Query 017347
Match_columns 373
No_of_seqs 337 out of 1685
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:46:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017347.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017347hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1118 Lysophosphatidic acid 100.0 9.3E-58 2E-62 425.7 25.5 315 11-365 1-365 (366)
2 cd07607 BAR_SH3P_plant The Bin 100.0 4.1E-56 8.8E-61 388.3 24.8 208 48-256 1-208 (209)
3 KOG3725 SH3 domain protein SH3 100.0 1.7E-49 3.7E-54 362.7 23.8 317 4-361 5-374 (375)
4 cd07617 BAR_Endophilin_B2 The 100.0 8.3E-38 1.8E-42 286.4 20.2 195 20-258 1-220 (220)
5 cd07613 BAR_Endophilin_A1 The 100.0 1.3E-37 2.9E-42 286.2 21.0 181 48-260 7-218 (223)
6 cd07594 BAR_Endophilin_B The B 100.0 1.8E-37 4E-42 287.7 21.4 202 25-258 1-229 (229)
7 cd07616 BAR_Endophilin_B1 The 100.0 2.1E-37 4.6E-42 286.2 21.6 203 20-258 1-229 (229)
8 cd07615 BAR_Endophilin_A3 The 100.0 1.5E-36 3.3E-41 279.5 21.2 180 49-260 8-218 (223)
9 cd07614 BAR_Endophilin_A2 The 100.0 2.4E-36 5.1E-41 278.5 21.1 181 48-260 7-218 (223)
10 cd07592 BAR_Endophilin_A The B 100.0 1.6E-34 3.4E-39 267.5 21.5 191 34-260 6-218 (223)
11 cd07593 BAR_MUG137_fungi The B 100.0 5E-34 1.1E-38 262.7 21.9 197 34-260 6-210 (215)
12 cd07619 BAR_Rich2 The Bin/Amph 100.0 6.9E-30 1.5E-34 238.4 22.6 189 49-260 16-230 (248)
13 cd07595 BAR_RhoGAP_Rich-like T 100.0 2.2E-29 4.8E-34 236.6 23.1 197 49-270 16-233 (244)
14 cd07618 BAR_Rich1 The Bin/Amph 100.0 2.1E-28 4.6E-33 228.8 23.1 188 49-260 16-228 (246)
15 cd07600 BAR_Gvp36 The Bin/Amph 99.9 1.4E-25 3.1E-30 210.1 18.5 152 87-257 82-241 (242)
16 cd07620 BAR_SH3BP1 The Bin/Amp 99.9 1.1E-22 2.5E-27 189.0 22.2 186 47-260 17-239 (257)
17 smart00721 BAR BAR domain. 99.8 6E-19 1.3E-23 164.7 23.0 224 11-259 2-238 (239)
18 PF03114 BAR: BAR domain; Int 99.8 2.2E-17 4.7E-22 151.7 20.7 218 11-258 1-228 (229)
19 KOG3771 Amphiphysin [Intracell 99.7 2.6E-14 5.7E-19 142.1 26.5 222 8-259 3-228 (460)
20 cd07307 BAR The Bin/Amphiphysi 99.7 1.1E-14 2.3E-19 129.6 19.9 186 62-255 7-192 (194)
21 PF10455 BAR_2: Bin/amphiphysi 99.5 2.8E-13 6.1E-18 129.6 17.8 155 87-258 125-287 (289)
22 PF14604 SH3_9: Variant SH3 do 99.5 1.3E-14 2.9E-19 103.3 5.6 49 311-359 1-49 (49)
23 PF07653 SH3_2: Variant SH3 do 99.4 6.8E-13 1.5E-17 96.7 5.8 53 308-360 1-54 (55)
24 KOG2856 Adaptor protein PACSIN 99.4 2.8E-10 6.1E-15 109.9 23.6 55 307-361 415-471 (472)
25 KOG0162 Myosin class I heavy c 99.2 7.2E-12 1.6E-16 129.4 6.2 56 305-360 1050-1105(1106)
26 KOG2070 Guanine nucleotide exc 99.2 4.1E-12 8.9E-17 126.4 3.8 56 306-361 17-72 (661)
27 KOG2199 Signal transducing ada 99.2 2.7E-12 6E-17 124.9 1.4 59 304-362 213-271 (462)
28 PF00018 SH3_1: SH3 domain; I 99.2 2.1E-11 4.6E-16 86.2 5.3 46 310-355 1-48 (48)
29 smart00326 SH3 Src homology 3 99.2 5.6E-11 1.2E-15 85.5 6.4 55 307-361 3-58 (58)
30 KOG1029 Endocytic adaptor prot 99.2 1.8E-09 3.8E-14 112.4 19.4 58 305-362 692-751 (1118)
31 cd07606 BAR_SFC_plant The Bin/ 99.2 4.5E-09 9.7E-14 96.5 19.7 157 87-255 40-200 (202)
32 cd00174 SH3 Src homology 3 dom 99.1 1.3E-10 2.8E-15 82.6 6.1 51 309-359 2-53 (54)
33 KOG4226 Adaptor protein NCK/Do 99.1 8.5E-11 1.8E-15 109.6 6.2 57 308-364 109-165 (379)
34 KOG1029 Endocytic adaptor prot 99.1 3.9E-11 8.5E-16 124.5 4.2 55 307-361 1054-1108(1118)
35 cd07590 BAR_Bin3 The Bin/Amphi 99.1 1.3E-08 2.8E-13 94.9 20.7 190 58-260 25-214 (225)
36 cd07603 BAR_ACAPs The Bin/Amph 99.1 1.4E-08 3.1E-13 93.1 20.2 156 87-255 41-197 (200)
37 cd07588 BAR_Amphiphysin The Bi 99.1 1.3E-08 2.7E-13 94.1 19.9 180 59-260 27-208 (211)
38 cd07604 BAR_ASAPs The Bin/Amph 99.1 1.3E-08 2.7E-13 94.4 19.6 197 40-258 7-212 (215)
39 cd07639 BAR_ACAP1 The Bin/Amph 99.1 1.7E-08 3.6E-13 92.3 19.8 157 87-255 41-197 (200)
40 KOG4225 Sorbin and SH3 domain- 99.1 1.8E-10 3.9E-15 113.6 6.3 57 307-363 231-287 (489)
41 cd07612 BAR_Bin2 The Bin/Amphi 99.1 1.9E-08 4.2E-13 92.5 18.8 182 58-260 26-208 (211)
42 cd07634 BAR_GAP10-like The Bin 99.0 2.4E-08 5.1E-13 91.6 18.9 160 87-255 41-204 (207)
43 cd07602 BAR_RhoGAP_OPHN1-like 99.0 2E-07 4.4E-12 85.6 23.8 192 41-255 8-204 (207)
44 KOG2996 Rho guanine nucleotide 99.0 8.8E-10 1.9E-14 111.8 8.8 60 304-363 803-864 (865)
45 cd07637 BAR_ACAP3 The Bin/Amph 99.0 1.7E-07 3.7E-12 86.0 21.9 157 87-255 41-197 (200)
46 cd07601 BAR_APPL The Bin/Amphi 99.0 8.7E-08 1.9E-12 88.6 19.5 164 87-259 41-208 (215)
47 KOG4348 Adaptor protein CMS/SE 99.0 3.1E-10 6.8E-15 111.6 3.4 57 306-362 261-319 (627)
48 cd07642 BAR_ASAP2 The Bin/Amph 98.9 8.9E-08 1.9E-12 87.8 18.5 162 82-258 43-212 (215)
49 cd07638 BAR_ACAP2 The Bin/Amph 98.9 1E-07 2.2E-12 87.2 18.7 154 87-255 41-197 (200)
50 KOG4348 Adaptor protein CMS/SE 98.9 2E-10 4.2E-15 113.0 0.7 60 303-362 97-156 (627)
51 cd07635 BAR_GRAF2 The Bin/Amph 98.9 2.7E-07 5.9E-12 84.7 20.7 140 107-255 65-204 (207)
52 cd07636 BAR_GRAF The Bin/Amphi 98.9 2.3E-07 4.9E-12 85.2 18.3 184 61-255 15-204 (207)
53 cd07611 BAR_Amphiphysin_I_II T 98.8 5.6E-07 1.2E-11 82.8 19.6 179 59-259 27-207 (211)
54 PF06456 Arfaptin: Arfaptin-li 98.8 4.7E-06 1E-10 78.1 23.9 225 9-251 3-229 (229)
55 KOG2546 Abl interactor ABI-1, 98.8 1E-08 2.3E-13 101.0 6.3 56 307-362 424-479 (483)
56 KOG4225 Sorbin and SH3 domain- 98.8 7.3E-09 1.6E-13 102.4 5.0 55 306-360 432-488 (489)
57 cd07598 BAR_FAM92 The Bin/Amph 98.7 1.2E-05 2.7E-10 74.4 24.7 185 48-260 18-204 (211)
58 cd07641 BAR_ASAP1 The Bin/Amph 98.7 2E-06 4.4E-11 78.6 18.3 160 84-258 45-212 (215)
59 KOG4226 Adaptor protein NCK/Do 98.7 1.1E-08 2.5E-13 95.6 3.7 62 306-367 191-255 (379)
60 cd07591 BAR_Rvs161p The Bin/Am 98.7 4.8E-06 1E-10 77.9 21.2 186 58-260 25-213 (224)
61 KOG3655 Drebrins and related a 98.7 1.8E-08 4E-13 100.7 4.8 56 306-361 427-483 (484)
62 KOG1264 Phospholipase C [Lipid 98.6 2.4E-08 5.3E-13 104.7 3.2 60 305-364 773-833 (1267)
63 cd07631 BAR_APPL1 The Bin/Amph 98.6 9.5E-06 2.1E-10 74.5 19.4 163 87-258 41-207 (215)
64 PF08397 IMD: IRSp53/MIM homol 98.6 4.1E-05 8.9E-10 71.3 23.7 194 47-260 9-210 (219)
65 cd07633 BAR_OPHN1 The Bin/Amph 98.5 1.1E-05 2.4E-10 73.6 18.4 156 87-255 41-204 (207)
66 KOG4792 Crk family adapters [S 98.5 2.3E-08 5E-13 91.3 1.1 62 306-367 124-186 (293)
67 cd07640 BAR_ASAP3 The Bin/Amph 98.5 1.1E-05 2.5E-10 72.9 17.7 170 77-257 31-209 (213)
68 cd07632 BAR_APPL2 The Bin/Amph 98.5 9.2E-06 2E-10 74.1 16.0 163 87-258 41-206 (215)
69 KOG1702 Nebulin repeat protein 98.4 2.6E-07 5.6E-12 83.3 4.0 55 307-361 208-264 (264)
70 KOG0515 p53-interacting protei 98.4 3.2E-07 7E-12 92.8 4.6 57 308-364 685-744 (752)
71 KOG3601 Adaptor protein GRB2, 98.3 4.8E-07 1E-11 82.2 4.7 58 304-361 161-218 (222)
72 cd07596 BAR_SNX The Bin/Amphip 98.3 0.0002 4.3E-09 65.4 22.0 199 47-255 10-216 (218)
73 KOG3875 Peroxisomal biogenesis 98.3 1.4E-07 3E-12 89.9 -0.0 57 307-363 269-332 (362)
74 KOG4429 Uncharacterized conser 98.2 8.2E-05 1.8E-09 70.7 17.1 55 307-361 364-418 (421)
75 cd07605 I-BAR_IMD Inverse (I)- 98.2 0.0012 2.5E-08 61.8 24.5 197 47-260 19-221 (223)
76 cd00011 BAR_Arfaptin_like The 98.2 0.00056 1.2E-08 62.8 21.7 165 81-255 37-201 (203)
77 PF09325 Vps5: Vps5 C terminal 98.2 0.00093 2E-08 62.3 23.6 163 87-255 63-234 (236)
78 cd07589 BAR_DNMBP The Bin/Amph 98.2 0.00012 2.5E-09 67.1 17.0 138 89-251 47-186 (195)
79 KOG3523 Putative guanine nucle 98.2 1.9E-07 4.2E-12 95.7 -1.5 59 305-363 607-667 (695)
80 KOG4792 Crk family adapters [S 98.2 7.2E-06 1.6E-10 75.3 8.0 63 302-364 223-287 (293)
81 KOG1843 Uncharacterized conser 98.1 1E-06 2.2E-11 86.8 2.3 54 307-360 417-472 (473)
82 cd07660 BAR_Arfaptin The Bin/A 98.1 0.001 2.2E-08 60.9 21.2 162 82-256 38-199 (201)
83 PF06730 FAM92: FAM92 protein; 98.1 0.0017 3.7E-08 60.0 22.3 159 85-260 48-211 (219)
84 cd07659 BAR_PICK1 The Bin/Amph 98.1 0.0018 3.9E-08 59.2 21.6 161 87-252 41-208 (215)
85 KOG3876 Arfaptin and related p 98.1 0.0015 3.3E-08 61.4 21.5 205 18-259 108-325 (341)
86 cd07623 BAR_SNX1_2 The Bin/Amp 98.1 0.004 8.6E-08 58.2 24.6 200 34-256 10-221 (224)
87 cd07624 BAR_SNX7_30 The Bin/Am 98.0 0.00076 1.6E-08 62.0 19.2 129 106-254 67-197 (200)
88 cd07643 I-BAR_IMD_MIM Inverse 98.0 0.0018 3.9E-08 60.0 20.8 157 88-247 48-210 (231)
89 cd07599 BAR_Rvs167p The Bin/Am 98.0 0.0017 3.6E-08 60.3 20.9 139 109-253 71-211 (216)
90 KOG2222 Uncharacterized conser 97.9 1.2E-06 2.7E-11 87.7 -1.2 59 304-362 546-604 (848)
91 cd07664 BAR_SNX2 The Bin/Amphi 97.9 0.015 3.2E-07 54.8 25.4 201 34-256 20-231 (234)
92 KOG4278 Protein tyrosine kinas 97.9 1.4E-05 2.9E-10 83.2 4.5 57 305-362 89-147 (1157)
93 cd07627 BAR_Vps5p The Bin/Amph 97.8 0.016 3.4E-07 53.8 24.6 164 87-255 43-214 (216)
94 KOG2528 Sorting nexin SNX9/SH3 97.8 6.9E-06 1.5E-10 81.9 1.3 60 308-367 4-65 (490)
95 cd07625 BAR_Vps17p The Bin/Amp 97.8 0.011 2.3E-07 55.6 22.3 216 20-255 4-228 (230)
96 KOG4773 NADPH oxidase [Energy 97.7 6E-06 1.3E-10 80.0 -1.6 62 305-366 174-235 (386)
97 KOG1451 Oligophrenin-1 and rel 97.6 5.8E-05 1.3E-09 77.6 4.7 100 60-161 32-136 (812)
98 cd07666 BAR_SNX7 The Bin/Amphi 97.6 0.06 1.3E-06 51.0 24.1 134 105-254 106-240 (243)
99 cd07628 BAR_Atg24p The Bin/Amp 97.5 0.065 1.4E-06 48.7 22.9 139 88-254 44-182 (185)
100 cd07665 BAR_SNX1 The Bin/Amphi 97.5 0.027 5.8E-07 53.1 20.7 147 105-255 76-230 (234)
101 cd07622 BAR_SNX4 The Bin/Amphi 97.4 0.014 3E-07 53.8 17.5 150 88-257 47-199 (201)
102 cd07629 BAR_Atg20p The Bin/Amp 97.3 0.089 1.9E-06 47.9 21.5 141 88-256 45-186 (187)
103 KOG0521 Putative GTPase activa 97.3 0.0071 1.5E-07 66.1 16.2 116 87-206 60-175 (785)
104 cd07630 BAR_SNX_like The Bin/A 97.3 0.14 3.1E-06 47.0 22.6 188 34-252 2-193 (198)
105 KOG3557 Epidermal growth facto 97.3 0.00014 3E-09 75.6 2.5 59 305-364 499-558 (721)
106 cd07663 BAR_SNX5 The Bin/Amphi 96.9 0.35 7.6E-06 45.0 24.8 177 33-242 20-201 (218)
107 KOG3632 Peripheral benzodiazep 96.9 0.0012 2.6E-08 71.6 5.1 55 307-361 1139-1202(1335)
108 cd07662 BAR_SNX6 The Bin/Amphi 96.9 0.38 8.2E-06 44.7 22.0 94 34-145 21-116 (218)
109 KOG4575 TGc (transglutaminase/ 96.8 0.0014 3E-08 68.2 4.8 56 306-361 8-65 (874)
110 KOG3565 Cdc42-interacting prot 96.8 0.00079 1.7E-08 71.7 2.8 60 303-362 575-637 (640)
111 cd07651 F-BAR_PombeCdc15_like 96.8 0.37 7.9E-06 45.2 20.4 91 47-145 4-96 (236)
112 cd07646 I-BAR_IMD_IRSp53 Inver 96.6 0.59 1.3E-05 43.6 24.5 197 47-260 21-224 (232)
113 KOG0197 Tyrosine kinases [Sign 96.6 0.001 2.2E-08 68.1 2.1 56 306-361 11-69 (468)
114 cd07674 F-BAR_FCHO1 The F-BAR 96.6 0.56 1.2E-05 44.8 20.8 90 47-145 4-95 (261)
115 KOG0609 Calcium/calmodulin-dep 96.5 0.001 2.2E-08 68.3 1.2 54 307-360 215-280 (542)
116 cd07673 F-BAR_FCHO2 The F-BAR 96.4 0.92 2E-05 43.6 21.6 91 47-146 11-103 (269)
117 cd07667 BAR_SNX30 The Bin/Amph 96.4 0.88 1.9E-05 43.0 22.4 127 105-254 103-237 (240)
118 cd07653 F-BAR_CIP4-like The F- 96.4 0.9 2E-05 42.8 21.5 66 106-173 62-128 (251)
119 cd07658 F-BAR_NOSTRIN The F-BA 96.4 0.5 1.1E-05 44.6 18.7 94 47-146 4-99 (239)
120 cd07661 BAR_ICA69 The Bin/Amph 96.4 0.64 1.4E-05 42.5 18.2 166 80-256 36-202 (204)
121 cd07621 BAR_SNX5_6 The Bin/Amp 96.3 0.9 2E-05 42.4 25.7 94 34-145 22-117 (219)
122 KOG3775 Mitogen-activated prot 96.3 0.0022 4.7E-08 63.1 2.1 56 307-362 263-320 (482)
123 cd07645 I-BAR_IMD_BAIAP2L1 Inv 96.3 0.99 2.1E-05 41.9 24.1 195 46-260 18-222 (226)
124 cd07649 F-BAR_GAS7 The F-BAR ( 96.2 1.1 2.5E-05 42.1 20.1 92 47-146 4-97 (233)
125 cd07648 F-BAR_FCHO The F-BAR ( 96.2 1.2 2.7E-05 42.3 20.9 193 47-250 4-216 (261)
126 KOG1451 Oligophrenin-1 and rel 96.2 0.34 7.3E-06 50.8 17.2 21 230-250 196-216 (812)
127 KOG3601 Adaptor protein GRB2, 96.1 0.00097 2.1E-08 61.0 -1.4 52 309-360 3-55 (222)
128 cd07594 BAR_Endophilin_B The B 96.0 0.11 2.4E-06 48.8 11.8 137 20-167 1-157 (229)
129 KOG3632 Peripheral benzodiazep 95.8 0.014 3E-07 63.7 5.9 56 307-362 448-511 (1335)
130 cd07657 F-BAR_Fes_Fer The F-BA 95.8 1.8 3.9E-05 40.9 20.0 49 103-153 59-107 (237)
131 cd07655 F-BAR_PACSIN The F-BAR 95.7 2 4.3E-05 41.0 19.9 39 106-144 61-99 (258)
132 KOG0040 Ca2+-binding actin-bun 95.7 0.088 1.9E-06 60.0 11.2 60 305-364 967-1026(2399)
133 cd07675 F-BAR_FNBP1L The F-BAR 95.6 2.2 4.7E-05 40.7 20.4 198 48-258 5-215 (252)
134 cd07615 BAR_Endophilin_A3 The 94.9 0.45 9.7E-06 44.5 12.0 122 34-166 6-151 (223)
135 cd07644 I-BAR_IMD_BAIAP2L2 Inv 94.8 3.2 7E-05 38.2 21.3 188 48-259 20-212 (215)
136 cd07592 BAR_Endophilin_A The B 94.5 1.1 2.3E-05 42.0 13.5 100 48-151 7-121 (223)
137 cd07626 BAR_SNX9_like The Bin/ 94.3 4.3 9.3E-05 37.4 19.4 146 87-254 44-195 (199)
138 cd07597 BAR_SNX8 The Bin/Amphi 94.1 5.4 0.00012 37.8 21.4 193 47-256 28-244 (246)
139 cd07676 F-BAR_FBP17 The F-BAR 94.1 5.6 0.00012 37.9 19.8 36 116-153 74-109 (253)
140 smart00721 BAR BAR domain. 94.1 4.8 0.0001 37.0 18.3 94 106-206 99-192 (239)
141 cd07593 BAR_MUG137_fungi The B 93.9 5.4 0.00012 37.2 16.6 169 49-252 8-188 (215)
142 PF14603 hSH3: Helically-exten 93.7 0.1 2.2E-06 41.4 4.2 43 319-361 29-72 (89)
143 PF08239 SH3_3: Bacterial SH3 93.5 0.15 3.2E-06 36.3 4.4 36 324-359 18-55 (55)
144 KOG0199 ACK and related non-re 93.4 0.067 1.5E-06 57.3 3.5 48 312-359 380-430 (1039)
145 cd07610 FCH_F-BAR The Extended 92.7 7 0.00015 34.8 20.4 41 105-145 53-93 (191)
146 cd07609 BAR_SIP3_fungi The Bin 92.6 4.5 9.7E-05 37.7 14.0 64 103-167 56-120 (214)
147 cd07647 F-BAR_PSTPIP The F-BAR 92.2 10 0.00022 35.6 19.2 90 47-145 4-95 (239)
148 cd07686 F-BAR_Fer The F-BAR (F 91.7 12 0.00026 35.3 20.4 109 84-203 38-153 (234)
149 cd07681 F-BAR_PACSIN3 The F-BA 91.7 13 0.00028 35.6 21.9 152 106-260 61-255 (258)
150 KOG3812 L-type voltage-depende 91.6 0.091 2E-06 51.5 1.6 35 321-355 80-117 (475)
151 cd07671 F-BAR_PSTPIP1 The F-BA 91.4 13 0.00028 35.2 19.1 89 46-145 3-95 (242)
152 smart00287 SH3b Bacterial SH3 90.5 0.4 8.8E-06 34.8 3.9 35 324-358 26-61 (63)
153 PRK10884 SH3 domain-containing 90.1 0.3 6.5E-06 45.2 3.5 38 324-361 49-88 (206)
154 cd07685 F-BAR_Fes The F-BAR (F 89.8 18 0.00039 34.1 16.9 28 192-219 162-189 (237)
155 PF15290 Syntaphilin: Golgi-lo 89.8 2.6 5.7E-05 40.4 9.5 19 134-157 57-75 (305)
156 cd07672 F-BAR_PSTPIP2 The F-BA 89.8 18 0.00039 34.2 17.8 88 47-145 4-96 (240)
157 KOG2996 Rho guanine nucleotide 89.5 0.21 4.5E-06 52.2 2.1 59 307-365 605-672 (865)
158 cd07652 F-BAR_Rgd1 The F-BAR ( 88.6 21 0.00047 33.5 20.6 92 52-153 13-106 (234)
159 PF06347 SH3_4: Bacterial SH3 86.3 1.4 3E-05 31.5 4.2 35 323-358 19-53 (55)
160 KOG2273 Membrane coat complex 84.1 58 0.0013 34.0 19.7 66 106-173 330-396 (503)
161 cd07669 BAR_SNX33 The Bin/Amph 82.5 41 0.00089 31.1 16.2 68 87-154 52-123 (207)
162 cd07617 BAR_Endophilin_B2 The 82.1 30 0.00065 32.4 12.2 126 34-167 16-157 (220)
163 KOG3705 Glycoprotein 6-alpha-L 81.3 1.3 2.8E-05 44.6 3.0 53 308-360 511-565 (580)
164 KOG4384 Uncharacterized SAM do 80.9 2.3 5E-05 42.1 4.6 55 307-361 137-193 (361)
165 cd07680 F-BAR_PACSIN1 The F-BA 80.6 55 0.0012 31.3 21.1 153 106-259 61-254 (258)
166 cd07307 BAR The Bin/Amphiphysi 79.9 38 0.00083 29.1 17.2 17 190-206 134-150 (194)
167 cd07657 F-BAR_Fes_Fer The F-BA 79.5 56 0.0012 30.8 20.5 115 87-220 76-190 (237)
168 cd07679 F-BAR_PACSIN2 The F-BA 79.1 62 0.0013 31.0 19.3 69 192-260 183-255 (258)
169 KOG3651 Protein kinase C, alph 76.9 79 0.0017 31.1 13.9 151 87-255 171-341 (429)
170 PF11302 DUF3104: Protein of u 74.2 3.7 8.1E-05 31.7 3.1 25 322-346 3-33 (75)
171 cd07614 BAR_Endophilin_A2 The 74.0 56 0.0012 30.6 11.5 125 34-166 6-151 (223)
172 cd07686 F-BAR_Fer The F-BAR (F 71.6 92 0.002 29.4 17.9 83 152-244 129-211 (234)
173 cd07668 BAR_SNX9 The Bin/Amphi 71.4 87 0.0019 29.1 15.5 68 87-154 52-123 (210)
174 cd07618 BAR_Rich1 The Bin/Amph 71.1 79 0.0017 30.1 11.9 168 36-217 16-198 (246)
175 COG3103 SH3 domain protein [Si 70.5 6 0.00013 36.6 4.1 37 324-360 49-87 (205)
176 cd07616 BAR_Endophilin_B1 The 70.5 6.2 0.00014 37.1 4.3 126 34-167 16-157 (229)
177 cd07650 F-BAR_Syp1p_like The F 70.0 95 0.0021 28.9 19.3 41 106-146 59-99 (228)
178 cd07596 BAR_SNX The Bin/Amphip 70.0 81 0.0018 28.1 22.0 58 88-152 37-98 (218)
179 cd07670 BAR_SNX18 The Bin/Amph 68.5 1E+02 0.0022 28.6 15.1 68 87-154 52-123 (207)
180 PRK13914 invasion associated s 66.9 7.9 0.00017 40.3 4.5 38 324-361 104-142 (481)
181 TIGR01834 PHA_synth_III_E poly 61.3 28 0.00062 34.3 7.0 90 49-144 177-291 (320)
182 PF12913 SH3_6: SH3 domain of 58.6 18 0.0004 26.2 3.9 32 324-355 22-54 (54)
183 PRK04778 septation ring format 58.6 2.5E+02 0.0055 29.9 15.9 130 106-251 99-228 (569)
184 smart00743 Agenet Tudor-like d 57.8 13 0.00029 26.8 3.2 23 324-346 2-24 (61)
185 PF10456 BAR_3_WASP_bdg: WASP- 55.5 1.9E+02 0.0041 27.4 16.5 42 87-128 81-125 (237)
186 KOG2008 BTK-associated SH3-dom 54.0 2.3E+02 0.005 28.0 21.7 101 34-146 26-131 (426)
187 PF06160 EzrA: Septation ring 53.8 3E+02 0.0066 29.3 17.9 132 106-253 95-226 (560)
188 KOG3208 SNARE protein GS28 [In 51.5 49 0.0011 30.9 6.4 17 2-18 8-24 (231)
189 PF09325 Vps5: Vps5 C terminal 51.2 1.9E+02 0.0042 26.3 19.0 52 88-144 57-110 (236)
190 KOG0971 Microtubule-associated 50.4 4.3E+02 0.0093 30.1 18.6 100 87-219 350-453 (1243)
191 KOG1853 LIS1-interacting prote 50.3 2.4E+02 0.0052 27.1 14.4 24 123-146 16-42 (333)
192 KOG4270 GTPase-activator prote 47.0 3.7 8E-05 43.6 -1.7 142 107-256 2-148 (577)
193 PF13805 Pil1: Eisosome compon 45.0 3E+02 0.0065 26.7 18.7 44 87-134 82-125 (271)
194 KOG1118 Lysophosphatidic acid 43.9 1.5E+02 0.0034 29.2 8.8 86 23-118 8-99 (366)
195 cd07654 F-BAR_FCHSD The F-BAR 43.8 3E+02 0.0065 26.4 17.5 30 116-145 77-106 (264)
196 cd07685 F-BAR_Fes The F-BAR (F 36.3 3.8E+02 0.0083 25.4 18.6 92 103-205 63-159 (237)
197 PF08103 Antimicrobial_8: Uper 36.0 33 0.00071 18.8 1.7 12 2-13 4-15 (17)
198 cd07591 BAR_Rvs161p The Bin/Am 35.8 3.6E+02 0.0079 25.0 16.5 14 154-167 120-133 (224)
199 cd07634 BAR_GAP10-like The Bin 35.6 3.6E+02 0.0079 25.0 14.3 28 87-115 23-50 (207)
200 cd07608 BAR_ArfGAP_fungi The B 35.3 3.6E+02 0.0077 24.8 16.0 167 53-249 6-183 (192)
201 KOG0994 Extracellular matrix g 31.2 9.4E+02 0.02 28.4 20.6 17 249-265 1731-1747(1758)
202 KOG3647 Predicted coiled-coil 30.9 4.2E+02 0.0091 25.7 9.3 6 87-92 54-59 (338)
203 KOG3580 Tight junction protein 30.3 86 0.0019 33.7 5.0 52 304-355 502-562 (1027)
204 COG0484 DnaJ DnaJ-class molecu 29.6 53 0.0012 33.2 3.3 28 193-220 40-67 (371)
205 PF13758 Prefoldin_3: Prefoldi 29.1 1.3E+02 0.0029 24.5 4.9 27 166-200 72-98 (99)
206 KOG1314 DHHC-type Zn-finger pr 27.8 48 0.001 33.2 2.6 43 318-361 329-383 (414)
207 KOG0624 dsRNA-activated protei 27.7 4.6E+02 0.01 26.7 9.3 17 190-206 430-446 (504)
208 PF00575 S1: S1 RNA binding do 25.5 1.1E+02 0.0023 22.5 3.7 36 325-360 2-39 (74)
209 cd07661 BAR_ICA69 The Bin/Amph 24.9 3.8E+02 0.0083 24.8 7.7 92 106-206 63-159 (204)
210 cd07595 BAR_RhoGAP_Rich-like T 24.9 5.9E+02 0.013 24.0 14.0 123 34-166 14-144 (244)
211 PF08112 ATP-synt_E_2: ATP syn 24.6 2.2E+02 0.0047 20.5 4.7 41 129-173 5-46 (56)
212 COG2956 Predicted N-acetylgluc 24.3 1.5E+02 0.0033 29.6 5.3 71 39-118 134-207 (389)
213 PRK10869 recombination and rep 24.1 8.9E+02 0.019 25.7 16.4 25 107-131 263-287 (553)
214 KOG1937 Uncharacterized conser 23.9 8.1E+02 0.017 25.6 10.4 20 154-173 311-330 (521)
215 cd07588 BAR_Amphiphysin The Bi 23.7 5.9E+02 0.013 23.5 19.0 121 119-261 68-194 (211)
216 cd07613 BAR_Endophilin_A1 The 23.7 64 0.0014 30.3 2.5 80 79-166 71-151 (223)
217 cd07677 F-BAR_FCHSD2 The F-BAR 23.3 6.7E+02 0.015 24.1 15.1 140 114-256 75-239 (260)
218 PF15463 ECM11: Extracellular 22.5 3.7E+02 0.0079 23.0 6.9 31 114-144 51-82 (139)
219 TIGR00634 recN DNA repair prot 22.4 9.4E+02 0.02 25.5 16.5 38 110-153 249-286 (563)
220 PF12126 DUF3583: Protein of u 22.4 7.5E+02 0.016 24.3 14.5 62 103-166 11-73 (324)
221 PF14197 Cep57_CLD_2: Centroso 22.0 3.6E+02 0.0077 20.4 6.4 42 116-170 26-67 (69)
222 PRK13545 tagH teichoic acids e 21.8 85 0.0018 33.4 3.3 35 327-361 374-414 (549)
223 KOG3771 Amphiphysin [Intracell 21.7 9.3E+02 0.02 25.1 14.1 54 306-359 400-454 (460)
224 cd05705 S1_Rrp5_repeat_hs14 S1 21.7 1.8E+02 0.0038 21.9 4.3 31 325-355 1-33 (74)
225 PF09712 PHA_synth_III_E: Poly 21.6 2.5E+02 0.0054 27.4 6.3 48 92-142 225-272 (293)
226 KOG4673 Transcription factor T 21.0 1.2E+03 0.025 26.0 15.7 31 230-260 525-555 (961)
227 KOG1463 26S proteasome regulat 20.9 1.3E+02 0.0028 30.3 4.1 76 2-94 286-372 (411)
228 PF05667 DUF812: Protein of un 20.4 1.1E+03 0.024 25.5 14.7 26 148-173 416-442 (594)
229 PF03114 BAR: BAR domain; Int 20.0 6E+02 0.013 22.3 13.7 58 107-168 97-156 (229)
No 1
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=9.3e-58 Score=425.70 Aligned_cols=315 Identities=22% Similarity=0.371 Sum_probs=261.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC-CCCccccchHHhh-hhHHHHHHHHHhhhhhhHHH------------HHhhhhccc-c
Q 017347 11 LREQVARQQQAVFKQFGGGGYG-GSDNVVTDEAELH-QHQRLERLYISTRAGKHFQR------------DIVRGVEGY-I 75 (373)
Q Consensus 11 ~~~~~a~~~q~~~~~~~~~~~~-~~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~~~~------------~i~r~~e~~-~ 75 (373)
++.||+|.+|.+-.++||+.-. ..|+|..+|-|+. +..++.+|+.+|.. |.. +++..+-|. +
T Consensus 1 m~kqF~ka~Q~~sEK~ggae~TkLdDdF~eme~~vdvt~~~v~~i~~~tte---ylqpnpa~rakl~~~n~lsKvrG~~k 77 (366)
T KOG1118|consen 1 MKKQFNKASQWTSEKVGGAEGTKLDDDFLEMEKEVDVTSKGVTKILAKTTE---YLQPNPASRAKLAMLNTLSKVRGQVK 77 (366)
T ss_pred CchHHHHHHHHhccccccccCCcCChHHHHHHHhHHHHHHHHHHHHHhhHH---hcCCChhhhhHHHHHHHHHHhccccc
Confidence 4679999999999999976521 3888998888888 89999999999876 888 888888887 5
Q ss_pred cCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-H
Q 017347 76 VTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-H 154 (373)
Q Consensus 76 ~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~ 154 (373)
.++|||.|+ +||++|++||.|+| .+|.||.+|+.+|+++.+|+++++.|+..++.+||+||++++.. ++|++. |
T Consensus 78 ~~~ypq~e~--~Lg~~mik~gkeLg--~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~-elK~i~hh 152 (366)
T KOG1118|consen 78 EKGYPQTEG--LLGDVMIKHGKELG--DDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLK-ELKDIQHH 152 (366)
T ss_pred CCCCccchh--HHHHHHHHHHHhcC--CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHH-HHHHHHHH
Confidence 678999998 79999999999999 99999999999999999999999999999999999999999775 999999 7
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---hHHHHHHH
Q 017347 155 LAQRYDRMRQEAEAQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA---VESQQQRL 228 (373)
Q Consensus 155 ~k~~y~~~r~~le~rrld~---k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~---~~~~~~~~ 228 (373)
+|| ||+||||| ++|+.|.++ ++||+|.+||+|++|. +...|.+ ++.+|
T Consensus 153 ~KK--------LEgRRldyD~kkkk~~K~~d--------EelrqA~eKfEESkE~-------aE~sM~nlle~d~eq--- 206 (366)
T KOG1118|consen 153 RKK--------LEGRRLDYDYKKKKQGKIKD--------EELRQALEKFEESKEL-------AEDSMFNLLENDVEQ--- 206 (366)
T ss_pred HHH--------hhhhhhHHHHHHHHhccCCh--------HHHHHHHHHHHHHHHH-------HHHHHHHHHhcCHHH---
Confidence 655 99999999 666667664 4999999999999999 9999965 57777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhcCCCCCCCCCCCCC--------CCCCCc-cccCccC------
Q 017347 229 TLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMP--------PPPAYE-EVNGIYA------ 293 (373)
Q Consensus 229 ~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~se~~~~~s~~~~~~p~~~~~~--------p~~s~~-~~~~~~~------ 293 (373)
+++|.+||+||++||+++.+||+.|+..+.+ ++..+++. |+..+.| +|.+.+ ..++..+
T Consensus 207 -vsqL~~Li~aqLdfhrqs~~iL~~l~~~l~~---r~r~a~~~--prrey~p~~~~an~f~p~~~p~~~~g~~s~T~~t~ 280 (366)
T KOG1118|consen 207 -VSQLSALIQAQLDFHRQSTQILQELQMKLFS---RIRDASSQ--PRREYVPRSVLANEFAPSGPPIQLNGKLSKTTSTP 280 (366)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhhcC--chhhcCCcccccccCCCCCCccccCCCCCcCccCc
Confidence 9999999999999999999999999999987 44443333 1111111 000000 0111000
Q ss_pred ---------CCCCC-CC---CCCCCceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeee
Q 017347 294 ---------SQTHN-GS---TDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 360 (373)
Q Consensus 294 ---------~~~~~-~~---~~~~~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~ 360 (373)
++.|+ .| ..+...++|+++|||++++++||.|++||+|.|++..|+|||+|+..|..|+||.|||++
T Consensus 281 ~~ass~~~is~~p~~~p~rs~s~~~~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~v 360 (366)
T KOG1118|consen 281 QSASSPSNISPKPPSTPNRSASQMDQPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEV 360 (366)
T ss_pred cccCCcccCCCCCCCCCCcccCcccchhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEE
Confidence 00111 11 145677899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 017347 361 RDRVL 365 (373)
Q Consensus 361 l~~~p 365 (373)
+.|+|
T Consensus 361 lvpl~ 365 (366)
T KOG1118|consen 361 LVPLP 365 (366)
T ss_pred eccCC
Confidence 99987
No 2
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i
Probab=100.00 E-value=4.1e-56 Score=388.31 Aligned_cols=208 Identities=69% Similarity=0.983 Sum_probs=203.3
Q ss_pred HHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 017347 48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGN 127 (373)
Q Consensus 48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~ 127 (373)
++|||||.||+++|||||+|||++|||+++|+||+|++++|+++|++||.|++ ..++.+++|...||.|+++|++++++
T Consensus 1 q~LekLY~STRaaKhFQrdIVrgvEg~is~g~Kq~Ei~~KlaeDc~KYG~en~-~~~~~LsrAa~~yG~a~~~mEkEre~ 79 (209)
T cd07607 1 QKLERLYASTRAAKHFQRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSENP-SVNTALSRASLHYGSARNQMEKEREN 79 (209)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhhheechhHHHHHHHHHHHHHHhccCCC-CcccHHHHHHHHHhHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999987 57778999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHH
Q 017347 128 LLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNM 207 (373)
Q Consensus 128 ~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~ 207 (373)
|+..+++++++|||.|+.|+||+|+|||+++|||+|++.|.+..++.+|+.|.++..++++.+.+|+.||.|++|++..|
T Consensus 80 l~r~l~~QV~ePLRaMv~GaPLEDARhL~qrYdRmRQeaE~qa~eV~RRq~k~res~~~~e~~~KL~~AE~Kl~elks~M 159 (209)
T cd07607 80 LHRVLSEQVAEPLRAMVYGAPLEDARHLKQRYDRLRQEVEAQAAEVARRRSKDKESGGNPDNAAKLQSAESKLDELKSSM 159 (209)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred HHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 017347 208 AILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG 256 (373)
Q Consensus 208 ~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~ 256 (373)
..||||++.+|..|++|||++|+++|.+||+|+..||++...||++|+.
T Consensus 160 ~~LGKEA~aAm~aVEaQQQrlTlqRL~amVeaEr~Yhqrv~~ILd~l~~ 208 (209)
T cd07607 160 NTLGKEATSAMLAVEDQQQQVTLQRLLAMVEAERAYHQRAADILDKLHD 208 (209)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999875
No 3
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-49 Score=362.68 Aligned_cols=317 Identities=18% Similarity=0.260 Sum_probs=246.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccchHHhhhhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCC--
Q 017347 4 IRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQ-- 81 (373)
Q Consensus 4 ~~~~~~~~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~-- 81 (373)
++|-||---.=|.|+-|.-=.+||.+. . .| -..|||||++++++||+|+++|++++|++++|+ |.
T Consensus 5 ~KKlAsDAG~FfsRAvQfTEEkfgqAE-----k-----TE--LDaHfENLL~rAd~Tk~wTekil~qtEvlLQPN-P~aR 71 (375)
T KOG3725|consen 5 FKKLASDAGGFFSRAVQFTEEKFGQAE-----K-----TE--LDAHFENLLQRADKTKDWTEKILSQTEVLLQPN-PTAR 71 (375)
T ss_pred HHHHhhhcchHHHHHHHHhHHHhhhhh-----H-----hh--HHHHHHHHHHHhhhhhHHHHHHHHhhheecCCC-cchh
Confidence 567777777778888888888888333 1 13 368999999999999999999999999999984 32
Q ss_pred ----------------CchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhc
Q 017347 82 ----------------VEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL 145 (373)
Q Consensus 82 ----------------~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~ 145 (373)
..++|.|+++|+.+|.||| +.++||+||+++|+++++|+.+.++|+.....+||.|||+|++
T Consensus 72 ~EEf~YEKLdrK~psR~nN~ElL~qyM~dAg~efG--ptTpYG~aLiKvaetekrlG~AeReli~taa~nfLtPlRnFlE 149 (375)
T KOG3725|consen 72 MEEFFYEKLDRKKPSRQNNLELLSQYMTDAGEEFG--PTTPYGSALIKVAETEKRLGQAERELIGTAATNFLTPLRNFLE 149 (375)
T ss_pred HHHHHHHHHhccCccccCCHHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHhh
Confidence 2378899999999999999 9999999999999999999999999999999999999999999
Q ss_pred CCCchHHH-HHHHHHHHHHHHHHHHHHHH---HHH--hhhhccCC--CC---------cchHHHHHHHHHHHHHHHHHHH
Q 017347 146 GAPLDDAR-HLAQRYDRMRQEAEAQAIEV---SKR--QAKVRETP--GN---------PDLALKLDAAEVKLHDLKSNMA 208 (373)
Q Consensus 146 ~~~lk~~~-~~k~~y~~~r~~le~rrld~---k~r--~~K~~e~~--~~---------~~~~~eL~~ae~K~~e~~e~~~ 208 (373)
| |||+|. + |+-|.++|||+ |.| ++|..+.. +| ..++++||.|+.+|+.+.|+
T Consensus 150 G-D~KTI~KE--------RklLqnkRLDLDAcKsRLKKAKaae~q~~rN~~~s~~~~ie~aEqelRvaQ~EFDrQaEi-- 218 (375)
T KOG3725|consen 150 G-DMKTIQKE--------RKLLQNKRLDLDACKSRLKKAKAAELQTVRNSKTSGGFTIEQAEQELRVAQAEFDRQAEI-- 218 (375)
T ss_pred c-cHHHHHHH--------HHHHhhcccChHHHHHHHHHhhhhhhhccccccccCcchHhHHHHHHHHHHHHHhHHHHH--
Confidence 9 999998 5 55699999999 444 33333221 11 25689999999999999999
Q ss_pred HhhHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhcCCCCCCCCCCCCCCCCC
Q 017347 209 ILGKEAAAAMA----AVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDTMPPPPA 284 (373)
Q Consensus 209 ~L~kea~~~m~----~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~se~~~~~s~~~~~~p~~~~~~p~~s 284 (373)
++.++ +.+++| |+||..||+||..||.||++.|-+|+.+|.. ..+.-... ....+++|.|+
T Consensus 219 ------TrLLLEGIsstH~nh----LrCL~dFVeaQmtyYAQcyq~MlDLQkqLg~----fps~~~s~-~~~~s~sp~ps 283 (375)
T KOG3725|consen 219 ------TRLLLEGISSTHNNH----LRCLRDFVEAQMTYYAQCYQLMLDLQKQLGG----FPSFRGSS-AILVSNSPDPS 283 (375)
T ss_pred ------HHHHHHhhhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----Cccccccc-ccccCCCCCCC
Confidence 56654 357888 9999999999999999999999999999976 22211100 00111212222
Q ss_pred Cccc-cCc----cCC----CCCCCCC---CCCCceEEEEeccCCCCCCCCccCCCCCEEEEEeec--CCCeEEEEeCCee
Q 017347 285 YEEV-NGI----YAS----QTHNGST---DAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKA 350 (373)
Q Consensus 285 ~~~~-~~~----~~~----~~~~~~~---~~~~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~--~~gW~~G~~~g~~ 350 (373)
..+. .+. .++ ++|...+ ...+..+++|+|||++..+.||++..+|+|+|++.. |.+|+.|+++|++
T Consensus 284 ~~pt~aaa~a~a~pSgl~i~~P~~ls~l~e~sgtrkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkk 363 (375)
T KOG3725|consen 284 NGPTMAAAIAAAKPSGLLITSPDDLSDLKECSGTRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKK 363 (375)
T ss_pred CCchHHHHHhccCCcceeecCcchhhhHHhhccccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCC
Confidence 1110 000 000 0011000 133578899999999999999999999999999975 7789999999999
Q ss_pred eEecCCCeeec
Q 017347 351 GWFPFGYIERR 361 (373)
Q Consensus 351 G~fP~~Yve~l 361 (373)
|.+|.+|++.+
T Consensus 364 GKvPvtYlELL 374 (375)
T KOG3725|consen 364 GKVPVTYLELL 374 (375)
T ss_pred CCcchhHHHhc
Confidence 99999999875
No 4
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=100.00 E-value=8.3e-38 Score=286.39 Aligned_cols=195 Identities=16% Similarity=0.255 Sum_probs=166.0
Q ss_pred HHHHHHhcCCCCCCCCccccchHHhhhhHHHHHHHHHhhhhhhHHHHHhhhhcccccCC-------------------CC
Q 017347 20 QAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTG-------------------SK 80 (373)
Q Consensus 20 q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~-------------------~~ 80 (373)
|.|-.++||+. .+-.| .+|+.|-..+++||.|+.+|++++|.+++|+ .|
T Consensus 1 Q~~~EkiG~AE-----~Teld-------~df~~l~~~~D~tk~~~~~i~~~t~~~LqPNp~~R~~~~~~~k~~~k~~~~~ 68 (220)
T cd07617 1 QFTEEKLGQAE-----KTELD-------AHFENLLARADSTKNWTEKILRQTEVLLQPNPSARVEEFLYEKLDRKVPSRV 68 (220)
T ss_pred CcchhhccCcc-----CCcCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHhccCCCCC
Confidence 45667777554 33323 3688999999999999999999999999985 13
Q ss_pred CCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHH
Q 017347 81 QVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRY 159 (373)
Q Consensus 81 ~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y 159 (373)
+.+ +.||++|++||.||| ++|+||.||++||+|+++|+.++++|+..+.++||+||++++++ +||+|. +
T Consensus 69 ~~~--~~Lg~~M~~~g~~~g--~~s~~G~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~-dlk~i~k~----- 138 (220)
T cd07617 69 TNA--ELLGQYMTEAANDFG--PGTPYGKTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEG-DWKTISKE----- 138 (220)
T ss_pred ChH--HHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-----
Confidence 333 479999999999999 99999999999999999999999999999999999999999998 999988 5
Q ss_pred HHHHHHHHHHHHHH--HHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---HHHHHHHHHHHHH
Q 017347 160 DRMRQEAEAQAIEV--SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLI 234 (373)
Q Consensus 160 ~~~r~~le~rrld~--k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~---~~~~~~~~l~~L~ 234 (373)
|++|++||||| ++++.+.. +.+|++|++||++++|. +...|.++ ++++ |++|.
