Query 017344
Match_columns 373
No_of_seqs 158 out of 177
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 12:55:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kxw_B Sodium channel protein 96.4 0.0019 6.4E-08 42.5 2.8 22 109-130 4-25 (27)
2 2l53_B CAM, voltage-gated sodi 96.4 0.0018 6.2E-08 43.9 2.7 24 109-132 4-27 (31)
3 2ix7_C Myosin-5A; contractIle 93.3 0.04 1.4E-06 40.1 2.4 36 109-144 3-40 (58)
4 1n2d_C IQ2 and IQ3 motifs from 92.9 0.046 1.6E-06 38.2 2.1 19 111-129 28-46 (48)
5 4dck_A Sodium channel protein 87.3 0.24 8.4E-06 44.4 2.2 23 109-131 128-150 (168)
6 2ix7_C Myosin-5A; contractIle 86.1 0.36 1.2E-05 34.9 2.2 22 110-131 27-48 (58)
7 1n2d_C IQ2 and IQ3 motifs from 82.1 0.56 1.9E-05 32.6 1.6 22 111-132 3-24 (48)
8 3dve_B Voltage-dependent N-typ 65.5 2.4 8.3E-05 27.0 1.3 17 112-128 6-22 (23)
9 3q7m_A Lipoprotein YFGL, BAMB; 64.6 20 0.00068 32.2 7.7 76 271-346 257-340 (376)
10 3ohg_A Uncharacterized protein 61.6 12 0.0004 35.7 5.8 38 263-306 109-146 (285)
11 3dvk_B Voltage-dependent R-typ 60.0 4.6 0.00016 25.7 1.8 17 112-128 7-23 (23)
12 2be1_A Serine/threonine-protei 59.1 15 0.0005 35.5 6.1 96 250-345 7-132 (339)
13 3bxl_B CAM, voltage-dependent 57.5 5.2 0.00018 26.1 1.8 17 113-129 4-20 (26)
14 1kk8_A Myosin heavy chain, str 55.6 6.3 0.00021 42.8 3.1 36 110-145 778-818 (837)
15 2l60_A Peptide YY; GPCR ligand 46.0 17 0.00058 26.0 3.1 29 180-209 12-41 (41)
16 3q7m_A Lipoprotein YFGL, BAMB; 45.4 39 0.0013 30.2 6.2 51 290-340 318-375 (376)
17 2dfs_A Myosin-5A; myosin-V, in 45.1 8.7 0.0003 42.6 2.3 15 112-126 792-806 (1080)
18 2bl0_A Major plasmodial myosin 43.0 15 0.00051 26.9 2.6 21 110-130 29-49 (63)
19 1f8p_A Neuropeptide Y (PNPY); 40.4 9.2 0.00031 26.8 1.0 28 181-209 9-37 (37)
20 1wdc_A Scallop myosin; calcium 38.1 20 0.00068 26.3 2.6 20 110-129 31-50 (64)
21 2dfs_A Myosin-5A; myosin-V, in 37.6 18 0.00063 40.1 3.3 22 110-131 838-859 (1080)
22 3gn4_A Myosin-VI; unconvention 37.0 16 0.00056 32.2 2.3 20 110-129 44-63 (148)
23 1w7j_A Myosin VA; motor protei 36.2 15 0.00051 39.7 2.3 21 110-130 767-787 (795)
24 1kk8_A Myosin heavy chain, str 35.9 14 0.00047 40.1 2.0 27 111-146 805-831 (837)
25 3g43_E Voltage-dependent L-typ 35.8 15 0.00051 29.6 1.7 20 110-129 62-81 (81)
26 3a0c_A Mannose/sialic acid-bin 31.7 1.9E+02 0.0064 22.7 8.6 56 265-321 21-81 (110)
27 1w6s_A Methanol dehydrogenase 30.8 84 0.0029 32.1 6.7 95 251-345 60-193 (599)
28 1yiq_A Quinohemoprotein alcoho 30.5 80 0.0027 32.3 6.5 95 251-345 68-194 (689)
29 2bf9_A Pancreatic hormone; tur 30.5 52 0.0018 22.9 3.5 27 181-208 9-36 (36)
30 3mez_A Mannose-specific lectin 30.5 2E+02 0.0069 22.7 7.7 43 264-307 20-67 (111)
31 3nok_A Glutaminyl cyclase; bet 29.3 1.2E+02 0.004 28.6 6.9 83 263-345 106-212 (268)
32 3htn_A Putative DNA binding pr 28.5 1.6E+02 0.0056 24.8 7.1 74 255-344 57-141 (149)
33 1kb0_A Quinohemoprotein alcoho 28.2 98 0.0033 31.6 6.6 95 251-345 75-201 (677)
34 3no2_A Uncharacterized protein 27.5 1.2E+02 0.0041 26.9 6.3 46 300-346 186-235 (276)
35 2ad6_A Methanol dehydrogenase 27.0 1.7E+02 0.0057 29.3 7.9 95 251-345 60-187 (571)
36 1bba_A Bovine pancreatic polyp 26.5 56 0.0019 22.8 3.0 27 181-208 9-36 (36)
37 1kv9_A Type II quinohemoprotei 26.3 1E+02 0.0035 31.4 6.3 95 251-345 64-189 (668)
38 1qbf_A Peptide YY, PYY; PP-fol 25.3 9 0.00031 26.9 -1.1 28 181-209 9-37 (37)
39 3r0e_A Lectin; carbohydrate bi 25.1 2.5E+02 0.0086 22.1 7.4 42 264-307 21-66 (109)
40 2hz6_A Endoplasmic reticulum t 24.6 59 0.002 30.0 3.9 12 333-344 182-193 (369)
41 2hz6_A Endoplasmic reticulum t 22.1 35 0.0012 31.5 1.9 76 271-346 27-114 (369)
42 4h3o_A Lectin; cadmium, plant 22.1 2.9E+02 0.0098 21.6 8.6 43 265-307 20-68 (105)
43 3m0c_C LDL receptor, low-densi 21.8 2.4E+02 0.0082 29.9 8.3 105 223-344 522-633 (791)
44 2d48_A Interleukin-4; four hel 21.3 63 0.0022 28.0 3.1 29 96-124 28-59 (129)
45 1w6s_A Methanol dehydrogenase 20.7 2.8E+02 0.0097 28.2 8.3 71 266-339 454-532 (599)
46 3m7h_A Putidacin L1; monocot m 20.2 4.4E+02 0.015 24.2 8.9 55 292-350 197-256 (276)
No 1
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=96.44 E-value=0.0019 Score=42.49 Aligned_cols=22 Identities=18% Similarity=0.495 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHhhhhhhhhcc
Q 017344 109 ELDAAATKLQKVYKSYRTRRNL 130 (373)
Q Consensus 109 e~~~AA~~iQk~YRgyRTRR~L 130 (373)
+.+.||++||+.||+|..||.+
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~~~ 25 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQKV 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5678999999999999999865
No 2
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=96.41 E-value=0.0018 Score=43.87 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHhhhhhhhhccCC
Q 017344 109 ELDAAATKLQKVYKSYRTRRNLAD 132 (373)
Q Consensus 109 e~~~AA~~iQk~YRgyRTRR~Lag 132 (373)
+.+-||+.||+.||+|+.||.+..
