Query 017348
Match_columns 373
No_of_seqs 286 out of 788
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 12:59:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017348.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017348hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.6 2.5E-16 8.4E-21 121.3 4.9 54 222-278 7-60 (63)
2 1gnf_A Transcription factor GA 99.6 2.5E-16 8.4E-21 114.3 4.4 43 222-267 4-46 (46)
3 2vut_I AREA, nitrogen regulato 99.6 2.6E-16 8.8E-21 112.7 3.8 41 223-266 2-42 (43)
4 4gat_A Nitrogen regulatory pro 99.6 7E-16 2.4E-20 119.7 4.4 52 222-276 9-60 (66)
5 2kae_A GATA-type transcription 99.4 3.1E-14 1.1E-18 111.9 3.0 45 222-268 8-52 (71)
6 4hc9_A Trans-acting T-cell-spe 99.4 2E-13 6.8E-18 116.1 4.5 53 222-277 59-111 (115)
7 4hc9_A Trans-acting T-cell-spe 99.2 7.8E-12 2.7E-16 106.3 5.4 47 222-271 5-51 (115)
8 3ogk_Q JAZ1 incomplete degron 95.8 0.0029 9.9E-08 39.2 1.3 19 153-171 1-19 (22)
9 3ogl_Q JAZ1 incomplete degron 95.4 0.0077 2.6E-07 36.9 2.0 17 152-168 5-21 (21)
10 1pft_A TFIIB, PFTFIIBN; N-term 37.6 4.4 0.00015 28.5 -1.1 32 223-259 6-37 (50)
11 1dl6_A Transcription factor II 37.3 9.2 0.00031 28.1 0.6 32 223-259 12-43 (58)
12 2pk2_A Cyclin-T1, protein TAT; 37.1 7.2 0.00024 38.1 0.0 9 222-230 314-322 (358)
13 2j9u_B VPS36, vacuolar protein 36.9 6.1 0.00021 31.2 -0.4 34 221-255 16-49 (76)
14 2yrk_A Zinc finger homeobox pr 33.8 3.3 0.00011 30.9 -2.3 7 224-230 15-21 (55)
15 2owa_A Arfgap-like finger doma 31.9 33 0.0011 29.6 3.3 37 222-262 36-72 (138)
16 2ctu_A Zinc finger protein 483 31.1 16 0.00054 25.2 1.0 40 222-264 18-57 (73)
17 2iqj_A Stromal membrane-associ 28.3 36 0.0012 29.0 3.0 37 222-262 27-63 (134)
18 2ds5_A CLPX, ATP-dependent CLP 28.2 31 0.001 25.0 2.1 31 223-255 12-42 (51)
19 2crw_A ARF GAP 3, ADP-ribosyla 27.9 37 0.0013 29.6 3.0 37 222-262 29-65 (149)
20 3cw2_K Translation initiation 27.8 20 0.0007 30.9 1.3 31 223-256 104-134 (139)
21 1ovx_A ATP-dependent CLP prote 27.0 31 0.0011 26.5 2.1 32 223-256 19-50 (67)
22 2crr_A Stromal membrane-associ 25.8 52 0.0018 28.3 3.5 37 222-262 29-65 (141)
23 3sub_A ADP-ribosylation factor 24.7 50 0.0017 29.4 3.3 37 222-262 22-58 (163)
24 3cng_A Nudix hydrolase; struct 24.0 23 0.00078 30.3 0.9 31 222-254 3-33 (189)
25 2olm_A Nucleoporin-like protei 24.0 45 0.0015 28.7 2.8 36 222-261 25-60 (140)
26 1w7p_D VPS36P, YLR417W; ESCRT- 23.8 17 0.00057 38.2 0.0 38 219-257 114-151 (566)
27 1nee_A EIF-2-beta, probable tr 22.5 21 0.00073 30.7 0.4 29 223-254 103-131 (138)
28 2lvu_A Zinc finger and BTB dom 28.1 18 0.00063 19.9 0.0 17 247-263 3-19 (26)
29 2yrc_A Protein transport prote 22.2 21 0.00073 26.4 0.3 32 222-255 9-42 (59)
30 2d74_B Translation initiation 22.1 24 0.0008 30.9 0.6 30 223-255 105-134 (148)
31 3dwd_A ADP-ribosylation factor 21.8 55 0.0019 28.6 2.9 36 222-261 38-73 (147)
32 1pqv_S STP-alpha, transcriptio 21.3 20 0.00069 34.4 0.0 36 222-257 268-307 (309)
33 2p57_A GTPase-activating prote 21.3 44 0.0015 29.1 2.2 37 222-262 37-73 (144)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.62 E-value=2.5e-16 Score=121.26 Aligned_cols=54 Identities=26% Similarity=0.529 Sum_probs=46.0
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCCCCCCCCcCCCC
Q 017348 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLSMDQLE 278 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~~sk~~~~~~~~~~~ 278 (373)
...|++|+++ .||+||+||+|+ +|||||||+|++++..|+++..+..+..+...
