Query 017349
Match_columns 373
No_of_seqs 209 out of 2737
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 07:48:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 3.5E-45 7.6E-50 346.8 32.2 318 26-360 227-559 (571)
2 PHA02713 hypothetical protein; 100.0 6E-42 1.3E-46 326.3 30.1 261 78-356 258-542 (557)
3 KOG4441 Proteins containing BT 100.0 1E-38 2.3E-43 302.7 24.4 249 43-304 299-555 (571)
4 PHA03098 kelch-like protein; P 100.0 2.9E-37 6.3E-42 296.6 28.9 253 93-362 265-526 (534)
5 PLN02153 epithiospecifier prot 100.0 1.4E-36 3E-41 275.3 30.9 243 99-355 4-292 (341)
6 PLN02153 epithiospecifier prot 100.0 9.3E-37 2E-41 276.5 28.5 282 56-341 8-335 (341)
7 PLN02193 nitrile-specifier pro 100.0 1.5E-35 3.3E-40 278.0 34.6 271 76-355 119-418 (470)
8 PHA02713 hypothetical protein; 100.0 1.7E-37 3.6E-42 295.9 21.6 247 48-304 275-542 (557)
9 TIGR03548 mutarot_permut cycli 100.0 1.2E-35 2.6E-40 267.3 28.1 247 74-335 10-316 (323)
10 TIGR03547 muta_rot_YjhT mutatr 100.0 6.2E-35 1.3E-39 265.5 29.7 247 74-333 14-332 (346)
11 PLN02193 nitrile-specifier pro 100.0 8.1E-35 1.8E-39 273.1 30.4 279 55-341 151-464 (470)
12 PRK14131 N-acetylneuraminic ac 100.0 1.5E-34 3.3E-39 264.7 29.4 265 73-352 34-373 (376)
13 PHA02790 Kelch-like protein; P 100.0 2E-34 4.3E-39 271.2 27.6 205 129-354 271-477 (480)
14 KOG4693 Uncharacterized conser 100.0 3.5E-34 7.5E-39 232.8 20.1 259 71-332 17-312 (392)
15 PHA03098 kelch-like protein; P 100.0 1.1E-33 2.4E-38 271.8 25.2 242 53-306 272-522 (534)
16 PHA02790 Kelch-like protein; P 100.0 6.5E-33 1.4E-37 260.9 25.7 203 76-303 270-478 (480)
17 TIGR03548 mutarot_permut cycli 100.0 1.2E-32 2.6E-37 247.9 26.3 231 119-356 5-288 (323)
18 TIGR03547 muta_rot_YjhT mutatr 100.0 6.1E-32 1.3E-36 245.9 27.0 238 107-356 1-307 (346)
19 PRK14131 N-acetylneuraminic ac 100.0 2.1E-30 4.4E-35 237.5 26.0 242 103-356 18-329 (376)
20 KOG4693 Uncharacterized conser 100.0 6.6E-30 1.4E-34 207.9 19.2 234 119-356 15-285 (392)
21 KOG0379 Kelch repeat-containin 99.9 1.7E-25 3.8E-30 209.5 25.0 235 118-358 61-312 (482)
22 KOG0379 Kelch repeat-containin 99.9 6.4E-24 1.4E-28 199.0 25.4 228 74-306 67-312 (482)
23 KOG4152 Host cell transcriptio 99.9 1.1E-24 2.5E-29 192.1 17.0 267 56-332 18-342 (830)
24 KOG1230 Protein containing rep 99.9 5.4E-24 1.2E-28 183.4 17.4 234 118-354 67-347 (521)
25 KOG1230 Protein containing rep 99.9 3.6E-22 7.8E-27 172.2 17.8 268 24-302 30-347 (521)
26 KOG4152 Host cell transcriptio 99.9 6.5E-21 1.4E-25 168.6 16.6 245 101-355 16-310 (830)
27 COG3055 Uncharacterized protei 99.8 3.1E-18 6.8E-23 146.0 21.7 258 75-346 44-375 (381)
28 COG3055 Uncharacterized protei 99.6 9.3E-15 2E-19 125.0 16.4 215 105-331 28-294 (381)
29 PF13964 Kelch_6: Kelch motif 99.3 1.2E-11 2.6E-16 78.2 6.1 50 168-218 1-50 (50)
30 PF13964 Kelch_6: Kelch motif 99.1 1.6E-10 3.4E-15 73.0 6.2 49 118-169 2-50 (50)
31 KOG2437 Muskelin [Signal trans 99.0 1.5E-10 3.3E-15 103.4 4.5 185 99-285 236-457 (723)
32 KOG2437 Muskelin [Signal trans 99.0 9.6E-11 2.1E-15 104.6 3.2 226 77-304 272-543 (723)
33 PF01344 Kelch_1: Kelch motif; 99.0 3E-10 6.5E-15 70.8 4.5 47 168-215 1-47 (47)
34 TIGR01640 F_box_assoc_1 F-box 99.0 2.2E-07 4.9E-12 79.5 21.6 182 147-331 14-216 (230)
35 PF13415 Kelch_3: Galactose ox 99.0 1.2E-09 2.7E-14 68.5 5.6 49 129-177 1-49 (49)
36 PF13415 Kelch_3: Galactose ox 98.9 4.5E-09 9.8E-14 65.9 5.8 48 178-225 1-48 (49)
37 PF07646 Kelch_2: Kelch motif; 98.9 7.1E-09 1.5E-13 65.0 6.2 48 168-215 1-49 (49)
38 PF01344 Kelch_1: Kelch motif; 98.8 5.9E-09 1.3E-13 64.9 4.4 45 217-261 1-45 (47)
39 smart00612 Kelch Kelch domain. 98.8 1.1E-08 2.4E-13 63.6 5.1 47 180-228 1-47 (47)
40 PF13418 Kelch_4: Galactose ox 98.8 7.6E-09 1.6E-13 65.0 4.2 47 168-215 1-48 (49)
41 TIGR01640 F_box_assoc_1 F-box 98.7 6.4E-06 1.4E-10 70.5 21.3 199 92-297 14-230 (230)
42 PF07646 Kelch_2: Kelch motif; 98.7 6.7E-08 1.4E-12 60.5 5.6 45 217-261 1-47 (49)
43 PF13418 Kelch_4: Galactose ox 98.6 4.2E-08 9.1E-13 61.6 4.3 45 217-261 1-46 (49)
44 smart00612 Kelch Kelch domain. 98.6 6.7E-08 1.4E-12 60.0 4.7 47 131-179 1-47 (47)
45 PF07250 Glyoxal_oxid_N: Glyox 98.6 7.5E-06 1.6E-10 69.3 18.3 148 148-307 47-210 (243)
46 PF07250 Glyoxal_oxid_N: Glyox 98.6 3.5E-06 7.5E-11 71.3 16.1 149 197-356 47-207 (243)
47 PF12937 F-box-like: F-box-lik 98.6 3.7E-08 7.9E-13 61.1 3.0 41 27-67 1-41 (47)
48 KOG0281 Beta-TrCP (transducin 98.6 3E-06 6.5E-11 72.9 14.3 272 23-333 71-380 (499)
49 PLN03215 ascorbic acid mannose 98.5 5.3E-05 1.1E-09 68.0 21.5 39 25-63 2-41 (373)
50 PLN02772 guanylate kinase 98.3 6E-06 1.3E-10 74.3 10.3 84 167-254 23-110 (398)
51 PF13854 Kelch_5: Kelch motif 98.3 2.7E-06 5.9E-11 51.1 5.4 42 165-206 1-42 (42)
52 smart00256 FBOX A Receptor for 98.2 7.3E-07 1.6E-11 53.5 2.5 38 30-67 1-38 (41)
53 PF00646 F-box: F-box domain; 98.2 2.5E-07 5.4E-12 57.7 0.4 43 26-68 2-44 (48)
54 PF13854 Kelch_5: Kelch motif 98.2 4.7E-06 1E-10 50.1 5.0 40 214-253 1-41 (42)
55 PLN02772 guanylate kinase 98.1 2.2E-05 4.8E-10 70.7 9.7 82 216-297 23-110 (398)
56 PRK11138 outer membrane biogen 98.1 0.0057 1.2E-07 56.9 26.0 223 76-353 119-361 (394)
57 PRK11138 outer membrane biogen 98.1 0.0053 1.1E-07 57.1 25.7 231 74-353 66-320 (394)
58 PF03089 RAG2: Recombination a 97.9 0.0013 2.8E-08 55.7 16.7 118 131-249 39-187 (337)
59 TIGR03300 assembly_YfgL outer 97.9 0.019 4.1E-07 53.1 26.7 223 75-353 63-305 (377)
60 PF07893 DUF1668: Protein of u 97.9 0.015 3.3E-07 52.7 24.1 120 128-261 75-216 (342)
61 TIGR03300 assembly_YfgL outer 97.9 0.015 3.2E-07 53.8 24.2 155 148-330 201-369 (377)
62 PF07893 DUF1668: Protein of u 97.7 0.005 1.1E-07 55.8 18.3 123 177-308 75-220 (342)
63 PF08450 SGL: SMP-30/Gluconola 97.5 0.028 6.1E-07 48.5 19.7 214 77-329 11-244 (246)
64 PF08450 SGL: SMP-30/Gluconola 97.5 0.032 6.8E-07 48.2 19.7 199 129-357 11-223 (246)
65 PF13360 PQQ_2: PQQ-like domai 97.4 0.062 1.3E-06 45.9 25.1 182 129-352 36-237 (238)
66 PF12768 Rax2: Cortical protei 97.3 0.019 4.1E-07 50.2 15.5 154 195-353 15-190 (281)
67 PF13360 PQQ_2: PQQ-like domai 97.2 0.12 2.6E-06 44.0 21.8 163 148-332 4-183 (238)
68 PF03089 RAG2: Recombination a 97.1 0.095 2.1E-06 44.8 17.3 104 181-285 41-174 (337)
69 PF12768 Rax2: Cortical protei 97.0 0.024 5.2E-07 49.5 13.1 118 231-356 2-130 (281)
70 COG4257 Vgb Streptogramin lyas 96.9 0.25 5.4E-06 42.3 18.6 229 94-362 85-320 (353)
71 KOG2120 SCF ubiquitin ligase, 96.8 0.00087 1.9E-08 57.5 2.7 45 23-67 94-138 (419)
72 PF05096 Glu_cyclase_2: Glutam 96.8 0.23 5E-06 42.6 17.1 192 119-332 44-252 (264)
73 KOG2055 WD40 repeat protein [G 96.8 0.15 3.2E-06 46.4 16.5 192 121-341 216-415 (514)
74 KOG2055 WD40 repeat protein [G 96.8 0.082 1.8E-06 48.0 14.7 176 90-296 235-418 (514)
75 TIGR03866 PQQ_ABC_repeats PQQ- 96.7 0.29 6.3E-06 43.0 18.7 142 131-298 2-148 (300)
76 KOG0274 Cdc4 and related F-box 96.6 0.35 7.6E-06 46.6 19.3 250 22-300 103-364 (537)
77 PF12217 End_beta_propel: Cata 96.6 0.22 4.7E-06 42.1 15.1 162 119-284 76-258 (367)
78 TIGR02800 propeller_TolB tol-p 96.6 0.66 1.4E-05 43.4 23.7 146 147-303 214-362 (417)
79 COG4257 Vgb Streptogramin lyas 96.6 0.28 6.1E-06 42.0 15.6 184 94-303 126-313 (353)
80 PF10282 Lactonase: Lactonase, 96.5 0.64 1.4E-05 42.4 20.2 252 75-355 46-332 (345)
81 TIGR03866 PQQ_ABC_repeats PQQ- 96.5 0.56 1.2E-05 41.2 20.6 177 92-299 11-191 (300)
82 PF08268 FBA_3: F-box associat 96.4 0.064 1.4E-06 41.1 10.6 79 224-304 2-89 (129)
83 PRK13684 Ycf48-like protein; P 96.3 0.77 1.7E-05 41.6 20.7 195 101-331 118-322 (334)
84 PF03178 CPSF_A: CPSF A subuni 96.3 0.33 7.1E-06 43.7 16.5 121 196-330 62-190 (321)
85 PF14870 PSII_BNR: Photosynthe 96.3 0.7 1.5E-05 41.0 18.5 237 76-356 26-270 (302)
86 PF10282 Lactonase: Lactonase, 96.2 0.64 1.4E-05 42.4 17.9 172 148-331 16-212 (345)
87 PF03178 CPSF_A: CPSF A subuni 95.9 0.39 8.5E-06 43.3 14.9 150 130-294 42-203 (321)
88 PRK04792 tolB translocation pr 95.8 1.8 3.9E-05 41.1 24.8 148 146-304 241-391 (448)
89 PLN02919 haloacid dehalogenase 95.8 2.7 5.8E-05 44.4 21.9 158 121-299 686-892 (1057)
90 KOG2997 F-box protein FBX9 [Ge 95.6 0.0056 1.2E-07 52.9 1.6 43 27-69 107-154 (366)
91 PF05096 Glu_cyclase_2: Glutam 95.5 1.1 2.4E-05 38.6 14.8 108 173-296 49-158 (264)
92 PRK11028 6-phosphogluconolacto 95.4 1.9 4.2E-05 38.8 24.2 186 92-302 12-214 (330)
93 cd00200 WD40 WD40 domain, foun 95.2 1.7 3.7E-05 37.1 20.0 144 129-297 20-167 (289)
94 COG1520 FOG: WD40-like repeat 95.0 3 6.4E-05 38.4 19.4 200 129-354 68-277 (370)
95 KOG0310 Conserved WD40 repeat- 94.9 1.3 2.9E-05 40.7 14.2 137 148-300 49-190 (487)
96 cd00094 HX Hemopexin-like repe 94.9 1.9 4E-05 35.7 16.1 140 129-298 16-178 (194)
97 PF02191 OLF: Olfactomedin-lik 94.9 2.3 4.9E-05 36.7 17.6 194 75-294 28-246 (250)
98 PF08268 FBA_3: F-box associat 94.9 0.36 7.8E-06 36.9 9.4 81 272-354 2-87 (129)
99 PLN00033 photosystem II stabil 94.9 3.3 7.1E-05 38.4 22.5 224 98-356 116-365 (398)
100 PF02191 OLF: Olfactomedin-lik 94.8 1.7 3.6E-05 37.5 14.1 183 129-331 30-239 (250)
101 PRK05137 tolB translocation pr 94.8 3.8 8.2E-05 38.7 27.1 146 147-303 226-374 (435)
102 KOG0310 Conserved WD40 repeat- 94.7 1.5 3.3E-05 40.3 14.1 173 91-296 47-226 (487)
103 PRK00178 tolB translocation pr 94.7 3.9 8.5E-05 38.5 21.2 181 91-296 222-407 (430)
104 PLN02919 haloacid dehalogenase 94.6 7.4 0.00016 41.3 27.3 230 77-331 579-878 (1057)
105 PRK03629 tolB translocation pr 94.5 4.3 9.3E-05 38.3 25.5 147 147-304 223-372 (429)
106 KOG0316 Conserved WD40 repeat- 94.4 2.1 4.5E-05 35.9 12.9 133 148-298 40-176 (307)
107 KOG0291 WD40-repeat-containing 94.4 5.7 0.00012 39.1 22.8 151 130-303 319-474 (893)
108 PRK04922 tolB translocation pr 94.3 4.8 0.0001 38.0 25.0 146 146-303 227-376 (433)
109 smart00284 OLF Olfactomedin-li 94.3 1.7 3.7E-05 37.4 12.8 140 227-373 34-190 (255)
110 PRK13684 Ycf48-like protein; P 94.3 4.1 8.8E-05 36.9 22.0 214 100-357 33-254 (334)
111 PRK00178 tolB translocation pr 94.2 5 0.00011 37.8 24.9 147 147-304 223-372 (430)
112 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.2 1.4 3.1E-05 42.6 13.8 114 173-301 64-197 (527)
113 KOG0289 mRNA splicing factor [ 93.9 3 6.6E-05 38.1 14.0 121 171-308 350-475 (506)
114 cd00216 PQQ_DH Dehydrogenases 93.8 6.6 0.00014 37.7 18.4 114 173-301 56-191 (488)
115 cd00200 WD40 WD40 domain, foun 93.8 3.8 8.3E-05 34.9 23.1 175 92-297 73-251 (289)
116 cd00216 PQQ_DH Dehydrogenases 93.5 7.5 0.00016 37.3 21.6 113 129-258 61-191 (488)
117 PLN00181 protein SPA1-RELATED; 93.4 11 0.00023 38.8 19.9 140 130-296 545-691 (793)
118 PRK04792 tolB translocation pr 93.3 7.7 0.00017 36.8 22.6 199 77-301 229-430 (448)
119 PRK05137 tolB translocation pr 93.2 7.8 0.00017 36.6 21.9 188 91-302 225-419 (435)
120 PRK04922 tolB translocation pr 92.6 9.3 0.0002 36.0 21.5 181 91-297 227-413 (433)
121 smart00284 OLF Olfactomedin-li 91.8 7.7 0.00017 33.4 18.2 195 77-295 34-252 (255)
122 PF07734 FBA_1: F-box associat 91.8 4 8.6E-05 32.6 11.1 82 224-306 2-94 (164)
123 COG2706 3-carboxymuconate cycl 91.5 9.8 0.00021 34.0 26.0 252 75-354 49-330 (346)
124 PF07734 FBA_1: F-box associat 91.5 2.4 5.2E-05 33.9 9.5 82 272-354 2-90 (164)
125 PF14870 PSII_BNR: Photosynthe 91.4 9.9 0.00021 33.8 21.4 224 100-363 4-233 (302)
126 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.2 7.2 0.00016 37.9 14.0 122 222-354 64-198 (527)
127 TIGR03074 PQQ_membr_DH membran 91.2 19 0.00041 36.7 17.4 114 129-258 194-352 (764)
