Query 017343
Match_columns 373
No_of_seqs 243 out of 2119
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 12:54:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.7 2.5E-08 8.4E-13 77.8 7.5 68 230-301 37-105 (137)
2 3b5d_A Multidrug transporter E 98.4 6.4E-06 2.2E-10 61.8 13.1 60 242-301 45-105 (110)
3 3b5d_A Multidrug transporter E 98.3 1.7E-06 5.6E-11 65.1 7.1 69 80-148 35-105 (110)
4 2i68_A Protein EMRE; transmemb 98.2 8.4E-07 2.9E-11 69.1 3.5 69 80-148 35-105 (137)
5 3rko_J NADH-quinone oxidoreduc 38.0 21 0.00072 28.6 2.9 33 269-301 128-162 (184)
6 3b9w_A Ammonium transporter fa 34.4 2.3E+02 0.008 25.7 9.6 41 249-290 289-329 (407)
7 3l1l_A Arginine/agmatine antip 34.0 60 0.002 29.6 5.9 21 282-302 409-429 (445)
8 2ks1_B Epidermal growth factor 20.2 48 0.0016 19.6 1.5 13 289-301 26-38 (44)
9 2l2t_A Receptor tyrosine-prote 18.9 53 0.0018 19.4 1.5 13 289-301 25-37 (44)
10 2zxe_G FXYD10, phospholemman-l 18.4 46 0.0016 22.0 1.2 17 285-301 26-42 (74)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.73 E-value=2.5e-08 Score=77.81 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhheeecCC
Q 017343 230 FFGYALAMFLFYSFVPILLKTNGATMLNLS-LLTSDMWAVLIRIGAYHEKVDWLYFIAFAAVAVGLIIYSGGD 301 (373)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 301 (373)
+++.+++++++ ..++++.+...+..+ ..+.|+++.++++++|||++++.+++|+++|++|+++.+..+
T Consensus 37 i~~~~ls~~l~----~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 37 IICYCASFWLL----AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHH----HHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHH----HHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34444444444 455588999988877 789999999999999999999999999999999999987543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.42 E-value=6.4e-06 Score=61.81 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=51.7
Q ss_pred HHHHHHHhhcchhHHHHH-HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhheeecCC
Q 017343 242 SFVPILLKTNGATMLNLS-LLTSDMWAVLIRIGAYHEKVDWLYFIAFAAVAVGLIIYSGGD 301 (373)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~-~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 301 (373)
.+....+++.+...+... ..+.|+++.+++++++||+++..+++|.++|+.|+++.+..+
T Consensus 45 ~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 334445688998888777 788999999999999999999999999999999999987643
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.30 E-value=1.7e-06 Score=65.05 Aligned_cols=69 Identities=16% Similarity=0.296 Sum_probs=60.1
Q ss_pred HHHHHH-HHHHHHHHHHhccchhHHHHh-hcchhhHHHHHHHHHhccccceeeeehhhhheecceeeeecc
Q 017343 80 LGLIDV-EGNFLVVKAYQYTSLTSVMLL-DCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSD 148 (373)
Q Consensus 80 ~g~~~~-~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~l~~~~~ 148 (373)
.+++.. ...+++..++++.|.+.+..+ ..+.|+++++++++++||++++.+++|+.++++|++++...+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 444443 447778899999999999998 799999999999999999999999999999999999987643
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.19 E-value=8.4e-07 Score=69.10 Aligned_cols=69 Identities=16% Similarity=0.282 Sum_probs=49.3
Q ss_pred HHHHHHHH-HHHHHHHHhccchhHHHHh-hcchhhHHHHHHHHHhccccceeeeehhhhheecceeeeecc
Q 017343 80 LGLIDVEG-NFLVVKAYQYTSLTSVMLL-DCWTIPCVMFLTWIFLKTKYRYKKITGVVVCVAGLVTVIFSD 148 (373)
Q Consensus 80 ~g~~~~~~-~~~~~~al~~~~~~~~~~i-~~~~p~~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~l~~~~~ 148 (373)
.+++.... .++++.++++.+++.+..+ .++.|++++++++++++|++++.+++|++++++|++++...+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44444444 7888899999999999998 899999999999999999999999999999999999987643
No 5
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=37.97 E-value=21 Score=28.64 Aligned_cols=33 Identities=12% Similarity=0.025 Sum_probs=23.4
Q ss_pred HHHHHHhcccccHHHHHHHHHHH--HHhheeecCC
Q 017343 269 LIRIGAYHEKVDWLYFIAFAAVA--VGLIIYSGGD 301 (373)
Q Consensus 269 l~~~~~~~e~~~~~~~~G~~li~--~g~~l~~~~~ 301 (373)
-+|..++++-+=+.+.++.++.+ +|.+...+++
T Consensus 128 ~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr~ 162 (184)
T 3rko_J 128 AVGITLFGPYVLAVELASMLLLAGLVVAFHVGREE 162 (184)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57788899998889999987654 3555554433
No 6
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=34.43 E-value=2.3e+02 Score=25.71 Aligned_cols=41 Identities=7% Similarity=-0.123 Sum_probs=20.2
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Q 017343 249 KTNGATMLNLSLLTSDMWAVLIRIGAYHEKVDWLYFIAFAAV 290 (373)
Q Consensus 249 ~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li 290 (373)
+.-++.-+--+-..-=+++.+...+ +....+..|++|.+.+
T Consensus 289 ~iDD~l~a~~vHgv~Gi~G~l~~gl-fa~~~~~~Ql~g~~~~ 329 (407)
T 3b9w_A 289 KTIDTCGVHNLHGLPGLLGGFSAIL-IVPGIAVAQLTGIGIT 329 (407)
T ss_dssp CCCCTTCHHHHTTHHHHHHHHHHHH-HSTTCHHHHHHHHHHH
T ss_pred CCCCCCCCeecchHHHHHHHHHHHH-HccCCcHHHHHHHHHH
Confidence 3344443333333334555555544 3333345688887665
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=33.99 E-value=60 Score=29.56 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhheeecCCC
Q 017343 282 LYFIAFAAVAVGLIIYSGGDK 302 (373)
Q Consensus 282 ~~~~G~~li~~g~~l~~~~~~ 302 (373)
..+.|.++++.|+.+|...++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~ 429 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYN 429 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 345678888888887765443
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=20.21 E-value=48 Score=19.57 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=5.3
Q ss_pred HHHHHhheeecCC
Q 017343 289 AVAVGLIIYSGGD 301 (373)
Q Consensus 289 li~~g~~l~~~~~ 301 (373)
++..+.+++.+++
T Consensus 26 ii~~~~~~~~RRr 38 (44)
T 2ks1_B 26 VVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 3344444444333
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=18.90 E-value=53 Score=19.39 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=5.4
Q ss_pred HHHHHhheeecCC
Q 017343 289 AVAVGLIIYSGGD 301 (373)
Q Consensus 289 li~~g~~l~~~~~ 301 (373)
++..+.+++.+++
T Consensus 25 ii~~~~~~~~RRR 37 (44)
T 2l2t_A 25 IVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 3444444444433
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=18.37 E-value=46 Score=21.97 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=9.0
Q ss_pred HHHHHHHHHhheeecCC
Q 017343 285 IAFAAVAVGLIIYSGGD 301 (373)
Q Consensus 285 ~G~~li~~g~~l~~~~~ 301 (373)
+++++.++|+++...++
T Consensus 26 fA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 26 VAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHcCc
Confidence 34555566666554433
Done!