T Consensus 7 ~~~C~~C~tt--~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk 60 (63)
T 3dfx_A 7 GTSCANCQTT--TTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRNRK 60 (63)
T ss_dssp TCCCTTTCCS--CCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC--
T ss_pred CCcCCCcCCC--CCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCccccccCC
Confidence 4679999995 699999999997 99999999999999999998877666655543
No 2
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.62 E-value=2.5e-16 Score=114.35 Aligned_cols=43 Identities=44% Similarity=0.852 Sum_probs=39.5
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCC
Q 017348 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSK 267 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~~sk 267 (373)
...|++|+++ .||+||+||.|+ +|||||||+|++++++|+++|
T Consensus 4 ~~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~ 46 (46)
T 1gnf_A 4 ARECVNCGAT--ATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR 46 (46)
T ss_dssp SCCCTTTCCC--CCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred CCCCCCcCCC--CCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence 3579999995 699999999996 999999999999999999875
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.61 E-value=2.6e-16 Score=112.73 Aligned_cols=41 Identities=46% Similarity=0.907 Sum_probs=38.0
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCC
Q 017348 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLS 266 (373)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~~s 266 (373)
..|++|+++ .||+||+||+|+ +|||||||+|++++++|+++
T Consensus 2 ~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~ 42 (43)
T 2vut_I 2 TTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLS 42 (43)
T ss_dssp CCCSSSCCC--CCSCCEECTTSC-EECHHHHHHHHHHSSCCCCC
T ss_pred CcCCccCCC--CCCccccCCCCC-cccHHHHHHHHHhCCCCCCC
Confidence 479999994 699999999997 99999999999999999975
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.58 E-value=7e-16 Score=119.73 Aligned_cols=52 Identities=37% Similarity=0.680 Sum_probs=45.0
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCCCCCCCCcCC
Q 017348 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLSMDQ 276 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~~sk~~~~~~~~~ 276 (373)
...|++|+++ .||+||+||.|. +|||||||+|++++++|++++....|..+.
T Consensus 9 ~~~C~~C~t~--~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~ 60 (66)
T 4gat_A 9 PTTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKRN 60 (66)
T ss_dssp SCCCTTTCCC--CCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCCC
T ss_pred CCCCCCCCCC--CCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhccccccccc
Confidence 4679999994 699999999996 999999999999999999988765555443
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.44 E-value=3.1e-14 Score=111.90 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=38.2
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCCC
Q 017348 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKG 268 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~~sk~ 268 (373)
...|+||+++ .||+||+||.+..+|||||||+|++++++|+++..
T Consensus 8 ~~~C~nC~tt--~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~ 52 (71)
T 2kae_A 8 SFQCSNCSVT--ETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAV 52 (71)
T ss_dssp CCCCSSSCCS--CCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHH
T ss_pred CCcCCccCCC--CCCccccCCCCCCccchHHHHHHHHhCCCCCcccc
Confidence 4689999995 69999995444449999999999999999997654
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.38 E-value=2e-13 Score=116.08 Aligned_cols=53 Identities=26% Similarity=0.533 Sum_probs=46.1
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCCCCCCCCcCCC
Q 017348 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLSMDQL 277 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~~sk~~~~~~~~~~ 277 (373)
...|++|+++ .||+||+||+| .+|||||||||++++..|+++..+..|..+..
T Consensus 59 ~~~C~~C~t~--~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r 111 (115)
T 4hc9_A 59 GTSCANCQTT--TTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNR 111 (115)
T ss_dssp TCCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC-
T ss_pred cccCCCcCCC--CcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhccc
Confidence 3579999995 69999999999 89999999999999999999987766665544
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.22 E-value=7.8e-12 Score=106.30 Aligned_cols=47 Identities=45% Similarity=0.781 Sum_probs=41.3
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 017348 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRS 271 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~~sk~~~~ 271 (373)
.+.|.+|++ +.||+||+||.| .+|||||||+|+.++..|++.+.++.