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~~~~ 27 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRSLKH 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 467899999999999999998754
No 3
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=93.33 E-value=0.04 Score=40.06 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHhhhhhhhhccCCc--ccchHHHHHHH
Q 017344 109 ELDAAATKLQKVYKSYRTRRNLADC--AVVVEELWWKA 144 (373)
Q Consensus 109 e~~~AA~~iQk~YRgyRTRR~Lag~--~v~~~~~Ww~a 144 (373)
....||++||+.||||..|+...-. +++.-+.||..
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg 40 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRG 40 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999876542 34444555544
No 4
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=92.94 E-value=0.046 Score=38.21 Aligned_cols=19 Identities=37% Similarity=0.392 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhhhhhhhc
Q 017344 111 DAAATKLQKVYKSYRTRRN 129 (373)
Q Consensus 111 ~~AA~~iQk~YRgyRTRR~ 129 (373)
+.||++||+.+|||..|+.
T Consensus 28 ~~aai~IQ~~~Rg~~~Rk~ 46 (48)
T 1n2d_C 28 VNCATLLQAAYRGHSIRAN 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHh
Confidence 4599999999999999864
No 5
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=87.31 E-value=0.24 Score=44.39 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHhhhhhhhhccC
Q 017344 109 ELDAAATKLQKVYKSYRTRRNLA 131 (373)
Q Consensus 109 e~~~AA~~iQk~YRgyRTRR~La 131 (373)
....||+.||+.||.|+-||++.
T Consensus 128 ~e~~aA~~IQra~R~~~~r~~~~ 150 (168)
T 4dck_A 128 HEEVSAMVIQRAFRRHLLQRSLK 150 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 46679999999999999987654
No 6
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=86.07 E-value=0.36 Score=34.90 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhhhhhhhccC
Q 017344 110 LDAAATKLQKVYKSYRTRRNLA 131 (373)
Q Consensus 110 ~~~AA~~iQk~YRgyRTRR~La 131 (373)
...||+.||..+|||..|+.+.
T Consensus 27 ~r~aai~IQ~~~Rg~~aR~~~~ 48 (58)
T 2ix7_C 27 MQRAAITVQRYVRGYQARCYAK 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999998754
No 7
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=82.07 E-value=0.56 Score=32.57 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhhhhhhccCC
Q 017344 111 DAAATKLQKVYKSYRTRRNLAD 132 (373)
Q Consensus 111 ~~AA~~iQk~YRgyRTRR~Lag 132 (373)
..||+.||+.+|||-.|++...
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~ 24 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVND 24 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999988643
No 8
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=65.50 E-value=2.4 Score=27.00 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhhhhhh
Q 017344 112 AAATKLQKVYKSYRTRR 128 (373)
Q Consensus 112 ~AA~~iQk~YRgyRTRR 128 (373)
=||..||..||.++.||
T Consensus 6 YAallI~d~~r~~k~~~ 22 (23)
T 3dve_B 6 YAALMIFDFYKQNKTSR 22 (26)
T ss_dssp HHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 48999999999999886
No 9
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=64.59 E-value=20 Score=32.15 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=48.6
Q ss_pred ecCeEEEeeCCce-EeccCCCeEEEEEcCCCceEEeeccCCceeeccC-----CCCCccceeeeEEEe--cceeEEEcCC
Q 017344 271 ESGKLVYRQTGMF-VNTNEDSKWIFVLSTSRALYVGQKKKGVFQHSSF-----LSGGAITAAGRLVAH--DGILEAIWPY 342 (373)
Q Consensus 271 edGrL~y~~sG~~-vdTt~~~kwIFVmdtsg~LYvG~KkkG~FqHSSF-----LaGg~V~AAG~I~V~--nG~Lk~Isp~ 342 (373)
.+|+++|...-.. ....-.+..+||.+.+|.||+=..+.|......- ....++++.|.|.+- +|.|..+.+.
T Consensus 257 ~tG~~~w~~~~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~ 336 (376)
T 3q7m_A 257 RSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVE 336 (376)
T ss_dssp TTCCEEEEECCCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETT
T ss_pred CCCcEEeeccCCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECC
Confidence 3677776654211 1111124568888888888888777776654321 223466677887775 6899999998
Q ss_pred CCCC
Q 017344 343 SGHY 346 (373)
Q Consensus 343 SGHY 346 (373)
+|.-
T Consensus 337 tG~~ 340 (376)
T 3q7m_A 337 DGRF 340 (376)
T ss_dssp TCCE
T ss_pred CCcE
Confidence 8863
No 10
>3ohg_A Uncharacterized protein from DUF2233 family; structural genomics, unknown function, joint center for STRU genomics, JCSG; HET: MSE; 1.80A {Bacteroides ovatus}
Probab=61.55 E-value=12 Score=35.70 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=24.7
Q ss_pred ccceEEEEecCeEEEeeCCceEeccCCCeEEEEEcCCCceEEee
Q 017344 263 REEFEVVVESGKLVYRQTGMFVNTNEDSKWIFVLSTSRALYVGQ 306 (373)
Q Consensus 263 Re~YeV~IedGrL~y~~sG~~vdTt~~~kwIFVmdtsg~LYvG~ 306 (373)
+...-++|+||++++...+. ....+|.++.+|++.|+.
T Consensus 109 ~~P~G~~I~nG~~i~~~~~~------~~~~~f~i~~dG~~~I~~ 146 (285)
T 3ohg_A 109 RRVMGLFYKDGVCINSQYFE------GHDEVLYQLKNGETYVGQ 146 (285)
T ss_dssp TEESSCEEETTEEEECCCCT------TCCEEEEEETTSCEEEEE
T ss_pred CceeEEEEECCEEEecCCCC------CcceEEEEeeCCeEEEEe
Confidence 44555566666666543221 133689999999999986
No 11
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=60.05 E-value=4.6 Score=25.73 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhhhhhhh...
