 E-value=79 Score=28.55 Aligned_cols=56 Identities=21% Similarity=0.357 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCCCCcEE-EEcCCchHHHHHHH--------------------HHHHcCCCCceee-cccHHHHhcC
Q 017338 309 DELKKRFEQEGISLEKPVV-TACGTGVTACILAL--------------------GLNRLGKHDVAVY-DGSWTEWGAQ 364 (373)
Q Consensus 309 ~~l~~~~~~~gi~~~~~Iv-vyC~~G~ra~~a~~--------------------~L~~~G~~~v~~~-~GG~~~W~~~ 364 (373)
.-...+++.+.+.+.+.|. +=|++|+.++..+. -|+.+||.||.+. ..|+..|...
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 4455556666788887777 45788887665443 2778999988654 4677888775
No 162
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=33.62 E-value=81 Score=25.51 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=18.3
Q ss_pred CCCeEEEEcCCCCchHHH--HHHHHHHcCC
Q 017338 156 NKDGLVVYDGKGIFSAAR--VWWMFRVFGH 183 (373)
Q Consensus 156 ~~~~VVvy~~~g~~~a~r--a~~~L~~~G~ 183 (373)
.+.+|+|+|..|..++.. +++++...|+
T Consensus 80 ~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 80 KGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred cCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 467999999988755553 3455555554
No 163
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=32.75 E-value=1e+02 Score=28.97 Aligned_cols=46 Identities=17% Similarity=0.128 Sum_probs=30.1
Q ss_pred HHHHHHHcCCCCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeeccc
Q 017338 311 LKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGS 357 (373)
Q Consensus 311 l~~~~~~~gi~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG 357 (373)
+.+.+++.+++.++++++.. .|-.|..+++.|..+|..++.+++-.
T Consensus 110 f~~~L~~~~~~~~~~vlilG-aGGaarAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 110 IAKLLASYQVPPDLVVALRG-SGGMAKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred HHHHHHhcCCCCCCeEEEEC-CcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 34445545666556666654 45556666777889999888887654
No 164
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=32.53 E-value=96 Score=29.13 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=32.0
Q ss_pred HHHHHHHHcCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecC
Q 017338 144 AFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDG 191 (373)
Q Consensus 144 ~~~~~l~~~gi~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~G 191 (373)
-|...|+..++..++++++....|. +..+++.|...|..++.+++=
T Consensus 109 Gf~~~L~~~~~~~~~~vlilGaGGa--arAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 109 AIAKLLASYQVPPDLVVALRGSGGM--AKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred HHHHHHHhcCCCCCCeEEEECCcHH--HHHHHHHHHHCCCCEEEEEeC
Confidence 4666776667766667888865332 334667788999999999873
No 165
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=32.35 E-value=47 Score=25.80 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=25.8
Q ss_pred cEEEEcCCchHHHHHHHHH----HHcCCCCceeecccHHHH
Q 017338 325 PVVTACGTGVTACILALGL----NRLGKHDVAVYDGSWTEW 361 (373)
Q Consensus 325 ~IvvyC~~G~ra~~a~~~L----~~~G~~~v~~~~GG~~~W 361 (373)
+|++.|++|..++.++..+ +..|++ +.+...+..+-
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~~~~ 40 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPESEL 40 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 4889999999988776654 446774 66666666554
No 166
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=31.80 E-value=56 Score=32.40 Aligned_cols=48 Identities=25% Similarity=0.270 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHHH
Q 017338 309 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTE 360 (373)
Q Consensus 309 ~~l~~~~~~~gi~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~~ 360 (373)
..|-.++.+. ...++||+|++...+.+.+.+|+.+||. .--+.|-+..
T Consensus 289 ~yLV~ll~e~---~g~s~iVF~~t~~tt~~la~~L~~lg~~-a~~LhGqmsq 336 (476)
T KOG0330|consen 289 TYLVYLLNEL---AGNSVIVFCNTCNTTRFLALLLRNLGFQ-AIPLHGQMSQ 336 (476)
T ss_pred hhHHHHHHhh---cCCcEEEEEeccchHHHHHHHHHhcCcc-eecccchhhH
Confidence 3444455432 3479999999999999999999999995 6667776654
No 167
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=31.63 E-value=36 Score=28.00 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=32.0
Q ss_pred EEEEcCCCCchHHHHHHHHHHc----CCCceEEecCCHHHHHhCCCCcc
Q 017338 160 LVVYDGKGIFSAARVWWMFRVF----GHDRVWVLDGGLPRWRASGYDVE 204 (373)
Q Consensus 160 VVvy~~~g~~~a~ra~~~L~~~----G~~~v~~L~GG~~~W~~~g~pv~ 204 (373)
|+|.|..+..+|..|..+|+.+ +-.++.+.-.|+.+| .|.++.
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~--~~~~~~ 47 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW--PGEPVD 47 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST--TTSSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc--cccccc
Confidence 4566776666688888889888 667899999998877 444443
No 168
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=31.00 E-value=1.2e+02 Score=27.67 Aligned_cols=46 Identities=28% Similarity=0.356 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHcCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEe
Q 017338 139 LPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVL 189 (373)
Q Consensus 139 l~~~e~~~~~l~~~gi~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L 189 (373)
-|+++.|++.+...|++.....+++|++. +-....+.+|..-|.++
T Consensus 160 KP~~~afE~a~k~agi~~p~~t~FfDDS~-----~NI~~ak~vGl~tvlv~ 205 (244)
T KOG3109|consen 160 KPSEEAFEKAMKVAGIDSPRNTYFFDDSE-----RNIQTAKEVGLKTVLVG 205 (244)
T ss_pred cCCHHHHHHHHHHhCCCCcCceEEEcCch-----hhHHHHHhccceeEEEE
Confidence 47889999999999999777788887743 22334667898766654
No 169
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=30.27 E-value=1.1e+02 Score=31.10 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=23.4
Q ss_pred CCcEEEEcCCch---HHHHHHHHHHHcCCCCceee
Q 017338 323 EKPVVTACGTGV---TACILALGLNRLGKHDVAVY 354 (373)
Q Consensus 323 ~~~IvvyC~~G~---ra~~a~~~L~~~G~~~v~~~ 354 (373)
.++|+|.|+.|+ .+..++..|...|++ |.+|
T Consensus 59 ~~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 92 (462)
T PLN03049 59 YRRVLALCGPGNNGGDGLVAARHLHHFGYK-PSIC 92 (462)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEE
Confidence 367999998765 455677788889995 7665
No 170
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=29.51 E-value=56 Score=24.47 Aligned_cols=32 Identities=31% Similarity=0.650 Sum_probs=21.8
Q ss_pred cEEEEcCCchHHHHHH-HH----HHHcCCCCceeeccc
Q 017338 325 PVVTACGTGVTACILA-LG----LNRLGKHDVAVYDGS 357 (373)
Q Consensus 325 ~IvvyC~~G~ra~~a~-~~----L~~~G~~~v~~~~GG 357 (373)
+|++.|++|..++..+ .. ++..|++ +....++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~-~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE-VEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC-EEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc-eEEEEec
Confidence 4899999999877655 44 4567864 5555544
No 171
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.49 E-value=58 Score=32.51 Aligned_cols=54 Identities=24% Similarity=0.265 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHcCCCCCCcEEEEcCCchHH----------HHHHHHHHHcCCCCceeecccHHHHhcCC
Q 017338 305 LLPADELKKRFEQEGISLEKPVVTACGTGVTA----------CILALGLNRLGKHDVAVYDGSWTEWGAQP 365 (373)
Q Consensus 305 ~~~~~~l~~~~~~~gi~~~~~IvvyC~~G~ra----------~~a~~~L~~~G~~~v~~~~GG~~~W~~~~ 365 (373)
..+.++++++++. .++.+||+--.++ ......|..+|++ +.++-||+.+|...+
T Consensus 18 i~~ee~l~~ll~~------~~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh~-~ivLigd~ta~IgDp 81 (401)
T COG0162 18 ITDEEELRKLLEE------GPLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHK-PIVLIGDATAMIGDP 81 (401)
T ss_pred cCcHHHHHHHHhc------CCceEEEeeCCCCCccchhhHHHHHHHHHHHHCCCe-EEEEecccceecCCC
Confidence 3455777777662 2899999643332 1122235678985 999999999999875
No 172
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=29.17 E-value=1.2e+02 Score=31.59 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=23.3
Q ss_pred CCcEEEEcCCchH---HHHHHHHHHHcCCCCceee
Q 017338 323 EKPVVTACGTGVT---ACILALGLNRLGKHDVAVY 354 (373)
Q Consensus 323 ~~~IvvyC~~G~r---a~~a~~~L~~~G~~~v~~~ 354 (373)
.++|+|.|+.|+. ...++..|...||+ |.++
T Consensus 135 ~~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 135 YSRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CCEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 3679999987664 55677778888995 7766
No 173
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=29.00 E-value=49 Score=26.04 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=27.6
Q ss_pred cEEEEcCCchHHHHHHHHH----HHcCCCCceeecccHHHHh
Q 017338 325 PVVTACGTGVTACILALGL----NRLGKHDVAVYDGSWTEWG 362 (373)
Q Consensus 325 ~IvvyC~~G~ra~~a~~~L----~~~G~~~v~~~~GG~~~W~ 362 (373)
+|++.|++|.+|+.++..+ +..|. ++.+...+..+-.