T Consensus 139 ---RKkLe~rRLd~D~~K~r~~ka--------e~elr~A~~kf~~~~E~-------a~~~M~~il~~~~e~----l~~L~ 196 (220)
T cd07617 139 ---RRLLQNRRLDLDACKARLKKA--------EHELRVAQTEFDRQAEV-------TRLLLEGISSTHVNH----LRCLH 196 (220)
T ss_pred ---HHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHH-------HHHHHHHHHhcChHH----HHHHH
Confidence 55599999999 33333322 45999999999999999 88889764 5566 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q 017347 235 AMVEAERTYHQRVLQILDQLEGEM 258 (373)
Q Consensus 235 ~~veAql~Yh~q~~~iL~~L~~eL 258 (373)
+||+||++||.+|+++|.+|+..|
T Consensus 197 ~lv~AQl~Yh~q~~e~L~~l~~~~ 220 (220)
T cd07617 197 EFVEAQATYYAQCYRHMLDLQKQL 220 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999998754
No 5
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=100.00 E-value=1.3e-37 Score=286.17 Aligned_cols=181 Identities=21% Similarity=0.286 Sum_probs=162.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHhhhhcccccCC------------------------CCCCchhhHHHHHHHHhhccCCCCC
Q 017347 48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTG------------------------SKQVEIGTKLSEDSRKYGSDNTCTS 103 (373)
Q Consensus 48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~------------------------~~~~e~~~~Lg~~m~~~g~e~~~~~ 103 (373)
.+|++|-.++++||.|+.+|+++++.+++|+ ||+.+. .||++|++||+||| +
T Consensus 7 ~~f~~le~k~D~t~~~~~~i~~~t~~~LQPNpa~r~k~~~~~~~~K~~g~~K~~~~p~~~~--~Lg~~M~~~G~elg--~ 82 (223)
T cd07613 7 DDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAEA--LLAEAMLKFGRELG--D 82 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhccccCCCCCChHh--HHHHHHHHHHhhCC--C
Confidence 4788999999999999999999999999985 455555 79999999999999 9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHH---HHHhhh
Q 017347 104 GNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEV---SKRQAK 179 (373)
Q Consensus 104 ~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~---k~r~~K 179 (373)
+|+||.||++||+|+++||.++++|+..++++||+||++++++ +||+|. + ||+|++||||| |+|..|
T Consensus 83 dS~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~-dik~i~k~--------RKkLe~rRLd~D~~K~r~~k 153 (223)
T cd07613 83 ECNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDK-DLREIQHH--------LKKLEGRRLDFDYKKKRQGK 153 (223)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--------HHHHHHHHHhHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999998 999987 5 55599999999 333323
Q ss_pred hccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 017347 180 VRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG 256 (373)
Q Consensus 180 ~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~---~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~ 256 (373)
. .+.+|+.|++||++++|. +...|.++ +.++ +++|.+||+||++||++|.++|.+|+.
T Consensus 154 ~--------~eeElr~A~~kFees~E~-------a~~~M~n~l~~e~e~----~~~L~~fveAQl~Yh~qa~eiL~~l~~ 214 (223)
T cd07613 154 I--------PDEELRQALEKFDESKEI-------AESSMFNLLEMDIEQ----VSQLSALVQAQLEYHKQATQILQQVTV 214 (223)
T ss_pred C--------cHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcCchH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 267999999999999999 99999773 5566 999999999999999999999999999
Q ss_pred HHHH
Q 017347 257 EMLS 260 (373)
Q Consensus 257 eL~s 260 (373)
.|..
T Consensus 215 ~l~~ 218 (223)
T cd07613 215 KLED 218 (223)
T ss_pred HHHH
Confidence 9986
No 6
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=100.00 E-value=1.8e-37 Score=287.69 Aligned_cols=202 Identities=18% Similarity=0.323 Sum_probs=167.2
Q ss_pred HhcCCCCCCCCccccchHHhhhhHHHHHHHHHhhhhhhHHHHHhhhhcccccCC--------------------CCCCch
Q 017347 25 QFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTG--------------------SKQVEI 84 (373)
Q Consensus 25 ~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~--------------------~~~~e~ 84 (373)
||-++.+|+.+.+-.| .+|+.|-..++.+|.|+++|.+.++.+++|+ +|++|
T Consensus 1 Q~~~Ek~G~aEkTe~d-------~df~~le~~~d~~~~~~e~i~~~~~~~lqpNp~~r~~~~~~~k~~~~~~~~~~~~e- 72 (229)
T cd07594 1 QFTEEKLGTAEKTEYD-------AHFENLLQRADKTKVWTEKILKQTEAVLQPNPNVRVEDFIYEKLDRKKPDRLSNLE- 72 (229)
T ss_pred CcchhhccccccCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHhhcccCCCCCcHH-
Confidence 4455555554444433 3567777888888888888888888888763 44444
Q ss_pred hhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHH
Q 017347 85 GTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMR 163 (373)
Q Consensus 85 ~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r 163 (373)
.||++|++||++|| ++|+||.||++||+|+.+||.++.+|+..+.++||+||++++++ +|++|. + |
T Consensus 73 --~Lg~~M~~~g~~lg--~~S~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~-dik~i~k~--------R 139 (229)
T cd07594 73 --QLGQAMIEAGNDFG--PGTAYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEG-DMKTISKE--------R 139 (229)
T ss_pred --HHHHHHHHHHhhCC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--------H
Confidence 69999999999999 99999999999999999999999999999999999999999998 999987 5 5
Q ss_pred HHHHHHHHHH---HHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---HHHHHHHHHHHHHHHH
Q 017347 164 QEAEAQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMV 237 (373)
Q Consensus 164 ~~le~rrld~---k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~---~~~~~~~~l~~L~~~v 237 (373)
++|+++|||| |.|..|.+...+.+..+.+|+.|++||++++|+ +...|.++ ++++ +++|.+||
T Consensus 140 KkLe~rRLd~D~~k~r~~kAk~~~~~~~~e~elr~Ae~kF~~~~E~-------a~~~M~~i~~~~~~~----~~~L~~lv 208 (229)
T cd07594 140 KLLENKRLDLDACKTRVKKAKSAEAIEQAEQDLRVAQSEFDRQAEI-------TKLLLEGISSTHANH----LRCLRDFV 208 (229)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcCchH----HHHHHHHH
Confidence 5599999999 444443332223456799999999999999999 99999774 4666 99999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHH
Q 017347 238 EAERTYHQRVLQILDQLEGEM 258 (373)
Q Consensus 238 eAql~Yh~q~~~iL~~L~~eL 258 (373)
+||++||.+|+++|.+|+..|
T Consensus 209 ~AQl~Yh~q~~e~L~~l~~~l 229 (229)
T cd07594 209 EAQMTYYAQCYQYMDDLQRQL 229 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999998764
No 7
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=100.00 E-value=2.1e-37 Score=286.22 Aligned_cols=203 Identities=17% Similarity=0.270 Sum_probs=172.5
Q ss_pred HHHHHHhcCCCCCCCCccccchHHhhhhHHHHHHHHHhhhhhhHHHHHhhhhcccccCC-------------------CC
Q 017347 20 QAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTG-------------------SK 80 (373)
Q Consensus 20 q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~-------------------~~ 80 (373)
|.|-.++||+. .+-.| .+|+.|-..+++||.|+.+|+++++.+++|+ ||
T Consensus 1 q~~~EkiG~AE-----~Te~d-------~df~~l~~~~d~t~~~~~~i~~~t~~~LqPNp~~r~e~~~~~k~~~~~~~~~ 68 (229)
T cd07616 1 QFTEEKFGQAE-----KTELD-------AHLENLLSKAECTKHWTEKIMKQTEVLLQPNPNARIEEFVYEKLDRKAPSRM 68 (229)
T ss_pred CcchhhccCcc-----CCccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHhccCCCCC
Confidence 45666777554 33323 3788999999999999999999999999985 45
Q ss_pred CCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHH
Q 017347 81 QVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRY 159 (373)
Q Consensus 81 ~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y 159 (373)
+.+. .||++|++||.+|| ++|+||.||++||+|+++||.++++|+..+.++||.||+.++++ +|++|. +
T Consensus 69 ~~~~--~Lg~~M~~~g~~~g--~~S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~-dik~i~k~----- 138 (229)
T cd07616 69 NNPE--LLGQYMIDAGNEFG--PGTAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEG-DYKTITKE----- 138 (229)
T ss_pred ChHH--HHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-----
Confidence 5554 79999999999999 99999999999999999999999999999999999999999998 999988 5
Q ss_pred HHHHHHHHHHHHHH---HHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---HHHHHHHHHHHH
Q 017347 160 DRMRQEAEAQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRL 233 (373)
Q Consensus 160 ~~~r~~le~rrld~---k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~---~~~~~~~~l~~L 233 (373)
|++|+++|||| |.|..|.+.....+..+.+|+.|++||+++.|+ +...|.++ ++++ +++|
T Consensus 139 ---RKkLe~rRLdyD~~K~r~~kAk~~~~~~~~e~elr~ae~efees~E~-------a~~~m~~i~~~~~e~----~~~L 204 (229)
T cd07616 139 ---RKLLQNKRLDLDAAKTRLKKAKVAEARAAAEQELRITQSEFDRQAEI-------TRLLLEGISSTHAHH----LRCL 204 (229)
T ss_pred ---HHHHHHHHHHHHHHHHHHhcCCcchhhcchHHHHHHHHHHHHHHHHH-------HHHHHHhhhhcChHH----HHHH
Confidence 55599999999 444444333334455689999999999999999 88888663 5666 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Q 017347 234 IAMVEAERTYHQRVLQILDQLEGEM 258 (373)
Q Consensus 234 ~~~veAql~Yh~q~~~iL~~L~~eL 258 (373)
..||+||++||.+|.++|.+|+..|
T Consensus 205 ~~lv~AQl~Yh~~~~e~L~~L~~~l 229 (229)
T cd07616 205 NDFVEAQMTYYAQCYQYMLDLQKQL 229 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999998764
No 8
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=100.00 E-value=1.5e-36 Score=279.49 Aligned_cols=180 Identities=21% Similarity=0.323 Sum_probs=152.4
Q ss_pred HHHHHHHHhhhhhhHHHHHhhhhcccccC------------------------CCCCCchhhHHHHHHHHhhccCCCCCC
Q 017347 49 RLERLYISTRAGKHFQRDIVRGVEGYIVT------------------------GSKQVEIGTKLSEDSRKYGSDNTCTSG 104 (373)
Q Consensus 49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~------------------------~~~~~e~~~~Lg~~m~~~g~e~~~~~~ 104 (373)
+|++|-..+++++.|+.+|++.++.+++| +||+.|. .||++|++||.||| ++
T Consensus 8 ~f~~le~~~d~t~~~~~~l~~~t~~~LqpNP~~r~~~~~~~~~~k~~g~~k~~~~p~~~~--~Lg~~M~~~G~~lg--~d 83 (223)
T cd07615 8 DFQEMERKIDVTNKVVAELLSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEG--LLGDCMLRYGRELG--EE 83 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccccCCCCCchh--HHHHHHHHHHhhCC--CC
Confidence 45555555666666666666666665554 3677766 79999999999999 99
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHH---HHHhhhh
Q 017347 105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEV---SKRQAKV 180 (373)
Q Consensus 105 s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~---k~r~~K~ 180 (373)
|+||.||++||+|+++||.++++|+..+.++||+||++++++ +|++|. + |++|++||||| |+|..|.
T Consensus 84 S~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~-dik~i~k~--------RKkLe~rRLd~D~~K~r~~k~ 154 (223)
T cd07615 84 STFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDK-DLKEIGHH--------LKKLEGRRLDFDYKKKRQGKI 154 (223)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--------HHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999998 999987 5 55599999999 3333221
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017347 181 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGE 257 (373)
Q Consensus 181 ~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~---~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~e 257 (373)
.+.+++.|++||+++++. +...|.++ +.++ +++|.+||+||++||++|.++|.+|...
T Consensus 155 --------~~eE~~~A~~kfees~E~-------a~~~M~n~le~e~e~----~~~L~~lv~AQl~Yh~~a~eiL~~l~~~ 215 (223)
T cd07615 155 --------PDEEIRQAVEKFEESKEL-------AERSMFNFLENDVEQ----VSQLSVLIEAALDYHRQSTEILEDLQSK 215 (223)
T ss_pred --------cHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 267999999999999999 99999774 5566 9999999999999999999999999999
Q ss_pred HHH
Q 017347 258 MLS 260 (373)
Q Consensus 258 L~s 260 (373)
+..
T Consensus 216 l~~ 218 (223)
T cd07615 216 LQN 218 (223)
T ss_pred HHH
Confidence 986
No 9
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=100.00 E-value=2.4e-36 Score=278.51 Aligned_cols=181 Identities=21% Similarity=0.328 Sum_probs=161.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHhhhhcccccCC------------------------CCCCchhhHHHHHHHHhhccCCCCC
Q 017347 48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTG------------------------SKQVEIGTKLSEDSRKYGSDNTCTS 103 (373)
Q Consensus 48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~------------------------~~~~e~~~~Lg~~m~~~g~e~~~~~ 103 (373)
.+|++|-.++++||.|+.+|+++++.+++|+ ||+.+. .||++|++||.||| +
T Consensus 7 ~~f~~le~~~d~t~~~~~~l~~~t~~~LqPNp~~R~~~~~~~~~~k~rg~~k~~~~p~~~~--~Lg~~M~~~G~~lg--~ 82 (223)
T cd07614 7 DDFKEMEKKVDLTSKAVTEVLARTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQSEG--LLGETMIRYGKELG--D 82 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccccCCCCCChHh--HHHHHHHHHHhhCC--C
Confidence 4788999999999999999999999999974 456555 79999999999999 9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHH---HHHhhh
Q 017347 104 GNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEV---SKRQAK 179 (373)
Q Consensus 104 ~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~---k~r~~K 179 (373)
+|+||.||++||+|+++||.++++|+..+.++||+||++++++ +|++|. + |++|++||||| |+|..|
T Consensus 83 dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~-dik~i~k~--------RKkLe~rRLdyD~~K~r~~k 153 (223)
T cd07614 83 ESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDK-DLKEIQHH--------LKKLEGRRLDFDYKKKRQGK 153 (223)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--------HHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999998 999987 5 55599999999 333322
Q ss_pred hccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 017347 180 VRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG 256 (373)
Q Consensus 180 ~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~---~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~ 256 (373)
. .+.+|+.|++||++++|+ +...|.++ ++++ +++|..||+||++||++|.++|.+|+.
T Consensus 154 ~--------~eeelr~a~ekFees~E~-------a~~~M~~il~~e~e~----~~~L~~lveAQl~Yh~qa~eiL~~l~~ 214 (223)
T cd07614 154 I--------PDEELRQAMEKFEESKEV-------AETSMHNLLETDIEQ----VSQLSALVDAQLDYHRQAVQILDELAE 214 (223)
T ss_pred C--------chHHHHHHHHHHHHHHHH-------HHHHHHHHHhCChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 146999999999999999 99999763 5666 999999999999999999999999999
Q ss_pred HHHH
Q 017347 257 EMLS 260 (373)
Q Consensus 257 eL~s 260 (373)
.|..
T Consensus 215 ~l~~ 218 (223)
T cd07614 215 KLKR 218 (223)
T ss_pred HHHH
Confidence 9986
No 10
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=100.00 E-value=1.6e-34 Score=267.54 Aligned_cols=191 Identities=25% Similarity=0.333 Sum_probs=154.7
Q ss_pred CCccccchHHhh-hhHHHHHHHHHhhhhhhHH-------------HHHhhhhccc-ccCCCCCCchhhHHHHHHHHhhcc
Q 017347 34 SDNVVTDEAELH-QHQRLERLYISTRAGKHFQ-------------RDIVRGVEGY-IVTGSKQVEIGTKLSEDSRKYGSD 98 (373)
Q Consensus 34 ~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~~~-------------~~i~r~~e~~-~~~~~~~~e~~~~Lg~~m~~~g~e 98 (373)
+|+|...|.++. +|..+|+|+.+|.. |. +.+.|. +|- ...+||+++. .||++|++||.|
T Consensus 6 d~df~~le~~~d~~~~~~~~l~~~~~~---~lqpNP~~r~~~~~~~~~~K~-~g~~~~~~~p~~~~--~Lg~~M~~~g~e 79 (223)
T cd07592 6 DDEFLEMERKTDATSKLVEDLIPKTKE---YLQPNPAARAKLAMQNTYSKI-RGQAKSTKYPQPEG--LLGEVMLKYGRE 79 (223)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCchHhHHHHHHHHHHHH-hccCcccCCCCccc--HHHHHHHHHHhh
Confidence 556665555555 56666666655544 32 222222 333 2234788776 799999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHH--HH
Q 017347 99 NTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEV--SK 175 (373)
Q Consensus 99 ~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~--k~ 175 (373)
|| ++|+||.||++||+|+.+||.++.+|+..+.++||+||++++++ +|++|. + |++|+++|||| ++
T Consensus 80 lg--~~S~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~-dik~i~k~--------RKkLe~rRLdyD~~k 148 (223)
T cd07592 80 LG--EDSNFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDK-DLKEINHH--------RKKLEGRRLDYDYKK 148 (223)
T ss_pred cC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 99 99999999999999999999999999999999999999999998 999987 5 55599999999 33
Q ss_pred H-hhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 176 R-QAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERTYHQRVLQIL 251 (373)
Q Consensus 176 r-~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~---~~~~~~~~l~~L~~~veAql~Yh~q~~~iL 251 (373)
+ ..|. .+++|+.|++||++++|+ +...|.++ ++++ +++|..||+||++||++|.++|
T Consensus 149 ~k~~k~--------~eeEl~~Ae~kfe~s~E~-------a~~~M~~il~~e~e~----~~~L~~lveAQl~Yh~~~~e~L 209 (223)
T cd07592 149 RKQGKG--------PDEELKQAEEKFEESKEL-------AENSMFNLLENDVEQ----VSQLSALVEAQLDYHRQSAEIL 209 (223)
T ss_pred HhcccC--------chHHHHHHHHHHHHHHHH-------HHHHHHHHHhCchHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2221 367999999999999999 99999763 5666 9999999999999999999999
Q ss_pred HHhHHHHHH
Q 017347 252 DQLEGEMLS 260 (373)
Q Consensus 252 ~~L~~eL~s 260 (373)
.+|...|..
T Consensus 210 ~~l~~~L~~ 218 (223)
T cd07592 210 EELQSKLQE 218 (223)
T ss_pred HHHHHHHHH
Confidence 999999986
No 11
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=100.00 E-value=5e-34 Score=262.65 Aligned_cols=197 Identities=19% Similarity=0.260 Sum_probs=169.4
Q ss_pred CCccccchHHhh-hhHHHHHHHHHhhhhhhHHHHHhhhhc-ccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHH
Q 017347 34 SDNVVTDEAELH-QHQRLERLYISTRAGKHFQRDIVRGVE-GYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAA 111 (373)
Q Consensus 34 ~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e-~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al 111 (373)
+|+|...|.+|. +|.++++|+.+|.. |.++|.|..+ |-. +.+..+ .+.||++|+.||.+|| ++|+||.||
T Consensus 6 ~ddf~~le~~~d~~~~~~~~l~~~~~~---y~~~l~k~~~~g~~--k~k~~p-~~~Lg~~M~~~g~~lg--~dS~~G~aL 77 (215)
T cd07593 6 SEEFLELEKEIELRKEGMERLHRSTEA---YVEYLSKKKPLLDD--KDKCLP-VEALGLVMINHGEEFP--QDSEYGSCL 77 (215)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhccCccccc--cccCCh-HHHHHHHHHHHHhhCC--CCChHHHHH
Confidence 789999999999 99999999999988 9999999985 432 234443 3479999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhccCCCCcc
Q 017347 112 LSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEV---SKRQAKVRETPGNPD 188 (373)
Q Consensus 112 ~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~---k~r~~K~~e~~~~~~ 188 (373)
++||+|+.+||.+++.|+..+.++||+||++++. ++|+|. +.|++|++||||| |.|..|.+.. .+.
T Consensus 78 ~~~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~--~~k~i~-------k~RKkLe~rRLdyD~~ksk~~kak~~--~~~ 146 (215)
T cd07593 78 SKLGRAHCKIGTLQEEFADRLSDTFLANIERSLA--EMKEYH-------SARKKLESRRLAYDAALTKSQKAKKE--DSR 146 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcccc--chh
Confidence 9999999999999999999999999999999994 888876 2355699999999 3333232222 246
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347 189 LALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS 260 (373)
Q Consensus 189 ~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~---~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s 260 (373)
++++|+.|++||++++|+ +...|.++ ++++ +++|..||+||++||++|.++|.+|+..|+.
T Consensus 147 ~eeElr~Ae~kfees~E~-------a~~~M~~i~~~e~e~----~~~L~~lv~AQl~Yh~q~~e~L~~l~~~~~~ 210 (215)
T cd07593 147 LEEELRRAKAKYEESSED-------VEARMVAIKESEADQ----YRDLTDLLDAELDYHQQSLDVLREVRQSWPS 210 (215)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 789999999999999999 99999774 5666 9999999999999999999999999999875
No 12
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.97 E-value=6.9e-30 Score=238.36 Aligned_cols=189 Identities=13% Similarity=0.151 Sum_probs=158.5
Q ss_pred HHHHHHHHhhhhhhHHHHHhhhhcccccCC--------CCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHH
Q 017347 49 RLERLYISTRAGKHFQRDIVRGVEGYIVTG--------SKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120 (373)
Q Consensus 49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~--------~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~ 120 (373)
+|+.|-.++++||.|+.+|.++++.+++|+ .+..+ .+.||++|++||.||| ++|+||.+|.+||+++++
T Consensus 16 ~~~~le~r~D~~k~~~~~i~kk~~~~LQpnp~~r~ekr~~k~P-~~~L~q~M~~~g~elg--~~s~lg~aL~~~gea~~k 92 (248)
T cd07619 16 DLLQVEKRLELVKQVSHSTHKKLTACLQGQQGVDADKRSKKLP-LTTLAQCMVEGAAVLG--DDSLLGKMLKLCGETEDK 92 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhccCCC-HHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHH
Confidence 688899999999999999999999999984 11222 2269999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHH---HHHhhhhc-----------cCCC
Q 017347 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEV---SKRQAKVR-----------ETPG 185 (373)
Q Consensus 121 l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~---k~r~~K~~-----------e~~~ 185 (373)
||.++.+|+..+.++||+||++++++ ||++|. ++ +.|+++|||| |+|..... ...+
T Consensus 93 la~a~~~~d~~i~~~fl~PL~~~le~-dlk~I~k~R--------K~Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~k 163 (248)
T cd07619 93 LAQELILFELQIERDVVEPLYVLAEV-EIPNIQKQR--------KHLAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGAK 163 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHH--------HHHHhhHhhHHHHHHHHHhccccccccccccCCCCc
Confidence 99999999999999999999999998 999998 64 4599999999 33332111 0111
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347 186 NPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA---VESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS 260 (373)
Q Consensus 186 ~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~---~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s 260 (373)
..++..++..|+++|+.+++. ++..|.+ .+.++ ...|..||+||++||+++.++|+.+...+..
T Consensus 164 ~e~lr~e~E~ae~~~e~~kd~-------~~~~m~~~l~~e~e~----~~~l~~Lv~AQleYHr~A~eiLe~l~~~i~~ 230 (248)
T cd07619 164 ADALREEMEEAANRMEICRDQ-------LSADMYSFVAKEIDY----ANYFQTLIEVQAEYHRKSLELLQSVLPQIKA 230 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235567778888888888778 7888865 46666 8899999999999999999999999998887
No 13
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=99.97 E-value=2.2e-29 Score=236.63 Aligned_cols=197 Identities=19% Similarity=0.265 Sum_probs=164.5
Q ss_pred HHHHHHHHhhhhhhHHHHHhhhhcccccCCC--------CCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHH
Q 017347 49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGS--------KQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ 120 (373)
Q Consensus 49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~--------~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~ 120 (373)
+|+.|-..++++|.|..+|+|+++.+++|+. +.++. ..||++|++||.+|| ++|+||.||++||+++.+
T Consensus 16 ~~~~lE~~~d~~k~~~~~~~k~~~~~lq~n~~~~~ekr~rk~p~-~~Lg~~M~~~g~~l~--~~s~lg~~L~~~g~a~~~ 92 (244)
T cd07595 16 ELLQIEKRVEAVKDACQNIHKKLISCLQGQSGEDKDKRLKKLPE-YGLAQSMLESSKELP--DDSLLGKVLKLCGEAQNT 92 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhcCCCcHHHHhhhhccCcH-HHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHH
Confidence 4556777889999999999999999988742 12222 279999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhc-c------CCCCcchH
Q 017347 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEV---SKRQAKVR-E------TPGNPDLA 190 (373)
Q Consensus 121 l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~---k~r~~K~~-e------~~~~~~~~ 190 (373)
||.++.+|+..+.++|++||++++++ +|++|. +.|+.|+++|||| |+|..|.+ + ..+.+.++
T Consensus 93 ia~~~~~~d~~i~~~fl~pL~~~le~-dik~i~-------k~RKkLe~~RLd~D~~k~r~~ka~k~~~~~~~~~K~~~l~ 164 (244)
T cd07595 93 LARELVDHEMNVEEDVLSPLQNILEV-EIPNIQ-------KQKKRLSKLVLDMDSARSRYNAAHKSSGGQGAAAKVDALK 164 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-------HHHHHHhhhhHHHHHHHHHHHhccccccccccccccchHH
Confidence 99999999999999999999999998 999987 2355599999999 44433322 1 12234668
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhc
Q 017347 191 LKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEA 267 (373)
Q Consensus 191 ~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~---~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~se~~~~~s 267 (373)
.+++.|+.||+++++. +...|.++ |.++ +++|..||+||++||++|.++|+.+...|.. .+..
T Consensus 165 eE~e~ae~k~e~~~e~-------~~~~M~~~l~~E~e~----~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~---~~~~ 230 (244)
T cd07595 165 DEYEEAELKLEQCRDA-------LATDMYEFLAKEAEI----ASYLIDLIEAQREYHRTALSVLEAVLPELQE---QIEQ 230 (244)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh
Confidence 8999999999999999 99999874 4555 9999999999999999999999999999987 4444
Q ss_pred CCC
Q 017347 268 APT 270 (373)
Q Consensus 268 ~~~ 270 (373)
+++
T Consensus 231 ~~~ 233 (244)
T cd07595 231 SPS 233 (244)
T ss_pred hcc
Confidence 443
No 14
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=99.96 E-value=2.1e-28 Score=228.79 Aligned_cols=188 Identities=14% Similarity=0.193 Sum_probs=159.7
Q ss_pred HHHHHHHHhhhhhhHHHHHhhhhcccccCC---------CCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHH
Q 017347 49 RLERLYISTRAGKHFQRDIVRGVEGYIVTG---------SKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARA 119 (373)
Q Consensus 49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~---------~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~ 119 (373)
+|+.|-.+++++|.|+.+|+|+++.+++|+ .+-.+. .||++|++||.|+| ++|.||.+|.+||++++
T Consensus 16 ~~~~le~r~D~~k~~~~~i~k~~~~~lqpnp~~r~ek~~kk~p~~--~Lgq~M~e~~~~lg--~~s~~g~aL~~~gea~~ 91 (246)
T cd07618 16 DLLQIERRLDTVRSVSHNVHKRLIACFQGQVGTDAEKRHKKLPLT--ALAQNMQEGSAQLG--EESLIGKMLDTCGDAEN 91 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccCCHH--HHHHHHHHHHhcCC--CCccHHHHHHHHHHHHH
Confidence 677888999999999999999999999874 122333 79999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHH---HHHhhhhcc---------CCCC
Q 017347 120 QMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEV---SKRQAKVRE---------TPGN 186 (373)
Q Consensus 120 ~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~---k~r~~K~~e---------~~~~ 186 (373)
+|++++.+++..+..+|++||++++++ +|++|. + |+.|+++|||| |+|..+... ..+.
T Consensus 92 kla~~~~~~d~~ie~~fl~PL~~~le~-dlk~I~K~--------RkkLe~~RLD~D~~K~r~~~a~~~~~~~~~~~~~K~ 162 (246)
T cd07618 92 KLAFELSQHEVLLEKDILDPLNQLAEV-EIPNIQKQ--------RKQLAKLVLDWDSARGRYNQAHKSSGTNFQAMPSKI 162 (246)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHh-HHHHHHHH--------HHHHHhHHhhHHHHHHHHHhccccCccccccccchh
Confidence 999999999999999999999999998 999998 5 44599999999 333322211 0112
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347 187 PDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA---VESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS 260 (373)
Q Consensus 187 ~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~---~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s 260 (373)
+.+..++..|+.||+++++. +...|.+ .+.++ +++|..||+||++||+++.++|+.+...+..
T Consensus 163 ~~l~ee~e~a~~k~E~~kD~-------~~~dm~~~l~~e~e~----~~~l~~lv~aQ~eYHr~a~e~Le~~~p~i~~ 228 (246)
T cd07618 163 DMLKEEMDEAGNKVEQCKDQ-------LAADMYNFASKEGEY----AKFFVLLLEAQADYHRKALAVIEKVLPEIQA 228 (246)
T ss_pred hhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23356899999999999999 7777865 35555 9999999999999999999999999999987
No 15
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.94 E-value=1.4e-25 Score=210.07 Aligned_cols=152 Identities=19% Similarity=0.257 Sum_probs=130.7
Q ss_pred HHHHHHHHhhccCCCCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHH
Q 017347 87 KLSEDSRKYGSDNTCTS-----GNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDR 161 (373)
Q Consensus 87 ~Lg~~m~~~g~e~~~~~-----~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~ 161 (373)
.||++|+++|.+|| + +++||.||++||+|+.+||.+|.+++..+.++|++||++++++ +|++|. +
T Consensus 82 aLs~~m~~~~~~l~--~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~-d~k~i~-------k 151 (242)
T cd07600 82 ALSRAALASSLELK--SLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNT-SFQKAH-------K 151 (242)
T ss_pred HHHHHHHHHHHHhC--ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-------H
Confidence 69999999999999 7 9999999999999999999999999999999999999999998 888877 2
Q ss_pred HHHHHHHHHHHH---HHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 017347 162 MRQEAEAQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVE 238 (373)
Q Consensus 162 ~r~~le~rrld~---k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~ve 238 (373)
.|++|+++|||| |.+..|.+...+......+++.||++|.+++|+ +...|.++-...++ +++|..||+
T Consensus 152 ~RKkle~~RLd~D~~K~~~~ka~~~~k~~~~~~e~E~aEdef~~a~E~-------a~~~M~~il~~~e~--i~~L~~fv~ 222 (242)
T cd07600 152 ARKKVEDKRLQLDTARAELKSAEPAEKQEAARVEVETAEDEFVSATEE-------AVELMKEVLDNPEP--LQLLKELVK 222 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhHHH-------HHHHHHHHHhhhHH--HHHHHHHHH
Confidence 356699999999 444444322233456688999999999999999 99999875222333 999999999
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 017347 239 AERTYHQRVLQILDQLEGE 257 (373)
Q Consensus 239 Aql~Yh~q~~~iL~~L~~e 257 (373)
||++||.+|.++|.+|...
T Consensus 223 AQl~Yh~~~~e~L~~l~~~ 241 (242)
T cd07600 223 AQLAYHKTAAELLEELLSV 241 (242)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999999998764
No 16
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.91 E-value=1.1e-22 Score=189.01 Aligned_cols=186 Identities=15% Similarity=0.141 Sum_probs=151.5
Q ss_pred hHHHHHHHHHhhhhhhHHHHHhhhhcccccCC---------CCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHH
Q 017347 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTG---------SKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRA 117 (373)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~---------~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a 117 (373)
...+|+ +++.+|....+|.|++=++++|+ .|-.+. .||++|.+||.++| ++|.||.+| .+|.+
T Consensus 17 l~~iEk---rvD~~k~~~~~i~kkl~~~LQpn~~~~aekr~kKlpe~--~Ls~~M~es~keLg--~dS~lg~aL-e~~~~ 88 (257)
T cd07620 17 LVLVEQ---RVEPAKKAAQLIHKKLQGCLQSQPGLEAEKRMKKLPLM--ALSISMAESFKDFD--AESSIRRVL-EMCCF 88 (257)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhhhccHh--HHHHHHHHHHhhCC--CcchHHHHH-HHHHH
Confidence 444555 45556668888988888888864 244555 79999999999999 999999999 55555
Q ss_pred H-HHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHH---HHHhhhhcc----------
Q 017347 118 R-AQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEV---SKRQAKVRE---------- 182 (373)
Q Consensus 118 ~-~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~---k~r~~K~~e---------- 182 (373)
. ++|+++..+|...+..+||+||..+++. ||++|. |+|+ |+.+|||| |+|..+...
T Consensus 89 ~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e~-dL~~I~k~rKk--------L~k~~LD~D~~K~R~~~a~k~s~~~~~~~~ 159 (257)
T cd07620 89 MQNMLANILADFEMKVEKDVLQPLNKLSEE-DLPEILKNKKQ--------FAKLTTDWNSAKSRSPQAAGRSPRSGGRSE 159 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-hHHHHHHHHHH--------HHhHHhhHHHHHHHHHHhhccccCCccccc
Confidence 5 9999999999999999999999999998 999999 6554 99999999 434322111
Q ss_pred ----------CCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 183 ----------TPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA---VESQQQRLTLQRLIAMVEAERTYHQRVLQ 249 (373)
Q Consensus 183 ----------~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~---~~~~~~~~~l~~L~~~veAql~Yh~q~~~ 249 (373)
..+......+++.|+.||+++++. +...|.+ .|.++ +++|..||++|++||+++..
T Consensus 160 ~~~~~~~~~~~~K~~~lkeE~eea~~K~E~~kd~-------~~a~Mynfl~kE~e~----a~~l~~lveaQ~~YHrqsl~ 228 (257)
T cd07620 160 EVGEHQGIRRANKGEPLKEEEEECWRKLEQCKDQ-------YSADLYHFATKEDSY----ANYFIRLLELQAEYHKNSLE 228 (257)
T ss_pred cccccccccccccccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 011113578999999999999999 8999966 46777 99999999999999999999
Q ss_pred HHHHhHHHHHH
Q 017347 250 ILDQLEGEMLS 260 (373)
Q Consensus 250 iL~~L~~eL~s 260 (373)
+|+.+...+..
T Consensus 229 ~Le~~l~~~~~ 239 (257)
T cd07620 229 FLDKNITELKE 239 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 17
>smart00721 BAR BAR domain.
Probab=99.84 E-value=6e-19 Score=164.67 Aligned_cols=224 Identities=18% Similarity=0.262 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCccccchHHhhhhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCc-------
Q 017347 11 LREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVE------- 83 (373)
Q Consensus 11 ~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e------- 83 (373)
|++++.|..|.|..++|++. .+..|+ .|+.|-...+.++.+.++|+|.++.+++| ++.+.
T Consensus 2 ~~K~~~R~~q~~~ek~G~~e-----~T~~D~-------~f~~le~~~~~~~~~~~kl~k~~~~y~q~-~~~~~~~~~~~~ 68 (239)
T smart00721 2 FKKQFNRAKQKVGEKVGKAE-----KTKLDE-------DFEELERRFDTTEAEIEKLQKDTKLYLQP-NPAVRAKLASQK 68 (239)
T ss_pred ccchhHHHHHHHHHHhCCCC-----cCcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhhHHHHHHHH
Confidence 56789999999999999444 333233 34566666666777999999999999976 44432
Q ss_pred -hhhHHHHHHHH--hhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHH
Q 017347 84 -IGTKLSEDSRK--YGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYD 160 (373)
Q Consensus 84 -~~~~Lg~~m~~--~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~ 160 (373)
+++.|++.+.. +|.++| .++.||.+|..+|++...++.++..| ..+..+|+.|+..++.+ +++++..
T Consensus 69 ~~~~~l~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~~~~~~------ 138 (239)
T smart00721 69 KLSKSLGEVYEGGDDGEGLG--ADSSYGKALDKLGEALKKLLQVEESL-SQVKRTFILPLLNFLLG-EFKEIKK------ 138 (239)
T ss_pred HHHHHHHHHhcCCCCccccC--chhHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHhhhhHHHHHHH-HhHHHHH------
Confidence 33457777777 688888 88999999999999999999999999 99999999999999987 8888872
Q ss_pred HHHHHHHHHHHHH---HHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 017347 161 RMRQEAEAQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMV 237 (373)
Q Consensus 161 ~~r~~le~rrld~---k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~v 237 (373)
.+++++.+|||| +.+-.+.+.....+... +|..++++++.+++.+..++.++...|..+......+.+.+|.+|+
T Consensus 139 -~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~~-kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~ 216 (239)
T smart00721 139 -ARKKLERKLLDYDSARHKLKKAKKSKEKKKDE-KLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALI 216 (239)
T ss_pred -HHHHHHhHHHHHHHHHHHHHHHHHhccCChhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH
Confidence 244588888888 22211111111111112 5666666666666666666666999998765555444588999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 017347 238 EAERTYHQRVLQILDQLEGEML 259 (373)
Q Consensus 238 eAql~Yh~q~~~iL~~L~~eL~ 259 (373)
.||++||.++..+|.+|...|.
T Consensus 217 ~aq~~y~~~~~~~l~~l~~~l~ 238 (239)
T smart00721 217 EAQLNFHRESYKLLQQLQQQLD 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999987663
No 18
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=99.78 E-value=2.2e-17 Score=151.66 Aligned_cols=218 Identities=19% Similarity=0.332 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCccccchHHhhhhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCC-------c
Q 017347 11 LREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQV-------E 83 (373)
Q Consensus 11 ~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~-------e 83 (373)
|++.|+|..|.|..++|++. .+..|+ .|+.+....+.++.+.++|.+.++.+......-. .
T Consensus 1 ~~K~~~R~~q~~~~k~g~~~-----~t~~D~-------~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 68 (229)
T PF03114_consen 1 FKKKINRAKQRVKQKLGKSE-----KTEIDE-------EFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKS 68 (229)
T ss_dssp -HHHHHHHHHHHHHHHTSHH-----HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTH
T ss_pred CChHHHHHHHHHHHHcCCCC-----CCcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhH
Confidence 57889999999999999332 333343 2333333333333344445554444443211111 2
Q ss_pred hhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHH
Q 017347 84 IGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMR 163 (373)
Q Consensus 84 ~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r 163 (373)
..+.||++|..+|.+++ +++.||.+|..||++...|+..+..+...+...|++||+.++ . +++++... +
T Consensus 69 ~~~~l~~~l~~~~~~~~--~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~-~-~~~~i~~~-------~ 137 (229)
T PF03114_consen 69 PFEELADALIELGSEFS--DDSSLGNALEKFGEAMQEIEEARKELESQIESTVIDPLKEFL-K-EFKEIKKL-------I 137 (229)
T ss_dssp HHHHHHHHHHHHHHCTS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH-H-HHHHHHHH-------H
T ss_pred HHHHHHHHHHHHhcccc--ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHhHHHHH-------H
Confidence 23379999999999999 888899999999999999999999999999999999999999 4 88887733 3
Q ss_pred HHHHHHHHHH---HHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 017347 164 QEAEAQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240 (373)
Q Consensus 164 ~~le~rrld~---k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAq 240 (373)
++++.+|+|| +.+..+.++....+..+.+++.|+.+|+...+. ....|.........+...+|..|++++
T Consensus 138 kkr~~~~ldyd~~~~k~~k~~~~~~~~~~~~~l~~a~~~f~~~~~~-------l~~~l~~l~~~~~~~l~~~l~~~i~~q 210 (229)
T PF03114_consen 138 KKREKKRLDYDSARSKLEKLRKKKSKSSKEEKLEEAKEEFEALNEE-------LKEELPKLFAKRQDILEPCLQSFIEAQ 210 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHTTSSBTHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477777777 333333332211121255666666666666666 788887653222222338999999999
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 017347 241 RTYHQRVLQILDQLEGEM 258 (373)
Q Consensus 241 l~Yh~q~~~iL~~L~~eL 258 (373)
..||.++.++|.++...|
T Consensus 211 ~~~~~~~~~~l~~l~~~l 228 (229)
T PF03114_consen 211 LQYFQQLYQILEELQPQL 228 (229)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999999876
No 19
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2.6e-14 Score=142.09 Aligned_cols=222 Identities=18% Similarity=0.228 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCccccchHHhhhhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhH
Q 017347 8 ATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTK 87 (373)
Q Consensus 8 ~~~~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~ 87 (373)
|.-+++.+.|+++.|+-++| + .|.++--+.|.. .-|+......++..||++.+.+..+.. .++....
T Consensus 3 ~k~~kKa~sRa~ekvlqk~g---~--~~~TkD~~FE~~----~~~f~~~e~e~~kLqkd~k~y~~av~a----m~~a~~~ 69 (460)
T KOG3771|consen 3 AKGVQKALNRAPEKVLQKLG---K--VDETKDEQFEQE----ERNFNKQEAEGKRLQKDLKNYLDAVRA----MLAASKK 69 (460)
T ss_pred chhhHHHhccccHHHHhhcC---C--cccccchHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 44578889999999999999 4 466663333432 223333334445566666555444321 1233347
Q ss_pred HHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHH
Q 017347 88 LSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEA 166 (373)
Q Consensus 88 Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~l 166 (373)
|.++|+..=.... ++..|..+ +...+...+.+|+..+.++.+.||..|+. .+.+|. .++| ..+.+..+
T Consensus 70 l~e~l~eiy~p~~--~g~~~l~~------v~~~~d~l~~d~~~~l~d~vl~pl~~~~~--~fpdik~~i~K-R~~Kl~Dy 138 (460)
T KOG3771|consen 70 LAESLQEIYEPDW--PGRDYLQA------VADNDDLLWKDLDQKLVDQVLLPLDTYLG--QFPDIKKAIAK-RGRKLVDY 138 (460)
T ss_pred HHHHHHHhcCccc--ccHHHHHH------HHHHHHHHHHHHHHHHHHhhhhhHHHhhh--hchhHHHHHHh-hcchhhhh
Confidence 8888886544333 44444433 35667788999999999999999999995 899999 4444 44445667
Q ss_pred HHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR 246 (373)
Q Consensus 167 e~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q 246 (373)
++.|.-|.+-+.+++.+ +.++..||++|+...+.+..|+.++...|..+.+-+..+.+.-+.+|+..++.||..
T Consensus 139 D~~r~~~~kvq~~k~kd------~~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~L~~sRv~f~vp~Fqsl~~~q~vf~~E 212 (460)
T KOG3771|consen 139 DSARHSFEKLQAKKKKD------EAKLAKAEEELEKAQQVFEELNNELLEELPALYSSRVGFFVPTFQSLFNLQLVFHKE 212 (460)
T ss_pred HHHHHHHHHHHHhcCCC------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHH
Confidence 77777773332222222 347777999999999999999999999998887777666677889999999999999
Q ss_pred H---HHHHHHhHHHHH
Q 017347 247 V---LQILDQLEGEML 259 (373)
Q Consensus 247 ~---~~iL~~L~~eL~ 259 (373)
. +..|.++...+.
T Consensus 213 mskl~~~L~~v~~kl~ 228 (460)
T KOG3771|consen 213 MSKLYKNLYDVLDKLF 228 (460)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9 555655555443
No 20
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=99.66 E-value=1.1e-14 Score=129.61 Aligned_cols=186 Identities=23% Similarity=0.374 Sum_probs=142.8
Q ss_pred hHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 017347 62 HFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLR 141 (373)
Q Consensus 62 ~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~ 141 (373)
.+.++|++.+..+.+...........||+.|.++|..++..++.++|.+|..||.+...|+..+..+...+...|++||+
T Consensus 7 ~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v~~pL~ 86 (194)
T cd07307 7 KLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKELEEFRDQLEQKLENKVIEPLK 86 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433321112233447999999999999843333599999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 017347 142 AMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV 221 (373)
Q Consensus 142 ~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~ 221 (373)
.|+.+ +++.++..+++|++.|.+++..+..+.+.+.+... ..++..++.+++++++.+..+..++...|..+
T Consensus 87 ~~~~~-~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~-------~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~ 158 (194)
T cd07307 87 EYLKK-DLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKD-------SSKLAEAEEELQEAKEKYEELREELIEDLNKL 158 (194)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99986 99999977777888888887777776333222111 23778888888888888888888899999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 017347 222 ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 255 (373)
Q Consensus 222 ~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~ 255 (373)
...........|..|++++..||.++..+|.++.
T Consensus 159 ~~~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~l~ 192 (194)
T cd07307 159 EEKRKELFLSLLLSFIEAQSEFFKEVLKILEQLL 192 (194)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 7777666688999999999999999999987764
No 21
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=99.54 E-value=2.8e-13 Score=129.62 Aligned_cols=155 Identities=19% Similarity=0.281 Sum_probs=126.2
Q ss_pred HHHHHHHHhh---ccC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHH
Q 017347 87 KLSEDSRKYG---SDN--TCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDR 161 (373)
Q Consensus 87 ~Lg~~m~~~g---~e~--~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~ 161 (373)
.|+.....+. .++ .....+++|.+|.+|+.++.+|+.+|.+++..|...|+.||+..|+. +++.+. +
T Consensus 125 ALSraa~~ss~~l~~l~~~~~~~~~L~~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~Ln~-~~~~a~-------k 196 (289)
T PF10455_consen 125 ALSRAALTSSEILEELKSSDEDEDPLSKALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTTLNT-DFKKAN-------K 196 (289)
T ss_pred HHHHHHHHhHHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-------H
Confidence 5777777777 555 11255799999999999999999999999999999999999999986 666654 4
Q ss_pred HHHHHHHHHHHH--HHHhhhh-ccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 017347 162 MRQEAEAQAIEV--SKRQAKV-RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVE 238 (373)
Q Consensus 162 ~r~~le~rrld~--k~r~~K~-~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~ve 238 (373)
+|+++++.||+| .|-..|. ......+....+|..||++|....+. |...|..+-...+. ++.|..|+.
