BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017343
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCA|A Chain A, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Bacillus Anthracis Str. Ames
Length = 525
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 249 KTNGATMLNLSLLTSDMWAVLIRIGAYHEKVDWLY 283
K N ++LNL LT+D W +G H++ WL+
Sbjct: 231 KGNLESVLNLEELTNDGWGPWHEVGHQHQQDTWLW 265
>pdb|2VPW|A Chain A, Polysulfide Reductase With Bound Menaquinone
pdb|2VPW|E Chain E, Polysulfide Reductase With Bound Menaquinone
pdb|2VPX|A Chain A, Polysulfide Reductase With Bound Quinone (uq1)
pdb|2VPX|E Chain E, Polysulfide Reductase With Bound Quinone (uq1)
pdb|2VPY|A Chain A, Polysulfide Reductase With Bound Quinone Inhibitor,
Pentachlorophenol (Pcp)
pdb|2VPY|E Chain E, Polysulfide Reductase With Bound Quinone Inhibitor,
Pentachlorophenol (Pcp)
pdb|2VPZ|A Chain A, Polysulfide Reductase Native Structure
pdb|2VPZ|E Chain E, Polysulfide Reductase Native Structure
Length = 765
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 227 ALPFFGYALAMFLFYSFVPILLKTNGATMLNLSLLTSD-----MWAVLIRIGAYHEKVDW 281
A+ FFG+ + F F+P + A ++SL T+ W IG HE +DW
Sbjct: 139 AIAFFGHGTGDYWFVDFLPAAWGSPNAAKPSVSLCTAPREVASQWVFGRPIGG-HEPIDW 197
>pdb|1G6K|A Chain A, Crystal Structure Of Glucose Dehydrogenase Mutant E96a
Complexed With Nad+
pdb|1G6K|B Chain B, Crystal Structure Of Glucose Dehydrogenase Mutant E96a
Complexed With Nad+
pdb|1G6K|E Chain E, Crystal Structure Of Glucose Dehydrogenase Mutant E96a
Complexed With Nad+
pdb|1G6K|F Chain F, Crystal Structure Of Glucose Dehydrogenase Mutant E96a
Complexed With Nad+
Length = 261
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 203 IISAVQISILERKELQSIHWSAGAALPFFGYALAMFLFYSFVPILLKTN--GATMLNLSL 260
+I+ VQ +I E +L + +AG A P + +++ + + L G+
Sbjct: 72 VINLVQSAIKEFGKLDVMINNAGLANPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYF 131
Query: 261 LTSDMWAVLIRIGAYHEKVDWLYFIAFAAVAVGL 294
+ +D+ +I + + HEK+ W F+ +AA G+
Sbjct: 132 VENDIKGTVINMSSVHEKIPWPLFVHYAASKGGM 165
>pdb|1GCO|A Chain A, Crystal Structure Of Glucose Dehydrogenase Complexed With
Nad+
pdb|1GCO|B Chain B, Crystal Structure Of Glucose Dehydrogenase Complexed With
Nad+
pdb|1GCO|E Chain E, Crystal Structure Of Glucose Dehydrogenase Complexed With
Nad+
pdb|1GCO|F Chain F, Crystal Structure Of Glucose Dehydrogenase Complexed With
Nad+
Length = 261
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 260 LLTSDMWAVLIRIGAYHEKVDWLYFIAFAAVAVGL 294
+ +D+ +I + + HEK+ W F+ +AA G+
Sbjct: 131 FVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGM 165
>pdb|1GEE|A Chain A, Crystal Structure Of Glucose Dehydrogenase Mutant Q252l
Complexed With Nad+
pdb|1GEE|B Chain B, Crystal Structure Of Glucose Dehydrogenase Mutant Q252l
Complexed With Nad+
pdb|1GEE|E Chain E, Crystal Structure Of Glucose Dehydrogenase Mutant Q252l
Complexed With Nad+
pdb|1GEE|F Chain F, Crystal Structure Of Glucose Dehydrogenase Mutant Q252l
Complexed With Nad+
Length = 261
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 260 LLTSDMWAVLIRIGAYHEKVDWLYFIAFAAVAVGL 294
+ +D+ +I + + HEK+ W F+ +AA G+
Sbjct: 131 FVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGM 165
>pdb|1RWB|A Chain A, Cooperative Effect Of Two Surface Amino Acid Mutations
(Q252l And E170k) Of Glucose Dehydrogenase From Bacillus
Megaterium Iwg3 For The Stabilization Of Oligomeric
State
pdb|1RWB|B Chain B, Cooperative Effect Of Two Surface Amino Acid Mutations
(Q252l And E170k) Of Glucose Dehydrogenase From Bacillus
Megaterium Iwg3 For The Stabilization Of Oligomeric
State
pdb|1RWB|E Chain E, Cooperative Effect Of Two Surface Amino Acid Mutations
(Q252l And E170k) Of Glucose Dehydrogenase From Bacillus
Megaterium Iwg3 For The Stabilization Of Oligomeric
State
pdb|1RWB|F Chain F, Cooperative Effect Of Two Surface Amino Acid Mutations
(Q252l And E170k) Of Glucose Dehydrogenase From Bacillus
Megaterium Iwg3 For The Stabilization Of Oligomeric
State
Length = 261
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 260 LLTSDMWAVLIRIGAYHEKVDWLYFIAFAAVAVGL 294
+ +D+ +I + + HEK+ W F+ +AA G+
Sbjct: 131 FVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGM 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,933,491
Number of Sequences: 62578
Number of extensions: 376955
Number of successful extensions: 625
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 7
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)