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi-~~~i~a~~~~e~~ 42 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGV-PLEAAAGAYGSHY 42 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-cEEEEEeeHHHHH
Confidence 4889999999888887655 45687 4777777776644
No 174
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=28.92 E-value=70 Score=26.31 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=29.9
Q ss_pred EEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHHHHHhCCCCcc
Q 017338 160 LVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVE 204 (373)
Q Consensus 160 VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~~W~~~g~pv~ 204 (373)
|++.|.....+|..+..+|+.+.-.++.+...|+.+| .|.++.
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~--~g~~~~ 43 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW--VGGGAD 43 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC--CCCCCC
Confidence 4566765555688888888877655688898898877 344443
No 175
>PRK10126 tyrosine phosphatase; Provisional
Probab=28.37 E-value=80 Score=26.49 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=28.2
Q ss_pred CcEEEEcCCc-hHHHHHHHHHHHcCCCCceeecccHHHH
Q 017338 324 KPVVTACGTG-VTACILALGLNRLGKHDVAVYDGSWTEW 361 (373)
Q Consensus 324 ~~IvvyC~~G-~ra~~a~~~L~~~G~~~v~~~~GG~~~W 361 (373)
..|+|.|.++ .||.++-.+|+.++- ++.+...|...|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~-~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEeeeccCC
Confidence 4799999654 588888888888763 477888888666
No 176
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=27.95 E-value=86 Score=25.23 Aligned_cols=41 Identities=7% Similarity=0.147 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCCchHHH--HHHHHHHcCCC
Q 017338 143 EAFAAAVSALGLENKDGLVVYDGKGIFSAAR--VWWMFRVFGHD 184 (373)
Q Consensus 143 e~~~~~l~~~gi~~~~~VVvy~~~g~~~a~r--a~~~L~~~G~~ 184 (373)
+.+.+.+... ..++.+|+|+|..|..+++. +++++...|++
T Consensus 60 ~~~~~~i~~~-~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 60 DQAVEFIENA-ISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp HHHHHHHHHH-HHTTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhhhhh-hcccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 3444455543 45678899999988755444 45556666763
No 177
>PLN02645 phosphoglycolate phosphatase
Probab=27.89 E-value=82 Score=30.05 Aligned_cols=112 Identities=11% Similarity=0.179 Sum_probs=57.7
Q ss_pred CcccHHHHHHhcCCCCeEEEEeecCCCCCCCCChhhhhhCC-CcCceecCcccccccCCCC----CCCCCCHHHHHHHHH
Q 017338 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAH-IPGALFFDVDGVADRTTNL----PHMLPSEEAFAAAVS 150 (373)
Q Consensus 76 ~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~ey~~gH-IpGAi~ip~~~l~~~~~~~----~~~l~~~e~~~~~l~ 150 (373)
...+.+.+.+++.+-+.+++|+- . --+..+| |||+... +..+......+ .....+.+++.+.|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~D~D---------G-tl~~~~~~~~ga~e~-l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~ 82 (311)
T PLN02645 14 QLLTLENADELIDSVETFIFDCD---------G-VIWKGDKLIEGVPET-LDMLRSMGKKLVFVTNNSTKSRAQYGKKFE 82 (311)
T ss_pred ccCCHHHHHHHHHhCCEEEEeCc---------C-CeEeCCccCcCHHHH-HHHHHHCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 34667788888877689999992 2 2344333 6776432 21222111000 112334566667778
Q ss_pred HcCCCCCCeEEEEcCCCCchHHHHHHHHHHcCC---CceEEecCC-H-HHHHhCCCCcc
Q 017338 151 ALGLENKDGLVVYDGKGIFSAARVWWMFRVFGH---DRVWVLDGG-L-PRWRASGYDVE 204 (373)
Q Consensus 151 ~~gi~~~~~VVvy~~~g~~~a~ra~~~L~~~G~---~~v~~L~GG-~-~~W~~~g~pv~ 204 (373)
.+|+.....-|+-. ...+...|+..++ ++|+++... + ..-.+.|..+.
T Consensus 83 ~lGi~~~~~~I~ts------~~~~~~~l~~~~~~~~~~V~viG~~~~~~~l~~~Gi~~~ 135 (311)
T PLN02645 83 SLGLNVTEEEIFSS------SFAAAAYLKSINFPKDKKVYVIGEEGILEELELAGFQYL 135 (311)
T ss_pred HCCCCCChhhEeeh------HHHHHHHHHhhccCCCCEEEEEcCHHHHHHHHHCCCEEe
Confidence 88886544433331 1223345555554 347776542 2 33445566543
No 178
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=27.81 E-value=86 Score=26.26 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=27.9
Q ss_pred CcEEEEcCCc-hHHHHHHHHHHHcCCCCceeecccHHHH
Q 017338 324 KPVVTACGTG-VTACILALGLNRLGKHDVAVYDGSWTEW 361 (373)
Q Consensus 324 ~~IvvyC~~G-~ra~~a~~~L~~~G~~~v~~~~GG~~~W 361 (373)
+.|+|.|.+. .||.++-.+|+.+.- ++.+...|...|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 4799999554 588888888887653 577888888766
No 179
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=27.76 E-value=1.4e+02 Score=28.11 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=23.7
Q ss_pred CCcEEEEcCCchHHHHHHHHHHHcCCCCceeeccc
Q 017338 323 EKPVVTACGTGVTACILALGLNRLGKHDVAVYDGS 357 (373)
Q Consensus 323 ~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG 357 (373)
.++|++. +.|.-+..+++.|..+|.++|.+++-.