128 PRK04043 tolB translocation pr 91.2 13 0.00029 34.9 23.9 190 91-302 212-407 (419)
129 PRK11028 6-phosphogluconolacto 90.9 12 0.00025 33.8 27.3 245 76-355 45-314 (330)
130 PTZ00421 coronin; Provisional 90.9 16 0.00034 35.2 21.3 152 130-302 138-297 (493)
131 PLN00033 photosystem II stabil 90.8 14 0.0003 34.4 20.5 114 205-331 269-390 (398)
132 PLN00181 protein SPA1-RELATED; 90.8 22 0.00047 36.6 22.6 144 129-297 587-740 (793)
133 PRK04043 tolB translocation pr 90.3 16 0.00035 34.3 19.2 144 147-304 213-366 (419)
134 PF06433 Me-amine-dh_H: Methyl 90.2 14 0.0003 33.3 14.5 118 78-209 3-131 (342)
135 PRK03629 tolB translocation pr 90.1 17 0.00037 34.3 21.8 183 91-297 222-408 (429)
136 PF02897 Peptidase_S9_N: Proly 89.8 17 0.00037 33.9 23.1 195 86-295 144-357 (414)
137 KOG0296 Angio-associated migra 89.6 15 0.00033 32.9 18.7 145 77-255 75-223 (399)
138 KOG0281 Beta-TrCP (transducin 88.7 14 0.00031 32.9 12.2 92 224-331 326-418 (499)
139 cd00094 HX Hemopexin-like repe 88.7 12 0.00027 30.8 15.9 99 129-255 62-178 (194)
140 KOG0316 Conserved WD40 repeat- 88.2 15 0.00032 31.1 14.9 184 129-343 70-255 (307)
141 PRK02889 tolB translocation pr 87.9 24 0.00052 33.2 23.5 144 147-303 220-368 (427)
142 TIGR02800 propeller_TolB tol-p 87.4 25 0.00054 32.8 23.3 148 92-261 214-363 (417)
143 PTZ00420 coronin; Provisional 87.3 31 0.00068 33.8 18.4 101 180-296 139-249 (568)
144 PTZ00421 coronin; Provisional 87.1 30 0.00064 33.3 20.1 145 129-296 87-246 (493)
145 KOG0305 Anaphase promoting com 87.0 29 0.00062 33.1 15.1 171 148-340 198-373 (484)
146 PF07433 DUF1513: Protein of u 86.7 22 0.00048 31.5 23.5 237 77-331 16-276 (305)
147 KOG1036 Mitotic spindle checkp 86.6 21 0.00046 31.3 15.7 130 148-297 36-165 (323)
148 KOG1332 Vesicle coat complex C 86.3 20 0.00043 30.5 12.2 54 250-304 241-296 (299)
149 KOG0289 mRNA splicing factor [ 86.0 29 0.00062 32.1 18.0 120 119-261 348-471 (506)
150 KOG0296 Angio-associated migra 85.9 26 0.00056 31.6 13.8 130 178-330 75-209 (399)
151 PRK01742 tolB translocation pr 85.9 31 0.00068 32.5 21.5 160 147-330 228-390 (429)
152 KOG0291 WD40-repeat-containing 85.8 40 0.00086 33.6 21.2 141 173-333 311-457 (893)
153 COG1520 FOG: WD40-like repeat 85.1 31 0.00067 31.7 20.6 155 175-353 65-225 (370)
154 PF14583 Pectate_lyase22: Olig 84.7 32 0.0007 31.6 13.6 232 77-331 47-302 (386)
155 KOG0266 WD40 repeat-containing 84.4 38 0.00083 32.2 20.3 155 121-297 250-411 (456)
156 PF12217 End_beta_propel: Cata 84.0 27 0.00058 30.0 14.5 182 144-330 41-257 (367)
157 PF06433 Me-amine-dh_H: Methyl 83.8 33 0.00071 31.0 15.2 71 227-300 249-325 (342)
158 KOG0266 WD40 repeat-containing 82.7 45 0.00098 31.7 18.3 147 127-297 212-366 (456)
159 KOG0306 WD40-repeat-containing 82.5 55 0.0012 32.6 15.3 166 148-342 44-218 (888)
160 KOG2111 Uncharacterized conser 82.5 34 0.00075 30.2 13.1 148 129-298 58-215 (346)
161 KOG0278 Serine/threonine kinas 82.5 29 0.00063 29.7 10.7 129 147-294 165-298 (334)
162 KOG0278 Serine/threonine kinas 82.0 31 0.00068 29.5 12.0 97 122-237 188-288 (334)
163 KOG1332 Vesicle coat complex C 81.9 32 0.00068 29.4 18.5 24 229-258 176-199 (299)
164 COG3386 Gluconolactonase [Carb 81.0 41 0.00088 30.1 24.3 213 89-332 44-277 (307)
165 TIGR03074 PQQ_membr_DH membran 80.8 24 0.00052 36.0 11.6 33 221-260 188-222 (764)
166 PLN03215 ascorbic acid mannose 80.8 23 0.00049 32.5 10.4 99 253-356 189-303 (373)
167 KOG0649 WD40 repeat protein [G 80.7 35 0.00075 29.1 14.5 149 157-329 99-263 (325)
168 KOG0315 G-protein beta subunit 80.0 37 0.00081 29.0 17.2 147 125-297 47-199 (311)
169 COG4946 Uncharacterized protei 79.4 56 0.0012 30.7 18.0 167 63-259 263-438 (668)
170 COG4946 Uncharacterized protei 77.7 64 0.0014 30.4 19.2 151 129-303 235-398 (668)
171 PRK02889 tolB translocation pr 77.5 64 0.0014 30.4 20.2 147 146-303 175-324 (427)
172 TIGR02658 TTQ_MADH_Hv methylam 77.1 59 0.0013 29.7 20.3 122 76-210 11-142 (352)
173 KOG2321 WD40 repeat protein [G 75.5 39 0.00085 32.5 10.4 95 147-255 155-261 (703)
174 KOG4378 Nuclear protein COP1 [ 75.3 60 0.0013 30.7 11.3 89 197-295 188-280 (673)
175 KOG0315 G-protein beta subunit 74.8 54 0.0012 28.1 22.3 180 91-297 60-247 (311)
176 KOG2048 WD40 repeat protein [G 74.3 92 0.002 30.6 20.2 165 147-330 47-222 (691)
177 PF02239 Cytochrom_D1: Cytochr 73.6 75 0.0016 29.3 13.8 134 146-297 15-160 (369)
178 KOG0649 WD40 repeat protein [G 73.6 57 0.0012 27.9 15.3 165 103-294 100-273 (325)
179 KOG0286 G-protein beta subunit 73.3 64 0.0014 28.3 19.8 206 93-331 78-293 (343)
180 TIGR02658 TTQ_MADH_Hv methylam 72.9 76 0.0016 29.0 24.3 83 73-161 53-142 (352)
181 KOG0286 G-protein beta subunit 72.9 66 0.0014 28.3 17.0 135 148-297 78-219 (343)
182 KOG0282 mRNA splicing factor [ 72.3 72 0.0016 30.0 11.1 105 129-256 226-334 (503)
183 KOG3881 Uncharacterized conser 72.1 79 0.0017 28.9 14.3 146 129-298 160-323 (412)
184 PRK01742 tolB translocation pr 71.1 93 0.002 29.3 20.4 162 91-284 227-391 (429)
185 PF13013 F-box-like_2: F-box-l 69.6 4.5 9.7E-05 29.8 2.5 30 26-55 21-50 (109)
186 PTZ00420 coronin; Provisional 69.4 1.2E+02 0.0026 29.9 17.5 137 93-256 149-297 (568)
187 KOG2321 WD40 repeat protein [G 69.0 52 0.0011 31.7 9.6 114 168-297 133-260 (703)
188 PF02239 Cytochrom_D1: Cytochr 68.8 97 0.0021 28.6 18.4 244 77-355 5-263 (369)
189 KOG0639 Transducin-like enhanc 68.5 1.1E+02 0.0024 29.1 15.2 138 93-254 441-583 (705)
190 PF14781 BBS2_N: Ciliary BBSom 67.7 33 0.00071 26.3 6.7 65 229-302 65-134 (136)
191 KOG2048 WD40 repeat protein [G 67.2 1.3E+02 0.0029 29.6 22.2 133 224-371 160-305 (691)
192 PRK10115 protease 2; Provision 66.9 1.5E+02 0.0033 30.0 25.3 149 146-302 198-353 (686)
193 PF14781 BBS2_N: Ciliary BBSom 64.0 36 0.00078 26.1 6.4 69 275-354 63-134 (136)
194 PF02897 Peptidase_S9_N: Proly 63.7 1.3E+02 0.0028 28.1 24.4 204 124-341 129-353 (414)
195 KOG0265 U5 snRNP-specific prot 63.6 1.1E+02 0.0023 27.1 10.4 98 178-297 58-165 (338)
196 KOG0285 Pleiotropic regulator 63.1 1.2E+02 0.0026 27.6 17.2 32 272-304 367-399 (460)
197 COG3823 Glutamine cyclotransfe 62.5 84 0.0018 26.3 8.6 97 222-331 50-149 (262)
198 KOG3545 Olfactomedin and relat 62.3 1E+02 0.0022 26.5 12.1 172 100-294 54-245 (249)
199 COG3823 Glutamine cyclotransfe 61.6 96 0.0021 26.0 13.9 189 121-331 47-249 (262)
200 PF13570 PQQ_3: PQQ-like domai 61.2 15 0.00032 21.1 3.2 23 272-296 18-40 (40)
201 KOG0294 WD40 repeat-containing 60.7 1.2E+02 0.0027 26.9 15.7 94 102-216 29-125 (362)
202 KOG0647 mRNA export protein (c 60.7 1.2E+02 0.0026 26.8 12.7 131 148-295 95-228 (347)
203 PF09910 DUF2139: Uncharacteri 60.3 1.2E+02 0.0027 26.8 20.1 137 146-297 77-232 (339)
204 KOG1036 Mitotic spindle checkp 59.3 1.3E+02 0.0028 26.7 15.7 158 94-284 37-197 (323)
205 KOG0263 Transcription initiati 58.8 1.1E+02 0.0024 30.5 10.1 61 227-295 588-649 (707)
206 PRK10115 protease 2; Provision 57.8 2.2E+02 0.0047 28.9 17.1 119 129-261 279-403 (686)
207 PF09910 DUF2139: Uncharacteri 57.4 1.4E+02 0.003 26.5 10.1 103 244-358 78-194 (339)
208 KOG0294 WD40 repeat-containing 56.7 1.5E+02 0.0032 26.5 10.6 88 206-304 29-122 (362)
209 KOG0263 Transcription initiati 56.3 1.2E+02 0.0026 30.3 9.9 90 148-253 558-650 (707)
210 KOG2502 Tub family proteins [G 55.2 13 0.00028 33.3 3.1 39 25-63 43-89 (355)
211 KOG0299 U3 snoRNP-associated p 54.9 1.9E+02 0.0041 27.2 15.6 143 123-297 207-358 (479)
212 KOG0285 Pleiotropic regulator 54.8 1.7E+02 0.0037 26.7 16.2 205 93-341 174-387 (460)
213 KOG3545 Olfactomedin and relat 53.2 1.5E+02 0.0032 25.5 16.0 177 148-356 11-211 (249)
214 COG0823 TolB Periplasmic compo 52.6 2.1E+02 0.0045 27.0 13.1 105 194-304 260-368 (425)
215 KOG4341 F-box protein containi 51.8 9.3 0.0002 35.2 1.7 39 26-64 71-109 (483)
216 KOG4649 PQQ (pyrrolo-quinoline 51.1 1.7E+02 0.0036 25.5 12.3 126 180-328 24-153 (354)
217 KOG0643 Translation initiation 50.8 1.7E+02 0.0037 25.5 15.4 170 148-331 75-252 (327)
218 COG4447 Uncharacterized protei 50.8 1.8E+02 0.0038 25.7 9.3 143 169-331 45-190 (339)
219 KOG0271 Notchless-like WD40 re 50.1 2.1E+02 0.0045 26.3 14.4 147 124-296 121-277 (480)
220 KOG1898 Splicing factor 3b, su 49.3 3.5E+02 0.0075 28.7 14.7 168 145-324 851-1031(1205)
221 KOG0305 Anaphase promoting com 48.7 2.5E+02 0.0055 26.9 17.5 175 93-297 198-378 (484)
222 KOG0308 Conserved WD40 repeat- 48.7 2.7E+02 0.0058 27.6 10.7 67 127-207 127-204 (735)
223 KOG4378 Nuclear protein COP1 [ 47.5 2.6E+02 0.0057 26.7 11.5 52 245-300 188-244 (673)
224 PF15492 Nbas_N: Neuroblastoma 45.0 2.1E+02 0.0047 25.0 10.9 37 322-360 158-194 (282)
225 KOG1897 Damage-specific DNA bi 44.5 4E+02 0.0087 28.0 17.4 141 179-331 787-932 (1096)
226 KOG0268 Sof1-like rRNA process 44.5 1.5E+02 0.0032 27.0 7.9 68 228-304 284-352 (433)
227 COG0823 TolB Periplasmic compo 43.8 2.9E+02 0.0062 26.1 16.2 150 92-261 218-368 (425)
228 KOG0306 WD40-repeat-containing 43.7 3.6E+02 0.0079 27.3 13.8 51 227-285 519-571 (888)
229 PF03088 Str_synth: Strictosid 42.4 48 0.001 23.4 3.8 53 242-295 35-87 (89)
230 KOG0293 WD40 repeat-containing 41.1 3E+02 0.0066 25.6 14.3 151 122-300 316-475 (519)
231 COG4880 Secreted protein conta 40.8 3.2E+02 0.0068 25.7 13.4 184 91-304 405-599 (603)
232 PF13088 BNR_2: BNR repeat-lik 40.5 2.4E+02 0.0052 24.3 18.6 222 100-327 28-275 (275)
233 KOG0293 WD40 repeat-containing 40.1 3.1E+02 0.0068 25.5 15.9 134 148-302 292-430 (519)
234 KOG0318 WD40 repeat stress pro 39.8 3.6E+02 0.0077 26.0 14.3 131 178-331 454-592 (603)
235 KOG0274 Cdc4 and related F-box 39.2 3.8E+02 0.0083 26.3 21.0 159 148-331 312-472 (537)
236 smart00564 PQQ beta-propeller 37.9 66 0.0014 17.1 4.1 26 225-257 4-31 (33)
237 KOG0639 Transducin-like enhanc 37.7 3.8E+02 0.0082 25.8 11.9 66 178-256 476-543 (705)
238 PF07433 DUF1513: Protein of u 37.4 3E+02 0.0066 24.6 19.8 129 119-257 6-151 (305)
239 KOG0318 WD40 repeat stress pro 37.0 3.9E+02 0.0085 25.8 15.6 110 125-255 450-563 (603)
240 KOG1273 WD40 repeat protein [G 36.5 3.2E+02 0.0069 24.6 12.2 62 129-207 34-98 (405)
241 KOG3881 Uncharacterized conser 36.1 3.5E+02 0.0076 24.9 11.5 106 179-298 161-280 (412)
242 PF15525 DUF4652: Domain of un 35.9 2.5E+02 0.0053 23.1 10.7 74 143-216 84-160 (200)
243 KOG0640 mRNA cleavage stimulat 35.5 3.3E+02 0.0071 24.4 9.3 92 196-297 238-337 (430)
244 KOG1523 Actin-related protein 35.0 3.4E+02 0.0073 24.4 9.6 97 195-299 31-135 (361)
245 PF08662 eIF2A: Eukaryotic tra 34.4 2.6E+02 0.0056 22.9 9.4 65 129-206 71-135 (194)
246 KOG0308 Conserved WD40 repeat- 34.2 1E+02 0.0022 30.3 5.6 64 227-297 129-203 (735)
247 KOG0282 mRNA splicing factor [ 34.2 4.2E+02 0.009 25.2 10.2 23 129-158 311-333 (503)
248 PF08662 eIF2A: Eukaryotic tra 33.9 2.6E+02 0.0057 22.8 9.9 65 178-254 71-135 (194)
249 PF01011 PQQ: PQQ enzyme repea 33.8 92 0.002 17.5 3.6 16 244-259 10-27 (38)
250 COG3386 Gluconolactonase [Carb 33.6 3.5E+02 0.0076 24.2 12.6 137 147-296 47-194 (307)
251 PF09372 PRANC: PRANC domain; 33.3 28 0.0006 24.9 1.5 26 24-49 69-94 (97)
252 PF03022 MRJP: Major royal jel 31.6 3.7E+02 0.0079 23.8 9.2 99 77-182 11-124 (287)
253 COG4880 Secreted protein conta 31.5 4.5E+02 0.0097 24.8 12.6 99 144-252 403-503 (603)
254 PF15525 DUF4652: Domain of un 31.0 3E+02 0.0065 22.6 9.5 76 91-169 87-162 (200)
255 PF11768 DUF3312: Protein of u 30.6 5.2E+02 0.011 25.2 9.9 93 145-256 234-333 (545)
256 KOG0272 U4/U6 small nuclear ri 30.3 4.6E+02 0.01 24.5 13.7 64 227-297 272-335 (459)