T Consensus 197 ~RkkV~~sRL~~D~~R~~~k~~~~pekee~~r~~lE~aEDeFv~aTee-------Av~~Mk~vl~~~e~--l~~Lk~lv~ 267 (289)
T PF10455_consen 197 ARKKVENSRLQFDAARANLKNKAKPEKEEQLRVELEQAEDEFVSATEE-------AVEVMKEVLDNSEP--LRLLKELVK 267 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCcccCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhcCcch--HHHHHHHHH
Confidence 577799999998 2222232 23334456678899999999999999 99999998655555 899999999
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 017347 239 AERTYHQRVLQILDQLEGEM 258 (373)
Q Consensus 239 Aql~Yh~q~~~iL~~L~~eL 258 (373)
||+.||..|.+.|..+...+
T Consensus 268 AQl~Yhk~aae~L~~~~~~l 287 (289)
T PF10455_consen 268 AQLEYHKKAAEALSELLKSL 287 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999987765
No 22
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.53 E-value=1.3e-14 Score=103.35 Aligned_cols=49 Identities=33% Similarity=0.692 Sum_probs=45.4
Q ss_pred EeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCee
Q 017347 311 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 359 (373)
Q Consensus 311 alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve 359 (373)
|+|+|.+..++||+|.+||+|.|+...++|||.|+++|+.|+||++||+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence 7899999999999999999999999999999999999999999999996
No 23
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.38 E-value=6.8e-13 Score=96.66 Aligned_cols=53 Identities=36% Similarity=0.718 Sum_probs=48.2
Q ss_pred EEEEeccCCCCCCCCccCCCCCEEEEE-eecCCCeEEEEeCCeeeEecCCCeee
Q 017347 308 LGEVVHPYQAESDVELTLSVGDYVVVR-KVTNNGWAEGECKGKAGWFPFGYIER 360 (373)
Q Consensus 308 ~~~alydf~a~~~~ELsl~~gd~I~V~-~~~~~gW~~G~~~g~~G~fP~~Yve~ 360 (373)
.|+|++||.+..+++|+|.+||+|.|+ +..++|||.|+.+|+.||||.+||+.
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~ 54 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEE 54 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEE
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEE
Confidence 489999999999999999999999999 77888999999999999999999985
No 24
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.36 E-value=2.8e-10 Score=109.92 Aligned_cols=55 Identities=24% Similarity=0.498 Sum_probs=49.4
Q ss_pred eEEEEeccCCCCCCCCccCCCCCEEEEEeec-CCCeEEEEe-CCeeeEecCCCeeec
Q 017347 307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGEC-KGKAGWFPFGYIERR 361 (373)
Q Consensus 307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~-~~gW~~G~~-~g~~G~fP~~Yve~l 361 (373)
..++|||||.++..+||+|+.||.|.+++.. .-||+.|+. +|+.|+||+|||+-+
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence 5789999999999999999999999977765 559999999 599999999999854
No 25
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=99.25 E-value=7.2e-12 Score=129.37 Aligned_cols=56 Identities=27% Similarity=0.491 Sum_probs=53.3
Q ss_pred CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeee
Q 017347 305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 360 (373)
Q Consensus 305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~ 360 (373)
..+.|.|+|||.+++.+||+|.+||+|.|+...++|||.|..+|+.||||.+||..
T Consensus 1050 k~p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1050 KNPVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred CCcceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCcccccccccccc
Confidence 34789999999999999999999999999999999999999999999999999975
No 26
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=99.24 E-value=4.1e-12 Score=126.39 Aligned_cols=56 Identities=32% Similarity=0.696 Sum_probs=53.0
Q ss_pred ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347 306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR 361 (373)
Q Consensus 306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l 361 (373)
+-.++|-|.|.+.+.+||+|.+||+|+|....+.|||+|..+|+.||||+|||..+
T Consensus 17 pLvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~ei 72 (661)
T KOG2070|consen 17 PLVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREI 72 (661)
T ss_pred ceEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999875
No 27
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=99.22 E-value=2.7e-12 Score=124.92 Aligned_cols=59 Identities=22% Similarity=0.362 Sum_probs=55.0
Q ss_pred CCceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeecc
Q 017347 304 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD 362 (373)
Q Consensus 304 ~~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~ 362 (373)
....++||||||++..++||+|++||||+|++..+.+||+|++++..|+||+|||....
T Consensus 213 ~~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 213 TVVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTADL 271 (462)
T ss_pred ccchhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhhh
Confidence 34568999999999999999999999999999999999999999999999999998754
No 28
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.21 E-value=2.1e-11 Score=86.24 Aligned_cols=46 Identities=30% Similarity=0.620 Sum_probs=42.6
Q ss_pred EEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecC
Q 017347 310 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPF 355 (373)
Q Consensus 310 ~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~ 355 (373)
+|+|||.+..+++|+|.+||.|.|++..++|||.|+. +|+.||||+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 5899999999999999999999999999999999999 379999995
No 29
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.18 E-value=5.6e-11 Score=85.55 Aligned_cols=55 Identities=31% Similarity=0.561 Sum_probs=51.0
Q ss_pred eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeC-CeeeEecCCCeeec
Q 017347 307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-GKAGWFPFGYIERR 361 (373)
Q Consensus 307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~-g~~G~fP~~Yve~l 361 (373)
..++|+|+|.+..+++|+|.+||+|.|+...++|||.+++. |+.||||.+||+.+
T Consensus 3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~~ 58 (58)
T smart00326 3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEEI 58 (58)
T ss_pred cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEEC
Confidence 46899999999999999999999999999988999999996 99999999999753
No 30
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.8e-09 Score=112.43 Aligned_cols=58 Identities=33% Similarity=0.705 Sum_probs=53.4
Q ss_pred CceEEEEeccCCCCCCCCccCCCCCEEEEEee--cCCCeEEEEeCCeeeEecCCCeeecc
Q 017347 305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV--TNNGWAEGECKGKAGWFPFGYIERRD 362 (373)
Q Consensus 305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~--~~~gW~~G~~~g~~G~fP~~Yve~l~ 362 (373)
...+|+|||.|++.+.+|++|.+||||.|-.. ..+||+.|+.+|+.||||.|||+.+.
T Consensus 692 ~~vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~ 751 (1118)
T KOG1029|consen 692 DTVKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIP 751 (1118)
T ss_pred ceEEEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcc
Confidence 46789999999999999999999999998765 48899999999999999999999874
No 31
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.16 E-value=4.5e-09 Score=96.49 Aligned_cols=157 Identities=15% Similarity=0.208 Sum_probs=113.7
Q ss_pred HHHHHHHHhhccCCCCCCChH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHH
Q 017347 87 KLSEDSRKYGSDNTCTSGNTL----SKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRM 162 (373)
Q Consensus 87 ~Lg~~m~~~g~e~~~~~~s~~----g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~ 162 (373)
.++..+.++|. + .+|... |.+|.+|+.+...|+..+..|...+...++.||.+|+.. |++++++.|++||+.
T Consensus 40 ~Fa~~L~~f~~--~-~dD~~~~a~gg~~l~kF~~~l~ei~~~~~~L~~q~~~~l~~pL~~F~k~-Dl~~vKe~kK~FdK~ 115 (202)
T cd07606 40 AFAESLEEFGG--G-HDDPISVAVGGPVMTKFTSALREIGSYKEVLRSQVEHMLNDRLAQFADT-DLQEVKDARRRFDKA 115 (202)
T ss_pred HHHHHHHHhcC--C-CCChHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 57788888873 2 233233 368999999999999999999999999999999999998 999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 017347 163 RQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERT 242 (373)
Q Consensus 163 r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~ 242 (373)
..++++-+--+..-..+.+. .+++.|++.+...+.......-+..-.+..+..-...=.|..|..|+.|+.+
T Consensus 116 s~~yd~al~K~~~l~k~~k~--------~~~~ea~~~l~~~R~~F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~t 187 (202)
T cd07606 116 SLDYEQARSKFLSLTKDAKP--------EILAAAEEDLGTTRSAFETARFDLMNRLHAADARKRVEFLERLSGSMDAHLA 187 (202)
T ss_pred HHHHHHHHHHHHhccccCch--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999877666222111111 1444555555555544322222244444444433333348899999999999
Q ss_pred HHHHHHHHHHHhH
Q 017347 243 YHQRVLQILDQLE 255 (373)
Q Consensus 243 Yh~q~~~iL~~L~ 255 (373)
|+++.++++.++.
T Consensus 188 FF~qG~ell~~l~ 200 (202)
T cd07606 188 FFKSGYELLRQLE 200 (202)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988764
No 32
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=99.12 E-value=1.3e-10 Score=82.64 Aligned_cols=51 Identities=35% Similarity=0.644 Sum_probs=47.9
Q ss_pred EEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCC-eeeEecCCCee
Q 017347 309 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG-KAGWFPFGYIE 359 (373)
Q Consensus 309 ~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g-~~G~fP~~Yve 359 (373)
++|+|+|.+..+++|+|.+||+|.|+...++|||.+++.+ +.||||.+||+
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence 6899999999999999999999999999889999999955 99999999986
No 33
>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=99.12 E-value=8.5e-11 Score=109.65 Aligned_cols=57 Identities=33% Similarity=0.638 Sum_probs=53.1
Q ss_pred EEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347 308 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV 364 (373)
Q Consensus 308 ~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~ 364 (373)
.|.|-|.|.++.++||+|.+|+.|.|++++.+|||+|..+|+.||||+|||....+.
T Consensus 109 ~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~ds 165 (379)
T KOG4226|consen 109 PAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEEVDS 165 (379)
T ss_pred ceEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehhccc
Confidence 378899999999999999999999999999999999999999999999999876544
No 34
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=3.9e-11 Score=124.50 Aligned_cols=55 Identities=31% Similarity=0.562 Sum_probs=51.7
Q ss_pred eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347 307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR 361 (373)
Q Consensus 307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l 361 (373)
..+.++|||.+++++||+|.+||+|.|+.+.+.+||.|+++|..|+||+|||..+
T Consensus 1054 ~qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~k~ 1108 (1118)
T KOG1029|consen 1054 CQVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQKQ 1108 (1118)
T ss_pred ceeEEeeccccCCcccccccCCCEEEecCCCChhhhcccccCccccCcccccccc
Confidence 4567899999999999999999999999999999999999999999999999654
No 35
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.11 E-value=1.3e-08 Score=94.88 Aligned_cols=190 Identities=15% Similarity=0.178 Sum_probs=137.5
Q ss_pred hhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 017347 58 RAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVA 137 (373)
Q Consensus 58 ~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl 137 (373)
..++..+|+..+..+.+.....-+..| ++++.... +. .++..+..+.-.|-.+...|......++..+...|+
T Consensus 25 ~~~~kL~Ke~K~Y~dav~~m~~a~~~i----s~~l~~~~-~~--~~~~~~~~~~e~y~~~~~~l~~~~~~~~~~~~~~vl 97 (225)
T cd07590 25 STTKKLYKDMKKYIEAVLALSKAEQRL----SQDLASGP-LC--EDNDELRNLVEALDSVTTQLDKTVQELVNLIQKTFI 97 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHhcc-cC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345557777777777665433334444 44444422 11 133456667777777888888888999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 017347 138 EPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAA 217 (373)
Q Consensus 138 ~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~ 217 (373)
+||.+|+. .+++|+...++.++...+++..|..+++-..|...+ ....+|..||..|+.+++.+..++.++...
T Consensus 98 ~Pl~~~~s--~f~~I~~~I~KR~~Kl~DYD~~r~~~~kl~~K~~k~----~~~~KL~kae~el~~Ak~~ye~~N~~L~~E 171 (225)
T cd07590 98 EPLKRLRS--VFPSVNAAIKRREQSLQEYERLQAKVEKLAEKEKTG----PNLAKLEQAEKALAAARADFEKQNIKLLEE 171 (225)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999996 899999443334444555565555554433332211 125799999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347 218 MAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS 260 (373)
Q Consensus 218 m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s 260 (373)
|.....-.-.+....+.+|+-+|+.||......+.+|+..+..
T Consensus 172 LP~l~~~r~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~~~d~ 214 (225)
T cd07590 172 LPKFYNGRTDYFQPCFEALIKSQVLYYSQSTKIFTQLAPNLDN 214 (225)
T ss_pred hHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9887665556667799999999999999999999999998764
No 36
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.10 E-value=1.4e-08 Score=93.15 Aligned_cols=156 Identities=12% Similarity=0.200 Sum_probs=115.2
Q ss_pred HHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 017347 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (373)
Q Consensus 87 ~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~l 166 (373)
.+++.+-..|.++. +|...|.+|.+||.+.+.|...+..+...+....++||+.|+.+ ||+.+++.+++||+...++
T Consensus 41 ~F~~~L~~~~~~~~--~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F~k~-dL~~vKE~kk~Fdk~s~~y 117 (200)
T cd07603 41 LFVNSLNDLSDYFR--DDSLVQNCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNFVKE-DIKKVKESKKHFEKISDDL 117 (200)
T ss_pred HHHHHHHHHhcccC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHH
Confidence 67888888888775 66678999999999999999999999999999999999999999 9999999999999999998
Q ss_pred HHHHHHHHH-HhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 167 EAQAIEVSK-RQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQ 245 (373)
Q Consensus 167 e~rrld~k~-r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~ 245 (373)
++-.--+.. .+.| . .+++.+...+...+..+....=+..-.+..+..-...-.|.-|..|+.|+.+|++
T Consensus 118 d~al~k~~~~~K~K--~--------~~~~Ea~~~L~~~Rk~f~~~sldyv~~in~iq~kKk~e~le~ll~~~~A~~tff~ 187 (200)
T cd07603 118 DNALVKNAQAPRSK--P--------QEAEEATNILTATRSCFRHTALDYVLQINVLQAKKRHEILSTLLSYMHAQFTFFH 187 (200)
T ss_pred HHHHHHHhccCCCC--H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 875554411 1112 1 1455555555555544222111123233333332222238899999999999999
Q ss_pred HHHHHHHHhH
Q 017347 246 RVLQILDQLE 255 (373)
Q Consensus 246 q~~~iL~~L~ 255 (373)
+..+++.++.
T Consensus 188 qG~el~~dl~ 197 (200)
T cd07603 188 QGYDLLEDLE 197 (200)
T ss_pred hHHHHHHhhc
Confidence 9999998874
No 37
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=99.10 E-value=1.3e-08 Score=94.13 Aligned_cols=180 Identities=19% Similarity=0.228 Sum_probs=127.4
Q ss_pred hhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHH-hhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 017347 59 AGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRK-YGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVA 137 (373)
Q Consensus 59 ~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~-~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl 137 (373)
.++..+|.+.+..+++...-.-++. ++++|.. |+.+.. |. -.+..+...+...+.+|...+...++
T Consensus 27 ~~~kL~k~~K~Y~~av~~m~~~q~~----~~e~l~~lY~p~~~-------~~--~~~~~v~e~~d~~~~~l~~~l~~~Vl 93 (211)
T cd07588 27 SANRLQKDLKNYLNSVRAMKQASKT----LSETLKELYEPDWP-------GR--EHLASIFEQLDLLWNDLEEKLSDQVL 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhCCccc-------cH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777777777766532223333 4555532 222211 21 23355678888999999999999999
Q ss_pred HHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 017347 138 EPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAA 216 (373)
Q Consensus 138 ~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~ 216 (373)
.||.+|+. .+++|+ ..++ -.+.+..+++.|..+.+-+.|... .+.+|..||.+++.+++.+..|+.++..
T Consensus 94 ~Pl~~~~s--~f~~i~k~I~K-R~~KllDYDr~r~~~~kL~~K~~k------de~KL~kae~el~~Ak~~Ye~lN~~L~~ 164 (211)
T cd07588 94 GPLTAYQS--QFPEVKKRIAK-RGRKLVDYDSARHNLEALKAKKKV------DDQKLTKAEEELQQAKKVYEELNTELHE 164 (211)
T ss_pred HHHHHHHH--HHHHHHHHHHH-HhhHHHhHHHHHHHHHHHHhcccc------cHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999996 899998 4444 222233344444444232222111 1569999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347 217 AMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS 260 (373)
Q Consensus 217 ~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s 260 (373)
.|.....-.-.+....+.+|+.+|..||..+..+..+|...|..
T Consensus 165 ELP~L~~~ri~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~~~~~ 208 (211)
T cd07588 165 ELPALYDSRIAFYVDTLQSIFAAESVFHKEIGKVNTKLNDVMDG 208 (211)
T ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99987766666777899999999999999999999999887754
No 38
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=99.09 E-value=1.3e-08 Score=94.43 Aligned_cols=197 Identities=17% Similarity=0.270 Sum_probs=135.6
Q ss_pred chHHhh-hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHH
Q 017347 40 DEAELH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRAR 118 (373)
Q Consensus 40 ~e~e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~ 118 (373)
.|..+. ....|+||.+..++ ++....++. .+-..+++.+.+.|..+-+..+...|.+|.+||.+.
T Consensus 7 lee~l~~~~~~l~Kl~K~~k~-------~~~~g~~~~-------~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l 72 (215)
T cd07604 7 LEESLEGDRVGLQKLKKAVKA-------IHNSGLAHV-------ENELQFAEALEKLGSKALSREEEDLGAAFLKFSVFT 72 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHH-------HHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHH
Confidence 344444 45567777766554 333333222 122246666777776553122225899999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHH-HHHhhhhcc------CCCCcchH
Q 017347 119 AQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEV-SKRQAKVRE------TPGNPDLA 190 (373)
Q Consensus 119 ~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~-k~r~~K~~e------~~~~~~~~ 190 (373)
..|+..+..|..++...++.||..|+.+ |+++++ ++|++||+.+..++..+--+ +.|+...++ +...+++.
T Consensus 73 ~El~~~~~~L~~~~~~~i~~pL~~f~k~-dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~Kk~~~~~~~~~r~e~~~~e~~ 151 (215)
T cd07604 73 KELAALFKNLMQNLNNIIMFPLDSLLKG-DLKGSKGDLKKPFDKAWKDYETKASKIEKEKKQLAKEAGMIRTEITGAEIA 151 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhcchhhhhhhHH
Confidence 9999999999999999999999999998 999998 99999999999887664333 211111111 11113456
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017347 191 LKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEM 258 (373)
Q Consensus 191 ~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL 258 (373)
.+|..+...|....=. ..-.+..+..-+-.=.|+.|..|+.|+++|+++..+.++++..-+
T Consensus 152 ~~l~~~R~~F~~~~~~-------yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~ 212 (215)
T cd07604 152 EEMEKERRMFQLQMCE-------YLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYI 212 (215)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7888888888877655 333444444444333488999999999999999999999887543
No 39
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.09 E-value=1.7e-08 Score=92.31 Aligned_cols=157 Identities=13% Similarity=0.203 Sum_probs=113.5
Q ss_pred HHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 017347 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (373)
Q Consensus 87 ~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~l 166 (373)
.+++.+.++|.++. +|...|.+|.+|+.+...|...+..+..++...+++||.+|+.+ |++.+++.+|+||+....+
T Consensus 41 ~F~~~L~~f~~~~~--~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~~F~k~-dl~~vKe~kK~FdK~s~~~ 117 (200)
T cd07639 41 AFVDGLCDLAHHGP--KDPMMAECLEKFSDGLNHILDSHAELLEATQFSFKQQLQLLVKE-DLRGFRDARKEFERGAESL 117 (200)
T ss_pred HHHHHHHHHhccCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHhhhHhhcchhH
Confidence 57888888888766 67678999999999999999999999999999999999999999 9999998899999998888
Q ss_pred HHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR 246 (373)
Q Consensus 167 e~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q 246 (373)
++..--..+-. |.+ ..+++.|.+.++-.+.......=+....+..+++-...-.|..|.+|+.|+.+|+++
T Consensus 118 d~al~K~~~~~-k~k--------~~e~~Ea~~~l~~~R~~F~~~~ldYV~~in~iq~kKkfefle~ll~~m~a~~tfF~q 188 (200)
T cd07639 118 EAALQHNAETP-RRK--------AQEVEEAAAALLGARATFRDRALDYALQINVIEDKKKFDILEFMLQLMEAQASFFQQ 188 (200)
T ss_pred HHHHHHHhhcc-ccc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76422221100 111 124444444444444442111111233333333333333388999999999999999
Q ss_pred HHHHHHHhH
Q 017347 247 VLQILDQLE 255 (373)
Q Consensus 247 ~~~iL~~L~ 255 (373)
.++++.+|.
T Consensus 189 G~ell~~l~ 197 (200)
T cd07639 189 GHEALSALH 197 (200)
T ss_pred HHHHHHhhc
Confidence 999998875
No 40
>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]
Probab=99.06 E-value=1.8e-10 Score=113.60 Aligned_cols=57 Identities=28% Similarity=0.560 Sum_probs=54.6
Q ss_pred eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccC
Q 017347 307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR 363 (373)
Q Consensus 307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~ 363 (373)
..++|+|+|.++...||+|.+||+|.|+.++|.+|++|+.+|+.|+||++||+.+.+
T Consensus 231 ~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~ 287 (489)
T KOG4225|consen 231 RAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTP 287 (489)
T ss_pred chhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCc
Confidence 458999999999999999999999999999999999999999999999999999876
No 41
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=99.06 E-value=1.9e-08 Score=92.45 Aligned_cols=182 Identities=12% Similarity=0.141 Sum_probs=132.5
Q ss_pred hhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 017347 58 RAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVA 137 (373)
Q Consensus 58 ~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl 137 (373)
..++..+++..+..+++...-.-|+.+++-|.+ -|+.+.| ..+.+. .....+..++.+|...+...+|
T Consensus 26 ~~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e---~Y~~~~~--~~~~~~-------~v~e~~d~~~~~~~~~~~~~vL 93 (211)
T cd07612 26 SDGNRLYKDLKAYLNAVKVMHESSKRLSQTLQD---IYEPDWD--GHEDLG-------AIVEGEDLLWNDYEAKLHDQAL 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCcC--cccHHH-------HHHhccHHHHHHHHHHHHHHHH
Confidence 345567777777777654332344444333333 3566655 333332 3345666799999999999999
Q ss_pred HHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 017347 138 EPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAA 216 (373)
Q Consensus 138 ~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~ 216 (373)
+||.+|+. .+.+|+ ..+||. +....+++.|..+++-+.|...+ +.+|..||+.++.+++.+..|+.++..
T Consensus 94 ~pi~~~~s--~f~~i~~~i~KR~-~KllDYD~~R~~~~kl~~k~~kD------~~KL~kAe~el~~Ak~~ye~lN~~L~~ 164 (211)
T cd07612 94 RTMESYMA--QFPDVKERVAKRG-RKLVDYDSARHHLEALQNAKKKD------DAKIAKAEEEFNRAQVVFEDINRELRE 164 (211)
T ss_pred HHHHHHHH--HHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhccccc------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999996 899999 555533 33556666777774444332222 569999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347 217 AMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS 260 (373)
Q Consensus 217 ~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s 260 (373)
.|.....-.-.+....+.+|+.+|..||..+..+..+|...|..
T Consensus 165 ELP~L~~~Ri~f~~psFeal~~~q~~F~~E~~k~~~~l~~~~~~ 208 (211)
T cd07612 165 ELPILYDSRIGCYVTVFQNISNLRDTFYKEMSKLNHDLYNVMKK 208 (211)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99887666666678899999999999999999999998887653
No 42
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=99.05 E-value=2.4e-08 Score=91.55 Aligned_cols=160 Identities=14% Similarity=0.225 Sum_probs=109.2
Q ss_pred HHHHHHHHhhccCCCC--CCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHH
Q 017347 87 KLSEDSRKYGSDNTCT--SGN--TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRM 162 (373)
Q Consensus 87 ~Lg~~m~~~g~e~~~~--~~s--~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~ 162 (373)
.++..+.+.|-++-+. .|+ ..+.+|.+|+.....|.+.+..|..++...++.||..|+.+ |++.+++.+|+||+.
T Consensus 41 ~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~~~~~~l~~pL~~f~k~-dl~~vKe~kK~FDK~ 119 (207)
T cd07634 41 KFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQNANDVLIAPLEKFRKE-QIGAAKDGKKKFDKE 119 (207)
T ss_pred HHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHccchhHH
Confidence 3455555555443310 233 47999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 017347 163 RQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERT 242 (373)
Q Consensus 163 r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~ 242 (373)
...+++.+--...-.++.++. +++.|.+.++..+..+....=+..-.+..+.+-...=.|..|.+|+.|+.+
T Consensus 120 se~y~~aleK~l~l~~~kk~~--------~~~ea~~~l~~~R~~F~~~~ldYv~~i~~vq~kKkfefle~ll~~~~A~~t 191 (207)
T cd07634 120 SEKYYSILEKHLNLSAKKKES--------HLQRADTQIDREHQNFYEASLEYVFKIQEVQEKKKFEFVEPLLAFLQGLFT 191 (207)
T ss_pred HhHHHHHHHHHHhccccCCcc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987554442222221222 444444444444444111111123333333333322238899999999999
Q ss_pred HHHHHHHHHHHhH
Q 017347 243 YHQRVLQILDQLE 255 (373)
Q Consensus 243 Yh~q~~~iL~~L~ 255 (373)
|+++.++++.++.
T Consensus 192 ff~qG~el~~dl~ 204 (207)
T cd07634 192 FYHEGYELAQEFA 204 (207)
T ss_pred HHHhHHHHHHhhc
Confidence 9999999998874
No 43
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=99.01 E-value=2e-07 Score=85.61 Aligned_cols=192 Identities=14% Similarity=0.230 Sum_probs=126.9
Q ss_pred hHHhh-hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCC-CC-CCC--hHHHHHHHHH
Q 017347 41 EAELH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT-CT-SGN--TLSKAALSYG 115 (373)
Q Consensus 41 e~e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~-~~-~~s--~~g~al~~~g 115 (373)
|.|+. -...+++|+.-.+..-...++..++.= .+++....++-++- ++ .|+ ..|.+|.+||
T Consensus 8 E~ele~l~~~ikkLiK~ck~~i~a~k~~~~a~~--------------~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~ 73 (207)
T cd07602 8 EAELERTNKAIKELIKECKNLISATKNLSKAQR--------------SFAQTLQNFKFECIGETQTDDEIEIAESLKEFG 73 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhccCCcCcccHHHHHHHHHHHH
Confidence 44555 355666666555543333333322222 35555555654432 00 222 4799999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHH
Q 017347 116 RARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDA 195 (373)
Q Consensus 116 ~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ 195 (373)
.+...|+..+..|...+...++.||..|... |+.++++.|++||+...++++-+--+..-..+.++. ...+++..|..
T Consensus 74 ~~l~ei~~~r~~L~~q~~~~l~~pL~~F~k~-dl~~~ke~kk~FdK~se~~~~al~k~~~lsk~kk~~-~~~ea~~~l~~ 151 (207)
T cd07602 74 RLIETVEDERDRMLENAEEQLIEPLEKFRKE-QIGGAKEEKKKFDKETEKFCSSLEKHLNLSTKKKEN-QLQEADAQLDM 151 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCch-HHHHHHHHHHH
Confidence 9999999999999999999999999999998 999999999999999998887666552221121222 01223344444
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 017347 196 AEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 255 (373)
Q Consensus 196 ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~ 255 (373)
+...|....=. ..-.+..+..-...=.|.-|.+|+.|+++|+++.++++.++.
T Consensus 152 ~r~~f~~~~l~-------Yv~~l~~vq~rKkfefle~ll~~m~a~~tff~qG~el~~d~~ 204 (207)
T cd07602 152 ERRNFHQASLE-------YVFKLQEVQERKKFEFVETLLSFMYGWLTFYHQGHEVAKDFK 204 (207)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 44455544433 344444444444333488999999999999999999998874
No 44
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=99.01 E-value=8.8e-10 Score=111.82 Aligned_cols=60 Identities=32% Similarity=0.542 Sum_probs=52.9
Q ss_pred CCceEEEEeccCCCCCCCCccCCCCCEEEEEeec--CCCeEEEEeCCeeeEecCCCeeeccC
Q 017347 304 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERRDR 363 (373)
Q Consensus 304 ~~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~--~~gW~~G~~~g~~G~fP~~Yve~l~~ 363 (373)
.....|++-|||-+.+-.||||+.||+|.|+... |.|||+|+.+|+.||||++||+.-.+
T Consensus 803 ~~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~~~ 864 (865)
T KOG2996|consen 803 KVVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEEDDP 864 (865)
T ss_pred ceeeeeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCcccccccccccccCC
Confidence 3456788899999999999999999999999985 57999999999999999999986543
No 45
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.98 E-value=1.7e-07 Score=86.00 Aligned_cols=157 Identities=14% Similarity=0.238 Sum_probs=114.3
Q ss_pred HHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 017347 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (373)
Q Consensus 87 ~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~l 166 (373)
.++..+.+++.++. .|...+.+|.+||++.+.|...+..+...+....++||+.|+.+ ||..+++.+++||+...++
T Consensus 41 ~F~~~l~d~~~~~~--gd~~i~~~L~kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~-dL~~~KE~rK~Fdk~se~y 117 (200)
T cd07637 41 LFVSGIRDLSQQCK--KDEMISECLDKFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKE-DVRKFKETKKQFDKVREDL 117 (200)
T ss_pred HHHHHHHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Confidence 56777777777766 77789999999999999999999999999999999999999999 9999998899999988887
Q ss_pred HHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR 246 (373)
Q Consensus 167 e~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q 246 (373)
+.-.--+ -+.|.+++ .+++.|...+.+.+..+....=+..-.+..+..-...-.|..|.+|+.|+.+|+++
T Consensus 118 d~al~k~--~~~k~kk~-------~~l~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~q 188 (200)
T cd07637 118 EIALVKN--AQAPRHKP-------HEVEEATSTLTITRKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQ 188 (200)
T ss_pred HHHHHHH--hhcCCCCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6433222 11221211 24555555555555553222222333333343333333388999999999999999
Q ss_pred HHHHHHHhH
Q 017347 247 VLQILDQLE 255 (373)
Q Consensus 247 ~~~iL~~L~ 255 (373)
.++++.++.
T Consensus 189 G~el~~~~~ 197 (200)
T cd07637 189 GYSLLHELD 197 (200)
T ss_pred HHHHHHhhc
Confidence 999998875
No 46
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.97 E-value=8.7e-08 Score=88.65 Aligned_cols=164 Identities=13% Similarity=0.185 Sum_probs=118.8
Q ss_pred HHHHHHHHhhcc-CC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 017347 87 KLSEDSRKYGSD-NT-CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ 164 (373)
Q Consensus 87 ~Lg~~m~~~g~e-~~-~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~ 164 (373)
.++.....++.- |+ +.+|...+.+|.+|+.+...|+..+..|..++...++.||.+|+.+ |+++++..|++||+...
T Consensus 41 ~F~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~~~~L~~q~~~~l~~pL~~F~k~-Dl~~vKe~kK~FdK~s~ 119 (215)
T cd07601 41 ALSKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTMHSTLSSQLADTVLHPISQFMES-DLAEIMTLKELFKAASN 119 (215)
T ss_pred HHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhH
Confidence 466677777543 22 2345456799999999999999999999999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHHH-HhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 017347 165 EAEAQAIEVSK-RQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTY 243 (373)
Q Consensus 165 ~le~rrld~k~-r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Y 243 (373)
++++-+--+.+ .+.|..+. -..+++.+|..+...|..+.=+ ..-.+..+..-...=.|..|.+|+.|+.+|
T Consensus 120 ~~d~al~K~~~l~k~k~~~~-~~~Ea~~~l~~~R~~F~~~~ld-------Yv~~ln~iq~kKk~e~Le~ll~~m~A~~tf 191 (215)
T cd07601 120 DHDGVLSKYSRLSKKRENTK-VKIEVNDEVYACRKKQHQTAMN-------YYCALNLLQYKKTTALLEPMIGYLQAQIAF 191 (215)
T ss_pred HHHHHHHHHhhCCcCCCchH-HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987666622 11121111 0124566777777777776555 333343333333222388999999999999
Q ss_pred HHHHHHHHH-HhHHHHH
Q 017347 244 HQRVLQILD-QLEGEML 259 (373)
Q Consensus 244 h~q~~~iL~-~L~~eL~ 259 (373)
+++.++++. ++..=+.
T Consensus 192 f~qG~ell~~~~~pf~~ 208 (215)
T cd07601 192 FKMGPEMFTRQTEEFLS 208 (215)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 999999997 6655443
No 47
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=98.96 E-value=3.1e-10 Score=111.64 Aligned_cols=57 Identities=35% Similarity=0.568 Sum_probs=52.8
Q ss_pred ceEEEEeccCCCCCCCCccCCCCCEEEEEeec--CCCeEEEEeCCeeeEecCCCeeecc
Q 017347 306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERRD 362 (373)
Q Consensus 306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~--~~gW~~G~~~g~~G~fP~~Yve~l~ 362 (373)
..+|+++|.|++++++||+|++||+|.++.+. +-|||+|+.+|+.|+||-|||+.+.
T Consensus 261 Keycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~ 319 (627)
T KOG4348|consen 261 KEYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQ 319 (627)
T ss_pred hhheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcC
Confidence 35899999999999999999999999988874 7799999999999999999999875
No 48
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=98.94 E-value=8.9e-08 Score=87.75 Aligned_cols=162 Identities=15% Similarity=0.247 Sum_probs=113.9
Q ss_pred CchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHH
Q 017347 82 VEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYD 160 (373)
Q Consensus 82 ~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~ 160 (373)
++..+.||..|+ +. ++...|.+|++||.+...|......|..++...+..||..|+.+ |++..+ ++|+.+|
T Consensus 43 ~~~L~~LG~~~l-----~~--dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~-dLr~vK~d~KK~fd 114 (215)
T cd07642 43 TQALEKFGSNCV-----CR--DDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLLKG-DLKGVKGDLKKPFD 114 (215)
T ss_pred HHHHHHHhhccc-----CC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHhHHHHHHHHH
Confidence 344555666444 33 55578999999999999999999999999999999999999999 999998 9999999
Q ss_pred HHHHHHHHHHHHH-H--HHhhhhccC----CCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHH
Q 017347 161 RMRQEAEAQAIEV-S--KRQAKVRET----PGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRL 233 (373)
Q Consensus 161 ~~r~~le~rrld~-k--~r~~K~~e~----~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L 233 (373)
+.++.+|+...-. + ++.+|-.+- ....++..+|..+..-|+...=+| .-.+..+..-+-+=.|+.+
T Consensus 115 K~~~dyE~~~~k~ek~~r~~~K~~~~~~~e~~~~E~ae~l~~~R~~fq~~a~dY-------v~~in~lk~kk~~eiL~~l 187 (215)
T cd07642 115 KAWKDYETKVTKIEKEKKEHAKMHGMIRTEISGAEIAEEMEKERRFFQLQMCEY-------LLKVNEIKIKKGVDLLQNL 187 (215)
T ss_pred HHHHHHHHHHHHHHhhhhccCCccccchhccchhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHH
Confidence 9999999876422 1 111221110 001233456666666666554331 1112222222222237799
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Q 017347 234 IAMVEAERTYHQRVLQILDQLEGEM 258 (373)
Q Consensus 234 ~~~veAql~Yh~q~~~iL~~L~~eL 258 (373)
..+..||.+|+++..+.+++|..-+
T Consensus 188 ~~~~~AQ~tfF~qG~k~le~l~p~~ 212 (215)
T cd07642 188 IKYFHAQCNFFQDGLKAVETLKPSI 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999987644
No 49
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.94 E-value=1e-07 Score=87.22 Aligned_cols=154 Identities=11% Similarity=0.221 Sum_probs=110.9
Q ss_pred HHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 017347 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (373)
Q Consensus 87 ~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~l 166 (373)
.++..+..++.-.+ +|...|.+|.+|+.+...|+..+..|...+....+.||..|+.. |+.++++.+++||+...+.
T Consensus 41 ~F~~~l~d~~~~~~--~De~i~~~l~kF~~~l~ei~~~~~~L~~q~~~~l~~~L~~F~k~-dl~~vke~kk~FdK~s~~~ 117 (200)
T cd07638 41 QFMNGIRDLAQYSS--KDAVIETSLTKFSDTLQEMINYHTILFDQAQRSIKAQLQTFVKE-DLRKFKDAKKQFDKVSEEK 117 (200)
T ss_pred HHHHHHHHHHHhCC--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhHHH
Confidence 46776666666545 66678999999999999999999999999999999999999998 9999999999999977544
Q ss_pred HHHHHHHHHHhh---hhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 017347 167 EAQAIEVSKRQA---KVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTY 243 (373)
Q Consensus 167 e~rrld~k~r~~---K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Y 243 (373)
+. .+ .|.+ |.++. ...++...|..+...|..+.=+ ....+..+++-...-.|.-|.+|+.|+..|
T Consensus 118 ~~---aL-~K~~~~~k~k~~-e~eEa~~~l~~~r~~F~~~~ld-------Yv~~ln~vq~kKkfe~le~ll~~m~a~~tf 185 (200)
T cd07638 118 EN---AL-VKNAQVQRNKQH-EVEEATNILTATRKCFRHIALD-------YVLQINVLQSKRRSEILKSMLSFMYAHLTF 185 (200)
T ss_pred HH---HH-HHhccCCcCchH-HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 22 1111 11111 0122334555555556555444 344444444444333488999999999999
Q ss_pred HHHHHHHHHHhH
Q 017347 244 HQRVLQILDQLE 255 (373)
Q Consensus 244 h~q~~~iL~~L~ 255 (373)
+++.++++.++.
T Consensus 186 f~qG~el~~d~~ 197 (200)
T cd07638 186 FHQGYDLFSELG 197 (200)
T ss_pred HHhHHHHHHHhc
Confidence 999999998875
No 50
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=98.93 E-value=2e-10 Score=113.05 Aligned_cols=60 Identities=28% Similarity=0.515 Sum_probs=56.0
Q ss_pred CCCceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeecc
Q 017347 303 AMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD 362 (373)
Q Consensus 303 ~~~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~ 362 (373)
......|.|+|.|.+++++||.|.+||+|.|+..+.+|||.|..+|+.|+||+|||..+.
T Consensus 97 q~~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~ 156 (627)
T KOG4348|consen 97 QPQARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELP 156 (627)
T ss_pred CccceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecC
Confidence 345678999999999999999999999999999999999999999999999999998874
No 51
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=98.92 E-value=2.7e-07 Score=84.68 Aligned_cols=140 Identities=8% Similarity=0.184 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 017347 107 LSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGN 186 (373)
Q Consensus 107 ~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~ 186 (373)
.|.+|.+|+.+...|...+..|..++...++.||.+|... |+..+++.|++||+...++++-+--+.+-.+|.++. -.
T Consensus 65 i~~sl~ef~~~~~el~d~r~~L~~~~~~~l~~pL~~F~ke-dl~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk~~-e~ 142 (207)
T cd07635 65 IDASLQEFSNFLKNLEEQREIMALNVTETLIKPLERFRKE-QLGAVKEEKKKFDKETEKNYSLLEKHLNLSAKKKEP-QL 142 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCcc-HH
Confidence 4799999999999999999999999999999999999998 999999999999999999887665553332222222 11
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 017347 187 PDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 255 (373)
Q Consensus 187 ~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~ 255 (373)
.+++..|..+...|....=+ ..-.+..+..-...=.|.-|.+|+.|+..|+++.++++.++.
T Consensus 143 ~EA~~~l~~~r~~F~~~sLd-------Yv~qin~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~~d~~ 204 (207)
T cd07635 143 QEADVQVEQNRQHFYELSLE-------YVCKLQEIQERKKFECVEPMLSFFQGVFTFYHQGYELAKDFN 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 23344555555555554433 333333343333222388999999999999999999998874
No 52
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=98.87 E-value=2.3e-07 Score=85.20 Aligned_cols=184 Identities=11% Similarity=0.209 Sum_probs=122.8
Q ss_pred hhHHHHHhhhhcccccCC--CCCCchhhHHHHHHHHhhccCCCC---CCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017347 61 KHFQRDIVRGVEGYIVTG--SKQVEIGTKLSEDSRKYGSDNTCT---SGN-TLSKAALSYGRARAQMEKERGNLLKALGT 134 (373)
Q Consensus 61 k~~~~~i~r~~e~~~~~~--~~~~e~~~~Lg~~m~~~g~e~~~~---~~s-~~g~al~~~g~a~~~l~~~~~~~~~~~~~ 134 (373)
+.+.++|+|..=++++.+ |....- .++.+...++-++-+. .|. ....+|.+|+.+...|++.+..|...+..
T Consensus 15 ~k~ik~liK~~k~~i~A~k~~~~a~~--~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~L~~qa~~ 92 (207)
T cd07636 15 NKFIKELIKDGKSLIAALKNLSSAKR--KFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTRMIENASE 92 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666655554321 122222 4666677777553311 111 25799999999999999999999999999
Q ss_pred hhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHH
Q 017347 135 QVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEA 214 (373)
Q Consensus 135 ~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea 214 (373)
.++.||.+|+.. |+..+++-+|+||+...++++-+--+..-..|.++ .+++.|.+.+..++.......=+.
T Consensus 93 ~l~~~L~~F~ke-di~~~Ke~kK~FdK~se~~~~al~k~~~ls~k~K~--------~~~eEA~~~L~~~r~~F~~~sLdY 163 (207)
T cd07636 93 VLITPLEKFRKE-QIGAAKEAKKKYDKETEKYCAVLEKHLNLSSKKKE--------SQLHEADSQVDLVRQHFYEVSLEY 163 (207)
T ss_pred HHHHHHHHHHHH-HHHHHHHHhhhHhhhhhHHHHHHHHHhcCcccCCc--------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 99999988899999988888655444221112122 256666666666555532222223
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 017347 215 AAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 255 (373)
Q Consensus 215 ~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~ 255 (373)
.-.+..+.+-...=.|..|.+|+.|+..|+++.++++.++.
T Consensus 164 V~qi~~vq~rKkfefle~llsfm~a~~tffhqG~el~~d~~ 204 (207)
T cd07636 164 VFKVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFS 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 33334444333333388999999999999999999998874
No 53
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=98.83 E-value=5.6e-07 Score=82.83 Aligned_cols=179 Identities=12% Similarity=0.163 Sum_probs=125.7
Q ss_pred hhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHH-hhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 017347 59 AGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRK-YGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVA 137 (373)
Q Consensus 59 ~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~-~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl 137 (373)
.++..+|+..+..+.+...-.-|+.+ +++|.. |+.+.++ . +. +..+| .....++.+|...+..++|
T Consensus 27 ~~~kL~Ke~K~Y~dav~~m~~sq~~~----se~l~e~Y~p~~~g-~-~~----~~~~~---~~~d~~~~dl~~~lv~~vl 93 (211)
T cd07611 27 EGTRLQRELRAYLAAIKGMQEASKKL----TESLHEVYEPDWYG-R-DD----VKTIG---EKCDLLWEDFHQKLVDGAL 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCcccc-c-ch----HHHHH---hhHHHHHHHHHHHHHHHHH
Confidence 34557777777777665333344554 444443 3444210 1 11 11222 4444688888888888899
Q ss_pred HHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 017347 138 EPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAA 216 (373)
Q Consensus 138 ~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~ 216 (373)
+|+.+|+. .+.+|+ ..+||.++ ...+++.|.-+++-+.|...+ +.+|..||..++.+++.+..|+..+..
T Consensus 94 ~P~~~~~s--~f~~I~~~I~KR~hK-llDYD~~r~~~~kL~~k~~kD------e~KL~kAe~el~~Ak~~ye~lN~~Lk~ 164 (211)
T cd07611 94 LTLDTYLG--QFPDIKNRIAKRSRK-LVDYDSARHHLEALQTSKRKD------EGRIAKAEEEFQKAQKVFEEFNVDLQE 164 (211)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhcccccc------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999996 899999 55554333 555566666664443332222 569999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 017347 217 AMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEML 259 (373)
Q Consensus 217 ~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~ 259 (373)
.|.....-.-.++..++.+|+.+|+.||..+..+-.+|..-|.
T Consensus 165 ELP~L~~~Ri~f~~psFeal~~~q~~f~~E~~k~~~~l~~~~~ 207 (211)
T cd07611 165 ELPSLWSRRVGFYVNTFKNVSSLEAKFHKEISVLCHKLYEVMT 207 (211)
T ss_pred HHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988766666777889999999999999999998888887664
No 54
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=98.77 E-value=4.7e-06 Score=78.10 Aligned_cols=225 Identities=17% Similarity=0.229 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCc-cccchHHhh-hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhh
Q 017347 9 TKLREQVARQQQAVFKQFGGGGYGGSDN-VVTDEAELH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGT 86 (373)
Q Consensus 9 ~~~~~~~a~~~q~~~~~~~~~~~~~~~~-~~~~e~e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~ 86 (373)
+|++.+.--++|.|.+++|..+ |+ .|+--.|+. +=+.|+......+..-...+.+.+..-. -.+.+.
T Consensus 3 ~k~~~~~~~tkq~~~e~~g~~~----~~~~it~D~eL~~kle~l~~~~~~y~~L~~~~~~~~~~l~~-----l~q~q~-- 71 (229)
T PF06456_consen 3 KKMKSTYKCTKQMVSEKLGKKE----DSRAITVDDELDAKLELLRDTQRTYRGLLKHARAYQNRLQA-----LSQTQK-- 71 (229)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH--
T ss_pred chhhhhHHHHHHHHHHHcCccc----ccchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH--
Confidence 5677777788999999999433 22 222222444 3333333333333211112222222111 123455
Q ss_pred HHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 017347 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (373)
Q Consensus 87 ~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~l 166 (373)
.||+.+...|.-.+ .-.+|.++..+|++++.+++-+..+...+ ..|+.-|..|+.. =+.|...--++|+..|-+.
T Consensus 72 ~lg~~f~~~~~~e~---~~~l~~~f~~~~~~~~~~~~~~~~L~~~l-~~~~~~l~Tf~~k-aI~DT~~Tik~ye~aR~EY 146 (229)
T PF06456_consen 72 ELGDFFAELGVREK---SPALGEEFSANGEAQRSLAKQGETLLKAL-KRFLSDLNTFRNK-AIPDTLLTIKKYEDARFEY 146 (229)
T ss_dssp HHHHHHHHHHH--H----CCGHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 69999999999422 22689999999999999999999998875 4789999999997 8888885556699999999
Q ss_pred HHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR 246 (373)
Q Consensus 167 e~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q 246 (373)
.+-|++++.-.... .+..+-.....+.++..|.++++.++.|...+..-|--.++.+=++...+|..|+.|...||..
T Consensus 147 ~ay~~~lke~~~e~--~~~~~~~~~~~r~~q~~~~~~k~rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~~al~~y~~~ 224 (229)
T PF06456_consen 147 DAYRLWLKEMSDEL--DPDTAKQEPKFRVAQGNYQEAKERFDKLRSDVLVKLDLLDENRVNVMSHQLVLFQNALAAYFSG 224 (229)
T ss_dssp HHHHHHHHHHH--T--STSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccc--CchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999886654331 1112233678999999999999999999999998886666555455566999999999999999
Q ss_pred HHHHH
Q 017347 247 VLQIL 251 (373)
Q Consensus 247 ~~~iL 251 (373)
+.+.|
T Consensus 225 ~~~~l 229 (229)
T PF06456_consen 225 NAQAL 229 (229)
T ss_dssp HHHHH
T ss_pred hHhhC
Confidence 98765
No 55
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=98.76 E-value=1e-08 Score=100.96 Aligned_cols=56 Identities=32% Similarity=0.514 Sum_probs=53.1
Q ss_pred eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeecc
Q 017347 307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD 362 (373)
Q Consensus 307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~ 362 (373)
.+++++|||.+..++||+|.+|-+|.|+.+.|+|||+|-+.|..|+||-|||+.+.