T Consensus 127 ~k~vlIl-GaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 127 LERVVQL-GAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CCEEEEE-CCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3455555 455556667777888999889888754
No 180
>PRK05852 acyl-CoA synthetase; Validated
Probab=27.60 E-value=1.1e+02 Score=30.98 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHH
Q 017338 309 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 359 (373)
Q Consensus 309 ~~l~~~~~~~gi~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~ 359 (373)
..+.+.|.+.|+.+++.|.++|..+.....+++++...|.- +..++-++.
T Consensus 54 ~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~-~v~l~~~~~ 103 (534)
T PRK05852 54 DDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLV-VVPLDPALP 103 (534)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcE-EeecCCCCC
Confidence 56777888889999999999999999999899988888873 333444443
No 181
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=27.46 E-value=1.4e+02 Score=28.16 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=27.9
Q ss_pred HHHHHHHcCCC-CCCcEEEEcCCchHHHHHHHHHHHcCCCCceeeccc
Q 017338 311 LKKRFEQEGIS-LEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGS 357 (373)
Q Consensus 311 l~~~~~~~gi~-~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG 357 (373)
+.+.+++.+++ .++++++...+|. |..+++.|...|.+++.+++-.
T Consensus 111 f~~~l~~~~~~~~~k~vlvlGaGGa-arAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 111 HIRAIKESGFDIKGKTMVLLGAGGA-STAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred HHHHHHhcCCCcCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCC
Confidence 33444444554 3455555544444 5556777888899888888654
No 182
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=27.44 E-value=7.7e+02 Score=26.20 Aligned_cols=35 Identities=34% Similarity=0.304 Sum_probs=25.5
Q ss_pred CCCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeec
Q 017338 320 ISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYD 355 (373)
Q Consensus 320 i~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~ 355 (373)
+..+++|||. ++|..+.-++..|..+|.++|.++.
T Consensus 320 ~~~gk~VvVI-GgG~~a~e~A~~l~~~Ga~~Vtlv~ 354 (652)
T PRK12814 320 LHPGKKVVVI-GGGNTAIDAARTALRLGAESVTILY 354 (652)
T ss_pred ccCCCeEEEE-CCCHHHHHHHHHHHHcCCCeEEEee
Confidence 4456788887 5567777777788888987787654
No 183
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=27.20 E-value=53 Score=32.99 Aligned_cols=42 Identities=21% Similarity=0.356 Sum_probs=34.7
Q ss_pred EEEEcCCchHHHHHHHHHHHcCCCCceeecccH---------HHHhcCCCCCC
Q 017338 326 VVTACGTGVTACILALGLNRLGKHDVAVYDGSW---------TEWGAQPDTPV 369 (373)
Q Consensus 326 IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~---------~~W~~~~g~Pv 369 (373)
=||||++-...-..+-.|...|. +...|..|+ ..|... ..||
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi-~A~AYHAGLK~~ERTeVQe~WM~~-~~Pv 308 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAGI-PAMAYHAGLKKKERTEVQEKWMNN-EIPV 308 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcCc-chHHHhcccccchhHHHHHHHhcC-CCCE
Confidence 59999998777788888999998 477888887 679887 7776
No 184
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=27.09 E-value=67 Score=24.24 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=22.7
Q ss_pred CcEEEEcCCchHHHHH-HHH----HHHcCCCCceeecccHHHH
Q 017338 324 KPVVTACGTGVTACIL-ALG----LNRLGKHDVAVYDGSWTEW 361 (373)
Q Consensus 324 ~~IvvyC~~G~ra~~a-~~~----L~~~G~~~v~~~~GG~~~W 361 (373)
+.|+++|++|..++.. ... ++..|.. +.+...+..+.
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~~~~-~~v~~~~~~~~ 42 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKAGLE-IPVTNSAIDEL 42 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCc-eEEEEcchhhC
Confidence 3689999999866644 433 4455653 44555555554
No 185
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=26.87 E-value=1.1e+02 Score=25.98 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCCCchHHH-HHHHHHHcCCCc
Q 017338 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAAR-VWWMFRVFGHDR 185 (373)
Q Consensus 142 ~e~~~~~l~~~gi~~~~~VVvy~~~g~~~a~r-a~~~L~~~G~~~ 185 (373)
.+.|.+.|..+--.+ .+|+++|..|..+..- ++.+|..+|++.
T Consensus 110 ~~~~~~~~~~l~~~~-~p~l~HC~aGKDRTG~~~alll~~lGV~~ 153 (164)
T PF13350_consen 110 AEAYRKIFELLADAP-GPVLFHCTAGKDRTGVVAALLLSLLGVPD 153 (164)
T ss_dssp HHHHHHHHHHHH-TT---EEEE-SSSSSHHHHHHHHHHHHTT--H
T ss_pred hHHHHHHHHHhccCC-CcEEEECCCCCccHHHHHHHHHHHcCCCH
Confidence 567777777665444 6999999988765554 455667788853
No 186
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=26.80 E-value=1.1e+02 Score=31.61 Aligned_cols=35 Identities=26% Similarity=0.185 Sum_probs=31.0
Q ss_pred CcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHH
Q 017338 324 KPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 359 (373)
Q Consensus 324 ~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~ 359 (373)
..+||+|++-..+..++..|...||+ +..+.|++.
T Consensus 274 ~~~IVF~~tk~~~~~l~~~l~~~g~~-~~~lhG~l~ 308 (513)
T COG0513 274 GRVIVFVRTKRLVEELAESLRKRGFK-VAALHGDLP 308 (513)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHCCCe-EEEecCCCC
Confidence 35999999999999999999999985 999999864
No 187
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=26.74 E-value=1.1e+02 Score=22.87 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=12.7
Q ss_pred CCCcEEEEcCCch-HHHH
Q 017338 322 LEKPVVTACGTGV-TACI 338 (373)
Q Consensus 322 ~~~~IvvyC~~G~-ra~~ 338 (373)
.+.+|+|+|..|. |+..
T Consensus 38 ~~~pvlVHC~~G~gRtg~ 55 (105)
T smart00404 38 SSGPVVVHCSAGVGRTGT 55 (105)
T ss_pred CCCCEEEEeCCCCChhhH
Confidence 3679999998776 5553
No 188
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=26.74 E-value=1.1e+02 Score=22.87 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=12.7
Q ss_pred CCCcEEEEcCCch-HHHH
Q 017338 322 LEKPVVTACGTGV-TACI 338 (373)
Q Consensus 322 ~~~~IvvyC~~G~-ra~~ 338 (373)
.+.+|+|+|..|. |+..
T Consensus 38 ~~~pvlVHC~~G~gRtg~ 55 (105)
T smart00012 38 SSGPVVVHCSAGVGRTGT 55 (105)
T ss_pred CCCCEEEEeCCCCChhhH
Confidence 3679999998776 5553
No 189
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.57 E-value=1.2e+02 Score=24.99 Aligned_cols=82 Identities=13% Similarity=0.027 Sum_probs=42.4
Q ss_pred CcccHHHHHHhcCCCCeEEEEeecCCCCCCCC--Ch-----hhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHH
Q 017338 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRN--PF-----QEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAA 148 (373)
Q Consensus 76 ~~is~~~l~~~l~~~~~~iiDvR~~~~~~~r~--~~-----~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~ 148 (373)
+-++++++.+.-..+=..||.-|.+ .+-. |. ..-+..-+. -.+||...-. -.--+.+.|++.