T Consensus 5 ~~~C~~Cg~--~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpKKR 51 (115)
T 4hc9_A 5 GRECVNCGA--TSTPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPKRR 51 (115)
T ss_dssp -CCCTTTCC--SCCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCCCC
T ss_pred CCCCCCCCC--ccCCcceECCCC-CCcCcchhhhhhhccccccccccccc
Confidence 468999999 469999999999 79999999999999999998776543
No 8
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=95.81 E-value=0.0029 Score=39.21 Aligned_cols=19 Identities=63% Similarity=0.737 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhhhcccCC
Q 017348 153 RIASLVRFREKRKERCFDK 171 (373)
Q Consensus 153 R~asL~R~REKRK~R~~~K 171 (373)
|.+||.||.||||+|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 6789999999999987664
No 9
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=95.38 E-value=0.0077 Score=36.87 Aligned_cols=17 Identities=65% Similarity=0.782 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhhhcc.....
Q 017348 152 RRIASLVRFREKRKERC..... 168 (373)
Q Consensus 152 ~R~asL~R~REKRK~R~..... 168 (373)
.|.+||.||.||||+|.
T Consensus 5 aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 5 ARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred hHHHHHHHHHHHhhccC.....
Confidence 68999999999999973
No 10
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=37.57 E-value=4.4 Score=28.47 Aligned_cols=32 Identities=19% Similarity=0.585 Sum_probs=20.6
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHHHHhc
Q 017348 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANK 259 (373)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~ 259 (373)
..|..|+. +++-.+--.| ...|..||+-|..+
T Consensus 6 ~~CP~C~~----~~l~~d~~~g-elvC~~CG~v~~e~ 37 (50)
T 1pft_A 6 KVCPACES----AELIYDPERG-EIVCAKCGYVIEEN 37 (50)
T ss_dssp CSCTTTSC----CCEEEETTTT-EEEESSSCCBCCCC
T ss_pred EeCcCCCC----cceEEcCCCC-eEECcccCCccccc
Confidence 46888876 3444443344 68888888877543
No 11
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=37.31 E-value=9.2 Score=28.14 Aligned_cols=32 Identities=22% Similarity=0.481 Sum_probs=23.5
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHHHHhc
Q 017348 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANK 259 (373)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~ 259 (373)
..|..|+. ++...+.-.| ...|..||+-+..+
T Consensus 12 ~~Cp~C~~----~~lv~D~~~g-e~vC~~CGlVl~e~ 43 (58)
T 1dl6_A 12 VTCPNHPD----AILVEDYRAG-DMICPECGLVVGDR 43 (58)
T ss_dssp CSBTTBSS----SCCEECSSSC-CEECTTTCCEECCS
T ss_pred ccCcCCCC----CceeEeCCCC-eEEeCCCCCEEecc
Confidence 47999987 3456665556 79999999988654
No 12
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=37.07 E-value=7.2 Score=38.05 Aligned_cols=9 Identities=33% Similarity=0.693 Sum_probs=0.0
Q ss_pred ccccccccc
Q 017348 222 VRRCQHCGV 230 (373)
Q Consensus 222 ~~~C~~Cg~ 230 (373)
.|.|.||-+
T Consensus 314 ~~~~~~~~~ 322 (358)
T 2pk2_A 314 ARPNYHCQL 322 (358)
T ss_dssp ---------
T ss_pred CccceecHH
Confidence 567888865
No 13
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=36.86 E-value=6.1 Score=31.23 Aligned_cols=34 Identities=29% Similarity=0.499 Sum_probs=25.9
Q ss_pred ccccccccccCCCCccccccCCCCCcccchHHHHH
Q 017348 221 VVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (373)
Q Consensus 221 ~~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (373)
..|.|..|.+. ..+|.+.+--..+..-|-+||.+
T Consensus 16 ~tWVCpICsfs-N~v~s~fdp~~~~lPpC~aCGIk 49 (76)
T 2j9u_B 16 STWVCPICMVS-NETQGEFTKDTLPTPICINCGVP 49 (76)
T ss_dssp EEEECTTTCCE-EEESSCCCTTCSSCCBCTTTCCB
T ss_pred cceECcccccc-CcCccccCCCCCCCCcccccCcc
Confidence 47999999976 46777765544667789999974
No 14
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=33.82 E-value=3.3 Score=30.86 Aligned_cols=7 Identities=57% Similarity=1.497 Sum_probs=3.8
Q ss_pred ccccccc
Q 017348 224 RCQHCGV 230 (373)
Q Consensus 224 ~C~~Cg~ 230 (373)
.|..|++
T Consensus 15 eC~lC~v 21 (55)
T 2yrk_A 15 ECTLCGV 21 (55)
T ss_dssp CCTTTTC
T ss_pred cccccCc
Confidence 4555555
No 15
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=31.94 E-value=33 Score=29.57 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=31.1
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCC
Q 017348 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTL 262 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~l 262 (373)
...|..|+.. -|.|=.=..| ..+|-.|.-..+..|++
T Consensus 36 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 72 (138)
T 2owa_A 36 NRTCFDCESR---NPTWLSLSFA-VFICLNCSSDHRKMGVH 72 (138)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHTTCTT
T ss_pred CCcCCCCcCC---CCCeEEecCC-EEEhHhhhHHHhCCCCC
Confidence 4689999984 6999998888 89999999888876653
No 16
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.09 E-value=16 Score=25.24 Aligned_cols=40 Identities=18% Similarity=0.502 Sum_probs=27.4
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCC
Q 017348 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRD 264 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~ 264 (373)
...|..|+..-.....++. .....|..||..|..+..|+.
T Consensus 18 ~~~C~~C~k~f~~~~~l~~---~~~~~C~~C~~~f~~~~~l~~ 57 (73)
T 2ctu_A 18 SQKCSKCGIIFIRRSTLSR---RKTPMCEKCRKDSCQEAALNK 57 (73)
T ss_dssp EEECSSSCCEEECCCCCCC---SSSCCCHHHHHTCSCCCSSCC
T ss_pred CeeCCcccchhCCHHHhCc---CCCCCCCCCChhhcCHHHHHH
Confidence 4689999875323333444 446899999999987766554
No 17
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=28.33 E-value=36 Score=29.02 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=31.4
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCC
Q 017348 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTL 262 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~l 262 (373)
...|..|+.. -|.|=.=..| ..+|-.|.-..+..|.+
T Consensus 27 N~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~lG~h 63 (134)
T 2iqj_A 27 NKFCADCQSK---GPRWASWNIG-VFICIRCAGIHRNLGVH 63 (134)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCcCcCC---CCCeEEecCC-EEEhHhhhHHHhcCCCC
Confidence 5689999985 6999998888 89999999888877653
No 18
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=28.16 E-value=31 Score=25.01 Aligned_cols=31 Identities=26% Similarity=0.674 Sum_probs=21.7
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHH
Q 017348 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (373)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (373)
.+|+-||.+...+...=.|| | ...|+.|=..
T Consensus 12 ~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~~ 42 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDL 42 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECS-S-CEEEHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCC-C-CEehHHHHHH
Confidence 47999999754444444566 3 5899999654
No 19
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.92 E-value=37 Score=29.65 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=31.4
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCC
Q 017348 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTL 262 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~l 262 (373)
...|..|+.. -|.|=.=..| ..+|-.|--..+..|++
T Consensus 29 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 65 (149)
T 2crw_A 29 NKVCFDCGAK---NPSWASITYG-VFLCIDCSGSHRSLGVH 65 (149)
T ss_dssp TSBCSSSCCB---SCCCEETTTT-EECCHHHHHHHHHHCTT
T ss_pred CCcCCCCcCC---CCCcEEeccC-EEEchhcchhhccCCCC
Confidence 5689999984 7999998888 89999999888877654
No 20
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=27.78 E-value=20 Score=30.91 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=19.2
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHHH
Q 017348 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMW 256 (373)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~ 256 (373)
..|..|+-++ |-+-+++-. --.-|+|||-.-
T Consensus 104 VlC~~C~sPd--T~l~k~~r~-~~l~C~ACGa~~ 134 (139)
T 3cw2_K 104 VECSTCKSLD--TILKKEKKS-WYIVCLACGAQT 134 (139)
T ss_dssp SSCCSSSSSC--CCSCSSCST-TTSSCCC-----
T ss_pred eECCCCCCcC--cEEEEeCCe-EEEEecCCCCCC
Confidence 5799999975 777776522 247899999653
No 21
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=27.02 E-value=31 Score=26.47 Aligned_cols=32 Identities=25% Similarity=0.643 Sum_probs=22.4
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHHH
Q 017348 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMW 256 (373)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~ 256 (373)
.+|+-||.+...+...=.|| | ...|+.|=...
