BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017349
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 100/240 (41%), Gaps = 16/240 (6%)
Query: 69 CKKSLSLSLPYLFIFSFHKPTARIQW-QALDPRSGRWFVLPPMPCPKAVCPQAFACTSLP 127
C+ + +F + R++ + DP +W + M ++ A
Sbjct: 53 CRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL----- 107
Query: 128 RQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGT 187
G L+ +GG D T + S Y +N+W +PM T RS G V G + AVGG
Sbjct: 108 -NGLLYAVGGF--DGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGY 164
Query: 188 GANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGG 247
+ ++ VECY+ ++ WT A++ + V+ + +Y G P +
Sbjct: 165 DVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSV-E 223
Query: 248 VYDINKDTWNLMSD-GMKEGWTGISIVLEGKLFVI-SEHGDCPM---KQYNPDDDTWRYV 302
VYD + W ++D M G+ V G L+V+ + G C + + YNP D W V
Sbjct: 224 VYDPTTNAWRQVADMNMCRRNAGVCAV-NGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 132 LFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANI 191
L+ +GG D +S +Y TTN W+ + M R VNG + VGG +
Sbjct: 207 LYAVGG--HDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSC 264
Query: 192 NETMTAVECYDPESDTWTTAA 212
N + +VE Y+P +D WT +
Sbjct: 265 N--LASVEYYNPTTDKWTVVS 283
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Query: 132 LFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANI 191
+ V+GG ++S Y +W + + + R + G + AVGG ++
Sbjct: 18 MVVVGG---QAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSL 74
Query: 192 NETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDI 251
+ V+ YDP D WT+ A +R + +AV+ +Y G+ S Y+I
Sbjct: 75 R--VRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEA-YNI 131
Query: 252 NKDTW 256
+ W
Sbjct: 132 KSNEW 136
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 100/241 (41%), Gaps = 21/241 (8%)
Query: 95 QALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRS--DTETPMQSTIMY 152
+A +P G W L + P++ G L+ +GG + D T + Y
Sbjct: 43 EAYNPSDGTWLRLADLQVPRSGLAGCVV------GGLLYAVGGRNNSPDGNTDSSALDCY 96
Query: 153 RATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAA 212
TNQW +PM PR+ G ++G I AVGG+ I+ +VE Y+PE D W A
Sbjct: 97 NPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHH--NSVERYEPERDEWHLVA 154
Query: 213 KLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISI 272
+ AV+ +Y G+ + Y ++ W +++ M +G +
Sbjct: 155 PMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNS-AECYYPERNEWRMIT-AMNTIRSGAGV 212
Query: 273 -VLEGKLFVISEHGD----CPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYV 327
VL ++ + +++Y+ + +TW +V P + + +G+IYV
Sbjct: 213 CVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA----PMKHRRSALGITVHQGRIYV 268
Query: 328 V 328
+
Sbjct: 269 L 269
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 12/180 (6%)
Query: 95 QALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRA 154
+ +P W ++ PM + L R L+ +GG D + S Y
Sbjct: 141 ERYEPERDEWHLVAPMLTRRI----GVGVAVLNRL--LYAVGGF--DGTNRLNSAECYYP 192
Query: 155 TTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKL 214
N+W++ + M T RS ++ I A GG + + +VE YD E++TWT A +
Sbjct: 193 ERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQ--DQLNSVERYDVETETWTFVAPM 250
Query: 215 RMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVL 274
+ + V ++YV G+ F YD + DTW+ ++ M G +G+ + +
Sbjct: 251 KHRRSALGITVHQGRIYVLGGYD-GHTFLDSVECYDPDTDTWSEVTR-MTSGRSGVGVAV 308
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 85/217 (39%), Gaps = 37/217 (17%)
Query: 166 LTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV 225
