Query 017344
Match_columns 373
No_of_seqs 158 out of 177
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 07:45:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00612 IQ: IQ calmodulin-bin 96.0 0.0045 9.8E-08 38.3 1.9 20 111-130 1-20 (21)
2 smart00015 IQ Short calmodulin 95.2 0.014 3E-07 37.7 2.0 21 110-130 2-22 (26)
3 PF13360 PQQ_2: PQQ-like domai 75.4 11 0.00024 33.2 6.9 74 272-345 12-97 (238)
4 TIGR03300 assembly_YfgL outer 71.0 47 0.001 32.2 10.6 91 256-346 244-342 (377)
5 cd02885 IPP_Isomerase Isopente 67.9 22 0.00048 31.2 7.0 76 276-371 6-94 (165)
6 PRK11138 outer membrane biogen 67.9 22 0.00048 35.1 7.7 91 255-345 258-356 (394)
7 TIGR03300 assembly_YfgL outer 66.5 20 0.00044 34.7 7.1 75 265-339 291-376 (377)
8 PRK11138 outer membrane biogen 66.0 23 0.0005 34.9 7.4 113 227-340 266-392 (394)
9 PF02375 JmjN: jmjN domain; I 58.7 5.1 0.00011 28.2 1.0 17 346-362 3-19 (34)
10 PF13360 PQQ_2: PQQ-like domai 58.5 54 0.0012 28.9 7.7 94 252-345 35-143 (238)
11 PF08763 Ca_chan_IQ: Voltage g 57.8 7.6 0.00016 27.9 1.7 20 111-130 9-28 (35)
12 TIGR02150 IPP_isom_1 isopenten 53.5 70 0.0015 28.1 7.5 60 290-371 29-89 (158)
13 KOG0377 Protein serine/threoni 49.1 9.8 0.00021 40.9 1.7 22 111-132 17-38 (631)
14 PF01453 B_lectin: D-mannose b 45.8 1.3E+02 0.0029 25.3 7.8 65 264-329 19-91 (114)
15 PF13570 PQQ_3: PQQ-like domai 44.6 37 0.00081 23.1 3.6 16 290-305 21-36 (40)
16 smart00701 PGRP Animal peptido 41.0 73 0.0016 28.2 5.7 57 291-361 64-122 (142)
17 PF13509 S1_2: S1 domain; PDB: 39.1 36 0.00079 25.9 3.1 34 226-270 13-48 (61)
18 KOG4427 E3 ubiquitin protein l 38.8 16 0.00035 41.5 1.5 25 109-133 28-52 (1096)
19 PF13344 Hydrolase_6: Haloacid 38.5 17 0.00037 30.0 1.3 60 294-369 1-60 (101)
20 smart00545 JmjN Small domain f 37.5 22 0.00048 26.1 1.6 17 346-362 5-21 (42)
21 KOG0942 E3 ubiquitin protein l 36.7 17 0.00036 41.8 1.2 22 109-130 27-48 (1001)
22 COG4632 EpsL Exopolysaccharide 35.7 50 0.0011 33.6 4.2 63 267-335 156-220 (320)
23 PRK03759 isopentenyl-diphospha 35.3 1.5E+02 0.0032 26.7 6.9 60 291-370 37-97 (184)
24 cd00216 PQQ_DH Dehydrogenases 34.6 1.3E+02 0.0028 31.2 7.2 95 251-345 59-186 (488)
25 cd03676 Nudix_hydrolase_3 Memb 32.7 1.1E+02 0.0023 27.3 5.5 58 292-370 38-99 (180)
26 PF13128 DUF3954: Protein of u 31.6 49 0.0011 25.5 2.6 20 326-345 10-30 (50)
27 PRK14464 ribosomal RNA large s 29.8 43 0.00093 34.2 2.7 27 341-367 283-309 (344)
28 PF00235 Profilin: Profilin; 29.0 19 0.0004 30.1 0.0 42 317-362 10-52 (121)
29 COG4337 Uncharacterized protei 28.6 99 0.0021 29.4 4.7 25 289-319 179-203 (206)
30 PF15537 Toxin_59: Putative to 28.4 49 0.0011 29.7 2.5 57 290-347 50-115 (125)
31 TIGR03075 PQQ_enz_alc_DH PQQ-d 28.2 2.7E+02 0.0058 29.7 8.3 97 250-346 66-193 (527)
32 PF10411 DsbC_N: Disulfide bon 27.8 1.1E+02 0.0024 23.1 4.1 14 265-278 25-38 (57)
33 cd04904 ACT_AAAH ACT domain of 27.5 45 0.00098 25.9 1.9 23 347-371 10-32 (74)
34 TIGR03074 PQQ_membr_DH membran 26.6 2.9E+02 0.0062 31.3 8.5 101 242-345 186-347 (764)
35 cd05727 Ig2_Contactin-2-like S 26.3 1.8E+02 0.0039 24.4 5.4 32 274-306 35-66 (96)
36 cd00148 PROF Profilin binds ac 25.9 55 0.0012 28.3 2.4 44 316-362 9-53 (127)
37 PF09500 YiiD_Cterm: Putative 25.0 23 0.0005 31.9 -0.1 38 327-364 74-116 (144)
38 PRK13165 cytochrome c-type bio 24.8 5.7E+02 0.012 23.8 9.2 69 291-371 79-154 (160)
39 cd04970 Ig6_Contactin_like Six 24.6 2.5E+02 0.0055 21.4 5.7 59 274-332 18-82 (85)
40 cd00216 PQQ_DH Dehydrogenases 22.9 4E+02 0.0086 27.7 8.3 72 269-341 372-456 (488)
41 COG2323 Predicted membrane pro 22.3 30 0.00066 33.5 0.1 46 316-371 88-134 (224)
42 smart00108 B_lectin Bulb-type 22.1 2.5E+02 0.0053 23.2 5.5 15 292-306 56-70 (114)
43 COG1520 FOG: WD40-like repeat 20.6 3.6E+02 0.0079 26.4 7.2 28 317-344 144-173 (370)
44 PF10384 Scm3: Centromere prot 20.6 48 0.001 26.0 0.9 18 324-341 39-56 (58)
45 PRK14461 ribosomal RNA large s 20.0 90 0.0019 32.5 2.9 26 342-367 319-344 (371)
No 1
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.02 E-value=0.0045 Score=38.31 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhhhhhhhcc
Q 017344 111 DAAATKLQKVYKSYRTRRNL 130 (373)
Q Consensus 111 ~~AA~~iQk~YRgyRTRR~L 130 (373)
.+||++||+.||||..|+++
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhc
Confidence 37999999999999999864
No 2
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.24 E-value=0.014 Score=37.72 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhhhhhhhcc
Q 017344 110 LDAAATKLQKVYKSYRTRRNL 130 (373)
Q Consensus 110 ~~~AA~~iQk~YRgyRTRR~L 130 (373)
...||++||+.||||..|++.