257 KOG0279 G protein beta subunit 30.1 3.8E+02 0.0083 23.6 16.2 165 148-331 39-212 (315)
258 KOG0295 WD40 repeat-containing 29.5 4.5E+02 0.0097 24.1 17.5 91 228-333 304-397 (406)
259 KOG0647 mRNA export protein (c 27.3 4.5E+02 0.0098 23.5 12.4 71 227-308 83-156 (347)
260 KOG0646 WD40 repeat protein [G 27.2 5.4E+02 0.012 24.3 14.4 51 129-188 91-144 (476)
261 KOG0299 U3 snoRNP-associated p 26.5 5.6E+02 0.012 24.2 11.6 104 174-294 209-315 (479)
262 KOG1897 Damage-specific DNA bi 26.3 8E+02 0.017 26.0 15.9 141 130-284 787-932 (1096)
263 KOG1517 Guanine nucleotide bin 26.1 8.4E+02 0.018 26.2 13.0 169 177-365 1075-1264(1387)
264 PF11768 DUF3312: Protein of u 25.5 6.4E+02 0.014 24.6 9.7 108 179-297 219-331 (545)
265 KOG0640 mRNA cleavage stimulat 25.2 5E+02 0.011 23.3 12.4 146 89-255 235-386 (430)
266 KOG3669 Uncharacterized conser 24.6 6.8E+02 0.015 24.6 14.3 148 198-359 210-373 (705)
267 PF13859 BNR_3: BNR repeat-lik 23.8 5.4E+02 0.012 23.1 12.2 176 129-304 8-215 (310)
268 COG1770 PtrB Protease II [Amin 23.4 7.7E+02 0.017 24.8 20.1 152 146-302 199-355 (682)
269 KOG0271 Notchless-like WD40 re 23.3 6.1E+02 0.013 23.5 10.7 90 227-331 168-265 (480)
270 COG2706 3-carboxymuconate cycl 22.8 5.9E+02 0.013 23.2 26.1 162 129-304 51-232 (346)
271 KOG4499 Ca2+-binding protein R 22.6 5E+02 0.011 22.4 8.0 37 271-308 218-254 (310)
272 PF03022 MRJP: Major royal jel 22.5 5.4E+02 0.012 22.7 20.8 195 128-333 10-257 (287)
273 KOG1565 Gelatinase A and relat 22.3 6.1E+02 0.013 24.4 8.6 97 177-295 343-452 (469)
274 KOG0279 G protein beta subunit 22.3 5.5E+02 0.012 22.7 16.5 176 124-330 69-251 (315)
275 COG4447 Uncharacterized protei 21.5 5.8E+02 0.013 22.6 12.9 193 129-358 54-254 (339)
276 PF14157 YmzC: YmzC-like prote 21.3 2.2E+02 0.0048 18.5 3.8 30 274-303 28-57 (63)
277 KOG0301 Phospholipase A2-activ 20.4 8.9E+02 0.019 24.4 9.2 50 272-330 227-277 (745)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.5e-45 Score=346.79 Aligned_cols=318 Identities=25% Similarity=0.400 Sum_probs=257.0
Q ss_pred CCCCCChHHHHHhhccCCcc----chhhhhhhcHhHHhhccCch---hhHhhhhccCCCCEEEEEEecCC--CCceeEEE
Q 017349 26 LIPGLPDEIGELCLLHVPYP----YQALVRSVSYSWNKAITDPG---FALCKKSLSLSLPYLFIFSFHKP--TARIQWQA 96 (373)
Q Consensus 26 ~~~~LP~dl~~~il~rlp~~----~l~~~~~v~k~W~~l~~~~~---~~~~~~~~~~~~~~l~~~gg~~~--~~~~~~~~ 96 (373)
-+|-||+..+.++....+.. ....+-.-.|+|+.+..... ..+.+.+. ...+.||++||... .....+..
T Consensus 227 r~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~-~~~~~l~~vGG~~~~~~~~~~ve~ 305 (571)
T KOG4441|consen 227 RLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRR-SVSGKLVAVGGYNRQGQSLRSVEC 305 (571)
T ss_pred CccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCc-CCCCeEEEECCCCCCCcccceeEE
Confidence 34778888777777666521 11112222335555533221 11111111 45788999999664 55677899
Q ss_pred eeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeE
Q 017349 97 LDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGN 176 (373)
Q Consensus 97 ~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 176 (373)
|||.++.|..+++||.++ ..++++++ +++||++||.+. +...++.+++||+.+++|+.+++|+.+|..+++++
T Consensus 306 yd~~~~~w~~~a~m~~~r----~~~~~~~~--~~~lYv~GG~~~-~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 306 YDPKTNEWSSLAPMPSPR----CRVGVAVL--NGKLYVVGGYDS-GSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV 378 (571)
T ss_pred ecCCcCcEeecCCCCccc----ccccEEEE--CCEEEEEccccC-CCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence 999999999999999554 67888888 999999999963 34678899999999999999999999999999999
Q ss_pred eCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCce
Q 017349 177 VNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTW 256 (373)
Q Consensus 177 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W 256 (373)
++|.||++||.+ +...++++|+|||.+++|..+++|+.+|+++++++++|+||++||.+.....++++++||+.+++|
T Consensus 379 l~g~iYavGG~d--g~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W 456 (571)
T KOG4441|consen 379 LDGKLYAVGGFD--GEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW 456 (571)
T ss_pred ECCEEEEEeccc--cccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce
Confidence 999999999998 888899999999999999999999999999999999999999999986666889999999999999
Q ss_pred eecccCccCCcceEE-EEECCeEEEEeeCC----CcceEEEeCCCCceeeecCCCCCCcccccceEEEEeCCEEEEEeCC
Q 017349 257 NLMSDGMKEGWTGIS-IVLEGKLFVISEHG----DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSG 331 (373)
Q Consensus 257 ~~~~~~~~~~~~~~~-~~~~~~l~v~gg~~----~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~ 331 (373)
+.+++ +..++.+++ ++++++||++||.+ ..++++||+++++|+.+..|+.+ +...+++..+++||++||.
T Consensus 457 ~~~~~-M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~----rs~~g~~~~~~~ly~vGG~ 531 (571)
T KOG4441|consen 457 TLIAP-MNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP----RSAVGVVVLGGKLYAVGGF 531 (571)
T ss_pred eecCC-cccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc----cccccEEEECCEEEEEecc
Confidence 99997 655555554 89999999999976 34589999999999999888888 8899999999999999995
Q ss_pred cee-eeeEEEEeecCCcccceEEecCCCCc
Q 017349 332 LNV-AIGRVYEEQNGGISAEWKVMTAPRAF 360 (373)
Q Consensus 332 ~~~-~~~~~~~~~~d~~~~~W~~~~~p~~~ 360 (373)
... ....+.. ||+++++|+....|...
T Consensus 532 ~~~~~l~~ve~--ydp~~d~W~~~~~~~~~ 559 (571)
T KOG4441|consen 532 DGNNNLNTVEC--YDPETDTWTEVTEPESG 559 (571)
T ss_pred cCccccceeEE--cCCCCCceeeCCCcccc
Confidence 432 3344444 99999999998774433
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=6e-42 Score=326.30 Aligned_cols=261 Identities=14% Similarity=0.260 Sum_probs=215.0
Q ss_pred CEEEEEEecCCCCceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCC
Q 017349 78 PYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTN 157 (373)
Q Consensus 78 ~~l~~~gg~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~ 157 (373)
..+++.||........+++||+.+++|..+++||.++ ..++++++ +++||++||..... ...+++++||+.++
T Consensus 258 ~~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~r----~~~~~a~l--~~~IYviGG~~~~~-~~~~~v~~Yd~~~n 330 (557)
T PHA02713 258 LCLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNHI----INYASAIV--DNEIIIAGGYNFNN-PSLNKVYKINIENK 330 (557)
T ss_pred eEEEEecCccccCCCCEEEEeCCCCeEEECCCCCccc----cceEEEEE--CCEEEEEcCCCCCC-CccceEEEEECCCC
Confidence 3455544421112235789999999999999999554 56777777 99999999974222 34678999999999
Q ss_pred ceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEECCEEEEEeCcc
Q 017349 158 QWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWT 237 (373)
Q Consensus 158 ~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~ 237 (373)
+|..+++|+.+|..++++.++++||++||.+ +...++++++|||.+++|..+++||.+|..+++++++|+||++||.+
T Consensus 331 ~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~--~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~ 408 (557)
T PHA02713 331 IHVELPPMIKNRCRFSLAVIDDTIYAIGGQN--GTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRT 408 (557)
T ss_pred eEeeCCCCcchhhceeEEEECCEEEEECCcC--CCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCC
Confidence 9999999999999999999999999999986 55567889999999999999999999999999999999999999976
Q ss_pred CCC-----------------ccCCceEEEeCCCCceeecccCccCCcceEE-EEECCeEEEEeeCC-----CcceEEEeC
Q 017349 238 WPF-----------------MFSPRGGVYDINKDTWNLMSDGMKEGWTGIS-IVLEGKLFVISEHG-----DCPMKQYNP 294 (373)
Q Consensus 238 ~~~-----------------~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~v~gg~~-----~~~~~~yd~ 294 (373)
... ...+.+++||+++++|+.+++ ++.++..++ ++++|+||++||.+ ...+++|||
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~-m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp 487 (557)
T PHA02713 409 EHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN-FWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNT 487 (557)
T ss_pred cccccccccccccccccccccccceEEEECCCCCeEeecCC-CCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecC
Confidence 321 125789999999999999986 555554444 88999999999964 135789999
Q ss_pred CC-CceeeecCCCCCCcccccceEEEEeCCEEEEEeCCceeeeeEEEEeecCCcccceEEecC
Q 017349 295 DD-DTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEEQNGGISAEWKVMTA 356 (373)
Q Consensus 295 ~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~W~~~~~ 356 (373)
++ ++|+.++.||.+ +..++++.++|+||++||.... ..+ +.||+++++|+.+..
T Consensus 488 ~~~~~W~~~~~m~~~----r~~~~~~~~~~~iyv~Gg~~~~--~~~--e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 488 NTYNGWELITTTESR----LSALHTILHDNTIMMLHCYESY--MLQ--DTFNVYTYEWNHICH 542 (557)
T ss_pred CCCCCeeEccccCcc----cccceeEEECCEEEEEeeecce--eeh--hhcCcccccccchhh
Confidence 99 899999988888 8899999999999999996442 233 459999999997755
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1e-38 Score=302.72 Aligned_cols=249 Identities=26% Similarity=0.513 Sum_probs=215.2
Q ss_pred CccchhhhhhhcHhHHhhccCchhhHhhhhccCCCCEEEEEEecCC--CCceeEEEeeCCCCCeeeCCCCCCCCCCCCCc
Q 017349 43 PYPYQALVRSVSYSWNKAITDPGFALCKKSLSLSLPYLFIFSFHKP--TARIQWQALDPRSGRWFVLPPMPCPKAVCPQA 120 (373)
Q Consensus 43 p~~~l~~~~~v~k~W~~l~~~~~~~~~~~~~~~~~~~l~~~gg~~~--~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~ 120 (373)
+......+....+.|..+...|. .+.+...+..++.||++||.+. .....+++|||.+++|..+++|..++ ..
T Consensus 299 ~~~~ve~yd~~~~~w~~~a~m~~-~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R----~~ 373 (571)
T KOG4441|consen 299 SLRSVECYDPKTNEWSSLAPMPS-PRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR----SD 373 (571)
T ss_pred ccceeEEecCCcCcEeecCCCCc-ccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc----cc
Confidence 34556667777778988876662 2235556667999999999762 45577999999999999999999554 88
Q ss_pred eEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCC-cCceEE
Q 017349 121 FACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINE-TMTAVE 199 (373)
Q Consensus 121 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~-~~~~~~ 199 (373)
++++++ +|.||++||.+ +....+++++|||.+++|..+++|+.+|..+++++++++||++||.+ +.. .+++++
T Consensus 374 ~~v~~l--~g~iYavGG~d--g~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~--~~~~~l~sve 447 (571)
T KOG4441|consen 374 FGVAVL--DGKLYAVGGFD--GEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGD--GSSNCLNSVE 447 (571)
T ss_pred ceeEEE--CCEEEEEeccc--cccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcC--CCccccceEE
Confidence 999998 99999999996 44678899999999999999999999999999999999999999997 444 899999
Q ss_pred EEeCCCCeEEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEE-EEECCeE
Q 017349 200 CYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGIS-IVLEGKL 278 (373)
Q Consensus 200 ~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l 278 (373)
+|||.+++|+.+++|+.+|.++++++++++||++||+++ ......+++||+.+++|+.+.+ +..++.... ++.+++|
T Consensus 448 ~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~~W~~v~~-m~~~rs~~g~~~~~~~l 525 (571)
T KOG4441|consen 448 CYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDG-TSALSSVERYDPETNQWTMVAP-MTSPRSAVGVVVLGGKL 525 (571)
T ss_pred EEcCCCCceeecCCcccccccceEEEECCEEEEECCccC-CCccceEEEEcCCCCceeEccc-CccccccccEEEECCEE
Confidence 999999999999999999999999999999999999986 5556779999999999999975 555555544 8899999
Q ss_pred EEEeeCC----CcceEEEeCCCCceeeecC
Q 017349 279 FVISEHG----DCPMKQYNPDDDTWRYVGG 304 (373)
Q Consensus 279 ~v~gg~~----~~~~~~yd~~~~~W~~~~~ 304 (373)
|++||.+ ...+..|||++++|+....