Q 017344 112 AAATKLQKVYKSYRTRR... 128 (373)
Q Consensus 112 ~AA~~iQk~YRgyRTRR... 128 (373)
=||..||..||.++.|+
T Consensus 7 YA~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 7 YAAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHHhccC...
Confidence 48999999999999874
No 12
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=59.07 E-value=15 Score=35.49 Aligned_cols=96 Identities=13% Similarity=0.167 Sum_probs=57.4
Q ss_pred cccccccccCcccccceEEEEecCeEEEeeCCc----eEeccC----CCeEEEEE--cCCCceEEeeccCCcee------
Q 017344 250 LQRQCIKYLGPKEREEFEVVVESGKLVYRQTGM----FVNTNE----DSKWIFVL--STSRALYVGQKKKGVFQ------ 313 (373)
Q Consensus 250 L~~q~VkYLspeERe~YeV~IedGrL~y~~sG~----~vdTt~----~~kwIFVm--dtsg~LYvG~KkkG~Fq------ 313 (373)
++-..+-|++-.+-.-|-+-.++|+++|..... ++.+.. .+..+||. ..+|+||+-....|.-.
T Consensus 7 ~~~~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 7 LSLSDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp SEEEEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred ceeCCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 344555666666666666666689999887653 332211 12357777 46999999875545221
Q ss_pred ---ecc-CC-CCCccc-------eeeeEEE--ecceeEEEcCCCCC
Q 017344 314 ---HSS-FL-SGGAIT-------AAGRLVA--HDGILEAIWPYSGH 345 (373)
Q Consensus 314 ---HSS-FL-aGg~V~-------AAG~I~V--~nG~Lk~Isp~SGH 345 (373)
++| +. .|.||+ .-|.+.+ .+|.|-+|...+|-
T Consensus 87 ~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 87 QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence 222 33 466666 6676665 48999998888774
No 13
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=57.45 E-value=5.2 Score=26.13 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=16.2
Q ss_pred HHHHHHHHhhhhhhhhc
Q 017344 113 AATKLQKVYKSYRTRRN 129 (373)
Q Consensus 113 AA~~iQk~YRgyRTRR~ 129 (373)
||..||-.||.+..||+
T Consensus 4 Aa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 4 AAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 89999999999999987
No 14
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=55.62 E-value=6.3 Score=42.75 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhhhhhhhccCCc-----ccchHHHHHHHH
Q 017344 110 LDAAATKLQKVYKSYRTRRNLADC-----AVVVEELWWKAL 145 (373)
Q Consensus 110 ~~~AA~~iQk~YRgyRTRR~Lag~-----~v~~~~~Ww~al 145 (373)
...+|+.||+.+|||..||+..-. ++..-+++|++.
T Consensus 778 l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~ 818 (837)
T 1kk8_A 778 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKW 818 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999987543 455556666553
No 15
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=46.02 E-value=17 Score=26.01 Aligned_cols=29 Identities=34% Similarity=0.518 Sum_probs=23.9
Q ss_pred hcCCCChHHHHHHH-HHHHHHHhcCCccccc
Q 017344 180 VGKGLSKDENAQKL-ALQHWLEAIDPRHRYG 209 (373)
Q Consensus 180 vgkglsk~~kaq~l-~~qhwLE~iDprHRYG 209 (373)
-|.+.|.++-||=+ +|+|.+.+| -|+|||
T Consensus 12 Pg~~aspEela~Y~~~Lr~Yinlv-TR~RyG 41 (41)
T 2l60_A 12 ELKKLSPEELNRYYASLRHYLNLV-TRQRYX 41 (41)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHH-TTTCC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHh-cccccC
Confidence 47888999998876 799999998 478998
No 16
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=45.38 E-value=39 Score=30.22 Aligned_cols=51 Identities=20% Similarity=0.211 Sum_probs=33.1
Q ss_pred CeEEEEEcCCCceEEeeccCCceeeccCC-----CCCccceeeeEEEe--cceeEEEc
Q 017344 290 SKWIFVLSTSRALYVGQKKKGVFQHSSFL-----SGGAITAAGRLVAH--DGILEAIW 340 (373)
Q Consensus 290 ~kwIFVmdtsg~LYvG~KkkG~FqHSSFL-----aGg~V~AAG~I~V~--nG~Lk~Is 340 (373)
+..+||.+.+|.||+=..+.|.+....-+ ...++.+-|.|.|- +|.|..+.
T Consensus 318 ~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 318 NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 34689999999999988777876543323 23344556666664 57666653
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=45.13 E-value=8.7 Score=42.62 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=7.8
Q ss_pred HHHHHHHHHhhhhhh
Q 017344 112 AAATKLQKVYKSYRT 126 (373)
Q Consensus 112 ~AA~~iQk~YRgyRT 126 (373)
.||+.||+.||||..
T Consensus 792 ~aai~IQ~~~Rg~~a 806 (1080)
T 2dfs_A 792 RAAITIQRYVRGHQA 806 (1080)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555544
No 18
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=42.98 E-value=15 Score=26.90 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhhhhhhhcc
Q 017344 110 LDAAATKLQKVYKSYRTRRNL 130 (373)
Q Consensus 110 ~~~AA~~iQk~YRgyRTRR~L 130 (373)
+..|+..||++.|+|=.+|+-
T Consensus 29 ~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 29 KSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhhccC
Confidence 456888999999999988743
No 19
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=40.36 E-value=9.2 Score=26.82 Aligned_cols=28 Identities=32% Similarity=0.633 Sum_probs=21.9
Q ss_pred cCCCChHHHHHHH-HHHHHHHhcCCccccc
Q 017344 181 GKGLSKDENAQKL-ALQHWLEAIDPRHRYG 209 (373)
Q Consensus 181 gkglsk~~kaq~l-~~qhwLE~iDprHRYG 209 (373)
|.+.+.++-||-+ +|+|.+.+| -|+|||
T Consensus 9 g~~a~pEela~Y~~~Lr~Yinlv-TRqRyG 37 (37)
T 1f8p_A 9 GEDAPAEDLARYYSALRHYINLI-TRQRYX 37 (37)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHH-HHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh-cccccC
Confidence 6677888888876 799999988 478887
No 20
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=38.07 E-value=20 Score=26.26 Aligned_cols=20 Identities=15% Similarity=0.213 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhhhhhhhhc
Q 017344 110 LDAAATKLQKVYKSYRTRRN 129 (373)
Q Consensus 110 ~~~AA~~iQk~YRgyRTRR~ 129 (373)
+..|+..||++.|+|=.+|+
T Consensus 31 ~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 31 QRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 35677789999998888764
No 21
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=37.57 E-value=18 Score=40.10 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhhhhhhhccC
Q 017344 110 LDAAATKLQKVYKSYRTRRNLA 131 (373)
Q Consensus 110 ~~~AA~~iQk~YRgyRTRR~La 131 (373)
...||+.||..+|||..||++.