L PR + V I GG ++++ +E Y+P TW A L++ + V
Sbjct: 13 LVPRGSHMAPKVGRLIYTAGGY---FRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCV 69
Query: 226 MGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD--------GMKEGWTGISIVLEGK 277
+G +Y G SP G D +N M++ + G+ V++G
Sbjct: 70 VGGLLYAVGGRN----NSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG-VIDGH 124
Query: 278 LFVISEHGDC----PMKQYNPDDDTWRYVG-----GDKFPCEVMHR-PFAVNGVEGKIYV 327
++ + C +++Y P+ D W V V++R +AV G +G +
Sbjct: 125 IYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL 184
Query: 328 VSSGLNVAIGRVYEEQNGGISAEWKVMTAPRAFKDLA 364
S+ Y E+N EW+++TA + A
Sbjct: 185 NSAEC------YYPERN-----EWRMITAMNTIRSGA 210
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 100/241 (41%), Gaps = 21/241 (8%)
Query: 95 QALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRS--DTETPMQSTIMY 152
+A +P G W L + P++ G L+ +GG + D T + Y
Sbjct: 42 EAYNPSDGTWLRLADLQVPRSGLAGCVV------GGLLYAVGGRNNSPDGNTDSSALDCY 95
Query: 153 RATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAA 212
TNQW +PM PR+ G ++G I AVGG+ I+ +VE Y+PE D W A
Sbjct: 96 NPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHH--NSVERYEPERDEWHLVA 153
Query: 213 KLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISI 272
+ AV+ +Y G+ + Y ++ W +++ M +G +
Sbjct: 154 PMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNS-AECYYPERNEWRMIT-AMNTIRSGAGV 211
Query: 273 -VLEGKLFVISEHGD----CPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYV 327
VL ++ + +++Y+ + +TW +V P + + +G+IYV
Sbjct: 212 CVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA----PMKHRRSALGITVHQGRIYV 267
Query: 328 V 328
+
Sbjct: 268 L 268
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 12/180 (6%)
Query: 95 QALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRA 154
+ +P W ++ PM + L R L+ +GG D + S Y
Sbjct: 140 ERYEPERDEWHLVAPMLTRRI----GVGVAVLNRL--LYAVGGF--DGTNRLNSAECYYP 191
Query: 155 TTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKL 214
N+W++ + M T RS ++ I A GG + + +VE YD E++TWT A +
Sbjct: 192 ERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQ--DQLNSVERYDVETETWTFVAPM 249
Query: 215 RMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVL 274
+ + V ++YV G+ F YD + DTW+ ++ M G +G+ + +
Sbjct: 250 KHRRSALGITVHQGRIYVLGGYD-GHTFLDSVECYDPDTDTWSEVTR-MTSGRSGVGVAV 307
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 78/195 (40%), Gaps = 34/195 (17%)
Query: 188 GANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGG 247
G ++++ +E Y+P TW A L++ + V+G +Y G SP G
Sbjct: 31 GGYFRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRN----NSPDGN 86
Query: 248 VYDINKDTWNLMSD--------GMKEGWTGISIVLEGKLFVISEHGDC----PMKQYNPD 295
D +N M++ + G+ V++G ++ + C +++Y P+
Sbjct: 87 TDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG-VIDGHIYAVGGSHGCIHHNSVERYEPE 145
Query: 296 DDTWRYVG-----GDKFPCEVMHR-PFAVNGVEGKIYVVSSGLNVAIGRVYEEQNGGISA 349
D W V V++R +AV G +G + S+ Y E+N
Sbjct: 146 RDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAEC------YYPERN----- 194
Query: 350 EWKVMTAPRAFKDLA 364
EW+++TA + A
Sbjct: 195 EWRMITAMNTIRSGA 209
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 105/261 (40%), Gaps = 62/261 (23%)
Query: 95 QALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRS--DTETPMQSTIMY 152
+A +P +G W L + P++ G L+ +GG + D T + Y
Sbjct: 36 EAYNPSNGSWLRLADLQVPRSGLAGCVV------GGLLYAVGGRNNSPDGNTDSSALDCY 89
Query: 153 RATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAA 212
TNQW + M PR+ G ++G I AVGG+ I+ ++VE Y+PE D W A