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 468999999999999999986
No 3
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=75.37 E-value=11 Score=33.18 Aligned_cols=74 Identities=27% Similarity=0.343 Sum_probs=47.8
Q ss_pred cCeEEEeeC-----CceEe-ccCCCeEEEEEcCCCceEEeeccCCceeeccCCCC----CccceeeeEEEe--cceeEEE
Q 017344 272 SGKLVYRQT-----GMFVN-TNEDSKWIFVLSTSRALYVGQKKKGVFQHSSFLSG----GAITAAGRLVAH--DGILEAI 339 (373)
Q Consensus 272 dGrL~y~~s-----G~~vd-Tt~~~kwIFVmdtsg~LYvG~KkkG~FqHSSFLaG----g~V~AAG~I~V~--nG~Lk~I 339 (373)
+|+.+|... +.++. +...+..+||.+.++.||+=....|....+.=+.+ .++...|.|.+- +|.|..|
T Consensus 12 tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~ 91 (238)
T PF13360_consen 12 TGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYAL 91 (238)
T ss_dssp TTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEE
T ss_pred CCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEec
Confidence 788887762 33332 23245678888888888888877776543322222 245566676654 6788888
Q ss_pred cCCCCC
Q 017344 340 WPYSGH 345 (373)
Q Consensus 340 sp~SGH 345 (373)
...+|+
T Consensus 92 d~~tG~ 97 (238)
T PF13360_consen 92 DAKTGK 97 (238)
T ss_dssp ETTTSC
T ss_pred ccCCcc
Confidence 888876
No 4
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=71.01 E-value=47 Score=32.20 Aligned_cols=91 Identities=13% Similarity=0.215 Sum_probs=52.3
Q ss_pred cccCcccccceEEEEecCeEEEeeCCceEec-cCCCeEEEEEcCCCceEEeeccCCceeec--cCC---CCCccceeeeE
Q 017344 256 KYLGPKEREEFEVVVESGKLVYRQTGMFVNT-NEDSKWIFVLSTSRALYVGQKKKGVFQHS--SFL---SGGAITAAGRL 329 (373)
Q Consensus 256 kYLspeERe~YeV~IedGrL~y~~sG~~vdT-t~~~kwIFVmdtsg~LYvG~KkkG~FqHS--SFL---aGg~V~AAG~I 329 (373)
-|++-..-.-|-+-.++|+++|..+.....+ .-.+..+||.+.+|.||+=....|....+ .+- ...++++.|.|
T Consensus 244 vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l 323 (377)
T TIGR03300 244 VYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYL 323 (377)
T ss_pred EEEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEE
Confidence 3443333333333334677777654211111 01245799999999999988777765432 221 23445566666
Q ss_pred EE--ecceeEEEcCCCCCC
Q 017344 330 VA--HDGILEAIWPYSGHY 346 (373)
Q Consensus 330 ~V--~nG~Lk~Isp~SGHY 346 (373)
.+ .+|.|..+++.+|-.
T Consensus 324 ~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 324 VVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred EEEeCCCEEEEEECCCCCE
Confidence 66 379998888877743
No 5
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=67.93 E-value=22 Score=31.21 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=49.5
Q ss_pred EEeeCCceEeccC------CC------eEEEEEcCCCceEEeeccCCceeeccCCCCCccceeeeEEEecceeEEEcCCC
Q 017344 276 VYRQTGMFVNTNE------DS------KWIFVLSTSRALYVGQKKKGVFQHSSFLSGGAITAAGRLVAHDGILEAIWPYS 343 (373)
Q Consensus 276 ~y~~sG~~vdTt~------~~------kwIFVmdtsg~LYvG~KkkG~FqHSSFLaGg~V~AAG~I~V~nG~Lk~Isp~S 343 (373)
+|+++|+++.+.. .+ ..++|.+.+|++++.+...+... ..|.... |-+
T Consensus 6 ~~d~~~~~~g~~~r~~~~~~~~~~~~~v~v~i~~~~~~iLl~kR~~~~~~----~Pg~w~~----------------~~g 65 (165)
T cd02885 6 LVDEDDNPIGTAEKLEAHLKGTLLHRAFSVFLFNSKGRLLLQRRALSKYT----FPGLWTN----------------TCC 65 (165)
T ss_pred EECCCCCCccccCHHHHhhcCCcceeEEEEEEEcCCCcEEEEeccCCCcc----CCCcccc----------------ccc
Confidence 5777777776653 12 25889999999999865433221 2232221 124
Q ss_pred CCCCCCHHHHHHHHHHHH-HcCCCCCCcc
Q 017344 344 GHYLPTEENFKEFVSFLE-EHSVDLTNVK 371 (373)
Q Consensus 344 GHYRPt~enf~~fl~~L~-e~GVDLs~V~ 371 (373)
||-.|.+.-....++-+. |-|+..+.+.
T Consensus 66 G~ie~GEt~~eaa~REl~EEtGl~~~~~~ 94 (165)
T cd02885 66 SHPLPGEGVKDAAQRRLREELGITGDLLE 94 (165)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCccchh
Confidence 888899888888898886 5698876543
No 6
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=67.93 E-value=22 Score=35.09 Aligned_cols=91 Identities=21% Similarity=0.285 Sum_probs=55.3
Q ss_pred ccccCcccccceEEEEecCeEEEeeC-CceEeccCCCeEEEEEcCCCceEEeeccCCceee-ccCC----CCCccceeee
Q 017344 255 IKYLGPKEREEFEVVVESGKLVYRQT-GMFVNTNEDSKWIFVLSTSRALYVGQKKKGVFQH-SSFL----SGGAITAAGR 328 (373)
Q Consensus 255 VkYLspeERe~YeV~IedGrL~y~~s-G~~vdTt~~~kwIFVmdtsg~LYvG~KkkG~FqH-SSFL----aGg~V~AAG~ 328 (373)
.-|+.-..-.-|-+-..+|+++|++. +.+.+..-.+..+||.+.+|.||+=..+.|...= ...+ ...++++-|.
T Consensus 258 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~ 337 (394)
T PRK11138 258 VVYALAYNGNLVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGY 337 (394)
T ss_pred EEEEEEcCCeEEEEECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCE
Confidence 34444333333334445788888753 1111111135579999999999998877775431 1111 2456777788
Q ss_pred EEEe--cceeEEEcCCCCC
Q 017344 329 LVAH--DGILEAIWPYSGH 345 (373)
Q Consensus 329 I~V~--nG~Lk~Isp~SGH 345 (373)
|.+- ||.|..|++.+|.