T Consensus 526 y~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 526 YAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred EEEecccCccccceeEEcCCCCCceeeCCC
Confidence 9999976 5789999999999999986
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.9e-37 Score=296.61 Aligned_cols=253 Identities=18% Similarity=0.296 Sum_probs=210.2
Q ss_pred eEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceee
Q 017349 93 QWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFF 172 (373)
Q Consensus 93 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~ 172 (373)
....|++.+++|..+++++. . ..++++++ ++.||++||..... ...+++++||+.+++|..+++|+.+|..+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~--~~~lyv~GG~~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~R~~~ 336 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHY-V----YCFGSVVL--NNVIYFIGGMNKNN-LSVNSVVSYDTKTKSWNKVPELIYPRKNP 336 (534)
T ss_pred eeeecchhhhhcccccCccc-c----ccceEEEE--CCEEEEECCCcCCC-CeeccEEEEeCCCCeeeECCCCCcccccc
Confidence 45578888999998876662 2 34677777 99999999986433 34578999999999999999999999999
Q ss_pred eeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCC
Q 017349 173 ASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDIN 252 (373)
Q Consensus 173 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~ 252 (373)
+++.++++||++||.+ .....+++++||+.+++|+.++++|.+|..++++.++++||++||........+.+++||+.
T Consensus 337 ~~~~~~~~lyv~GG~~--~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~ 414 (534)
T PHA03098 337 GVTVFNNRIYVIGGIY--NSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLN 414 (534)
T ss_pred eEEEECCEEEEEeCCC--CCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCC
Confidence 9999999999999986 55567899999999999999999999999999999999999999976555556889999999
Q ss_pred CCceeecccCccCCcceEE-EEECCeEEEEeeCCC-------cceEEEeCCCCceeeecCCCCCCcccccceEEEEeCCE
Q 017349 253 KDTWNLMSDGMKEGWTGIS-IVLEGKLFVISEHGD-------CPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGK 324 (373)
Q Consensus 253 ~~~W~~~~~~~~~~~~~~~-~~~~~~l~v~gg~~~-------~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (373)
+++|+.+++ ++.++.+++ ++.+++||++||... ..+++||+++++|+.++.++.| +..++++..+++
T Consensus 415 t~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~----r~~~~~~~~~~~ 489 (534)
T PHA03098 415 TNKWSKGSP-LPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP----RINASLCIFNNK 489 (534)
T ss_pred CCeeeecCC-CCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc----cccceEEEECCE
Confidence 999999876 555554444 788999999999641 3489999999999999987777 677888889999
Q ss_pred EEEEeCCceee-eeEEEEeecCCcccceEEecCCCCcCc
Q 017349 325 IYVVSSGLNVA-IGRVYEEQNGGISAEWKVMTAPRAFKD 362 (373)
Q Consensus 325 l~i~GG~~~~~-~~~~~~~~~d~~~~~W~~~~~p~~~~~ 362 (373)
|||+||..... ...++. ||+++++|+.++.++++-+
T Consensus 490 iyv~GG~~~~~~~~~v~~--yd~~~~~W~~~~~~p~~~~ 526 (534)
T PHA03098 490 IYVVGGDKYEYYINEIEV--YDDKTNTWTLFCKFPKVIG 526 (534)
T ss_pred EEEEcCCcCCcccceeEE--EeCCCCEEEecCCCccccc
Confidence 99999975432 334444 9999999999987666543
No 5
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.4e-36 Score=275.33 Aligned_cols=243 Identities=19% Similarity=0.273 Sum_probs=190.6
Q ss_pred CCCCCeeeCCC----CCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCC-Ccce---
Q 017349 99 PRSGRWFVLPP----MPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPML-TPRS--- 170 (373)
Q Consensus 99 ~~~~~W~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~r~--- 170 (373)
+...+|..+.. +|.++ ..++++++ +++|||+||.........+++++||+.+++|+.+++++ .+|.
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR----~~h~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~ 77 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPR----CSHGIAVV--GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCL 77 (341)
T ss_pred ccCCeEEEecCCCCCCCCCC----CcceEEEE--CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccC
Confidence 36678998876 55333 67777777 89999999985433234578999999999999988764 3443
Q ss_pred eeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCC-----ccccccccEEEECCEEEEEeCccCCC-----
Q 017349 171 FFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKL-----RMGLARYDSAVMGSKMYVTEGWTWPF----- 240 (373)
Q Consensus 171 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~-----~~~~~~~~~~~~~~~lyv~gG~~~~~----- 240 (373)
.++++.++++||++||.+ ....++++++||+.+++|+.+++| |.+|..|++++.+++||++||.....
T Consensus 78 ~~~~~~~~~~iyv~GG~~--~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~ 155 (341)
T PLN02153 78 GVRMVAVGTKLYIFGGRD--EKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTP 155 (341)
T ss_pred ceEEEEECCEEEEECCCC--CCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCC
Confidence 678899999999999986 455678999999999999999877 78899999999999999999986321
Q ss_pred ccCCceEEEeCCCCceeecccC--ccCCcceE-EEEECCeEEEEeeCC------------CcceEEEeCCCCceeeecC-
Q 017349 241 MFSPRGGVYDINKDTWNLMSDG--MKEGWTGI-SIVLEGKLFVISEHG------------DCPMKQYNPDDDTWRYVGG- 304 (373)
Q Consensus 241 ~~~~~i~~yd~~~~~W~~~~~~--~~~~~~~~-~~~~~~~l~v~gg~~------------~~~~~~yd~~~~~W~~~~~- 304 (373)
...+.+++||+++++|+.++.+ .+.++.++ +++++++||++||.. .+.+++||+++++|+.++.
T Consensus 156 ~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 156 ERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETT 235 (341)
T ss_pred cccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEecccc
Confidence 1346799999999999998752 12344444 378899999998742 3579999999999999875
Q ss_pred --CCCCCcccccceEEEEeCCEEEEEeCCcee----------eeeEEEEeecCCcccceEEec
Q 017349 305 --DKFPCEVMHRPFAVNGVEGKIYVVSSGLNV----------AIGRVYEEQNGGISAEWKVMT 355 (373)
Q Consensus 305 --~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~----------~~~~~~~~~~d~~~~~W~~~~ 355 (373)
+|.+ |..++++.++++|||+||.... ..+++|. ||+++++|+.+.
T Consensus 236 g~~P~~----r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~--~d~~~~~W~~~~ 292 (341)
T PLN02153 236 GAKPSA----RSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYA--LDTETLVWEKLG 292 (341)
T ss_pred CCCCCC----cceeeeEEECCEEEEECcccCCccccccccccccccEEE--EEcCccEEEecc
Confidence 3444 7788999999999999996321 1224444 999999999874
No 6
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=9.3e-37 Score=276.45 Aligned_cols=282 Identities=13% Similarity=0.212 Sum_probs=203.5
Q ss_pred hHHhhccCc---hhhHhhhhccCCCCEEEEEEecCC---CCceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccC
Q 017349 56 SWNKAITDP---GFALCKKSLSLSLPYLFIFSFHKP---TARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQ 129 (373)
Q Consensus 56 ~W~~l~~~~---~~~~~~~~~~~~~~~l~~~gg~~~---~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (373)
+|..+.... .-.+..+.+...++.||++||... ...+++++||+.+++|..+++++..++..+..++++++ +
T Consensus 8 ~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~ 85 (341)
T PLN02153 8 GWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--G 85 (341)
T ss_pred eEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--C
Confidence 477765421 122333445556899999999632 12357999999999999998775322222235666666 9
Q ss_pred CEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCC-----CCcceeeeeeEeCCeEEEEcCCCCCC----CCcCceEEE
Q 017349 130 GKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPM-----LTPRSFFASGNVNGKIMAVGGTGANI----NETMTAVEC 200 (373)
Q Consensus 130 ~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~-----~~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~~~ 200 (373)
++||++||.... ...+++++||+.+++|+.++++ |.+|..|+++..+++||++||.+... ...++++++
T Consensus 86 ~~iyv~GG~~~~--~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 86 TKLYIFGGRDEK--REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CEEEEECCCCCC--CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEE
Confidence 999999998533 3567999999999999999877 78899999999999999999985211 123578999
Q ss_pred EeCCCCeEEeccCCc---cccccccEEEECCEEEEEeCccCC-------CccCCceEEEeCCCCceeeccc--CccCCcc
Q 017349 201 YDPESDTWTTAAKLR---MGLARYDSAVMGSKMYVTEGWTWP-------FMFSPRGGVYDINKDTWNLMSD--GMKEGWT 268 (373)
Q Consensus 201 yd~~t~~W~~~~~~~---~~~~~~~~~~~~~~lyv~gG~~~~-------~~~~~~i~~yd~~~~~W~~~~~--~~~~~~~ 268 (373)
||+.+++|+.++.+. .+|..+++++++++||++||.... ....+.+++||+.+++|++++. .+|.++.
T Consensus 164 yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~ 243 (341)
T PLN02153 164 YNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS 243 (341)
T ss_pred EECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc
Confidence 999999999998654 678888899999999999986421 1225789999999999999864 2344554
Q ss_pred eEE-EEECCeEEEEeeCC-------------CcceEEEeCCCCceeeecCC---CCCCcccccceEEEEeCCEEEEEeCC
Q 017349 269 GIS-IVLEGKLFVISEHG-------------DCPMKQYNPDDDTWRYVGGD---KFPCEVMHRPFAVNGVEGKIYVVSSG 331 (373)
Q Consensus 269 ~~~-~~~~~~l~v~gg~~-------------~~~~~~yd~~~~~W~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~GG~ 331 (373)
.++ ++++++|||+||.. .+++++||+++++|+.+... +.|+.......+.+..+++|||+||.
T Consensus 244 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~ 323 (341)
T PLN02153 244 VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGK 323 (341)
T ss_pred eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCc
Confidence 444 78899999999962 24799999999999998642 34422111222333445689999997
Q ss_pred cee--eeeEEEE
Q 017349 332 LNV--AIGRVYE 341 (373)
Q Consensus 332 ~~~--~~~~~~~ 341 (373)
.+. ...+++.
T Consensus 324 ~~~~~~~~~~~~ 335 (341)
T PLN02153 324 LPTNERTDDLYF 335 (341)
T ss_pred CCCCccccceEE
Confidence 543 3344443
No 7
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.5e-35 Score=278.00 Aligned_cols=271 Identities=13% Similarity=0.170 Sum_probs=206.0
Q ss_pred CCCEEEEEEecCCCCcee--EEEeeCCC----CCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCccee
Q 017349 76 SLPYLFIFSFHKPTARIQ--WQALDPRS----GRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQST 149 (373)
Q Consensus 76 ~~~~l~~~gg~~~~~~~~--~~~~d~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~ 149 (373)
.++.|+.|+|........ .+.+++.+ ++|..+.++...+ ..|..|+++++ ++.||++||.........+++
T Consensus 119 ~~~~ivgf~G~~~~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P-~pR~~h~~~~~--~~~iyv~GG~~~~~~~~~~~v 195 (470)
T PLN02193 119 QGGKIVGFHGRSTDVLHSLGAYISLPSTPKLLGKWIKVEQKGEGP-GLRCSHGIAQV--GNKIYSFGGEFTPNQPIDKHL 195 (470)
T ss_pred cCCeEEEEeccCCCcEEeeEEEEecCCChhhhceEEEcccCCCCC-CCccccEEEEE--CCEEEEECCcCCCCCCeeCcE
Confidence 367777777744433333 45557655 8999987642111 23477888887 899999999853332344689
Q ss_pred EEEeCCCCceeccCCC---CC-cceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCC---cccccccc
Q 017349 150 IMYRATTNQWQLASPM---LT-PRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKL---RMGLARYD 222 (373)
Q Consensus 150 ~~yd~~t~~W~~~~~~---~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~---~~~~~~~~ 222 (373)
++||+.+++|+.++.+ |. .|..++++.++++||++||.+ ....++++++||+.+++|++++++ |.+|..|+
T Consensus 196 ~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~--~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~ 273 (470)
T PLN02193 196 YVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRD--ASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS 273 (470)
T ss_pred EEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCC--CCCCCccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence 9999999999987643 33 356788899999999999986 555678999999999999999887 78899999
Q ss_pred EEEECCEEEEEeCccCCCccCCceEEEeCCCCceeecccC--ccCCcceEE-EEECCeEEEEeeCC---CcceEEEeCCC
Q 017349 223 SAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDG--MKEGWTGIS-IVLEGKLFVISEHG---DCPMKQYNPDD 296 (373)
Q Consensus 223 ~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~--~~~~~~~~~-~~~~~~l~v~gg~~---~~~~~~yd~~~ 296 (373)
++..+++||++||... ....+.+++||+.+++|+.++.+ ++..+.+++ ++++++||++||.. ..++++||+++
T Consensus 274 ~~~~~~~iYv~GG~~~-~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t 352 (470)
T PLN02193 274 MAADEENVYVFGGVSA-TARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQ 352 (470)
T ss_pred EEEECCEEEEECCCCC-CCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCC
Confidence 9999999999999863 34567899999999999988652 333444443 77899999999864 36899999999
Q ss_pred CceeeecCCCCCCcccccceEEEEeCCEEEEEeCCcee----------eeeEEEEeecCCcccceEEec
Q 017349 297 DTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNV----------AIGRVYEEQNGGISAEWKVMT 355 (373)
Q Consensus 297 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~----------~~~~~~~~~~d~~~~~W~~~~ 355 (373)
++|+.+..++.. +..|..++++.++++|||+||.... ..+++ +.||+++++|+.++
T Consensus 353 ~~W~~~~~~g~~-P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv--~~~D~~t~~W~~~~ 418 (470)
T PLN02193 353 DKWTQVETFGVR-PSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGT--FALDTETLQWERLD 418 (470)
T ss_pred CEEEEeccCCCC-CCCcceeEEEEECCEEEEECCccCCccccccCccceeccE--EEEEcCcCEEEEcc
Confidence 999999764221 1227788999999999999997431 11233 45999999999875
No 8
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=295.88 Aligned_cols=247 Identities=14% Similarity=0.215 Sum_probs=200.8
Q ss_pred hhhhhhcHhHHhhccCchhhHhhhhccCCCCEEEEEEecC--CCCceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEE
Q 017349 48 ALVRSVSYSWNKAITDPGFALCKKSLSLSLPYLFIFSFHK--PTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTS 125 (373)
Q Consensus 48 ~~~~~v~k~W~~l~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~ 125 (373)
..+....++|..+...|.- +.....+..++.||++||.. ......++.|||.+++|..+++|+.++ ..+++++
T Consensus 275 ~~yd~~~~~W~~l~~mp~~-r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R----~~~~~~~ 349 (557)
T PHA02713 275 LVYNINTMEYSVISTIPNH-IINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNR----CRFSLAV 349 (557)
T ss_pred EEEeCCCCeEEECCCCCcc-ccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchh----hceeEEE
Confidence 3455556688887665532 22344556689999999953 223467899999999999999999554 6778888
Q ss_pred eccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCC--------------
Q 017349 126 LPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANI-------------- 191 (373)
Q Consensus 126 ~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-------------- 191 (373)
+ +++||++||.++. ...+++++|||.+++|+.+++||.+|..+++++++++||++||.+...
T Consensus 350 ~--~g~IYviGG~~~~--~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 350 I--DDTIYAIGGQNGT--NVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred E--CCEEEEECCcCCC--CCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccc
Confidence 8 9999999998532 346789999999999999999999999999999999999999985210
Q ss_pred --CCcCceEEEEeCCCCeEEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCC-CceeecccCccCCcc
Q 017349 192 --NETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINK-DTWNLMSDGMKEGWT 268 (373)
Q Consensus 192 --~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~-~~W~~~~~~~~~~~~ 268 (373)
...++++++|||.+++|+.+++|+.+|..+++++++|+||++||.++.......+++||+.+ ++|+.+++ ++.++.
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~-m~~~r~ 504 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT-TESRLS 504 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc-cCcccc
Confidence 11367899999999999999999999999999999999999999864333345689999999 89999986 665655
Q ss_pred eEE-EEECCeEEEEeeCC-CcceEEEeCCCCceeeecC
Q 017349 269 GIS-IVLEGKLFVISEHG-DCPMKQYNPDDDTWRYVGG 304 (373)
Q Consensus 269 ~~~-~~~~~~l~v~gg~~-~~~~~~yd~~~~~W~~~~~ 304 (373)
... ++++|+||++||.+ ...+++||+.+++|+.+..
