BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017340
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 99/246 (40%), Gaps = 52/246 (21%)
Query: 133 PSNTRFQELNSEPVIPDGFPEWK-------ETMDSWGHKMISAIEVVAEMAAIGFGLPKD 185
P RF+ ++ V P P +K ++D G K++ AI A L +D
Sbjct: 106 PPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXGGKVLEAI-------ATYLKLERD 158
Query: 186 AFTSLMKQGPHLLAPTGCDLRRYG---KEGT-VFAGYHYDLNFLTIHGRSRFPGLNIWLR 241
F ++ G +L L Y K+ T V AG H D+N +T+ + GL + R
Sbjct: 159 FFKPTVQDGNSVLR-----LLHYPPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDR 213
Query: 242 NGKKVEVKVPVGCLLIQTGKQASWELFLVQFLADSGFCLIEWLTAGDCLAGMHEVIVTSR 301
+G+ + + P GCL+I G +E LT + +H V+
Sbjct: 214 DGQWLPINPPPGCLVINIGDX------------------LERLTNNVLPSTVHRVV---- 251
Query: 302 TIDAIKQASEHNRSLWRVSSTLFAHIASDAVLKPLGHFAESPLSRKYP-PICAGEFVEQE 360
R + R S+ F H ASD +K L + + +YP I A EF++Q
Sbjct: 252 ------NPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQR 305
Query: 361 LAVINL 366
L I L
Sbjct: 306 LREIKL 311
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 212 GTVFAGYHYDLNFLTIHGRSRFPGLNIWLRNGKKVEVKVPVGCLLIQTG 260
G + A H D+N +T+ + PGL + ++G ++V G ++I G
Sbjct: 167 GAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIG 215
>pdb|3HR6|A Chain A, Structure Of The Corynebacterium Diphtheriae Major Pilin
Spaa Points To A Modular Pilus Assembly Stabilizing
Isopeptide Bonds
Length = 436
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 108 PKESQPSIPIGPDPKWRYMWRVGPRPSNTRFQELNSEPVIPD--GFPEWKETMDSWGHKM 165
P +QP +G + K+R ++ SNT+F+ +P G P+ + + G K
Sbjct: 154 PDATQPGFSVGENVKYRVATKIPEIASNTKFEGFTVADKLPAELGKPDTNKITVTLGGKP 213
Query: 166 ISAIEVVAEMAAIG 179
I++ +V + +G
Sbjct: 214 INSTDVSVQTYQVG 227
>pdb|3HTL|X Chain X, Structure Of The Corynebacterium Diphtheriae Major Pilin
Spaa Points To A Modular Pilus Assembly With Stabilizing
Isopeptide Bonds
Length = 436
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 108 PKESQPSIPIGPDPKWRYMWRVGPRPSNTRFQELNSEPVIPD--GFPEWKETMDSWGHKM 165
P +QP +G + K+R ++ SNT+F+ +P G P+ + + G K
Sbjct: 154 PDATQPGFSVGENVKYRVATKIPEIASNTKFEGFTVADKLPAELGKPDTNKITVTLGGKP 213
Query: 166 ISAIEVVAEMAAIG 179
I++ +V + +G
Sbjct: 214 INSTDVSVQTYQVG 227
>pdb|2DIK|A Chain A, R337a Mutant Of Pyruvate Phosphate Dikinase
Length = 873
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 19/106 (17%)
Query: 30 VSGILRETGALLVKDPRCTVEDNDRFLDMM-EKYFESP-FHFKR----LQERPNLHYQVG 83
V G ++TG +PR + RF+ M + E P HF++ ++E +H+
Sbjct: 115 VEGFAKKTG-----NPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDTD 169
Query: 84 VTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDPKWRYMWRV 129
+T + ++ E+ EKF+A+ KE+ +PK + M V
Sbjct: 170 LTADDLK--------ELAEKFKAVYKEAMNGEEFPQEPKDQLMGAV 207
>pdb|1DIK|A Chain A, Pyruvate Phosphate Dikinase
Length = 874
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 19/106 (17%)
Query: 30 VSGILRETGALLVKDPRCTVEDNDRFLDMM-EKYFESP-FHFKR----LQERPNLHYQVG 83
V G ++TG +PR + RF+ M + E P HF++ ++E +H+
Sbjct: 116 VEGFAKKTG-----NPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDTD 170
Query: 84 VTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDPKWRYMWRV 129
+T + ++ E+ EKF+A+ KE+ +PK + M V
Sbjct: 171 LTADDLK--------ELAEKFKAVYKEAMNGEEFPQEPKDQLMGAV 208
>pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 19/106 (17%)
Query: 30 VSGILRETGALLVKDPRCTVEDNDRFLDMM-EKYFESP-FHFKR----LQERPNLHYQVG 83
V G ++TG +PR + RF+ M + E P HF++ ++E +H+
Sbjct: 115 VEGFAKKTG-----NPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDTD 169
Query: 84 VTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDPKWRYMWRV 129
+T + ++ E+ EKF+A+ KE+ +PK + M V
Sbjct: 170 LTADDLK--------ELAEKFKAVYKEAMNGEEFPQEPKDQLMGAV 207
>pdb|2R82|A Chain A, Pyruvate Phosphate Dikinase (Ppdk) Triple Mutant
R219eE271RS262D Adapts A Second Conformational State
Length = 874
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 19/106 (17%)
Query: 30 VSGILRETGALLVKDPRCTVEDNDRFLDMM-EKYFESP-FHFKR----LQERPNLHYQVG 83
V G ++TG +PR + RF+ M + E P HF++ ++E +H+
Sbjct: 116 VEGFAKKTG-----NPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDTD 170
Query: 84 VTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDPKWRYMWRV 129