T Consensus 338 l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 338 LVVGDSEGYLHWINREDGR 356 (394)
T ss_pred EEEEeCCCEEEEEECCCCC
Confidence 8774 7999999988875
No 7
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=66.54 E-value=20 Score=34.69 Aligned_cols=75 Identities=16% Similarity=0.124 Sum_probs=44.5
Q ss_pred ceEEEEecCeEEEeeCC--ceEecc--CCCeEEEEEcCCCceEEeeccCCceeecc-----CCCCCccceeeeEEEe--c
Q 017344 265 EFEVVVESGKLVYRQTG--MFVNTN--EDSKWIFVLSTSRALYVGQKKKGVFQHSS-----FLSGGAITAAGRLVAH--D 333 (373)
Q Consensus 265 ~YeV~IedGrL~y~~sG--~~vdTt--~~~kwIFVmdtsg~LYvG~KkkG~FqHSS-----FLaGg~V~AAG~I~V~--n 333 (373)
-|-+-..+|+++|.... ...-++ -.+..+||.+.+|.||+-....|...-+. -....|+++-|.|.|- |
T Consensus 291 l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~d 370 (377)
T TIGR03300 291 VVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRD 370 (377)
T ss_pred EEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCC
Confidence 33333446777776521 101111 02457999999999999887778775322 2334556666666664 7
Q ss_pred ceeEEE
Q 017344 334 GILEAI 339 (373)
Q Consensus 334 G~Lk~I 339 (373)
|.|..+
T Consensus 371 G~l~~~ 376 (377)
T TIGR03300 371 GDLYAF 376 (377)
T ss_pred ceEEEe
Confidence 877654
No 8
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=65.99 E-value=23 Score=34.94 Aligned_cols=113 Identities=17% Similarity=0.175 Sum_probs=64.8
Q ss_pred CceEEeeccCCccc---cCCCCCccccccccccccCcccccceEEEEecCeEEEeeCC--ceEeccC--CCeEEEEEcCC
Q 017344 227 PFFYWLDVGDGKEV---NLEKCPRNVLQRQCIKYLGPKEREEFEVVVESGKLVYRQTG--MFVNTNE--DSKWIFVLSTS 299 (373)
Q Consensus 227 ~FfyWLD~GeGk~v---~le~cpR~~L~~q~VkYLspeERe~YeV~IedGrL~y~~sG--~~vdTt~--~~kwIFVmdts 299 (373)
.-+|-||.-.|+.+ ++.... .-......-|+.-..-.-|-+-..+|+++|..+. ....++. .+..+||.+.+
T Consensus 266 g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~ 344 (394)
T PRK11138 266 GNLVALDLRSGQIVWKREYGSVN-DFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSE 344 (394)
T ss_pred CeEEEEECCCCCEEEeecCCCcc-CcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCC
Confidence 45677888778753 121111 1112223345554444445555557888886542 1111111 24468999999
Q ss_pred CceEEeeccCCceeeccCC-----CCCccceeeeEEEe--cceeEEEc
Q 017344 300 RALYVGQKKKGVFQHSSFL-----SGGAITAAGRLVAH--DGILEAIW 340 (373)
Q Consensus 300 g~LYvG~KkkG~FqHSSFL-----aGg~V~AAG~I~V~--nG~Lk~Is 340 (373)
|.||+=....|.+--+.-+ ...|+++-|+|.|- ||.|..|.
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEe
Confidence 9999877667765433322 23567777888774 78888775
No 9
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=58.65 E-value=5.1 Score=28.22 Aligned_cols=17 Identities=29% Similarity=0.751 Sum_probs=11.5
Q ss_pred CCCCHHHHHHHHHHHHH
Q 017344 346 YLPTEENFKEFVSFLEE 362 (373)
Q Consensus 346 YRPt~enf~~fl~~L~e 362 (373)
|+||.++|.+|+++++.
T Consensus 3 f~Pt~eEF~dp~~yi~~ 19 (34)
T PF02375_consen 3 FYPTMEEFKDPIKYISS 19 (34)
T ss_dssp E---HHHHS-HHHHHHH
T ss_pred ccCCHHHHhCHHHHHHH
Confidence 68999999999999875
No 10
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=58.47 E-value=54 Score=28.90 Aligned_cols=94 Identities=22% Similarity=0.324 Sum_probs=53.3
Q ss_pred cccccccCcccccceEEEEecCeEEEeeCC-ceEecc--CCCeEEEEEcCCCceEEeeccCCceeeccCC---------C
Q 017344 252 RQCIKYLGPKEREEFEVVVESGKLVYRQTG-MFVNTN--EDSKWIFVLSTSRALYVGQKKKGVFQHSSFL---------S 319 (373)
Q Consensus 252 ~q~VkYLspeERe~YeV~IedGrL~y~~sG-~~vdTt--~~~kwIFVmdtsg~LYvG~KkkG~FqHSSFL---------a 319 (373)
....-|....+..-|-+-+.+|+++|..+- .++... -.+.-+||.+.++.||+=..+.|..-.+... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~ 114 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRS 114 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeecccccccccccc
Confidence 333445553444444444458998888751 111111 1234688888888899888778877665311 1
Q ss_pred CCccceee-eEEE-e-cceeEEEcCCCCC
Q 017344 320 GGAITAAG-RLVA-H-DGILEAIWPYSGH 345 (373)
Q Consensus 320 Gg~V~AAG-~I~V-~-nG~Lk~Isp~SGH 345 (373)
.......| .+.+ . +|.|..+.+.+|.
T Consensus 115 ~~~~~~~~~~~~~~~~~g~l~~~d~~tG~ 143 (238)
T PF13360_consen 115 SSSPAVDGDRLYVGTSSGKLVALDPKTGK 143 (238)
T ss_dssp -SEEEEETTEEEEEETCSEEEEEETTTTE
T ss_pred ccCceEecCEEEEEeccCcEEEEecCCCc
Confidence 22222233 2333 3 6889999888885
No 11
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=57.78 E-value=7.6 Score=27.92 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhhhhhhhcc
Q 017344 111 DAAATKLQKVYKSYRTRRNL 130 (373)
Q Consensus 111 ~~AA~~iQk~YRgyRTRR~L 130 (373)
-=||..||..||.++.||+-
T Consensus 9 ~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 9 FYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999863
No 12
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=53.45 E-value=70 Score=28.09 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=37.3
Q ss_pred CeEEEEEcCCCceEEeeccCCceeeccCCCCCccceeeeEEEecceeEEEcCCCCCCCCCHHHHHHHHHHHH-HcCCCCC
Q 017344 290 SKWIFVLSTSRALYVGQKKKGVFQHSSFLSGGAITAAGRLVAHDGILEAIWPYSGHYLPTEENFKEFVSFLE-EHSVDLT 368 (373)
Q Consensus 290 ~kwIFVmdtsg~LYvG~KkkG~FqHSSFLaGg~V~AAG~I~V~nG~Lk~Isp~SGHYRPt~enf~~fl~~L~-e~GVDLs 368 (373)
+..++|+|.+|++++.+...+.. ...|.....+ +||--|++ ....++.|+ |-|+++.
T Consensus 29 ~v~v~v~~~~g~vLl~kR~~~k~----~~PG~W~~~~----------------gG~v~~GE--~eaa~REl~EE~Gl~~~ 86 (158)
T TIGR02150 29 AFSVFLFNEEGQLLLQRRALSKI----TWPGVWTNSC----------------CSHPLPGE--LEAAIRRLREELGIPAD 86 (158)
T ss_pred EEEEEEEcCCCeEEEEeccCCCc----CCCCCccccc----------------cCCCCccc--HHHHHHHHHHHHCCCcc
Confidence 45789999999999986543322 1233332211 25666666 377777775 6799887
Q ss_pred Ccc
Q 017344 369 NVK 371 (373)
Q Consensus 369 ~V~ 371 (373)
.+.