T Consensus 505 ~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 505 ALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred cceeEEECCEEEEEeeecceeehhhcCcccccccchhh
Confidence 554 88999999999975 2478999999999999873
No 9
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.2e-35 Score=267.28 Aligned_cols=247 Identities=14% Similarity=0.170 Sum_probs=193.7
Q ss_pred cCCCCEEEEEEecCCCC-----------ceeEEEee-CCC-CCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccC
Q 017349 74 SLSLPYLFIFSFHKPTA-----------RIQWQALD-PRS-GRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRS 140 (373)
Q Consensus 74 ~~~~~~l~~~gg~~~~~-----------~~~~~~~d-~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~ 140 (373)
+..++.||++||.+... ..++++|+ +.. .+|..+++||.++ ..++++++ +++||++||.+.
T Consensus 10 ~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r----~~~~~~~~--~~~lyviGG~~~ 83 (323)
T TIGR03548 10 GIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEA----AYGASVSV--ENGIYYIGGSNS 83 (323)
T ss_pred eEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccc----cceEEEEE--CCEEEEEcCCCC
Confidence 44588999999954321 13567775 432 3799999999554 44556666 899999999853
Q ss_pred CCCCCcceeEEEeCCCCce----eccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCcc
Q 017349 141 DTETPMQSTIMYRATTNQW----QLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRM 216 (373)
Q Consensus 141 ~~~~~~~~~~~yd~~t~~W----~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~ 216 (373)
. ...+++++||+.+++| +.+++||.+|..+++++++++||++||.. ....++++++||+.+++|++++++|.
T Consensus 84 ~--~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~--~~~~~~~v~~yd~~~~~W~~~~~~p~ 159 (323)
T TIGR03548 84 S--ERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNR--NGKPSNKSYLFNLETQEWFELPDFPG 159 (323)
T ss_pred C--CCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcC--CCccCceEEEEcCCCCCeeECCCCCC
Confidence 2 4567999999999988 78899999999999999999999999985 44457899999999999999998875
Q ss_pred -ccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCceeecccC----ccCCcceEE--EEECCeEEEEeeCCC---
Q 017349 217 -GLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDG----MKEGWTGIS--IVLEGKLFVISEHGD--- 286 (373)
Q Consensus 217 -~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~----~~~~~~~~~--~~~~~~l~v~gg~~~--- 286 (373)
+|..+++++++++||++||.+.. ...++++||+++++|+.++.. .+..+...+ ++.+++||++||.+.
T Consensus 160 ~~r~~~~~~~~~~~iYv~GG~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~ 237 (323)
T TIGR03548 160 EPRVQPVCVKLQNELYVFGGGSNI--AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVY 237 (323)
T ss_pred CCCCcceEEEECCEEEEEcCCCCc--cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHH
Confidence 78888888999999999998632 234689999999999998752 222222222 445799999999751
Q ss_pred ---------------------------------cceEEEeCCCCceeeecCCCCCCcccccceEEEEeCCEEEEEeCCce
Q 017349 287 ---------------------------------CPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLN 333 (373)
Q Consensus 287 ---------------------------------~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~~~ 333 (373)
..+++||+.+++|+.++.+|.. .+..++++.++++||++||..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~---~r~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 238 NDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFF---ARCGAALLLTGNNIFSINGELK 314 (323)
T ss_pred HHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccccc---ccCchheEEECCEEEEEecccc
Confidence 4699999999999999866532 2778889999999999999755
Q ss_pred ee
Q 017349 334 VA 335 (373)
Q Consensus 334 ~~ 335 (373)
..
T Consensus 315 pg 316 (323)
T TIGR03548 315 PG 316 (323)
T ss_pred CC
Confidence 44
No 10
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=6.2e-35 Score=265.49 Aligned_cols=247 Identities=19% Similarity=0.236 Sum_probs=189.6
Q ss_pred cCCCCEEEEEEecCCCCceeEEEeeC--CCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCC----CCCcc
Q 017349 74 SLSLPYLFIFSFHKPTARIQWQALDP--RSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDT----ETPMQ 147 (373)
Q Consensus 74 ~~~~~~l~~~gg~~~~~~~~~~~~d~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~----~~~~~ 147 (373)
+..++.||++||.. ...+++||+ .+++|..+++||..+ +..++++++ +++||++||..... ....+
T Consensus 14 ~~~~~~vyv~GG~~---~~~~~~~d~~~~~~~W~~l~~~p~~~---R~~~~~~~~--~~~iYv~GG~~~~~~~~~~~~~~ 85 (346)
T TIGR03547 14 AIIGDKVYVGLGSA---GTSWYKLDLKKPSKGWQKIADFPGGP---RNQAVAAAI--DGKLYVFGGIGKANSEGSPQVFD 85 (346)
T ss_pred EEECCEEEEEcccc---CCeeEEEECCCCCCCceECCCCCCCC---cccceEEEE--CCEEEEEeCCCCCCCCCcceecc
Confidence 35589999999853 256889986 678999999998422 256777777 99999999985321 12467
Q ss_pred eeEEEeCCCCceeccC-CCCCcceeeeee-EeCCeEEEEcCCCCCC--C------------------------------C
Q 017349 148 STIMYRATTNQWQLAS-PMLTPRSFFASG-NVNGKIMAVGGTGANI--N------------------------------E 193 (373)
Q Consensus 148 ~~~~yd~~t~~W~~~~-~~~~~r~~~~~~-~~~~~iyv~GG~~~~~--~------------------------------~ 193 (373)
++++||+.+++|+.++ +++.+|..++++ ..+++||++||.+... . .
T Consensus 86 ~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYF 165 (346)
T ss_pred cEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcC
Confidence 8999999999999997 456667667665 6899999999985100 0 0
Q ss_pred cCceEEEEeCCCCeEEeccCCcc-ccccccEEEECCEEEEEeCccCCCccCCceEEEe--CCCCceeecccCccCCc---
Q 017349 194 TMTAVECYDPESDTWTTAAKLRM-GLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYD--INKDTWNLMSDGMKEGW--- 267 (373)
Q Consensus 194 ~~~~~~~yd~~t~~W~~~~~~~~-~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd--~~~~~W~~~~~~~~~~~--- 267 (373)
.++++++||+.+++|+.+++||. +|..+++++++++||++||..........++.|| +++++|+.++. ++.++
T Consensus 166 ~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~-m~~~r~~~ 244 (346)
T TIGR03547 166 WNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP-LPPPKSSS 244 (346)
T ss_pred ccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC-CCCCCCCc
Confidence 14789999999999999999986 6788888899999999999864333334566665 56779999876 33322
Q ss_pred ----ceE-EEEECCeEEEEeeCCC---------------------cceEEEeCCCCceeeecCCCCCCcccccceEEEEe
Q 017349 268 ----TGI-SIVLEGKLFVISEHGD---------------------CPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGV 321 (373)
Q Consensus 268 ----~~~-~~~~~~~l~v~gg~~~---------------------~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 321 (373)
.++ +++++|+||++||... ..+++||+++++|+.+..||.+ +..++++.+
T Consensus 245 ~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~----~~~~~~~~~ 320 (346)
T TIGR03547 245 QEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQG----LAYGVSVSW 320 (346)
T ss_pred cccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCC----ceeeEEEEc
Confidence 233 3678999999999631 2578999999999999988777 667778899
Q ss_pred CCEEEEEeCCce
Q 017349 322 EGKIYVVSSGLN 333 (373)
Q Consensus 322 ~~~l~i~GG~~~ 333 (373)
+++|||+||...
T Consensus 321 ~~~iyv~GG~~~ 332 (346)
T TIGR03547 321 NNGVLLIGGENS 332 (346)
T ss_pred CCEEEEEeccCC
Confidence 999999999753
No 11
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=8.1e-35 Score=273.10 Aligned_cols=279 Identities=14% Similarity=0.190 Sum_probs=205.2
Q ss_pred HhHHhhccCch--hhHhhhhccCCCCEEEEEEecCC-C--CceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccC
Q 017349 55 YSWNKAITDPG--FALCKKSLSLSLPYLFIFSFHKP-T--ARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQ 129 (373)
Q Consensus 55 k~W~~l~~~~~--~~~~~~~~~~~~~~l~~~gg~~~-~--~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (373)
.+|..+....+ ..+..+.....++.||++||... . ...++++||+.+++|..++.+...++..+..++++++ +
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~ 228 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--G 228 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--C
Confidence 57887754322 23333444556899999999532 1 2246999999999999876542111111245555666 9
Q ss_pred CEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCC---CCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCC
Q 017349 130 GKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPM---LTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESD 206 (373)
Q Consensus 130 ~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~ 206 (373)
++||++||.... ...+++++||+.+++|++++++ |.+|..|+++..+++||++||.+ ....++++++||+.++
T Consensus 229 ~~lYvfGG~~~~--~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~--~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 229 STLYVFGGRDAS--RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVS--ATARLKTLDSYNIVDK 304 (470)
T ss_pred CEEEEECCCCCC--CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCC--CCCCcceEEEEECCCC
Confidence 999999998543 4578999999999999999887 78999999999999999999986 5556789999999999
Q ss_pred eEEeccC---CccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCceeeccc--CccCCcceE-EEEECCeEEE
Q 017349 207 TWTTAAK---LRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD--GMKEGWTGI-SIVLEGKLFV 280 (373)
Q Consensus 207 ~W~~~~~---~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~--~~~~~~~~~-~~~~~~~l~v 280 (373)
+|+.++. ++.+|..+++++++++||++||..+ ...+.+++||+++++|+.++. ..|.++..+ +++++++|||
T Consensus 305 ~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g--~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv 382 (470)
T PLN02193 305 KWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNG--CEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVI 382 (470)
T ss_pred EEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCC--CccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEE
Confidence 9999864 6678888999999999999999753 235889999999999998864 124444444 4788999999
Q ss_pred EeeCC-------------CcceEEEeCCCCceeeecCCCC--CCcccccceEE--EEe--CCEEEEEeCCce--eeeeEE
Q 017349 281 ISEHG-------------DCPMKQYNPDDDTWRYVGGDKF--PCEVMHRPFAV--NGV--EGKIYVVSSGLN--VAIGRV 339 (373)
Q Consensus 281 ~gg~~-------------~~~~~~yd~~~~~W~~~~~~~~--~~~~~~~~~~~--~~~--~~~l~i~GG~~~--~~~~~~ 339 (373)
+||.. .+++++||+.+++|+.+..++. ..+..|..+++ +.+ ++.|+++||... ....++
T Consensus 383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~ 462 (470)
T PLN02193 383 FGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDL 462 (470)
T ss_pred ECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccce
Confidence 99963 1469999999999999876442 11223444432 223 345999999743 233445
Q ss_pred EE
Q 017349 340 YE 341 (373)
Q Consensus 340 ~~ 341 (373)
+.
T Consensus 463 ~~ 464 (470)
T PLN02193 463 FF 464 (470)
T ss_pred EE
Confidence 44
No 12
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.5e-34 Score=264.71 Aligned_cols=265 Identities=18% Similarity=0.240 Sum_probs=197.2
Q ss_pred ccCCCCEEEEEEecCCCCceeEEEeeCC--CCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCC----CCCc
Q 017349 73 LSLSLPYLFIFSFHKPTARIQWQALDPR--SGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDT----ETPM 146 (373)
Q Consensus 73 ~~~~~~~l~~~gg~~~~~~~~~~~~d~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~----~~~~ 146 (373)
....++.||++||... ..+++||+. +++|..++++|.++ +..++++++ +++||++||..... ....
T Consensus 34 ~~~~~~~iyv~gG~~~---~~~~~~d~~~~~~~W~~l~~~p~~~---r~~~~~v~~--~~~IYV~GG~~~~~~~~~~~~~ 105 (376)
T PRK14131 34 GAIDNNTVYVGLGSAG---TSWYKLDLNAPSKGWTKIAAFPGGP---REQAVAAFI--DGKLYVFGGIGKTNSEGSPQVF 105 (376)
T ss_pred EEEECCEEEEEeCCCC---CeEEEEECCCCCCCeEECCcCCCCC---cccceEEEE--CCEEEEEcCCCCCCCCCceeEc
Confidence 3445899999988532 358889886 47899999887432 356666777 99999999985311 1235
Q ss_pred ceeEEEeCCCCceeccCC-CCCcceeeeeeE-eCCeEEEEcCCCCCC--------------------------------C
Q 017349 147 QSTIMYRATTNQWQLASP-MLTPRSFFASGN-VNGKIMAVGGTGANI--------------------------------N 192 (373)
Q Consensus 147 ~~~~~yd~~t~~W~~~~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~~--------------------------------~ 192 (373)
+++++||+.+++|+.+++ +|.++..|+++. .+++||++||..... .
T Consensus 106 ~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~ 185 (376)
T PRK14131 106 DDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDY 185 (376)
T ss_pred ccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhc
Confidence 789999999999999985 356666777666 899999999974100 0
Q ss_pred CcCceEEEEeCCCCeEEeccCCcc-ccccccEEEECCEEEEEeCccCCCccCCceE--EEeCCCCceeecccCccCCc--
Q 017349 193 ETMTAVECYDPESDTWTTAAKLRM-GLARYDSAVMGSKMYVTEGWTWPFMFSPRGG--VYDINKDTWNLMSDGMKEGW-- 267 (373)
Q Consensus 193 ~~~~~~~~yd~~t~~W~~~~~~~~-~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~--~yd~~~~~W~~~~~~~~~~~-- 267 (373)
...+++++||+.+++|+.++++|. ++..++++.++++||++||..........++ .||+++++|+.++. ++.++
T Consensus 186 ~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~p~~~~~ 264 (376)
T PRK14131 186 FFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD-LPPAPGG 264 (376)
T ss_pred CcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC-CCCCCcC
Confidence 124789999999999999999996 6777888889999999999764443444444 45778999999876 33322
Q ss_pred ------ceE-EEEECCeEEEEeeCCC---------------------cceEEEeCCCCceeeecCCCCCCcccccceEEE
Q 017349 268 ------TGI-SIVLEGKLFVISEHGD---------------------CPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVN 319 (373)
Q Consensus 268 ------~~~-~~~~~~~l~v~gg~~~---------------------~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 319 (373)
.++ +++++++||++||... ..+++||+++++|+.++.+|.+ +..++++
T Consensus 265 ~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~----r~~~~av 340 (376)
T PRK14131 265 SSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQG----LAYGVSV 340 (376)
T ss_pred CcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCC----ccceEEE
Confidence 222 3678999999999641 1357899999999999988877 6778889
Q ss_pred EeCCEEEEEeCCce--eeeeEEEEeecCCcccceE
Q 017349 320 GVEGKIYVVSSGLN--VAIGRVYEEQNGGISAEWK 352 (373)
Q Consensus 320 ~~~~~l~i~GG~~~--~~~~~~~~~~~d~~~~~W~ 352 (373)
.++++|||+||... ....+|+. |..+.+.|.
T Consensus 341 ~~~~~iyv~GG~~~~~~~~~~v~~--~~~~~~~~~ 373 (376)
T PRK14131 341 SWNNGVLLIGGETAGGKAVSDVTL--LSWDGKKLT 373 (376)
T ss_pred EeCCEEEEEcCCCCCCcEeeeEEE--EEEcCCEEE
Confidence 99999999999643 24555655 444445544
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=2e-34 Score=271.19 Aligned_cols=205 Identities=19% Similarity=0.318 Sum_probs=175.4
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeE
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTW 208 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W 208 (373)
++.||++||.... ...+.+++|||.+++|..+++|+.+|..++++.++++||++||.+ . .+++++||+.+++|
T Consensus 271 ~~~lyviGG~~~~--~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~--~---~~sve~ydp~~n~W 343 (480)
T PHA02790 271 GEVVYLIGGWMNN--EIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLP--N---PTSVERWFHGDAAW 343 (480)
T ss_pred CCEEEEEcCCCCC--CcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcC--C---CCceEEEECCCCeE
Confidence 8999999998432 456789999999999999999999999999999999999999985 2 25689999999999
Q ss_pred EeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEE-EEECCeEEEEeeCCCc
Q 017349 209 TTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGIS-IVLEGKLFVISEHGDC 287 (373)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~v~gg~~~~ 287 (373)
..+++||.+|..+++++++|+||++||.... .+.+++||+.+++|+.+++ ++.++..++ ++++|+||++||
T Consensus 344 ~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~-m~~~r~~~~~~~~~~~IYv~GG---- 415 (480)
T PHA02790 344 VNMPSLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPS-TYYPHYKSCALVFGRRLFLVGR---- 415 (480)
T ss_pred EECCCCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCC-CCCccccceEEEECCEEEEECC----
Confidence 9999999999999999999999999997532 3678999999999999876 555554444 789999999998
Q ss_pred ceEEEeCCCCceeeecCCCCCCcccccceEEEEeCCEEEEEeCCceee-eeEEEEeecCCcccceEEe
Q 017349 288 PMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVA-IGRVYEEQNGGISAEWKVM 354 (373)
Q Consensus 288 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~-~~~~~~~~~d~~~~~W~~~ 354 (373)
..++||+++++|+.++.|+.| +..++++.++|+||++||..... ...+ +.||+++++|+..