T Consensus 14 gQi~~~D~~~iaa~GFksiI~nRPD---gEe~~QP~~~~i~~aa~~aGl~-y~~iPV~~~~-------iT~~dV~~f~~A 82 (130)
T COG3453 14 GQISPADIASIAALGFKSIICNRPD---GEEPGQPGFAAIAAAAEAAGLT-YTHIPVTGGG-------ITEADVEAFQRA 82 (130)
T ss_pred CCCCHHHHHHHHHhccceecccCCC---CCCCCCCChHHHHHHHHhcCCc-eEEeecCCCC-------CCHHHHHHHHHH
Confidence 4578888887665533468888721 1100 00 001112222 3455554310 001123556667
Q ss_pred HHHcCCCCCCeEEEEcCCCCchHHH
Q 017338 149 VSALGLENKDGLVVYDGKGIFSAAR 173 (373)
Q Consensus 149 l~~~gi~~~~~VVvy~~~g~~~a~r 173 (373)
|.+. +-+|+.||.+|.+ +..
T Consensus 83 l~ea----egPVlayCrsGtR-s~~ 102 (130)
T COG3453 83 LDEA----EGPVLAYCRSGTR-SLN 102 (130)
T ss_pred HHHh----CCCEEeeecCCch-HHH
Confidence 6664 5789999998875 443
No 190
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=26.32 E-value=40 Score=27.48 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCCCCC--cEEEEcCCchHHHHHHHHHHHc-CCCCceeec
Q 017338 309 DELKKRFEQEGISLEK--PVVTACGTGVTACILALGLNRL-GKHDVAVYD 355 (373)
Q Consensus 309 ~~l~~~~~~~gi~~~~--~IvvyC~~G~ra~~a~~~L~~~-G~~~v~~~~ 355 (373)
+=+.++++..++++++ -|+|.+.....|..-+.+++.+ |+.+|-++.
T Consensus 24 eLl~~i~~~N~l~~~dIvSi~FT~T~DL~a~fPA~a~R~~~g~~~Vpl~c 73 (118)
T PF07736_consen 24 ELLEEILERNELSPEDIVSIIFTVTPDLDAAFPAAAARELPGWDDVPLMC 73 (118)
T ss_dssp HHHHHHHHHTT--GGGEEEEEEEE-TT--SS-TCHHHHHTTTGTTSEEEE
T ss_pred HHHHHHHHHcCCCHHHEEEEEEEeCCCcCccChHHHHHccCCCCccceec
Confidence 3455677777888765 3667777788888888899998 999998774
No 191
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=26.27 E-value=1.6e+02 Score=27.99 Aligned_cols=50 Identities=18% Similarity=0.285 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCCCC--CcEEEEcCCchHHHHHHHHHHHcCCCCceeecccH
Q 017338 309 DELKKRFEQEGISLE--KPVVTACGTGVTACILALGLNRLGKHDVAVYDGSW 358 (373)
Q Consensus 309 ~~l~~~~~~~gi~~~--~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~ 358 (373)
.-+.+.|.+.+++.+ ..-++.++.|--|..+++.|...|.+++.+++-..
T Consensus 109 ~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~ 160 (283)
T COG0169 109 IGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTR 160 (283)
T ss_pred HHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 445556665444333 24455556666677788889999998899887643
No 192
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=25.57 E-value=86 Score=22.60 Aligned_cols=29 Identities=28% Similarity=0.504 Sum_probs=23.2
Q ss_pred ccccCHHHHHHHhhCC-CcEEEEecCCCcc
Q 017338 243 HLIWTLEQVKRNIEEG-TYQLVDARSKARF 271 (373)
Q Consensus 243 ~~~is~~el~~~~~~~-~~~iIDvR~~~e~ 271 (373)
...|+.+++.+++.++ ++.++|+.+-++.
T Consensus 17 s~YiTL~di~~lV~~g~~~~V~D~ktgeDi 46 (64)
T PF07879_consen 17 SSYITLEDIAQLVREGEDFKVVDAKTGEDI 46 (64)
T ss_pred ceeEeHHHHHHHHHCCCeEEEEECCCCccc
Confidence 3468999999998764 6999999986654
No 193
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=25.52 E-value=6.2e+02 Score=25.45 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCCHH-HHH---hCCCCcccCCCcchhHhhhhhHHHHHHhhcCccc
Q 017338 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLP-RWR---ASGYDVESSASGDAILKASAASEAIEKVYQGQVV 231 (373)
Q Consensus 156 ~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG~~-~W~---~~g~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (373)
+++.+++... |.+ +.-++..|...|+.++.+.|=-+. ++. +-|..+..... ....+ ..
T Consensus 177 ~~~~vlvIGA-Gem-~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~e-------------l~~~l---~~ 238 (414)
T COG0373 177 KDKKVLVIGA-GEM-GELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEE-------------LLEAL---AE 238 (414)
T ss_pred ccCeEEEEcc-cHH-HHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHH-------------HHHhh---hh
Confidence 6677888755 443 667888999999999999998774 331 12211111110 00000 01
Q ss_pred CCcceeeccCCccccCHHHHHHHhhCCC-cEEEEecCCCccCCCCCCCCCCCCcccCCCCcccCccccc
Q 017338 232 GPTTFQTKFQPHLIWTLEQVKRNIEEGT-YQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQML 299 (373)
Q Consensus 232 ~~~~~~~~~~~~~~is~~el~~~~~~~~-~~iIDvR~~~e~~G~~~~~~~~~~~GhIpGA~~ip~~~l~ 299 (373)
...-|...-.++.+++.+.+...+.... ..+||.--|...+. ..|.++|...+..+++.
T Consensus 239 ~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdie~---------~v~~l~~v~l~~iDDL~ 298 (414)
T COG0373 239 ADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDVEP---------EVGELPNVFLYTIDDLE 298 (414)
T ss_pred CCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCCCc---------cccCcCCeEEEehhhHH
Confidence 2234555667888999999988876543 48999988877732 56778888888877764
No 194
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=25.45 E-value=1.2e+02 Score=31.77 Aligned_cols=38 Identities=24% Similarity=0.144 Sum_probs=32.0
Q ss_pred CCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHH
Q 017338 321 SLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 359 (373)
Q Consensus 321 ~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~ 359 (373)
.....+||||++-..+..++..|...|+ ++..|.|++.
T Consensus 255 ~~~~k~LVF~nt~~~ae~l~~~L~~~g~-~v~~lhg~l~ 292 (572)
T PRK04537 255 SEGARTMVFVNTKAFVERVARTLERHGY-RVGVLSGDVP 292 (572)
T ss_pred ccCCcEEEEeCCHHHHHHHHHHHHHcCC-CEEEEeCCCC
Confidence 4567899999998888889999999998 4888988853
No 195
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=25.23 E-value=2.5e+02 Score=22.21 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecc
Q 017338 309 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDG 356 (373)
Q Consensus 309 ~~l~~~~~~~gi~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~G 356 (373)
+++++.++ .++.++.|++.|.-+.-+...........+++++++.|
T Consensus 45 ~~l~~~i~--~~~~~~~vlil~Dl~ggsp~n~a~~~~~~~~~~~vi~G 90 (116)
T PF03610_consen 45 EKLEEAIE--ELDEGDGVLILTDLGGGSPFNEAARLLLDKPNIRVISG 90 (116)
T ss_dssp HHHHHHHH--HCCTTSEEEEEESSTTSHHHHHHHHHHCTSTTEEEEES
T ss_pred HHHHHHHH--hccCCCcEEEEeeCCCCccchHHHHHhccCCCEEEEec
Confidence 45555554 36678889999975444444333344455556767655
No 196
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.11 E-value=1.2e+02 Score=30.81 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHH
Q 017338 309 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 359 (373)
Q Consensus 309 ~~l~~~~~~~gi~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~ 359 (373)
+++.+.+.+ ..+++..||||.+-..+-.++..|+..|+. +..|.||+.