T Consensus 87 ~~~ 89 (158)
T TIGR02150 87 DVP 89 (158)
T ss_pred ccc
Confidence 653
No 13
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=49.14 E-value=9.8 Score=40.88 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhhhhhhhccCC
Q 017344 111 DAAATKLQKVYKSYRTRRNLAD 132 (373)
Q Consensus 111 ~~AA~~iQk~YRgyRTRR~Lag 132 (373)
-+||+.|||-||+|-.|+++.-
T Consensus 17 ikaAilIQkWYRr~~ARle~rr 38 (631)
T KOG0377|consen 17 IKAAILIQKWYRRYEARLEARR 38 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999987653
No 14
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=45.79 E-value=1.3e+02 Score=25.31 Aligned_cols=65 Identities=20% Similarity=0.304 Sum_probs=42.8
Q ss_pred cceEEEEe-cCeEE-EeeCCceEecc----CC--CeEEEEEcCCCceEEeeccCCceeeccCCCCCccceeeeE
Q 017344 264 EEFEVVVE-SGKLV-YRQTGMFVNTN----ED--SKWIFVLSTSRALYVGQKKKGVFQHSSFLSGGAITAAGRL 329 (373)
Q Consensus 264 e~YeV~Ie-dGrL~-y~~sG~~vdTt----~~--~kwIFVmdtsg~LYvG~KkkG~FqHSSFLaGg~V~AAG~I 329 (373)
..|.+++. ||.|+ |+.+|..+-.+ .. ....-+|..+|+|.+-.. .+..==+||-....+...|+-
T Consensus 19 ~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~-~~~~lW~Sf~~ptdt~L~~q~ 91 (114)
T PF01453_consen 19 GNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDS-SGNVLWQSFDYPTDTLLPGQK 91 (114)
T ss_dssp TTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEET-TSEEEEESTTSSS-EEEEEET
T ss_pred ccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEee-cceEEEeecCCCccEEEeccC
Confidence 45888886 89886 66666667433 22 256777778899999874 455555667777666665553
No 15
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=44.60 E-value=37 Score=23.12 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=10.3
Q ss_pred CeEEEEEcCCCceEEe
Q 017344 290 SKWIFVLSTSRALYVG 305 (373)
Q Consensus 290 ~kwIFVmdtsg~LYvG 305 (373)
+..+||.+.+|+||+=
T Consensus 21 ~g~vyv~~~dg~l~al 36 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYAL 36 (40)
T ss_dssp TSEEEEE-TTSEEEEE
T ss_pred CCEEEEEcCCCEEEEE
Confidence 3457777777777764
No 16
>smart00701 PGRP Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. The bacteriophage molecule, but not its moth homologue, has been shown to have N-acetylmuramoyl-L-alanine amidase activity. One member of this family, Tag7, is a cytokine.
Probab=41.03 E-value=73 Score=28.19 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=32.6
Q ss_pred eEEEEEcCCCceEEeecc--CCceeeccCCCCCccceeeeEEEecceeEEEcCCCCCCCCCHHHHHHHHHHHH
Q 017344 291 KWIFVLSTSRALYVGQKK--KGVFQHSSFLSGGAITAAGRLVAHDGILEAIWPYSGHYLPTEENFKEFVSFLE 361 (373)
Q Consensus 291 kwIFVmdtsg~LYvG~Kk--kG~FqHSSFLaGg~V~AAG~I~V~nG~Lk~Isp~SGHYRPt~enf~~fl~~L~ 361 (373)
-+=|+++.+|++|.|..- .|. |.. | .-++.|.|. +--.-..+.||.+.+......|.
T Consensus 64 gYhflI~~dG~IyeGR~~~~~ga--h~~---g---~N~~sigI~------~iG~~~~~~pt~~q~~al~~Li~ 122 (142)
T smart00701 64 GYNFLVGGDGKVYEGRGWNVVGA--HTG---G---YNDISLGIA------FIGNFTDKLPTDAALDAAQDLLA 122 (142)
T ss_pred CCeEEEcCCCEEEECCCCCcccc--ccc---C---CCCCeEEEE------EEeCCCCCCCcHHHHHHHHHHHH
Confidence 467999999999999641 222 211 1 112223332 11123457899988776665554
No 17
>PF13509 S1_2: S1 domain; PDB: 3GO5_A.
Probab=39.08 E-value=36 Score=25.90 Aligned_cols=34 Identities=47% Similarity=0.670 Sum_probs=21.1
Q ss_pred CCceEEeeccCCccccCC--CCCccccccccccccCcccccceEEEE
Q 017344 226 QPFFYWLDVGDGKEVNLE--KCPRNVLQRQCIKYLGPKEREEFEVVV 270 (373)
Q Consensus 226 ~~FfyWLD~GeGk~v~le--~cpR~~L~~q~VkYLspeERe~YeV~I 270 (373)
.+|.|+||.|++++|-|| +||. ..++-+.++|.|
T Consensus 13 ~~~g~fL~~~~~~~vlLp~~e~~~-----------~~~~Gd~v~VFv 48 (61)
T PF13509_consen 13 NEFGYFLDDGEGKEVLLPKSEVPE-----------PLKVGDEVEVFV 48 (61)
T ss_dssp -SSEEEEEETT-EEEEEEGGG-----------------TTSEEEEEE
T ss_pred eCCEEEEECCCCCEEEechHHcCC-----------CCCCCCEEEEEE
Confidence 468899999999999886 5552 245666777775
No 18
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.83 E-value=16 Score=41.52 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhccCCc
Q 017344 109 ELDAAATKLQKVYKSYRTRRNLADC 133 (373)
Q Consensus 109 e~~~AA~~iQk~YRgyRTRR~Lag~ 133 (373)
..++||..||++.|||=+|+.+++-
T Consensus 28 rr~~aa~~iq~~lrsyl~Rkk~~~~ 52 (1096)
T KOG4427|consen 28 RREAAALFIQRVLRSYLVRKKAQIE 52 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999987653
No 19
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=38.48 E-value=17 Score=29.98 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=40.9
Q ss_pred EEEcCCCceEEeeccCCceeeccCCCCCccceeeeEEEecceeEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCCC
Q 017344 294 FVLSTSRALYVGQKKKGVFQHSSFLSGGAITAAGRLVAHDGILEAIWPYSGHYLPTEENFKEFVSFLEEHSVDLTN 369 (373)
Q Consensus 294 FVmdtsg~LYvG~KkkG~FqHSSFLaGg~V~AAG~I~V~nG~Lk~Isp~SGHYRPt~enf~~fl~~L~e~GVDLs~ 369 (373)
|++|.+|.||.|.+ .+- |++.+--.|.-.+-.+.-++|.|.+ .-..+.+.|+..|++.+.
T Consensus 1 ~l~D~dGvl~~g~~---------~ip-ga~e~l~~L~~~g~~~~~lTNns~~------s~~~~~~~L~~~Gi~~~~ 60 (101)
T PF13344_consen 1 FLFDLDGVLYNGNE---------PIP-GAVEALDALRERGKPVVFLTNNSSR------SREEYAKKLKKLGIPVDE 60 (101)
T ss_dssp EEEESTTTSEETTE---------E-T-THHHHHHHHHHTTSEEEEEES-SSS-------HHHHHHHHHHTTTT--G
T ss_pred CEEeCccEeEeCCC---------cCc-CHHHHHHHHHHcCCCEEEEeCCCCC------CHHHHHHHHHhcCcCCCc
Confidence 78999999998753 233 3455555666667889999999875 335677788899988764
No 20
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=37.54 E-value=22 Score=26.10 Aligned_cols=17 Identities=29% Similarity=0.765 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHHH
Q 017344 346 YLPTEENFKEFVSFLEE 362 (373)
Q Consensus 346 YRPt~enf~~fl~~L~e 362 (373)
|+||.++|..++.+++.