T Consensus 838 lr~aai~IQs~~Rg~laRr~~~ 859 (1080)
T 2dfs_A 838 MRDATIALQALLRGYLVRNKYQ 859 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777776666554
No 22
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=36.95 E-value=16 Score=32.20 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhhhhhhhc
Q 017344 110 LDAAATKLQKVYKSYRTRRN 129 (373)
Q Consensus 110 ~~~AA~~iQk~YRgyRTRR~ 129 (373)
..+|+++||++-|+|-+||.
T Consensus 44 R~~~~i~iQktvR~~L~rkk 63 (148)
T 3gn4_A 44 RAEACIKMQKTIRMWLCKRR 63 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999865
No 23
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=36.23 E-value=15 Score=39.65 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhhhhhhhcc
Q 017344 110 LDAAATKLQKVYKSYRTRRNL 130 (373)
Q Consensus 110 ~~~AA~~iQk~YRgyRTRR~L 130 (373)
..++|+.||+++|||..||+.
T Consensus 767 l~~~~~~iQ~~~Rg~l~R~~~ 787 (795)
T 1w7j_A 767 LRAACIRIQKTIRGWLMRKKY 787 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999764
No 24
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=35.92 E-value=14 Score=40.11 Aligned_cols=27 Identities=22% Similarity=0.548 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhhhhhhhccCCcccchHHHHHHHHH
Q 017344 111 DAAATKLQKVYKSYRTRRNLADCAVVVEELWWKALD 146 (373)
Q Consensus 111 ~~AA~~iQk~YRgyRTRR~Lag~~v~~~~~Ww~al~ 146 (373)
..||++||+.+|+|..||+-. ||+.+-
T Consensus 805 r~a~~~IQ~~~R~~~~~r~~~---------w~~l~~ 831 (837)
T 1kk8_A 805 RIGLSVIQRNIRKWLVLRNWQ---------WWKLYS 831 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHTCH---------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcchH---------HHHHHh
Confidence 579999999999999998643 888753
No 25
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=35.78 E-value=15 Score=29.62 Aligned_cols=20 Identities=15% Similarity=0.286 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhhhhhhhc
Q 017344 110 LDAAATKLQKVYKSYRTRRN 129 (373)
Q Consensus 110 ~~~AA~~iQk~YRgyRTRR~ 129 (373)
.-=||..||..||.||.|++
T Consensus 62 KiYA~llI~d~~r~~k~r~~ 81 (81)
T 3g43_E 62 KFYATFLIQEYFRKFKKREQ 81 (81)
T ss_dssp CHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 34599999999999999865
No 26
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=31.73 E-value=1.9e+02 Score=22.74 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=34.3
Q ss_pred ceEEEEe-cCeEEEeeCCceEeccC----CCeEEEEEcCCCceEEeeccCCceeeccCCCCC
Q 017344 265 EFEVVVE-SGKLVYRQTGMFVNTNE----DSKWIFVLSTSRALYVGQKKKGVFQHSSFLSGG 321 (373)
Q Consensus 265 ~YeV~Ie-dGrL~y~~sG~~vdTt~----~~kwIFVmdtsg~LYvG~KkkG~FqHSSFLaGg 321 (373)
.|.+.+. ||.|+.-.++.++-.+. ......+|..+|+|.+-.. .|..-=+||..+.
T Consensus 21 ~~~l~~~~dGnlvl~~~~~~vW~sn~~~~~~~~~l~l~~dGNLVl~~~-~~~~~W~S~t~~~ 81 (110)
T 3a0c_A 21 SYRLIMQGDCNFVLYDSGKPVWASNTGGLGSGCRLTLHNNGNLVIYDQ-SNRVIWQTKTNGK 81 (110)
T ss_dssp TEEEEECTTSCEEEEETTEEEEECCCTTSCSSCEEEECTTSCEEEECT-TCCEEEECCCCCS
T ss_pred CEEEEEcCCCcEEEEECCEEEEECCCCCCCCcEEEEEeCCCCEEEECC-CCcEEEecCCCCC
Confidence 4666664 67665333556554332 1235678889999998754 3555567887654
No 27
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=30.76 E-value=84 Score=32.09 Aligned_cols=95 Identities=12% Similarity=0.132 Sum_probs=61.2
Q ss_pred ccccccccCcc-cccceEEEE-ecCeEEEeeCCce-Ee--------------cc--CCC---eEEEEEcCCCceEEeecc
Q 017344 251 QRQCIKYLGPK-EREEFEVVV-ESGKLVYRQTGMF-VN--------------TN--EDS---KWIFVLSTSRALYVGQKK 308 (373)
Q Consensus 251 ~~q~VkYLspe-ERe~YeV~I-edGrL~y~~sG~~-vd--------------Tt--~~~---kwIFVmdtsg~LYvG~Kk 308 (373)
....+.|+.-. ...-|-+-. ++|+++|..+-.. .. +. .++ .-|||.+.++.||+=..+
T Consensus 60 v~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 60 VVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp EETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred EECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence 34455666654 445566666 6899998875221 00 00 111 238999999999998877
Q ss_pred CCceeecc---------CCCCCccceeeeEEEe--------cceeEEEcCCCCC
Q 017344 309 KGVFQHSS---------FLSGGAITAAGRLVAH--------DGILEAIWPYSGH 345 (373)
Q Consensus 309 kG~FqHSS---------FLaGg~V~AAG~I~V~--------nG~Lk~Isp~SGH 345 (373)
.|...-+. -..+.++++-|.+.|- +|.|.++...+|.