T Consensus 214 ~~l~~~l~~--~~~~~~~IIF~~s~~~~e~la~~L~~~g~~-~~~~H~~l~ 261 (470)
T TIGR00614 214 EDLLRFIRK--EFKGKSGIIYCPSRKKSEQVTASLQNLGIA-AGAYHAGLE 261 (470)
T ss_pred HHHHHHHHH--hcCCCceEEEECcHHHHHHHHHHHHhcCCC-eeEeeCCCC
Confidence 445555543 234567799999988888899999999984 888889863
No 197
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=25.11 E-value=1.3e+02 Score=31.74 Aligned_cols=47 Identities=19% Similarity=0.240 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHH
Q 017338 309 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 359 (373)
Q Consensus 309 ~~l~~~~~~~gi~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~ 359 (373)
+++...+.. .+++..||||.+-..+-..+..|+..|+. +..|.||+.
T Consensus 225 ~~l~~~l~~---~~~~~~IIFc~tr~~~e~la~~L~~~g~~-v~~~Ha~l~ 271 (607)
T PRK11057 225 DQLMRYVQE---QRGKSGIIYCNSRAKVEDTAARLQSRGIS-AAAYHAGLD 271 (607)
T ss_pred HHHHHHHHh---cCCCCEEEEECcHHHHHHHHHHHHhCCCC-EEEecCCCC
Confidence 445444442 35678999999987888889999999984 889999873
No 198
>PRK13530 arsenate reductase; Provisional
Probab=24.88 E-value=1.2e+02 Score=25.03 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=25.0
Q ss_pred CcEEEEcCCc-hHHHHHHHHHHHcCCCCceeecccHH
Q 017338 324 KPVVTACGTG-VTACILALGLNRLGKHDVAVYDGSWT 359 (373)
Q Consensus 324 ~~IvvyC~~G-~ra~~a~~~L~~~G~~~v~~~~GG~~ 359 (373)
+.|+|.|.++ .||.++-.+++.+.-.++.++..|..
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~~ 40 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGIE 40 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 5788999554 57777777777654346777887763
No 199
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=24.58 E-value=1.7e+02 Score=27.26 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=27.4
Q ss_pred CCCCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHH
Q 017338 319 GISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 359 (373)
Q Consensus 319 gi~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~ 359 (373)
+.+....-++..+.|..+..++..|...|+.+|.+++=...
T Consensus 118 ~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~ 158 (278)
T PRK00258 118 GVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVE 158 (278)
T ss_pred CCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 43333333444466777777888888999888988876544
No 200
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=24.47 E-value=1.5e+02 Score=28.66 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchHHHHHHHHHHHcCCC
Q 017338 309 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKH 349 (373)
Q Consensus 309 ~~l~~~~~~~gi~~~~~IvvyC~~G~ra~~a~~~L~~~G~~ 349 (373)
..+.+.|.+.|+.+++.|+++|........+.+++-.+|..
T Consensus 32 ~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~ 72 (417)
T PF00501_consen 32 RKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI 72 (417)
T ss_dssp HHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred HHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence 66777888889999999999999988888888888888974
No 201
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=24.21 E-value=2.4e+02 Score=22.73 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHcCCCCCCcEEEEcCCchHHHH---HHHHHHHcCCCCceee
Q 017338 307 PADELKKRFEQEGISLEKPVVTACGTGVTACI---LALGLNRLGKHDVAVY 354 (373)
Q Consensus 307 ~~~~l~~~~~~~gi~~~~~IvvyC~~G~ra~~---a~~~L~~~G~~~v~~~ 354 (373)
+.+++...+.+. +++.+|++.+.....-.. +...++.+|+++|.+.
T Consensus 70 ~~~~L~~~l~~~--~~~~~v~i~aD~~~~~~~vv~v~d~~~~~G~~~v~l~ 118 (121)
T TIGR02804 70 SLEELEAEIAQL--NKDQKVTLKSDKEAKFQDFVTITDMLKAKEHENVQIV 118 (121)
T ss_pred CHHHHHHHHHhh--CCCCeEEEEeCCCCCHhHHHHHHHHHHHcCCCeEEEE
Confidence 457777777764 567789999987664443 4455788999988653
No 202
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=24.13 E-value=1.4e+02 Score=25.06 Aligned_cols=33 Identities=6% Similarity=0.124 Sum_probs=17.3
Q ss_pred CCCCCCHHHHHHHHHHc-CCCCCCcEEEEcCCch
Q 017338 302 SQTLLPADELKKRFEQE-GISLEKPVVTACGTGV 334 (373)
Q Consensus 302 ~~~~~~~~~l~~~~~~~-gi~~~~~IvvyC~~G~ 334 (373)
+...+.++.+.+.+.-. .++++..++|+|..|.
T Consensus 102 d~~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~ 135 (149)
T PF14566_consen 102 DHQAPDPEDIDAFINFVKSLPKDTWLHFHCQAGR 135 (149)
T ss_dssp TTS---HHHHHHHHHHHHTS-TT-EEEEE-SSSS
T ss_pred CcCCCCHHHHHHHHHHHHhCCCCCeEEEECCCCC
Confidence 34455555555555422 4577899999998875
No 203
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.10 E-value=2e+02 Score=25.92 Aligned_cols=58 Identities=21% Similarity=0.286 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHcCCCCCCeEEEE-cCCCCc-------------------hHHHHHHHHHHcCCCceEEec-CCHHHHHh
Q 017338 141 SEEAFAAAVSALGLENKDGLVVY-DGKGIF-------------------SAARVWWMFRVFGHDRVWVLD-GGLPRWRA 198 (373)
Q Consensus 141 ~~e~~~~~l~~~gi~~~~~VVvy-~~~g~~-------------------~a~ra~~~L~~~G~~~v~~L~-GG~~~W~~ 198 (373)
.+...+.+++.+.+.+...|+=. |++|-. .+..+-..|+.+|++||.+.. .|..+|.+
T Consensus 57 ~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~ 135 (209)
T COG2518 57 APHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE 135 (209)
T ss_pred CcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC
Confidence 34467778888999988887755 333321 122344458899999888554 45666654
No 204
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=24.03 E-value=2.5e+02 Score=25.21 Aligned_cols=53 Identities=15% Similarity=0.009 Sum_probs=34.6
Q ss_pred CCCCeEEEEcC--CCCchHHHHHHHHHHcCCCce---EEec---CCHHHHHhCCCCcccCC
Q 017338 155 ENKDGLVVYDG--KGIFSAARVWWMFRVFGHDRV---WVLD---GGLPRWRASGYDVESSA 207 (373)
Q Consensus 155 ~~~~~VVvy~~--~g~~~a~ra~~~L~~~G~~~v---~~L~---GG~~~W~~~g~pv~~~~ 207 (373)
.+++.|++.|+ ..+.....+...|+..|..-+ .++| ||.......|.|+.+-.