T Consensus 424 EkVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~ 479 (483)
T KOG2546|consen 424 EKVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLK 479 (483)
T ss_pred HHHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCccccccc
Confidence 46899999999999999999999999999999999999999999999999998763
No 56
>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]
Probab=98.76 E-value=7.3e-09 Score=102.37 Aligned_cols=55 Identities=31% Similarity=0.542 Sum_probs=51.7
Q ss_pred ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEE--EeCCeeeEecCCCeee
Q 017347 306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEG--ECKGKAGWFPFGYIER 360 (373)
Q Consensus 306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G--~~~g~~G~fP~~Yve~ 360 (373)
...++|||.|.+++++||.|..||+|.|++++|+||+.| ++.|.-|.||-|||+.
T Consensus 432 ~l~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~ 488 (489)
T KOG4225|consen 432 PLKYRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKR 488 (489)
T ss_pred cccceeccccCCCCchhheeccCCEEeeeecccCcceeccceecccccccCcccccc
Confidence 345899999999999999999999999999999999999 7899999999999975
No 57
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.71 E-value=1.2e-05 Score=74.41 Aligned_cols=185 Identities=19% Similarity=0.252 Sum_probs=126.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 017347 48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGN 127 (373)
Q Consensus 48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~ 127 (373)
.||-+|+..+.+ |+++--+-.. .+.-||..+..||+. .+..++++|..++++...|+..+..
T Consensus 18 ~hl~~l~~~~~~---lv~k~~~L~~-----------~~~~fak~~~~la~~----E~~~L~~~L~~lae~~~~i~d~~q~ 79 (211)
T cd07598 18 KHFGELCQDFAA---YTRKTARLRD-----------KGDELAKSINAYADT----ENPSLKQGLKNFAECLAALQDYRQA 79 (211)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHH-----------hHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888776 4444322222 133578888888874 2448999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHH
Q 017347 128 LLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSN 206 (373)
Q Consensus 128 ~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~ 206 (373)
....+...|++||..|.. -++-++ .+|. ....|..+-.++.-+-+-+.+ ++....++..||.+++..+..
T Consensus 80 qv~~l~~~v~epLk~Y~~--l~k~~k~~~K~-~~~ar~~~~~~~~~leklk~~------~~~d~~~i~eaE~~l~~a~~d 150 (211)
T cd07598 80 EVERLEAKVVQPLALYGT--ICKHARDDLKN-TFTARNKELKQLKQLEKLRQK------NPSDRQIISQAESELQKASVD 150 (211)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc------CCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999986 566666 5443 333344443344333111111 111123555566666666666
Q ss_pred HHHhhHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347 207 MAILGKEAAAAMAAVESQQQRLTLQ-RLIAMVEAERTYHQRVLQILDQLEGEMLS 260 (373)
Q Consensus 207 ~~~L~kea~~~m~~~~~~~~~~~l~-~L~~~veAql~Yh~q~~~iL~~L~~eL~s 260 (373)
+...++.....|...+.+.-. .+. .|.+||.+++.||.++.++|..+...+.+
T Consensus 151 ~~r~s~~l~ee~~rFe~~k~~-d~K~~l~~fv~~~m~~~~kale~~~~~~~~~~~ 204 (211)
T cd07598 151 ANRSTKELEEQMDNFEKQKIR-DIKTIFSDFVLIEMLFHAKALEVYTAAYQDIQN 204 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666688888766555411 122 77899999999999999999999887765
No 58
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=98.69 E-value=2e-06 Score=78.56 Aligned_cols=160 Identities=17% Similarity=0.232 Sum_probs=104.1
Q ss_pred hhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHH
Q 017347 84 IGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRM 162 (373)
Q Consensus 84 ~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~ 162 (373)
+.+.||..|+. . ++...|.||.+|+...+.|......+..++...+..||.+|+.+ |++..+ ++|+.+++.
T Consensus 45 ~l~~Lg~~~~~-----~--dd~~i~~a~~kfs~~~~El~~~~k~L~~~~~~~v~~~L~~flK~-Dlr~~K~d~KK~FdK~ 116 (215)
T cd07641 45 ALDKFGSNFLS-----R--DNPDLGTAFVKFSTLTKELSTLLKNLLQGLSHNVIFTLDSLLKG-DLKGVKGDLKKPFDKA 116 (215)
T ss_pred HHHHHHHhhcc-----C--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHhHHHHH
Confidence 34455655543 3 55578999999999999999999999999999999999999999 999999 999999999
Q ss_pred HHHHHHHHHHH-HHHh--hhhccCC----CCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHH
Q 017347 163 RQEAEAQAIEV-SKRQ--AKVRETP----GNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIA 235 (373)
Q Consensus 163 r~~le~rrld~-k~r~--~K~~e~~----~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~ 235 (373)
.+++|+...-. +.++ .|-.+-. ...++..+|.....=|.-..=+|-.-= ..+...+-.=.|+.|..
T Consensus 117 ~kDye~k~~K~ek~~r~~~K~~e~~r~e~~~~Eaa~~l~~~Rr~Fq~~a~dYllqi-------n~iq~Kk~~eiLq~ll~ 189 (215)
T cd07641 117 WKDYETKFTKIEKEKREHAKQHGMIRTEITGAEIAEEMEKERRLFQLQMCEYLIKV-------NEIKTKKGVDLLQNLIK 189 (215)
T ss_pred HHHHHHHHHHHHhhhhhhcCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHHH
Confidence 99998755443 1111 2211100 000112222222222222111100000 00111111112779999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q 017347 236 MVEAERTYHQRVLQILDQLEGEM 258 (373)
Q Consensus 236 ~veAql~Yh~q~~~iL~~L~~eL 258 (373)
|+.||.+|+++....+++|..-+
T Consensus 190 ~~hAq~tfFqqG~~~~~~l~py~ 212 (215)
T cd07641 190 YYHAQCNFFQDGLKTADKLKQYI 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999887543
No 59
>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=98.69 E-value=1.1e-08 Score=95.62 Aligned_cols=62 Identities=15% Similarity=0.323 Sum_probs=55.3
Q ss_pred ceEEEEeccCCCCCCCCccCCCCCEEEEEeec--CCCeEEEEe-CCeeeEecCCCeeeccCCCch
Q 017347 306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGEC-KGKAGWFPFGYIERRDRVLAS 367 (373)
Q Consensus 306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~--~~gW~~G~~-~g~~G~fP~~Yve~l~~~p~~ 367 (373)
...+.+||+|++.++.||+|.+||.+.|+++. |++||+++. .|+.|+||.|||+++.+-|.+
T Consensus 191 l~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~~~t 255 (379)
T KOG4226|consen 191 LHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDGPST 255 (379)
T ss_pred EEEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccCccc
Confidence 34678999999999999999999999999875 788999999 999999999999998766543
No 60
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=98.68 E-value=4.8e-06 Score=77.89 Aligned_cols=186 Identities=16% Similarity=0.190 Sum_probs=122.0
Q ss_pred hhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHH-hhccCCCCCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHhhh
Q 017347 58 RAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRK-YGSDNTCTSGNTLSKAALSYGRARAQME-KERGNLLKALGTQ 135 (373)
Q Consensus 58 ~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~-~g~e~~~~~~s~~g~al~~~g~a~~~l~-~~~~~~~~~~~~~ 135 (373)
.+++..+|++.+-.+.+.....-|+ .+++++.. |+...+ ++ .. ...-.|+.+.+.|. ....++...+...
T Consensus 25 ~~~~kL~k~~k~y~da~~~l~~~q~----~i~~~l~~lY~p~~~--~~-~~-~~~~~y~~~v~~l~~~~~~el~~~~~~~ 96 (224)
T cd07591 25 KASTKLQKEAKGYLDSLRALTSSQA----RIAETISSFYGDAGD--KD-GA-MLSQEYKQAVEELDAETVKELDGPYRQT 96 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcCCCCC--cc-Hh-HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3445567777666666543322233 34566554 555543 21 11 12234555555554 3455666668899
Q ss_pred hhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHH
Q 017347 136 VAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEA 214 (373)
Q Consensus 136 fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea 214 (373)
++.|+..++. .+++++ .++|| ++.+...++.|-.+.+-..|...+ ..+|..||.+++++++.+..|+..+
T Consensus 97 V~~Pl~~~~~--~~~~i~k~IkKR-~~KllDYD~~~~k~~kl~~K~~kd------~~kL~kae~el~~a~~~Ye~lN~~L 167 (224)
T cd07591 97 VLDPIGRFNS--YFPEINEAIKKR-NHKLLDYDAARAKVRKLIDKPSED------PTKLPRAEKELDEAKEVYETLNDQL 167 (224)
T ss_pred HHHHHHHHHH--HhhhHHHHHHHH-HhhHhhHHHHHHHHHHHHhcccCC------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 899988 44552 222333333333332222221111 3689999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347 215 AAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS 260 (373)
Q Consensus 215 ~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s 260 (373)
...|.....-.-.+....+.+|+..|+.||......|.++..-+..
T Consensus 168 k~ELP~l~~~r~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~~~~~~ 213 (224)
T cd07591 168 KTELPQLVDLRIPYLDPSFEAFVKIQLRFFTEGYERLAQVQRYLDA 213 (224)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 9999887666656667799999999999999999999998887754
No 61
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=98.67 E-value=1.8e-08 Score=100.69 Aligned_cols=56 Identities=27% Similarity=0.509 Sum_probs=52.7
Q ss_pred ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeec
Q 017347 306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERR 361 (373)
Q Consensus 306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l 361 (373)
...++|+|||++.++.|++|-.+|+|++++..+.|||.|.. .|..|+||+|||+.+
T Consensus 427 ~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 427 PQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred CCCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence 45789999999999999999999999999999999999998 899999999999865
No 62
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.59 E-value=2.4e-08 Score=104.70 Aligned_cols=60 Identities=23% Similarity=0.470 Sum_probs=54.7
Q ss_pred CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCC-eeeEecCCCeeeccCC
Q 017347 305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG-KAGWFPFGYIERRDRV 364 (373)
Q Consensus 305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g-~~G~fP~~Yve~l~~~ 364 (373)
....|+|||||.|..++||||-+|-+|+++++.++|||.|..+| ..||||+|||+.+.+.
T Consensus 773 ~~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~~ 833 (1267)
T KOG1264|consen 773 PQVTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEISTA 833 (1267)
T ss_pred cchhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhccc
Confidence 34679999999999999999999999999999999999999976 6799999999988663
No 63
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=98.58 E-value=9.5e-06 Score=74.46 Aligned_cols=163 Identities=12% Similarity=0.141 Sum_probs=114.7
Q ss_pred HHHHHHHHhh---ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHH
Q 017347 87 KLSEDSRKYG---SDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMR 163 (373)
Q Consensus 87 ~Lg~~m~~~g---~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r 163 (373)
.++..+..|- =++| ++|...+.+|-+|+.+...|...+..+...+....+.||.+|+.. |+.++++.|++||+..
T Consensus 41 ~~~~~l~~~~~~~f~~~-~dDe~i~~~L~kFs~~L~El~~~~~~L~~q~~~sl~~pL~~F~ke-dL~~~Ke~KK~FdK~S 118 (215)
T cd07631 41 LTSKLLKEYEKQRFPLG-GDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKER-DLKEILTLKEVFQIAS 118 (215)
T ss_pred HHHHHHHHHHHhcCCcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 4677777776 3443 355567999999999999999999999999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 017347 164 QEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTY 243 (373)
Q Consensus 164 ~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Y 243 (373)
.++++-+.-+..-..+++++.-..+.+.++..+..+|....=+ ..-.+..+..-...-.|..|.+|+.|+..|
T Consensus 119 e~~d~Al~K~a~lsk~K~~E~~~eea~~~v~~tR~~F~~~aLd-------Yv~qLn~lQ~rKKfefLe~lLs~m~A~~tF 191 (215)
T cd07631 119 NDHDAAINRYSRLSKRRENEKVKYEVTEDVYTSRKKQHQTMMH-------YFCALNTLQYKKKIALLEPLLGYMQAQISF 191 (215)
T ss_pred hHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998776666222111111100012345566666777765444 222222333322222388999999999999
Q ss_pred HHHHHH-HHHHhHHHH
Q 017347 244 HQRVLQ-ILDQLEGEM 258 (373)
Q Consensus 244 h~q~~~-iL~~L~~eL 258 (373)
+++.++ +..++..=+
T Consensus 192 FhqG~e~L~~dl~~f~ 207 (215)
T cd07631 192 FKMGSENLNEQLEEFL 207 (215)
T ss_pred HHhhHHHHHHHHHHHH
Confidence 999999 444555433
No 64
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=98.56 E-value=4.1e-05 Score=71.31 Aligned_cols=194 Identities=17% Similarity=0.278 Sum_probs=121.9
Q ss_pred hHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhc---cCCCCCCChHHHHHHHHHHHHHHHHH
Q 017347 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS---DNTCTSGNTLSKAALSYGRARAQMEK 123 (373)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~---e~~~~~~s~~g~al~~~g~a~~~l~~ 123 (373)
+..+|+|....+. |++.+--.+.+ +..+.+++.+-|. ... ..-.+|.+|..++..++.|+.
T Consensus 9 ~P~~e~lv~~~~k---Y~~al~~~~~a-----------~~~f~dal~ki~~~A~~s~--~s~~lG~~L~~~s~~~r~i~~ 72 (219)
T PF08397_consen 9 NPAWENLVSLGKK---YQKALRAMSQA-----------AAAFFDALQKIGDMASNSR--GSKELGDALMQISEVHRRIEN 72 (219)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---HHHHHHHHHHH-----------HHHHHHHHHHHHHhccCCC--ccccHHHHHHHHHHHHHHHHH
Confidence 3889999987655 87776433332 1123444444332 111 122689999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHH
Q 017347 124 ERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYD----RMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVK 199 (373)
Q Consensus 124 ~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~----~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K 199 (373)
.++.+...+...||.||+..++. +.+.+..+.++|+ +.+.+++..--+.++-..|.+. + .......++.+...
T Consensus 73 ~~~~~~~~~~~~li~pLe~~~e~-d~k~i~~~~K~y~ke~k~~~~~l~K~~se~~Kl~KK~~k-g-k~~~~~~~~~~~~~ 149 (219)
T PF08397_consen 73 ELEEVFKAFHSELIQPLEKKLEE-DKKYITQLEKDYEKEYKRKRDELKKAESELKKLRKKSRK-G-KDDQKYELKEALQD 149 (219)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-C-TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-C-CccccHHHHHHHHH
Confidence 99999999999999999999997 8888776655554 3444444444444332223221 1 12223445555444
Q ss_pred HHHHHHHHHHhhHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347 200 LHDLKSNMAILGKE-AAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS 260 (373)
Q Consensus 200 ~~e~~e~~~~L~ke-a~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s 260 (373)
+.+....|...-+. ...+|.. |--.=.+.+.++..|+...+.||.+...+|+..-..|..
T Consensus 150 v~~~~~ele~~~~~~~r~al~E-ERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~~w~~ 210 (219)
T PF08397_consen 150 VTERQSELEEFEKQSLREALLE-ERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLDDWQE 210 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44433333322222 2222221 222223448899999999999999999999988888876
No 65
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.53 E-value=1.1e-05 Score=73.55 Aligned_cols=156 Identities=11% Similarity=0.192 Sum_probs=105.7
Q ss_pred HHHHHHHHhhccCCCCCCCh------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHH
Q 017347 87 KLSEDSRKYGSDNTCTSGNT------LSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYD 160 (373)
Q Consensus 87 ~Lg~~m~~~g~e~~~~~~s~------~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~ 160 (373)
.++..+...+-++- ++.. .+.||.+||.....|.+.+..|..++...++.||++|+.. |++.+++.||+|+
T Consensus 41 ~Fa~~L~df~f~~i--gd~~tdde~~I~~sL~~F~~~L~~ie~~r~~l~d~aq~s~~~~L~~F~Ke-di~~~Ke~KK~Fd 117 (207)
T cd07633 41 KFSQTLQSFQFDFI--GDTLTDDEINIAESFKEFAELLQEVEEERMMMVQNASDLLIKPLENFRKE-QIGFTKERKKKFE 117 (207)
T ss_pred HHHHHHHHHHhhcC--CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhh
Confidence 45666666666654 5544 7999999999999999999999999999999999999987 9998888888899
Q ss_pred HHHHHHHHHHHHHHHHhh--hhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 017347 161 RMRQEAEAQAIEVSKRQA--KVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVE 238 (373)
Q Consensus 161 ~~r~~le~rrld~k~r~~--K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~ve 238 (373)
+...++++- |+ |.-+. |.++ .+++.|..-+.-.+..+....=+-.--+..+......=.|.-|.+|+.
T Consensus 118 K~se~~~~a-L~-k~a~~s~k~K~--------~e~eEA~~~L~~~r~~F~~~aLdYV~qI~~vQerKKfeive~mLsf~~ 187 (207)
T cd07633 118 KDSEKFYSL-LD-RHVNLSSKKKE--------SQLQEADLQVDKERQNFYESSLEYVYQIQEVQESKKFDVVEPVLAFLH 187 (207)
T ss_pred hhhhHHHHH-HH-HHhcccccCCc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988777641 11 11111 2111 266666655555554421111111111111211111112778999999
Q ss_pred HHHHHHHHHHHHHHHhH
Q 017347 239 AERTYHQRVLQILDQLE 255 (373)
Q Consensus 239 Aql~Yh~q~~~iL~~L~ 255 (373)
|+..|+++.++++.++.
T Consensus 188 a~~tf~hqG~el~~df~ 204 (207)
T cd07633 188 SLFTSNNLTVELTQDFL 204 (207)
T ss_pred HHHHHHhhHHHHHHHhc
Confidence 99999999999988764
No 66
>KOG4792 consensus Crk family adapters [Signal transduction mechanisms]
Probab=98.53 E-value=2.3e-08 Score=91.33 Aligned_cols=62 Identities=19% Similarity=0.400 Sum_probs=56.2
Q ss_pred ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeeccCCCch
Q 017347 306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDRVLAS 367 (373)
Q Consensus 306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l~~~p~~ 367 (373)
...++++|||.+.+..+|.|++||++.|+++....||..+. .|+.|++|.+||+...+..++
T Consensus 124 ~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~~~ 186 (293)
T KOG4792|consen 124 AEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPASAS 186 (293)
T ss_pred hhheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhhcc
Confidence 35678899999999999999999999999999999999999 999999999999988765533
No 67
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=98.51 E-value=1.1e-05 Score=72.92 Aligned_cols=170 Identities=21% Similarity=0.270 Sum_probs=115.3
Q ss_pred CCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HH
Q 017347 77 TGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HL 155 (373)
Q Consensus 77 ~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~ 155 (373)
.|.-++|+-+.+.+.+-+.|+-.=+.++...|.++++|+--.+.++..-.++..++..-+.=||..|+.+ |+++.+ ++
T Consensus 31 sg~~hv~ne~~~~~~le~lg~~~l~~~~~~~~t~fl~~av~tkel~al~k~L~qn~nniv~fpldsflK~-dlr~~K~D~ 109 (213)
T cd07640 31 SGLNHVENEEQYTEALENLGNSHLSQNNHELSTGFLNLAVFTREVTALFKNLVQNLNNIVSFPLDSLLKG-QLRDGRLES 109 (213)
T ss_pred hhHHHHhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHH-HhhhhhHHH
Confidence 3556666666677777777765444455689999999999999999999999999999999999999999 999999 99
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-----hHHHH--HH
Q 017347 156 AQRYDRMRQEAEAQAIEV-SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA-----VESQQ--QR 227 (373)
Q Consensus 156 k~~y~~~r~~le~rrld~-k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~-----~~~~~--~~ 227 (373)
|+.+++..+++|+...-. +-++.|.++. +-. +.+...+.+.++..+.. ..-.|.+ ++.+. -.
T Consensus 110 KK~FeK~skDyE~kl~K~ak~~r~k~~~~-g~~--~~e~eEaae~l~~eRr~-------Fql~acdYllkin~iq~KK~~ 179 (213)
T cd07640 110 KKQMEKAWKDYEAKIGKLEKERREKQKQH-GLI--RLDMTDTAEDMQRERRN-------FQLHMCEYLLKAQESQMKQGP 179 (213)
T ss_pred HhHHHHHHHHHHHHHHHHhccccccchhc-ccc--cccHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHhhch
Confidence 999999999998755444 1111111111 000 01222222233333332 2222211 11111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017347 228 LTLQRLIAMVEAERTYHQRVLQILDQLEGE 257 (373)
Q Consensus 228 ~~l~~L~~~veAql~Yh~q~~~iL~~L~~e 257 (373)
=.|+.|..|..||.+|+++....+++|..-
T Consensus 180 diLq~Llsy~hAQ~~fFqqG~~~l~~l~py 209 (213)
T cd07640 180 DFLQSLIKFFHAQHNFFQDGWKAAQNLGPF 209 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 128899999999999999999999988653
No 68
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=98.46 E-value=9.2e-06 Score=74.12 Aligned_cols=163 Identities=12% Similarity=0.178 Sum_probs=108.8
Q ss_pred HHHHHHHHhhcc-CC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 017347 87 KLSEDSRKYGSD-NT-CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ 164 (373)
Q Consensus 87 ~Lg~~m~~~g~e-~~-~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~ 164 (373)
.|+.-+..|... |+ |.+|...+.||.+|+.+...|...+..|...+...++.||..|+.. |++.+++.|+.|++...
T Consensus 41 ~~s~~l~~~~~~~~~~~~~D~~v~~sL~kFs~~L~el~~~h~~L~dqaq~sl~~pL~~F~Ke-Dl~~vKe~KK~FdK~Se 119 (215)
T cd07632 41 QLSKQLLAYEKQNFALGKGDEEVISTLQYFAKVVDELNVLHSELAKQLADTMVLPIIQFREK-DLTEVSTLKDLFGIASN 119 (215)
T ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhH
Confidence 466667777663 33 3466678999999999999999999999999999999999999998 99999999999999888
Q ss_pred HHHHHHHHHHHHhhhhccCC-CCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 017347 165 EAEAQAIEVSKRQAKVRETP-GNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTY 243 (373)
Q Consensus 165 ~le~rrld~k~r~~K~~e~~-~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Y 243 (373)
++++-=.-+.+- .|.++.. ..+++..+|..+..+|-...=+| .-.+..+..-...=.|.-|.+|+.|+.+|
T Consensus 120 ~~d~AL~Knaql-skkK~~E~~eae~~~~l~~sRr~F~~~ALdY-------V~qiN~lQ~RKKfeiLE~mLsym~Aq~TF 191 (215)
T cd07632 120 EHDLSMAKYSRL-PKKRENEKVKAEVAKEVAYSRRKQHLSSLQY-------YCALNALQYRKRVAMLEPMLGYTHGQINF 191 (215)
T ss_pred HHHHHHHHHhhC-CcCCchHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877533323111 1111110 00112223555555555533331 11222221111111277899999999999
Q ss_pred HHHHHHHHHHhHHHH
Q 017347 244 HQRVLQILDQLEGEM 258 (373)
Q Consensus 244 h~q~~~iL~~L~~eL 258 (373)
+++.++++.+-.+..
T Consensus 192 FhQGyeL~~~~~~~~ 206 (215)
T cd07632 192 FKKGAELFSKKLDSF 206 (215)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999877654443
No 69
>KOG1702 consensus Nebulin repeat protein [Cytoskeleton]
Probab=98.39 E-value=2.6e-07 Score=83.27 Aligned_cols=55 Identities=29% Similarity=0.506 Sum_probs=51.5
Q ss_pred eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeec
Q 017347 307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERR 361 (373)
Q Consensus 307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l 361 (373)
...+++|||.+++.+|.+|.-||.|.-....++||..|.+ .|..|+.|.||++.+
T Consensus 208 ktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v 264 (264)
T KOG1702|consen 208 KTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV 264 (264)
T ss_pred ccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence 6789999999999999999999999999999999999987 999999999999864
No 70
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=98.36 E-value=3.2e-07 Score=92.76 Aligned_cols=57 Identities=23% Similarity=0.422 Sum_probs=50.9
Q ss_pred EEEEeccCCCCCCCCccCCCCCEEEEEeec---CCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347 308 LGEVVHPYQAESDVELTLSVGDYVVVRKVT---NNGWAEGECKGKAGWFPFGYIERRDRV 364 (373)
Q Consensus 308 ~~~alydf~a~~~~ELsl~~gd~I~V~~~~---~~gW~~G~~~g~~G~fP~~Yve~l~~~ 364 (373)
.+-|+|||+++.++||+|.+||-++|+... +.+||-++++|+.|+||.||+-....+
T Consensus 685 ~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyPri 744 (752)
T KOG0515|consen 685 VVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYPRI 744 (752)
T ss_pred eeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCccc
Confidence 478999999999999999999999999984 457999999999999999999776544
No 71
>KOG3601 consensus Adaptor protein GRB2, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=98.34 E-value=4.8e-07 Score=82.17 Aligned_cols=58 Identities=22% Similarity=0.406 Sum_probs=53.4
Q ss_pred CCceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347 304 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR 361 (373)
Q Consensus 304 ~~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l 361 (373)
.....+.++|||++..+++|.|..||+|.|+...+..||.|.+.|+.|+||++||...
T Consensus 161 ~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p~ 218 (222)
T KOG3601|consen 161 PTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAPS 218 (222)
T ss_pred ccchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCcccccc
Confidence 3446789999999999999999999999999999999999999999999999998654
No 72
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.33 E-value=0.0002 Score=65.44 Aligned_cols=199 Identities=12% Similarity=0.136 Sum_probs=119.5
Q ss_pred hHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 017347 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERG 126 (373)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~ 126 (373)
...+++|......+.+....+++...++-. . ...||.++...+..... ....++.++..+|.+...+.....
T Consensus 10 ~~~v~~le~~l~~l~~~~~~~~k~~~~l~~------~-~~elg~~~~~Ls~~e~~-~~~~l~~~~~~~~~~~~~~~~~~~ 81 (218)
T cd07596 10 KDYILKLEEQLKKLSKQAQRLVKRRRELGS------A-LGEFGKALIKLAKCEEE-VGGELGEALSKLGKAAEELSSLSE 81 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-HHHHHHHHHHHHhhccc-cchhhHHHHHHHHHHHHHHHHHHH
Confidence 344445554444444444456555544321 1 22578888888775431 112699999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH-HH--HhhhhccCC-----CCcchHHHHHHHHH
Q 017347 127 NLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEV-SK--RQAKVRETP-----GNPDLALKLDAAEV 198 (373)
Q Consensus 127 ~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~-k~--r~~K~~e~~-----~~~~~~~eL~~ae~ 198 (373)
.........|++||..++. -+..++..-.+.+.+...++.-.-++ ++ +..|.+..+ +...++.++..++.
T Consensus 82 ~~~~~~~~~~~e~L~~y~~--~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~ 159 (218)
T cd07596 82 AQANQELVKLLEPLKEYLR--YCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAES 159 (218)
T ss_pred HHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH
Confidence 9999999999999999985 45555533332233333333322223 11 111221111 11233445666666
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 017347 199 KLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 255 (373)
Q Consensus 199 K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~ 255 (373)
..+.++..+..+...+...+...+.....-.-..|..|++.+..|++.+.++|..+.
T Consensus 160 ~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~~~~W~~~~ 216 (218)
T cd07596 160 ALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFARLQVQYAEKIAEAWESLL 216 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 666666666665555665554443322211244888999999999999999887764
No 73
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=1.4e-07 Score=89.91 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=49.0
Q ss_pred eEEEEeccCCCCCCCCccCCCCCEEEEEeec-----CCCeEEEEe--CCeeeEecCCCeeeccC
Q 017347 307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT-----NNGWAEGEC--KGKAGWFPFGYIERRDR 363 (373)
Q Consensus 307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~-----~~gW~~G~~--~g~~G~fP~~Yve~l~~ 363 (373)
..|+|+|||.+.++.||+|++||.+.|..+. +..||.... +|..||||.|||+.+..
T Consensus 269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r 332 (362)
T KOG3875|consen 269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR 332 (362)
T ss_pred HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence 4699999999999999999999999998873 445777655 78999999999999865
No 74
>KOG4429 consensus Uncharacterized conserved protein, contains SH3 and FCH domains [General function prediction only]
Probab=98.23 E-value=8.2e-05 Score=70.70 Aligned_cols=55 Identities=24% Similarity=0.257 Sum_probs=52.0
Q ss_pred eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347 307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR 361 (373)
Q Consensus 307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l 361 (373)
..|.++|+|++..++||....||++.+-++..+|||.|+..|..|.||+.||+..
T Consensus 364 ~lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 364 ILCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA 418 (421)
T ss_pred HHhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence 5799999999999999999999999999999999999999999999999999864
No 75
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=98.22 E-value=0.0012 Score=61.78 Aligned_cols=197 Identities=16% Similarity=0.196 Sum_probs=121.7
Q ss_pred hHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCC-CCCChHHHHHHHHHHHHHHHHHHH
Q 017347 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTC-TSGNTLSKAALSYGRARAQMEKER 125 (373)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~-~~~s~~g~al~~~g~a~~~l~~~~ 125 (373)
++.+++|....+. |++.+.-.+-. +..+.+++.+-|.--.+ .+.-.+|.+|..+...++.++.-.
T Consensus 19 ~P~~~~li~~~~~---Y~kal~a~~~a-----------~~~~~dAl~kia~~A~~s~~sk~lG~~L~~i~~~~r~ie~~l 84 (223)
T cd07605 19 NPVLRNLIKAGKK---YQKALQALSQA-----------AKVFFDALAKIGELASQSRGSQELGEALKQIVDTHKSIEASL 84 (223)
T ss_pred ChhHHHHHHHHHH---HHHHHHHHHHH-----------HHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 5667777766544 66655222211 22345555555443211 133469999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHH
Q 017347 126 GNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYD----RMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLH 201 (373)
Q Consensus 126 ~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~----~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~ 201 (373)
+.+...+...+|.||..-++- +.|.+....++|. +.|.+|+...-|.++-+.|++.. +.+.....+..+.+.+.
T Consensus 85 ~~~~~~~~~~li~pLe~k~e~-d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~-~~~k~~~~l~~~~e~v~ 162 (223)
T cd07605 85 EQVAKAFHGELILPLEKKLEL-DQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKS-GTGKYQEKLDQALEELN 162 (223)
T ss_pred HHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCcccHHHHHHHHHHH
Confidence 999999999999999999985 8888876666563 44556666666663333332211 11222345666644444
Q ss_pred HHHHHHHHhhH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347 202 DLKSNMAILGK-EAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS 260 (373)
Q Consensus 202 e~~e~~~~L~k-ea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s 260 (373)
.-...|...-+ .+..+|.. +-..=-+.|.++..|++.+.+||......|++--..|..
T Consensus 163 ~k~~ele~~~~~~lr~al~E-ERrRyc~lv~~~c~v~~~e~~~~~~~~~~L~~~l~~w~~ 221 (223)
T cd07605 163 DKQKELEAFVSQGLRDALLE-ERRRYCFLVDKHCSVAKHEIAYHAKAMTLLSTRLPLWQE 221 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhh
Confidence 43333332222 23333332 222223448899999999999999999988877666653
No 76
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=98.21 E-value=0.00056 Score=62.79 Aligned_cols=165 Identities=14% Similarity=0.216 Sum_probs=127.6
Q ss_pred CCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHH
Q 017347 81 QVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYD 160 (373)
Q Consensus 81 ~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~ 160 (373)
|.+. .||+.+...|..-+ +- . |.+...+|++++-+++-+..+...+. .|+.-|..|+.. -+.|...=.++|+
T Consensus 37 q~q~--~lG~~f~~l~~~~~--~~-a-~~~f~~~~~a~r~~~k~g~~ll~~l~-~~~~~l~T~~~k-ai~DT~lTI~~ye 108 (203)
T cd00011 37 QTQH--ALGDAFADLSQKDP--EL-A-GEEFGYNAEAQKLLCKNGETLLGAVN-FFVSSINTLVTK-AIEDTLLTVKQYE 108 (203)
T ss_pred HHHH--HHHHHHHHHHhcCC--cH-H-HHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhh-hcchHHHHHHHHH
Confidence 4555 69999999999876 21 2 89999999999999999999988775 688999999987 8888875556699
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 017347 161 RMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240 (373)
Q Consensus 161 ~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAq 240 (373)
..|-+..+-|++++.-......+ ..---.+.+.++..+.+.++-+++|.+.+..-|--.+..+=++...+|..|..|.
T Consensus 109 ~aR~EY~a~~l~~ke~~~e~~~~--~~~~~~k~r~~q~~~~~~k~kf~kLr~Dv~~Kl~lL~~~r~~~l~~qL~~~~~al 186 (203)
T cd00011 109 AARLEYDAYRLDLKELSLEPRDD--TAGTRGRLRSAQATFQEHRDKFEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNTV 186 (203)
T ss_pred HHHHhHHHHHHHHHHhcccCCcc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999986653332111 0001237888888888888888888888888775545444444466999999999
Q ss_pred HHHHHHHHHHHHHhH
Q 017347 241 RTYHQRVLQILDQLE 255 (373)
Q Consensus 241 l~Yh~q~~~iL~~L~ 255 (373)
..||..+...|++..
T Consensus 187 ~~y~~~~~~~l~~~~ 201 (203)
T cd00011 187 SAYFAGNQKVLEQTL 201 (203)
T ss_pred HHHHHHhHHHHHHHh
Confidence 999999999998764
No 77
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=98.20 E-value=0.00093 Score=62.26 Aligned_cols=163 Identities=14% Similarity=0.225 Sum_probs=101.1
Q ss_pred HHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHH
Q 017347 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQE 165 (373)
Q Consensus 87 ~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~ 165 (373)
-||.++...|.-- ++..++.+|..+|++...++.....+...-...|.+||+.|+. -+.-++ .+..| +++...
T Consensus 63 e~~~~~~~la~~E---~~~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~--~~~svk~~l~~R-~~~~~~ 136 (236)
T PF09325_consen 63 EFGSSFSQLAKSE---EEKSLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLR--YIESVKEALNRR-DKKLIE 136 (236)
T ss_pred HHHHHHHHhhccc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHH-HHHHHH
Confidence 3566666555432 3457999999999999999999999999999999999998885 444444 33322 222233
Q ss_pred HHHHHHHHHHHh---hhhccCC-----CCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 017347 166 AEAQAIEVSKRQ---AKVRETP-----GNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMV 237 (373)
Q Consensus 166 le~rrld~k~r~---~K~~e~~-----~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~v 237 (373)
++.---++.+++ .|....+ +...+..++..++.+.+.++..+....+.+...+...+.+...-.-..|..|+
T Consensus 137 ~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~ 216 (236)
T PF09325_consen 137 YQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYA 216 (236)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333331111 1111110 11223455666666666666666665555665554433333211244899999
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 017347 238 EAERTYHQRVLQILDQLE 255 (373)
Q Consensus 238 eAql~Yh~q~~~iL~~L~ 255 (373)
+.+..|++++.++|..+.
T Consensus 217 ~~~i~~~~~~~~~We~~~ 234 (236)
T PF09325_consen 217 ESQIEYQKKMLEAWETFL 234 (236)
T ss_pred HHHHHHHHHHHHHHHhHc
Confidence 999999999999998764
No 78
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=98.19 E-value=0.00012 Score=67.12 Aligned_cols=138 Identities=12% Similarity=0.147 Sum_probs=92.2
Q ss_pred HHHHHHhhccCCCCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHH
Q 017347 89 SEDSRKYGSDNTCTSGNTLSKAALSYGRARAQM-EKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEA 166 (373)
Q Consensus 89 g~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l-~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~l 166 (373)
...|.-|+.+.+ .+ -.+...|..+...+ ..+..++...+...++.||..++. -++.++ .++| =
T Consensus 47 ~~~~d~y~~~~~--~~---~~~~~~~~~~~~~~~~~~~~e~~~~i~~~V~~Pl~~~~~--~~~~~~k~I~K--------R 111 (195)
T cd07589 47 EVVLDLYPSNHP--RL---ESKWERFRRVVRGISSKALPEFKSRVRKLVIEPLSSLLK--LFSGPQKLIQK--------R 111 (195)
T ss_pred HHHHHhccCCCh--hh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHH--------H
Confidence 444444665543 21 12334444444333 458889999999999999999996 677777 5455 4
Q ss_pred HHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR 246 (373)
Q Consensus 167 e~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q 246 (373)
+.+.+||-+-+.+.. ++..++.+++++++.+..|+..+...+.-...-...+.-.+|.+|+..|.+||..
T Consensus 112 ~~KllDYdr~~~~~~----------k~~k~e~~l~~a~~~y~~lN~~L~~ELP~l~~~~~~~l~~~~~s~~~~Q~~~~~~ 181 (195)
T cd07589 112 YDKLLDYERYKEKKE----------RGGKVDEELEEAANQYEALNAQLKEELPKFNQLTAQLLETCLKSFVELQRDLYDT 181 (195)
T ss_pred hhhhccHHHHHHHHH----------hhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678833333321 2445677777777777777777888887654444445566999999999999998
Q ss_pred HHHHH
Q 017347 247 VLQIL 251 (373)
Q Consensus 247 ~~~iL 251 (373)
..+.+
T Consensus 182 ~~~~~ 186 (195)
T cd07589 182 LLKRA 186 (195)
T ss_pred HHHHh
Confidence 88765
No 79
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=98.19 E-value=1.9e-07 Score=95.67 Aligned_cols=59 Identities=41% Similarity=0.694 Sum_probs=54.8
Q ss_pred CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeeccC
Q 017347 305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDR 363 (373)
Q Consensus 305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l~~ 363 (373)
+.+.+.++..|.+..++||+|..+|++.|+.+.++||++|++ .|..||||..||+.+..
T Consensus 607 dcpQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~ 667 (695)
T KOG3523|consen 607 DCPQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITN 667 (695)
T ss_pred CCChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcC
Confidence 457788999999999999999999999999999999999998 89999999999998754
No 80
>KOG4792 consensus Crk family adapters [Signal transduction mechanisms]
Probab=98.15 E-value=7.2e-06 Score=75.26 Aligned_cols=63 Identities=35% Similarity=0.397 Sum_probs=54.4
Q ss_pred CCCCceEEEEeccC--CCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347 302 DAMGYFLGEVVHPY--QAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV 364 (373)
Q Consensus 302 ~~~~~~~~~alydf--~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~ 364 (373)
.+..+.+|+|+++- .+-+...|.+.+||+|.|+....+|-|+|+++|+.|.||.+||+.+++-
T Consensus 223 ~~~lPa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~d~~ 287 (293)
T KOG4792|consen 223 QQNLPAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFTDVQ 287 (293)
T ss_pred ccCCChheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEeeccC
Confidence 34456678998874 4567889999999999999999999999999999999999999987653
No 81
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=1e-06 Score=86.78 Aligned_cols=54 Identities=24% Similarity=0.510 Sum_probs=49.8
Q ss_pred eEEEEeccCCCCCCCCccCCCCCEEEEEeec--CCCeEEEEeCCeeeEecCCCeee
Q 017347 307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIER 360 (373)
Q Consensus 307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~--~~gW~~G~~~g~~G~fP~~Yve~ 360 (373)
..+.++|+|.++..++|+|++||+|+++.+. ..+||.|..+|..|+||.|||..
T Consensus 417 n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 417 NIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL 472 (473)
T ss_pred ceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence 3799999999999999999999999999986 45799999999999999999964
No 82
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=98.11 E-value=0.001 Score=60.87 Aligned_cols=162 Identities=15% Similarity=0.213 Sum_probs=120.6
Q ss_pred CchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHH
Q 017347 82 VEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDR 161 (373)
Q Consensus 82 ~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~ 161 (373)
.+. -||+++..-|..-+ .+..+...+|++++.|+.--..+...++ .|+.-|..+++. -+.|...=.++|+.
T Consensus 38 tq~--~Lg~~f~~l~~k~p-----~l~~af~~~aet~k~l~kng~~Ll~al~-~f~s~l~T~~~k-ai~DT~lTI~~ye~ 108 (201)
T cd07660 38 TQK--ALGDAFADLSQKSP-----ELQEEFTYNAETQKLLCKNGETLLGALN-FFVSSLNTLVNK-TMEDTLMTVKQYES 108 (201)
T ss_pred HHH--HHHHHHHHHHhcCh-----HHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHh-hccHHHHHHHHHHh
Confidence 455 59999999999766 4578888999999999888777766654 688889999886 67777744456888
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 017347 162 MRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAER 241 (373)
Q Consensus 162 ~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql 241 (373)
.|-+.++-|+|+..-....+ ..+.-.+++.++.+|.++++-+++|.+.+...|--.+.++=++-..+|.-|+.|..
T Consensus 109 aR~EYdayr~D~ee~~~~~~----~~~~l~r~~~~q~~~~~~k~kf~KLR~DV~~Kl~lLeenrv~vm~~QL~~f~~a~~ 184 (201)
T cd07660 109 ARIEYDAYRNDLEALNLGPR----DAATSARLEEAQRRFQAHKDKYEKLRNDVSVKLKFLEENKVKVMHKQLLLFHNAIS 184 (201)
T ss_pred hhHhHHHHhccHHHcccCCC----ccchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 88888888877744222111 11223367778888888888888888889888865555553444569999999999
Q ss_pred HHHHHHHHHHHHhHH
Q 017347 242 TYHQRVLQILDQLEG 256 (373)
Q Consensus 242 ~Yh~q~~~iL~~L~~ 256 (373)
.||.-|.++|++.-.
T Consensus 185 ay~sgn~~~L~~~~~ 199 (201)
T cd07660 185 AYFSGNQKQLEQTLK 199 (201)
T ss_pred HHHHhHHHHHHHHHh
Confidence 999999999987643
No 83
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=98.09 E-value=0.0017 Score=60.05 Aligned_cols=159 Identities=20% Similarity=0.295 Sum_probs=106.6
Q ss_pred hhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHH
Q 017347 85 GTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMR 163 (373)
Q Consensus 85 ~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r 163 (373)
++.|+..+..|+++=. + ..-.+|..|+++...+..-+...+..+...++.||..|-. ..|.++ .+|+.....-
T Consensus 48 ~D~lak~l~~yA~~E~--~--~l~~~L~~fae~la~vqDYRqa~v~RlE~KVv~pL~~Y~~--~cK~~r~elK~~~~ar~ 121 (219)
T PF06730_consen 48 GDELAKQLQDYANTEN--P--NLKLGLKNFAECLAKVQDYRQAEVERLEAKVVEPLSQYGT--ICKHARDELKKFNKARN 121 (219)
T ss_pred hHHHHHHHHHHHhcCC--c--cHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 5578999999988532 3 4556999999999999999999999999999999999985 677777 6666222111
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHH----HHHHHHHH
Q 017347 164 QEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQ----RLIAMVEA 239 (373)
Q Consensus 164 ~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~----~L~~~veA 239 (373)
+++- +. +...|.+. ++|....-+-+|+..+..++-....-.+.+...|.+.+-+. |+ -|..||..
T Consensus 122 kEik-q~----~~Leklr~--k~psdr~~isqae~el~kas~~~~rt~~~Lee~i~~FEkqK----l~DlK~i~sdFv~i 190 (219)
T PF06730_consen 122 KEIK-QL----KQLEKLRQ--KNPSDRQIISQAESELQKASVDATRTTKQLEETIDNFEKQK----LKDLKKIFSDFVTI 190 (219)
T ss_pred HHHH-HH----HHHHHHHc--cCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 1111 11 11112211 12333334555665555555554444444666666666555 44 35588999
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 017347 240 ERTYHQRVLQILDQLEGEMLS 260 (373)
Q Consensus 240 ql~Yh~q~~~iL~~L~~eL~s 260 (373)
++-||.++.+++..-...+..
T Consensus 191 EM~fHaKALEv~T~a~q~i~~ 211 (219)
T PF06730_consen 191 EMVFHAKALEVYTAAYQDIQN 211 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999988887764
No 84
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=98.07 E-value=0.0018 Score=59.24 Aligned_cols=161 Identities=15% Similarity=0.229 Sum_probs=112.4
Q ss_pred HHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 017347 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (373)
Q Consensus 87 ~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~l 166 (373)
-||+.+..-|.-- +...+..+...+|++++.|++--..+...++ -|+..|.++++. -+.|...=.++|...|=+.
T Consensus 41 ~~Gd~Fa~l~~re---~~p~l~eeF~~~ae~hR~l~k~G~~ll~ai~-~~~s~l~T~l~K-aipDT~lTikkY~~ar~EY 115 (215)
T cd07659 41 EFGDLFANIGVRE---PQPAASEAFTKFGEAHRSIEKFGIELLKTLK-PMLSDLGTYLNK-AIPDTKLTIKKYADVKFEY 115 (215)
T ss_pred HHHHHHHHHHccC---CChhHHHHHHHhHHHHHHHHHhHHHHHHHhH-HHHHHHHHHHHh-hCchHHHHHHHHHHHHHHH
Confidence 5899999888752 2226889999999999999999999998876 689999999997 8999883344598889999
Q ss_pred HHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 017347 167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKL-------HDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEA 239 (373)
Q Consensus 167 e~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~-------~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veA 239 (373)
.+-|+|++-....-.......+.--.+..+.-.| ++.++-+++|.+.+..-|.-.|..+=+.-..+|..|+.|
T Consensus 116 ~ayc~kvkEmd~ee~~~~~~~e~l~rvetgnyeyrl~lRcrq~~r~kf~kLR~DV~vKlelLe~k~vk~i~~QL~~f~~a 195 (215)
T cd07659 116 LSYCLKVKEMDDEEYSYAALDEPLYRVETGNYEYRLILRCRQEARARFAKLRQDVLEKLELLDQKHVQDIVFQLQRFVSA 195 (215)
T ss_pred HHHHHHHHHhcccccccccccCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999988554221000000000111222233333 555555555555588877655555533346799999999
Q ss_pred HHHHHHHHHHHHH
Q 017347 240 ERTYHQRVLQILD 252 (373)
Q Consensus 240 ql~Yh~q~~~iL~ 252 (373)
...||..|.+++.
T Consensus 196 isay~~~~~~~~~ 208 (215)
T cd07659 196 LSEYHSDCHELLK 208 (215)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
No 85
>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]
Probab=98.07 E-value=0.0015 Score=61.40 Aligned_cols=205 Identities=19% Similarity=0.242 Sum_probs=137.2
Q ss_pred HHHHHHHHhcCCCCCCCCccccchHHhhh------hHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHH
Q 017347 18 QQQAVFKQFGGGGYGGSDNVVTDEAELHQ------HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSED 91 (373)
Q Consensus 18 ~~q~~~~~~~~~~~~~~~~~~~~e~e~~~------~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~ 91 (373)
++|-++.++| + ++-++-.|.|.|+ |...|.+...+++ |.-.+-..++. +. .||+.