T Consensus 5 f~Pt~eEF~Dp~~yi~~ 21 (42)
T smart00545 5 FYPTMEEFKDPLAYISK 21 (42)
T ss_pred EcCCHHHHHCHHHHHHH
Confidence 78999999999998874
No 21
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.73 E-value=17 Score=41.79 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHhhhhhhhhcc
Q 017344 109 ELDAAATKLQKVYKSYRTRRNL 130 (373)
Q Consensus 109 e~~~AA~~iQk~YRgyRTRR~L 130 (373)
.++.+|++||+-.||||.|++-
T Consensus 27 k~e~~av~vQs~~Rg~~~r~~~ 48 (1001)
T KOG0942|consen 27 KQEKNAVKVQSFWRGFRVRHNQ 48 (1001)
T ss_pred HHhccchHHHHHHHHHHHHHHH
Confidence 3678999999999999999764
No 22
>COG4632 EpsL Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase [Carbohydrate transport and metabolism]
Probab=35.72 E-value=50 Score=33.57 Aligned_cols=63 Identities=21% Similarity=0.191 Sum_probs=39.3
Q ss_pred EEEEecCeEEEeeCCceEeccCCCeEEEEEcCCCceEEeeccCCceeeccCCCCCc-c-ceeeeEEEecce
Q 017344 267 EVVVESGKLVYRQTGMFVNTNEDSKWIFVLSTSRALYVGQKKKGVFQHSSFLSGGA-I-TAAGRLVAHDGI 335 (373)
Q Consensus 267 eV~IedGrL~y~~sG~~vdTt~~~kwIFVmdtsg~LYvG~KkkG~FqHSSFLaGg~-V-~AAG~I~V~nG~ 335 (373)
-++|.||+|+|.++=.-+. ..+-.|+++.+|+|-|+-..... +-++.+++ + .+-|-+.|+||+
T Consensus 156 GfqisdGklvkp~dw~~~t---~ae~~~aftkdG~lkVyg~~spa---~ll~sngaeasf~fgp~LIkdgk 220 (320)
T COG4632 156 GFQISDGKLVKPYDWAGYT---GAEACVAFTKDGTLKVYGRESPA---DLLISNGAEASFAFGPWLIKDGK 220 (320)
T ss_pred EEEEeCCeEeecCChhhhc---cccceEEEccCCcEEEcCCCChH---HHHHhccceeeeeeccEEEecCC
Confidence 6788999999976433222 23347788889999999421111 11333333 3 567778888875
No 23
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=35.26 E-value=1.5e+02 Score=26.68 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=38.4
Q ss_pred eEEEEEcCCCceEEeeccCCceeeccCCCCCccceeeeEEEecceeEEEcCCCCCCCCCHHHHHHHHHHHH-HcCCCCCC
Q 017344 291 KWIFVLSTSRALYVGQKKKGVFQHSSFLSGGAITAAGRLVAHDGILEAIWPYSGHYLPTEENFKEFVSFLE-EHSVDLTN 369 (373)
Q Consensus 291 kwIFVmdtsg~LYvG~KkkG~FqHSSFLaGg~V~AAG~I~V~nG~Lk~Isp~SGHYRPt~enf~~fl~~L~-e~GVDLs~ 369 (373)
..++|++.+|++++.....+.. ++ -|.... |-.||-.|++.-....++.|. |-|++..+
T Consensus 37 v~v~i~~~~g~vLL~rR~~~~~---~~-PG~w~~----------------~~gG~ve~GEt~~~aa~REl~EEtGl~~~~ 96 (184)
T PRK03759 37 FSCYLFDADGRLLVTRRALSKK---TW-PGVWTN----------------SCCGHPQPGESLEDAVIRRCREELGVEITD 96 (184)
T ss_pred EEEEEEcCCCeEEEEEccCCCC---CC-CCcccc----------------cccCCCCCCCCHHHHHHHHHHHHhCCCccc
Confidence 3578888888888876432211 11 222211 123999999988888888886 57988764
Q ss_pred c
Q 017344 370 V 370 (373)
Q Consensus 370 V 370 (373)
+
T Consensus 97 ~ 97 (184)
T PRK03759 97 L 97 (184)
T ss_pred c
Confidence 3
No 24
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=34.60 E-value=1.3e+02 Score=31.20 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=59.8
Q ss_pred ccccccccCcccccceEEEEecCeEEEeeCCceE-------ecc-----CCCeEEEEEcCCCceEEeeccCCcee--ec-
Q 017344 251 QRQCIKYLGPKEREEFEVVVESGKLVYRQTGMFV-------NTN-----EDSKWIFVLSTSRALYVGQKKKGVFQ--HS- 315 (373)
Q Consensus 251 ~~q~VkYLspeERe~YeV~IedGrL~y~~sG~~v-------dTt-----~~~kwIFVmdtsg~LYvG~KkkG~Fq--HS- 315 (373)
......|+......-|-+-...|+++|..+-..- -.. .++..+||-+.+|.||+=..+.|... +.
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 3344567776665555555568999987642110 000 01257899999999999876655332 21
Q ss_pred -------cCCCCCccceeeeEEEe-----------cceeEEEcCCCCC
Q 017344 316 -------SFLSGGAITAAGRLVAH-----------DGILEAIWPYSGH 345 (373)
Q Consensus 316 -------SFLaGg~V~AAG~I~V~-----------nG~Lk~Isp~SGH 345 (373)
-.+.+.+++..|.+.+- +|.|..+...+|.
T Consensus 139 ~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCc
Confidence 11566778877877763 5788999888875
No 25
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=32.74 E-value=1.1e+02 Score=27.28 Aligned_cols=58 Identities=14% Similarity=0.068 Sum_probs=36.9
Q ss_pred EEEEEcCC--CceEEeeccCCceeeccCCCCCc-cceeeeEEEecceeEEEcCCCCCCCCCHHHHHHHHHHHH-HcCCCC
Q 017344 292 WIFVLSTS--RALYVGQKKKGVFQHSSFLSGGA-ITAAGRLVAHDGILEAIWPYSGHYLPTEENFKEFVSFLE-EHSVDL 367 (373)
Q Consensus 292 wIFVmdts--g~LYvG~KkkG~FqHSSFLaGg~-V~AAG~I~V~nG~Lk~Isp~SGHYRPt~enf~~fl~~L~-e~GVDL 367 (373)
|+||.|.+ +.||+.+....+- +| -|.. .++| ||-.|.+.-...+++.|+ |-|++.
T Consensus 38 ~~~~~~~~~~~~l~lqrRs~~K~---~~-Pg~wd~~~~-----------------G~v~~gE~~~~aA~REl~EE~Gl~~ 96 (180)
T cd03676 38 NGYVRDEDGGLRIWIPRRSPTKA---TW-PGMLDNLVA-----------------GGLGHGEGPEETLVKECDEEAGLPE 96 (180)
T ss_pred EEEEEcCCCCeEEEEEeccCCCC---CC-CCceeeecc-----------------cCCCCCCCHHHHHHHHHHHHhCCCH
Confidence 57888876 8899988654432 22 3343 2333 455566666677888886 579887
Q ss_pred CCc
Q 017344 368 TNV 370 (373)
Q Consensus 368 s~V 370 (373)
..+
T Consensus 97 ~~~ 99 (180)
T cd03676 97 DLV 99 (180)
T ss_pred HHH
Confidence 653
No 26
>PF13128 DUF3954: Protein of unknown function (DUF3954)
Probab=31.57 E-value=49 Score=25.55 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=12.3
Q ss_pred eeeEEEecceeEEEc-CCCCC
Q 017344 326 AGRLVAHDGILEAIW-PYSGH 345 (373)
Q Consensus 326 AG~I~V~nG~Lk~Is-p~SGH 345 (373)
-|..+|+||.|..|. |.|||
T Consensus 10 ngiYiV~~G~v~~i~pP~sGf 30 (50)
T PF13128_consen 10 NGIYIVKDGEVTFIEPPESGF 30 (50)
T ss_pred CeEEEEECCeEEEcCCCCCCc
Confidence 356666777777773 44554
No 27
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.79 E-value=43 Score=34.19 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=24.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCC
Q 017344 341 PYSGHYLPTEENFKEFVSFLEEHSVDL 367 (373)
Q Consensus 341 p~SGHYRPt~enf~~fl~~L~e~GVDL 367 (373)
+.+.|.+|+.+...+|.+.|+.+||..