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~~----r~~~~~~v~~~~IYviGG~~~~~~~~~v--e~Yd~~~~~W~~~ 477 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIYP----RDNPELIIVDNKLLLIGGFYRGSYIDTI--EVYNNRTYSWNIW 477 (480)
T ss_pred ceEEecCCCCcEeEcCCCCCC----ccccEEEEECCEEEEECCcCCCcccceE--EEEECCCCeEEec
Confidence 468999999999999988877 88899999999999999964322 2233 4499999999864
No 14
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=3.5e-34 Score=232.76 Aligned_cols=259 Identities=17% Similarity=0.242 Sum_probs=203.8
Q ss_pred hhccCCCCEEEEEEec------CCCCceeEEEeeCCCCCeeeCCC--------CCCCCCCCCCceEEEEeccCCEEEEEc
Q 017349 71 KSLSLSLPYLFIFSFH------KPTARIQWQALDPRSGRWFVLPP--------MPCPKAVCPQAFACTSLPRQGKLFVLG 136 (373)
Q Consensus 71 ~~~~~~~~~l~~~gg~------~~~~~~~~~~~d~~~~~W~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~v~G 136 (373)
++....+..||.|||. ......+++++|..+-+|.++++ .+.|. ..-..++.+++..++++|+.|
T Consensus 17 HAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~-VPyqRYGHtvV~y~d~~yvWG 95 (392)
T KOG4693|consen 17 HAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPA-VPYQRYGHTVVEYQDKAYVWG 95 (392)
T ss_pred ceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCc-cchhhcCceEEEEcceEEEEc
Confidence 3344568999999982 22345678999999999999977 12222 111345555555599999999
Q ss_pred CccCCCCCCcceeEEEeCCCCceecc---CCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEecc-
Q 017349 137 GMRSDTETPMQSTIMYRATTNQWQLA---SPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAA- 212 (373)
Q Consensus 137 G~~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~- 212 (373)
|.+.+ +...+.++.|||.+++|.+. ...|-+|..|+++++++.+|+|||.....+...++++++|..|.+|+.+.
T Consensus 96 GRND~-egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~T 174 (392)
T KOG4693|consen 96 GRNDD-EGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHT 174 (392)
T ss_pred CccCc-ccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhc
Confidence 99754 35678899999999999875 35788999999999999999999996445667899999999999999985
Q ss_pred --CCccccccccEEEECCEEEEEeCccCC--------CccCCceEEEeCCCCceeeccc--CccCCcceE-EEEECCeEE
Q 017349 213 --KLRMGLARYDSAVMGSKMYVTEGWTWP--------FMFSPRGGVYDINKDTWNLMSD--GMKEGWTGI-SIVLEGKLF 279 (373)
Q Consensus 213 --~~~~~~~~~~~~~~~~~lyv~gG~~~~--------~~~~~~i~~yd~~~~~W~~~~~--~~~~~~~~~-~~~~~~~l~ 279 (373)
..|.-|..|++.++++.+|+|||..+. ..+.+.|..+|+.|+.|...+. ..|.++..+ ..+.|+++|
T Consensus 175 kg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y 254 (392)
T KOG4693|consen 175 KGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMY 254 (392)
T ss_pred cCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEE
Confidence 456667889999999999999998653 2345678899999999998755 334455444 489999999
Q ss_pred EEeeCC------CcceEEEeCCCCceeeecCCCCCCcccccceEEEEeCCEEEEEeCCc
Q 017349 280 VISEHG------DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGL 332 (373)
Q Consensus 280 v~gg~~------~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~~ 332 (373)
++||.. .++++.|||++..|..+..-... +..|+...+++.++++|+|||..
T Consensus 255 ~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~-P~aRRRqC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 255 MFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKY-PSARRRQCSVVSGGKVYLFGGTS 312 (392)
T ss_pred EecccchhhhhhhcceeecccccchheeeeccCCC-CCcccceeEEEECCEEEEecCCC
Confidence 999986 47899999999999998753222 34488899999999999999964
No 15
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=271.79 Aligned_cols=242 Identities=16% Similarity=0.293 Sum_probs=194.5
Q ss_pred hcHhHHhhccCchhhHhhhhccCCCCEEEEEEecCCC--CceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCC
Q 017349 53 VSYSWNKAITDPGFALCKKSLSLSLPYLFIFSFHKPT--ARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQG 130 (373)
Q Consensus 53 v~k~W~~l~~~~~~~~~~~~~~~~~~~l~~~gg~~~~--~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (373)
..++|..+...+. .........++.||++||.... ...+++.||+.+++|..+++|+.++ ..++++++ ++
T Consensus 272 ~~~~~~~~~~~~~--~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R----~~~~~~~~--~~ 343 (534)
T PHA03098 272 PLSEINTIIDIHY--VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPR----KNPGVTVF--NN 343 (534)
T ss_pred hhhhcccccCccc--cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccc----ccceEEEE--CC
Confidence 3556766644331 1122445568999999995433 3347899999999999999999554 66777777 99
Q ss_pred EEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEe
Q 017349 131 KLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTT 210 (373)
Q Consensus 131 ~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~ 210 (373)
+||++||... ....+++++||+.+++|+.++++|.+|..++++.++++||++||... ....++++++||+.+++|+.
T Consensus 344 ~lyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~-~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 344 RIYVIGGIYN--SISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISK-NDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred EEEEEeCCCC--CEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCC-CCcccceEEEEeCCCCeeee
Confidence 9999999853 24567899999999999999999999999999999999999999752 33457899999999999999
Q ss_pred ccCCccccccccEEEECCEEEEEeCccCCCc--cCCceEEEeCCCCceeecccCccCCcceE-EEEECCeEEEEeeCC--
Q 017349 211 AAKLRMGLARYDSAVMGSKMYVTEGWTWPFM--FSPRGGVYDINKDTWNLMSDGMKEGWTGI-SIVLEGKLFVISEHG-- 285 (373)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~--~~~~i~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~~~l~v~gg~~-- 285 (373)
++++|.+|..++++..+++||++||...... ..+.+++||+.+++|+.++. ++.++..+ +++++++||++||..
T Consensus 421 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~r~~~~~~~~~~~iyv~GG~~~~ 499 (534)
T PHA03098 421 GSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS-LNFPRINASLCIFNNKIYVVGGDKYE 499 (534)
T ss_pred cCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC-CCcccccceEEEECCEEEEEcCCcCC
Confidence 9999999999999999999999999764321 24569999999999999976 44444433 377899999999975
Q ss_pred --CcceEEEeCCCCceeeecCCC
Q 017349 286 --DCPMKQYNPDDDTWRYVGGDK 306 (373)
Q Consensus 286 --~~~~~~yd~~~~~W~~~~~~~ 306 (373)
...+++||+++++|+.++.+|
T Consensus 500 ~~~~~v~~yd~~~~~W~~~~~~p 522 (534)
T PHA03098 500 YYINEIEVYDDKTNTWTLFCKFP 522 (534)
T ss_pred cccceeEEEeCCCCEEEecCCCc
Confidence 468999999999999998544
No 16
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=6.5e-33 Score=260.91 Aligned_cols=203 Identities=20% Similarity=0.323 Sum_probs=173.0
Q ss_pred CCCEEEEEEecCC-CCceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeC
Q 017349 76 SLPYLFIFSFHKP-TARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRA 154 (373)
Q Consensus 76 ~~~~l~~~gg~~~-~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~ 154 (373)
.++.||++||.+. .....++.|||.+++|..+++|+.++ ..++.+++ +++||++||... .+.+++|||
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r----~~~~~v~~--~~~iYviGG~~~-----~~sve~ydp 338 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPR----LYASGVPA--NNKLYVVGGLPN-----PTSVERWFH 338 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchh----hcceEEEE--CCEEEEECCcCC-----CCceEEEEC
Confidence 5789999998543 33456889999999999999999554 55666766 999999999742 246899999
Q ss_pred CCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEECCEEEEEe
Q 017349 155 TTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTE 234 (373)
Q Consensus 155 ~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~lyv~g 234 (373)
.+++|..+++|+.+|..++++.++++||++||.+ .. .+.+++|||.+++|+.+++|+.+|..+++++++|+||++|
T Consensus 339 ~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~--~~--~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G 414 (480)
T PHA02790 339 GDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHS--ET--DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG 414 (480)
T ss_pred CCCeEEECCCCCCCCcccEEEEECCEEEEecCcC--CC--CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC
Confidence 9999999999999999999999999999999985 22 3679999999999999999999999999999999999999
Q ss_pred CccCCCccCCceEEEeCCCCceeecccCccCCcceE-EEEECCeEEEEeeCC----CcceEEEeCCCCceeeec
Q 017349 235 GWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGI-SIVLEGKLFVISEHG----DCPMKQYNPDDDTWRYVG 303 (373)
Q Consensus 235 G~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~~~l~v~gg~~----~~~~~~yd~~~~~W~~~~ 303 (373)
|. .++||+++++|+.+++ ++.++..+ +++++|+||++||.+ ...+++||+++++|+...
T Consensus 415 G~---------~e~ydp~~~~W~~~~~-m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 415 RN---------AEFYCESSNTWTLIDD-PIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred Cc---------eEEecCCCCcEeEcCC-CCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEecC
Confidence 83 5789999999999986 55545444 488999999999964 357999999999998763
No 17
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.2e-32 Score=247.91 Aligned_cols=231 Identities=14% Similarity=0.192 Sum_probs=177.9
Q ss_pred CceEEEEeccCCEEEEEcCccCCC--------CCCcceeEEEe-CCCC-ceeccCCCCCcceeeeeeEeCCeEEEEcCCC
Q 017349 119 QAFACTSLPRQGKLFVLGGMRSDT--------ETPMQSTIMYR-ATTN-QWQLASPMLTPRSFFASGNVNGKIMAVGGTG 188 (373)
Q Consensus 119 ~~~~~~~~~~~~~i~v~GG~~~~~--------~~~~~~~~~yd-~~t~-~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 188 (373)
..+.++++ ++.|||+||.+... ....+++++|+ +..+ +|..+++||.+|..++++.++++||++||.+
T Consensus 5 ~g~~~~~~--~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~ 82 (323)
T TIGR03548 5 AGCYAGII--GDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSN 82 (323)
T ss_pred eeEeeeEE--CCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCC
Confidence 45667777 99999999986432 12345788885 3323 7999999999999888899999999999986
Q ss_pred CCCCCcCceEEEEeCCCCeE----EeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCceeecccCcc
Q 017349 189 ANINETMTAVECYDPESDTW----TTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMK 264 (373)
Q Consensus 189 ~~~~~~~~~~~~yd~~t~~W----~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~ 264 (373)
....+++++.||+.+++| +.+++||.+|..+++++++++||++||.. .....+.+++||+.+++|+++++.+.
T Consensus 83 --~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~~p~ 159 (323)
T TIGR03548 83 --SSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNR-NGKPSNKSYLFNLETQEWFELPDFPG 159 (323)
T ss_pred --CCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcC-CCccCceEEEEcCCCCCeeECCCCCC
Confidence 555678999999999987 78899999999999999999999999975 33446899999999999999976332
Q ss_pred CCcceEE-EEECCeEEEEeeCC---CcceEEEeCCCCceeeecCCCCC-Ccccc-cceEEEEeCCEEEEEeCCceee---
Q 017349 265 EGWTGIS-IVLEGKLFVISEHG---DCPMKQYNPDDDTWRYVGGDKFP-CEVMH-RPFAVNGVEGKIYVVSSGLNVA--- 335 (373)
Q Consensus 265 ~~~~~~~-~~~~~~l~v~gg~~---~~~~~~yd~~~~~W~~~~~~~~~-~~~~~-~~~~~~~~~~~l~i~GG~~~~~--- 335 (373)
.++..++ ++++++||++||.. ..++++||+++++|+.++.++.. .+..+ ..++++..+++|||+||.....
T Consensus 160 ~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~ 239 (323)
T TIGR03548 160 EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYND 239 (323)
T ss_pred CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHH
Confidence 3444444 68999999999975 24678999999999999875321 11222 2344556689999999975321
Q ss_pred ------------------------------eeEEEEeecCCcccceEEecC
Q 017349 336 ------------------------------IGRVYEEQNGGISAEWKVMTA 356 (373)
Q Consensus 336 ------------------------------~~~~~~~~~d~~~~~W~~~~~ 356 (373)
..++ +.||+++++|+.++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~yd~~~~~W~~~~~ 288 (323)
T TIGR03548 240 AVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKI--LIYNVRTGKWKSIGN 288 (323)
T ss_pred HHhhhhhccchhhhhhHHHHhCCCccccCcCceE--EEEECCCCeeeEccc
Confidence 1233 449999999998863
No 18
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=6.1e-32 Score=245.87 Aligned_cols=238 Identities=18% Similarity=0.247 Sum_probs=173.1
Q ss_pred CCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeC--CCCceeccCCCC-CcceeeeeeEeCCeEEE
Q 017349 107 LPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRA--TTNQWQLASPML-TPRSFFASGNVNGKIMA 183 (373)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~--~t~~W~~~~~~~-~~r~~~~~~~~~~~iyv 183 (373)
+++||.+. ...+++++ +++|||+||.. .+.+++||+ .+++|+.+++|| .+|..++++.++++||+
T Consensus 1 ~~~lp~~~----~~~~~~~~--~~~vyv~GG~~------~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv 68 (346)
T TIGR03547 1 LPDLPVGF----KNGTGAII--GDKVYVGLGSA------GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYV 68 (346)
T ss_pred CCCCCccc----cCceEEEE--CCEEEEEcccc------CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEE
Confidence 35677443 33445566 89999999973 247899996 578999999998 68999999999999999
Q ss_pred EcCCCCCC----CCcCceEEEEeCCCCeEEecc-CCccccccccEE-EECCEEEEEeCccCCC-----------------
Q 017349 184 VGGTGANI----NETMTAVECYDPESDTWTTAA-KLRMGLARYDSA-VMGSKMYVTEGWTWPF----------------- 240 (373)
Q Consensus 184 ~GG~~~~~----~~~~~~~~~yd~~t~~W~~~~-~~~~~~~~~~~~-~~~~~lyv~gG~~~~~----------------- 240 (373)
+||..... ...++++++||+.+++|+.++ .+|.++..++++ +++++||++||.....
T Consensus 69 ~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 148 (346)
T TIGR03547 69 FGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEP 148 (346)
T ss_pred EeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchh
Confidence 99985211 124678999999999999997 456666666665 6899999999975210
Q ss_pred ----------------ccCCceEEEeCCCCceeecccCccCCcceEE-EEECCeEEEEeeCC-----CcceEEEe--CCC
Q 017349 241 ----------------MFSPRGGVYDINKDTWNLMSDGMKEGWTGIS-IVLEGKLFVISEHG-----DCPMKQYN--PDD 296 (373)
Q Consensus 241 ----------------~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~v~gg~~-----~~~~~~yd--~~~ 296 (373)
...+.+++||+.+++|+.+++.+..++.+++ ++++++||++||.. ...++.|| +++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~ 228 (346)
T TIGR03547 149 KDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGK 228 (346)
T ss_pred hhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCC
Confidence 0136899999999999999863323444444 78899999999964 23455565 567
Q ss_pred CceeeecCCCCCCc---ccccceEEEEeCCEEEEEeCCceee---------------eeEE-EEeecCCcccceEEecC
Q 017349 297 DTWRYVGGDKFPCE---VMHRPFAVNGVEGKIYVVSSGLNVA---------------IGRV-YEEQNGGISAEWKVMTA 356 (373)
Q Consensus 297 ~~W~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~GG~~~~~---------------~~~~-~~~~~d~~~~~W~~~~~ 356 (373)
++|+.++.||.++. ..+..++++.++++|||+||..... ...+ ....||+++++|+.+..