T Consensus 108 tkQillEklG--k---~~rTVD~ElEaQie~Lrd~~rkY~~vl~lar~---fS~~l~qmv~t---------q~--~L~ds 168 (341)
T KOG3876|consen 108 TKQILLEKLG--K---GSRTVDLELEAQIEVLRDTKRKYESVLALARA---FSHHLTQMVET---------QH--ALGDS 168 (341)
T ss_pred HHHHHHHHhc--C---CccccCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH---------HH--HHHHH
Confidence 5677888887 2 3556655666663 5566666666555 55444444442 22 46666
Q ss_pred HHHhh-------ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 017347 92 SRKYG-------SDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ 164 (373)
Q Consensus 92 m~~~g-------~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~ 164 (373)
+.... .|||++ +++++-+++--+.++..+. -||..+..+++. -++|..+-.++|+..|-
T Consensus 169 FadLs~K~~elq~eft~n------------seTqr~l~kngetLl~aln-fFIsSvnTl~nk-Ti~DTL~Ti~qyEsARi 234 (341)
T KOG3876|consen 169 FADLSQKSPELQEEFTYN------------SETQRLLGKNGETLLGALN-FFISSVNTLVNK-TIEDTLMTIKQYESARI 234 (341)
T ss_pred HHHHhccCHHHHHHhCcC------------HHHHHHHhhhHHHHHHHHH-HHHHHHHHHHhh-hhHHHHHHHHHhhhhhh
Confidence 65443 455522 3456666666666665543 688888888886 78887766677999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 165 EAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYH 244 (373)
Q Consensus 165 ~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh 244 (373)
+.+.-|-|+-.-..+-++... ...+..|+.+|++-++.|.+|.+.+.--|.=.+.+.-.+--.+|.-|-.|...|+
T Consensus 235 EyDayR~Dle~~~l~P~~~~t----~~~le~aq~~~q~hkekYeKlrnDvaiKmkfLeENrIkVmh~QL~llhnAiaAYf 310 (341)
T KOG3876|consen 235 EYDAYRTDLEELTLGPRDALT----KNLLEGAQEKFQAHKEKYEKLRNDVAIKMKFLEENRIKVMHKQLELLHNAIAAYF 310 (341)
T ss_pred hhhhhhhhHHHhcCCcccccc----ccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 999888888433223222221 2368899999999999999999999988876666664434457888888888899
Q ss_pred HHHHHHHHHhHHHHH
Q 017347 245 QRVLQILDQLEGEML 259 (373)
Q Consensus 245 ~q~~~iL~~L~~eL~ 259 (373)
.-....|++--.++.
T Consensus 311 sGNak~LE~tlkqf~ 325 (341)
T KOG3876|consen 311 SGNAKQLEQTLKQFN 325 (341)
T ss_pred cccHHHHHHHHHHhc
Confidence 888777776665554
No 86
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=98.05 E-value=0.004 Score=58.23 Aligned_cols=200 Identities=12% Similarity=0.142 Sum_probs=126.0
Q ss_pred CCccccchHH-hh-hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHH
Q 017347 34 SDNVVTDEAE-LH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAA 111 (373)
Q Consensus 34 ~~~~~~~e~e-~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al 111 (373)
+|+...++.. +. -+.+|=+|+.+.+..-.-.+.+.-. ...+|.+|..-|+-- ....++++|
T Consensus 10 ~D~~F~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~--------------~~~f~~s~~~L~~~E---~~~~Ls~al 72 (224)
T cd07623 10 TDQWFEEKQQQIENLDQQLRKLHASVESLVNHRKELALN--------------TGSFAKSAAMLSNCE---EHTSLSRAL 72 (224)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhcc---cchhHHHHH
Confidence 5565544432 22 4677777777776633333333211 224677777777622 223799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH----HHHH---HHHHHHHHHHHHHHHHHHHhhhhccC-
Q 017347 112 LSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR----HLAQ---RYDRMRQEAEAQAIEVSKRQAKVRET- 183 (373)
Q Consensus 112 ~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~----~~k~---~y~~~r~~le~rrld~k~r~~K~~e~- 183 (373)
..+|++..+|+.........-...|.+||..|+. .+--++ .+.+ .|+.+.+.|..+|... .|....
T Consensus 73 ~~la~~~~ki~~~~~~qa~~d~~~l~e~L~eY~r--~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~----~Kl~~~~ 146 (224)
T cd07623 73 SQLAEVEEKIEQLHGEQADTDFYILAELLKDYIG--LIGAIKDVFHERVKVWQNWQNAQQTLTKKREAK----AKLELSG 146 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcC
Confidence 9999999999999999999999999999999985 333333 2211 1233333333333332 121111
Q ss_pred --CCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 017347 184 --PGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG 256 (373)
Q Consensus 184 --~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~ 256 (373)
.+..++..+++.++.+.++.+..+..+++-....|...+.+...=.-..|..|++.+..|..++.+.|..+..
T Consensus 147 ~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~We~~~p 221 (224)
T cd07623 147 RTDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYWEAFLP 221 (224)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1223446677778877777777777777767777766544442212447888999999999999888877643
No 87
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.04 E-value=0.00076 Score=62.00 Aligned_cols=129 Identities=19% Similarity=0.245 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchH-HH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 017347 106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDD-AR-HLAQRYDRMRQEAEAQAIEVSKRQAKVRET 183 (373)
Q Consensus 106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~-~~-~~k~~y~~~r~~le~rrld~k~r~~K~~e~ 183 (373)
.++.+|-.+|.+..++......+......+|++||+.|+. +-+ ++ -++.| +.....++..--.+.+++..
T Consensus 67 ~L~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey~~---y~~svk~~l~~R-~~~q~~~e~~~e~L~~k~~~---- 138 (200)
T cd07624 67 ELAPLLEGVSSAVERCTAALEVLLSDHEFVFLPPLREYLL---YSDAVKDVLKRR-DQFQIEYELSVEELNKKRLE---- 138 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH----
Confidence 5899999999999999999999999999999999999883 322 33 22221 11122222111111122211
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017347 184 PGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQL 254 (373)
Q Consensus 184 ~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L 254 (373)
+..++..|+.+|+...+. ..+.+.-.+.+...=.-..|..|++.+..|++++...|..+
T Consensus 139 -----l~~ev~~a~~~~e~~~~~-------~~~E~~rF~~~K~~d~k~~l~~~a~~qi~~~~~~~~~We~~ 197 (200)
T cd07624 139 -----LLKEVEKLQDKLECANAD-------LKADLERWKQNKRQDLKKILLDMAEKQIQYYEQCLAAWEEV 197 (200)
T ss_pred -----HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455788888888888776 44444333322211114489999999999999998888765
No 88
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=98.01 E-value=0.0018 Score=60.02 Aligned_cols=157 Identities=20% Similarity=0.192 Sum_probs=96.7
Q ss_pred HHHHHHHhhccCCCCCC-C-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHH----HHHHHH
Q 017347 88 LSEDSRKYGSDNTCTSG-N-TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHL----AQRYDR 161 (373)
Q Consensus 88 Lg~~m~~~g~e~~~~~~-s-~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~----k~~y~~ 161 (373)
..+++.+-|.---++.+ | .+|.+|..+...++.|+.-...|...+..+++.||+.-++- .-+.+..+ ++.|.+
T Consensus 48 f~Da~qKvad~A~~s~GaSkElG~~Ltri~~~hr~iE~~lk~f~~~L~~~lI~pLe~k~E~-wkk~~~~ldKd~~k~~kk 126 (231)
T cd07643 48 FLDAFQKIADAATNTRGATKEIGSALTRMCMRHKSIETKLKQFTSALMDCLVNPLQEKIEE-WKKVANQLDKDHAKEYKK 126 (231)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 56666666653332333 3 79999999999999999999999999999999999999983 33344343 456899
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 017347 162 MRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAER 241 (373)
Q Consensus 162 ~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql 241 (373)
+|.++..+-.|--+-++|.+.. .......|..|...+..-...+..+.+.+.+..+--+-.+--.++++|..+++.++
T Consensus 127 ~R~elKk~~~dt~klqkk~rKg--~~~~~~~ldsa~~dvn~k~~~lEe~ek~alR~aLiEER~Rfc~Fvs~l~pVl~~e~ 204 (231)
T cd07643 127 ARQEIKKKSSDTIRLQKKARKG--KGDLQPQLDSAMQDVNDKYLLLEETEKKAVRNALIEERGRFCTFVSFLKPVLDEEI 204 (231)
T ss_pred HHHHHHHHhhhHHHHHHHHhcc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9998875555541111111111 12233456666544333333333333333333333233332334888888888877
Q ss_pred HHHHHH
Q 017347 242 TYHQRV 247 (373)
Q Consensus 242 ~Yh~q~ 247 (373)
+.....
T Consensus 205 ~ml~E~ 210 (231)
T cd07643 205 SMLGEV 210 (231)
T ss_pred HHHhhH
Confidence 765544
No 89
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=98.00 E-value=0.0017 Score=60.28 Aligned_cols=139 Identities=14% Similarity=0.111 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHHHH-HhhhhccCCCC
Q 017347 109 KAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEVSK-RQAKVRETPGN 186 (373)
Q Consensus 109 ~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~k~-r~~K~~e~~~~ 186 (373)
.....+..+...|...-......+...++.|+..+.. .++.++ .+++ -++.+.+.+..+-.+.+ .+.|. ...
T Consensus 71 ~~~~~y~~~~~~l~~~~~~~l~~i~~~V~~P~~~~~~--~~~~i~k~IkK-R~~k~lDyd~~~~k~~k~~~~k~---~~~ 144 (216)
T cd07599 71 ARLSRYVKALEELKKELLEELEFFEERVILPAKELKK--YIKKIRKTIKK-RDHKKLDYDKLQNKLNKLLQKKK---ELS 144 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHhcCC---CCC
Confidence 3445566666666554444556888999999999996 788877 4444 22222233333333322 22221 112
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 187 PDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQ 253 (373)
Q Consensus 187 ~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~ 253 (373)
..-..+|..|+.+++++++.+..|+..+...+....+-...+.-..+.+|+-.|+.|+...+..|..
T Consensus 145 ~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~l~~ 211 (216)
T cd07599 145 LKDEKQLAKLERKLEEAKEEYEALNELLKSELPKLLALADEFLPPLFKSFYYIQLNIYYTLHEYLQE 211 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2236799999999999999999999999988876544443344458888999999999888776654
No 90
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=97.94 E-value=1.2e-06 Score=87.66 Aligned_cols=59 Identities=27% Similarity=0.471 Sum_probs=54.6
Q ss_pred CCceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeecc
Q 017347 304 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD 362 (373)
Q Consensus 304 ~~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~ 362 (373)
.+...++++.||...+++||.|+++|+|++++..|+-.|.|+.+|-+||||+.||+.++
T Consensus 546 ~~~krakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvelld 604 (848)
T KOG2222|consen 546 TGAKRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLD 604 (848)
T ss_pred hhhHHHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999875
No 91
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=97.90 E-value=0.015 Score=54.84 Aligned_cols=201 Identities=11% Similarity=0.125 Sum_probs=125.0
Q ss_pred CCccccchH-Hhh-hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhc-cCCCCCCChHHHH
Q 017347 34 SDNVVTDEA-ELH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS-DNTCTSGNTLSKA 110 (373)
Q Consensus 34 ~~~~~~~e~-e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~-e~~~~~~s~~g~a 110 (373)
+|+...+.. .+. -+.||-+|+.++...-.--+.+.- ...-+|.+|..-|. |. +..++++
T Consensus 20 ~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~--------------~~~efa~s~~~L~~~E~----~~~ls~~ 81 (234)
T cd07664 20 SDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSA--------------NTAAFAKSAAMLGNSED----HTALSRA 81 (234)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHcCcc----cchHHHH
Confidence 555553433 222 456666677666653222222211 12245777766666 43 2379999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH----HHH---HHHHHHHHHHHHHHHHH-HHHhhhhcc
Q 017347 111 ALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR----HLA---QRYDRMRQEAEAQAIEV-SKRQAKVRE 182 (373)
Q Consensus 111 l~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~----~~k---~~y~~~r~~le~rrld~-k~r~~K~~e 182 (373)
|..+|+.+.+|..........-.-.|-+||..|+. .+--++ .|. ..|+..-+.|..+|... |-+.. .+
T Consensus 82 l~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR--~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~-~k- 157 (234)
T cd07664 82 LSQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIR--LIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYA-NK- 157 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-Cc-
Confidence 99999999999999999999999999999999985 444443 111 12334444455444444 11110 01
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 017347 183 TPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG 256 (373)
Q Consensus 183 ~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~ 256 (373)
..+..++..+++.+|.+.++.+..+..+++-....+...+.+.-.=+-..|..|++.+..|..++.+.+..+..
T Consensus 158 ~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fles~ie~qke~ie~We~f~p 231 (234)
T cd07664 158 PDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLP 231 (234)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11234566788888877777777777776667766655544431112447888899999999999888877654
No 92
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=97.86 E-value=1.4e-05 Score=83.23 Aligned_cols=57 Identities=28% Similarity=0.523 Sum_probs=49.1
Q ss_pred CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCC-eEEEEe-CCeeeEecCCCeeecc
Q 017347 305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNG-WAEGEC-KGKAGWFPFGYIERRD 362 (373)
Q Consensus 305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~g-W~~G~~-~g~~G~fP~~Yve~l~ 362 (373)
+....+|||||.+..+..|++.+||.+.|+..+.+| |++.+. +|+ ||||+||+..+.
T Consensus 89 dpNLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPvN 147 (1157)
T KOG4278|consen 89 DPNLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPVN 147 (1157)
T ss_pred CCceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCC-cccccccccccc
Confidence 344789999999999999999999999999988554 888887 565 999999998764
No 93
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=97.85 E-value=0.016 Score=53.85 Aligned_cols=164 Identities=11% Similarity=0.132 Sum_probs=107.9
Q ss_pred HHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 017347 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (373)
Q Consensus 87 ~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~l 166 (373)
-||.++..-|.-- .+..++.+|..||++..++..........-.-.|.+||+.|+. .+.-++..-.+-.++...+
T Consensus 43 efa~~~~~L~~~E---~~~~l~~~l~~~a~~~~~~~~~~~~~a~~e~~~l~~~L~ey~r--~~~Svk~~~~~R~~~~~~~ 117 (216)
T cd07627 43 EFAETLEALSSLE---LSKSLSDLLAALAEVQKRIKESLERQALQDVLTLGVTLDEYIR--SIGSVRAAFAQRQKLWQYW 117 (216)
T ss_pred HHHHHHHHHHHhh---cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 4677777777632 2347999999999999999999999888888888889999885 4444442222122223333
Q ss_pred HHHHHHH-HHH--hhhhccC-----CCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 017347 167 EAQAIEV-SKR--QAKVRET-----PGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVE 238 (373)
Q Consensus 167 e~rrld~-k~r--~~K~~e~-----~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~ve 238 (373)
++---++ +++ ..|.... .+...+..+++.++.+.++++..+..+++.+...+...+.+...=.-..|..|++
T Consensus 118 ~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e 197 (216)
T cd07627 118 QSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLE 197 (216)
T ss_pred HHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322233 221 1222111 0112456677778888888888877777778887766554443222558889999
Q ss_pred HHHHHHHHHHHHHHHhH
Q 017347 239 AERTYHQRVLQILDQLE 255 (373)
Q Consensus 239 Aql~Yh~q~~~iL~~L~ 255 (373)
++..+++.+.+.|..+.
T Consensus 198 ~~ie~~k~~ie~We~f~ 214 (216)
T cd07627 198 SAIESQKELIELWETFY 214 (216)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999998887764
No 94
>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=6.9e-06 Score=81.87 Aligned_cols=60 Identities=28% Similarity=0.544 Sum_probs=53.1
Q ss_pred EEEEeccCCCCCCCCccCCCCCEEEEEeec-CCCeEEEEe-CCeeeEecCCCeeeccCCCch
Q 017347 308 LGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGEC-KGKAGWFPFGYIERRDRVLAS 367 (373)
Q Consensus 308 ~~~alydf~a~~~~ELsl~~gd~I~V~~~~-~~gW~~G~~-~g~~G~fP~~Yve~l~~~p~~ 367 (373)
++|++|||..++.+||++..||++.+.+.. .+|||+|.+ .|..|+||+.||+++...-++
T Consensus 4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~~a~~s 65 (490)
T KOG2528|consen 4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTRLAVAS 65 (490)
T ss_pred chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeeccccch
Confidence 589999999999999999999999988764 789999999 999999999999998654333
No 95
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.79 E-value=0.011 Score=55.60 Aligned_cols=216 Identities=13% Similarity=0.119 Sum_probs=119.3
Q ss_pred HHHHHHhcCCCCCCCCccccchHHhhhhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCC-chhhHHHHHHHHhhcc
Q 017347 20 QAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQV-EIGTKLSEDSRKYGSD 98 (373)
Q Consensus 20 q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~-e~~~~Lg~~m~~~g~e 98 (373)
-+++|||+ --| |+.- |++..--+-|.+=.+ .+++...++.+... -+++ -...-+|..+...|..
T Consensus 4 rk~lkq~~-~p~---d~~~----el~~~rp~vk~~y~~------~~~l~~~~~~lvk~-rr~La~~~~dfg~~l~~Ls~~ 68 (230)
T cd07625 4 RKTLKQFA-PPY---DEYT----ELAEFRPLVKSIYLT------AQDLQEKLLRVSKA-RKQLSLEEADFGQKLIQLSVE 68 (230)
T ss_pred HHhhhccC-cCC---CCCH----HHHHhhHHHHHHHHH------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhh
Confidence 36899998 333 6655 888555555543221 22344444433210 1110 0112578888888775
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHH------HHHHHHHHHH
Q 017347 99 NTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDR------MRQEAEAQAI 171 (373)
Q Consensus 99 ~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~------~r~~le~rrl 171 (373)
-+ ...+|+|+.++|++...++.........-...|-+||..++. +.-.++ .+..|+.- +-+.+.++|.
T Consensus 69 E~---~~~L~~a~~kLg~v~~~v~dl~~~QA~~d~~tl~d~L~~~~~--~~~~vKealtnR~~~~re~~qAq~~~~~K~~ 143 (230)
T cd07625 69 ET---HHGLGNLYEKFGKVLTAVGDIDSIQATVDMATLYDGLEWISR--DAYVVKEALTNRHLLMRELIQAQQNTKSKQE 143 (230)
T ss_pred cc---cchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 347999999999999999999999999999999999999885 444444 33333222 2222333333
Q ss_pred HHHHHhhhhc-cCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 172 EVSKRQAKVR-ETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQI 250 (373)
Q Consensus 172 d~k~r~~K~~-e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~i 250 (373)
...+-+.+.. ...+..++..+|+.|+.+-+++...+..+.......+...+.....-.-..|..|+..+..|+++....
T Consensus 144 ~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie~erk~l~~ 223 (230)
T cd07625 144 AARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIEYERKKLSL 223 (230)
T ss_pred HHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3311111100 000122334455555444444443333333323333322211111101448889999999999999888
Q ss_pred HHHhH
Q 017347 251 LDQLE 255 (373)
Q Consensus 251 L~~L~ 255 (373)
|+.+.
T Consensus 224 lE~~r 228 (230)
T cd07625 224 LERIR 228 (230)
T ss_pred HHhcc
Confidence 77653
No 96
>KOG4773 consensus NADPH oxidase [Energy production and conversion]
Probab=97.65 E-value=6e-06 Score=79.99 Aligned_cols=62 Identities=21% Similarity=0.419 Sum_probs=56.9
Q ss_pred CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCCCc
Q 017347 305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLA 366 (373)
Q Consensus 305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~p~ 366 (373)
....+.+++||.+....||.|.+||++.+....+.+||.|...|.+||||.+|+..++..|.
T Consensus 174 ~~q~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~fpe 235 (386)
T KOG4773|consen 174 AAQRAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDDFPE 235 (386)
T ss_pred hhHHHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhccCcc
Confidence 34568899999999999999999999999999999999999999999999999999876665
No 97
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=97.61 E-value=5.8e-05 Score=77.58 Aligned_cols=100 Identities=14% Similarity=0.274 Sum_probs=69.1
Q ss_pred hhhHHHHHhhhhcccccCCCCC-CchhhHHHHHHHHhhccCCC---CCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017347 60 GKHFQRDIVRGVEGYIVTGSKQ-VEIGTKLSEDSRKYGSDNTC---TSGNT-LSKAALSYGRARAQMEKERGNLLKALGT 134 (373)
Q Consensus 60 ~k~~~~~i~r~~e~~~~~~~~~-~e~~~~Lg~~m~~~g~e~~~---~~~s~-~g~al~~~g~a~~~l~~~~~~~~~~~~~ 134 (373)
|..|.|.|.+..-.+++- .+. .-...++++.+..+-=|.=+ ++|.. .+.+|..||....+++++|..++.++..
T Consensus 32 tnkfik~~ikdg~~li~a-~knls~a~~kfa~tl~~f~f~~igd~~tdde~~ia~slkefa~ll~~ve~er~~~v~~Ase 110 (812)
T KOG1451|consen 32 TNKFIKELIKDGKELISA-LKNLSSAVRKFAQTLQEFKFECIGDAETDDEIFIATSLKEFASLLNQVEDERMRMVGNASE 110 (812)
T ss_pred HHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHhheeeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 344788887776655542 222 12234566666655433221 12222 4889999999999999999999999999
Q ss_pred hhhHHHHHHhcCCCchHHHHHHHHHHH
Q 017347 135 QVAEPLRAMVLGAPLDDARHLAQRYDR 161 (373)
Q Consensus 135 ~fl~PL~~~~~~~~lk~~~~~k~~y~~ 161 (373)
.+|+||..|-.- ++-.+.+.|+.||+
T Consensus 111 ~li~PlekFRkE-qIG~~KE~KkKydK 136 (812)
T KOG1451|consen 111 SLIEPLEKFRKE-QIGTLKEEKKKYDK 136 (812)
T ss_pred HHHhHHHHHHHH-HhhhhHHHHhhhhh
Confidence 999999999875 77766677888876
No 98
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.58 E-value=0.06 Score=50.98 Aligned_cols=134 Identities=15% Similarity=0.176 Sum_probs=87.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 017347 105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEVSKRQAKVRET 183 (373)
Q Consensus 105 s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~k~r~~K~~e~ 183 (373)
..+|.+|-.+|.+..+++..-......+..+|++||+.|+. =...++ -+++| +.+-.+++.++-...+.+. +
T Consensus 106 ~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~--y~~slK~vlk~R-~~~Q~~le~k~e~l~k~~~----d 178 (243)
T cd07666 106 EELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVL--YSETLMGVIKRR-DQIQAELDSKVEALANKKA----D 178 (243)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhh----h
Confidence 35999999999999999999999999999999999999984 222233 33332 3334445544444422111 1
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017347 184 PGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQL 254 (373)
Q Consensus 184 ~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L 254 (373)
+ ..+..+++.+++|.++.... +...|...+.+..+=.-.-+..|++-+..|+++|...++.+
T Consensus 179 -r-~~~~~ev~~~e~kve~a~~~-------~k~e~~Rf~~~k~~D~k~~~~~yae~~i~~~~~~~~~We~f 240 (243)
T cd07666 179 -R-DLLKEEIEKLEDKVECANNA-------LKADWERWKQNMQTDLRSAFTDMAENNISYYEECLATWESF 240 (243)
T ss_pred -H-HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 24566788888888887555 44444333333311113378888999999999998877654
No 99
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.52 E-value=0.065 Score=48.67 Aligned_cols=139 Identities=11% Similarity=0.142 Sum_probs=85.9
Q ss_pred HHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Q 017347 88 LSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAE 167 (373)
Q Consensus 88 Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le 167 (373)
||..+..-|.--+ ..+|.+|-.+|.+...++.....+...+..+|++||+.++. +-.+ +|. +.+.=+
T Consensus 44 fg~~~~~L~~~E~----~~L~~~l~~~~~~~~~~s~~~~~l~~~~~~~f~~~Lkd~~~---y~~s--~k~----~lk~R~ 110 (185)
T cd07628 44 LATQFQKLGSLES----GEITEPFKIFSESLSQFSTSLRVLNKYTDENYLTSLKDLLH---YILS--LKN----LIKLRD 110 (185)
T ss_pred HHHHHHHHHhhCc----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHH----HHHHHH
Confidence 5555555554322 13999999999999999999999999999999999999883 2111 111 111122
Q ss_pred HHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 168 AQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRV 247 (373)
Q Consensus 168 ~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~ 247 (373)
..++||-.-..-. ...++..|+.+++..-.. +.+.+...+.....=.-..|.+|.+.+..|++.+
T Consensus 111 ~kq~d~e~l~e~l--------l~~~ve~a~~~~e~f~~~-------~~~E~~rF~~~k~~elk~~l~~~a~~qi~~y~~~ 175 (185)
T cd07628 111 QKQLDYEELSDYL--------LTDEVENAKETSDAFNKE-------VLKEYPNFERIKKQEIKDSLGALADGHIDFYQGL 175 (185)
T ss_pred HHHHhHHHHHHHH--------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334441110000 122455555555555444 5655644332222112458999999999999999
Q ss_pred HHHHHHh
Q 017347 248 LQILDQL 254 (373)
Q Consensus 248 ~~iL~~L 254 (373)
...+..+
T Consensus 176 ~~~W~~~ 182 (185)
T cd07628 176 VEDWEKV 182 (185)
T ss_pred HHHHHhh
Confidence 8888765
No 100
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=97.51 E-value=0.027 Score=53.09 Aligned_cols=147 Identities=10% Similarity=0.106 Sum_probs=97.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH----HHHHH---HHHHHHHHHHHHHHHHHHh
Q 017347 105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR----HLAQR---YDRMRQEAEAQAIEVSKRQ 177 (373)
Q Consensus 105 s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~----~~k~~---y~~~r~~le~rrld~k~r~ 177 (373)
..++++|..+|+.+.+|............-+|-+||..|+. -+--++ .|.+- |+.+-..|..+|....+..
T Consensus 76 ~~Ls~als~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiR--li~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~ 153 (234)
T cd07665 76 TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLADYIR--LLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLL 153 (234)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999998885 222222 33332 3445555655555552221
Q ss_pred hhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhH
Q 017347 178 AKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQ-RLIAMVEAERTYHQRVLQILDQLE 255 (373)
Q Consensus 178 ~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~-~L~~~veAql~Yh~q~~~iL~~L~ 255 (373)
...+. .+...+..+++.++.|.++.+..+..+++-....+...+.+.-. .++ .+..|++++.....++.+.+..+.
T Consensus 154 ~~~~~-dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~-Dfk~~v~~fles~ie~qke~ie~We~fl 230 (234)
T cd07665 154 WANKP-DKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSK-DFKNHIIKYLETLLHSQQQLVKYWEAFL 230 (234)
T ss_pred hcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11111 12335566777777777777777777766677666555444410 122 477788888888888877776654
No 101
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=97.44 E-value=0.014 Score=53.82 Aligned_cols=150 Identities=13% Similarity=0.171 Sum_probs=88.3
Q ss_pred HHHHHHHhhccCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHH-HHHHHHHHHHHH
Q 017347 88 LSEDSRKYGSDNT--CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDA-RHLAQRYDRMRQ 164 (373)
Q Consensus 88 Lg~~m~~~g~e~~--~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~-~~~k~~y~~~r~ 164 (373)
|+.++.+||.-|. +..+..+|.+|-.+|.+....+..-+.+... ..+|++||+.++. +-++ +..-+..+-..-
T Consensus 47 l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~~~~~-~~~f~e~LkEy~~---ya~slk~vlk~r~~~q~ 122 (201)
T cd07622 47 VYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDNGLED-EELIADQLKEYLF---FADSLRAVCKKHELLQY 122 (201)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5666667776554 1344578999999999999888888887765 4889999999983 3332 222221111112
Q ss_pred HHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 165 EAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYH 244 (373)
Q Consensus 165 ~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh 244 (373)
+++..- |+..++. . +...+++.|+..+++..+. +.+.+...+.+...=.-..|.+|++.|..|+
T Consensus 123 ~~e~~~-~~L~~k~--~------~l~~~ve~a~~~~e~f~~~-------~~~E~~rF~~~K~~dlk~~l~~~A~~qi~~~ 186 (201)
T cd07622 123 DLEKAE-DALANKK--Q------QGEEAVKEAKDELNEFVKK-------ALEDVERFKKQKVRDLKEILISYAKLQIKLA 186 (201)
T ss_pred HHHHHH-HHHHHHH--H------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 2211110 0 1234555555554444333 5555544333321111448999999999999
Q ss_pred HHHHHHHHHhHHH
Q 017347 245 QRVLQILDQLEGE 257 (373)
Q Consensus 245 ~q~~~iL~~L~~e 257 (373)
+.+..+|..+.+-
T Consensus 187 ~~~~~~W~~~~~~ 199 (201)
T cd07622 187 KKGLQTWTNIKEC 199 (201)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887653
No 102
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.34 E-value=0.089 Score=47.87 Aligned_cols=141 Identities=13% Similarity=0.151 Sum_probs=81.2
Q ss_pred HHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchH-HHHHHHHHHHHHHHH
Q 017347 88 LSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDD-ARHLAQRYDRMRQEA 166 (373)
Q Consensus 88 Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~-~~~~k~~y~~~r~~l 166 (373)
||..+-..+..- ++..++.+|-++|.|.......-+.+...+..+|.+||+.++. +-. ++.+-+ |+
T Consensus 45 lG~~fn~ls~~E---~~~~L~~~le~~g~a~D~~~~~~~~l~~~l~~~f~EpL~E~~~---y~~s~k~vlk-~R------ 111 (187)
T cd07629 45 LGGRFNAFSLEE---QKSELAEALEKVGQAVDSTYLATEALVGSLYYNINEPLSESAQ---FAGVVRELLK-YR------ 111 (187)
T ss_pred HHHHHHHHhhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHH-HH------
Confidence 344444444432 2236899999999999999999999999999999999999983 322 222222 11
Q ss_pred HHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR 246 (373)
Q Consensus 167 e~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q 246 (373)
..+.++|..-..-. -.++..+..++.+..+. . ....|.-...+...-.=.-|..|...+..|..+
T Consensus 112 ~~K~~Q~e~l~~~L---------~e~~~~~~~~~~~~~~~--~----~~~el~rF~~ek~~dl~~~l~~~a~~~~~~a~~ 176 (187)
T cd07629 112 KLKHVQYEMTKDSL---------LESALVAASDDLVISST--I----KQKDLPRFQREREADLREILKNYSKYHKDWAKQ 176 (187)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH--H----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 11122221111111 11333444455555322 1 112221111111100033788899999999999
Q ss_pred HHHHHHHhHH
Q 017347 247 VLQILDQLEG 256 (373)
Q Consensus 247 ~~~iL~~L~~ 256 (373)
|.++|..++.
T Consensus 177 ~~~~W~~~~~ 186 (187)
T cd07629 177 NLEAWKEAKA 186 (187)
T ss_pred HHHHHHHhhc
Confidence 9999988764
No 103
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.31 E-value=0.0071 Score=66.11 Aligned_cols=116 Identities=16% Similarity=0.242 Sum_probs=87.9
Q ss_pred HHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 017347 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (373)
Q Consensus 87 ~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~l 166 (373)
.+|.-...+....+ .+-..|.+|.+|..+.+.+......+...+...+..||..|.++ |+.+++..|+.++++.++.
T Consensus 60 ~f~~~~~d~~~~~~--~~~~~~~~l~~fs~~~~e~~~~~~~L~~q~~~~~~~~l~~f~k~-dl~~v~~~kk~f~ka~~~~ 136 (785)
T KOG0521|consen 60 QFGKGLKDLFSLGQ--DEEVISETLQKFSKVLRELGTYHTELRSQLAHTLSLPLSQFVKG-DLHEVKELKKLFEKASEEY 136 (785)
T ss_pred HHHHHHHHHHHhcc--CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHhhhhhHHHHHHHhhH
Confidence 34444444433333 44467899999999999999999999999999999999999999 9999998899999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHH
Q 017347 167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSN 206 (373)
Q Consensus 167 e~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~ 206 (373)
+.-+.-+.+...+.+ .....+.+.+|..+..+|.-+.-.
T Consensus 137 d~a~~k~~~l~k~~~-~~~~~e~~~~l~~~r~~f~~~~~~ 175 (785)
T KOG0521|consen 137 DLALVKYSRLPKKRR-SKVKTEVEEELAAARRKFQLTALD 175 (785)
T ss_pred HHHHHHhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHH
Confidence 988877722211111 222345566888888888887666
No 104
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.29 E-value=0.14 Score=47.03 Aligned_cols=188 Identities=11% Similarity=0.065 Sum_probs=107.8
Q ss_pred CCccccchHHhh--hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhc-cCCCCCCChHHHH
Q 017347 34 SDNVVTDEAELH--QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS-DNTCTSGNTLSKA 110 (373)
Q Consensus 34 ~~~~~~~e~e~~--~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~-e~~~~~~s~~g~a 110 (373)
+|++..++...- .|.+|-+++..+...-.-.+.+... ...+|.++..-|+ |.+ +...++++
T Consensus 2 ~D~~F~~~k~yl~~l~~~lk~~~~~~~~lv~~rk~la~~--------------~~~fs~al~~L~~~E~~--~~~~l~~~ 65 (198)
T cd07630 2 VDEFFQKERDMNTKLSANMKEAAEKFLKIVNTEQRLANA--------------LGHLSSSLQLCVGLDEA--SVVALNRL 65 (198)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhccccc--chHhHHHH
Confidence 355554554333 6778888887777644444444221 1134555544443 333 33378999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhccCCCCcch
Q 017347 111 ALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEV-SKRQAKVRETPGNPDL 189 (373)
Q Consensus 111 l~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~-k~r~~K~~e~~~~~~~ 189 (373)
|.++|++..++..........-...|-+||+.|+. .+.-++.+-.+--+.....++---++ |+| .+.+ ..+
T Consensus 66 l~~lse~~e~i~~~~~~~a~~d~~~Lg~~L~~Y~r--~i~a~K~~l~~R~~~~~~~~~a~k~l~Kar-~~k~-----~~a 137 (198)
T cd07630 66 CTKLSEALEEAKENIEVVAGNNENTLGLTLDLYSR--YSESEKDMLFRRTCKLIEFENASKALEKAK-PQKK-----EQA 137 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HhhH-----HHH
Confidence 99999999999999999999999999999999885 44333322111111122222222222 222 2211 134
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 190 ALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILD 252 (373)
Q Consensus 190 ~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~ 252 (373)
+...+.|+.+|++..+. +...|...+.+.-.-.=..|..|++.+..--..+.++|.
T Consensus 138 e~~~~~a~~~fe~iS~~-------~k~EL~rF~~~Rv~~fk~~l~~~~E~~i~~ak~~~~~~~ 193 (198)
T cd07630 138 EEAKKKAETEFEEISSL-------AKKELERFHRQRVLELQSALVCYAESQIKNAKEAAAVLT 193 (198)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777776 666665554444100112566777777766666655544
No 105
>KOG3557 consensus Epidermal growth factor receptor kinase substrate [Signal transduction mechanisms]
Probab=97.27 E-value=0.00014 Score=75.60 Aligned_cols=59 Identities=22% Similarity=0.314 Sum_probs=51.2
Q ss_pred CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeeccCC
Q 017347 305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDRV 364 (373)
Q Consensus 305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l~~~ 364 (373)
....+.++|||.+.+..||++.+||++.|+... -+||++.. .|+.|+||+|-+..+.+.
T Consensus 499 ~~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d~-R~WW~~kn~~G~~GyvP~nIL~~~~~~ 558 (721)
T KOG3557|consen 499 GKKWVLVLYDFQARNSSELSVKKGEVLEVLDDG-RKWWKVKNGHGRAGYVPSNILAPLQPE 558 (721)
T ss_pred cceeeeeehhhhcccchhhhhhhhhhhhhhhcc-ccceeccCccCCCCCcchhhhccCCCc
Confidence 345789999999999999999999999998864 57999998 899999999988776543
No 106
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=96.92 E-value=0.35 Score=45.05 Aligned_cols=177 Identities=16% Similarity=0.182 Sum_probs=98.7
Q ss_pred CCCccccchH-Hhh-hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHH
Q 017347 33 GSDNVVTDEA-ELH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKA 110 (373)
Q Consensus 33 ~~~~~~~~e~-e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~a 110 (373)
-+|++..+|- .+. .|.+|=+++..++..-..-+.+.- + - + .+|..|..-+.| .++.++++
T Consensus 20 e~D~~Fe~~k~~l~~l~~~Lk~a~~~~~~lv~~rkela~------~------~-~-~~s~al~~l~~e----e~t~L~ka 81 (218)
T cd07663 20 EVDEFFEQEKTFLVNYYNRIKDSCAKADKMTRSHKNVAD------D------Y-I-HISAALNSVAAE----EPTVIKKY 81 (218)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H------H-H-HHHHHHHhhccc----ccchHHHH
Confidence 4667665554 333 688888888887765444444422 0 0 1 344444433332 44479999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHH--HHHHHHHHH-HHHhhhhccCCCCc
Q 017347 111 ALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ--EAEAQAIEV-SKRQAKVRETPGNP 187 (373)
Q Consensus 111 l~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~--~le~rrld~-k~r~~K~~e~~~~~ 187 (373)
|.++|+...+|...+.....+---.|-++|+.|+. ++.-++.+- |+|+|. ..++-.-.+ |+| .+.++ .+
T Consensus 82 ls~lae~~Ek~~~l~~r~A~~d~~~L~e~L~~Y~r--~~~A~K~ll--~rR~ral~~~e~A~~~L~KaR-~k~ke---v~ 153 (218)
T cd07663 82 LLKVAELFEKLRKVEDRVASDQDLKLTELLRYYML--NIEAAKDLL--YRRARALADYENSNKALDKAR-LKSKD---VK 153 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-hhhhh---HH
Confidence 99999999999999999999999999999999885 444443211 122221 122211122 222 22111 12
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 017347 188 DLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERT 242 (373)
Q Consensus 188 ~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~ 242 (373)
+++.+++.|+.+|++..+. +...|...+.+.-.-.=..|..|.+.++.
T Consensus 154 ~aE~~~~ea~~~Fe~IS~~-------~k~El~rF~~~Rv~~Fk~~lve~~E~~ik 201 (218)
T cd07663 154 QAEAHQQECCQKFEKLSES-------AKQELISFKRRRVAAFRKNLIEMTELEIK 201 (218)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344555555556555555 77667665544410001245555555544
No 107
>KOG3632 consensus Peripheral benzodiazepine receptor PRAX-1 [Signal transduction mechanisms; Cytoskeleton]
Probab=96.88 E-value=0.0012 Score=71.61 Aligned_cols=55 Identities=20% Similarity=0.363 Sum_probs=47.0
Q ss_pred eEEEEeccCCCC--------CCCCccCCCCCEEEEEee-cCCCeEEEEeCCeeeEecCCCeeec
Q 017347 307 FLGEVVHPYQAE--------SDVELTLSVGDYVVVRKV-TNNGWAEGECKGKAGWFPFGYIERR 361 (373)
Q Consensus 307 ~~~~alydf~a~--------~~~ELsl~~gd~I~V~~~-~~~gW~~G~~~g~~G~fP~~Yve~l 361 (373)
...+|+|||++- .+.||+|++|+||.|+.. +.+|++.|+++|+.|++|+|+|..+
T Consensus 1139 rifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~ 1202 (1335)
T KOG3632|consen 1139 RIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQ 1202 (1335)
T ss_pred eeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccc
Confidence 456889999863 356899999999998876 4678999999999999999999864
No 108
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=96.88 E-value=0.38 Score=44.73 Aligned_cols=94 Identities=11% Similarity=0.125 Sum_probs=65.6
Q ss_pred CCccccchH-Hhh-hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHH
Q 017347 34 SDNVVTDEA-ELH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAA 111 (373)
Q Consensus 34 ~~~~~~~e~-e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al 111 (373)
+|++..+|. +|. +|.+|-+|+.+++..-..-+.+.-.. ..+|.++..-|+. ..+.++++|
T Consensus 21 ~D~wFe~ek~~l~~~~~~Lk~~~~~~e~l~~~rk~la~~~--------------~~~s~sl~~L~~~----e~t~L~~~l 82 (218)
T cd07662 21 VDDFFEHERTFLLEYHNRVKDSSAKSDRMTRSHKSAADDY--------------NRIGSSLYTLGTQ----DSTDICKFF 82 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhccc----cchhHHHHH
Confidence 567776665 555 89999999999888655555442211 1345554444443 334799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhc
Q 017347 112 LSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL 145 (373)
Q Consensus 112 ~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~ 145 (373)
.+++++..+|.+........=.-.+.+-|+-|+.
T Consensus 83 ~~laev~eki~~l~~~~A~~e~l~L~e~L~~Y~r 116 (218)
T cd07662 83 LKVSELFDKTRKIEARVAADEDLKLSDLLKYYLR 116 (218)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 9999999999999888877666667777777764
No 109
>KOG4575 consensus TGc (transglutaminase/protease-like) domain-containing protein involved in cytokinesis [Cell cycle control, cell division, chromosome partitioning]
Probab=96.82 E-value=0.0014 Score=68.19 Aligned_cols=56 Identities=16% Similarity=0.332 Sum_probs=47.5
Q ss_pred ceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeec
Q 017347 306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERR 361 (373)
Q Consensus 306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l 361 (373)
+..++|+|-+.++.+++|.|.+||+|.++...++-||.+.+ ....|+||+|||--+
T Consensus 8 p~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcL 65 (874)
T KOG4575|consen 8 PCMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCL 65 (874)
T ss_pred CceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeec
Confidence 45689999999999999999999999999987766676665 457899999999544
No 110
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=96.77 E-value=0.00079 Score=71.71 Aligned_cols=60 Identities=17% Similarity=0.478 Sum_probs=52.9
Q ss_pred CCCceEEEEeccCCCCCCCCccCCCCCEEEEEeec-CCCeEEEE--eCCeeeEecCCCeeecc
Q 017347 303 AMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGE--CKGKAGWFPFGYIERRD 362 (373)
Q Consensus 303 ~~~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~-~~gW~~G~--~~g~~G~fP~~Yve~l~ 362 (373)
.+..+.|.++|.|.+.+++++++.+|+++.|++.. .+||-+++ ++|..|+||.+||+.+.
T Consensus 575 ~p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~ 637 (640)
T KOG3565|consen 575 SPPIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTE 637 (640)
T ss_pred CCCccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence 34557899999999999999999999999988875 77999999 69999999999998753
No 111
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=96.75 E-value=0.37 Score=45.24 Aligned_cols=91 Identities=13% Similarity=0.118 Sum_probs=62.7
Q ss_pred hHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCC--chhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHH
Q 017347 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQV--EIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE 124 (373)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~--e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~ 124 (373)
+.|++-|+.+++.+..+.+.|..-.-- --.+ +.+..|+.-..+|+.-. ....|..++..+=.....|+..
T Consensus 4 d~G~~~l~~r~~~g~~~~~el~~f~ke-----Ra~iE~eYak~L~kLakk~~~~~---~~gsl~~a~~~i~~e~e~~a~~ 75 (236)
T cd07651 4 DAGFDVIQTRIKDSLRTLEELRSFYKE-----RASIEEEYAKRLEKLSRKSLGGS---EEGGLKNSLDTLRLETESMAKS 75 (236)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHccccCCC---CcchHHHHHHHHHHHHHHHHHH
Confidence 457778888888777777776432210 0011 22334444444444211 2235889999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHhc
Q 017347 125 RGNLLKALGTQVAEPLRAMVL 145 (373)
Q Consensus 125 ~~~~~~~~~~~fl~PL~~~~~ 145 (373)
+..|...+...+.+||..|..
T Consensus 76 H~~~a~~L~~~v~~~l~~~~~ 96 (236)
T cd07651 76 HLKFAKQIRQDLEEKLAAFAS 96 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986
No 112
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=96.64 E-value=0.59 Score=43.64 Aligned_cols=197 Identities=14% Similarity=0.157 Sum_probs=112.1
Q ss_pred hHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCC-ChHHHHHHHHHHHHHHHHHHH
Q 017347 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSG-NTLSKAALSYGRARAQMEKER 125 (373)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~-s~~g~al~~~g~a~~~l~~~~ 125 (373)
+..+++|..-. ++|++.+.-.+.+ +....+.+.+-|+---.+++ -.+|.+|+.+.+.++.|....
T Consensus 21 nP~lrnlv~~G---~~Y~kal~a~~~a-----------~~~y~dAl~Kige~A~~s~gSkeLG~~L~~m~~~hr~i~~~l 86 (232)
T cd07646 21 NPSLRNFIAMG---KNYEKALASVTFA-----------AKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQL 86 (232)
T ss_pred ChhHHHHHHHh---HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 67788888654 4588777433332 22355666666664332222 368999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHH---HHHH-HHHHHHHHHHHHhhhhccCCCCcc--hHHHHHHHHHH
Q 017347 126 GNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYD---RMRQ-EAEAQAIEVSKRQAKVRETPGNPD--LALKLDAAEVK 199 (373)
Q Consensus 126 ~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~---~~r~-~le~rrld~k~r~~K~~e~~~~~~--~~~eL~~ae~K 199 (373)
+.+...+....|.||..-++- |++-+..--++|+ +.+. .|+.-+-++|+-+.|+. ..+++. .+.+++--+.=
T Consensus 87 e~~lk~Fh~eli~pLE~k~E~-D~k~i~a~~Kky~~e~k~k~~sleK~qseLKKlRrKsq-g~k~~~ky~~ke~q~~~~~ 164 (232)
T cd07646 87 EEMLKSFHNELLTQLEQKVEL-DSRYLTAALKKYQTEHRSKGESLEKCQAELKKLRKKSQ-GSKNPQKYSDKELQYIEAI 164 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCchhhHHHHHHHHHHH
Confidence 999999999999999999986 8888774344473 2222 25666666644433422 112211 11111111100
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347 200 LHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS 260 (373)
Q Consensus 200 ~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s 260 (373)
=....+.-.........+|.+- --.=.+.+..-.++..-...||.+...+|.+=-..|..
T Consensus 165 ~~~q~ele~f~~~~~k~Al~EE-rRRycflvdk~C~~~~~~~~yh~k~~~lL~~kl~~Wqe 224 (232)
T cd07646 165 SNKQGELENYVSDGYKTALTEE-RRRYCFLVEKQCAVAKNSIAYHSKGKELLTQKLPSWQQ 224 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 0111111111111222333221 11112334444556666788999888888776666665
No 113
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=96.60 E-value=0.001 Score=68.09 Aligned_cols=56 Identities=21% Similarity=0.486 Sum_probs=50.1
Q ss_pred ceEEEEeccCCCCCCCCccCCCCCE-EEEEeecCCCeEEEEe--CCeeeEecCCCeeec
Q 017347 306 YFLGEVVHPYQAESDVELTLSVGDY-VVVRKVTNNGWAEGEC--KGKAGWFPFGYIERR 361 (373)
Q Consensus 306 ~~~~~alydf~a~~~~ELsl~~gd~-I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l 361 (373)
...+.++|||.+..+.+|+|..||. ..+++..+..||..+. .|..|++|.|||...
T Consensus 11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~ 69 (468)
T KOG0197|consen 11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN 69 (468)
T ss_pred cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence 3578999999999999999999999 6788888899999876 789999999999875
No 114
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.60 E-value=0.56 Score=44.82 Aligned_cols=90 Identities=16% Similarity=0.147 Sum_probs=56.2
Q ss_pred hHHHHHHHHHhhhhhhHHHHHhhhh-cc-cccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHH
Q 017347 47 HQRLERLYISTRAGKHFQRDIVRGV-EG-YIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE 124 (373)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~-e~-~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~ 124 (373)
|.|++-|+.+++-+....+.|..-. |- -+.-.|-. ...+|+. ...-|.+.| .|..++..+-....+|+..