Sbjct: 90 NPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHH--SSVERYEPERDEWHLVA 147
Query: 213 KL---RMG-----LARYDSAVMG---------SKMYVTEGWTWPF---MFSPRGGV---- 248
+ R+G L R AV G ++ Y E W M + R G
Sbjct: 148 PMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCV 207
Query: 249 ----------------------YDINKDTWNLMSDGMKEGWTGISI-VLEGKLFVISEHG 285
YD+ +TW ++ M+ + + I V +GK++V+ +
Sbjct: 208 LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP-MRHHRSALGITVHQGKIYVLGGYD 266
Query: 286 DC----PMKQYNPDDDTWRYV 302
++ Y+PD DTW V
Sbjct: 267 GHTFLDSVECYDPDSDTWSEV 287
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 12/180 (6%)
Query: 95 QALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRA 154
+ +P W ++ PM + L R L+ +GG D + S Y
Sbjct: 134 ERYEPERDEWHLVAPMLTRRI----GVGVAVLNR--LLYAVGGF--DGTNRLNSAECYYP 185
Query: 155 TTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKL 214
N+W++ +PM T RS ++ I A GG + + +VE YD E++TWT A +
Sbjct: 186 ERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQ--DQLNSVERYDVETETWTFVAPM 243
Query: 215 RMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVL 274
R + V K+YV G+ F YD + DTW+ ++ M G +G+ + +
Sbjct: 244 RHHRSALGITVHQGKIYVLGGYD-GHTFLDSVECYDPDSDTWSEVTR-MTSGRSGVGVAV 301
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 15/126 (11%)
Query: 188 GANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGG 247
G ++++ +E Y+P + +W A L++ + V+G +Y G SP G
Sbjct: 25 GGYFRQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRN----NSPDGN 80
Query: 248 VYDINKDTWNLMSD------GMKEGWTGISI-VLEGKLFVISEHGDC----PMKQYNPDD 296
D +N M++ M I + V++G ++ + C +++Y P+
Sbjct: 81 TDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVERYEPER 140
Query: 297 DTWRYV 302
D W V
Sbjct: 141 DEWHLV 146
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 105/261 (40%), Gaps = 62/261 (23%)
Query: 95 QALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRS--DTETPMQSTIMY 152
+A +P +G W L + P++ G L+ +GG + D T + Y
Sbjct: 35 EAYNPSNGSWLRLADLQVPRSGLAGCVV------GGLLYAVGGRNNSPDGNTDSSALDCY 88
Query: 153 RATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAA 212
TNQW + M PR+ G ++G I AVGG+ I+ ++VE Y+PE D W A
Sbjct: 89 NPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHH--SSVERYEPERDEWHLVA 146
Query: 213 KL---RMG-----LARYDSAVMG---------SKMYVTEGWTWPF---MFSPRGGV---- 248
+ R+G L R AV G ++ Y E W M + R G
Sbjct: 147 PMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCV 206
Query: 249 ----------------------YDINKDTWNLMSDGMKEGWTGISI-VLEGKLFVISEHG 285
YD+ +TW ++ M+ + + I V +GK++V+ +
Sbjct: 207 LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP-MRHHRSALGITVHQGKIYVLGGYD 265
Query: 286 DC----PMKQYNPDDDTWRYV 302
++ Y+PD DTW V
Sbjct: 266 GHTFLDSVECYDPDSDTWSEV 286
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 12/180 (6%)
Query: 95 QALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRA 154
+ +P W ++ PM + L R L+ +GG D + S Y
Sbjct: 133 ERYEPERDEWHLVAPMLTRRI----GVGVAVLNR--LLYAVGGF--DGTNRLNSAECYYP 184
Query: 155 TTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKL 214
N+W++ +PM T RS ++ I A GG + + +VE YD E++TWT A +
Sbjct: 185 ERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQ--DQLNSVERYDVETETWTFVAPM 242
Query: 215 RMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVL 274
R + V K+YV G+ F YD + DTW+ ++ M G +G+ + +
Sbjct: 243 RHHRSALGITVHQGKIYVLGGYD-GHTFLDSVECYDPDSDTWSEVTR-MTSGRSGVGVAV 300
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 15/126 (11%)
Query: 188 GANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGG 247