T Consensus 140 TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~ 193 (599)
T 1w6s_A 140 TGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGE 193 (599)
T ss_dssp TCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCC
T ss_pred CCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCc
Confidence 77554221 3445677777887774 5899999999996
No 28
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=30.50 E-value=80 Score=32.30 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=59.1
Q ss_pred ccccccccCcccccceEEEEecCeEEEeeCCceEe------------cc--CCCeEEEEEcCCCceEEeeccCCceeec-
Q 017344 251 QRQCIKYLGPKEREEFEVVVESGKLVYRQTGMFVN------------TN--EDSKWIFVLSTSRALYVGQKKKGVFQHS- 315 (373)
Q Consensus 251 ~~q~VkYLspeERe~YeV~IedGrL~y~~sG~~vd------------Tt--~~~kwIFVmdtsg~LYvG~KkkG~FqHS- 315 (373)
....+.|++-....-|-+-..+|+++|..+...-. .. -.+.-|||-+.+|.||+=..+.|...-+
T Consensus 68 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 68 VVDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp EETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 34455666644333333333489999987532100 00 0134689988899999988766754311
Q ss_pred ---------cCCCCCccceeeeEEEe--------cceeEEEcCCCCC
Q 017344 316 ---------SFLSGGAITAAGRLVAH--------DGILEAIWPYSGH 345 (373)
Q Consensus 316 ---------SFLaGg~V~AAG~I~V~--------nG~Lk~Isp~SGH 345 (373)
....+.+++..|.+.|- +|.|..++..+|-
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~ 194 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGK 194 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCc
Confidence 23445677777888774 5789999999886
No 29
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=30.46 E-value=52 Score=22.92 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=21.9
Q ss_pred cCCCChHHHHHHH-HHHHHHHhcCCcccc
Q 017344 181 GKGLSKDENAQKL-ALQHWLEAIDPRHRY 208 (373)
Q Consensus 181 gkglsk~~kaq~l-~~qhwLE~iDprHRY 208 (373)
|.+.+.++-||-. +|+|+|.+|- |+||
T Consensus 9 G~dA~~Eela~Y~~~LrhYiNlvT-RqRy 36 (36)
T 2bf9_A 9 GDDAPVEDLIRFYNDLQQYLNVVT-RHRX 36 (36)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHh-ccCC
Confidence 6778889988866 7999999984 6666
No 30
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=30.45 E-value=2e+02 Score=22.70 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=27.3
Q ss_pred cceEEEEe-cCeEE-EeeCCceEecc--C-CCeEEEEEcCCCceEEeec
Q 017344 264 EEFEVVVE-SGKLV-YRQTGMFVNTN--E-DSKWIFVLSTSRALYVGQK 307 (373)
Q Consensus 264 e~YeV~Ie-dGrL~-y~~sG~~vdTt--~-~~kwIFVmdtsg~LYvG~K 307 (373)
-.|.+.+. ||.|+ |..++ .-.|. . ......+|..+|+|++-..
T Consensus 20 g~~~L~~q~dGnLvl~~~~~-vW~snt~~~~~~~~l~l~~dGNLVl~~~ 67 (111)
T 3mez_A 20 ESAAFVMQGDCNLVLYNEAG-GFQSNTHGRGVDCTLRLNNRGQLEIHSA 67 (111)
T ss_dssp TTEEEEECTTSCEEEECSSC-CEECCCTTSCSSCEEEECTTSCEEEECS
T ss_pred CCEEEEEccCCeEEEECCCC-EEECCcccCCcCEEEEEcCCCcEEEEeC
Confidence 46788874 78776 55555 33221 1 1226778899999998754
No 31
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=29.35 E-value=1.2e+02 Score=28.62 Aligned_cols=83 Identities=13% Similarity=0.098 Sum_probs=47.3
Q ss_pred ccceEEEEecCeE-EEee-CCceEeccC----------CCeEEEEEcCCCceEEeeccCCceeeccCC--CCCccc----
Q 017344 263 REEFEVVVESGKL-VYRQ-TGMFVNTNE----------DSKWIFVLSTSRALYVGQKKKGVFQHSSFL--SGGAIT---- 324 (373)
Q Consensus 263 Re~YeV~IedGrL-~y~~-sG~~vdTt~----------~~kwIFVmdtsg~LYvG~KkkG~FqHSSFL--aGg~V~---- 324 (373)
..-|.+...++++ +|+. +++++.|.. +++++||.|.+++|++=..+..+...+--+ .|.++.
T Consensus 106 ~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNe 185 (268)
T 3nok_A 106 ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINE 185 (268)
T ss_dssp SCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred CEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccc
Confidence 3455555445554 3553 455554431 467888888888888766444444332111 233322
Q ss_pred ---eeeeEEEe---cceeEEEcCCCCC
Q 017344 325 ---AAGRLVAH---DGILEAIWPYSGH 345 (373)
Q Consensus 325 ---AAG~I~V~---nG~Lk~Isp~SGH 345 (373)
+.|+|-+. ...|..|.|.+|-
T Consensus 186 Le~~dG~lyanvw~s~~I~vIDp~TG~ 212 (268)
T 3nok_A 186 LECANGVIYANIWHSSDVLEIDPATGT 212 (268)
T ss_dssp EEEETTEEEEEETTCSEEEEECTTTCB
T ss_pred cEEeCCEEEEEECCCCeEEEEeCCCCc
Confidence 35777764 4678888888874
No 32
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=28.46 E-value=1.6e+02 Score=24.85 Aligned_cols=74 Identities=20% Similarity=0.314 Sum_probs=45.9
Q ss_pred ccccCccccc--------ceEEEEecCeEEEeeCCceEeccCCCeEEEEEcCCCceEEeeccCCceeeccCCCCCcccee
Q 017344 255 IKYLGPKERE--------EFEVVVESGKLVYRQTGMFVNTNEDSKWIFVLSTSRALYVGQKKKGVFQHSSFLSGGAITAA 326 (373)
Q Consensus 255 VkYLspeERe--------~YeV~IedGrL~y~~sG~~vdTt~~~kwIFVmdtsg~LYvG~KkkG~FqHSSFLaGg~V~AA 326 (373)
+.|.+++++. .+|+.--.|.+..+ +|+|.-- -=+-+.|.+|+.+.| | ++.| .|..+
T Consensus 57 l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~-dG~p~~H----lH~sl~~~~G~v~gG--------H--l~~g-~V~~t 120 (149)
T 3htn_A 57 LRFFNPKTKAYDDKTFREQMEISNLTGNISSM-NEQVYLH----LHITVGRSDYSALAG--------H--LLSA-IQNGA 120 (149)
T ss_dssp EEEECTTTCCEEEEEECSCEEEEEEEEEEEEE-TTEEEEE----EEEEEECTTSBEEEE--------E--EEEE-EEEEE
T ss_pred EEccCCCcccceeEEecCceEEEEeEEEEEcc-CCCceEE----EEEEEECCCCCEEeE--------E--eCCC-EEEEE
Confidence 3455655543 44444335777665 7776421 127788999999988 5 6666 88888
Q ss_pred eeEEEe--cceeEE-EcCCCC
Q 017344 327 GRLVAH--DGILEA-IWPYSG 344 (373)
Q Consensus 327 G~I~V~--nG~Lk~-Isp~SG 344 (373)
.+|+|. +|.+.. .+|..|
T Consensus 121 ~Ei~i~~~~~~~~R~~D~~tG 141 (149)
T 3htn_A 121 GEFVVEDYSERISRTYNPDLG 141 (149)
T ss_dssp EEEEEEECCSCCEEEEETTTT
T ss_pred EEEEEEEcCCeeEEeeCCcCC
Confidence 899986 454433 344444
No 33
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=28.19 E-value=98 Score=31.58 Aligned_cols=95 Identities=12% Similarity=0.087 Sum_probs=58.5
Q ss_pred ccccccccCcccccceEEEEecCeEEEeeCCceE-e--------cc-C----CCeEEEEEcCCCceEEeeccCCceeec-
Q 017344 251 QRQCIKYLGPKEREEFEVVVESGKLVYRQTGMFV-N--------TN-E----DSKWIFVLSTSRALYVGQKKKGVFQHS- 315 (373)