T Consensus 229 ~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~ 307 (346)
T TIGR03547 229 LEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGK 307 (346)
T ss_pred ceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCC
Confidence 79999998877631 1123455778999999999964210 0011 12448888999997754
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.98 E-value=2.1e-30 Score=237.51 Aligned_cols=242 Identities=17% Similarity=0.260 Sum_probs=175.4
Q ss_pred CeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCC--CCceeccCCCC-CcceeeeeeEeCC
Q 017349 103 RWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRAT--TNQWQLASPML-TPRSFFASGNVNG 179 (373)
Q Consensus 103 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~--t~~W~~~~~~~-~~r~~~~~~~~~~ 179 (373)
.+..+++||.+. ...+.+++ +++|||+||.. .+.+++||+. +++|..++++| .+|..++++.+++
T Consensus 18 ~~~~l~~lP~~~----~~~~~~~~--~~~iyv~gG~~------~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~ 85 (376)
T PRK14131 18 NAEQLPDLPVPF----KNGTGAID--NNTVYVGLGSA------GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDG 85 (376)
T ss_pred ecccCCCCCcCc----cCCeEEEE--CCEEEEEeCCC------CCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECC
Confidence 357778888554 33455555 99999999963 2358899986 47899999987 5899999999999
Q ss_pred eEEEEcCCCCCC----CCcCceEEEEeCCCCeEEeccC-CccccccccEEE-ECCEEEEEeCccCCC-------------
Q 017349 180 KIMAVGGTGANI----NETMTAVECYDPESDTWTTAAK-LRMGLARYDSAV-MGSKMYVTEGWTWPF------------- 240 (373)
Q Consensus 180 ~iyv~GG~~~~~----~~~~~~~~~yd~~t~~W~~~~~-~~~~~~~~~~~~-~~~~lyv~gG~~~~~------------- 240 (373)
+||++||..... ...++++++||+.+++|+.+++ +|.++..+++++ .+++||++||.....
T Consensus 86 ~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~ 165 (376)
T PRK14131 86 KLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGK 165 (376)
T ss_pred EEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhccc
Confidence 999999985201 1346789999999999999985 466666677666 899999999975210
Q ss_pred --------------------ccCCceEEEeCCCCceeecccCccCCcceEE-EEECCeEEEEeeCC-----CcceE--EE
Q 017349 241 --------------------MFSPRGGVYDINKDTWNLMSDGMKEGWTGIS-IVLEGKLFVISEHG-----DCPMK--QY 292 (373)
Q Consensus 241 --------------------~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~v~gg~~-----~~~~~--~y 292 (373)
...+.+++||+.+++|+.+++.+..++.+++ ++++++||++||.. ...++ .|
T Consensus 166 ~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~ 245 (376)
T PRK14131 166 DKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKF 245 (376)
T ss_pred chhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEe
Confidence 1246799999999999998863323454444 77899999999953 23333 45
Q ss_pred eCCCCceeeecCCCCCCcc----cccceEEEEeCCEEEEEeCCceee---------------eeEEE-EeecCCcccceE
Q 017349 293 NPDDDTWRYVGGDKFPCEV----MHRPFAVNGVEGKIYVVSSGLNVA---------------IGRVY-EEQNGGISAEWK 352 (373)
Q Consensus 293 d~~~~~W~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~GG~~~~~---------------~~~~~-~~~~d~~~~~W~ 352 (373)
|+++++|+.+..||.++.. .+..+.++.++++|||+||..... ..+++ .+.||+++++|+
T Consensus 246 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~ 325 (376)
T PRK14131 246 TGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQ 325 (376)
T ss_pred cCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccc
Confidence 7889999999987766311 112233577899999999964211 11122 245999999999
Q ss_pred EecC
Q 017349 353 VMTA 356 (373)
Q Consensus 353 ~~~~ 356 (373)
.+..
T Consensus 326 ~~~~ 329 (376)
T PRK14131 326 KVGE 329 (376)
T ss_pred ccCc
Confidence 7644
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.97 E-value=6.6e-30 Score=207.89 Aligned_cols=234 Identities=16% Similarity=0.245 Sum_probs=184.7
Q ss_pred CceEEEEeccCCEEEEEcCccCCC---CCCcceeEEEeCCCCceeccCC-------------CCCcceeeeeeEeCCeEE
Q 017349 119 QAFACTSLPRQGKLFVLGGMRSDT---ETPMQSTIMYRATTNQWQLASP-------------MLTPRSFFASGNVNGKIM 182 (373)
Q Consensus 119 ~~~~~~~~~~~~~i~v~GG~~~~~---~~~~~~~~~yd~~t~~W~~~~~-------------~~~~r~~~~~~~~~~~iy 182 (373)
..|++..+ +..||.|||++... ....-++.++|..+-+|+++++ .|..|+.|+++.+++++|
T Consensus 15 VNHAavaV--G~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~y 92 (392)
T KOG4693|consen 15 VNHAAVAV--GSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAY 92 (392)
T ss_pred ccceeeee--cceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEE
Confidence 55666666 99999999986322 1223488999999999999875 234599999999999999
Q ss_pred EEcCCCCCCCCcCceEEEEeCCCCeEEec---cCCccccccccEEEECCEEEEEeCccC-CCccCCceEEEeCCCCceee
Q 017349 183 AVGGTGANINETMTAVECYDPESDTWTTA---AKLRMGLARYDSAVMGSKMYVTEGWTW-PFMFSPRGGVYDINKDTWNL 258 (373)
Q Consensus 183 v~GG~~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~~~~~~~~~~~~~lyv~gG~~~-~~~~~~~i~~yd~~~~~W~~ 258 (373)
+.||.++ ....-+.++.|||+++.|.+. .-+|.+|.+|++++.++.+|+|||+.+ .....+++.++|..|.+|++
T Consensus 93 vWGGRND-~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~ 171 (392)
T KOG4693|consen 93 VWGGRND-DEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWRE 171 (392)
T ss_pred EEcCccC-cccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeee
Confidence 9999972 355567899999999999875 368899999999999999999999865 34567899999999999999
Q ss_pred ccc-C-ccCCc-ceEEEEECCeEEEEeeCC-------------CcceEEEeCCCCceeeecCCCCCCcccccceEEEEeC
Q 017349 259 MSD-G-MKEGW-TGISIVLEGKLFVISEHG-------------DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVE 322 (373)
Q Consensus 259 ~~~-~-~~~~~-~~~~~~~~~~l~v~gg~~-------------~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 322 (373)
+.. . ++.-+ +..++++++.+||+||.. -..|..+|..++.|......+.. +..|+.|++..++
T Consensus 172 ~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~-P~GRRSHS~fvYn 250 (392)
T KOG4693|consen 172 MHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMK-PGGRRSHSTFVYN 250 (392)
T ss_pred hhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcC-CCcccccceEEEc
Confidence 865 1 22222 334478899999999975 25788999999999998664444 4558999999999
Q ss_pred CEEEEEeCCceeeeeEEEE-eecCCcccceEEecC
Q 017349 323 GKIYVVSSGLNVAIGRVYE-EQNGGISAEWKVMTA 356 (373)
Q Consensus 323 ~~l~i~GG~~~~~~~~~~~-~~~d~~~~~W~~~~~ 356 (373)
++||+|||+...--....+ ++||+-+..|++|+.
T Consensus 251 g~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~ 285 (392)
T KOG4693|consen 251 GKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV 285 (392)
T ss_pred ceEEEecccchhhhhhhcceeecccccchheeeec
Confidence 9999999974322222223 459999999999977
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.95 E-value=1.7e-25 Score=209.48 Aligned_cols=235 Identities=16% Similarity=0.224 Sum_probs=190.8
Q ss_pred CCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccC---CCCCcceeeeeeEeCCeEEEEcCCCCCCCCc
Q 017349 118 PQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLAS---PMLTPRSFFASGNVNGKIMAVGGTGANINET 194 (373)
Q Consensus 118 ~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 194 (373)
+..|.+..+ ++++||+||..........+++++|..+..|.... ..|.+|..|.++.++++||++||.+. ....
T Consensus 61 R~~hs~~~~--~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~-~~~~ 137 (482)
T KOG0379|consen 61 RAGHSAVLI--GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDK-KYRN 137 (482)
T ss_pred hhccceeEE--CCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccC-CCCC
Confidence 366777666 99999999986443222226999999999998754 45789999999999999999999972 3556
Q ss_pred CceEEEEeCCCCeEEecc---CCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCceeeccc--CccCCcce
Q 017349 195 MTAVECYDPESDTWTTAA---KLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD--GMKEGWTG 269 (373)
Q Consensus 195 ~~~~~~yd~~t~~W~~~~---~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~--~~~~~~~~ 269 (373)
+++++.||+.|++|..+. .+|.+|.+|++++.+.+|||+||.+......+++++||+++.+|.++.. +.|.++.+
T Consensus 138 ~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~g 217 (482)
T KOG0379|consen 138 LNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYG 217 (482)
T ss_pred hhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCC
Confidence 889999999999999874 5688999999999999999999998766688999999999999998865 44556666
Q ss_pred EE-EEECCeEEEEeeCC-----CcceEEEeCCCCceeeecCCCCCCcccccceEEEEeCCEEEEEeCCcee---eeeEEE
Q 017349 270 IS-IVLEGKLFVISEHG-----DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNV---AIGRVY 340 (373)
Q Consensus 270 ~~-~~~~~~l~v~gg~~-----~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~---~~~~~~ 340 (373)
++ ++.+++++++||.. .++++.+|..+.+|..+...+.. +..|..|.++..+++++++||.... ...+.|
T Consensus 218 H~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~-p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~ 296 (482)
T KOG0379|consen 218 HAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDL-PSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLY 296 (482)
T ss_pred ceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCC-CCCcceeeeEEECCEEEEEcCCcccccccccccc
Confidence 66 78899999998876 47899999999999976542222 2338889999999999999998764 344455
Q ss_pred EeecCCcccceEEecCCC
Q 017349 341 EEQNGGISAEWKVMTAPR 358 (373)
Q Consensus 341 ~~~~d~~~~~W~~~~~p~ 358 (373)
. +|.++..|..+..+.
T Consensus 297 ~--l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 297 G--LDLETLVWSKVESVG 312 (482)
T ss_pred c--ccccccceeeeeccc
Confidence 5 899999999886644
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.93 E-value=6.4e-24 Score=198.97 Aligned_cols=228 Identities=18% Similarity=0.258 Sum_probs=182.6
Q ss_pred cCCCCEEEEEEecCCC-Cc--eeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeE
Q 017349 74 SLSLPYLFIFSFHKPT-AR--IQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTI 150 (373)
Q Consensus 74 ~~~~~~l~~~gg~~~~-~~--~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~ 150 (373)
....+.+|+|||.... .. .++++||..+..|.....-...+ ..+..+..+++ +++||+|||.+.. ....++++
T Consensus 67 ~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p-~~r~g~~~~~~--~~~l~lfGG~~~~-~~~~~~l~ 142 (482)
T KOG0379|consen 67 VLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEP-SPRYGHSLSAV--GDKLYLFGGTDKK-YRNLNELH 142 (482)
T ss_pred eEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCC-CcccceeEEEE--CCeEEEEccccCC-CCChhheE
Confidence 3448999999994332 22 25999999999997764432111 22356666666 8999999999742 34578999
Q ss_pred EEeCCCCceeccC---CCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEecc---CCccccccccEE
Q 017349 151 MYRATTNQWQLAS---PMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAA---KLRMGLARYDSA 224 (373)
Q Consensus 151 ~yd~~t~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~~~~~~~~ 224 (373)
.||+.|++|..+. .+|.+|..|+++..++++|++||.+. .....+++++||+.+.+|.++. ..|.||..|+++
T Consensus 143 ~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~-~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~ 221 (482)
T KOG0379|consen 143 SLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGG-TGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMV 221 (482)
T ss_pred eccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccC-cccceeeeeeeccccccceecccCCCCCCCCCCceEE
Confidence 9999999999874 46789999999999999999999972 2227999999999999999874 678899999999
Q ss_pred EECCEEEEEeCccCCCccCCceEEEeCCCCceeeccc--CccCCcceEE-EEECCeEEEEeeCCC------cceEEEeCC
Q 017349 225 VMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD--GMKEGWTGIS-IVLEGKLFVISEHGD------CPMKQYNPD 295 (373)
Q Consensus 225 ~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~--~~~~~~~~~~-~~~~~~l~v~gg~~~------~~~~~yd~~ 295 (373)
+.+++++++||.+.....+++++.+|+.+.+|.++.. ..+.++..+. ++.+.+++++||... .+++.||.+
T Consensus 222 ~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~ 301 (482)
T KOG0379|consen 222 VVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLE 301 (482)
T ss_pred EECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccccccccccccccccc
Confidence 9999999999988667788999999999999996653 3555666555 688999999998642 467889999
Q ss_pred CCceeeecCCC
Q 017349 296 DDTWRYVGGDK 306 (373)
Q Consensus 296 ~~~W~~~~~~~ 306 (373)
++.|..+....
T Consensus 302 ~~~w~~~~~~~ 312 (482)
T KOG0379|consen 302 TLVWSKVESVG 312 (482)
T ss_pred ccceeeeeccc
Confidence 99999998755
No 23
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=1.1e-24 Score=192.13 Aligned_cols=267 Identities=15% Similarity=0.179 Sum_probs=199.8
Q ss_pred hHHhhccCc-hhhHhhhhc--cCCCCEEEEEEecCCCCceeEEEeeCCCCCeeeCC---CCCCCCCCCCCceEEEEeccC
Q 017349 56 SWNKAITDP-GFALCKKSL--SLSLPYLFIFSFHKPTARIQWQALDPRSGRWFVLP---PMPCPKAVCPQAFACTSLPRQ 129 (373)
Q Consensus 56 ~W~~l~~~~-~~~~~~~~~--~~~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~~~---~~~~~~~~~~~~~~~~~~~~~ 129 (373)
+||.+..+. ...+.|+.+ ...++.|.+|||.+....+++++||..+|+|..-. .+|.+ ...|+.... +
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpg----cAA~Gfvcd--G 91 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPG----CAAFGFVCD--G 91 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCc----hhhcceEec--C
Confidence 677775432 233334433 34588999999988888889999999999997643 44522 255666655 8
Q ss_pred CEEEEEcCccCCCCCCcceeEEEeCCCCceeccC-------CCCCcceeeeeeEeCCeEEEEcCCCCC-------CCCcC
Q 017349 130 GKLFVLGGMRSDTETPMQSTIMYRATTNQWQLAS-------PMLTPRSFFASGNVNGKIMAVGGTGAN-------INETM 195 (373)
Q Consensus 130 ~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~-------~~~~~r~~~~~~~~~~~iyv~GG~~~~-------~~~~~ 195 (373)
.+||+|||...-+ ..++++|......=.|+++. .+|.||..|+...++++-|+|||..++ -.+.+
T Consensus 92 trilvFGGMvEYG-kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYL 170 (830)
T KOG4152|consen 92 TRILVFGGMVEYG-KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYL 170 (830)
T ss_pred ceEEEEccEeeec-cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhh
Confidence 9999999987554 56777776666655777764 356889999999999999999997432 12458
Q ss_pred ceEEEEeCCCC----eEEec---cCCccccccccEEEE------CCEEEEEeCccCCCccCCceEEEeCCCCceeeccc-
Q 017349 196 TAVECYDPESD----TWTTA---AKLRMGLARYDSAVM------GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD- 261 (373)
Q Consensus 196 ~~~~~yd~~t~----~W~~~---~~~~~~~~~~~~~~~------~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~- 261 (373)
+++++.+..-+ .|... ..+|.+|..|.++++ ..++|++||.. +.++.+++.+|+++-.|.+...