G ++++ +E Y+P + +W A L++ + V+G +Y G SP G
Sbjct: 24 GGYFRQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRN----NSPDGN 79
Query: 248 VYDINKDTWNLMSD------GMKEGWTGISI-VLEGKLFVISEHGDC----PMKQYNPDD 296
D +N M++ M I + V++G ++ + C +++Y P+
Sbjct: 80 TDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVERYEPER 139
Query: 297 DTWRYV 302
D W V
Sbjct: 140 DEWHLV 145
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 12/131 (9%)
Query: 95 QALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRA 154
+ DP +G W + PM ++ A ++V+GG D + S Y
Sbjct: 178 EKYDPHTGHWTNVTPMATKRSGAGVALL------NDHIYVVGGF--DGTAHLSSVEAYNI 229
Query: 155 TTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKL 214
T+ W + M TPR + + + G++ A+ G N ++++ECYDP D+W
Sbjct: 230 RTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDG--NSLLSSIECYDPIIDSWEVVTS- 286
Query: 215 RMGLARYDSAV 225
MG R D+ V
Sbjct: 287 -MGTQRCDAGV 296
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 12/192 (6%)
Query: 85 FHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTET 144
F + DP +W +L M + A G ++ LGG D
Sbjct: 121 FDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA------SGVIYCLGGY--DGLN 172
Query: 145 PMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPE 204
+ S Y T W +PM T RS +N I VGG + +++VE Y+
Sbjct: 173 ILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAH--LSSVEAYNIR 230
Query: 205 SDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD-GM 263
+D+WTT + + V+ ++Y G+ + S YD D+W +++ G
Sbjct: 231 TDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSI-ECYDPIIDSWEVVTSMGT 289
Query: 264 KEGWTGISIVLE 275
+ G+ ++ E
Sbjct: 290 QRCDAGVCVLRE 301
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 21/207 (10%)
Query: 132 LFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANI 191
L V+GG S ++P+ Y T +W + R + AS +++ +I +GG
Sbjct: 17 LLVVGGFGSQ-QSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDG-- 73
Query: 192 NETMTAVECYDPESD---TWTTAA--KLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRG 246
+++VEC D +D W + A +R GLA + +G +YV+ G+ +
Sbjct: 74 RSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA--GATTLGDMIYVSGGFDGSRRHTSM- 130
Query: 247 GVYDINKDTWNLMSDGMKEGWTGISIVL-EGKLFVISEHGDC----PMKQYNPDDDTWRY 301
YD N D W+++ D M+ G +V+ G ++ + + +++Y+P W
Sbjct: 131 ERYDPNIDQWSMLGD-MQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189
Query: 302 VGGDKFPCEVMHRPFAVNGVEGKIYVV 328
V P V + IYVV
Sbjct: 190 V----TPMATKRSGAGVALLNDHIYVV 212
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 12/147 (8%)
Query: 165 MLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSA 224
M PR+ G N ++ VGG G+ + VE YDP++ W+ + S
Sbjct: 2 MQGPRTRARLG-ANEVLLVVGGFGSQ-QSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV 59
Query: 225 VMGSKMYVTEGWTWPFMFSPRGGV-YDINKDT--WNLMSDGMKEGWTGISIVLEGKLFVI 281
+ ++YV G+ S + Y ++D +++ ++ G G + + G + +
Sbjct: 60 SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYV 117
Query: 282 SEHGD-----CPMKQYNPDDDTWRYVG 303
S D M++Y+P+ D W +G
Sbjct: 118 SGGFDGSRRHTSMERYDPNIDQWSMLG 144
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 104/245 (42%), Gaps = 29/245 (11%)
Query: 95 QALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRS--DTETPMQSTIMY 152
+A +P +G W L + P++ G L+ +GG + D T + Y
Sbjct: 42 EAYNPSNGTWLRLADLQVPRSGLAGCVV------GGLLYAVGGRNNSPDGNTDSSALDCY 95
Query: 153 RATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAA 212
TNQW +P PR+ G ++G I AVGG+ I+ +VE Y+PE D W A
Sbjct: 96 NPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHH--NSVERYEPERDEWHLVA 153
