Query 017343
Match_columns 373
No_of_seqs 243 out of 2119
Neff 9.8
Searched_HMMs 13730
Date Mon Mar 25 12:54:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017343.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017343hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 37.5 17 0.0012 17.0 2.6 19 161-179 2-20 (27)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 9.7 79 0.0057 24.6 2.6 54 76-133 4-57 (248)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 8.6 4.4E+02 0.032 20.7 14.8 41 162-203 61-101 (447)
4 d1pv7a_ f.38.1.2 (A:) Lactose 5.7 5.6E+02 0.041 19.3 16.9 42 7-48 4-46 (417)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 5.4 1.9E+02 0.014 13.5 3.7 16 265-280 13-28 (30)
6 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.8 6.4E+02 0.046 18.9 6.7 35 71-105 49-87 (248)
7 d1l7va_ f.22.1.1 (A:) ABC tran 4.0 4.4E+02 0.032 20.8 4.4 18 1-18 1-18 (324)
8 d1iwga8 f.35.1.1 (A:513-566,A: 4.0 6.8E+02 0.05 18.0 9.8 28 266-293 96-123 (222)
9 d2axtl1 f.23.31.1 (L:1-37) Pho 3.7 3.1E+02 0.023 13.7 2.7 18 161-178 18-35 (37)
10 d1oedb_ f.36.1.1 (B:) Acetylch 2.8 1.4E+02 0.01 22.5 0.0 73 300-372 142-214 (250)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=37.47 E-value=17 Score=17.03 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=15.0
Q ss_pred chhhHHHHHHHHHHHHHHH
Q 017343 161 RKGDALVIAGATLYAVSNV 179 (373)
Q Consensus 161 ~~G~~l~l~a~~~~a~~~v 179 (373)
.+|.+.+-+++++|+.|.-
T Consensus 2 vlgli~~tl~glf~aayqq 20 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 3688888888999888764
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=9.72 E-value=79 Score=24.60 Aligned_cols=54 Identities=20% Similarity=0.179 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHhhcchhhHHHHHHHHHhccccceeeeeh
Q 017343 76 YYLILGLIDVEGNFLVVKAYQYTSLTSVMLLDCWTIPCVMFLTWIFLKTKYRYKKITG 133 (373)
Q Consensus 76 ~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~ll~~~~l~e~~~~~~~~~ 133 (373)
+++++|+++.+..++....+..-+...+.+ ..+.+.++.++++.+|.-+.|++-
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~~----~~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAIT----TLILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHHH----HHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHH----HHHHHHheEEEEEccCccceehhh
Confidence 345666666666555555555444444333 334455666777777776666643
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=8.60 E-value=4.4e+02 Score=20.70 Aligned_cols=41 Identities=12% Similarity=0.010 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 017343 162 KGDALVIAGATLYAVSNVSEEFLVKKADRIELMAFLGLFGGI 203 (373)
Q Consensus 162 ~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 203 (373)
.|.+... ..+.+++......++.++.++-..+....+...+
T Consensus 61 ~g~~~s~-~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 61 LGFALSG-ISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 101 (447)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 4544332 3344555555666666666655554444444333
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=5.69 E-value=5.6e+02 Score=19.30 Aligned_cols=42 Identities=5% Similarity=-0.233 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHhccCCCcHHHH
Q 017343 7 FWTKKTLLGLGLGQFLSLLITSTGFSSS-ELARKGINAPTSQS 48 (373)
Q Consensus 7 ~~~~~~~~~~~l~~~~~l~~~~~~~~~~-~l~~~~~~~p~~~~ 48 (373)
++.|+.+.-.+...+..+.++....+.. ++.+.-..++.++.
T Consensus 4 lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g 46 (417)
T d1pv7a_ 4 LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTG 46 (417)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHH
Confidence 4445555544444444555554444433 34443233455543
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.43 E-value=1.9e+02 Score=13.50 Aligned_cols=16 Identities=13% Similarity=0.079 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhccccc
Q 017343 265 MWAVLIRIGAYHEKVD 280 (373)
Q Consensus 265 v~~~l~~~~~~~e~~~ 280 (373)
+++..+-.++|.|+|.