+T + ++ E+ EKF+A+ KE+ +PK + M V
Sbjct: 171 LTADDLK--------ELAEKFKAVYKEAMNGEEFPQEPKDQLMGAV 208
>pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 19/106 (17%)
Query: 30 VSGILRETGALLVKDPRCTVEDNDRFLDMM-EKYFESP-FHFKR----LQERPNLHYQVG 83
V G ++TG +PR + RF+ M + E P HF++ ++E +H+
Sbjct: 115 VEGFAKKTG-----NPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDTD 169
Query: 84 VTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDPKWRYMWRV 129
+T + ++ E+ EKF+A+ KE+ +PK + M V
Sbjct: 170 LTADDLK--------ELAEKFKAVYKEAMNGEEFPQEPKDQLMGAV 207
>pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase
pdb|1KC7|A Chain A, Pyruvate Phosphate Dikinase With Bound
Mg-Phosphonopyruvate
Length = 873
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 19/106 (17%)
Query: 30 VSGILRETGALLVKDPRCTVEDNDRFLDMM-EKYFESP-FHFKR----LQERPNLHYQVG 83
V G ++TG +PR + RF+ M + E P HF++ ++E +H+
Sbjct: 115 VEGFAKKTG-----NPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDTD 169
Query: 84 VTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDPKWRYMWRV 129
+T + ++ E+ EKF+A+ KE+ +PK + M V
Sbjct: 170 LTADDLK--------ELAEKFKAVYKEAMNGEEFPQEPKDQLMGAV 207
>pdb|2QW7|A Chain A, Carboxysome Subunit, Ccml
pdb|2QW7|B Chain B, Carboxysome Subunit, Ccml
pdb|2QW7|C Chain C, Carboxysome Subunit, Ccml
pdb|2QW7|D Chain D, Carboxysome Subunit, Ccml
pdb|2QW7|E Chain E, Carboxysome Subunit, Ccml
pdb|2QW7|F Chain F, Carboxysome Subunit, Ccml
pdb|2QW7|G Chain G, Carboxysome Subunit, Ccml
pdb|2QW7|H Chain H, Carboxysome Subunit, Ccml
pdb|2QW7|I Chain I, Carboxysome Subunit, Ccml
pdb|2QW7|J Chain J, Carboxysome Subunit, Ccml
Length = 111
Score = 29.6 bits (65), Expect = 2.6, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 266 ELFLVQFLADSGFCLIEWLTAGDCL-AGMHEVIVTSRTIDAIKQASEHNRSL 316
+L LVQFL G L + AGD + AG++E ++ +R A K+ +R L
Sbjct: 23 KLLLVQFLDTKGQPLERYEVAGDVVGAGLNEWVLVARGSAARKERGNGDRPL 74
>pdb|2YUI|A Chain A, Solution Structure Of The N-Terminal Domain In Human
Cytokine-Induced Apoptosis Inhibitor Anamorsin
Length = 182
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 12/101 (11%)
Query: 26 LCREVSGILRETGALLVKDPRCTVEDNDRFLDMMEKY-----FESPFHFKRLQERPNLHY 80
+ E++ ILR G L +K+P T DN+ + K K LQ P
Sbjct: 86 ILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGLVEVKELQREP---- 141
Query: 81 QVGVTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDP 121
+TPE V+ R + E +P+ +G P
Sbjct: 142 ---LTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGSGP 179
>pdb|3ZGB|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGB|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 972
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 66 PFHFKRLQERPN-LHYQVGVTPEGVEIPRSLVDEEM----QEKFRAMPKESQPSIPIGPD 120
P H L + P+ +H + VT +G I +S +E + ++F A E + PI P
Sbjct: 651 PTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPR 710
Query: 121 PKWR 124
P+WR
Sbjct: 711 PEWR 714
>pdb|3ZNU|A Chain A, Crystal Structure Of Clcf In Crystal Form 2
pdb|3ZNU|B Chain B, Crystal Structure Of Clcf In Crystal Form 2
pdb|3ZNU|C Chain C, Crystal Structure Of Clcf In Crystal Form 2
pdb|3ZNU|D Chain D, Crystal Structure Of Clcf In Crystal Form 2
pdb|3ZNU|E Chain E, Crystal Structure Of Clcf In Crystal Form 2
pdb|3ZNU|F Chain F, Crystal Structure Of Clcf In Crystal Form 2
pdb|3ZNU|G Chain G, Crystal Structure Of Clcf In Crystal Form 2
pdb|3ZNU|H Chain H, Crystal Structure Of Clcf In Crystal Form 2
pdb|3ZNU|I Chain I, Crystal Structure Of Clcf In Crystal Form 2
pdb|3ZNU|J Chain J, Crystal Structure Of Clcf In Crystal Form 2
Length = 94
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 89 VEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDPKWRYMWRVGPRPSNTRFQELNS 143
V +PR+L D +E+ +A E S + +WRY+WR + N ++NS
Sbjct: 9 VNLPRNL-DPREEERLKA--SEKARSRTLQEQGQWRYLWRTTGKYGNISVFDVNS 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,728,816
Number of Sequences: 62578
Number of extensions: 502972
Number of successful extensions: 1169
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1166
Number of HSP's gapped (non-prelim): 16
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)