Query: 213 ---KLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMS--DGMKEGW 267
R+G+ AV+ +Y G+ + Y ++ W ++ + ++ G
Sbjct: 154 PXLTRRIGVG---VAVLNRLLYAVGGFDGTNRLNS-AECYYPERNEWRXITAXNTIRSG- 208
Query: 268 TGISIVLEGKLFVISEHGD----CPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEG 323
G+ VL ++ + +++Y+ + +TW +V P + + +G
Sbjct: 209 AGV-CVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA----PXKHRRSALGITVHQG 263
Query: 324 KIYVV 328
+IYV+
Sbjct: 264 RIYVL 268
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 132 LFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANI 191
++ GG D + + S Y T W +P RS G+I +GG +
Sbjct: 218 IYAAGGY--DGQDQLNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHT 275
Query: 192 NETMTAVECYDPESDTWTTAAKLRMGLARYDSAV 225
+ +VECYDP++DTW+ + G + AV
Sbjct: 276 --FLDSVECYDPDTDTWSEVTRXTSGRSGVGVAV 307
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 6/143 (4%)
Query: 132 LFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANI 191
L+ +GG D + S Y N+W+ + T RS ++ I A GG
Sbjct: 171 LYAVGGF--DGTNRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDGQ- 227
Query: 192 NETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDI 251
+ + +VE YD E++TWT A + + V ++YV G+ F YD
Sbjct: 228 -DQLNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYD-GHTFLDSVECYDP 285
Query: 252 NKDTWNLMSDGMKEGWTGISIVL 274
+ DTW+ ++ G +G+ + +
Sbjct: 286 DTDTWSEVTR-XTSGRSGVGVAV 307
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 77/195 (39%), Gaps = 34/195 (17%)
Query: 188 GANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGG 247
G ++++ +E Y+P + TW A L++ + V+G +Y G SP G
Sbjct: 31 GGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRN----NSPDGN 86
Query: 248 VYDINKDTWNLMSD--------GMKEGWTGISIVLEGKLFVISEHGDC----PMKQYNPD 295
D +N ++ + G+ V++G ++ + C +++Y P+
Sbjct: 87 TDSSALDCYNPXTNQWSPCAPXSVPRNRIGVG-VIDGHIYAVGGSHGCIHHNSVERYEPE 145
Query: 296 DDTWRYVGGD-----KFPCEVMHR-PFAVNGVEGKIYVVSSGLNVAIGRVYEEQNGGISA 349
D W V V++R +AV G +G + S+ Y E+N
Sbjct: 146 RDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAEC------YYPERN----- 194
Query: 350 EWKVMTAPRAFKDLA 364
EW+ +TA + A
Sbjct: 195 EWRXITAXNTIRSGA 209
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 69/173 (39%), Gaps = 12/173 (6%)
Query: 98 DPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTN 157
DP + +W + +P + + + G ++ LGG ++D + +Y
Sbjct: 133 DPVAAKWSEVKNLPI------KVYGHNVISHNGMIYCLGG-KTDDKKCTNRVFIYNPKKG 185
Query: 158 QWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMG 217
W+ +PM TPRS F GKI+ GG + +VE +D +++ W +
Sbjct: 186 DWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTE--DGLSASVEAFDLKTNKWEVMTEFPQE 243
Query: 218 LARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGI 270
+ + +Y G+ + S ++N D W D K+ W G+
Sbjct: 244 RSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVN-DIWKYEDD--KKEWAGM 293
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 4/133 (3%)
Query: 128 RQGKLFVLGGMRSDTET---PMQSTIM-YRATTNQWQLASPMLTPRSFFASGNVNGKIMA 183
+Q +++V+GG+ D E P+QS +++W P+ + R F G V+ KI
Sbjct: 55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYV 114
Query: 184 VGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFS 243
V G ++ +V CYDP + W+ L + + ++ +Y G T +
Sbjct: 115 VAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCT 174
Query: 244 PRGGVYDINKDTW 256
R +Y+ K W
Sbjct: 175 NRVFIYNPKKGDW 187
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 90/212 (42%), Gaps = 18/212 (8%)
Query: 97 LDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATT 156