T Consensus 19 ~~CSFCGK~e~eV~~LIaGp-g-vyICdeCI~~c 50 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLC 50 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECS-S-CEEEHHHHHHH
T ss_pred cEecCCCCCHHHHcccCCCC-C-CChhHHHHHHH
Confidence 57999999654444444566 3 58999997544
No 22
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.85 E-value=52 Score=28.28 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=31.2
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCC
Q 017348 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTL 262 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~l 262 (373)
...|..|+.. -|.|=.=..| ..+|-.|.-..+..|++
T Consensus 29 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 65 (141)
T 2crr_A 29 NKYCADCEAK---GPRWASWNIG-VFICIRCAGIHRNLGVH 65 (141)
T ss_dssp GSSCSSSCCS---SCCSEETTTT-EECCHHHHHHHHHHCTT
T ss_pred CCcCCCCCCC---CCCeEEeccC-eEEhhhhhHhHhcCCCC
Confidence 4689999984 6999888888 89999999888877653
No 23
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=24.74 E-value=50 Score=29.39 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=30.9
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCC
Q 017348 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTL 262 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~l 262 (373)
...|..|+.. -|.|=.=..| ..||-.|.-..+..|.+
T Consensus 22 N~~CaDCga~---~P~WaS~nlG-vflCi~CSGiHR~LG~h 58 (163)
T 3sub_A 22 NNKCFDCGIS---NPDWVSVNHG-IFLCINCSGVHRSLGVH 58 (163)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHTCTT
T ss_pred CCccccCCCC---CCCeEEecCC-eeEHHhhhHHhcCCCCC
Confidence 5689999984 7999998888 89999998877776643
No 24
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=24.03 E-value=23 Score=30.31 Aligned_cols=31 Identities=26% Similarity=0.641 Sum_probs=23.6
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHH
Q 017348 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGL 254 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl 254 (373)
.+.|..||.. .+.....|..+.+..|-.||.
T Consensus 3 ~~~C~~CG~~--~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 3 MKFCSQCGGE--VILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp CCBCTTTCCB--CEEECCTTCSSCEEEETTTTE
T ss_pred cccCchhCCc--cccccccCCCCcceECCCCCC
Confidence 3589999984 455556677777889999994
No 25
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=23.96 E-value=45 Score=28.67 Aligned_cols=36 Identities=19% Similarity=0.455 Sum_probs=30.1
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCC
Q 017348 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGT 261 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~ 261 (373)
...|..|+.. -|.|=.-..| ..+|-.|.-..+..|.
T Consensus 25 N~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~LG~ 60 (140)
T 2olm_A 25 NRKCFDCDQR---GPTYVNMTVG-SFVCTSCSGSLRGLNP 60 (140)
T ss_dssp GGSCTTTCSS---CCCEEETTTT-EEECHHHHHHHTTSSS
T ss_pred CCcCCCCCCC---CCCceeeccC-EEEchhccchhccCCC
Confidence 4689999984 7999988888 8999999888776654
No 26
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=23.81 E-value=17 Score=38.19 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=0.0
Q ss_pred ccccccccccccCCCCccccccCCCCCcccchHHHHHHH
Q 017348 219 ETVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWA 257 (373)
Q Consensus 219 e~~~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~ 257 (373)
....|.|..|+++ ..+|...+--..+..-|-+||+.-.