Q Consensus 251 ~~q~VkYLspeERe~YeV~IedGrL~y~~sG~~v-d--------Tt-~----~~kwIFVmdtsg~LYvG~KkkG~FqHS- 315 (373)
....+.|+.-....-|-+-.++|+++|..+-..- . .. . .+.-|||.+.++.||+=..+.|...-+
T Consensus 75 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 75 VVDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp EETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 4455567664433333333448999998753210 0 00 0 234689988899999887666643211
Q ss_pred ---------cCCCCCccceeeeEEEe--------cceeEEEcCCCCC
Q 017344 316 ---------SFLSGGAITAAGRLVAH--------DGILEAIWPYSGH 345 (373)
Q Consensus 316 ---------SFLaGg~V~AAG~I~V~--------nG~Lk~Isp~SGH 345 (373)
....+.+++.-|.+.|- +|.|..++..+|.
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~ 201 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGE 201 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred cCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCc
Confidence 23445666667777774 5889999998886
No 34
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=27.50 E-value=1.2e+02 Score=26.86 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=22.6
Q ss_pred CceEEeeccCCceeec---cCCCCC-ccceeeeEEEecceeEEEcCCCCCC
Q 017344 300 RALYVGQKKKGVFQHS---SFLSGG-AITAAGRLVAHDGILEAIWPYSGHY 346 (373)
Q Consensus 300 g~LYvG~KkkG~FqHS---SFLaGg-~V~AAG~I~V~nG~Lk~Isp~SGHY 346 (373)
++|++=..+.|.+-.+ .=+.|. ..--.|.....||.|- |..+-||-
T Consensus 186 ~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~-v~~~~g~~ 235 (276)
T 3no2_A 186 HCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLY-ICNWQGHD 235 (276)
T ss_dssp SEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEE-EEEECTTC
T ss_pred CeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEE-EEeccCcc
Confidence 3455555555655221 111222 2334566666777764 44566774
No 35
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=26.98 E-value=1.7e+02 Score=29.27 Aligned_cols=95 Identities=15% Similarity=0.198 Sum_probs=59.7
Q ss_pred ccccccccCcc-cccceEEEE-ecCeEEEeeCCce------------Eecc--CCCeEEEEEcCCCceEEeeccCCceee
Q 017344 251 QRQCIKYLGPK-EREEFEVVV-ESGKLVYRQTGMF------------VNTN--EDSKWIFVLSTSRALYVGQKKKGVFQH 314 (373)
Q Consensus 251 ~~q~VkYLspe-ERe~YeV~I-edGrL~y~~sG~~------------vdTt--~~~kwIFVmdtsg~LYvG~KkkG~FqH 314 (373)
....+.|+.-. ...-|-+-. ++|+++|..+-.. +... -.+.-+||.+.++.||+=..+.|...-
T Consensus 60 v~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 60 VIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 34555677655 455666666 6899998864211 0000 013468888888999988766664432
Q ss_pred cc---------CCCCCccceeeeEEEe--------cceeEEEcCCCCC
Q 017344 315 SS---------FLSGGAITAAGRLVAH--------DGILEAIWPYSGH 345 (373)
Q Consensus 315 SS---------FLaGg~V~AAG~I~V~--------nG~Lk~Isp~SGH 345 (373)
+. -....+++.-|.+.|- +|.|..+.+.+|.
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred EecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCc
Confidence 11 2344566666777764 5799999999986
No 36
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=26.52 E-value=56 Score=22.78 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=21.8
Q ss_pred cCCCChHHHHHHH-HHHHHHHhcCCcccc
Q 017344 181 GKGLSKDENAQKL-ALQHWLEAIDPRHRY 208 (373)
Q Consensus 181 gkglsk~~kaq~l-~~qhwLE~iDprHRY 208 (373)
|.+.+.++-||-. +|+|.|.+|- |+||
T Consensus 9 G~dA~pEela~Y~~~Lr~YiNlvT-RqRy 36 (36)
T 1bba_A 9 GDNATPEQMAQYAAELRRYINMLT-RPRY 36 (36)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHHHC-CCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh-cccC
Confidence 6778888888865 7999999984 6665
No 37
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=26.27 E-value=1e+02 Score=31.36 Aligned_cols=95 Identities=18% Similarity=0.159 Sum_probs=57.4
Q ss_pred ccccccccCcccccceEEEEecCeEEEeeCCce-Eec---------cC----CCeEEEEEcCCCceEEeeccCCceeec-
Q 017344 251 QRQCIKYLGPKEREEFEVVVESGKLVYRQTGMF-VNT---------NE----DSKWIFVLSTSRALYVGQKKKGVFQHS- 315 (373)
Q Consensus 251 ~~q~VkYLspeERe~YeV~IedGrL~y~~sG~~-vdT---------t~----~~kwIFVmdtsg~LYvG~KkkG~FqHS- 315 (373)
....+.|+.-..-.-|-+-..+|+++|..+-.. ... .. .+.-+||-+.+|.||+=..+.|...-+
T Consensus 64 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 64 FHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp EETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 344556666443322332234899998875321 000 00 134588888889999987666654322
Q ss_pred --------cCCCCCccceeeeEEEe--------cceeEEEcCCCCC
Q 017344 316 --------SFLSGGAITAAGRLVAH--------DGILEAIWPYSGH 345 (373)
Q Consensus 316 --------SFLaGg~V~AAG~I~V~--------nG~Lk~Isp~SGH 345 (373)
....+.+++..|.+.|- +|.|..+.+.+|-
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~ 189 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGK 189 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCc
Confidence 22345677777887774 4789999998885
No 38
>1qbf_A Peptide YY, PYY; PP-fold, pancreatic hormone, , inhibitor/hormone complex; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ru5_A 1ruu_A 2rlk_A 2oop_A 2dez_A 2df0_A
Probab=25.30 E-value=9 Score=26.85 Aligned_cols=28 Identities=32% Similarity=0.635 Sum_probs=19.5
Q ss_pred cCCCChHHHHHHH-HHHHHHHhcCCccccc
Q 017344 181 GKGLSKDENAQKL-ALQHWLEAIDPRHRYG 209 (373)
Q Consensus 181 gkglsk~~kaq~l-~~qhwLE~iDprHRYG 209 (373)
|.+.+.++-||-+ +|+|.+.+| -|+|||
T Consensus 9 g~da~pEela~Y~~~Lr~Yinlv-TR~RyG 37 (37)
T 1qbf_A 9 GEDASPEELSRYYASLRHYLNLV-TRQRYX 37 (37)
T ss_dssp CCSSSSSTTTTTTTGGGHHHHHT-SSSCC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh-cccccC
Confidence 5556666666655 688999888 478887
No 39
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara}
Probab=25.13 E-value=2.5e+02 Score=22.06 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=25.5
Q ss_pred cceEEEEe-cCeEEEeeCCceE--eccC-CCeEEEEEcCCCceEEeec
Q 017344 264 EEFEVVVE-SGKLVYRQTGMFV--NTNE-DSKWIFVLSTSRALYVGQK 307 (373)
Q Consensus 264 e~YeV~Ie-dGrL~y~~sG~~v--dTt~-~~kwIFVmdtsg~LYvG~K 307 (373)
-.|.+.+. ||.|+.-. + .- +|.. ......+|+.+|+|++-..