LD S W LPP+P + + F + K++V+ G TE + S + Y
Sbjct: 83 LDNVSSEWVGLPPLPSARCL----FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVA 136
Query: 157 NQWQLASPMLTPRSFFASGNV--NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKL 214
+W + P + + NG I +GG + + V Y+P+ W A +
Sbjct: 137 AKWSEVKNL--PIKVYGHNVISHNGMIYCLGGK-TDDKKCTNRVFIYNPKKGDWKDLAPM 193
Query: 215 RMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIV- 273
+ + + A+ K+ + G T + S +D+ + W +M++ +E + IS+V
Sbjct: 194 KTPRSMFGVAIHKGKIVIAGGVTEDGL-SASVEAFDLKTNKWEVMTEFPQER-SSISLVS 251
Query: 274 LEGKLFVISEHGDCPM--KQYNPDD--DTWRY 301
L G L+ I + K++ P + D W+Y
Sbjct: 252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKY 283
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 26/225 (11%)
Query: 92 IQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMR-SDTETPMQSTI 150
+Q+ LD W +PP+P P+ + A S ++V+GG D E + S +
Sbjct: 70 LQFDHLD---SEWLGMPPLPSPRCLFGLGEALNS------IYVVGGREIKDGERCLDSVM 120
Query: 151 MYRATTNQWQLASPMLTPRSFFASGNVNGK--IMAVGGTGANINETMTAVECYDPESDTW 208
Y + +W + P+ P + ++ + +GG G++ + + + YDP+ W
Sbjct: 121 CYDRLSFKWGESDPL--PYVVYGHTVLSHMDLVYVIGGKGSD-RKCLNKMCVYDPKKFEW 177
Query: 209 TTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWT 268
A ++ + + + V ++ V G T + S VY I + W +E +
Sbjct: 178 KELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTS-SAEVYSITDNKWAPFEAFPQERSS 236
Query: 269 GISIVLEGKLFVI-------SEHGDCPMKQYNPDDDTWRYVGGDK 306
+ L G L+ I +E G+ + N D WRY +K
Sbjct: 237 LSLVSLVGTLYAIGGFATLETESGELVPTELN---DIWRYNEEEK 278
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 128 RQGKLFVLGGM---RSDTETPMQSTIM-YRATTNQWQLASPMLTPRSFFASGNVNGKIMA 183
++ ++FV GG+ + E PM + + + ++W P+ +PR F G I
Sbjct: 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYV 103
Query: 184 VGGTGANINE-TMTAVECYDPESDTW 208
VGG E + +V CYD S W
Sbjct: 104 VGGREIKDGERCLDSVMCYDRLSFKW 129
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 14/139 (10%)
Query: 129 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGT- 187
+GK++ GG + + Y T W MLT R NG I GG+
Sbjct: 101 EGKIYTSGGSEVGN-SALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSL 159
Query: 188 GANIN-ETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRG 246
G N++ + + E YDP ++TWT + + + K++ G + G
Sbjct: 160 GNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQ------NGLG 213
Query: 247 GV-----YDINKDTWNLMS 260
G+ YDI + W ++S
Sbjct: 214 GLDNVEYYDIKLNEWKMVS 232
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
Query: 132 LFVLGGMRSDTETPMQSTIMYRATTNQW--QLASPMLTPRSFFASGNVNGKIMAVGGTGA 189
+++LGG + P++ Y + W +L P TPR A+ GKI GG+
Sbjct: 58 VYILGGSQL---FPIKRMDCYNVVKDSWYSKLGPP--TPRDSLAACAAEGKIYTSGGSEV 112
Query: 190 NINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEG 235
N + ECYD +++W T + + +YV G
Sbjct: 113 G-NSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGG 157
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 71/182 (39%), Gaps = 36/182 (19%)
Query: 94 WQALDPRSGRW---FVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDT--ETPMQS 148
+ A P GRW LP +P A+ P + G++ + R+D +P
Sbjct: 168 YTAPQPGLGRWGPTIDLPIVPAAAAIEPTS---------GRVLMWSSYRNDAFGGSPGGI 218
Query: 149 TIMYRATTNQWQLASPMLTPRS-------FFASG---NVNGKIMAVGGTGANINETMTAV 198
T+ T+ W ++ +++ R+ F G + NG+I+ GG A
Sbjct: 219 TL-----TSSWDPSTGIVSDRTVTVTKHDMFXPGISMDGNGQIVVTGGNDAK------KT 267
Query: 199 ECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWP-FMFSPRGGVYDINKDTWN 257
YD SD+W +++ SA M T G +W +F G VY + TW
Sbjct: 268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327