T Consensus 4 ~~G~~~l~~r~k~g~~~~kel~~flkeRa~IEe~Yak--~L~klak-~~~~~~e~G-----tl~~~w~~~~~~~E~~a~~ 75 (261)
T cd07674 4 NAGFDVLYHNMKHGQISTKELADFVRERAAIEETYSK--SMSKLSK-MASNGSPLG-----TFAPMWEVFRVSSDKLALC 75 (261)
T ss_pred CcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh-cccCCCccc-----hHHHHHHHHHHHHHHHHHH
Confidence 5677778887777666666663322 00 00000100 1123442 222244554 7899999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHhc
Q 017347 125 RGNLLKALGTQVAEPLRAMVL 145 (373)
Q Consensus 125 ~~~~~~~~~~~fl~PL~~~~~ 145 (373)
...|...+. ..+.|+..|.+
T Consensus 76 H~~l~~~L~-~~~~~i~~~~~ 95 (261)
T cd07674 76 HLELMRKLN-DLIKDINRYGD 95 (261)
T ss_pred HHHHHHHHH-HHHHHHHHHHH
Confidence 999999997 56688887765
No 115
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=96.48 E-value=0.001 Score=68.27 Aligned_cols=54 Identities=19% Similarity=0.355 Sum_probs=45.7
Q ss_pred eEEEEeccCCCCCCC-------CccCCCCCEEEEEeecCCCeEEEEeC-----CeeeEecCCCeee
Q 017347 307 FLGEVVHPYQAESDV-------ELTLSVGDYVVVRKVTNNGWAEGECK-----GKAGWFPFGYIER 360 (373)
Q Consensus 307 ~~~~alydf~a~~~~-------ELsl~~gd~I~V~~~~~~gW~~G~~~-----g~~G~fP~~Yve~ 360 (373)
..++|+|||++..+. .|+|..||++.|+++.|..||.+.+. +..|++|+..++.
T Consensus 215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qe 280 (542)
T KOG0609|consen 215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQE 280 (542)
T ss_pred eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHH
Confidence 567899999998755 58999999999999999999999873 5689999976543
No 116
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.45 E-value=0.92 Score=43.63 Aligned_cols=91 Identities=8% Similarity=0.142 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCc--hhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHH
Q 017347 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVE--IGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE 124 (373)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e--~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~ 124 (373)
|.|++-|+.+++.++...+.+..-+- - --.+| .+..|..-+.+++.-. ....|..++..+-....+|+..
T Consensus 11 ~~G~~~L~~r~k~g~~~~kel~~f~k----e-Ra~iEe~Yak~L~kLak~~~~~~---~~Gt~~~~~~~~~~e~e~~a~~ 82 (269)
T cd07673 11 NSGFDVLYHNMKHGQISTKELSDFIR----E-RATIEEAYSRSMTKLAKSASNYS---QLGTFAPVWDVFKTSTEKLANC 82 (269)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHhhhccCC---CcChHHHHHHHHHHHHHHHHHH
Confidence 56777788777776666655533221 0 00011 2233444444443211 2226888999998888999999
Q ss_pred HHHHHHHHhhhhhHHHHHHhcC
Q 017347 125 RGNLLKALGTQVAEPLRAMVLG 146 (373)
Q Consensus 125 ~~~~~~~~~~~fl~PL~~~~~~ 146 (373)
...|...+. ..+.+|..|...
T Consensus 83 H~~la~~L~-~~~~~l~~~~~~ 103 (269)
T cd07673 83 HLELVRKLQ-ELIKEVQKYGEE 103 (269)
T ss_pred HHHHHHHHH-HHHHHHHHHHHH
Confidence 999999998 488999999864
No 117
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.42 E-value=0.88 Score=43.03 Aligned_cols=127 Identities=11% Similarity=0.173 Sum_probs=84.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHH-------HHH
Q 017347 105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEV-------SKR 176 (373)
Q Consensus 105 s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~-------k~r 176 (373)
..+|..|-.|+.+..+.+..-.++.......|+.+|+.|+. +-++. .+-+ .=+..-+|| ..|
T Consensus 103 ~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~---Y~~slk~vlK-------~RdqkQ~d~E~l~E~l~~r 172 (240)
T cd07667 103 GELAEPLEGVSACIGNCSTALEELTEDMTEDFLPVLREYIL---YSESMKNVLK-------KRDQVQAEYEAKLEAVALR 172 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999883 33322 2212 123333444 111
Q ss_pred hhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017347 177 QAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQL 254 (373)
Q Consensus 177 ~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L 254 (373)
..+++.-+.+.+++...+...++++.+.+...+...+.=.-..|..|.+.+.+||+.|..+++.+
T Consensus 173 -------------re~~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~~K~~e~k~~l~~~Ad~~i~fy~~~~~~We~~ 237 (240)
T cd07667 173 -------------KEERPKVPTDVEKCQDRVECFNADLKADMERWQNNKRQDFRQLLMGMADKNIQYYEKCLTAWESI 237 (240)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12455555666666666555555566666443322211114589999999999999999988765
No 118
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=96.38 E-value=0.9 Score=42.78 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHH
Q 017347 106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEV 173 (373)
Q Consensus 106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~ 173 (373)
.+..++..+=.....++..+..+...+.+.++.||..+.. +++..+ .....+.++.+.+...--++
T Consensus 62 s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~--~~~~~rK~~~~~~~kl~~~~~~~~~~l 128 (251)
T cd07653 62 SSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLIS--ELRQERKKHLSEGSKLQQKLESSIKQL 128 (251)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888999999999999999999999999986 444444 44444445444444444444
No 119
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=96.38 E-value=0.5 Score=44.63 Aligned_cols=94 Identities=21% Similarity=0.189 Sum_probs=64.9
Q ss_pred hHHHHHHHHHhhhhhhHHHHHhhhhcc--cccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHH
Q 017347 47 HQRLERLYISTRAGKHFQRDIVRGVEG--YIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE 124 (373)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~--~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~ 124 (373)
+.+++.|+.+++-+..+.+.|+.-..- -+...|-. ...+|+.-..+.+. -+ + ..|..++..+......++..
T Consensus 4 ~~g~~~l~~~~~~G~~~ckel~~f~kERa~IE~~YAK--~L~kLa~k~~k~~~-~~--~-Gtl~~aw~~~~~e~e~~a~~ 77 (239)
T cd07658 4 QKGFEELRRYVKQGGDFCKELATVLQERAELELNYAK--GLSKLSGKLSKASK-SV--S-GTLSSAWTCVAEEMESEADI 77 (239)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhc-cC--C-CcHHHHHHHHHHHHHHHHHH
Confidence 457788999998888888888654420 00001100 11134443333331 22 4 37999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHhcC
Q 017347 125 RGNLLKALGTQVAEPLRAMVLG 146 (373)
Q Consensus 125 ~~~~~~~~~~~fl~PL~~~~~~ 146 (373)
+..+...+...+..||+.|+..
T Consensus 78 H~~la~~L~~ev~~~l~~~~~~ 99 (239)
T cd07658 78 HRNLGSALTEEAIKPLRQVLDE 99 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999974
No 120
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=96.36 E-value=0.64 Score=42.47 Aligned_cols=166 Identities=13% Similarity=0.142 Sum_probs=105.3
Q ss_pred CCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHH
Q 017347 80 KQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRY 159 (373)
Q Consensus 80 ~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y 159 (373)
-|.|+ -||+.+...|.... +- =|+-....|.+...-++.+.....- -..|..-+..|... -++|..+=.++|
T Consensus 36 sq~e~--~LG~fl~e~~~~d~--t~--ag~~m~~t~KaL~~sg~qrl~~r~p-l~~f~~~v~Tf~~r-ai~Dtl~Ti~~~ 107 (204)
T cd07661 36 SQEEN--VLGKFLKEQGKIDK--TT--AGKMMAATGKALSFSSQQRLALRVP-LLRLYQEVETFRER-AIADTLQTIQRM 107 (204)
T ss_pred HHHHH--HHHHHHHHHhccCh--hh--hccHHHHHHHHHHHhHHHHHHHHhh-HHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 34666 69999999998765 21 1556666666666655555544111 22556666667665 666666556678
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-ccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 017347 160 DRMRQEAEAQAIEVSKRQAKV-RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVE 238 (373)
Q Consensus 160 ~~~r~~le~rrld~k~r~~K~-~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~ve 238 (373)
+..|-+.++-|++++.-.... ++.. -.-.+++.++..+...|+.++.|...+..-+--.++..=.+.-..|..|-.
T Consensus 108 E~aR~EY~a~~~~mk~~s~eldP~~~---~~l~kfr~aQ~qvr~~K~kfdkLk~Dv~qKvdlL~asR~n~ls~~L~~yqn 184 (204)
T cd07661 108 EKCRTEYRAALLWMKSVSQELDPDTY---KQLEKFRKAQAQVRSAKERFDKLKMDVCQKVDLLGASRCNLLSHALVTYQN 184 (204)
T ss_pred HHhhcccHHHHHHHHHHhhhcCCccc---hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998884432211 1111 112356767776777777766666667655533333332334458888999
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 017347 239 AERTYHQRVLQILDQLEG 256 (373)
Q Consensus 239 Aql~Yh~q~~~iL~~L~~ 256 (373)
+.+.|.......|..+..
T Consensus 185 al~~y~~kt~~~~~~i~~ 202 (204)
T cd07661 185 TLLQFWEKTSRTMATIHE 202 (204)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999988887765
No 121
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=96.35 E-value=0.9 Score=42.41 Aligned_cols=94 Identities=16% Similarity=0.172 Sum_probs=62.4
Q ss_pred CCccccchH-Hhh-hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHH
Q 017347 34 SDNVVTDEA-ELH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAA 111 (373)
Q Consensus 34 ~~~~~~~e~-e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al 111 (373)
+|++..+|. .+. .|.+|=+++..++..-.--|.+. . ..-.+|.++..-|+- .++.++++|
T Consensus 22 ~D~~Fe~~k~~l~~l~~~Lk~~~~~~~~lv~~rkela------~--------~~~~fs~al~~L~~~----E~t~L~~~l 83 (219)
T cd07621 22 VDEFFEQEKNFLVEYHNRIKDATAKADKMTRKHKDVA------D--------SYIKISAALTQLATS----EPTPLDKFL 83 (219)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H--------HHHHHHHHHHHhhcc----ccchHHHHH
Confidence 556665554 222 56666666666655322222221 0 111455555555542 336899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhc
Q 017347 112 LSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL 145 (373)
Q Consensus 112 ~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~ 145 (373)
.++|+...+|.+........---.|-++|+.|+.
T Consensus 84 s~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r 117 (219)
T cd07621 84 LKVAETFEKLRKLEGRVASDEDLKLSDTLRYYMR 117 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence 9999999999999998888888899999999886
No 122
>KOG3775 consensus Mitogen-activated protein kinase scaffold protein JIP [Signal transduction mechanisms]
Probab=96.28 E-value=0.0022 Score=63.13 Aligned_cols=56 Identities=30% Similarity=0.445 Sum_probs=50.8
Q ss_pred eEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeeecc
Q 017347 307 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRD 362 (373)
Q Consensus 307 ~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~l~ 362 (373)
..=++++.|.+..++||-|..||.|.|-...++-|++|.+ .|+.|+||+.|+-.++
T Consensus 263 ~THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd 320 (482)
T KOG3775|consen 263 QTHRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVD 320 (482)
T ss_pred hhhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecC
Confidence 3458899999999999999999999999988999999987 9999999999987764
No 123
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=96.25 E-value=0.99 Score=41.91 Aligned_cols=195 Identities=12% Similarity=0.159 Sum_probs=112.2
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCC-CCCChHHHHHHHHHHHHHHHHHH
Q 017347 46 QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTC-TSGNTLSKAALSYGRARAQMEKE 124 (373)
Q Consensus 46 ~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~-~~~s~~g~al~~~g~a~~~l~~~ 124 (373)
-+.+|.+|..- .|+|.|.+--.+.+ ++.-.+++.+-|+---. ++.-.+|.+|+.+.++++++...
T Consensus 18 fnP~lrnLv~l---Gk~Y~KA~~a~~~A-----------~~~y~dal~Kige~A~~s~~SkeLG~~L~qi~ev~r~i~~~ 83 (226)
T cd07645 18 FNPGLRNLINL---GKNYEKAVNAMVLA-----------GKAYYDGVAKIGEIAAVSPVSKELGHVLMEISDVHKKLNDS 83 (226)
T ss_pred cCHHHHHHHHH---hhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 46788888865 45688776333332 22345555555553221 13346999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHH---HHH-HHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHH
Q 017347 125 RGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDR---MRQ-EAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKL 200 (373)
Q Consensus 125 ~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~---~r~-~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~ 200 (373)
.+.....+..-+|.||..-++- |++-+..--++|+. .+. .||...-|+|+-+.|+. ..+++. +-..=|.++
T Consensus 84 le~~lK~Fh~Ell~~LE~k~el-D~kyi~a~~Kkyq~E~k~k~dsLeK~~seLKK~RRKsq-g~kn~~---kye~Ke~~~ 158 (226)
T cd07645 84 LEENFKKFHREIIAELERKTDL-DVKYMTATLKRYQTEHKNKLDSLEKSQADLKKIRRKSQ-GRRNAS---KYEHKENEY 158 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCch---hhHHHHHHH
Confidence 9999999999999999999986 88888833344742 222 36777778855444432 122331 111111111
Q ss_pred HHHHH----HH-HHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347 201 HDLKS----NM-AILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS 260 (373)
Q Consensus 201 ~e~~e----~~-~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s 260 (373)
-+..+ .| .........+|+.- --.=.+.+..-.+|......||.+...+|.+=-..|..
T Consensus 159 ~e~~~~~q~el~~f~~~~~k~AL~EE-rRRycFlvdkhC~~~~~~~~yh~k~~~lL~~klp~Wqe 222 (226)
T cd07645 159 LETVTSRQSDIQKFIADGCREALLEE-KRRFCFLVDKHCSFSNHIHYFHQQAAELLNSKLPVWQE 222 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH
Confidence 11111 11 11111222333221 11112334455566667778888888888765555543
No 124
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.20 E-value=1.1 Score=42.13 Aligned_cols=92 Identities=21% Similarity=0.177 Sum_probs=60.7
Q ss_pred hHHHHHHHHHhhhhhhHHHHHhhhh-cc-cccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHH
Q 017347 47 HQRLERLYISTRAGKHFQRDIVRGV-EG-YIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE 124 (373)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~-e~-~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~ 124 (373)
+.||+-|+.++.-++...+.|.... |- -+.-.|-. ...+|+. ...-|.|.| .|..++..+-.....|+..
T Consensus 4 ~~Gf~vl~~~~k~g~~~~~el~~fl~ERa~IEe~Yak--~L~klak-~~~~~~e~G-----tl~~sw~~~~~e~E~~a~~ 75 (233)
T cd07649 4 VTGFEILLQKQLKGKQMQKEMAEFIRERIKIEEEYAK--NLSKLSQ-SSLAAQEEG-----TLGEAWAQVKKSLADEAEV 75 (233)
T ss_pred CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh-hhcCCCCCC-----hHHHHHHHHHHHHHHHHHH
Confidence 4567777777776666666664332 10 00000100 1113443 222344555 7999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHhcC
Q 017347 125 RGNLLKALGTQVAEPLRAMVLG 146 (373)
Q Consensus 125 ~~~~~~~~~~~fl~PL~~~~~~ 146 (373)
...|...+...+..||+.|..+
T Consensus 76 H~~la~~L~~ev~~~l~~f~~~ 97 (233)
T cd07649 76 HLKFSSKLQSEVEKPLLNFREN 97 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999975
No 125
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.18 E-value=1.2 Score=42.31 Aligned_cols=193 Identities=10% Similarity=0.128 Sum_probs=98.2
Q ss_pred hHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCc--hhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHH
Q 017347 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVE--IGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE 124 (373)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e--~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~ 124 (373)
|.||+-|+.+++-+..+.+.|..-.- - --.+| .+..|..-..++..-. ....|..++..+=....+|+..
T Consensus 4 ~~G~~~L~~r~k~g~~~~~el~~f~k----e-Ra~IEe~Yak~L~kLakk~~~~~---~~gt~~~~w~~i~~~~e~~a~~ 75 (261)
T cd07648 4 NNGFDVLYHNMKHGQIAVKELADFLR----E-RATIEETYSKALNKLAKQASNSS---QLGTFAPLWLVLRVSTEKLSEL 75 (261)
T ss_pred CcChHHHHHHHHhHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHhcCCC---CcCcHHHHHHHHHHHHHHHHHH
Confidence 56778888888877776666643321 0 00011 1222333333332211 2236888888888889999999
Q ss_pred HHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHH----------HHHHHHHHHHHHHH-HH--HhhhhccCCCC----
Q 017347 125 RGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRY----------DRMRQEAEAQAIEV-SK--RQAKVRETPGN---- 186 (373)
Q Consensus 125 ~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y----------~~~r~~le~rrld~-k~--r~~K~~e~~~~---- 186 (373)
...|...+. .++.||..+++ .++.-+ ..+... ....+.++.-+-.| .. ...+.+.....
T Consensus 76 H~~l~~~L~-~~~~~l~~~~~--~~~k~rK~~k~~~~~~~k~~~~~~~~~~~l~KaK~~Y~~~c~e~e~~~~~~~s~k~~ 152 (261)
T cd07648 76 HLQLVQKLQ-ELIKDVQKYGE--EQHKKHKKVKEEESGTAEAVQAIQTTTAALQKAKEAYHARCLELERLRRENASPKEI 152 (261)
T ss_pred HHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHH
Confidence 999999995 68899998875 333322 221111 01111122222222 00 00001111000
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 187 PDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQI 250 (373)
Q Consensus 187 ~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~i 250 (373)
..+..++..|...|...-+.+......-...|..+-..-|.+--.+|..|-+....|+.....+
T Consensus 153 eK~~~K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~~~~~~ 216 (261)
T cd07648 153 EKAEAKLKKAQDEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASYAEVLSEN 216 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0122344455555555555566666666677765544444444446666666666666655443
No 126
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=96.18 E-value=0.34 Score=50.75 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 017347 230 LQRLIAMVEAERTYHQRVLQI 250 (373)
Q Consensus 230 l~~L~~~veAql~Yh~q~~~i 250 (373)
+.-|.+|+.....|+....++
T Consensus 196 VEpllafl~slf~f~h~g~el 216 (812)
T KOG1451|consen 196 VEPLLAFLYSLFSFFHVGSEL 216 (812)
T ss_pred HHHHHHHHHHHHHHhhhhHHH
Confidence 555666666666655544443
No 127
>KOG3601 consensus Adaptor protein GRB2, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=96.05 E-value=0.00097 Score=60.95 Aligned_cols=52 Identities=21% Similarity=0.364 Sum_probs=46.5
Q ss_pred EEEeccCCCCCCCCccCCCCCEEEEEeec-CCCeEEEEeCCeeeEecCCCeee
Q 017347 309 GEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECKGKAGWFPFGYIER 360 (373)
Q Consensus 309 ~~alydf~a~~~~ELsl~~gd~I~V~~~~-~~gW~~G~~~g~~G~fP~~Yve~ 360 (373)
+.++|+|.+...+||+|.+|+.|.+++.. +-+|...+..|..|++|.||.+.
T Consensus 3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~~ 55 (222)
T KOG3601|consen 3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIRM 55 (222)
T ss_pred hhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCccccccc
Confidence 56789999999999999999999988875 45799999999999999999854
No 128
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=95.96 E-value=0.11 Score=48.85 Aligned_cols=137 Identities=14% Similarity=0.144 Sum_probs=91.8
Q ss_pred HHHHHHhcCCCC-CCCCccccchHHhh-hhHHHHHHHHHhhhhhhHHH---------HHhhh-----hcccccC---CCC
Q 017347 20 QAVFKQFGGGGY-GGSDNVVTDEAELH-QHQRLERLYISTRAGKHFQR---------DIVRG-----VEGYIVT---GSK 80 (373)
Q Consensus 20 q~~~~~~~~~~~-~~~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~~~~---------~i~r~-----~e~~~~~---~~~ 80 (373)
|.+-.++||+.- .-+|+|...|.+|. +|...|+|+.+|.. |.. .+.+. -+.+..+ |..
T Consensus 1 Q~~~Ek~G~aEkTe~d~df~~le~~~d~~~~~~e~i~~~~~~---~lqpNp~~r~~~~~~~k~~~~~~~~~~~~e~Lg~~ 77 (229)
T cd07594 1 QFTEEKLGTAEKTEYDAHFENLLQRADKTKVWTEKILKQTEA---VLQPNPNVRVEDFIYEKLDRKKPDRLSNLEQLGQA 77 (229)
T ss_pred CcchhhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCChhhhHHHHHHHHhhcccCCCCCcHHHHHHH
Confidence 456778997742 23899999999999 99999999999876 432 33222 2343322 233
Q ss_pred CCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHH
Q 017347 81 QVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEK-ERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRY 159 (373)
Q Consensus 81 ~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~-~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y 159 (373)
.++.|+-||.+ ..||.-+- .||.|..++|+++..... +..+|+.-+..-.-.-|+.... .-|....++-.|
T Consensus 78 M~~~g~~lg~~-S~~g~aL~-----~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k--~RKkLe~rRLd~ 149 (229)
T cd07594 78 MIEAGNDFGPG-TAYGSALI-----KVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISK--ERKLLENKRLDL 149 (229)
T ss_pred HHHHHhhCCCC-CchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 45555555554 34555554 678999999999988765 7999998887655446665543 344444566678
Q ss_pred HHHHHHHH
Q 017347 160 DRMRQEAE 167 (373)
Q Consensus 160 ~~~r~~le 167 (373)
|..|..+.
T Consensus 150 D~~k~r~~ 157 (229)
T cd07594 150 DACKTRVK 157 (229)
T ss_pred HHHHHHHh
Confidence 88777775
No 129
>KOG3632 consensus Peripheral benzodiazepine receptor PRAX-1 [Signal transduction mechanisms; Cytoskeleton]
Probab=95.84 E-value=0.014 Score=63.68 Aligned_cols=56 Identities=25% Similarity=0.443 Sum_probs=47.4
Q ss_pred eEEEEeccCCC------CCCCCccCCCCCEEEEEeec-CCCeEEEEe-CCeeeEecCCCeeecc
Q 017347 307 FLGEVVHPYQA------ESDVELTLSVGDYVVVRKVT-NNGWAEGEC-KGKAGWFPFGYIERRD 362 (373)
Q Consensus 307 ~~~~alydf~a------~~~~ELsl~~gd~I~V~~~~-~~gW~~G~~-~g~~G~fP~~Yve~l~ 362 (373)
..|.+.|+|.+ ..+.||.+.+|++|.|.... .+|+++|++ .|+.|++|+|||+.+.
T Consensus 448 q~~~arySynPFegpNenpeaelpltAg~yiYiyGdmdEdgfyegeL~dgrrglvPsnFVe~v~ 511 (1335)
T KOG3632|consen 448 QPFTARYSYNPFEGPNENPEAELPLTAGYYIYIYGDMDEDGFYEGELRDGRRGLVPSNFVEVVT 511 (1335)
T ss_pred ceEEEEEeccCCcCCCCCCccccccccceEEEEecCCCccccceeeeecccccCCCchheEEec
Confidence 45788888776 24578999999999998875 568999999 9999999999999874
No 130
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=95.77 E-value=1.8 Score=40.87 Aligned_cols=49 Identities=18% Similarity=0.172 Sum_probs=39.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH
Q 017347 103 SGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR 153 (373)
Q Consensus 103 ~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~ 153 (373)
++|+...+...+=.--..++..+..+..++..++++||..++. +++.++
T Consensus 59 ~~s~~~~sW~~iL~ete~~A~~~~~~ae~l~~~i~~~l~~l~~--~~~~~r 107 (237)
T cd07657 59 QGSPISKSWKEIMDSTDQLSKLIKQHAEALESGTLDKLTLLIK--DKRKAK 107 (237)
T ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--HHHHHH
Confidence 4556666777777777888899999999999999999998885 555554
No 131
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=95.72 E-value=2 Score=40.99 Aligned_cols=39 Identities=15% Similarity=0.084 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh
Q 017347 106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMV 144 (373)
Q Consensus 106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~ 144 (373)
.+..++..+=.....++..+..+...+...+..||..+.
T Consensus 61 sl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~~~i~~~~ 99 (258)
T cd07655 61 TLETAWKGLLSEAERLSELHLSIRDKLLNDVVEEVKTWQ 99 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888899999999999999999999999886
No 132
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.68 E-value=0.088 Score=59.98 Aligned_cols=60 Identities=27% Similarity=0.415 Sum_probs=54.7
Q ss_pred CceEEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeeccCC
Q 017347 305 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV 364 (373)
Q Consensus 305 ~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l~~~ 364 (373)
+.-++.++|+|...++-+.+.++||++++.....-+||..+++..-|++|+.||+.+.|-
T Consensus 967 g~~~v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen 967 GKECVLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred HHHHHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhccC
Confidence 345678899999999999999999999999888999999999999999999999998765
No 133
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=95.63 E-value=2.2 Score=40.75 Aligned_cols=198 Identities=12% Similarity=0.088 Sum_probs=94.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCC---CCC-CChHHHHHHHHHHHHHHHHH
Q 017347 48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT---CTS-GNTLSKAALSYGRARAQMEK 123 (373)
Q Consensus 48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~---~~~-~s~~g~al~~~g~a~~~l~~ 123 (373)
.+|+.|..-+..+..|.++|.+-.- ....--.|.+.+|-.-+-+|+.==. ..| .|+ ..++..+=.....++.
T Consensus 5 Dqf~~~~k~~~~Gi~~l~~~~~F~k---eRa~IE~eYakkL~~L~Kky~~KK~~~~e~p~~t~-~~s~~~~L~~~~~~a~ 80 (252)
T cd07675 5 DQFDNLDKHTQWGIDFLERYAKFVK---ERLEIEQNYAKQLRNLVKKYCPKRSSKDEEPRFTS-CLSFYNILNELNDYAG 80 (252)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccccCCCCCCccccH-HHHHHHHHHHHHHHHH
Confidence 3455555555555555555532210 0000112334455555555533111 111 222 2334444455777888
Q ss_pred HHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q 017347 124 ERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHD 202 (373)
Q Consensus 124 ~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e 202 (373)
.++.+...+..+++.||..+.. +|+..| ..-....++-+.+++.--++.+-+.+.- .+|.+.+.|..+++.
T Consensus 81 q~e~~a~~l~~~v~~~l~~~~~--~l~~~rk~~~~~~~klqk~l~~~~~~leksKk~Y~------~acke~E~A~~k~~k 152 (252)
T cd07675 81 QREVVAEEMGHRVYGELMRYSH--DLKGERKMHLQEGRKAQQYLDMCWKQMDNSKKKFE------RECREAEKAQQSYER 152 (252)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHh
Confidence 9999999999999999999985 788766 2212223344444433333322111211 124455555544443
Q ss_pred HHHH-------HHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHH
Q 017347 203 LKSN-------MAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERT-YHQRVLQILDQLEGEM 258 (373)
Q Consensus 203 ~~e~-------~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~-Yh~q~~~iL~~L~~eL 258 (373)
+..+ ..++..-+.......+ +...-++..|..+..-+.. ||.-.-++++.|+..=
T Consensus 153 a~~d~~~tk~~~eK~k~~~~~~~q~~e-~aKn~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~le 215 (252)
T cd07675 153 LDNDTNATKSDVEKAKQQLNLRTHMAD-ESKNEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEMD 215 (252)
T ss_pred cccCcccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 2211 1111111111111111 0111125566666666666 7777777777777743
No 134
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=94.93 E-value=0.45 Score=44.55 Aligned_cols=122 Identities=15% Similarity=0.278 Sum_probs=80.5
Q ss_pred CCccccchHHhh-hhHHHHHHHHHhhhhhhHHH-------------HHhh---h--hcccccC----CCCCCchhhHHHH
Q 017347 34 SDNVVTDEAELH-QHQRLERLYISTRAGKHFQR-------------DIVR---G--VEGYIVT----GSKQVEIGTKLSE 90 (373)
Q Consensus 34 ~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~~~~-------------~i~r---~--~e~~~~~----~~~~~e~~~~Lg~ 90 (373)
+|+|...|.+|. +|..+|+|+.+|.. |.. +|.| . ..++..+ |...++.|+-||.
T Consensus 6 d~~f~~le~~~d~t~~~~~~l~~~t~~---~LqpNP~~r~~~~~~~~~~k~~g~~k~~~~p~~~~~Lg~~M~~~G~~lg~ 82 (223)
T cd07615 6 DDDFQEMERKIDVTNKVVAELLSKTTE---YLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEGLLGDCMLRYGRELGE 82 (223)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCchhhHHHHHHHHHHHHhcccccCCCCCchhHHHHHHHHHHhhCCC
Confidence 788999999999 99999999999887 544 3332 2 2233332 2344666555555
Q ss_pred HHHHhhccCCCCCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 017347 91 DSRKYGSDNTCTSGNTLSKAALSYGRARAQMEK-ERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (373)
Q Consensus 91 ~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~-~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~l 166 (373)
+.. ||.-+. .||.|..++|+++..... +..+|+.-+..-...-|+.... .-|-...++-.||..++.+
T Consensus 83 dS~-~G~aL~-----~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~dik~i~k--~RKkLe~rRLd~D~~K~r~ 151 (223)
T cd07615 83 EST-FGNALL-----DVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKDLKEIGH--HLKKLEGRRLDFDYKKKRQ 151 (223)
T ss_pred CCh-HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcC
Confidence 332 454444 578999999999887655 8899998888655566665442 3333335555677766555
No 135
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=94.83 E-value=3.2 Score=38.21 Aligned_cols=188 Identities=13% Similarity=0.122 Sum_probs=102.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCC-hHHHHHHHHHHHHHHHHHHHH
Q 017347 48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGN-TLSKAALSYGRARAQMEKERG 126 (373)
Q Consensus 48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s-~~g~al~~~g~a~~~l~~~~~ 126 (373)
.+|+||..- +|+|-|.+--.+. .++.-.+.+.+-|+---.++.| .+|.+|+.+++++++|-..-+
T Consensus 20 P~lrnlv~l---Gk~Y~kA~~a~t~-----------aa~~Yf~Al~KiGe~A~~s~~s~~LG~vLmqisev~r~i~~~le 85 (215)
T cd07644 20 PALENLVYL---GNNYLRAFHALSE-----------AAEVYFSAIAKIGEQALQSLTSQSLGEILIQMSETQRKLSADLE 85 (215)
T ss_pred hHHHHHHHH---hHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 455566543 4446665533322 2334556666767644333455 599999999999999999888
Q ss_pred HHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHH---HHHHH-HHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHH
Q 017347 127 NLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYD---RMRQE-AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHD 202 (373)
Q Consensus 127 ~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~---~~r~~-le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e 202 (373)
.....+-.-.|.||..-++- |.+=+..--|+|+ |.|.. ||.---++++.+.|.. +++. + ...--+.+
T Consensus 86 ~~lk~FH~ell~~LEkk~el-D~kyi~~s~KkYq~E~r~k~dsleK~~selkk~rrk~q---kn~~-e--~kE~~~~l-- 156 (215)
T cd07644 86 VVFQTFHVDLLQHMDKNTKL-DMQFIEDSRRVYELEYRHRAANLEKCMSELWRMERQRD---RNVR-E--MKENVNRL-- 156 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhc---CCch-h--hHHHHHHH--
Confidence 88888889999999988886 8777773334473 22222 3443344433222211 2221 1 11000001
Q ss_pred HHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 017347 203 LKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEML 259 (373)
Q Consensus 203 ~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~ 259 (373)
..+.-..+......+|+.-. -+=.|.+....++..--..||.+...+|.+--..|.
T Consensus 157 q~~~~~f~~~~~k~Al~eEr-RRy~Flvek~c~~~k~~~~yh~ka~~ll~~kl~~Wq 212 (215)
T cd07644 157 RQSMQAFLKESQRAAELEEK-RRYRFLAEKHYLLNNTFLQFQSRARGMLQTRVPSWK 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhc
Confidence 01111111222233332211 111334555566666778889888888776555554
No 136
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=94.52 E-value=1.1 Score=42.04 Aligned_cols=100 Identities=13% Similarity=0.204 Sum_probs=65.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHh-hcc----CCCCCCChHHHHHHH---------
Q 017347 48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKY-GSD----NTCTSGNTLSKAALS--------- 113 (373)
Q Consensus 48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~-g~e----~~~~~~s~~g~al~~--------- 113 (373)
.+|+.|-..+++++.|+++|.+.++.+++| +|..-.=..+...|-+- |.. .+ .+...+|.++++
T Consensus 7 ~df~~le~~~d~~~~~~~~l~~~~~~~lqp-NP~~r~~~~~~~~~~K~~g~~~~~~~p-~~~~~Lg~~M~~~g~elg~~S 84 (223)
T cd07592 7 DEFLEMERKTDATSKLVEDLIPKTKEYLQP-NPAARAKLAMQNTYSKIRGQAKSTKYP-QPEGLLGEVMLKYGRELGEDS 84 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CchHhHHHHHHHHHHHHhccCcccCCC-CcccHHHHHHHHHHhhcCCCC
Confidence 478899999999999999999999999997 77754311222333333 332 22 123578999887
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchH
Q 017347 114 -YGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDD 151 (373)
Q Consensus 114 -~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~ 151 (373)
||.|...++.+...+...-...-..--..|+. ||..
T Consensus 85 ~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~--pL~~ 121 (223)
T cd07592 85 NFGQALVEVGEALKQLAEVKDSLDDNVKQNFLD--PLQQ 121 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 56677888888777665444443344445664 5544
No 137
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=94.30 E-value=4.3 Score=37.36 Aligned_cols=146 Identities=10% Similarity=0.078 Sum_probs=84.6
Q ss_pred HHHHHHHHhhccCC---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcC-CCchHHHHHHHHHHHH
Q 017347 87 KLSEDSRKYGSDNT---CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG-APLDDARHLAQRYDRM 162 (373)
Q Consensus 87 ~Lg~~m~~~g~e~~---~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~-~~lk~~~~~k~~y~~~ 162 (373)
++|..+...|.-|. .+..+.+.+||...|+++..|+++..+....=-..|.+-|..|+-- +-+++|-+
T Consensus 44 k~G~af~~L~~af~~d~~~~~t~Ls~Al~~~g~~~e~Ig~l~~eQa~~D~~~l~E~L~eY~gll~~~pdi~~-------- 115 (199)
T cd07626 44 KIGQAFTSLGTAFELDETPTSVPLTQAIKHTGQAYEEIGELFAEQPKHDLIPLLDGLHEYKGLLSTFPDIIG-------- 115 (199)
T ss_pred HHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHhHHHhhhHHHH--------
Confidence 57777777775444 1244679999999999999999999988887777777777766520 02344431
Q ss_pred HHHHHHHHHHH-HHHhh-hhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 017347 163 RQEAEAQAIEV-SKRQA-KVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAE 240 (373)
Q Consensus 163 r~~le~rrld~-k~r~~-K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAq 240 (373)
.++-.+ |+|-. |..+.++. ...+++..+.+++..... ....|.-.+.+.-.=+-..+..|++.|
T Consensus 116 -----~~k~al~K~kE~~r~~~egk~--~~~e~~ev~~r~d~IS~~-------~~aE~~~F~~eRv~Dfk~~m~~yLe~q 181 (199)
T cd07626 116 -----VHKGAVQKVKECERLVDEGKM--SSAELEEVKRRTDVISYA-------LLAEINHFHRERVRDFKSMMRNYLQQQ 181 (199)
T ss_pred -----HHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112 11111 11111111 012444455556555444 555554444333111133677888899
Q ss_pred HHHHHHHHHHHHHh
Q 017347 241 RTYHQRVLQILDQL 254 (373)
Q Consensus 241 l~Yh~q~~~iL~~L 254 (373)
..||++...-|.+.
T Consensus 182 I~fyqqI~~kl~~a 195 (199)
T cd07626 182 IEFYQKIAAKLEEA 195 (199)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998887766654
No 138
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=94.12 E-value=5.4 Score=37.79 Aligned_cols=193 Identities=16% Similarity=0.159 Sum_probs=107.5
Q ss_pred hHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCC--------CCCChHHHHHHHHHHHH
Q 017347 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTC--------TSGNTLSKAALSYGRAR 118 (373)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~--------~~~s~~g~al~~~g~a~ 118 (373)
...+-+|+.+......-...++++.++.-. +.+ .+|..+...|+.-+. ..-..+.++|..+|.-.
T Consensus 28 r~~I~~l~~~~~~l~~l~er~~kR~~~~A~------d~~-~f~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~s~~~ 100 (246)
T cd07597 28 RERIRRLLESWTKLRVLAERYEKRSQQQAA------DRA-EFARLLNSLGELTARLYPWAGDSDTWGDINEGLSSLSKHF 100 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH-HHHHHHHhhccCCCCCCCccCCCccHHHHHHHHHHHHHHH
Confidence 445555555555555555666666665321 111 456666666654431 11135688999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhhccC-CCCcch
Q 017347 119 AQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYD--------RMRQEAEAQAIEVSKRQAKVRET-PGNPDL 189 (373)
Q Consensus 119 ~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~--------~~r~~le~rrld~k~r~~K~~e~-~~~~~~ 189 (373)
..+...-.+......+.|++||+.|++ =+--.+.+-.||+ ++.+.++.. ++|..+.+-. ...+
T Consensus 101 ~~~s~~~~~~a~~~~~~vlE~Lk~~~d--~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~----~~kl~~l~~~~~~~~-- 172 (246)
T cd07597 101 QLLSDLSEDEARAEEDGVLEKLKLQLD--LLVSLRDLFERHEKLSLNNIQRLLKRIELN----KKKLESLRAKPDVKG-- 172 (246)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHH--HHHHHHHHHHHHHhcccccHHHHHHHHHHH----HHHHHHhhcCCCCch--
Confidence 999999999999999999999999984 2222334433333 223322221 2221111111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhHHHH--HHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 017347 190 ALKLDAAEVKLHDLKSNMAI-LGKEAA--AAMA----AVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG 256 (373)
Q Consensus 190 ~~eL~~ae~K~~e~~e~~~~-L~kea~--~~m~----~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~ 256 (373)
.++...++.....++.... +++... .-|. -+...++ +....|..|+..+..||.....++..|..
T Consensus 173 -~e~ekl~~~i~~d~~~i~~q~~R~~fi~~Cv~~E~~~fq~~~~-~~~~~l~~~~~~q~~~~~~l~~~W~~L~~ 244 (246)
T cd07597 173 -AEVDKLEASIIKDKESIANQLNRSWFIRECILEETQLFQETQF-LLTSILQEFVKDEIQYHSELANVWERLVP 244 (246)
T ss_pred -hHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2344444445444444222 122111 1111 1333332 45779999999999999999888887764
No 139
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=94.10 E-value=5.6 Score=37.92 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH
Q 017347 116 RARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR 153 (373)
Q Consensus 116 ~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~ 153 (373)
.....++..++.+...+...+++||..++. +++..+
T Consensus 74 ~e~~~~A~~H~~~~~~L~~~v~~~l~~~~~--~~k~~r 109 (253)
T cd07676 74 NEMNDYAGQHEVISENLASQIIVELTRYVQ--ELKQER 109 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 334488999999999999999999998885 455544
No 140
>smart00721 BAR BAR domain.
Probab=94.06 E-value=4.8 Score=37.03 Aligned_cols=94 Identities=11% Similarity=0.142 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 017347 106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPG 185 (373)
Q Consensus 106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~ 185 (373)
.+|.++..++++...+...+..++..+...+..-+..... -.+.-.++.-.||+.|.++++-+ ++..+..+. +
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~kk~~~~~lDyD~~~~kl~~~~----~~~~~~~~~-k 171 (239)
T smart00721 99 KLGEALKKLLQVEESLSQVKRTFILPLLNFLLGEFKEIKK--ARKKLERKLLDYDSARHKLKKAK----KSKEKKKDE-K 171 (239)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHhHHHHH--HHHHHHhHHHHHHHHHHHHHHHH----HhccCChhh-h
Confidence 4667777788888777777888887777666555554442 11111145556677666665321 111111111 4
Q ss_pred CcchHHHHHHHHHHHHHHHHH
Q 017347 186 NPDLALKLDAAEVKLHDLKSN 206 (373)
Q Consensus 186 ~~~~~~eL~~ae~K~~e~~e~ 206 (373)
.+.++.+++.|+.+|+++.+.
T Consensus 172 l~~~e~el~~ak~~fe~~~~~ 192 (239)
T smart00721 172 LAKAEEELRKAKQEFEESNAQ 192 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 556688999999999997655
No 141
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=93.85 E-value=5.4 Score=37.17 Aligned_cols=169 Identities=21% Similarity=0.244 Sum_probs=97.1
Q ss_pred HHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCC-CCCCChHHHHHHH----------HHHH
Q 017347 49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT-CTSGNTLSKAALS----------YGRA 117 (373)
Q Consensus 49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~-~~~~s~~g~al~~----------~g~a 117 (373)
.|..|-..++.++....+|.+.++.|+..-.+..+ -|.+-. ..|...+|.+++. ||.|
T Consensus 8 df~~le~~~d~~~~~~~~l~~~~~~y~~~l~k~~~-----------~g~~k~k~~p~~~Lg~~M~~~g~~lg~dS~~G~a 76 (215)
T cd07593 8 EFLELEKEIELRKEGMERLHRSTEAYVEYLSKKKP-----------LLDDKDKCLPVEALGLVMINHGEEFPQDSEYGSC 76 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-----------cccccccCChHHHHHHHHHHHHhhCCCCChHHHH
Confidence 45566777788888999999999998752112211 012111 1244467887764 7788
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHH-HHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHH
Q 017347 118 RAQMEKERGNLLKALGTQVAEPLR-AMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAA 196 (373)
Q Consensus 118 ~~~l~~~~~~~~~~~~~~fl~PL~-~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~a 196 (373)
...+|.+...+.. +...|+.++. +|+. +|.... .. -+++...| .|.. .....+-.+
T Consensus 77 L~~~G~a~~kia~-~q~~f~~~~~~~~l~--pL~~~l--~~-----~k~i~k~R-------KkLe------~rRLdyD~~ 133 (215)
T cd07593 77 LSKLGRAHCKIGT-LQEEFADRLSDTFLA--NIERSL--AE-----MKEYHSAR-------KKLE------SRRLAYDAA 133 (215)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHH--HHHHHH--HH-----HHHHHHHH-------HHHH------HHHHHHHHH
Confidence 9999999998877 6899999998 4553 444322 11 11222111 1111 012355556
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 197 EVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILD 252 (373)
Q Consensus 197 e~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~ 252 (373)
.+++..++..-..+..|...+....+...+ .+...+..+++.+.++..+....++
T Consensus 134 ksk~~kak~~~~~~eeElr~Ae~kfees~E-~a~~~M~~i~~~e~e~~~~L~~lv~ 188 (215)
T cd07593 134 LTKSQKAKKEDSRLEEELRRAKAKYEESSE-DVEARMVAIKESEADQYRDLTDLLD 188 (215)
T ss_pred HHHHHhccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHH
Confidence 655555543323344445544444433332 2466888888877777766666543
No 142
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=93.71 E-value=0.1 Score=41.36 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=30.7
Q ss_pred CCCCccCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeec
Q 017347 319 SDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERR 361 (373)
Q Consensus 319 ~~~ELsl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l 361 (373)
...+|.+.+|+.+.|+...+.+-|.++. .|+.|+||.+++-..
T Consensus 29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~ 72 (89)
T PF14603_consen 29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPL 72 (89)
T ss_dssp -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS---
T ss_pred CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCC
Confidence 4578999999999999999999899999 999999999988543
No 143
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=93.46 E-value=0.15 Score=36.26 Aligned_cols=36 Identities=31% Similarity=0.668 Sum_probs=29.3
Q ss_pred cCCCCCEEEEEeecCCC-eEEE-EeCCeeeEecCCCee
Q 017347 324 TLSVGDYVVVRKVTNNG-WAEG-ECKGKAGWFPFGYIE 359 (373)
Q Consensus 324 sl~~gd~I~V~~~~~~g-W~~G-~~~g~~G~fP~~Yve 359 (373)
.+..|+.|.|+.....+ |++. ..+|..||++..||+
T Consensus 18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence 46778999998887655 9999 559999999999984
No 144
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=93.39 E-value=0.067 Score=57.28 Aligned_cols=48 Identities=25% Similarity=0.242 Sum_probs=39.7
Q ss_pred eccCCCCCCCCccCCCCCEEEEEeecCC-CeEEEEe--CCeeeEecCCCee
Q 017347 312 VHPYQAESDVELTLSVGDYVVVRKVTNN-GWAEGEC--KGKAGWFPFGYIE 359 (373)
Q Consensus 312 lydf~a~~~~ELsl~~gd~I~V~~~~~~-gW~~G~~--~g~~G~fP~~Yve 359 (373)
..+|+...++.|-|..||.|+|++.... -||.|.. +++.|.||.+-|.
T Consensus 380 ~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 380 RETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT 430 (1039)
T ss_pred eeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence 3345567788999999999999998654 5999965 8899999998776
No 145
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=92.70 E-value=7 Score=34.82 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=38.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhc
Q 017347 105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL 145 (373)
Q Consensus 105 s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~ 145 (373)
+.|..+...+......++..+..|...+...+.+|++.+..
T Consensus 53 ~t~~~~w~~~~~e~~~~a~~h~~~a~~l~~~i~~~~~~~~~ 93 (191)
T cd07610 53 TSLGTSWNSLREETESAATVHEELSEKLSQLIREPLEKVKE 93 (191)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999885
No 146
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=92.57 E-value=4.5 Score=37.66 Aligned_cols=64 Identities=14% Similarity=0.230 Sum_probs=49.8
Q ss_pred CCChHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Q 017347 103 SGNTLS-KAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAE 167 (373)
Q Consensus 103 ~~s~~g-~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le 167 (373)
.|..|- .||.+||+..+.+-...-+........+++||+.|+.+ +++-.++.++.|++...+++
T Consensus 56 idqdYT~~al~~f~~~l~e~~~~ll~~~~~~~~~~~~pL~~f~k~-~i~~~Ke~rk~Fd~~q~kyD 120 (214)
T cd07609 56 IDQDYTPLALKRFGDGLKDFWGGVLSALKGNDSLILDPLRSFVKS-DIRPYKELRKNFEYYQRKYD 120 (214)
T ss_pred hCchhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 344564 69999999999999777777776678999999999997 87777766666777666555
No 147
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=92.19 E-value=10 Score=35.59 Aligned_cols=90 Identities=18% Similarity=0.205 Sum_probs=58.4
Q ss_pred hHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCc--hhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHH
Q 017347 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVE--IGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE 124 (373)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e--~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~ 124 (373)
|.|++.|+.+++-+..+.+.|..-. .. --.+| .+..|..-..+++.-. ....|..++..+=.....|+..