T Consensus 283 ~g~~~~rp~~~~i~~f~~~L~~~gi~~ 309 (344)
T PRK14464 283 DGDAYRRPSGERIVAMARYLHRRGVLT 309 (344)
T ss_pred CCCCccCCCHHHHHHHHHHHHHCCceE
Confidence 356899999999999999999999864
No 28
>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin). It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....
Probab=28.96 E-value=19 Score=30.09 Aligned_cols=42 Identities=24% Similarity=0.416 Sum_probs=33.6
Q ss_pred CCCCCccceeeeEEEecceeEEEcCCCCCC-CCCHHHHHHHHHHHHH
Q 017344 317 FLSGGAITAAGRLVAHDGILEAIWPYSGHY-LPTEENFKEFVSFLEE 362 (373)
Q Consensus 317 FLaGg~V~AAG~I~V~nG~Lk~Isp~SGHY-RPt~enf~~fl~~L~e 362 (373)
+++-+.+..|+.+- .||. +|..|+.+ .++.+++..+++.|++
T Consensus 10 L~~~~~~~~aaI~~-~dG~---vwA~s~~f~~~~~~E~~~i~~~f~~ 52 (121)
T PF00235_consen 10 LIGTGNITKAAIIG-SDGS---VWASSPGFSNISPEEAKAIIKAFNN 52 (121)
T ss_dssp HHTTSSESEEEEEE-TTSS---EEEEETTGGGCSHHHHHHHHHHHHS
T ss_pred hcccCcEeEEEEEc-CCCC---EEEecCCCCCCCHHHHHHHHHHhcC
Confidence 45556688888888 9994 55566778 9999999999998876
No 29
>COG4337 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.63 E-value=99 Score=29.45 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=19.6
Q ss_pred CCeEEEEEcCCCceEEeeccCCceeeccCCC
Q 017344 289 DSKWIFVLSTSRALYVGQKKKGVFQHSSFLS 319 (373)
Q Consensus 289 ~~kwIFVmdtsg~LYvG~KkkG~FqHSSFLa 319 (373)
+.+|.|--|..|.|-|- .||||+--
T Consensus 179 DKtWaFkKdd~G~lRIv------~HHSSLPY 203 (206)
T COG4337 179 DKTWAFKKDDQGQLRIV------LHHSSLPY 203 (206)
T ss_pred eceeeeeccCCCcEEEE------EecCCCCc
Confidence 45799999999988775 47999753
No 30
>PF15537 Toxin_59: Putative toxin 59
Probab=28.40 E-value=49 Score=29.74 Aligned_cols=57 Identities=21% Similarity=0.312 Sum_probs=33.7
Q ss_pred CeEEEEEcCCCceEEeecc----CCceeeccCC----CCCccceeeeEEE-ecceeEEEcCCCCCCC
Q 017344 290 SKWIFVLSTSRALYVGQKK----KGVFQHSSFL----SGGAITAAGRLVA-HDGILEAIWPYSGHYL 347 (373)
Q Consensus 290 ~kwIFVmdtsg~LYvG~Kk----kG~FqHSSFL----aGg~V~AAG~I~V-~nG~Lk~Isp~SGHYR 347 (373)
+.--||.|...+.|+--.. .+.-+|--++ +-.+++--|++.= .||.|.- .-+||||-
T Consensus 50 G~~eFVFDP~~~~Fa~G~~~~~~~~~~~H~~la~~iGA~~s~vvGGr~~R~~~G~l~T-newSGHyg 115 (125)
T PF15537_consen 50 GSIEFVFDPKTNRFAVGSPRDYGIDVSGHDQLARAIGADESTVVGGRFSRGPNGELST-NEWSGHYG 115 (125)
T ss_pred CCccEEEcCCcCeEeecCCcccccccchHHHHHHhcCCCCCeeEeeEEEecCCCCEee-cccccccc
Confidence 4557888877665544222 2445564333 3345666677766 5776643 45899995
No 31
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=28.19 E-value=2.7e+02 Score=29.68 Aligned_cols=97 Identities=12% Similarity=0.171 Sum_probs=61.3
Q ss_pred cccccccccCcccccceEEEEecCeEEEeeCCc-eEe--------ccC-----CCeEEEEEcCCCceEEeeccCCceee-
Q 017344 250 LQRQCIKYLGPKEREEFEVVVESGKLVYRQTGM-FVN--------TNE-----DSKWIFVLSTSRALYVGQKKKGVFQH- 314 (373)
Q Consensus 250 L~~q~VkYLspeERe~YeV~IedGrL~y~~sG~-~vd--------Tt~-----~~kwIFVmdtsg~LYvG~KkkG~FqH- 314 (373)
+....+.|++-....-|-+-...|+++|..+-. +.. +.. .+.-|||.+.++.||+=..+.|...=
T Consensus 66 vv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 66 LVVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred EEECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 445567777655444444445589999986521 100 000 12358888999999997766664421
Q ss_pred --------ccCCCCCccceeeeEEEe--------cceeEEEcCCCCCC
Q 017344 315 --------SSFLSGGAITAAGRLVAH--------DGILEAIWPYSGHY 346 (373)
Q Consensus 315 --------SSFLaGg~V~AAG~I~V~--------nG~Lk~Isp~SGHY 346 (373)
.....+.|+++-|.|.|- +|.|.++...+|.-
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCce
Confidence 112445677777877774 58999999999864
No 32
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=27.77 E-value=1.1e+02 Score=23.07 Aligned_cols=14 Identities=36% Similarity=0.762 Sum_probs=9.5
Q ss_pred ceEEEEecCeEEEe
Q 017344 265 EFEVVVESGKLVYR 278 (373)
Q Consensus 265 ~YeV~IedGrL~y~ 278 (373)
-|+|.+.+|.++|-
T Consensus 25 lyeV~~~~~~i~Y~ 38 (57)
T PF10411_consen 25 LYEVVLKGGGILYV 38 (57)
T ss_dssp EEEEEE-TTEEEEE
T ss_pred eEEEEECCCeEEEE
Confidence 68888877777665
No 33
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=27.48 E-value=45 Score=25.90 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCcc
Q 017344 347 LPTEENFKEFVSFLEEHSVDLTNVK 371 (373)
Q Consensus 347 RPt~enf~~fl~~L~e~GVDLs~V~ 371 (373)
+|+. +...++.|+++||+|++|+
T Consensus 10 ~pG~--L~~vL~~f~~~~iNlt~Ie 32 (74)
T cd04904 10 EVGA--LARALKLFEEFGVNLTHIE 32 (74)
T ss_pred CCcH--HHHHHHHHHHCCCcEEEEE
Confidence 5665 9999999999999999885
No 34
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=26.56 E-value=2.9e+02 Score=31.31 Aligned_cols=101 Identities=14% Similarity=0.220 Sum_probs=62.7
Q ss_pred CCCCCccccccccccccCcccccceEEEEecCeEEEeeCCce-Ee---------------c-------------cCCCeE
Q 017344 242 LEKCPRNVLQRQCIKYLGPKEREEFEVVVESGKLVYRQTGMF-VN---------------T-------------NEDSKW 292 (373)
Q Consensus 242 le~cpR~~L~~q~VkYLspeERe~YeV~IedGrL~y~~sG~~-vd---------------T-------------t~~~kw 292 (373)
.+.-| +.-..+.|+.-....-|-+--..|+.+|+.+-+. .+ + ...+.-
T Consensus 186 ~e~TP---lvvgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~r 262 (764)
T TIGR03074 186 FQATP---LKVGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARR 262 (764)
T ss_pred cccCC---EEECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCE
Confidence 44445 5556667776443333333334899998864211 11 0 012347
Q ss_pred EEEEcCCCceEEeeccCCceeec--------------------cCCCCCccceeeeEEEe------------cceeEEEc
Q 017344 293 IFVLSTSRALYVGQKKKGVFQHS--------------------SFLSGGAITAAGRLVAH------------DGILEAIW 340 (373)
Q Consensus 293 IFVmdtsg~LYvG~KkkG~FqHS--------------------SFLaGg~V~AAG~I~V~------------nG~Lk~Is 340 (373)
|||-+.+++||+=..+.|+..-+ -...+.++++-|.++|- +|.|++++
T Consensus 263 V~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~D 342 (764)
T TIGR03074 263 IILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFD 342 (764)
T ss_pred EEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEE
Confidence 99999999999988777765421 01345577777777774 58899999
Q ss_pred CCCCC
Q 017344 341 PYSGH 345 (373)
Q Consensus 341 p~SGH 345 (373)
..+|.