Query: 258 LM 259
+
Sbjct: 328 SL 329
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 19/110 (17%)
Query: 125 SLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV-NGKIMA 183
S+ G++ V GG + + T +Y ++++ W M R + +S + +G++
Sbjct: 249 SMDGNGQIVVTGGNDA------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFT 302
Query: 184 VGGT-GANINETMTAVECYDPESDTWTT--AAKL-------RMGLARYDS 223
+GG+ + E E Y P S TWT+ AK+ + GL R D+
Sbjct: 303 IGGSWSGGVFEKNG--EVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDN 350
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 71/182 (39%), Gaps = 36/182 (19%)
Query: 94 WQALDPRSGRW---FVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDT--ETPMQS 148
+ A P GRW LP +P A+ P + G++ + R+D +P
Sbjct: 151 YTAPQPGLGRWGPTIDLPIVPAAAAIEPTS---------GRVLMWSSYRNDAFGGSPGGI 201
Query: 149 TIMYRATTNQWQLASPMLTPRS-------FFASG---NVNGKIMAVGGTGANINETMTAV 198
T+ T+ W ++ +++ R+ F G + NG+I+ GG A
Sbjct: 202 TL-----TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK------KT 250
Query: 199 ECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWP-FMFSPRGGVYDINKDTWN 257
YD SD+W +++ SA M T G +W +F G VY + TW
Sbjct: 251 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 310
Query: 258 LM 259
+
Sbjct: 311 SL 312
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 19/110 (17%)
Query: 125 SLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV-NGKIMA 183
S+ G++ V GG + + T +Y ++++ W M R + +S + +G++
Sbjct: 232 SMDGNGQIVVTGGNDA------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFT 285
Query: 184 VGGT-GANINETMTAVECYDPESDTWTT--AAKL-------RMGLARYDS 223
+GG+ + E E Y P S TWT+ AK+ + GL R D+
Sbjct: 286 IGGSWSGGVFEKNG--EVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDN 333
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 71/182 (39%), Gaps = 36/182 (19%)
Query: 94 WQALDPRSGRW---FVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDT--ETPMQS 148
+ A P GRW LP +P A+ P + G++ + R+D +P
Sbjct: 151 YTAPQPGLGRWGPTIDLPIVPAAAAIEPTS---------GRVLMWSSYRNDAFGGSPGGI 201
Query: 149 TIMYRATTNQWQLASPMLTPRS-------FFASG---NVNGKIMAVGGTGANINETMTAV 198
T+ T+ W ++ +++ R+ F G + NG+I+ GG A
Sbjct: 202 TL-----TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK------KT 250
Query: 199 ECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWP-FMFSPRGGVYDINKDTWN 257
YD SD+W +++ SA M T G +W +F G VY + TW
Sbjct: 251 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 310
Query: 258 LM 259
+
Sbjct: 311 SL 312
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 19/110 (17%)
Query: 125 SLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV-NGKIMA 183
S+ G++ V GG + + T +Y ++++ W M R + +S + +G++
Sbjct: 232 SMDGNGQIVVTGGNDA------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFT 285
Query: 184 VGGT-GANINETMTAVECYDPESDTWTT--AAKL-------RMGLARYDS 223
+GG+ + E E Y P S TWT+ AK+ + GL R D+
Sbjct: 286 IGGSWSGGVFEKNG--EVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDN 333
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 68/180 (37%), Gaps = 32/180 (17%)
Query: 94 WQALDPRSGRW---FVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTI 150
+ A P GRW LP +P A+ P + G++ + R+D I
Sbjct: 173 YTAPQPGLGRWGPTIDLPIVPAAAAIEPTS---------GRVLMWSSYRNDAFEGSPGGI 223
Query: 151 MYRATTNQWQLASPMLTPRS-------FFASG---NVNGKIMAVGGTGANINETMTAVEC 200
T+ W ++ +++ R+ F G + NG+I+ GG A
Sbjct: 224 TL---TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK------KTSL 274
Query: 201 YDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWP-FMFSPRGGVYDINKDTWNLM 259