T Consensus 116 ~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~~~~~~~l~~~gi~v~sl~ 176 (206)
T PRK13809 116 TPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQKGACQPLGPQGIKLSSVF 176 (206)
T ss_pred CCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECcccHHHHHHhcCCCEEEEE
Confidence 36678888876 223346778889999998532 2566 55555555777777644
No 205
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=23.98 E-value=6.6e+02 Score=24.21 Aligned_cols=89 Identities=17% Similarity=0.173 Sum_probs=54.1
Q ss_pred CCCCcccHHHHHHhcCC---CCeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHH
Q 017338 73 PKEPVVSVDWLHANLRE---PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAV 149 (373)
Q Consensus 73 ~~~~~is~~~l~~~l~~---~~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l 149 (373)
...-.||...+.+++.. ..++.+|.- .. .|.|..++|.+.+.. ...|.+++
T Consensus 108 ~~ge~isak~~a~lL~~~g~d~vitvD~H-----------~~----~i~~~F~~p~~nl~~-----------~p~~~~~l 161 (323)
T PRK02458 108 KPREPITAKLVANMLVKAGVDRVLTLDLH-----------AV----QVQGFFDIPVDNLFT-----------VPLFAKHY 161 (323)
T ss_pred CCCCCchHHHHHHHHhhcCCCeEEEEecC-----------cH----HhhccccCCceEEEE-----------HHHHHHHH
Confidence 44557899988888865 258899982 11 244555667665532 13577777
Q ss_pred HHcCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEec
Q 017338 150 SALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLD 190 (373)
Q Consensus 150 ~~~gi~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~ 190 (373)
...+.+.+..+|+.-+.|. ..++..+.+.+|. .+.+++
T Consensus 162 ~~~~~~~~~~vvV~pd~Ga--~~~A~~la~~L~~-~~~~~~ 199 (323)
T PRK02458 162 CKKGLSGSDVVVVSPKNSG--IKRARSLAEYLDA-PIAIID 199 (323)
T ss_pred HHhCCCCCceEEEEECCCh--HHHHHHHHHHhCC-CEEEEE
Confidence 7766655566666645443 5556666667775 344443
No 206
>PRK12361 hypothetical protein; Provisional
Probab=23.68 E-value=2.1e+02 Score=29.64 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHcC--CCCCCeEEEEcCCCCchHHH--HHHHHH
Q 017338 140 PSEEAFAAAVSALG--LENKDGLVVYDGKGIFSAAR--VWWMFR 179 (373)
Q Consensus 140 ~~~e~~~~~l~~~g--i~~~~~VVvy~~~g~~~a~r--a~~~L~ 179 (373)
|+.++|.+.+..+. +..+.+|+|+|..|..+|+. ++|++.
T Consensus 156 p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~ 199 (547)
T PRK12361 156 PTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLC 199 (547)
T ss_pred CcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHH
Confidence 55667776655543 34567899999987655544 444443
No 207
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=23.38 E-value=1e+02 Score=23.94 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=19.9
Q ss_pred CcEEEEcCCchHHHHHH-----HHHHHcCCC
Q 017338 324 KPVVTACGTGVTACILA-----LGLNRLGKH 349 (373)
Q Consensus 324 ~~IvvyC~~G~ra~~a~-----~~L~~~G~~ 349 (373)
..|++.|++|.-++... .+|+.+|+.
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCC
Confidence 46899999999777544 357888984
No 208
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=23.37 E-value=1.7e+02 Score=27.72 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCCC---CCeEEEEcCCCCchHHHHHHHHHHcCCCceEEecCC
Q 017338 142 EEAFAAAVSALGLEN---KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGG 192 (373)
Q Consensus 142 ~e~~~~~l~~~gi~~---~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~GG 192 (373)
-.-|...|...++.. ++.+++... |+. +..+++.|...|.+++.++|=-
T Consensus 108 ~~G~~~~L~~~~~~~~~~~~~vlilGA-GGA-arAv~~aL~~~g~~~i~V~NRt 159 (283)
T COG0169 108 GIGFLRALKEFGLPVDVTGKRVLILGA-GGA-ARAVAFALAEAGAKRITVVNRT 159 (283)
T ss_pred HHHHHHHHHhcCCCcccCCCEEEEECC-cHH-HHHHHHHHHHcCCCEEEEEeCC
Confidence 345777778766432 466777755 331 4447889999999999999854
No 209
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=23.30 E-value=1.4e+02 Score=31.18 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHH
Q 017338 309 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 359 (373)
Q Consensus 309 ~~l~~~~~~~gi~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~ 359 (373)
+.+.+.+.+. .+.+.|+||.+-..+-.++..|...|+. +..|.||+.
T Consensus 213 ~~l~~~l~~~---~~~~~IIf~~sr~~~e~la~~L~~~g~~-~~~~H~~l~ 259 (591)
T TIGR01389 213 KFLLDYLKKH---RGQSGIIYASSRKKVEELAERLESQGIS-ALAYHAGLS 259 (591)
T ss_pred HHHHHHHHhc---CCCCEEEEECcHHHHHHHHHHHHhCCCC-EEEEECCCC
Confidence 4455555532 2578999999977788888899999984 888888874
No 210
>PTZ00110 helicase; Provisional
Probab=23.22 E-value=1.6e+02 Score=30.62 Aligned_cols=49 Identities=16% Similarity=0.063 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHH
Q 017338 309 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 359 (373)
Q Consensus 309 ~~l~~~~~~~gi~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~ 359 (373)
..|.+++... ......+||||++-..+..++..|+..|+. +..+.|++.
T Consensus 364 ~~L~~ll~~~-~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~-~~~ihg~~~ 412 (545)
T PTZ00110 364 GKLKMLLQRI-MRDGDKILIFVETKKGADFLTKELRLDGWP-ALCIHGDKK 412 (545)
T ss_pred HHHHHHHHHh-cccCCeEEEEecChHHHHHHHHHHHHcCCc-EEEEECCCc
Confidence 4455555543 225678999999988888889999999985 677888763
No 211
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=23.12 E-value=1.2e+02 Score=21.81 Aligned_cols=47 Identities=26% Similarity=0.334 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHcCCCCCCeEEEEcC-CCCchHHHHHHHHHHcCCCceEEecC
Q 017338 139 LPSEEAFAAAVSALGLENKDGLVVYDG-KGIFSAARVWWMFRVFGHDRVWVLDG 191 (373)
Q Consensus 139 l~~~e~~~~~l~~~gi~~~~~VVvy~~-~g~~~a~ra~~~L~~~G~~~v~~L~G 191 (373)
-|++..+...++.++++....++|=|. .... ...+.+|+.-+.+..|
T Consensus 4 KP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di------~~a~~~G~~~ilV~tG 51 (75)
T PF13242_consen 4 KPSPGMLEQALKRLGVDPSRCVMVGDSLETDI------EAAKAAGIDTILVLTG 51 (75)
T ss_dssp TTSHHHHHHHHHHHTSGGGGEEEEESSTTTHH------HHHHHTTSEEEEESSS
T ss_pred CCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHH------HHHHHcCCcEEEECCC
Confidence 377888999999999988887777666 3221 1355789977777775
No 212
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=22.81 E-value=98 Score=25.52 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=26.6
Q ss_pred cEEEEcCCc-hHHHHHHHHHHHcCCC-CceeecccHHHH
Q 017338 325 PVVTACGTG-VTACILALGLNRLGKH-DVAVYDGSWTEW 361 (373)
Q Consensus 325 ~IvvyC~~G-~ra~~a~~~L~~~G~~-~v~~~~GG~~~W 361 (373)
.|++.|.++ .||.++..+|+.+.-. ++.++..|...+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 588889654 4788888888775433 688888887655
No 213
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=22.54 E-value=4.2e+02 Score=21.81 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCeEEEEcC---CCCchHHHHHHHHHHcCCCceEEecCC------HHHHHhCCCC
Q 017338 137 HMLPSEEAFAAAVSALGLENKDGLVVYDG---KGIFSAARVWWMFRVFGHDRVWVLDGG------LPRWRASGYD 202 (373)
Q Consensus 137 ~~l~~~e~~~~~l~~~gi~~~~~VVvy~~---~g~~~a~ra~~~L~~~G~~~v~~L~GG------~~~W~~~g~p 202 (373)
....++++|.+...+ .+..+|+.|. ........+...|+..|..++.++-|| +..|++.|..