T Consensus 21 g~~~L~~q~dGNLvl~~-~-~Wssnt~~~~~~~~l~l~~dGnLvl~d~ 66 (109)
T 3r0e_A 21 GDFDLVMQDDCNLVLYN-G-NWQSNTANNGRDCKLTLTDYGELVIKNG 66 (109)
T ss_dssp TTEEEEECTTSCEEEET-T-TEECCCTTSCSSCEEEECTTSCEEEECT
T ss_pred CCEEEEEecCCeEEEEe-C-eEEcCCCCCCCcEEEEEcCCCeEEEEeC
Confidence 46778774 78876321 2 11 1222 1235678899999999754
No 40
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=24.59 E-value=59 Score=30.04 Aligned_cols=12 Identities=33% Similarity=0.529 Sum_probs=5.5
Q ss_pred cceeEEEcCCCC
Q 017344 333 DGILEAIWPYSG 344 (373)
Q Consensus 333 nG~Lk~Isp~SG 344 (373)
||.|..+...+|
T Consensus 182 dg~v~a~d~~tG 193 (369)
T 2hz6_A 182 DGLVVTVDSESG 193 (369)
T ss_dssp SCEEEEECTTTC
T ss_pred CCEEEEEECCCC
Confidence 444444444444
No 41
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=22.11 E-value=35 Score=31.52 Aligned_cols=76 Identities=13% Similarity=0.076 Sum_probs=31.4
Q ss_pred ecCeEEEeeCCceEecc---CCCeEEEEEcCCCceEEeeccCCce------eeccCCCCCccc-eeeeEEE--ecceeEE
Q 017344 271 ESGKLVYRQTGMFVNTN---EDSKWIFVLSTSRALYVGQKKKGVF------QHSSFLSGGAIT-AAGRLVA--HDGILEA 338 (373)
Q Consensus 271 edGrL~y~~sG~~vdTt---~~~kwIFVmdtsg~LYvG~KkkG~F------qHSSFLaGg~V~-AAG~I~V--~nG~Lk~ 338 (373)
.+|+++|......+..+ .+++.+++-+.+|.||+=..+.|.. +........++. .-|.|.+ .||.|..
T Consensus 27 ~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a 106 (369)
T 2hz6_A 27 RTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYV 106 (369)
T ss_dssp TTCCEEEEEECCCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEE
T ss_pred CCCCEEEEecCCCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEE
Confidence 47888877654222211 1333333336788888866444422 111111223333 2222222 4788888
Q ss_pred EcCCCCCC
Q 017344 339 IWPYSGHY 346 (373)
Q Consensus 339 Isp~SGHY 346 (373)
+.+.+|--
T Consensus 107 ~D~~tG~~ 114 (369)
T 2hz6_A 107 IDLLTGEK 114 (369)
T ss_dssp ECCC----
T ss_pred EECCCCcE
Confidence 88888753
No 42
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=22.10 E-value=2.9e+02 Score=21.63 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=29.1
Q ss_pred ceEEEEe-cCeEEEeeCCceEeccC-----CCeEEEEEcCCCceEEeec
Q 017344 265 EFEVVVE-SGKLVYRQTGMFVNTNE-----DSKWIFVLSTSRALYVGQK 307 (373)
Q Consensus 265 ~YeV~Ie-dGrL~y~~sG~~vdTt~-----~~kwIFVmdtsg~LYvG~K 307 (373)
.|.+++. ||-|+.-..+.++-.+. ....-.+|..+|+|.+-..