YD SD+W +++ SA M T G ++ +F G VY + TW +
Sbjct: 275 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGGVFEKNGEVYSPSSKTWTSL 334
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 125 SLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV-NGKIMA 183
S+ G++ V GG + + T +Y ++++ W M R + +S + +G++
Sbjct: 254 SMDGNGQIVVTGGNDA------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFT 307
Query: 184 VGGT-GANINETMTAVECYDPESDTWTTAAKLRM 216
+GG+ + E E Y P S TWT+ ++
Sbjct: 308 IGGSFSGGVFEKNG--EVYSPSSKTWTSLPNAKV 339
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 71/182 (39%), Gaps = 36/182 (19%)
Query: 94 WQALDPRSGRW---FVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDT--ETPMQS 148
+ A P GRW LP +P A+ P + G++ + R+D +P
Sbjct: 151 YTAPQPGLGRWGPTIDLPIVPAAAAIEPTS---------GRVLMWSSYRNDAFGGSPGGI 201
Query: 149 TIMYRATTNQWQLASPMLTPRS-------FFASG---NVNGKIMAVGGTGANINETMTAV 198
T+ T+ W ++ +++ R+ F G + NG+I+ GG A
Sbjct: 202 TL-----TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK------KT 250
Query: 199 ECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWP-FMFSPRGGVYDINKDTWN 257
YD SD+W +++ SA M T G ++ +F G VY + TW
Sbjct: 251 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGGVFEKNGEVYSPSSKTWT 310
Query: 258 LM 259
+
Sbjct: 311 SL 312
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 19/110 (17%)
Query: 125 SLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV-NGKIMA 183
S+ G++ V GG + + T +Y ++++ W M R + +S + +G++
Sbjct: 232 SMDGNGQIVVTGGNDA------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFT 285
Query: 184 VGGT-GANINETMTAVECYDPESDTWTT--AAKL-------RMGLARYDS 223
+GG+ + E E Y P S TWT+ AK+ + GL R D+
Sbjct: 286 IGGSFSGGVFEKNG--EVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDN 333
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 36/182 (19%)
Query: 94 WQALDPRSGRW---FVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDT--ETPMQS 148
+ A P GRW LP +P A+ P + G++ + R+D +P
Sbjct: 151 YTAPQPGLGRWGPTIDLPIVPAAAAIEPTS---------GRVLMWSSYRNDAFGGSPGGI 201
Query: 149 TIMYRATTNQWQLASPMLTPRS-------FFASG---NVNGKIMAVGGTGANINETMTAV 198
T+ T+ W ++ +++ R+ F G + NG+I+ GG A
Sbjct: 202 TL-----TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK------KT 250
Query: 199 ECYDPESDTWTTAAKLRMGLARYDSAVMGS-KMYVTEGWTWPFMFSPRGGVYDINKDTWN 257
YD SD+W +++ SA M +++ G +F G VY + TW
Sbjct: 251 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSHSGGVFEKNGEVYSPSSKTWT 310
Query: 258 LM 259
+
Sbjct: 311 SL 312
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 36/182 (19%)
Query: 94 WQALDPRSGRW---FVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDT--ETPMQS 148
+ A P GRW LP +P A+ P + G++ + R+D +P
Sbjct: 151 YTAPQPGLGRWGPTIDLPIVPAAAAIEPTS---------GRVLMWSSYRNDAFGGSPGGI 201
Query: 149 TIMYRATTNQWQLASPMLTPRS-------FFASG---NVNGKIMAVGGTGANINETMTAV 198
T+ T+ W ++ +++ R+ F G + NG+I+ GG A
Sbjct: 202 TL-----TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK------KT 250
Query: 199 ECYDPESDTWTTAAKLRMGLARYDSAVMGS-KMYVTEGWTWPFMFSPRGGVYDINKDTWN 257
YD SD+W +++ SA M +++ G +F G VY + TW
Sbjct: 251 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSGSGGVFEKNGEVYSPSSKTWT 310
Query: 258 LM 259
+
Sbjct: 311 SL 312
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,767,514
Number of Sequences: 62578
Number of extensions: 503105
Number of successful extensions: 1048
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 946
Number of HSP's gapped (non-prelim): 54
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)