T Consensus 343 a~TGk 347 (764)
T TIGR03074 343 VNTGA 347 (764)
T ss_pred CCCCc
Confidence 88885
No 35
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=26.30 E-value=1.8e+02 Score=24.36 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=22.4
Q ss_pred eEEEeeCCceEeccCCCeEEEEEcCCCceEEee
Q 017344 274 KLVYRQTGMFVNTNEDSKWIFVLSTSRALYVGQ 306 (373)
Q Consensus 274 rL~y~~sG~~vdTt~~~kwIFVmdtsg~LYvG~ 306 (373)
.+.|-+++.+.....+.. .||...+|+||+..
T Consensus 35 ~~~W~k~~~~~~~~~d~r-~~~~~~~G~L~fs~ 66 (96)
T cd05727 35 SYRWLLNEFPNFIPEDGR-RFVSQTNGNLYIAK 66 (96)
T ss_pred EEEEEECCcccccccCCC-eEEeCCCCcEEEee
Confidence 356888887764433333 47888899999997
No 36
>cd00148 PROF Profilin binds actin monomers, membrane polyphosphoinositides such as PI(4,5)P2, and poly-L-proline. Profilin can inhibit actin polymerization into F-actin by binding to monomeric actin (G-actin) and terminal F-actin subunits, but - as a regulator of the cytoskeleton - it may also promote actin polymerization. It plays a role in the assembly of branched actin filament networks, by activating WASP via binding to WASP's proline rich domain. Profilin may link the cytoskeleton with major signalling pathways by interacting with components of the phosphatidylinositol cycle and Ras pathway.
Probab=25.86 E-value=55 Score=28.28 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=35.8
Q ss_pred cCCCCCccceeeeEEEecceeEEEcCCCCC-CCCCHHHHHHHHHHHHH
Q 017344 316 SFLSGGAITAAGRLVAHDGILEAIWPYSGH-YLPTEENFKEFVSFLEE 362 (373)
Q Consensus 316 SFLaGg~V~AAG~I~V~nG~Lk~Isp~SGH-YRPt~enf~~fl~~L~e 362 (373)
++++.+.+..|..+..+||. +|..|.- +.++.+++..++..+++
T Consensus 9 ~L~~~g~~~~aAI~g~d~g~---vwA~s~~~f~~t~~E~~~i~~~f~d 53 (127)
T cd00148 9 NLLGTGKVDSAAIVGHDDGS---VWAASAGGFNLTPEEVGTLVAGFKD 53 (127)
T ss_pred HHhhcCCcCEEEEEecCCCC---eEEecCCCCccCHHHHHHHHHHccC
Confidence 36666678888888887686 5777888 99999999999997765
No 37
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=25.04 E-value=23 Score=31.94 Aligned_cols=38 Identities=24% Similarity=0.531 Sum_probs=19.6
Q ss_pred eeEEEecceeEEEcCCCCCCC-----CCHHHHHHHHHHHHHcC
Q 017344 327 GRLVAHDGILEAIWPYSGHYL-----PTEENFKEFVSFLEEHS 364 (373)
Q Consensus 327 G~I~V~nG~Lk~Isp~SGHYR-----Pt~enf~~fl~~L~e~G 364 (373)
|.|+|.+|.|++.-|-.|.++ |+++....|++-|++.|
T Consensus 74 ~~IVi~~~~i~Y~~Pv~~d~~A~~~~~~~~~~~~~~~~l~~~g 116 (144)
T PF09500_consen 74 GDIVIADSNIRYLKPVTGDFTARCSLPEPEDWERFLQTLARGG 116 (144)
T ss_dssp -EEEEEEEEEEE-S---S--EEEEE-------S---GGGGCTS
T ss_pred CcEEEEeCceEEcCCCCCCcEEEEeccccchhHHHHHHHHcCC
Confidence 899999999999999999985 77788888988887765
No 38
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=24.76 E-value=5.7e+02 Score=23.81 Aligned_cols=69 Identities=22% Similarity=0.249 Sum_probs=46.8
Q ss_pred eEEEEEcCCCc----eEEeeccCCceeeccCCCCCccceeeeEEEeccee---EEEcCCCCCCCCCHHHHHHHHHHHHHc
Q 017344 291 KWIFVLSTSRA----LYVGQKKKGVFQHSSFLSGGAITAAGRLVAHDGIL---EAIWPYSGHYLPTEENFKEFVSFLEEH 363 (373)
Q Consensus 291 kwIFVmdtsg~----LYvG~KkkG~FqHSSFLaGg~V~AAG~I~V~nG~L---k~Isp~SGHYRPt~enf~~fl~~L~e~ 363 (373)
...|++..... .|.|.- =..|--|..|++-|.+. .+|.+ +-+.-|.-.|.|++ .-..|+++
T Consensus 79 ~v~F~vtD~~~~v~V~Y~Gil------PDlFrEG~gVVveG~~~-~~g~F~A~~vLAKhdekYmPpE-----v~~al~~~ 146 (160)
T PRK13165 79 KVSFTLYDAGGSVTVTYEGIL------PDLFREGQGIVAQGVLE-EGNHIEAKEVLAKHDENYTPPE-----VEEAMKKN 146 (160)
T ss_pred EEEEEEEcCCeEEEEEEcccC------CccccCCCeEEEEEEEC-CCCeEEEEEEEecCCCCCCCHH-----HHHHHHhc
Confidence 35666654322 455542 12466699999999995 56887 44677888999987 33578888
Q ss_pred CCCCCCcc
Q 017344 364 SVDLTNVK 371 (373)
Q Consensus 364 GVDLs~V~ 371 (373)
|..|.-+.