T Consensus 13 ~i~lfffaiffreppr 28 (30)
T d2axtt1 13 IIALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHhcCCCC
Confidence 3344444455677663
No 6
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.83 E-value=6.4e+02 Score=18.92 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=18.3
Q ss_pred ccchHHHHHHHHHHHHH----HHHHHHHHhccchhHHHH
Q 017343 71 KAKWYYYLILGLIDVEG----NFLVVKAYQYTSLTSVML 105 (373)
Q Consensus 71 ~~~~~~~~~~g~~~~~~----~~~~~~al~~~~~~~~~~ 105 (373)
|...++++..|++..+. ...+...+.++..+..-.
T Consensus 49 r~~p~kyi~PG~~~l~~Fvi~Pi~yT~~iaFTNy~tgh~ 87 (248)
T d2r6gf1 49 KAYAWRYVYPGMAGMGLFVLFPLVCTIAIAFTNYSSTNQ 87 (248)
T ss_dssp CCTTHHHHHHHHHHHHHHTHHHHHHHHHGGGBCCSSTTC
T ss_pred CccceehhhhHHHHHHHHHHHhheeEEEEEEEEcCCCcc
Confidence 44455666666655444 444445555555444433
No 7
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=4.01 E-value=4.4e+02 Score=20.78 Aligned_cols=18 Identities=11% Similarity=0.071 Sum_probs=10.2
Q ss_pred CcchhhhHHHHHHHHHHH
Q 017343 1 MVSFKEFWTKKTLLGLGL 18 (373)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l 18 (373)
|.+.++++.||+.+-++.
T Consensus 1 m~~~~~~~~r~~~~~l~~ 18 (324)
T d1l7va_ 1 MLTLARQQQRQNIRWLLC 18 (324)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHH
Confidence 566666655555555443
No 8
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.95 E-value=6.8e+02 Score=18.01 Aligned_cols=28 Identities=7% Similarity=-0.071 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHH
Q 017343 266 WAVLIRIGAYHEKVDWLYFIAFAAVAVG 293 (373)
Q Consensus 266 ~~~l~~~~~~~e~~~~~~~~G~~li~~g 293 (373)
.+.+.+..+.+.+++....+|.++.+.-
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhhh
Confidence 3445566678999999998887765443
No 9
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.74 E-value=3.1e+02 Score=13.69 Aligned_cols=18 Identities=22% Similarity=0.157 Sum_probs=13.5
Q ss_pred chhhHHHHHHHHHHHHHH
Q 017343 161 RKGDALVIAGATLYAVSN 178 (373)
Q Consensus 161 ~~G~~l~l~a~~~~a~~~ 178 (373)
.+|.++.+.-++.++.|.
T Consensus 18 y~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 18 YLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 578888888877777664
No 10
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=2.84 E-value=1.4e+02 Score=22.53 Aligned_cols=73 Identities=10% Similarity=-0.118 Sum_probs=0.0
Q ss_pred CCCCCCCccccccchhhcCCCCCCccccccccCCCCCCccccccccccccccccccccccccCCCCCcccccC
Q 017343 300 GDKDDDQPCAEIVDEEALGNKDFEDEASCSQRTAGGSSKTRDASKHKSAASGIGENLLLENKNEGYDDALGKK 372 (373)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (373)
.+...+............+..+...+............+.....++....-....++.++++..++.+++||.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~i~~~~~~~~~~~~~~~EW~~ 214 (250)
T d1oedb_ 142 RKPAGDFVCPVDNARVAVQPERLFSEMKWHLNGLTQPVTLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQY 214 (250)
T ss_dssp -------------------------------------------------------------------------
T ss_pred cCCCCCCCCCCCccccCCCCccccccccCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Done!