T Consensus 37 g~~~s~e~~v~aa~e----~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd 107 (132)
T TIGR00640 37 PLFQTPEEIARQAVE----ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVA 107 (132)
T ss_pred CCCCCHHHHHHHHHH----cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCC
No 214
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=22.43 E-value=1.5e+02 Score=29.35 Aligned_cols=36 Identities=14% Similarity=0.032 Sum_probs=30.6
Q ss_pred CCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccH
Q 017338 322 LEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSW 358 (373)
Q Consensus 322 ~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~ 358 (373)
....+||||++-..+-..+..|...|+ ++..|.|++
T Consensus 254 ~~~~~lVF~~t~~~~~~l~~~L~~~g~-~v~~lhg~~ 289 (423)
T PRK04837 254 WPDRAIIFANTKHRCEEIWGHLAADGH-RVGLLTGDV 289 (423)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhCCC-cEEEecCCC
Confidence 356799999998888888889999998 488898886
No 215
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=22.18 E-value=3.2e+02 Score=23.37 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=16.0
Q ss_pred CCCcEEEEcCCchHHHHHHH
Q 017338 322 LEKPVVTACGTGVTACILAL 341 (373)
Q Consensus 322 ~~~~IvvyC~~G~ra~~a~~ 341 (373)
..+..|+.|++|.-+++++.
T Consensus 58 ~~d~GIliCGTGiG~~iaAN 77 (151)
T COG0698 58 EADLGILICGTGIGMSIAAN 77 (151)
T ss_pred CCCeeEEEecCChhHHHHhh
Confidence 55678999999988777664
No 216
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=21.93 E-value=1e+02 Score=24.49 Aligned_cols=26 Identities=15% Similarity=0.385 Sum_probs=19.6
Q ss_pred CcEEEEcCCchHHHHHHHHH----HHcCCC
Q 017338 324 KPVVTACGTGVTACILALGL----NRLGKH 349 (373)
Q Consensus 324 ~~IvvyC~~G~ra~~a~~~L----~~~G~~ 349 (373)
+.|++.|+.|..++..+.-+ +..|.+
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~ 33 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVP 33 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCC
Confidence 57999999999999877433 446664
No 217
>PRK07514 malonyl-CoA synthase; Validated
Probab=21.91 E-value=1.8e+02 Score=29.07 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchHHHHHHHHHHHcCCC
Q 017338 309 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKH 349 (373)
Q Consensus 309 ~~l~~~~~~~gi~~~~~IvvyC~~G~ra~~a~~~L~~~G~~ 349 (373)
..+...|.+.|+.+++.|.++|..+.....+.+++..+|..
T Consensus 39 ~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~ 79 (504)
T PRK07514 39 ARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAV 79 (504)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence 56777788889999999999999999988888888888974
No 218
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=21.84 E-value=1.4e+02 Score=31.30 Aligned_cols=38 Identities=24% Similarity=0.190 Sum_probs=32.8
Q ss_pred CCCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccH
Q 017338 320 ISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSW 358 (373)
Q Consensus 320 i~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~ 358 (373)
-..+..-|+||.+-..+-..+..|...|+ ++..|.||+
T Consensus 227 ~~~~~~GIIYc~sRk~~E~ia~~L~~~g~-~a~~YHaGl 264 (590)
T COG0514 227 PQLSKSGIIYCLTRKKVEELAEWLRKNGI-SAGAYHAGL 264 (590)
T ss_pred cccCCCeEEEEeeHHhHHHHHHHHHHCCC-ceEEecCCC
Confidence 45667789999998888889999999998 599999998
No 219
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=21.74 E-value=2.5e+02 Score=23.75 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCcEEEEcC--CchH--HHHHHHHHHHcCCCCceeecccH
Q 017338 303 QTLLPADELKKRFEQEGISLEKPVVTACG--TGVT--ACILALGLNRLGKHDVAVYDGSW 358 (373)
Q Consensus 303 ~~~~~~~~l~~~~~~~gi~~~~~IvvyC~--~G~r--a~~a~~~L~~~G~~~v~~~~GG~ 358 (373)
+.+.+++|+.... +..+-.+|..|. .++. ...+...|++.|..++.++-||-
T Consensus 47 g~~~tp~e~v~aA----~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 47 GLFQTPEEAVRAA----VEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred CCcCCHHHHHHHH----HhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCc
Confidence 4566666665544 446778888884 2333 34566779999999999888875
No 220
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=21.42 E-value=2.2e+02 Score=26.84 Aligned_cols=46 Identities=13% Similarity=0.359 Sum_probs=26.2
Q ss_pred HHHHHHHcCCCC-CCcEEEEcCCchHHHHHHHHHHHcCCCCceeeccc
Q 017338 311 LKKRFEQEGISL-EKPVVTACGTGVTACILALGLNRLGKHDVAVYDGS 357 (373)
Q Consensus 311 l~~~~~~~gi~~-~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG 357 (373)
+...+++.+.+. ++.+++. +.|--+..++..|...|+++|.+++-.
T Consensus 113 ~~~~l~~~~~~~~~k~vlI~-GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 113 FVRNLREHGVDVKGKKLTVI-GAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred HHHHHHhcCCCcCCCEEEEE-CCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 333444333333 4445555 445444456667888999878887643
No 221
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=21.28 E-value=1.6e+02 Score=29.65 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=27.4
Q ss_pred CCCCCcEEEEcCCchHHHHHHHHHHHcCCC
Q 017338 320 ISLEKPVVTACGTGVTACILALGLNRLGKH 349 (373)
Q Consensus 320 i~~~~~IvvyC~~G~ra~~a~~~L~~~G~~ 349 (373)
+.+++||++.+.+|..+...-.+|+.+|++
T Consensus 109 ~~~d~Pv~l~~~~~H~~~~Ns~al~~~gi~ 138 (479)
T cd01300 109 VSPDRPVLLLRRDGHSAWVNSAALRLAGIT 138 (479)
T ss_pred ccCCCcEEEEccCchHHHHHHHHHHHcCCC
Confidence 678999999999999998899999999985
No 222
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=20.90 E-value=1.7e+02 Score=29.45 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCCCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHH
Q 017338 310 ELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 359 (373)
Q Consensus 310 ~l~~~~~~~gi~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~ 359 (373)
.+..++.. .....+||||++-..+..++..|...|+ ++..|.|++.
T Consensus 232 ~l~~ll~~---~~~~~~lVF~~t~~~~~~l~~~L~~~~~-~v~~~hg~~~ 277 (460)
T PRK11776 232 ALQRLLLH---HQPESCVVFCNTKKECQEVADALNAQGF-SALALHGDLE 277 (460)
T ss_pred HHHHHHHh---cCCCceEEEECCHHHHHHHHHHHHhCCC-cEEEEeCCCC
Confidence 34444442 2346799999998888899999999998 4888888874
No 223
>PRK10565 putative carbohydrate kinase; Provisional
Probab=20.70 E-value=1.3e+02 Score=31.00 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=23.9
Q ss_pred CCCCcEEEEcCCch---HHHHHHHHHHHcCCCCceee
Q 017338 321 SLEKPVVTACGTGV---TACILALGLNRLGKHDVAVY 354 (373)
Q Consensus 321 ~~~~~IvvyC~~G~---ra~~a~~~L~~~G~~~v~~~ 354 (373)
...++|+|.|+.|+ .+..++..|...||+ |.+|
T Consensus 58 ~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 58 PDARHWLVLCGHGNNGGDGYVVARLAQAAGID-VTLL 93 (508)
T ss_pred CCCCeEEEEEcCCCchHHHHHHHHHHHHCCCc-eEEE
Confidence 34567999998765 455677778888984 7666
No 224
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=20.54 E-value=1.3e+02 Score=26.80 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=26.0
Q ss_pred CCCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeec
Q 017338 320 ISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYD 355 (373)
Q Consensus 320 i~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~ 355 (373)
+..+.+|.+...+|..|+.++.++...+..++..+.