T Consensus 4 ~~G~~~l~~r~~~g~~~~~el~~f~----ke-Ra~iE~eYak~L~kLak~~~~~~---e~gsl~~aw~~i~~e~e~~a~~ 75 (239)
T cd07647 4 TTGFDTLLQRLKEGKKMCKELEDFL----KQ-RAKAEEDYGKALLKLSKSAGPGD---EIGTLKSSWDSLRKETENVANA 75 (239)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHhccCCCC---ccchHHHHHHHHHHHHHHHHHH
Confidence 5677888888887777777664321 10 01122 2333444444443211 2236888999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHhc
Q 017347 125 RGNLLKALGTQVAEPLRAMVL 145 (373)
Q Consensus 125 ~~~~~~~~~~~fl~PL~~~~~ 145 (373)
+..|...+... +..|..|..
T Consensus 76 H~~la~~L~~~-v~~l~~~~~ 95 (239)
T cd07647 76 HIQLAQSLREE-AEKLEEFRE 95 (239)
T ss_pred HHHHHHHHHHH-HHHHHHHHH
Confidence 99999999997 466777764
No 148
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=91.72 E-value=12 Score=35.35 Aligned_cols=109 Identities=18% Similarity=0.206 Sum_probs=66.2
Q ss_pred hhhHHHHHHHHhhccCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHH
Q 017347 84 IGTKLSEDSRKYGSDNT--CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDR 161 (373)
Q Consensus 84 ~~~~Lg~~m~~~g~e~~--~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~ 161 (373)
-+..|..-+.+|..-.. ....|....+...+=.--..++..+..+...+.+..+..|..++. + .+.+++.|+.
T Consensus 38 YA~~L~~L~kq~~kk~~~~~~~~s~v~~sW~~vl~qte~iA~~~~~~aE~l~~~i~~~l~~l~~--~---~~~~~k~~~~ 112 (234)
T cd07686 38 YASTLQNLCNQVDKESTSQLDYVSNVSKSWLHMVQQTEQLSKIMKTHAEELNSGPLHRLTMMIK--D---KQQVKKSYIG 112 (234)
T ss_pred HHHHHHHHHHHhcccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--H---HHHHHHHHHH
Confidence 34455555555532111 002234445666666667788889999999999999999988875 2 3456677888
Q ss_pred HHHHHHHHHHH--H---HHHhhhhccCCCCcchHHHHHHHHHHHHHH
Q 017347 162 MRQEAEAQAIE--V---SKRQAKVRETPGNPDLALKLDAAEVKLHDL 203 (373)
Q Consensus 162 ~r~~le~rrld--~---k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~ 203 (373)
..++|+..+.+ + .+-+.+.. .+|.+...|..|++++
T Consensus 113 ~~~kl~~e~~~~~~~~l~K~K~~Y~------~~~~~~e~ar~K~~~a 153 (234)
T cd07686 113 VHQQIEAEMYKVTKTELEKLKCSYR------QLTKEVNSAKEKYKDA 153 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH------HHHHHHHHHHHHHHHh
Confidence 87888776643 2 33333333 2355666666666554
No 149
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=91.69 E-value=13 Score=35.65 Aligned_cols=152 Identities=14% Similarity=0.167 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH---------HhcCCCchHHHHHHHHH-------HHHHHHHHHH
Q 017347 106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRA---------MVLGAPLDDARHLAQRY-------DRMRQEAEAQ 169 (373)
Q Consensus 106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~---------~~~~~~lk~~~~~k~~y-------~~~r~~le~r 169 (373)
.+..++.-|-.....|+.....+...+..-.++|++. |+. .+|+.+.....+ -++.++++..
T Consensus 61 TL~~sw~~~~~e~E~ia~~H~~l~~~L~~E~~e~ir~~QKe~~hk~~~~--g~ke~K~~e~~f~kaqK~w~k~~kk~~~s 138 (258)
T cd07681 61 TLEKAWHAFLTAAERLSEIHLELRENLVGEDSEKVRAWQKEAFHKQMIG--GFRESKEAEEGFRKAQKPWVKKLKEVESS 138 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh--hhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6778888888888899999999999999999999977 542 233322111111 1223334444
Q ss_pred HHHH--HHHhhhh---------ccCCCCcc-----------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHH
Q 017347 170 AIEV--SKRQAKV---------RETPGNPD-----------LALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQR 227 (373)
Q Consensus 170 rld~--k~r~~K~---------~e~~~~~~-----------~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~ 227 (373)
|-.| +.+..+. .+...+++ ...++..+..+|+.+-+.+......-...|..+-..-|.
T Consensus 139 Kk~Y~~~ck~e~~a~~~e~~~k~~~~~~~~q~~K~~~kleK~~~~~~k~~~~Y~~~v~~L~~~~~~w~e~m~~~~d~~Q~ 218 (258)
T cd07681 139 KKGYHAARKDERTAQTRETHAKADSTVSQEQLRKLQDRVEKCTQEAEKAKEQYEKALEELNRYNPRYMEDMEQAFEICQE 218 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4444 1111110 00011111 012334445556665555555556666667666555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHhHHHHHH
Q 017347 228 LTLQRLIAMVEAERTYHQRVLQI-----LDQLEGEMLS 260 (373)
Q Consensus 228 ~~l~~L~~~veAql~Yh~q~~~i-----L~~L~~eL~s 260 (373)
+--.+|.-|-++.+.||+.+ .+ +..++.+|..
T Consensus 219 ~EeeRi~flK~~L~~~~~~l-~~~~~~~~~~~~~~l~~ 255 (258)
T cd07681 219 AERKRLCFFKEMLLDLHQHL-DLSSSDSFHALYRDLHQ 255 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hhhccccHHHHHHHHHh
Confidence 45668888899999999855 44 4455555543
No 150
>KOG3812 consensus L-type voltage-dependent Ca2+ channel, beta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.56 E-value=0.091 Score=51.47 Aligned_cols=35 Identities=20% Similarity=0.486 Sum_probs=31.3
Q ss_pred CCccCCCCCEEEEEeecCCCeEEEEe---CCeeeEecC
Q 017347 321 VELTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPF 355 (373)
Q Consensus 321 ~ELsl~~gd~I~V~~~~~~gW~~G~~---~g~~G~fP~ 355 (373)
..++|...|.|.|-++-+++||.|+. ++..||+|+
T Consensus 80 ~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 80 HAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred ceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence 45789999999999999999999987 678999997
No 151
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=91.38 E-value=13 Score=35.16 Aligned_cols=89 Identities=18% Similarity=0.179 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCc--hhhHHHHHHHHhh--ccCCCCCCChHHHHHHHHHHHHHHH
Q 017347 46 QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVE--IGTKLSEDSRKYG--SDNTCTSGNTLSKAALSYGRARAQM 121 (373)
Q Consensus 46 ~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e--~~~~Lg~~m~~~g--~e~~~~~~s~~g~al~~~g~a~~~l 121 (373)
.|.|++.|+.+++-++...+.+..-. .. --++| .+..|..-..+++ .|.| .+..++..+-.-...+
T Consensus 3 ~~~G~~~l~~r~~~g~~~c~el~~f~----ke-Ra~iE~~Yak~L~kl~kk~~~~~e~g-----Tl~~a~~~~~~e~e~~ 72 (242)
T cd07671 3 LNTGYEILLQRLLDGRKMCKDVEELL----KQ-RAQAEERYGKELVQIARKAGGQTEIN-----TLKASFDQLKQQIENI 72 (242)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHhhccCcccch-----HHHHHHHHHHHHHHHH
Confidence 46678888888877766666664322 10 01122 2222333333333 2333 6778898888888899
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhc
Q 017347 122 EKERGNLLKALGTQVAEPLRAMVL 145 (373)
Q Consensus 122 ~~~~~~~~~~~~~~fl~PL~~~~~ 145 (373)
+..+..+...+.+. +.||..|.+
T Consensus 73 a~~H~~ia~~L~~~-~~~l~~f~~ 95 (242)
T cd07671 73 GNSHIQLAGMLREE-LKSLEEFRE 95 (242)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHH
Confidence 99999999999998 678888875
No 152
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=90.55 E-value=0.4 Score=34.85 Aligned_cols=35 Identities=34% Similarity=0.485 Sum_probs=28.8
Q ss_pred cCCCCCEEEEEeecCCCeEEEEeC-CeeeEecCCCe
Q 017347 324 TLSVGDYVVVRKVTNNGWAEGECK-GKAGWFPFGYI 358 (373)
Q Consensus 324 sl~~gd~I~V~~~~~~gW~~G~~~-g~~G~fP~~Yv 358 (373)
.+..|+.+.|+...+.+|+..... |..||+|..++
T Consensus 26 ~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~ 61 (63)
T smart00287 26 TLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV 61 (63)
T ss_pred EecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence 466889999988765599999884 99999987765
No 153
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.12 E-value=0.3 Score=45.18 Aligned_cols=38 Identities=26% Similarity=0.546 Sum_probs=31.9
Q ss_pred cCCCCCEEEEEeecC-CCeEEEEe-CCeeeEecCCCeeec
Q 017347 324 TLSVGDYVVVRKVTN-NGWAEGEC-KGKAGWFPFGYIERR 361 (373)
Q Consensus 324 sl~~gd~I~V~~~~~-~gW~~G~~-~g~~G~fP~~Yve~l 361 (373)
++..|+.+.|++..+ .||...+. +|..||||..|+...
T Consensus 49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~ 88 (206)
T PRK10884 49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTT 88 (206)
T ss_pred EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCC
Confidence 467899999998765 68999986 899999999998653
No 154
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=89.80 E-value=18 Score=34.12 Aligned_cols=28 Identities=21% Similarity=0.076 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 017347 192 KLDAAEVKLHDLKSNMAILGKEAAAAMA 219 (373)
Q Consensus 192 eL~~ae~K~~e~~e~~~~L~kea~~~m~ 219 (373)
+.+.+.+|+.+..--+..++|+-.-++.
T Consensus 162 ~~~K~~EKy~~m~~KL~~~hN~YlL~I~ 189 (237)
T cd07685 162 DRDKAKEKYVKSLWKLYALHNEYVLAVR 189 (237)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 5566666666665555666666555553
No 155
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=89.78 E-value=2.6 Score=40.43 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=12.6
Q ss_pred hhhhHHHHHHhcCCCchHHHHHHH
Q 017347 134 TQVAEPLRAMVLGAPLDDARHLAQ 157 (373)
Q Consensus 134 ~~fl~PL~~~~~~~~lk~~~~~k~ 157 (373)
.+||+||+.---. ||||+-
T Consensus 57 EQYLTPLQQKEV~-----iRHLka 75 (305)
T PF15290_consen 57 EQYLTPLQQKEVC-----IRHLKA 75 (305)
T ss_pred HHhcChHHHHHHH-----HHHHHH
Confidence 3899999754332 667654
No 156
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=89.77 E-value=18 Score=34.16 Aligned_cols=88 Identities=14% Similarity=0.188 Sum_probs=58.5
Q ss_pred hHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCc--hhhHHHHHHHHh--h-ccCCCCCCChHHHHHHHHHHHHHHH
Q 017347 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVE--IGTKLSEDSRKY--G-SDNTCTSGNTLSKAALSYGRARAQM 121 (373)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e--~~~~Lg~~m~~~--g-~e~~~~~~s~~g~al~~~g~a~~~l 121 (373)
+.+++.|+.+++.++.+.+.+..-+= . --.+| .+-.|..-..++ | .|.| .+..++..+-.-...|
T Consensus 4 ~~Gy~~l~~r~~~g~~~~~el~~f~k----E-RA~IE~~YaK~L~kLskk~~~g~~E~G-----Tl~~sw~~~~~E~e~~ 73 (240)
T cd07672 4 TGGYDCIIQHLNDGRKNCKEFEDFLK----E-RASIEEKYGKELLNLSKKKPCGQTEIN-----TLKRSLDVFKQQIDNV 73 (240)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHhcCCCCcccc-----hHHHHHHHHHHHHHHH
Confidence 45778888888888777777754331 0 00122 122233233332 2 2444 7889999999999999
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhc
Q 017347 122 EKERGNLLKALGTQVAEPLRAMVL 145 (373)
Q Consensus 122 ~~~~~~~~~~~~~~fl~PL~~~~~ 145 (373)
+..+..+...+... +.||..|.+
T Consensus 74 a~~H~~la~~L~~~-~~~~~~f~~ 96 (240)
T cd07672 74 GQSHIQLAQTLRDE-AKKMEDFRE 96 (240)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHH
Confidence 99999999999986 558988864
No 157
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=89.51 E-value=0.21 Score=52.21 Aligned_cols=59 Identities=25% Similarity=0.330 Sum_probs=42.4
Q ss_pred eEEEEeccCCCCCC------CCccCCCCCEEEEEeec-CCCeEEEEe--CCeeeEecCCCeeeccCCC
Q 017347 307 FLGEVVHPYQAESD------VELTLSVGDYVVVRKVT-NNGWAEGEC--KGKAGWFPFGYIERRDRVL 365 (373)
Q Consensus 307 ~~~~alydf~a~~~------~ELsl~~gd~I~V~~~~-~~gW~~G~~--~g~~G~fP~~Yve~l~~~p 365 (373)
++-.++-.|.+-.+ .-|.+.+||++.+..-. .+.||+|+. .+..||||++-|.....+|
T Consensus 605 pkm~~vq~ysg~p~Pag~igP~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~vp 672 (865)
T KOG2996|consen 605 PKMDVVQNYSGIPPPAGSIGPRLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSVP 672 (865)
T ss_pred cchhhhhccCCCCCCCccCCCceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCCC
Confidence 44455555554332 34778999999876654 567999998 5689999999998766555
No 158
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=88.62 E-value=21 Score=33.46 Aligned_cols=92 Identities=17% Similarity=0.135 Sum_probs=57.4
Q ss_pred HHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 52 RLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT--CTSGNTLSKAALSYGRARAQMEKERGNLL 129 (373)
Q Consensus 52 ~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~--~~~~s~~g~al~~~g~a~~~l~~~~~~~~ 129 (373)
+|-.+...++.|...+-++.+... |.+..|..-+.+|..-.. .+....|..++..+=.....|+..+..|.
T Consensus 13 rlK~~~~~~ke~~~FlkkRa~iEe-------eYak~L~KLak~~~~~~~~~~~~~gs~~~a~~~il~~~e~lA~~h~~~a 85 (234)
T cd07652 13 RLKQSIASAKEFATFLKKRAAIEE-------EHARGLKKLARTTLDTYKRPDHKQGSFSNAYHSSLEFHEKLADNGLRFA 85 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445545544444322 233345554444443211 11233688999999999999999999999
Q ss_pred HHHhhhhhHHHHHHhcCCCchHHH
Q 017347 130 KALGTQVAEPLRAMVLGAPLDDAR 153 (373)
Q Consensus 130 ~~~~~~fl~PL~~~~~~~~lk~~~ 153 (373)
..+. ++.+||..+.. +++..|
T Consensus 86 ~~L~-~~~~eL~~l~~--~~e~~R 106 (234)
T cd07652 86 KALN-EMSDELSSLAK--TVEKSR 106 (234)
T ss_pred HHHH-HHHHHHHHHHH--HHHHHH
Confidence 9995 79999998885 566655
No 159
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=86.29 E-value=1.4 Score=31.46 Aligned_cols=35 Identities=26% Similarity=0.530 Sum_probs=28.3
Q ss_pred ccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCe
Q 017347 323 LTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 358 (373)
Q Consensus 323 Lsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yv 358 (373)
..+..|..+.|.. ...+|.+.+.+|..||++.+.|
T Consensus 19 ~~l~~g~~v~v~~-~~~~W~~V~~~g~~GWv~~~~l 53 (55)
T PF06347_consen 19 ARLEPGVPVRVIE-CRGGWCKVRADGRTGWVHKSLL 53 (55)
T ss_pred EEECCCCEEEEEE-ccCCeEEEEECCeEEeEEeeec
Confidence 3466788888884 4779999999999999998765
No 160
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.07 E-value=58 Score=33.98 Aligned_cols=66 Identities=20% Similarity=0.228 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 106 TLSKAALSYGRARAQMEKERGNL-LKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEV 173 (373)
Q Consensus 106 ~~g~al~~~g~a~~~l~~~~~~~-~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~ 173 (373)
.+..++..+..+...+..+...+ ...-...+.++|+.|+. .+..++..-.++.++-+.++..+.++
T Consensus 330 ~l~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~i~--~~~~~k~~~~~r~~~~~~~~~~~~~~ 396 (503)
T KOG2273|consen 330 ELSEALSGLAKVIESLSKLLEKLTAEKDSKKLAEQLREYIR--YLESVKSLFEQRSKALQKLQEAQREL 396 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999 88888899999999995 33334333333433455555555555
No 161
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=82.47 E-value=41 Score=31.11 Aligned_cols=68 Identities=18% Similarity=0.055 Sum_probs=44.1
Q ss_pred HHHHHHHHhhccCCC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhc-CCCchHHHH
Q 017347 87 KLSEDSRKYGSDNTC---TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL-GAPLDDARH 154 (373)
Q Consensus 87 ~Lg~~m~~~g~e~~~---~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~-~~~lk~~~~ 154 (373)
++|..+..-+.-|.. ...+.|..|+...|.++.-||+.-.+.-..=-..+++-|..|.- =+.+.||-+
T Consensus 52 kiG~af~~LsqaFe~d~~~~s~~L~~Av~~tG~~y~~IG~~faeQpk~D~~pl~d~L~~Y~GlL~~fPDii~ 123 (207)
T cd07669 52 KLGNAFQAISHSFQLDPPYSSEALNNAISHTGRTYEAVGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIH 123 (207)
T ss_pred HHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHhCcccCCccHHH
Confidence 566666655554441 12245889999999999999998777766655666666665542 013566654
No 162
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=82.06 E-value=30 Score=32.37 Aligned_cols=126 Identities=13% Similarity=0.150 Sum_probs=69.6
Q ss_pred CCccccchHHhh-hhHHHHHHHHHhhh---------hhhH-HHHHhhhhcccccC----CCCCCchhhHHHHHHHHhhcc
Q 017347 34 SDNVVTDEAELH-QHQRLERLYISTRA---------GKHF-QRDIVRGVEGYIVT----GSKQVEIGTKLSEDSRKYGSD 98 (373)
Q Consensus 34 ~~~~~~~e~e~~-~~~~~e~l~~~~~~---------~k~~-~~~i~r~~e~~~~~----~~~~~e~~~~Lg~~m~~~g~e 98 (373)
++++...|..+. .+...+++...|.. +|.| ..+|.+.+-+..++ |...++.|+-||.+- .||.-
T Consensus 16 d~df~~l~~~~D~tk~~~~~i~~~t~~~LqPNp~~R~~~~~~~k~~~k~~~~~~~~~~Lg~~M~~~g~~~g~~s-~~G~a 94 (220)
T cd07617 16 DAHFENLLARADSTKNWTEKILRQTEVLLQPNPSARVEEFLYEKLDRKVPSRVTNAELLGQYMTEAANDFGPGT-PYGKT 94 (220)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHhcCCCC-chHHH
Confidence 455665555555 56677777766542 2222 34555545332221 233344444444321 23333
Q ss_pred CCCCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Q 017347 99 NTCTSGNTLSKAALSYGRARAQM-EKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAE 167 (373)
Q Consensus 99 ~~~~~~s~~g~al~~~g~a~~~l-~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le 167 (373)
+. .+|.|..++|++...+ ..+..+|+.-+....-.-|+.... ..|-...++-.||..+..+.
T Consensus 95 L~-----~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k--~RKkLe~rRLd~D~~K~r~~ 157 (220)
T cd07617 95 LI-----KVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISK--ERRLLQNRRLDLDACKARLK 157 (220)
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 32 5789999999998864 568888888887655445554442 33333344556776666653
No 163
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=81.32 E-value=1.3 Score=44.64 Aligned_cols=53 Identities=26% Similarity=0.318 Sum_probs=43.6
Q ss_pred EEEEeccCCCCCCCCccCCCCCEEEEEeecCCCeEEEEe--CCeeeEecCCCeee
Q 017347 308 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIER 360 (373)
Q Consensus 308 ~~~alydf~a~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--~g~~G~fP~~Yve~ 360 (373)
-.+|+++..+....|+.+++||+|.|-.--=+|..+|.+ .++.|+||+.=|+.
T Consensus 511 n~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 511 NVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE 565 (580)
T ss_pred ceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence 468999999999999999999999887665566677766 78999999865553
No 164
>KOG4384 consensus Uncharacterized SAM domain protein [General function prediction only]
Probab=80.92 E-value=2.3 Score=42.07 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=47.8
Q ss_pred eEEEEeccCCC--CCCCCccCCCCCEEEEEeecCCCeEEEEeCCeeeEecCCCeeec
Q 017347 307 FLGEVVHPYQA--ESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR 361 (373)
Q Consensus 307 ~~~~alydf~a--~~~~ELsl~~gd~I~V~~~~~~gW~~G~~~g~~G~fP~~Yve~l 361 (373)
..+++.-+|.+ .+.++|-+..||+|.++.+...|-|.|-++++.|-|+.-||..+
T Consensus 137 ~~~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~~ 193 (361)
T KOG4384|consen 137 GRARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDVI 193 (361)
T ss_pred ccccccccCCCCcccccchhhcccchhhccccCccccccccccCcccccccceeccc
Confidence 44566666664 57889999999999999999999999999999999999999875
No 165
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=80.55 E-value=55 Score=31.34 Aligned_cols=153 Identities=13% Similarity=0.136 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCC-------CchHHHHH-------HHHHHHHHHHHHHHHH
Q 017347 106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGA-------PLDDARHL-------AQRYDRMRQEAEAQAI 171 (373)
Q Consensus 106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~-------~lk~~~~~-------k~~y~~~r~~le~rrl 171 (373)
.+-.+...+=..-..|+..+..+...+.+..+++++..+... .+|+.+.. -+-..+..++++.-|=
T Consensus 61 tl~~aw~~i~~etE~ia~~H~~la~~L~~e~~e~~r~~qk~~~~k~~~~~~ke~K~~e~~~~KaQK~~~k~~k~v~~sKk 140 (258)
T cd07680 61 SLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKK 140 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 466677777777888889999999989888999985222100 12222200 0001122233444333
Q ss_pred HH-HH-H---hh-----hh-ccCCCCcc-----------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHH
Q 017347 172 EV-SK-R---QA-----KV-RETPGNPD-----------LALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT 229 (373)
Q Consensus 172 d~-k~-r---~~-----K~-~e~~~~~~-----------~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~ 229 (373)
.| +. | .+ +. .+...++. ....+..++.+|+..-+.+......-...|..+-..-|.+-
T Consensus 141 ~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~~~~y~~~m~~vfd~~Q~~E 220 (258)
T cd07680 141 AYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKTTPQYMENMEQVFEQCQQFE 220 (258)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33 00 0 00 00 01111111 11233334444555545554444555566666655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHhHHHHH
Q 017347 230 LQRLIAMVEAERTYHQRVLQI-----LDQLEGEML 259 (373)
Q Consensus 230 l~~L~~~veAql~Yh~q~~~i-----L~~L~~eL~ 259 (373)
-.+|.-|-++...+|+.+ .+ +..+...|.
T Consensus 221 e~Ri~flk~~l~~~~~~l-~~~~~~~~~~~~~~l~ 254 (258)
T cd07680 221 EKRLVFLKEVLLDIKRHL-NLAESSSYAHVYRELE 254 (258)
T ss_pred HHHHHHHHHHHHHHHHHc-CcccchhHHHHHHHHH
Confidence 668888888888888654 43 444555444
No 166
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=79.95 E-value=38 Score=29.11 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017347 190 ALKLDAAEVKLHDLKSN 206 (373)
Q Consensus 190 ~~eL~~ae~K~~e~~e~ 206 (373)
+.+++.|..+|+.....
T Consensus 134 ~~~~~~ar~~y~~~~~~ 150 (194)
T cd07307 134 EEELQEAKEKYEELREE 150 (194)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666666655444
No 167
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=79.52 E-value=56 Score=30.79 Aligned_cols=115 Identities=14% Similarity=0.112 Sum_probs=62.4
Q ss_pred HHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 017347 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (373)
Q Consensus 87 ~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~l 166 (373)
.+|..+..+++++. . ....-|..+..-.+++-+.-.++...+...+..- +.+....|+.|+++.++.
T Consensus 76 ~~A~~~~~~ae~l~--~--~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~---------~~el~k~Kk~Y~~~~~e~ 142 (237)
T cd07657 76 QLSKLIKQHAEALE--S--GTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKL---------TDEVEKLKSEYQKLLEDY 142 (237)
T ss_pred HHHHHHHHHHHHHH--h--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 45666667776665 2 1223333443333333333333334333333322 233445678899999999
Q ss_pred HHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 017347 167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA 220 (373)
Q Consensus 167 e~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~ 220 (373)
+..|--|.+.-.+..- ...++..|+.+|++..-.|....++-.-.+..
T Consensus 143 e~Ar~k~e~a~~~~~~------~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~ 190 (237)
T cd07657 143 KAAKSKFEEAVVKGGR------GGRKLDKARDKYQKACRKLHLCHNDYVLALLE 190 (237)
T ss_pred HHHHHHHHHHHhhccc------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888777222111100 12378888888988777766666655544444
No 168
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=79.07 E-value=62 Score=31.04 Aligned_cols=69 Identities=13% Similarity=0.041 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHH
Q 017347 192 KLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVL----QILDQLEGEMLS 260 (373)
Q Consensus 192 eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~----~iL~~L~~eL~s 260 (373)
+...++.+|+.+-+.+......-...|..+-..-|.+--.+|.-|-++.+++|+.+. .-+..+..+|..
T Consensus 183 ~~~k~~~~Y~~~l~~L~~~~~~y~e~m~~~fe~~Q~~E~eRi~F~K~~l~~~~~~l~i~~~~~~~~i~~~L~~ 255 (258)
T cd07679 183 DVLKTKEKYEKSLKELDQTTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVASYKNIYRELEQ 255 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhhhHHHHHHHHHh
Confidence 445555666666666666677777777766555545457799999999999888652 225555555543
No 169
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=76.87 E-value=79 Score=31.07 Aligned_cols=151 Identities=17% Similarity=0.250 Sum_probs=86.9
Q ss_pred HHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHH
Q 017347 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQE 165 (373)
Q Consensus 87 ~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~ 165 (373)
-+|++++.-|..-+ .-.-..|..+||+.++.|++-.......++ ..+.-|+.+++. -+-|.+ -.|+ |-...=+
T Consensus 171 ~FGd~F~~i~vhEp---Qq~AsEAF~~Fgd~HR~ieK~g~~~~k~ik-pmlsDL~tYlnk-aiPDTrLTikk-YlDvKfe 244 (429)
T KOG3651|consen 171 EFGDIFCDIAVHEP---QQTASEAFSSFGDKHRMIEKKGSESAKPIK-PMLSDLQTYLNK-AIPDTRLTIKK-YLDVKFE 244 (429)
T ss_pred HhhhhhhhhhccCc---chhHHHHHHHHHHHHHHHHHhccchhhhhh-HHHHHHHHHHhc-cCCcchhhhHH-hhhhhHH
Confidence 35777777776543 224568999999999999988777766665 356667778876 666666 3333 3221111
Q ss_pred HHHHHHHHHHHhhhhccC----------------CCCcchHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Q 017347 166 AEAQAIEVSKRQAKVRET----------------PGNPDLALKL---DAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQ 226 (373)
Q Consensus 166 le~rrld~k~r~~K~~e~----------------~~~~~~~~eL---~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~ 226 (373)
. |.|-.+ -|-.++ .+|=+...-| +.|.++|-..+.+ +..-|--.+--+-
T Consensus 245 Y----LSYCLK-vKEMDDEE~~f~AlqEPLYRVeTGNYEYRliLRCRQeaRarF~kmR~D-------VleKmELLdqKHv 312 (429)
T KOG3651|consen 245 Y----LSYCLK-VKEMDDEEVEFVALQEPLYRVETGNYEYRLILRCRQEARARFMKMRDD-------VLEKMELLDQKHV 312 (429)
T ss_pred H----HHHHHh-hhhccchhhceeeecCceeEeecCCeeeehhHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhHH
Confidence 1 122111 111222 1122222222 2344555555544 7777743222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 017347 227 RLTLQRLIAMVEAERTYHQRVLQILDQLE 255 (373)
Q Consensus 227 ~~~l~~L~~~veAql~Yh~q~~~iL~~L~ 255 (373)
+=...+|..|++....||+.|.++|.+..
T Consensus 313 ~Di~~qL~~l~~tmak~~~~c~~~L~~~~ 341 (429)
T KOG3651|consen 313 RDIAQQLAILAKTMAKCQQECAEILKERI 341 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 11145899999999999999999998765
No 170
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=74.22 E-value=3.7 Score=31.72 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=20.4
Q ss_pred CccCCCCCEEEEEeec------CCCeEEEEe
Q 017347 322 ELTLSVGDYVVVRKVT------NNGWAEGEC 346 (373)
Q Consensus 322 ELsl~~gd~I~V~~~~------~~gW~~G~~ 346 (373)
-|+++.||.+.|.... +.+||.|..
T Consensus 3 FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~V 33 (75)
T PF11302_consen 3 FLSVKPGDTVIVQDEQEVGQKQDKDWWMGQV 33 (75)
T ss_pred ccccCCCCEEEEecCccccccCCCCcEEEEE
Confidence 3789999999887754 678999975
No 171
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=73.96 E-value=56 Score=30.62 Aligned_cols=125 Identities=13% Similarity=0.247 Sum_probs=76.9
Q ss_pred CCccccchHHhh-hhHHHHHHHHHhhh---------hhhHH-HHHhh-----hhcccccC----CCCCCchhhHHHHHHH
Q 017347 34 SDNVVTDEAELH-QHQRLERLYISTRA---------GKHFQ-RDIVR-----GVEGYIVT----GSKQVEIGTKLSEDSR 93 (373)
Q Consensus 34 ~~~~~~~e~e~~-~~~~~e~l~~~~~~---------~k~~~-~~i~r-----~~e~~~~~----~~~~~e~~~~Lg~~m~ 93 (373)
.|++...|..+. .+...++|+..|.. +|.|. ..+.| ...++.++ |...++.|+-||++-.
T Consensus 6 d~~f~~le~~~d~t~~~~~~l~~~t~~~LqPNp~~R~~~~~~~~~~k~rg~~k~~~~p~~~~~Lg~~M~~~G~~lg~dS~ 85 (223)
T cd07614 6 DDDFKEMEKKVDLTSKAVTEVLARTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQSEGLLGETMIRYGKELGDESN 85 (223)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccccCCCCCChHhHHHHHHHHHHhhCCCCCh
Confidence 566776666666 68899999988765 22222 22333 34444432 3445666555555332
Q ss_pred HhhccCCCCCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 017347 94 KYGSDNTCTSGNTLSKAALSYGRARAQMEK-ERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (373)
Q Consensus 94 ~~g~e~~~~~~s~~g~al~~~g~a~~~l~~-~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~l 166 (373)
||.-+- .||.|..++|+++..... +..+|+.-+....-.-|+.... .-|....++-.||..++.+
T Consensus 86 -~G~aL~-----~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k--~RKkLe~rRLdyD~~K~r~ 151 (223)
T cd07614 86 -FGDALL-----DAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKDLKEIQH--HLKKLEGRRLDFDYKKKRQ 151 (223)
T ss_pred -HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcC
Confidence 455444 578999999999877655 8888888877654355555542 4444445566788766655
No 172
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=71.57 E-value=92 Score=29.41 Aligned_cols=83 Identities=12% Similarity=0.167 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHH
Q 017347 152 ARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQ 231 (373)
Q Consensus 152 ~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~ 231 (373)
....|+.|+.+-+.+++.|=.+..--.+ + . +...|+.+|+++...|....++-.-++...-..++..+-.
T Consensus 129 l~K~K~~Y~~~~~~~e~ar~K~~~a~~~----g-k-----~~~Ka~~k~~~~~~km~~~kN~Yll~i~~aN~~k~~Yy~~ 198 (234)
T cd07686 129 LEKLKCSYRQLTKEVNSAKEKYKDAVAK----G-K-----ETEKARERYDKATMKLHMLHNQYVLAVKGAQLHQHQYYDF 198 (234)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhc----c-c-----chHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4466888999999999766544211000 0 0 2345777788888887777777665554443333332333
Q ss_pred HHHHHHHHHHHHH
Q 017347 232 RLIAMVEAERTYH 244 (373)
Q Consensus 232 ~L~~~veAql~Yh 244 (373)
.|-.+++...+.+
T Consensus 199 ~lP~lLd~lQ~l~ 211 (234)
T cd07686 199 TLPLLLDSLQKMQ 211 (234)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 173
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=71.44 E-value=87 Score=29.06 Aligned_cols=68 Identities=10% Similarity=-0.023 Sum_probs=42.8
Q ss_pred HHHHHHHHhhccCCC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhc-CCCchHHHH
Q 017347 87 KLSEDSRKYGSDNTC---TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL-GAPLDDARH 154 (373)
Q Consensus 87 ~Lg~~m~~~g~e~~~---~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~-~~~lk~~~~ 154 (373)
++|..+..-+.-|.. ...+.+..|+..-|.++.-||+.-.+.-..=-..+++-|..|.- =+.+-||-+
T Consensus 52 kiG~af~~LsqaFe~d~~~~~~~L~~Ai~~tg~~y~~IG~~faeQpk~Dl~pl~d~L~~Y~G~L~~fPDIi~ 123 (210)
T cd07668 52 KIGKALQSLATVFSTSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMETNHEYKGFLGCFPDIIG 123 (210)
T ss_pred HHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCccccCccHHH
Confidence 566666665555441 22346889999999999999988777666555555666655431 013556553
No 174
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=71.13 E-value=79 Score=30.11 Aligned_cols=168 Identities=14% Similarity=0.074 Sum_probs=81.9
Q ss_pred ccccchHHhh-hhHHHHHHHHHhhhhhhH-----HHHHhhhh-cccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHH
Q 017347 36 NVVTDEAELH-QHQRLERLYISTRAGKHF-----QRDIVRGV-EGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLS 108 (373)
Q Consensus 36 ~~~~~e~e~~-~~~~~e~l~~~~~~~k~~-----~~~i~r~~-e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g 108 (373)
++...|.-+. ...-.++++..+.+.-.= .+++.+.. |+.+ +-..+|.+.-||.++. ||.-+. .||
T Consensus 16 ~~~~le~r~D~~k~~~~~i~k~~~~~lqpnp~~r~ek~~kk~p~~~L--gq~M~e~~~~lg~~s~-~g~aL~-----~~g 87 (246)
T cd07618 16 DLLQIERRLDTVRSVSHNVHKRLIACFQGQVGTDAEKRHKKLPLTAL--AQNMQEGSAQLGEESL-IGKMLD-----TCG 87 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccCCHHHH--HHHHHHHHhcCCCCcc-HHHHHH-----HHH
Confidence 4443444444 356677777776552000 12222222 4433 2334555555555432 444443 577
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHH--HHH--HHHhhhhc--
Q 017347 109 KAALSYGRARAQMEK-ERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQA--IEV--SKRQAKVR-- 181 (373)
Q Consensus 109 ~al~~~g~a~~~l~~-~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rr--ld~--k~r~~K~~-- 181 (373)
.++-++|++....+. ++.+|..-+..-.-.-|..... ..|-...+.-.||..|..+.+-. .+- ..-..|+.
T Consensus 88 ea~~kla~~~~~~d~~ie~~fl~PL~~~le~dlk~I~K--~RkkLe~~RLD~D~~K~r~~~a~~~~~~~~~~~~~K~~~l 165 (246)
T cd07618 88 DAENKLAFELSQHEVLLEKDILDPLNQLAEVEIPNIQK--QRKQLAKLVLDWDSARGRYNQAHKSSGTNFQAMPSKIDML 165 (246)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHhHHhhHHHHHHHHHhccccCccccccccchhhhh
Confidence 888888877776665 6667777766433333332221 22222233334555454442110 000 00012311
Q ss_pred -cCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 017347 182 -ETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAA 217 (373)
Q Consensus 182 -e~~~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~ 217 (373)
++ ..++..++..+++.|.. +.+..|.++...+
T Consensus 166 ~ee--~e~a~~k~E~~kD~~~~--dm~~~l~~e~e~~ 198 (246)
T cd07618 166 KEE--MDEAGNKVEQCKDQLAA--DMYNFASKEGEYA 198 (246)
T ss_pred HHH--HHHHHHHHHHHHHHHHH--HHHHHHHcCHHHH
Confidence 11 13557789999888887 6666776665533
No 175
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=70.50 E-value=6 Score=36.59 Aligned_cols=37 Identities=22% Similarity=0.443 Sum_probs=31.8
Q ss_pred cCCCCCEEEEEeecCC-CeEEEEe-CCeeeEecCCCeee
Q 017347 324 TLSVGDYVVVRKVTNN-GWAEGEC-KGKAGWFPFGYIER 360 (373)
Q Consensus 324 sl~~gd~I~V~~~~~~-gW~~G~~-~g~~G~fP~~Yve~ 360 (373)
+++.||.+.|+..... ||..... +|..||||..++..
T Consensus 49 ~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~ 87 (205)
T COG3103 49 SIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTS 87 (205)
T ss_pred EecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhcc
Confidence 6789999999888644 8999998 89999999988765
No 176
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=70.49 E-value=6.2 Score=37.10 Aligned_cols=126 Identities=11% Similarity=0.158 Sum_probs=63.6
Q ss_pred CCccccchHHhh-hhHHHHHHHHHhhh---------hhhH-HHHHhhhhcccccC----CCCCCchhhHHHHHHHHhhcc
Q 017347 34 SDNVVTDEAELH-QHQRLERLYISTRA---------GKHF-QRDIVRGVEGYIVT----GSKQVEIGTKLSEDSRKYGSD 98 (373)
Q Consensus 34 ~~~~~~~e~e~~-~~~~~e~l~~~~~~---------~k~~-~~~i~r~~e~~~~~----~~~~~e~~~~Lg~~m~~~g~e 98 (373)
+|++...|.... .+...++|+..|.. ++.| ..+|-+.+.++.++ |...++.|+-||.+ ..||.-
T Consensus 16 d~df~~l~~~~d~t~~~~~~i~~~t~~~LqPNp~~r~e~~~~~k~~~~~~~~~~~~~~Lg~~M~~~g~~~g~~-S~~G~a 94 (229)
T cd07616 16 DAHLENLLSKAECTKHWTEKIMKQTEVLLQPNPNARIEEFVYEKLDRKAPSRMNNPELLGQYMIDAGNEFGPG-TAYGNA 94 (229)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHhcCCC-CcHHHH
Confidence 455555554444 56666666665532 1212 22343333344443 23335554444442 223333
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Q 017347 99 NTCTSGNTLSKAALSYGRARAQMEK-ERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAE 167 (373)
Q Consensus 99 ~~~~~~s~~g~al~~~g~a~~~l~~-~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le 167 (373)
+- .||.|..++|+++..+.. +..+|+.-+.+-.-.-|+.... .-|....++-.||..|..+.
T Consensus 95 L~-----~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k--~RKkLe~rRLdyD~~K~r~~ 157 (229)
T cd07616 95 LI-----KCGETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITK--ERKLLQNKRLDLDAAKTRLK 157 (229)
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 33 567888888888876544 4556776666443333333321 33333344455776666664
No 177
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=70.03 E-value=95 Score=28.94 Aligned_cols=41 Identities=22% Similarity=0.359 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcC
Q 017347 106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG 146 (373)
Q Consensus 106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~ 146 (373)
.|..+...+=..-..++..+..+...+...+..||+.|..+
T Consensus 59 ~~~~~w~~i~~e~e~~a~~H~~la~~l~~~ve~~l~~~~~~ 99 (228)
T cd07650 59 VFQNPWLTIESETEFIAASHGELAQRIETDVEEPLRDFATS 99 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44577777778888999999999999999999999999975
No 178
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=70.01 E-value=81 Score=28.14 Aligned_cols=58 Identities=21% Similarity=0.285 Sum_probs=26.8
Q ss_pred HHHHHHHhhccCCCCCCChHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHH
Q 017347 88 LSEDSRKYGSDNTCTSGNTLSKAALS----YGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDA 152 (373)
Q Consensus 88 Lg~~m~~~g~e~~~~~~s~~g~al~~----~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~ 152 (373)
|+.+|.++|..|. .||..-.. ++.+...++.+-...........-.=...+++ +|++.
T Consensus 37 l~~~~~elg~~~~-----~Ls~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--~L~~y 98 (218)
T cd07596 37 LGSALGEFGKALI-----KLAKCEEEVGGELGEALSKLGKAAEELSSLSEAQANQELVKLLE--PLKEY 98 (218)
T ss_pred HHHHHHHHHHHHH-----HHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHH
Confidence 4555555555554 33333322 45555555555555444444443333334443 44443
No 179
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=68.47 E-value=1e+02 Score=28.59 Aligned_cols=68 Identities=15% Similarity=0.011 Sum_probs=41.9
Q ss_pred HHHHHHHHhhccCCC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhc-CCCchHHHH
Q 017347 87 KLSEDSRKYGSDNTC---TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL-GAPLDDARH 154 (373)
Q Consensus 87 ~Lg~~m~~~g~e~~~---~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~-~~~lk~~~~ 154 (373)
++|..+..-+.-|.. ...+.|..|+...|+++.-||+.-.+.-..=-..|++-|..|.- =+.+.||-+
T Consensus 52 kiG~af~~LsqaF~~d~~~~s~~L~~Av~~tg~~y~~IG~~faeQpk~Dl~Pl~d~L~~Y~G~L~~fPDii~ 123 (207)
T cd07670 52 KVGQSFKGLSQAFELDQQAFSAGLNQAIAFTGEAYEAIGELFAEQPRQDLDPVMDLLALYQGHLANFPDIIH 123 (207)
T ss_pred HHHHHHHHHHHHHccCCcccchHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCccccCCchHH
Confidence 455555555544431 12347899999999999999988776666555555555555431 013566653
No 180
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=66.87 E-value=7.9 Score=40.28 Aligned_cols=38 Identities=26% Similarity=0.532 Sum_probs=32.5
Q ss_pred cCCCCCEEEEEeecCCCeEEEEe-CCeeeEecCCCeeec
Q 017347 324 TLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERR 361 (373)
Q Consensus 324 sl~~gd~I~V~~~~~~gW~~G~~-~g~~G~fP~~Yve~l 361 (373)
++..|+.|.|+...+.||+.-.. +|+.|||-..||..-
T Consensus 104 sl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~~ 142 (481)
T PRK13914 104 SIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTDK 142 (481)
T ss_pred eecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccCC
Confidence 57899999997655779999999 599999999998753
No 181
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=61.28 E-value=28 Score=34.35 Aligned_cols=90 Identities=16% Similarity=0.080 Sum_probs=52.7
Q ss_pred HHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHH------------------------H-hhccCCCCC
Q 017347 49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSR------------------------K-YGSDNTCTS 103 (373)
Q Consensus 49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~------------------------~-~g~e~~~~~ 103 (373)
+.+++....++.-.|+.........+.+++.+.+|- +++.+. + |++-++
T Consensus 177 ~q~~~~~l~~a~~~yq~a~~ey~~~~~~~~~ks~e~---~~~~l~~~~~~g~~v~s~re~~d~W~~~ae~~~~e~~~--- 250 (320)
T TIGR01834 177 MQSQLQRLFRDWMEYQQAMADYQLLEADIGYKSFAA---LMSDLLARAKSGKPVKTAKALYDLWVIAAEEAYAEVFA--- 250 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHc---
Confidence 445666666666667776665555544433333321 222222 1 222332
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh
Q 017347 104 GNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMV 144 (373)
Q Consensus 104 ~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~ 144 (373)
...|+++.-.+.++...+-....++...+-.++--|-|.=+
T Consensus 251 S~efak~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsEl 291 (320)
T TIGR01834 251 SEENAKVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSEL 291 (320)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 23678888888888888877777777777777777766533
No 182
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=58.61 E-value=18 Score=26.15 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=22.5
Q ss_pred cCCCCCEEEEEeec-CCCeEEEEeCCeeeEecC
Q 017347 324 TLSVGDYVVVRKVT-NNGWAEGECKGKAGWFPF 355 (373)
Q Consensus 324 sl~~gd~I~V~~~~-~~gW~~G~~~g~~G~fP~ 355 (373)
.+..|+-|.|++.. |..|...+...-.|||++
T Consensus 22 ~l~~gtPv~i~H~S~D~~W~fV~t~~~~GWV~s 54 (54)
T PF12913_consen 22 ALHPGTPVYILHTSRDGAWAFVQTPFYSGWVKS 54 (54)
T ss_dssp EE-TT-EEEEEEE-TTSSEEEEE-SS-EEEEEG
T ss_pred ccCCCCCEEEEEECCCCCEEEEecCCeeEeeeC
Confidence 46788999999987 556999999999999974
No 183
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=58.60 E-value=2.5e+02 Score=29.87 Aligned_cols=130 Identities=13% Similarity=0.129 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 017347 106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPG 185 (373)
Q Consensus 106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~ 185 (373)
-|-+|-..+..+...|..+..++...... |+-|...-+. .-..+.+++.+|+.+|+.+-..|..|---
T Consensus 99 ~f~~a~~~~~~~~~~l~~~e~~~~~i~~~--l~~l~~~e~~-nr~~v~~l~~~y~~~rk~ll~~~~~~G~a--------- 166 (569)
T PRK04778 99 RFRKAKHEINEIESLLDLIEEDIEQILEE--LQELLESEEK-NREEVEQLKDLYRELRKSLLANRFSFGPA--------- 166 (569)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCccccch---------
Confidence 47788888888888888887777654432 3434433332 33345588888999888887766666111
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 186 NPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQIL 251 (373)
Q Consensus 186 ~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL 251 (373)
.+.++..|...+..|+.-.+.+. =|+.......-...+.+ +..|...++.--.++..|...+
T Consensus 167 ~~~le~~l~~~e~~f~~f~~l~~-~Gd~~~A~e~l~~l~~~---~~~l~~~~~~iP~l~~~~~~~~ 228 (569)
T PRK04778 167 LDELEKQLENLEEEFSQFVELTE-SGDYVEAREILDQLEEE---LAALEQIMEEIPELLKELQTEL 228 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 12334466666665554433311 13332222211111111 4555555555555555555544
No 184
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=57.78 E-value=13 Score=26.77 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.2
Q ss_pred cCCCCCEEEEEeecCCCeEEEEe
Q 017347 324 TLSVGDYVVVRKVTNNGWAEGEC 346 (373)
Q Consensus 324 sl~~gd~I~V~~~~~~gW~~G~~ 346 (373)
.|.+|+.|.+....+++||.|..
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V 24 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVV 24 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEE
Confidence 47899999999877889999976
No 185
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=55.53 E-value=1.9e+02 Score=27.40 Aligned_cols=42 Identities=10% Similarity=0.064 Sum_probs=29.9
Q ss_pred HHHHHHHHhhccCCC---CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 017347 87 KLSEDSRKYGSDNTC---TSGNTLSKAALSYGRARAQMEKERGNL 128 (373)
Q Consensus 87 ~Lg~~m~~~g~e~~~---~~~s~~g~al~~~g~a~~~l~~~~~~~ 128 (373)
++|..+..-|.-|.. .....|-.|+...|+++..||..-.+.
