BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017340
         (373 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B2V844|LEUC_SULSY 3-isopropylmalate dehydratase large subunit OS=Sulfurihydrogenibium
           sp. (strain YO3AOP1) GN=leuC PE=3 SV=1
          Length = 431

 Score = 37.0 bits (84), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 216 AGYHYDLNFLTIHGRSRFPGLNIWLRNGKKVEVKVPVGCLLI----QTGKQASWELFLVQ 271
           AG H D  F+      R   L I     K  +V   V C++I    Q  KQA  E  +++
Sbjct: 288 AGTHIDQVFIGSCTNGRLSDLRIAAAILKSKKVHPEVRCIVIPASDQIYKQALHE-GIIE 346

Query: 272 FLADSGFCLIEWLTAGDCLAG 292
            LAD+G CLI   T G CL G
Sbjct: 347 ILADAG-CLISTSTCGPCLGG 366


>sp|Q8UF86|UVRA_AGRT5 UvrABC system protein A OS=Agrobacterium tumefaciens (strain C58 /
           ATCC 33970) GN=uvrA PE=3 SV=2
          Length = 973

 Score = 34.3 bits (77), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 99  EMQEKFRAMPKESQPSIPIGPDPKWRYMWRVGPRPSNTRFQELNSEPVIPDGFPEWKETM 158
           ++  K+  + KE+Q +I  G D K  + ++ G R   T     N E ++P+    WKET 
Sbjct: 353 KLSSKWTDLSKEAQHAILQGTDDKIEFNYQDGARSYKT---VKNFEGIVPNLERRWKETD 409

Query: 159 DSWGHKMI 166
            +W  + I
Sbjct: 410 SAWAREEI 417


>sp|O09102|GCM2_MOUSE Chorion-specific transcription factor GCMb OS=Mus musculus GN=Gcm2
           PE=2 SV=2
          Length = 504

 Score = 33.1 bits (74), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 191 MKQGPHL-LAPTGCDLRRYGKEGTVFAGYHYDLNFLTIHGRSRFPGLNIWLRNGKKV 246
           +K G HL L P  CD  R  ++       H  L  +   G S +P  N W  +G  +
Sbjct: 93  LKDGSHLQLRPAICDKARLKQQKKACPNCHSPLELVPCRGHSGYPVTNFWRLDGNAI 149


>sp|Q55DJ9|IRLD_DICDI Probable serine/threonine-protein kinase irlD OS=Dictyostelium
           discoideum GN=irlD PE=3 SV=1
          Length = 1505

 Score = 31.6 bits (70), Expect = 9.0,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 29  EVSGILRETGALLVKDPRCTVEDNDRFLDMMEKYFESPFHFKRLQERP 76
           ++S I R+ G L++K P  T+ + + FL+    YF    H   L E P
Sbjct: 75  KISDISRDLGILILKLPNRTIRELELFLESKNIYFREDQHINYLNEIP 122


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.137    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,829,625
Number of Sequences: 539616
Number of extensions: 6639850
Number of successful extensions: 14647
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 14644
Number of HSP's gapped (non-prelim): 6
length of query: 373
length of database: 191,569,459
effective HSP length: 119
effective length of query: 254
effective length of database: 127,355,155
effective search space: 32348209370
effective search space used: 32348209370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)