T Consensus 14 l~~~~~i~~~LSGGlDSs~i~~~~~~~~~~~~~~~t 49 (255)
T PF00733_consen 14 LRSDKPIGILLSGGLDSSAIAALAARQGGPPIKTFT 49 (255)
T ss_dssp CGCTSEEEEE--SSHHHHHHHHHHHHTCCSEEEEEE
T ss_pred HhcCCCEEEECCCChhHHHHHHHHHHhhCCceeEEE
Confidence 567899999999999999998888884334565543
No 225
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=20.44 E-value=1.3e+02 Score=24.71 Aligned_cols=33 Identities=9% Similarity=0.049 Sum_probs=16.6
Q ss_pred EEEEcCCc-hHHHHHHHHHHHcCCCCceeecccH
Q 017338 326 VVTACGTG-VTACILALGLNRLGKHDVAVYDGSW 358 (373)
Q Consensus 326 IvvyC~~G-~ra~~a~~~L~~~G~~~v~~~~GG~ 358 (373)
|+|.|.++ .||.++-.+++.+.-.++.++..|.
T Consensus 1 iLFvC~~N~~RS~mAea~~~~~~~~~~~v~SaG~ 34 (129)
T TIGR02691 1 IYFLCTGNSCRSQMAEGWGKKYLGDEWEVYSAGI 34 (129)
T ss_pred CEEEcCCchHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 35566433 3555555555543223455566655
No 226
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=20.43 E-value=5.6e+02 Score=24.70 Aligned_cols=88 Identities=18% Similarity=0.190 Sum_probs=61.2
Q ss_pred CCCCcccHHHHHHhcCCC---CeEEEEeecCCCCCCCCChhhhhhCCCcCceecCcccccccCCCCCCCCCCHHHHHHHH
Q 017338 73 PKEPVVSVDWLHANLREP---DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAV 149 (373)
Q Consensus 73 ~~~~~is~~~l~~~l~~~---~~~iiDvR~~~~~~~r~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~l~~~e~~~~~l 149 (373)
.+.-.||+.-+.+++..- .++-+|.- ...|.|-..+|.+.+.. ...|.+++
T Consensus 103 ~~repIsaklvA~lL~~aG~drv~TvDlH---------------~~qiqgfFdipvdnl~a-----------~p~l~~~~ 156 (314)
T COG0462 103 KPREPISAKLVANLLETAGADRVLTVDLH---------------APQIQGFFDIPVDNLYA-----------APLLAEYI 156 (314)
T ss_pred CCCCCEeHHHHHHHHHHcCCCeEEEEcCC---------------chhhcccCCCccccccc-----------hHHHHHHH
Confidence 445569999888888652 47788872 23477888889988653 34677788
Q ss_pred HHcCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCCceEEec
Q 017338 150 SALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLD 190 (373)
Q Consensus 150 ~~~gi~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~~v~~L~ 190 (373)
.... ..+..||+--+.|+ ..|+-.+...+|.. ..+++
T Consensus 157 ~~~~-~~~d~vVVSPD~Gg--v~RAr~~A~~L~~~-~a~i~ 193 (314)
T COG0462 157 REKY-DLDDPVVVSPDKGG--VKRARALADRLGAP-LAIID 193 (314)
T ss_pred HHhc-CCCCcEEECCCccH--HHHHHHHHHHhCCC-EEEEE
Confidence 8776 44447777766565 66777778888875 66665
No 227
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=20.38 E-value=2.9e+02 Score=22.61 Aligned_cols=46 Identities=28% Similarity=0.485 Sum_probs=26.9
Q ss_pred HHHHHHHcCCCC-CCcEEEEcCCchHHHHHHHHHHHcCCCCceeeccc
Q 017338 311 LKKRFEQEGISL-EKPVVTACGTGVTACILALGLNRLGKHDVAVYDGS 357 (373)
Q Consensus 311 l~~~~~~~gi~~-~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG 357 (373)
+.+.++..+++. ++.|++. +.|.-+...+..|...|..+|.+++-.
T Consensus 6 ~~~a~~~~~~~~~~~~i~ii-G~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 6 FVRALEEAGIELKGKKVLIL-GAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred HHHHHHhhCCCCCCCEEEEE-CCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 444455555533 3455555 446666666677777765567777654
No 228
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=20.37 E-value=2e+02 Score=29.75 Aligned_cols=50 Identities=28% Similarity=0.250 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchHHHHHHHHHHHcCCCCceeecccHH
Q 017338 309 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 359 (373)
Q Consensus 309 ~~l~~~~~~~gi~~~~~IvvyC~~G~ra~~a~~~L~~~G~~~v~~~~GG~~ 359 (373)
..|.+++.+..-.++.+|||+|.+=..+..+...|+..|| ++..+.|...
T Consensus 327 ~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~-~a~~iHGd~s 376 (519)
T KOG0331|consen 327 RKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGW-PAVAIHGDKS 376 (519)
T ss_pred HHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCc-ceeeeccccc
Confidence 3445555544334556899999998889999999999998 4778888764
No 229
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=20.22 E-value=1.5e+02 Score=28.40 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCCCCCcEEEEcCCchHHHHHHHHHHHcCCC-CceeecccH
Q 017338 309 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKH-DVAVYDGSW 358 (373)
Q Consensus 309 ~~l~~~~~~~gi~~~~~IvvyC~~G~ra~~a~~~L~~~G~~-~v~~~~GG~ 358 (373)
+.+.+++.. +..+.+++++|++-..+..++..|+..+.. ++..|.|++
T Consensus 210 ~~l~~l~~~--~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~ 258 (358)
T TIGR01587 210 SSLERLLEF--IKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRF 258 (358)
T ss_pred HHHHHHHHH--hhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCC
Confidence 445555542 345689999999977888888889887764 688999986
No 230
>TIGR03089 conserved hypothetical protein TIGR03089. This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=20.18 E-value=2.3e+02 Score=25.49 Aligned_cols=40 Identities=8% Similarity=-0.031 Sum_probs=32.4
Q ss_pred HHHHHHHHH-cCCCCCCcEEEEcCCchHHHHHHHHHHHcCC
Q 017338 309 DELKKRFEQ-EGISLEKPVVTACGTGVTACILALGLNRLGK 348 (373)
Q Consensus 309 ~~l~~~~~~-~gi~~~~~IvvyC~~G~ra~~a~~~L~~~G~ 348 (373)
..+.+.|.+ .|+.++++|.++|..+..-...++.....|.
T Consensus 38 ~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~ 78 (227)
T TIGR03089 38 AKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV 78 (227)
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 567777877 6999999999999988877777777777774
No 231
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=20.05 E-value=1.8e+02 Score=21.24 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=24.8
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHHcCCC
Q 017338 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHD 184 (373)
Q Consensus 155 ~~~~~VVvy~~~g~~~a~ra~~~L~~~G~~ 184 (373)
..+..|++|...++..-.++-..|...|++
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~ 34 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEKGYD 34 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHcCCC
Confidence 456779999888888788888899999985
Done!