T Consensus 20 ~y~l~~q~DgNLvly~~~~~vW~ant~~~~~~~~~L~l~~dGnLvL~d~ 68 (105)
T 4h3o_A 20 PYHFIMQDDCNLVLYDHSTSTWASNTEIGGKSGCSAVLQSDGNFVVYDS 68 (105)
T ss_dssp TEEEEECTTSCEEEEETTEEEEECCCCCTTCCSCEEEECTTSCEEEECT
T ss_pred CEEEEECCCCeEEEEECCEEEEEecCCCCCCccEEEEEeCCccEEEECC
Confidence 4888874 88887545666665432 1234678899999988754
No 43
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=21.81 E-value=2.4e+02 Score=29.91 Aligned_cols=105 Identities=15% Similarity=0.197 Sum_probs=0.0
Q ss_pred CCCCCceEEeeccCCccccCCCCCccccccccccccCccc-ccceEEEEe--cCeEEEeeCCceEeccCCCeEEEEEcCC
Q 017344 223 KSTQPFFYWLDVGDGKEVNLEKCPRNVLQRQCIKYLGPKE-REEFEVVVE--SGKLVYRQTGMFVNTNEDSKWIFVLSTS 299 (373)
Q Consensus 223 ~~~~~FfyWLD~GeGk~v~le~cpR~~L~~q~VkYLspeE-Re~YeV~Ie--dGrL~y~~sG~~vdTt~~~kwIFVmdts 299 (373)
+....+.||-|.|.. ...-|..+.-..++-|-... ....-|.|+ +|+|.|.-.+.-. |.+++.+
T Consensus 522 Dp~~g~LYwtD~g~~-----~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~--------I~~~d~d 588 (791)
T 3m0c_C 522 DPVHGFMYWTDWGTP-----AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS--------ISSIDVN 588 (791)
T ss_dssp ETTTTEEEEEECSSS-----CEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE--------EEEEETT
T ss_pred ecCCCCEEEecCCCC-----CeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc--------EEEEecC
Q ss_pred Cc-eEEeeccCCceeeccCCCCCccceeeeEEEec---ceeEEEcCCCC
Q 017344 300 RA-LYVGQKKKGVFQHSSFLSGGAITAAGRLVAHD---GILEAIWPYSG 344 (373)
Q Consensus 300 g~-LYvG~KkkG~FqHSSFLaGg~V~AAG~I~V~n---G~Lk~Isp~SG 344 (373)
|. ..+-....+.++|-. +-++..+.|.+-| +.|..+...+|
T Consensus 589 G~~~~~v~~~~~~l~~P~----glav~~~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 589 GGNRKTILEDEKRLAHPF----SLAVFEDKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp SCSCEEEEECTTTTSSEE----EEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred CCceEEEecCCCccCCCC----EEEEeCCEEEEEECCCCEEEEEeCCCC
No 44
>2d48_A Interleukin-4; four helix bundle, cytokine; 1.65A {Homo sapiens} PDB: 1itl_A 1itm_A 2b90_A 1cyl_A 1hik_A 1iar_A 1rcb_A 2b8u_A 2cyk_A 2int_A 3bpl_A* 3bpn_A* 2b8y_A 1hij_A 1hzi_A 2b8z_A 1bbn_A 1bcn_A 1iti_A 2b8x_A ...
Probab=21.32 E-value=63 Score=28.02 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=24.2
Q ss_pred CCCccccCCCCCchHH---HHHHHHHHHhhhh
Q 017344 96 PEPVVFHSPRPVSELD---AAATKLQKVYKSY 124 (373)
Q Consensus 96 ~~~~~~~~p~~~~e~~---~AA~~iQk~YRgy 124 (373)
+-|.+|..|+-.+|.+ +||+.+++.|..+
T Consensus 28 ~V~Dvfaa~KNttEkE~~CrAatvLrq~Y~~H 59 (129)
T 2d48_A 28 TVTDIFAASKNTTEKETFCRAATVLRQFYSHH 59 (129)
T ss_dssp EEECGGGSCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhccCCCCchHHHHHHHHHHHHHHHHhc
Confidence 3456788899888877 7999999999876
No 45
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=20.66 E-value=2.8e+02 Score=28.17 Aligned_cols=71 Identities=11% Similarity=0.048 Sum_probs=45.6
Q ss_pred eEEEEe--cCeEEEeeC------CceEeccCCCeEEEEEcCCCceEEeeccCCceeeccCCCCCccceeeeEEEecceeE
Q 017344 266 FEVVVE--SGKLVYRQT------GMFVNTNEDSKWIFVLSTSRALYVGQKKKGVFQHSSFLSGGAITAAGRLVAHDGILE 337 (373)
Q Consensus 266 YeV~Ie--dGrL~y~~s------G~~vdTt~~~kwIFVmdtsg~LYvG~KkkG~FqHSSFLaGg~V~AAG~I~V~nG~Lk 337 (373)
..+.|+ .|+++|... +.++.|. +..+|+-+.+|.||+=..+.|..-.+. --|..+.+.-.+...||++-
T Consensus 454 ~l~A~D~~tG~~~W~~~~~~~~~~g~~~ta--gg~vf~gt~dg~l~A~D~~tG~~lW~~-~l~~g~~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 454 QIKAYNAITGDYKWEKMERFAVWGGTMATA--GDLVFYGTLDGYLKARDSDTGDLLWKF-KIPSGAIGYPMTYTHKGTQY 530 (599)
T ss_dssp EEEEECTTTCCEEEEEEESSCCCSBCEEET--TTEEEEECTTSEEEEEETTTCCEEEEE-ECSSCCCSCCEEEEETTEEE
T ss_pred eEEEEECCCCCEEeEecCCCCccCcceEec--CCEEEEECCCCeEEEEECCCCCEEEEe-eCCCCcEeccEEEEeCCEEE
Confidence 344565 799999873 2344443 347999999999999998888766543 23344444444444677654
Q ss_pred EE
Q 017344 338 AI 339 (373)
Q Consensus 338 ~I 339 (373)
..
T Consensus 531 v~ 532 (599)
T 1w6s_A 531 VA 532 (599)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 46
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A*
Probab=20.15 E-value=4.4e+02 Score=24.17 Aligned_cols=55 Identities=18% Similarity=0.061 Sum_probs=31.5
Q ss_pred EEEEEcCCCceEEeeccCCceeeccCCCCCccceeeeEEEe-cceeEEEcC----CCCCCCCCH
Q 017344 292 WIFVLSTSRALYVGQKKKGVFQHSSFLSGGAITAAGRLVAH-DGILEAIWP----YSGHYLPTE 350 (373)
Q Consensus 292 wIFVmdtsg~LYvG~KkkG~FqHSSFLaGg~V~AAG~I~V~-nG~Lk~Isp----~SGHYRPt~ 350 (373)
...+|+.+|+|++-... +..-=+|+..+... =++++. ||.|+.-.. .|.-|.|+.
T Consensus 197 ~~l~l~~dGnLvl~d~~-~~~vWsS~t~~~~~---~rl~Ld~dGnLvly~~~~~Wqsf~~~P~~ 256 (276)
T 3m7h_A 197 VRAVFQGDGNLVVYGAG-NAVLWHSHTGGHAS---AVLRLQANGSIAILDEKPVWARFGFQPTY 256 (276)
T ss_dssp CEEEECTTSCEEEECTT-SCEEEECSCTTCTT---CEEEECTTSCEEEEEEEEEEESSSCCTTS
T ss_pred EEEEEcCCCeEEEEeCC-CcEEEEecCCCCCC---EEEEEcCCccEEEEcCCCeEEccCccCCc
Confidence 56788889998887543 23334555554321 245554 577664432 456667764
Done!