BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017344
(373 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91ZH7|ABHD3_MOUSE Abhydrolase domain-containing protein 3 OS=Mus musculus GN=Abhd3
PE=2 SV=1
Length = 411
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 322 AITAAGRLVAHDGILEAIWPYSGHYLPTEENFKEFVSFLEEHSVDLTNV 370
+TA G H G LE IWP Y+ + FK+FV + EH +L+N+
Sbjct: 368 VLTAYG---GHIGFLEGIWPRQCTYM--DRVFKQFVQAMVEHGHELSNM 411
>sp|Q54T46|XPP3_DICDI Probable Xaa-Pro aminopeptidase 3 OS=Dictyostelium discoideum
GN=xpnpep3 PE=2 SV=1
Length = 518
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 57 IMIMERSLSFKNWDSNVPEKEKSNSISFKDKMNKPTILLPEPVVFH-SPRPVSELDAAAT 115
I+ +E + +DSNVPEK + SI +D + P + V+ H +P+ +SE+++ +
Sbjct: 457 IITIEPGIYISKYDSNVPEKYRGISIRVEDDVVIPNLNNSPLVLTHLAPKEISEIESIMS 516
>sp|Q9PR83|SYK_UREPA Lysine--tRNA ligase OS=Ureaplasma parvum serovar 3 (strain ATCC
700970) GN=lysS PE=3 SV=1
Length = 493
Score = 32.0 bits (71), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 187 DENAQKLALQHWLEAIDPRHRYGHNLHFYYDIWSDSKSTQPFFYW 231
DE A +LA +H ++ +D + +GH ++ +++ + + K +P F +
Sbjct: 334 DEQAIELAKKHHVKLLDHQKNFGHIVNAFFETFVEEKLVEPTFVY 378
>sp|B1AI47|SYK_UREP2 Lysine--tRNA ligase OS=Ureaplasma parvum serovar 3 (strain ATCC
27815 / 27 / NCTC 11736) GN=lysS PE=3 SV=1
Length = 493
Score = 32.0 bits (71), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 187 DENAQKLALQHWLEAIDPRHRYGHNLHFYYDIWSDSKSTQPFFYW 231
DE A +LA +H ++ +D + +GH ++ +++ + + K +P F +
Sbjct: 334 DEQAIELAKKHHVKLLDHQKNFGHIVNAFFETFVEEKLVEPTFVY 378
>sp|B5ZAP2|SYK_UREU1 Lysine--tRNA ligase OS=Ureaplasma urealyticum serovar 10 (strain
ATCC 33699 / Western) GN=lysS PE=3 SV=1
Length = 493
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 187 DENAQKLALQHWLEAIDPRHRYGHNLHFYYDIWSDSKSTQPFFYW 231
DE A +LA +H ++ +D + +GH ++ +++ + + K +P F +
Sbjct: 334 DEQALELAKKHHVKLLDHQKNFGHIVNAFFETFVEEKLIEPTFVY 378
>sp|Q0VC00|ABHD3_BOVIN Abhydrolase domain-containing protein 3 OS=Bos taurus GN=ABHD3 PE=2
SV=1
Length = 411
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 331 AHDGILEAIWPYSGHYLPTEENFKEFVSFLEEHSVDLTNV 370
H G LE IWP Y+ + FK+FV + EH +L+++
Sbjct: 374 GHIGFLEGIWPRQSTYM--DRVFKQFVQAMIEHGHELSSM 411
>sp|O12971|LFNG_CHICK Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Gallus
gallus GN=LFNG PE=2 SV=1
Length = 363
Score = 32.0 bits (71), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 62/164 (37%), Gaps = 28/164 (17%)
Query: 212 LHFYYDIWSDSKSTQPFFYWLDVGDGKEVNLEKCPRNVLQRQCI-----KYLGPKEREEF 266
L D W F + DG++ L+K RNV+ C + L K E+
Sbjct: 114 LELLLDTWISRNRDMTFIF----TDGEDEELKKQARNVINTNCSAAHSRQALSCKMAVEY 169
Query: 267 EVVVESGK--LVYRQTGMFVNTNEDSKWIFVLSTSRALYVGQ--------------KKKG 310
+ +ESG+ + +VN K + ++ +Y+G+ + K
Sbjct: 170 DKFIESGRKWFCHVDDDNYVNVRTLVKLLSSYPHTQDIYIGKPSLDRPIQATERISENKM 229
Query: 311 VFQHSSFLSGGAITAAGRLVAHDGILEAIWPYSGHYLPTEENFK 354
H F +GGA R +A + + W GH++ T E +
Sbjct: 230 HPVHFWFATGGAGFCISRGLA---LKMSPWASGGHFMSTAEKIR 270
>sp|Q8WU67|ABHD3_HUMAN Abhydrolase domain-containing protein 3 OS=Homo sapiens GN=ABHD3
PE=2 SV=2
Length = 409
Score = 31.6 bits (70), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 331 AHDGILEAIWPYSGHYLPTEENFKEFVSFLEEHSVDLT 368
H G LE IWP Y+ + FK+FV + EH +L+
Sbjct: 374 GHIGFLEGIWPRQSTYM--DRVFKQFVQAMVEHGHELS 409
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,589,494
Number of Sequences: 539616
Number of extensions: 5856675
Number of successful extensions: 13955
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 13949
Number of HSP's gapped (non-prelim): 18
length of query: 373
length of database: 191,569,459
effective HSP length: 119
effective length of query: 254
effective length of database: 127,355,155
effective search space: 32348209370
effective search space used: 32348209370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)