T Consensus 147 ~~~~~~~~ 154 (160)
T PRK13165 147 HRRPAYSY 154 (160)
T ss_pred cCCCCccc
Confidence 88876654
No 39
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=24.58 E-value=2.5e+02 Score=21.39 Aligned_cols=59 Identities=12% Similarity=0.245 Sum_probs=35.8
Q ss_pred eEEEeeCCceEeccCC-Ce--EEEEEcCCCceEEee---ccCCceeeccCCCCCccceeeeEEEe
Q 017344 274 KLVYRQTGMFVNTNED-SK--WIFVLSTSRALYVGQ---KKKGVFQHSSFLSGGAITAAGRLVAH 332 (373)
Q Consensus 274 rL~y~~sG~~vdTt~~-~k--wIFVmdtsg~LYvG~---KkkG~FqHSSFLaGg~V~AAG~I~V~ 332 (373)
.+.|.++|++++.... +. -+++.+.++.|.|.. ...|.+.=.-=...|.+.+...|.|.
T Consensus 18 ~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 82 (85)
T cd04970 18 TFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVR 82 (85)
T ss_pred EEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEE
Confidence 4578889998876432 21 245566778899886 46787763322223445566666654
No 40
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=22.90 E-value=4e+02 Score=27.73 Aligned_cols=72 Identities=13% Similarity=0.010 Sum_probs=44.0
Q ss_pred EEecCeEEEeeCCc----------eEecc---CCCeEEEEEcCCCceEEeeccCCceeeccCCCCCccceeeeEEEecce
Q 017344 269 VVESGKLVYRQTGM----------FVNTN---EDSKWIFVLSTSRALYVGQKKKGVFQHSSFLSGGAITAAGRLVAHDGI 335 (373)
Q Consensus 269 ~IedGrL~y~~sG~----------~vdTt---~~~kwIFVmdtsg~LYvG~KkkG~FqHSSFLaGg~V~AAG~I~V~nG~ 335 (373)
-..+|+++|.++-. +.-+. -.+..+||-+.+|.||+=.++.|...=+ +--|+++.++=.+.+.+|+
T Consensus 372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~-~~~~~~~~a~P~~~~~~g~ 450 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWK-FRTPSGIQATPMTYEVNGK 450 (488)
T ss_pred eCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeE-EECCCCceEcCEEEEeCCE
Confidence 33489999987532 11110 1345799999999999999888865433 2335555444444455666
Q ss_pred eEEEcC
Q 017344 336 LEAIWP 341 (373)
Q Consensus 336 Lk~Isp 341 (373)
+-....
T Consensus 451 ~yv~~~ 456 (488)
T cd00216 451 QYVGVM 456 (488)
T ss_pred EEEEEE
Confidence 555543
No 41
>COG2323 Predicted membrane protein [Function unknown]
Probab=22.29 E-value=30 Score=33.46 Aligned_cols=46 Identities=15% Similarity=0.377 Sum_probs=32.6
Q ss_pred cCCCCCccceeeeEEEecceeEEEcCCCCCCCCCHHHHHHHHHHHHHcCC-CCCCcc
Q 017344 316 SFLSGGAITAAGRLVAHDGILEAIWPYSGHYLPTEENFKEFVSFLEEHSV-DLTNVK 371 (373)
Q Consensus 316 SFLaGg~V~AAG~I~V~nG~Lk~Isp~SGHYRPt~enf~~fl~~L~e~GV-DLs~V~ 371 (373)
.|+.|.|+ +.|+||+|..= +-|-..-+..++...|+++|| ++++|+
T Consensus 88 ~~l~G~P~-----vlI~nGki~e~-----~Lkk~rlt~ddL~~~LR~kgi~~l~dV~ 134 (224)
T COG2323 88 KLLEGKPT-----VLIENGKIDEE-----NLKKSRLTIDDLLMKLRQKGIFDLADVE 134 (224)
T ss_pred HhhcCCCE-----EEEeCCeEcHH-----HHHHhcCCHHHHHHHHHHcCCCcHHHhh
Confidence 48888886 68899998641 112222346678999999998 788776
No 42
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=22.10 E-value=2.5e+02 Score=23.16 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=10.4
Q ss_pred EEEEEcCCCceEEee
Q 017344 292 WIFVLSTSRALYVGQ 306 (373)
Q Consensus 292 wIFVmdtsg~LYvG~ 306 (373)
.-.+|+.+|+|++-.
T Consensus 56 ~~l~l~~dGnLvl~~ 70 (114)
T smart00108 56 CTLTLQSDGNLVLYD 70 (114)
T ss_pred EEEEEeCCCCEEEEe
Confidence 456677778887754
No 43
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=20.59 E-value=3.6e+02 Score=26.44 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=17.9
Q ss_pred CCCCCccceeeeEEEe--cceeEEEcCCCC
Q 017344 317 FLSGGAITAAGRLVAH--DGILEAIWPYSG 344 (373)
Q Consensus 317 FLaGg~V~AAG~I~V~--nG~Lk~Isp~SG 344 (373)
...+.++..-|.+.+. +|.+.+|.+..|
T Consensus 144 ~~~~~~v~~~~~v~~~s~~g~~~al~~~tG 173 (370)
T COG1520 144 YYASPPVVGDGTVYVGTDDGHLYALNADTG 173 (370)
T ss_pred EEecCcEEcCcEEEEecCCCeEEEEEccCC
Confidence 3445566666666666 477777776665
No 44
>PF10384 Scm3: Centromere protein Scm3; InterPro: IPR018465 The centromere protein Scm3 is a non-histone component of centromeric chromatin that binds to CenH3-H4 histones, which are required for kinetochore assembly. Scm3 is required for Cse4 localisation and is required for its centromeric association [, ]. The histone H3 variant Cse4 replaces conventional histone H3 in centromeric chromatin and helps direct the assembly of the kinetochore. In addition, Scm3 has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for G2/M progression []. Scm3 is required to maintain kinetochore function throughout the cell cycle. Scm3 contains a nuclear export signal (NES). The N-terminal region of Scm3 is well conserved and functions as the CenH3-interacting domain, while the C-terminal region is variable in size and sometimes consists of DNA binding motifs [].; GO: 0005634 nucleus; PDB: 3R45_C 2YFV_C 2L5A_A.
Probab=20.56 E-value=48 Score=25.96 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=12.9
Q ss_pred ceeeeEEEecceeEEEcC
Q 017344 324 TAAGRLVAHDGILEAIWP 341 (373)
Q Consensus 324 ~AAG~I~V~nG~Lk~Isp 341 (373)
+..|+|++.||.|+.+.+
T Consensus 39 L~TgeIv~dnGhL~~l~~ 56 (58)
T PF10384_consen 39 LETGEIVVDNGHLRSLRN 56 (58)
T ss_dssp TCCTTEEETTS-EECE--
T ss_pred ccCCeEEEECCEEecccC
Confidence 467889999999998764
No 45
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.05 E-value=90 Score=32.47 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=22.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCC
Q 017344 342 YSGHYLPTEENFKEFVSFLEEHSVDL 367 (373)
Q Consensus 342 ~SGHYRPt~enf~~fl~~L~e~GVDL 367 (373)
.++..+|+.+...+|.+.|+++||..
T Consensus 319 ~~~~~~ps~~~i~~F~~~L~~~gi~v 344 (371)
T PRK14461 319 GTPLGRSERERVTTFQRILTDYGIPC 344 (371)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCceE
Confidence 45778888999999999999999874
Done!