T Consensus 114 ~~~tWvC~ICsfs-N~~~~~f~~~~~~~p~C~~CGi~p~ 151 (566)
T 1w7p_D 114 VVSTWVCPICMVS-NETQGEFTKDTLPTPICINCGVPAD 151 (566)
T ss_dssp ---------------------------------------
T ss_pred cccceeccccccC-CCCCCCCCcccCCCCcccccCCCCc
Confidence 3458999999986 4566665433355678999999753
No 27
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=22.50 E-value=21 Score=30.74 Aligned_cols=29 Identities=31% Similarity=0.707 Sum_probs=21.1
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHH
Q 017348 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGL 254 (373)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl 254 (373)
..|..|+-++ |-+-+++-. --.-|+|||-
T Consensus 103 VlC~~C~sPd--T~l~k~~r~-~~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRPD--TRIIREGRI-SLLKCEACGA 131 (138)
T ss_dssp HHHTCCSSCS--SCCEEETTT-TEEECSTTSC
T ss_pred EECCCCCCcC--cEEEEcCCe-EEEEccCCCC
Confidence 4699999975 777776522 2478999984
No 28
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.12 E-value=18 Score=19.85 Aligned_cols=17 Identities=24% Similarity=0.673 Sum_probs=12.6
Q ss_pred ccchHHHHHHHhcCCCC
Q 017348 247 TLCNACGLMWANKGTLR 263 (373)
Q Consensus 247 ~LCNACGl~~~~~~~lr 263 (373)
..|..||..|.....|+
T Consensus 3 ~~C~~C~k~f~~~~~l~ 19 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQLA 19 (26)
Confidence 56889999888765544
No 29
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=22.17 E-value=21 Score=26.45 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=27.1
Q ss_pred cccccc--cccCCCCccccccCCCCCcccchHHHHH
Q 017348 222 VRRCQH--CGVSENNTPAMRRGPAGPRTLCNACGLM 255 (373)
Q Consensus 222 ~~~C~~--Cg~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (373)
..+|.. |++ ..-|.|+-...|++..||-|+.+
T Consensus 9 pvRC~r~~Cra--ylNP~~~~~~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 9 PVLCSRTTCRA--VLNPLCQVDYRAKLWACNFCYQR 42 (59)
T ss_dssp CCBCSCTTTCC--BCCTTSEEEGGGTEEECSSSCCE
T ss_pred CcccCCCCCCe--EECCceEEECCCCEEEcccCCCc
Confidence 568998 998 46899998888889999999854
No 30
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=22.07 E-value=24 Score=30.89 Aligned_cols=30 Identities=30% Similarity=0.579 Sum_probs=21.3
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHH
Q 017348 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (373)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (373)
-.|..|+-++ |-+-+++- ---.-|+|||-.
T Consensus 105 VlC~~C~sPd--T~L~k~~r-~~~l~C~ACGa~ 134 (148)
T 2d74_B 105 VICPVCGSPD--TKIIKRDR-FHFLKCEACGAE 134 (148)
T ss_dssp SSCSSSCCTT--CCCCBSSS-SBCCCCSSSCCC
T ss_pred EECCCCCCcC--cEEEEeCC-EEEEEecCCCCC
Confidence 4799999975 77777542 224689999854
No 31
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=21.80 E-value=55 Score=28.59 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=30.5
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCC
Q 017348 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGT 261 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~ 261 (373)
...|..|+.. -|.|=.=..| ..||-.|.-..+.-|.
T Consensus 38 N~~CaDCga~---~P~WaS~nlG-vfiC~~CSgiHR~LG~ 73 (147)
T 3dwd_A 38 NNVCFECGAF---NPQWVSVTYG-IWICLECSGRHRGLGV 73 (147)
T ss_dssp TTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCccCCCCCC---CCCeEEeccc-EeEhHhhChHHhcCCC
Confidence 4589999984 6999998888 8999999988887654
No 32
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=21.27 E-value=20 Score=34.38 Aligned_cols=36 Identities=22% Similarity=0.425 Sum_probs=22.7
Q ss_pred cccccccccCCCCccc--cccCCCCC--cccchHHHHHHH
Q 017348 222 VRRCQHCGVSENNTPA--MRRGPAGP--RTLCNACGLMWA 257 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~--WR~GP~G~--~~LCNACGl~~~ 257 (373)
...|..|+-......+ -|.+..+- -+.|..||.+|+
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 3579999875322222 24454442 368999999995
No 33
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=21.27 E-value=44 Score=29.07 Aligned_cols=37 Identities=24% Similarity=0.490 Sum_probs=31.0
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCC
Q 017348 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTL 262 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~l 262 (373)
...|..|+.. -|.|=.-..| ..+|-.|.-..+.-|..
T Consensus 37 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 73 (144)
T 2p57_A 37 NKACFDCGAK---NPSWASITYG-VFLCIDCSGVHRSLGVH 73 (144)
T ss_dssp GGBCTTTCCB---SCCEEEGGGT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCCCcCC---CCCeEEeccC-EEEhhhchHHHcCCCCC
Confidence 4689999984 6999888888 89999999888877643
Done!