T Consensus 81 kiG~af~~Ls~afe~d~~~~~~~L~~Al~~tg~~y~~Ig~l~~~Q 125 (237)
T PF10456_consen 81 KIGQAFQSLSQAFELDQQQASMPLTNALKHTGDTYEEIGDLFAEQ 125 (237)
T ss_dssp HHHHHHHHHHHHHTTS--SSHCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567766666655542 123678999999999999999874443
No 186
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=54.03 E-value=2.3e+02 Score=28.03 Aligned_cols=101 Identities=19% Similarity=0.173 Sum_probs=59.4
Q ss_pred CCccccchHHhh--hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCC---CCCchhhHHHHHHHHhhccCCCCCCChHH
Q 017347 34 SDNVVTDEAELH--QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGS---KQVEIGTKLSEDSRKYGSDNTCTSGNTLS 108 (373)
Q Consensus 34 ~~~~~~~e~e~~--~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~---~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g 108 (373)
.|++--.|+++. |.+--|-+..-+...+...|+|.+.++-- -.+ +-.|- -+-.+-.++..+|.
T Consensus 26 TDdIN~~E~~Le~ar~~Fretqv~~t~kl~el~Kk~~k~I~ks--rpf~elk~~er--~~r~e~QkAa~~Fe-------- 93 (426)
T KOG2008|consen 26 TDDINRRETELEDARQKFRETQVEATVKLDELVKKIGKAIEKS--RPFWELKRVER--QARLEAQKAAQDFE-------- 93 (426)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHH--HHHHHHHHHHHHHH--------
Confidence 344444555554 55555555555666666677777776631 111 11222 34556666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcC
Q 017347 109 KAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG 146 (373)
Q Consensus 109 ~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~ 146 (373)
+|--.++-|..++.-++..+..+=..+|..-+..+|+.
T Consensus 94 Rat~vl~~AkeqVsl~~~sL~~~~~~~~~~~~~evlnh 131 (426)
T KOG2008|consen 94 RATEVLRAAKEQVSLAEQSLLEDDKRQFDSAWQEVLNH 131 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHH
Confidence 67777777777777777777766666666666666553
No 187
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=53.80 E-value=3e+02 Score=29.29 Aligned_cols=132 Identities=13% Similarity=0.173 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 017347 106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPG 185 (373)
Q Consensus 106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~ 185 (373)
-|-+|--.+..+...|..+..++...... |+-|...-+. .=..+.+++.+|+.+|+.+...|..|-.--
T Consensus 95 rf~ka~~~i~~~~~~l~~~e~~i~~i~~~--l~~L~~~e~~-nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~-------- 163 (560)
T PF06160_consen 95 RFKKAKQAIKEIEEQLDEIEEDIKEILDE--LDELLESEEK-NREEIEELKEKYRELRKELLAHSFSYGPAI-------- 163 (560)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhchhH--------
Confidence 46677777777777777777766543322 3333332221 233455888999999999988888772211
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 186 NPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQ 253 (373)
Q Consensus 186 ~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~ 253 (373)
+.++..|...+.+|++-.+.+.. |+.....-.-.....+ +..|...++.--.++..|...+.+
T Consensus 164 -~~Le~~L~~ie~~F~~f~~lt~~-GD~~~A~eil~~l~~~---~~~l~~~~e~IP~l~~~l~~~~P~ 226 (560)
T PF06160_consen 164 -EELEKQLENIEEEFSEFEELTEN-GDYLEAREILEKLKEE---TDELEEIMEDIPKLYKELQKEFPD 226 (560)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHhHH
Confidence 12344677777777666554222 2222222211111121 556666666666666655554433
No 188
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.47 E-value=49 Score=30.91 Aligned_cols=17 Identities=47% Similarity=0.638 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 017347 2 EAIRKQATKLREQVARQ 18 (373)
Q Consensus 2 ~~~~~~~~~~~~~~a~~ 18 (373)
|+|||||-+|-.|+--.
T Consensus 8 e~LRkqArslE~~ld~k 24 (231)
T KOG3208|consen 8 EALRKQARSLENQLDSK 24 (231)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 79999999999888665
No 189
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=51.18 E-value=1.9e+02 Score=26.31 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=28.2
Q ss_pred HHHHHHHhhccCCCCCCChHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh
Q 017347 88 LSEDSRKYGSDNTCTSGNTLSKAALS--YGRARAQMEKERGNLLKALGTQVAEPLRAMV 144 (373)
Q Consensus 88 Lg~~m~~~g~e~~~~~~s~~g~al~~--~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~ 144 (373)
||.++..+|.-+. .+|..=.. ++++...++.+-+.+.......-..=...|.
T Consensus 57 l~~~~~e~~~~~~-----~la~~E~~~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~ 110 (236)
T PF09325_consen 57 LASALAEFGSSFS-----QLAKSEEEKSLSEALSQLAEAFEKISELLEEQANQEEETLG 110 (236)
T ss_pred HHHHHHHHHHHHH-----HhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 5666666665554 23332222 5667777777777666655554443333343
No 190
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=50.44 E-value=4.3e+02 Score=30.07 Aligned_cols=100 Identities=22% Similarity=0.376 Sum_probs=59.5
Q ss_pred HHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 017347 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (373)
Q Consensus 87 ~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~l 166 (373)
.|-..|-+-|.+.. ..|.| .|-+-..+-...++.++. ||.+.. +-|...+++.+++
T Consensus 350 ILKaEmeekG~~~~--~~ss~-----qfkqlEqqN~rLKdalVr---------LRDlsA--------~ek~d~qK~~kel 405 (1243)
T KOG0971|consen 350 ILKAEMEEKGSDGQ--AASSY-----QFKQLEQQNARLKDALVR---------LRDLSA--------SEKQDHQKLQKEL 405 (1243)
T ss_pred HHHHHHHhcCCCCc--ccchH-----HHHHHHHHHHHHHHHHHH---------HHhcch--------HHHHHHHHHHHHH
Confidence 37778877776654 44444 333334444444444433 333322 4566778888899
Q ss_pred HHHHHHH---HHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Q 017347 167 EAQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMA-ILGKEAAAAMA 219 (373)
Q Consensus 167 e~rrld~---k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~-~L~kea~~~m~ 219 (373)
|.++-++ ++-+.+. ..++.+||.++.+.+|..+ .||.|+.-.++
T Consensus 406 E~k~sE~~eL~r~kE~L---------sr~~d~aEs~iadlkEQVDAAlGAE~MV~qL 453 (1243)
T KOG0971|consen 406 EKKNSELEELRRQKERL---------SRELDQAESTIADLKEQVDAALGAEEMVEQL 453 (1243)
T ss_pred HHHhhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Confidence 9888777 2223232 2378889988888887743 67777665554
No 191
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=50.26 E-value=2.4e+02 Score=27.08 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhhhhH---HHHHHhcC
Q 017347 123 KERGNLLKALGTQVAE---PLRAMVLG 146 (373)
Q Consensus 123 ~~~~~~~~~~~~~fl~---PL~~~~~~ 146 (373)
..|..+....+..|+. -|+.|++|
T Consensus 16 ~ywk~l~~~ykq~f~~~reEl~EFQeg 42 (333)
T KOG1853|consen 16 QYWKLLHHEYKQHFLQMREELNEFQEG 42 (333)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 4555666666666654 45566665
No 192
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=47.01 E-value=3.7 Score=43.57 Aligned_cols=142 Identities=20% Similarity=0.206 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhccC-C
Q 017347 107 LSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKR-QAKVRET-P 184 (373)
Q Consensus 107 ~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r-~~K~~e~-~ 184 (373)
.|+++.-+|.+..+++..-..+..........||+.++++ .+.+++..+++|.+....+..-++.+... +.-.... .
T Consensus 2 ~~~~~~~~~~~~~~~a~~~~~~~~~~e~~~~~pl~~~~e~-~l~~~~~~ek~~~~r~~~~~~~~~~~~~~~~s~~~~~~~ 80 (577)
T KOG4270|consen 2 LQKALSGCGSAENQAATELIQKELFVEIKVVFPLRKIIEV-ELPNIRKEEKNLQRRVSDMDSEQLRLFQAQKSSGEEGLF 80 (577)
T ss_pred chhhcccCcchhhhhhhccccceeeccccccCcccchhhh-hhhHHHHHHHHHHhhhhhcchhhhhhhhhhhhhhhcccc
Confidence 3577788888899988888888888888999999999998 88888854554555443333333333111 1110110 0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 017347 185 GNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG 256 (373)
Q Consensus 185 ~~~~~~~eL~~ae~K~~e~~e~~~~L~kea~~~m~~~---~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~ 256 (373)
.-+ ...+....+..+++......-.+.-...|... +.+. + .|...++.+.+||++.......+-.
T Consensus 81 ~~~--~~~~~~~~~e~e~~~~kie~~~d~~~~~~~~f~~~~~~~----~-f~~~~~e~q~~~~rrals~~~~vfg 148 (577)
T KOG4270|consen 81 RLP--GAKIDTLKEEEEECGMKIEQPTDQRHADHVTFDRKEGEY----L-FLGLPVEFQPDYHRRALSASETVFG 148 (577)
T ss_pred ccC--cchhhhhhchHHhhcCccccCcchhhhhhhhhhhhcchh----h-hccchhhhccccccccccchhhhhc
Confidence 000 01222222223333222222222234444332 2333 4 6777788888898887776555444
No 193
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=44.96 E-value=3e+02 Score=26.65 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=33.6
Q ss_pred HHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017347 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGT 134 (373)
Q Consensus 87 ~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~ 134 (373)
..+..+...|... |..++-.+-++|--...|++.+..|...+.+
T Consensus 82 ~~A~~L~~WG~~e----dddl~DIsDklgvLl~e~ge~e~~~a~~~d~ 125 (271)
T PF13805_consen 82 AAAKQLSEWGEQE----DDDLSDISDKLGVLLYEIGELEDQYADRLDQ 125 (271)
T ss_dssp HHHHHHHHHHTTS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577778888664 3468888899999999999998888876443
No 194
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=43.93 E-value=1.5e+02 Score=29.18 Aligned_cols=86 Identities=15% Similarity=0.210 Sum_probs=48.6
Q ss_pred HHHhcCCCCCCCCccccchHHhhhhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHH--HHHHH-hhccC
Q 017347 23 FKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLS--EDSRK-YGSDN 99 (373)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg--~~m~~-~g~e~ 99 (373)
.-||-++.+|+...+..|-. +-.||+= .+.+-.-.-+|++.+=-+++| +|..-. +|+ ..|-+ -|..-
T Consensus 8 a~Q~~sEK~ggae~TkLdDd----F~eme~~---vdvt~~~v~~i~~~tteylqp-npa~ra--kl~~~n~lsKvrG~~k 77 (366)
T KOG1118|consen 8 ASQWTSEKVGGAEGTKLDDD----FLEMEKE---VDVTSKGVTKILAKTTEYLQP-NPASRA--KLAMLNTLSKVRGQVK 77 (366)
T ss_pred HHHHhccccccccCCcCChH----HHHHHHh---HHHHHHHHHHHHHhhHHhcCC-Chhhhh--HHHHHHHHHHhccccc
Confidence 46898899988666664431 3334433 344433456777777677876 666543 444 22333 23332
Q ss_pred C-C--CCCChHHHHHHHHHHHH
Q 017347 100 T-C--TSGNTLSKAALSYGRAR 118 (373)
Q Consensus 100 ~-~--~~~s~~g~al~~~g~a~ 118 (373)
+ + .+...+|.+.+++|...
T Consensus 78 ~~~ypq~e~~Lg~~mik~gkeL 99 (366)
T KOG1118|consen 78 EKGYPQTEGLLGDVMIKHGKEL 99 (366)
T ss_pred CCCCccchhHHHHHHHHHHHhc
Confidence 2 1 12235899999887654
No 195
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=43.77 E-value=3e+02 Score=26.38 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHhc
Q 017347 116 RARAQMEKERGNLLKALGTQVAEPLRAMVL 145 (373)
Q Consensus 116 ~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~ 145 (373)
.--..++..+..+..++..++++||..+..
T Consensus 77 ~qt~~~A~~~~~~ae~l~~~i~~~l~~l~~ 106 (264)
T cd07654 77 EGLDAVAQSRQNRCEAYRRYISEPAKTGRS 106 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 335777888888888888888888877764
No 196
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=36.27 E-value=3.8e+02 Score=25.39 Aligned_cols=92 Identities=12% Similarity=0.117 Sum_probs=64.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH-----HHHh
Q 017347 103 SGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEV-----SKRQ 177 (373)
Q Consensus 103 ~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~-----k~r~ 177 (373)
.+|+.+++.-.+=.--..|++....+...+....++-|..++.. .+.++|.|....+.+...-.+. .+-+
T Consensus 63 ~~s~i~~sW~~il~QTE~isk~~~~~Aeeln~~~~~kLs~L~~~-----k~~~rK~~~~~~q~i~~e~~~~t~~eveK~K 137 (237)
T cd07685 63 LSSPISQSWAVLVSQTETLSQVLRKHAEDLNAGPLSKLSLLIRD-----KQQLRKTFSEQWQLLKQEYTKTTQQDIEKLK 137 (237)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788889888888888899999999999999988888877742 4455666766666665433332 2222
Q ss_pred hhhccCCCCcchHHHHHHHHHHHHHHHH
Q 017347 178 AKVRETPGNPDLALKLDAAEVKLHDLKS 205 (373)
Q Consensus 178 ~K~~e~~~~~~~~~eL~~ae~K~~e~~e 205 (373)
...+ ++|.....|..||+++..
T Consensus 138 k~Y~------~~c~~~e~AR~K~ekas~ 159 (237)
T cd07685 138 SQYR------SLAKDSAQAKRKYQEASK 159 (237)
T ss_pred HHHH------HHHHHHHHHHHHHHhccc
Confidence 2222 347788888899888743
No 197
>PF08103 Antimicrobial_8: Uperin family; InterPro: IPR012527 This family consists of the uperin family of antimicrobial peptides. Uperin is a wide-spectrum antibiotic peptide isolated from the Australian toadlet, Uperoleia mjobergii. Being only 17 amino acid residues long, it is smaller than most other wide-spectrum antibiotic peptides isolated from amphibians. Uperin adopts a well-defined amphipathic alpha-helix with distinct hydrophilic and hydrophobic faces [].; GO: 0005576 extracellular region
Probab=35.98 E-value=33 Score=18.80 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHH
Q 017347 2 EAIRKQATKLRE 13 (373)
Q Consensus 2 ~~~~~~~~~~~~ 13 (373)
|+|||-+|.+|.
T Consensus 4 d~~rKivs~iKN 15 (17)
T PF08103_consen 4 DAIRKIVSVIKN 15 (17)
T ss_pred HHHHHHHHHHHh
Confidence 789999998874
No 198
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=35.84 E-value=3.6e+02 Score=25.03 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 017347 154 HLAQRYDRMRQEAE 167 (373)
Q Consensus 154 ~~k~~y~~~r~~le 167 (373)
+.+..||++|.+++
T Consensus 120 ~KllDYD~~~~k~~ 133 (224)
T cd07591 120 HKLLDYDAARAKVR 133 (224)
T ss_pred hhHhhHHHHHHHHH
Confidence 44445555555554
No 199
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=35.63 E-value=3.6e+02 Score=24.97 Aligned_cols=28 Identities=7% Similarity=-0.108 Sum_probs=17.4
Q ss_pred HHHHHHHHhhccCCCCCCChHHHHHHHHH
Q 017347 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYG 115 (373)
Q Consensus 87 ~Lg~~m~~~g~e~~~~~~s~~g~al~~~g 115 (373)
+++..|+.+|.++. .....|..+|-.||
T Consensus 23 K~c~~li~A~k~~~-~a~~~Fa~sL~~f~ 50 (207)
T cd07634 23 KDGSLLIGALRNLS-MAVQKFSQSLQDFQ 50 (207)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 56777777777663 23345666666665
No 200
>cd07608 BAR_ArfGAP_fungi The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized fungal Arf GAP proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of uncharacterized fungal proteins containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and an Arf GTPase Activating Protein (GAP) domain. These proteins may play roles in Arf-mediated functions involving membrane dynamics. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.32 E-value=3.6e+02 Score=24.75 Aligned_cols=167 Identities=12% Similarity=0.103 Sum_probs=87.8
Q ss_pred HHHHhhhhhhHHHHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 017347 53 LYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALS-YGRARAQMEKERGNLLKA 131 (373)
Q Consensus 53 l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~-~g~a~~~l~~~~~~~~~~ 131 (373)
|-..|..++.+.|++.++.+.+... .-+.- ..-+-..+...+...+ +..+|-. |-.....+......-+..
T Consensus 6 le~kt~~mr~~~Kkl~kr~~~~~ea-~~~~~-~~~f~~ll~~~~~~~~------~~~al~~yf~~~~~~~~~~~~~~~~~ 77 (192)
T cd07608 6 LERKTRLLRSYLKRLIKRIVKLIEA-QDQLV-DLEFNELLSEAKFKND------FNVALDSYFDPFLLNLAFFLRDVCQD 77 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHhhcccc------ccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444445555666666655544321 00111 1123333344444332 2234433 334456666666677778
Q ss_pred HhhhhhHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhhhccCCCCcchHHHHHHHHHHHHH
Q 017347 132 LGTQVAEPLRAMVL-GAPLDDARHLAQRYDRMRQEAEAQAIEV--------SKRQAKVRETPGNPDLALKLDAAEVKLHD 202 (373)
Q Consensus 132 ~~~~fl~PL~~~~~-~~~lk~~~~~k~~y~~~r~~le~rrld~--------k~r~~K~~e~~~~~~~~~eL~~ae~K~~e 202 (373)
+...+++|+..+-. . ++|.+...|++|+. .-=|| ..++.+. +.+.++..=+-.||=
T Consensus 78 lq~~~iep~~~~y~~~-dik~~~~kkK~FEe-------eSKdYYs~l~kYLsn~~~~k-------~~DSK~l~KRk~FEL 142 (192)
T cd07608 78 LQLKKIEPLLKIYSIN-DIKELSDKKKDFEE-------ESKDYYSWLSKYLSNESDKK-------RPDSKLLAKRKTFEL 142 (192)
T ss_pred HHHHHHhhhhhccccc-hHHHHHHHhhhHHH-------HhHHHHHHHHHHhccccccc-------CcchHHHHHHHHHHH
Confidence 88899999998887 5 88887765554443 33344 1222111 113466666666666
Q ss_pred HHHHHHHhhHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 203 LKSNMAILGKEAAAAMAAVE-SQQQRLTLQRLIAMVEAERTYHQRVLQ 249 (373)
Q Consensus 203 ~~e~~~~L~kea~~~m~~~~-~~~~~~~l~~L~~~veAql~Yh~q~~~ 249 (373)
.+=+ -..-|++.. .+-.+-.++.|..|...+-..|.....
T Consensus 143 ~RFD-------Y~~~mqdl~ggr~~qell~~L~kf~~~q~~~~~~~~~ 183 (192)
T cd07608 143 SRFD-------YLNYLQDLHGGRKEQELLSILTKFINQQYDSIALTSN 183 (192)
T ss_pred HHhh-------HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHhHhh
Confidence 6655 345555432 111122488888888886655554433
No 201
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=31.22 E-value=9.4e+02 Score=28.43 Aligned_cols=17 Identities=29% Similarity=0.180 Sum_probs=8.1
Q ss_pred HHHHHhHHHHHHhhhhh
Q 017347 249 QILDQLEGEMLSERQRI 265 (373)
Q Consensus 249 ~iL~~L~~eL~se~~~~ 265 (373)
.+|..|...+.+....|
T Consensus 1731 aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1731 AELAGLEKRVESVLDHI 1747 (1758)
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 34455555555543333
No 202
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=30.94 E-value=4.2e+02 Score=25.72 Aligned_cols=6 Identities=0% Similarity=0.141 Sum_probs=2.7
Q ss_pred HHHHHH
Q 017347 87 KLSEDS 92 (373)
Q Consensus 87 ~Lg~~m 92 (373)
+||+-|
T Consensus 54 ~i~~k~ 59 (338)
T KOG3647|consen 54 LIGDKI 59 (338)
T ss_pred HHHHHH
Confidence 344444
No 203
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=30.25 E-value=86 Score=33.68 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=40.2
Q ss_pred CCceEEEEeccCCCCCCCCccCCCCCEEEEEeec----CCCeEEEEeCC-----eeeEecC
Q 017347 304 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT----NNGWAEGECKG-----KAGWFPF 355 (373)
Q Consensus 304 ~~~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~----~~gW~~G~~~g-----~~G~fP~ 355 (373)
.+.++.+.-|.|+.+.+..|.|..||++.|+... ...|+-.+.+. .+|++|.
T Consensus 502 GDSFyIRtHFE~Eke~P~gL~FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPN 562 (1027)
T KOG3580|consen 502 GDSFYIRTHFECEKETPQGLAFTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPN 562 (1027)
T ss_pred CceeEEeeeeeecCCCCccccccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCC
Confidence 3456788889999999999999999999987753 23466666543 5799995
No 204
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=29.64 E-value=53 Score=33.16 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 017347 193 LDAAEVKLHDLKSNMAILGKEAAAAMAA 220 (373)
Q Consensus 193 L~~ae~K~~e~~e~~~~L~kea~~~m~~ 220 (373)
=..|++||.|..|.|..|..+-.+++.+
T Consensus 40 ~~~AeeKFKEI~eAYEVLsD~eKRa~YD 67 (371)
T COG0484 40 DKEAEEKFKEINEAYEVLSDPEKRAAYD 67 (371)
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHhh
Confidence 4579999999999999999999999976
No 205
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=29.14 E-value=1.3e+02 Score=24.54 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHH
Q 017347 166 AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKL 200 (373)
Q Consensus 166 le~rrld~k~r~~K~~e~~~~~~~~~eL~~ae~K~ 200 (373)
+=+||+||.+..-..-+ -.|..||.|+
T Consensus 72 ~l~RRiDYV~~Ni~tle--------Kql~~aE~kl 98 (99)
T PF13758_consen 72 VLSRRIDYVQQNIETLE--------KQLEAAENKL 98 (99)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHhc
Confidence 67899999555443222 2677777764
No 206
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=27.76 E-value=48 Score=33.16 Aligned_cols=43 Identities=30% Similarity=0.552 Sum_probs=31.8
Q ss_pred CCCCCccCCCCCEEEEEeecCCCeEEEEe--------CC---eeeEecCCC-eeec
Q 017347 318 ESDVELTLSVGDYVVVRKVTNNGWAEGEC--------KG---KAGWFPFGY-IERR 361 (373)
Q Consensus 318 ~~~~ELsl~~gd~I~V~~~~~~gW~~G~~--------~g---~~G~fP~~Y-ve~l 361 (373)
.++.-|+|.+||.|.+... -.+|..|+. ++ -+||||.+. ++..
T Consensus 329 ~ddprisL~p~d~i~~tr~-~~~wlyg~~~l~e~~~E~~~rkiRgwfP~~~a~e~~ 383 (414)
T KOG1314|consen 329 TDDPRISLPPGDGIKATRG-FNHWLYGEEILSEMFNESRERKIRGWFPRNCAVEKC 383 (414)
T ss_pred CCCcccccCCCcceeeeee-eecccchhhhhhHHHhhcchhhhccccccccccccc
Confidence 4566799999999988765 568999832 12 479999988 6554
No 207
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=27.66 E-value=4.6e+02 Score=26.68 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017347 190 ALKLDAAEVKLHDLKSN 206 (373)
Q Consensus 190 ~~eL~~ae~K~~e~~e~ 206 (373)
+.|-..||-||-.....
T Consensus 430 EeEKKkAEKKFIDIAAA 446 (504)
T KOG0624|consen 430 EEEKKKAEKKFIDIAAA 446 (504)
T ss_pred HHHHHHHHHhhhhHHHH
Confidence 56677888888776555
No 208
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=25.48 E-value=1.1e+02 Score=22.47 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=25.9
Q ss_pred CCCCCEEE--EEeecCCCeEEEEeCCeeeEecCCCeee
Q 017347 325 LSVGDYVV--VRKVTNNGWAEGECKGKAGWFPFGYIER 360 (373)
Q Consensus 325 l~~gd~I~--V~~~~~~gW~~G~~~g~~G~fP~~Yve~ 360 (373)
+..|+++. |.+..+.|+|---.+|..|++|.+.+..
T Consensus 2 ~~~G~iv~g~V~~v~~~g~~V~l~~~~~g~ip~~~l~~ 39 (74)
T PF00575_consen 2 LKEGDIVEGKVTSVEDFGVFVDLGNGIEGFIPISELSD 39 (74)
T ss_dssp SSTTSEEEEEEEEEETTEEEEEESTSSEEEEEGGGSSS
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCcEEEEEEeehhcC
Confidence 56788877 6666677766544469999999876653
No 209
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=24.95 E-value=3.8e+02 Score=24.75 Aligned_cols=92 Identities=15% Similarity=0.165 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcC-CCchHHHHHHHHHHHHHHHH--HHHHHHH--HHHhhhh
Q 017347 106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG-APLDDARHLAQRYDRMRQEA--EAQAIEV--SKRQAKV 180 (373)
Q Consensus 106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~-~~lk~~~~~k~~y~~~r~~l--e~rrld~--k~r~~K~ 180 (373)
.-|++|..-|+....+-.==.-|...+.+=.-.-+...+.. ..++-+| -+|+..|-.+ .++.||. .+.-.|.
T Consensus 63 ~t~KaL~~sg~qrl~~r~pl~~f~~~v~Tf~~rai~Dtl~Ti~~~E~aR---~EY~a~~~~mk~~s~eldP~~~~~l~kf 139 (204)
T cd07661 63 ATGKALSFSSQQRLALRVPLLRLYQEVETFRERAIADTLQTIQRMEKCR---TEYRAALLWMKSVSQELDPDTYKQLEKF 139 (204)
T ss_pred HHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cccHHHHHHHHHHhhhcCCccchhHHHH
Confidence 67788888877665542222233333332221111111110 0333344 3599999988 6666776 3333343
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHHHH
Q 017347 181 RETPGNPDLALKLDAAEVKLHDLKSN 206 (373)
Q Consensus 181 ~e~~~~~~~~~eL~~ae~K~~e~~e~ 206 (373)
+.. ....+.++.||+..+.+
T Consensus 140 r~a------Q~qvr~~K~kfdkLk~D 159 (204)
T cd07661 140 RKA------QAQVRSAKERFDKLKMD 159 (204)
T ss_pred HHH------HHHHHHHHHHHHHHhHH
Confidence 322 35899999999999876
No 210
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=24.88 E-value=5.9e+02 Score=24.03 Aligned_cols=123 Identities=14% Similarity=0.098 Sum_probs=59.0
Q ss_pred CCccccchHHhh-hhHHHHHHHHHhhhhhhHH------HHHhhhhcccccCCCCCCchhhHHHHHHHHhhccCCCCCCCh
Q 017347 34 SDNVVTDEAELH-QHQRLERLYISTRAGKHFQ------RDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNT 106 (373)
Q Consensus 34 ~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~~~------~~i~r~~e~~~~~~~~~~e~~~~Lg~~m~~~g~e~~~~~~s~ 106 (373)
+|++...|.+|. .+.-+++++..|...-..+ +++.+..++.+. ...++.++-||.+ ..||.=+- .
T Consensus 14 ~d~~~~lE~~~d~~k~~~~~~~k~~~~~lq~n~~~~~ekr~rk~p~~~Lg--~~M~~~g~~l~~~-s~lg~~L~-----~ 85 (244)
T cd07595 14 SDELLQIEKRVEAVKDACQNIHKKLISCLQGQSGEDKDKRLKKLPEYGLA--QSMLESSKELPDD-SLLGKVLK-----L 85 (244)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCCcHHHHhhhhccCcHHHHH--HHHHHHHHhcCCC-ChHHHHHH-----H
Confidence 677777787777 5777777777544321111 122222222221 1112332222211 11121111 4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 017347 107 LSKAALSYGRARAQMEK-ERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (373)
Q Consensus 107 ~g~al~~~g~a~~~l~~-~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~l 166 (373)
||.+..++|++...... +...|..-+..-.-.-|+.... .-|....+.-.||..|..+
T Consensus 86 ~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k--~RKkLe~~RLd~D~~k~r~ 144 (244)
T cd07595 86 CGEAQNTLARELVDHEMNVEEDVLSPLQNILEVEIPNIQK--QKKRLSKLVLDMDSARSRY 144 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhHHHHHHHHHH
Confidence 57777788887776655 7778877776543334444442 2222223333455544444
No 211
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=24.61 E-value=2.2e+02 Score=20.53 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=27.8
Q ss_pred HHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHH
Q 017347 129 LKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEV 173 (373)
Q Consensus 129 ~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~rrld~ 173 (373)
+...-..||.-|+.-++. --+++. .+.++|+. .|++||-++
T Consensus 5 ~~~~~d~yI~~Lk~kLd~-Kk~Eil~~ln~EY~k---iLk~r~~~l 46 (56)
T PF08112_consen 5 DKSTIDKYISILKSKLDE-KKSEILSNLNMEYEK---ILKQRRKEL 46 (56)
T ss_pred hhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 344556888888888874 556676 77777876 355566555
No 212
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=24.33 E-value=1.5e+02 Score=29.62 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=44.5
Q ss_pred cchHHhh--hhHHHHHHHHHhhhhhhHHHHHhhhhcccccCCC-CCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHH
Q 017347 39 TDEAELH--QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGS-KQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYG 115 (373)
Q Consensus 39 ~~e~e~~--~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~-~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g 115 (373)
+||-|+. --+||=.+|+.| |.|.|.|--..+...-.+- -++|| ++.+|++....- ..+.+-+|.--++
T Consensus 134 ~de~efa~~AlqqLl~IYQ~t---reW~KAId~A~~L~k~~~q~~~~eI----AqfyCELAq~~~--~~~~~d~A~~~l~ 204 (389)
T COG2956 134 VDEGEFAEGALQQLLNIYQAT---REWEKAIDVAERLVKLGGQTYRVEI----AQFYCELAQQAL--ASSDVDRARELLK 204 (389)
T ss_pred hcchhhhHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHcCCccchhHH----HHHHHHHHHHHh--hhhhHHHHHHHHH
Confidence 5666766 356777777765 5699988665554422222 23665 899999988766 5555655555554
Q ss_pred HHH
Q 017347 116 RAR 118 (373)
Q Consensus 116 ~a~ 118 (373)
.|.
T Consensus 205 kAl 207 (389)
T COG2956 205 KAL 207 (389)
T ss_pred HHH
Confidence 444
No 213
>PRK10869 recombination and repair protein; Provisional
Probab=24.06 E-value=8.9e+02 Score=25.74 Aligned_cols=25 Identities=20% Similarity=0.092 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 107 LSKAALSYGRARAQMEKERGNLLKA 131 (373)
Q Consensus 107 ~g~al~~~g~a~~~l~~~~~~~~~~ 131 (373)
|+..+-.+-++...++++..++...
T Consensus 263 ~~~~~~~l~~~~~~l~~~~~~l~~~ 287 (553)
T PRK10869 263 LSGVLDMLEEALIQIQEASDELRHY 287 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 214
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.85 E-value=8.1e+02 Score=25.61 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017347 154 HLAQRYDRMRQEAEAQAIEV 173 (373)
Q Consensus 154 ~~k~~y~~~r~~le~rrld~ 173 (373)
+++++++..|+-|....+-+
T Consensus 311 ~ltqqwed~R~pll~kkl~L 330 (521)
T KOG1937|consen 311 ELTQQWEDTRQPLLQKKLQL 330 (521)
T ss_pred HHHHHHHHHhhhHHHHHHHH
Confidence 55666666565554444443
No 215
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=23.68 E-value=5.9e+02 Score=23.55 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHH--
Q 017347 119 AQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAA-- 196 (373)
Q Consensus 119 ~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rrld~k~r~~K~~e~~~~~~~~~eL~~a-- 196 (373)
..+..+.+.++ .+...+-+||+..+-. |+++....-....+.-++-+.+.+||-+.+.+.. +|+..
T Consensus 68 ~~~~~v~e~~d-~~~~~l~~~l~~~Vl~-Pl~~~~s~f~~i~k~I~KR~~KllDYDr~r~~~~----------kL~~K~~ 135 (211)
T cd07588 68 EHLASIFEQLD-LLWNDLEEKLSDQVLG-PLTAYQSQFPEVKKRIAKRGRKLVDYDSARHNLE----------ALKAKKK 135 (211)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHH----------HHHhccc
Confidence 33344444444 4455588888877776 8777663333344555556677788844433321 23322
Q ss_pred --HHHHHHHHHHHHHhhHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 017347 197 --EVKLHDLKSNMAILGKEAAAAMAA--VESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSE 261 (373)
Q Consensus 197 --e~K~~e~~e~~~~L~kea~~~m~~--~~~~~~~~~l~~L~~~veAql~Yh~q~~~iL~~L~~eL~se 261 (373)
+.|+..+.+. ...+-.. ...++ ....|-.|++....|+..+-+.|-.++...-.+
T Consensus 136 kde~KL~kae~e-------l~~Ak~~Ye~lN~~---L~~ELP~L~~~ri~f~~p~F~sl~~~q~~F~~e 194 (211)
T cd07588 136 VDDQKLTKAEEE-------LQQAKKVYEELNTE---LHEELPALYDSRIAFYVDTLQSIFAAESVFHKE 194 (211)
T ss_pred ccHhhHHHHHHH-------HHHHHHHHHHHHHH---HHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444333 3322222 12222 366888888989999998888887777665544
No 216
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=23.67 E-value=64 Score=30.28 Aligned_cols=80 Identities=13% Similarity=0.261 Sum_probs=50.1
Q ss_pred CCCCchhhHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHH
Q 017347 79 SKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEK-ERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQ 157 (373)
Q Consensus 79 ~~~~e~~~~Lg~~m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~-~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~ 157 (373)
-..++.|+-||++ ..||.-+. .||.|+.++|+++..... +..+|+.-+..-...-|+.... .-|-...++-
T Consensus 71 ~~M~~~G~elg~d-S~~G~aL~-----~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~dik~i~k--~RKkLe~rRL 142 (223)
T cd07613 71 EAMLKFGRELGDE-CNFGPALG-----DVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQH--HLKKLEGRRL 142 (223)
T ss_pred HHHHHHHhhCCCC-ChHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 3446666556554 33555554 678999999999887665 8888888887755555554442 3333334455
Q ss_pred HHHHHHHHH
Q 017347 158 RYDRMRQEA 166 (373)
Q Consensus 158 ~y~~~r~~l 166 (373)
.||..++.+
T Consensus 143 d~D~~K~r~ 151 (223)
T cd07613 143 DFDYKKKRQ 151 (223)
T ss_pred hHHHHHHhC
Confidence 577655554
No 217
>cd07677 F-BAR_FCHSD2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 2 (FCHSD2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 2 (FCHSD2) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=23.31 E-value=6.7e+02 Score=24.10 Aligned_cols=140 Identities=19% Similarity=0.213 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcC--------------------CCchHHHHHHHHHHHHHHHHHHHHHHH
Q 017347 114 YGRARAQMEKERGNLLKALGTQVAEPLRAMVLG--------------------APLDDARHLAQRYDRMRQEAEAQAIEV 173 (373)
Q Consensus 114 ~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~--------------------~~lk~~~~~k~~y~~~r~~le~rrld~ 173 (373)
+=..-..++..+..+..++..++.+|++.+-.. .-+.|...-|+.|+..-+..++.|---
T Consensus 75 ~L~~Te~~A~~~~~~ae~l~~~~a~~~k~~r~~ke~~~Kk~~e~~~~lq~El~~~~~EL~KaKK~Y~~~cq~~e~~ReK~ 154 (260)
T cd07677 75 FLEGTMQVAQSRINICENYKNLISEPARTVRLYKEQQLKRCVDQLTKIQAELQETVKDLAKGKKKYFETEQMAHAVREKA 154 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 334456667777788888888888877532200 011122222444555555555433322
Q ss_pred HHHhhhhccCCCCcchHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 017347 174 SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMA----ILGKEAAAAMAAVESQQQRLTLQRLIAMVEA-ERTYHQRVL 248 (373)
Q Consensus 174 k~r~~K~~e~~~~~~~~~eL~~ae~K~~e~~e~~~----~L~kea~~~m~~~~~~~~~~~l~~L~~~veA-ql~Yh~q~~ 248 (373)
. -..|.+.. .+.....++.++.|+.+-...|. .-.|+-.-.|....+-....++..|..+++. -..||.+..
T Consensus 155 ~-~e~K~~~s--~~qs~~slqK~~~K~~~k~~e~n~k~~~ARNeYLl~L~aaNa~~~kYY~~DLp~l~~~~d~~~~~~~~ 231 (260)
T cd07677 155 D-IEAKSKLS--LFQSRISLQKASVKLKARRSECNSKATHARNDYLLTLAAANAHQDRYYQTDLVNIMKALDGNVYDHLK 231 (260)
T ss_pred H-HHHhcccc--cccccchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccHHHHHHHhcchHHHHHH
Confidence 0 00011011 11112245555556666655555 3344444344333333444556677777765 356777777
Q ss_pred HHHHHhHH
Q 017347 249 QILDQLEG 256 (373)
Q Consensus 249 ~iL~~L~~ 256 (373)
+.|.-|..
T Consensus 232 ~~l~~~~~ 239 (260)
T cd07677 232 DYLMAFSR 239 (260)
T ss_pred HHHHHHhH
Confidence 77765544
No 218
>PF15463 ECM11: Extracellular mutant protein 11
Probab=22.46 E-value=3.7e+02 Score=23.01 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHh
Q 017347 114 YGRARAQMEKERGNLLKALG-TQVAEPLRAMV 144 (373)
Q Consensus 114 ~g~a~~~l~~~~~~~~~~~~-~~fl~PL~~~~ 144 (373)
+.......+..++.|..++. ..|.+--..|+
T Consensus 51 l~~~~~~~~~~q~~~fs~ls~~eWe~~Gd~~l 82 (139)
T PF15463_consen 51 LEELFKLSEQEQEEFFSNLSFDEWEEAGDWFL 82 (139)
T ss_pred HHHHHhcChHHHHHHHhcCCHHHHHHHHHHHH
Confidence 55556667777765544443 33444333333
No 219
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=22.43 E-value=9.4e+02 Score=25.46 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH
Q 017347 110 AALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR 153 (373)
Q Consensus 110 al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~ 153 (373)
++-.++.+...+..+ |+..+ ..+.+.|..... .++|+.
T Consensus 249 ~~~~l~~~~~~l~~~---~d~~~-~~~~~~l~~~~~--~l~d~~ 286 (563)
T TIGR00634 249 LLEGLGEAQLALASV---IDGSL-RELAEQVGNALT--EVEEAT 286 (563)
T ss_pred HHHHHHHHHHHHHHh---hhHhH-HHHHHHHHHHHH--HHHHHH
Confidence 455555566655555 33222 344444544443 455544
No 220
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=22.37 E-value=7.5e+02 Score=24.30 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=43.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHH
Q 017347 103 SGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEA 166 (373)
Q Consensus 103 ~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~l 166 (373)
.+..||.|.-++-.|-.+|+.++.+....|...+-.-+...+. +=++.. .+..+|+|-.+++
T Consensus 11 Q~~~F~aahaqm~sav~qL~~~r~~teelIr~rVrq~V~hVqa--qEreLLe~v~~rYqR~y~em 73 (324)
T PF12126_consen 11 QDGAFGAAHAQMRSAVSQLGRARADTEELIRARVRQVVAHVQA--QERELLEAVEARYQRDYEEM 73 (324)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999999988888876555444332 222222 4456666666665
No 221
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=21.98 E-value=3.6e+02 Score=20.39 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHH
Q 017347 116 RARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQA 170 (373)
Q Consensus 116 ~a~~~l~~~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~~~k~~y~~~r~~le~rr 170 (373)
...+.|..+++.+...+..-+.+ +..|+.+.+.++++++..|
T Consensus 26 ~~~k~L~~ERd~~~~~l~~a~~e-------------~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 26 IENKRLRRERDSAERQLGDAYEE-------------NNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhh
Confidence 34555666666666666554433 5566677777777776654
No 222
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=21.84 E-value=85 Score=33.42 Aligned_cols=35 Identities=23% Similarity=0.545 Sum_probs=28.7
Q ss_pred CCCEEEEEeec-----CCCeEEEEe-CCeeeEecCCCeeec
Q 017347 327 VGDYVVVRKVT-----NNGWAEGEC-KGKAGWFPFGYIERR 361 (373)
Q Consensus 327 ~gd~I~V~~~~-----~~gW~~G~~-~g~~G~fP~~Yve~l 361 (373)
=|++.+|.+.. +.+|..... +|..||+-..||+.+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (549)
T PRK13545 374 FGDIFTISDSNKNEKKDVEWIQITLSNGEIGWISTKFIEPF 414 (549)
T ss_pred cCceEEEcccccccccCcceEEEEecCCccceeeeeeeeec
Confidence 37888887753 558999888 999999999999875
No 223
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.70 E-value=9.3e+02 Score=25.13 Aligned_cols=54 Identities=22% Similarity=0.233 Sum_probs=45.8
Q ss_pred ceEEEEeccCCCCCCCCccCCCCCEEEEEeec-CCCeEEEEeCCeeeEecCCCee
Q 017347 306 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECKGKAGWFPFGYIE 359 (373)
Q Consensus 306 ~~~~~alydf~a~~~~ELsl~~gd~I~V~~~~-~~gW~~G~~~g~~G~fP~~Yve 359 (373)
...++++|||.+.+.++|+|..||+|.|++.. .+.||+|++.|..|-+|-+|+.
T Consensus 400 ~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~ 454 (460)
T KOG3771|consen 400 LYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFP 454 (460)
T ss_pred ccceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhccccccccee
Confidence 45789999999999999999999999998864 5579999998877777776664
No 224
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=21.68 E-value=1.8e+02 Score=21.89 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=23.0
Q ss_pred CCCCCEEE--EEeecCCCeEEEEeCCeeeEecC
Q 017347 325 LSVGDYVV--VRKVTNNGWAEGECKGKAGWFPF 355 (373)
Q Consensus 325 l~~gd~I~--V~~~~~~gW~~G~~~g~~G~fP~ 355 (373)
+.+|+++. |....+.|+|---..|..|++|.
T Consensus 1 ~k~G~~V~g~V~~i~~~G~fV~l~~~v~G~v~~ 33 (74)
T cd05705 1 IKEGQLLRGYVSSVTKQGVFFRLSSSIVGRVLF 33 (74)
T ss_pred CCCCCEEEEEEEEEeCCcEEEEeCCCCEEEEEH
Confidence 46788877 66777888874433789999993
No 225
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=21.64 E-value=2.5e+02 Score=27.37 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=32.8
Q ss_pred HHHhhccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 017347 92 SRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRA 142 (373)
Q Consensus 92 m~~~g~e~~~~~~s~~g~al~~~g~a~~~l~~~~~~~~~~~~~~fl~PL~~ 142 (373)
--.|..-+. + ..|++++-.+.++.-.+-....++...+-..+--|-|.
T Consensus 225 e~~~~~~~~--S-~ef~~~~g~~~~a~m~~r~~~~~~~e~~L~~l~lPTr~ 272 (293)
T PF09712_consen 225 EEAYEELFR--S-EEFAQAYGQLVNALMDLRKQQQEVVEEYLRSLNLPTRS 272 (293)
T ss_pred HHHHHHHHC--C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 334455453 2 36888888888888888777777777766666666554
No 226
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=21.00 E-value=1.2e+03 Score=25.97 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017347 230 LQRLIAMVEAERTYHQRVLQILDQLEGEMLS 260 (373)
Q Consensus 230 l~~L~~~veAql~Yh~q~~~iL~~L~~eL~s 260 (373)
|..+.++++.+-+|+..+...+..|+.....
T Consensus 525 I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a 555 (961)
T KOG4673|consen 525 IEKHQAELTRQKDYYSNSRALAAALEAQALA 555 (961)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7788888888888888887777777776654
No 227
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=20.90 E-value=1.3e+02 Score=30.31 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccchHHhhhhHHHHHHHHHhhhhhhHHHHHhhhhccccc-----
Q 017347 2 EAIRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIV----- 76 (373)
Q Consensus 2 ~~~~~~~~~~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~----- 76 (373)
||+|+-|..++.-=-+-=+.+|+++-.+=+ .|.+| +.||..||..+ .-++|+|-+|-|-.
T Consensus 286 ~AmkavAeA~~nRSLkdF~~AL~~yk~eL~--~D~iv--------r~Hl~~Lyd~l-----LEknl~riIEPyS~Vei~h 350 (411)
T KOG1463|consen 286 DAMKAVAEAFGNRSLKDFEKALADYKKELA--EDPIV--------RSHLQSLYDNL-----LEKNLCRIIEPYSRVEISH 350 (411)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHHHh--cChHH--------HHHHHHHHHHH-----HHHhHHHHcCchhhhhHHH
Confidence 677777766665555555667777763332 45555 88999999886 67899999995421
Q ss_pred ------CCCCCCchhhHHHHHHHH
Q 017347 77 ------TGSKQVEIGTKLSEDSRK 94 (373)
Q Consensus 77 ------~~~~~~e~~~~Lg~~m~~ 94 (373)
...+++|. +|++-.+.
T Consensus 351 IA~~IGl~~~~VEk--KLsqMILD 372 (411)
T KOG1463|consen 351 IAEVIGLDVPQVEK--KLSQMILD 372 (411)
T ss_pred HHHHHCCCcHHHHH--HHHHHHHH
Confidence 12466776 77775543
No 228
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=20.37 E-value=1.1e+03 Score=25.46 Aligned_cols=26 Identities=23% Similarity=0.458 Sum_probs=16.7
Q ss_pred CchHHH-HHHHHHHHHHHHHHHHHHHH
Q 017347 148 PLDDAR-HLAQRYDRMRQEAEAQAIEV 173 (373)
Q Consensus 148 ~lk~~~-~~k~~y~~~r~~le~rrld~ 173 (373)
+|+..+ -+..+|++++....++..+.
T Consensus 416 qWe~~R~pL~~e~r~lk~~~~~~~~e~ 442 (594)
T PF05667_consen 416 QWEKHRAPLIEEYRRLKEKASNRESES 442 (594)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhcchHH
Confidence 566666 66666777766665555555
No 229
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=20.00 E-value=6e+02 Score=22.27 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHH
Q 017347 107 LSKAALSYGRARAQMEK-ERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEA 168 (373)
Q Consensus 107 ~g~al~~~g~a~~~l~~-~~~~~~~~~~~~fl~PL~~~~~~~~lk~~~-~~k~~y~~~r~~le~ 168 (373)
||.+.-.++.+...+.. ++..++.-+. .|+.-+..... ...-+ ...-.||+.+.+++.
T Consensus 97 ~~~~~~~i~~~~~~~~~~~~~~vi~pl~-~~~~~~~~i~~---~~kkr~~~~ldyd~~~~k~~k 156 (229)
T PF03114_consen 97 FGEAMQEIEEARKELESQIESTVIDPLK-EFLKEFKEIKK---LIKKREKKRLDYDSARSKLEK 156 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554444 3555555554 44455555442 22223 445566776666653
Done!