BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017344
         (373 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SE8|A Chain A, Structure Of Single-Stranded Dna-Binding Protein (Ssb)
           From D. Radiodurans
          Length = 301

 Score = 29.3 bits (64), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 42  KKEDLQTLHKFKGSDIMIMERSLSFKNWDSNVPEKEKSNSISFK 85
           K  + Q     KG D +++E +L ++ W++  PE  K ++++ K
Sbjct: 61  KPAEWQAERNLKGGDAVVVEGTLEYRQWEA--PEGGKRSAVNVK 102


>pdb|3UDG|A Chain A, Structure Of Deinococcus Radiodurans Ssb Bound To Ssdna
 pdb|3UDG|B Chain B, Structure Of Deinococcus Radiodurans Ssb Bound To Ssdna
 pdb|3UDG|C Chain C, Structure Of Deinococcus Radiodurans Ssb Bound To Ssdna
          Length = 301

 Score = 28.9 bits (63), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 42  KKEDLQTLHKFKGSDIMIMERSLSFKNWDSNVPEKEKSNSISFK 85
           K  + Q     KG D +++E +L ++ W++  PE  K ++++ K
Sbjct: 61  KPAEWQAERNLKGGDAVVVEGTLEYRQWEA--PEGGKRSAVNVK 102


>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
           A Porcine Respiratory Coronavirus In Complex With The
           Pig Aminopeptidase N Ectodomain
 pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
           A Porcine Respiratory Coronavirus In Complex With The
           Pig Aminopeptidase N Ectodomain
          Length = 959

 Score = 28.1 bits (61), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 11/61 (18%)

Query: 3   LSLSLLVSTWSEILQNY----FGFTNRVEKVIRRSASFGTKSFKKEDLQTLHKFKGSDIM 58
           L+   + S W ++ Q+Y    F F+N ++ V RR +S       + +LQ L +FK +++ 
Sbjct: 854 LAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSS-------EFELQQLEQFKKNNMD 906

Query: 59  I 59
           +
Sbjct: 907 V 907


>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Cleaved Poly-Alanine
 pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Substance P
          Length = 908

 Score = 27.7 bits (60), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 11/59 (18%)

Query: 3   LSLSLLVSTWSEILQNY----FGFTNRVEKVIRRSASFGTKSFKKEDLQTLHKFKGSDI 57
           L+   + S W ++ Q+Y    F F+N ++ V RR +S       + +LQ L +FK +++
Sbjct: 810 LAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSS-------EFELQQLEQFKKNNM 861


>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
 pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Alanine
 pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Bestatin
          Length = 909

 Score = 27.7 bits (60), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 11/59 (18%)

Query: 3   LSLSLLVSTWSEILQNY----FGFTNRVEKVIRRSASFGTKSFKKEDLQTLHKFKGSDI 57
           L+   + S W ++ Q+Y    F F+N ++ V RR +S       + +LQ L +FK +++
Sbjct: 811 LAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSS-------EFELQQLEQFKKNNM 862


>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Poly- Alanine
          Length = 908

 Score = 27.7 bits (60), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 11/59 (18%)

Query: 3   LSLSLLVSTWSEILQNY----FGFTNRVEKVIRRSASFGTKSFKKEDLQTLHKFKGSDI 57
           L+   + S W ++ Q+Y    F F+N ++ V RR +S       + +LQ L +FK +++
Sbjct: 810 LAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSS-------EFELQQLEQFKKNNM 861


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,304,015
Number of Sequences: 62578
Number of extensions: 464621
Number of successful extensions: 1153
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1153
Number of HSP's gapped (non-prelim): 14
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)