T Consensus 171 nDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~--G~RLgDLW~Ldl~Tl~W~kp~~~ 248 (830)
T KOG4152|consen 171 NDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMS--GCRLGDLWTLDLDTLTWNKPSLS 248 (830)
T ss_pred cceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccc--cccccceeEEecceeeccccccc
Confidence 89999988755 48764 478899999999887 35799999986 5678899999999999987643
Q ss_pred ---CccCCcceEEEEECCeEEEEeeCC------------------CcceEEEeCCCCceeeecC--C-CCCCcccccceE
Q 017349 262 ---GMKEGWTGISIVLEGKLFVISEHG------------------DCPMKQYNPDDDTWRYVGG--D-KFPCEVMHRPFA 317 (373)
Q Consensus 262 ---~~~~~~~~~~~~~~~~l~v~gg~~------------------~~~~~~yd~~~~~W~~~~~--~-~~~~~~~~~~~~ 317 (373)
|+|+..+ .++++++|+||+||.- ..++-.+|+++..|+.+-. . ....++.|.+|+
T Consensus 249 G~~PlPRSLH-sa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHC 327 (830)
T KOG4152|consen 249 GVAPLPRSLH-SATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHC 327 (830)
T ss_pred CCCCCCcccc-cceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccce
Confidence 3444443 3488999999999963 3567788999999998743 1 111234588999
Q ss_pred EEEeCCEEEEEeCCc
Q 017349 318 VNGVEGKIYVVSSGL 332 (373)
Q Consensus 318 ~~~~~~~l~i~GG~~ 332 (373)
+++++.+|||..|+.
T Consensus 328 AvAigtRlYiWSGRD 342 (830)
T KOG4152|consen 328 AVAIGTRLYIWSGRD 342 (830)
T ss_pred eEEeccEEEEEeccc
Confidence 999999999999964
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.92 E-value=5.4e-24 Score=183.35 Aligned_cols=234 Identities=15% Similarity=0.201 Sum_probs=181.7
Q ss_pred CCceEEEEeccCCEEEEEcCccCCC--CCCcceeEEEeCCCCceecc--CCCCCcceeeeeeEeC-CeEEEEcCCCCCCC
Q 017349 118 PQAFACTSLPRQGKLFVLGGMRSDT--ETPMQSTIMYRATTNQWQLA--SPMLTPRSFFASGNVN-GKIMAVGGTGANIN 192 (373)
Q Consensus 118 ~~~~~~~~~~~~~~i~v~GG~~~~~--~~~~~~~~~yd~~t~~W~~~--~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~ 192 (373)
+.+....+....+.|++|||...++ ....+++|.||..++.|+++ |+.|.||+.|.++++- |.+|++||.-....
T Consensus 67 Rsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPn 146 (521)
T KOG1230|consen 67 RSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPN 146 (521)
T ss_pred CCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcc
Confidence 4555555555577999999975444 23468999999999999986 5667899999988874 89999999842221
Q ss_pred ----CcCceEEEEeCCCCeEEecc--CCccccccccEEEECCEEEEEeCccC---CCccCCceEEEeCCCCceeecccCc
Q 017349 193 ----ETMTAVECYDPESDTWTTAA--KLRMGLARYDSAVMGSKMYVTEGWTW---PFMFSPRGGVYDINKDTWNLMSDGM 263 (373)
Q Consensus 193 ----~~~~~~~~yd~~t~~W~~~~--~~~~~~~~~~~~~~~~~lyv~gG~~~---~~~~~~~i~~yd~~~~~W~~~~~~~ 263 (373)
....+++.||..+++|+++. .-|.+|++|-+++...+|++|||+.+ ...+.|++++||+++=+|+.+.++-
T Consensus 147 q~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsg 226 (521)
T KOG1230|consen 147 QEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSG 226 (521)
T ss_pred hhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCC
Confidence 23578999999999999884 66889999999999999999999854 3456789999999999999987632
Q ss_pred --cCCcceEE-EEE-CCeEEEEeeCC-------------CcceEEEeCCC-----CceeeecCCCCCCcccccceEEEEe
Q 017349 264 --KEGWTGIS-IVL-EGKLFVISEHG-------------DCPMKQYNPDD-----DTWRYVGGDKFPCEVMHRPFAVNGV 321 (373)
Q Consensus 264 --~~~~~~~~-~~~-~~~l~v~gg~~-------------~~~~~~yd~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~ 321 (373)
|.+|++.+ .+. +|.|||.||++ ..++|..+++. -+|+.+.....+ +..|.+++++..
T Consensus 227 a~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~k-PspRsgfsv~va 305 (521)
T KOG1230|consen 227 AGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVK-PSPRSGFSVAVA 305 (521)
T ss_pred CCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCC-CCCCCceeEEEe
Confidence 56677766 444 99999999986 46888999887 478888775444 444888888654
Q ss_pred -CCEEEEEeCCcee----------eeeEEEEeecCCcccceEEe
Q 017349 322 -EGKIYVVSSGLNV----------AIGRVYEEQNGGISAEWKVM 354 (373)
Q Consensus 322 -~~~l~i~GG~~~~----------~~~~~~~~~~d~~~~~W~~~ 354 (373)
+++-+.|||-.+- +.+++|- ||.+.++|...
T Consensus 306 ~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~--fdlt~nrW~~~ 347 (521)
T KOG1230|consen 306 KNHKALFFGGVCDLEEEEESLSGEFFNDLYF--FDLTRNRWSEG 347 (521)
T ss_pred cCCceEEecceecccccchhhhhhhhhhhhh--eecccchhhHh
Confidence 6699999996541 2333444 99999999854
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.89 E-value=3.6e-22 Score=172.22 Aligned_cols=268 Identities=12% Similarity=0.100 Sum_probs=190.9
Q ss_pred CCCCCCCChHHHHHhhccCCccchhhhhh-hcHhHHhhccCchhhHhhhhc--cCCCCEEEEEEecCCCC-----ceeEE
Q 017349 24 QPLIPGLPDEIGELCLLHVPYPYQALVRS-VSYSWNKAITDPGFALCKKSL--SLSLPYLFIFSFHKPTA-----RIQWQ 95 (373)
Q Consensus 24 ~~~~~~LP~dl~~~il~rlp~~~l~~~~~-v~k~W~~l~~~~~~~~~~~~~--~~~~~~l~~~gg~~~~~-----~~~~~ 95 (373)
-.+.+.|-++.+.+|+..+..+......- +|- ..+|+. ...+ ....+-|++|||.-.+. -++++
T Consensus 30 kkl~~e~de~~i~~~iq~~eaK~~e~~~e~~~~-----~PspRs---n~sl~~nPekeELilfGGEf~ngqkT~vYndLy 101 (521)
T KOG1230|consen 30 KKLNEELDEADIAEIIQSLEAKQIEHVVETSVP-----PPSPRS---NPSLFANPEKEELILFGGEFYNGQKTHVYNDLY 101 (521)
T ss_pred hhcCcccchHHHHHHHHhhhhhccceeeeccCC-----CCCCCC---CcceeeccCcceeEEecceeecceeEEEeeeee
Confidence 34555666778888888887776422211 010 122222 1111 12245788898843222 24678
Q ss_pred EeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCC--C--CCCcceeEEEeCCCCceeccC--CCCCcc
Q 017349 96 ALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSD--T--ETPMQSTIMYRATTNQWQLAS--PMLTPR 169 (373)
Q Consensus 96 ~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~--~--~~~~~~~~~yd~~t~~W~~~~--~~~~~r 169 (373)
.||..++.|..+.....|+ .+..|.++++. .|.+|+|||.... + -...+++|.||..+++|.++. .-|.+|
T Consensus 102 ~Yn~k~~eWkk~~spn~P~--pRsshq~va~~-s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~R 178 (521)
T KOG1230|consen 102 SYNTKKNEWKKVVSPNAPP--PRSSHQAVAVP-SNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPR 178 (521)
T ss_pred EEeccccceeEeccCCCcC--CCccceeEEec-cCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCC
Confidence 9999999999875443222 24666666664 5799999997422 1 224679999999999999975 457899
Q ss_pred eeeeeeEeCCeEEEEcCCCCC--CCCcCceEEEEeCCCCeEEeccC---CccccccccEEEE-CCEEEEEeCccC-----
Q 017349 170 SFFASGNVNGKIMAVGGTGAN--INETMTAVECYDPESDTWTTAAK---LRMGLARYDSAVM-GSKMYVTEGWTW----- 238 (373)
Q Consensus 170 ~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~~~yd~~t~~W~~~~~---~~~~~~~~~~~~~-~~~lyv~gG~~~----- 238 (373)
+.|.++.+..+|++|||.... .....+++++||+.|=+|.++.+ -|.+|++++..+. +|.|||.||+..
T Consensus 179 SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK 258 (521)
T KOG1230|consen 179 SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKK 258 (521)
T ss_pred ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhh
Confidence 999999999999999998522 23458999999999999999853 4788999998887 999999999862
Q ss_pred ---CCccCCceEEEeCCC-----Cceeeccc--CccCCcceEE--EEECCeEEEEeeCC-------------CcceEEEe
Q 017349 239 ---PFMFSPRGGVYDINK-----DTWNLMSD--GMKEGWTGIS--IVLEGKLFVISEHG-------------DCPMKQYN 293 (373)
Q Consensus 239 ---~~~~~~~i~~yd~~~-----~~W~~~~~--~~~~~~~~~~--~~~~~~l~v~gg~~-------------~~~~~~yd 293 (373)
.+...++++.+++.. -.|+.+.+ ..|.+|++.+ +.-+++-+.+||.. .++++.||
T Consensus 259 ~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fd 338 (521)
T KOG1230|consen 259 DVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFD 338 (521)
T ss_pred hhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhhee
Confidence 345567888999987 35787754 3445555544 45578999999964 37899999
Q ss_pred CCCCceeee
Q 017349 294 PDDDTWRYV 302 (373)
Q Consensus 294 ~~~~~W~~~ 302 (373)
...+.|...
T Consensus 339 lt~nrW~~~ 347 (521)
T KOG1230|consen 339 LTRNRWSEG 347 (521)
T ss_pred cccchhhHh
Confidence 999999875
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.87 E-value=6.5e-21 Score=168.57 Aligned_cols=245 Identities=13% Similarity=0.186 Sum_probs=174.9
Q ss_pred CCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceecc---CCCCCcceeeeeeEe
Q 017349 101 SGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLA---SPMLTPRSFFASGNV 177 (373)
Q Consensus 101 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~ 177 (373)
.-+|..+.....|....+|+|-++++ ...|.||||.+. ...+.+.+||..+|+|..- .+.|.+-..|+.+..
T Consensus 16 ~~rWrrV~~~tGPvPrpRHGHRAVai--kELiviFGGGNE---GiiDELHvYNTatnqWf~PavrGDiPpgcAA~Gfvcd 90 (830)
T KOG4152|consen 16 VVRWRRVQQSTGPVPRPRHGHRAVAI--KELIVIFGGGNE---GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCD 90 (830)
T ss_pred ccceEEEecccCCCCCccccchheee--eeeEEEecCCcc---cchhhhhhhccccceeecchhcCCCCCchhhcceEec
Confidence 34677665433222234577777777 899999999753 4567899999999999753 577777778888888
Q ss_pred CCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEecc-------CCccccccccEEEECCEEEEEeCccCC--------Ccc
Q 017349 178 NGKIMAVGGTGANINETMTAVECYDPESDTWTTAA-------KLRMGLARYDSAVMGSKMYVTEGWTWP--------FMF 242 (373)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~-------~~~~~~~~~~~~~~~~~lyv~gG~~~~--------~~~ 242 (373)
+.+||+|||+- ...+..++++-+....-.|+++. .+|.+|-+|+-..++++-|+|||...+ ..+
T Consensus 91 GtrilvFGGMv-EYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrY 169 (830)
T KOG4152|consen 91 GTRILVFGGMV-EYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRY 169 (830)
T ss_pred CceEEEEccEe-eeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchh
Confidence 99999999985 24556666554433344567763 457789999999999999999997532 356
Q ss_pred CCceEEEeCCCC----ceeeccc--CccCCcceEE-EEE------CCeEEEEeeCC---CcceEEEeCCCCceeeecC--
Q 017349 243 SPRGGVYDINKD----TWNLMSD--GMKEGWTGIS-IVL------EGKLFVISEHG---DCPMKQYNPDDDTWRYVGG-- 304 (373)
Q Consensus 243 ~~~i~~yd~~~~----~W~~~~~--~~~~~~~~~~-~~~------~~~l~v~gg~~---~~~~~~yd~~~~~W~~~~~-- 304 (373)
++++++.++.-+ .|...-. ..|.+|..+. +++ ..++||+||.+ .+++|.+|+++-.|.+..-
T Consensus 170 LnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G 249 (830)
T KOG4152|consen 170 LNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSG 249 (830)
T ss_pred hcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccC
Confidence 778888888755 3876432 3444444443 444 34799999876 6899999999999998754
Q ss_pred -CCCCCcccccceEEEEeCCEEEEEeCCceeeeeEEEE-------------eecCCcccceEEec
Q 017349 305 -DKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYE-------------EQNGGISAEWKVMT 355 (373)
Q Consensus 305 -~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~-------------~~~d~~~~~W~~~~ 355 (373)
.|+| |.-|+++.+++++|||||+.-....++.+ -+.+.++.+|+.|-
T Consensus 250 ~~PlP----RSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~ 310 (830)
T KOG4152|consen 250 VAPLP----RSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLL 310 (830)
T ss_pred CCCCC----cccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeee
Confidence 5666 88999999999999999975432211111 22668889999653
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.82 E-value=3.1e-18 Score=146.04 Aligned_cols=258 Identities=19% Similarity=0.254 Sum_probs=183.2
Q ss_pred CCCCEEEEEEecCCCCceeEEEeeCCC--CCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCC---CCCccee
Q 017349 75 LSLPYLFIFSFHKPTARIQWQALDPRS--GRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDT---ETPMQST 149 (373)
Q Consensus 75 ~~~~~l~~~gg~~~~~~~~~~~~d~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~---~~~~~~~ 149 (373)
..+..+|+..|... ..++..|+.. ..|+.+...|..+ +..-..+++ +++||+|||..... ....+++
T Consensus 44 ~ig~~~YVGLGs~G---~afy~ldL~~~~k~W~~~a~FpG~~---rnqa~~a~~--~~kLyvFgG~Gk~~~~~~~~~nd~ 115 (381)
T COG3055 44 LIGDTVYVGLGSAG---TAFYVLDLKKPGKGWTKIADFPGGA---RNQAVAAVI--GGKLYVFGGYGKSVSSSPQVFNDA 115 (381)
T ss_pred eecceEEEEeccCC---ccceehhhhcCCCCceEcccCCCcc---cccchheee--CCeEEEeeccccCCCCCceEeeee
Confidence 45678999876433 3478888764 5799999999655 244445555 99999999984322 2456899
Q ss_pred EEEeCCCCceeccCCC-CCcceeeeeeEeCC-eEEEEcCCCC--------------------------------CCCCcC
Q 017349 150 IMYRATTNQWQLASPM-LTPRSFFASGNVNG-KIMAVGGTGA--------------------------------NINETM 195 (373)
Q Consensus 150 ~~yd~~t~~W~~~~~~-~~~r~~~~~~~~~~-~iyv~GG~~~--------------------------------~~~~~~ 195 (373)
|+|||.+|+|+++... |.....++++..++ +||++||.+- ......
T Consensus 116 Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n 195 (381)
T COG3055 116 YRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFN 195 (381)
T ss_pred EEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccc
Confidence 9999999999998754 45556677777776 9999999740 011235
Q ss_pred ceEEEEeCCCCeEEeccCCcc-ccccccEEEECCEEEEEeCccCCCccCCceEEEeCCC--Cceeeccc-CccC-----C
Q 017349 196 TAVECYDPESDTWTTAAKLRM-GLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINK--DTWNLMSD-GMKE-----G 266 (373)
Q Consensus 196 ~~~~~yd~~t~~W~~~~~~~~-~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~--~~W~~~~~-~~~~-----~ 266 (373)
..+..|||+++.|+.+...|. ++...+.+.-++++.++-|.-.++-++..+..++... .+|..+++ |.+. +
T Consensus 196 ~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eG 275 (381)
T COG3055 196 KEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEG 275 (381)
T ss_pred ccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccc
Confidence 678999999999999987665 4455444445777888988876777778888888764 47998866 2222 1
Q ss_pred cceEE-EEECCeEEEEeeCC-----------------------CcceEEEeCCCCceeeecCCCCCCcccccceEEEEeC
Q 017349 267 WTGIS-IVLEGKLFVISEHG-----------------------DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVE 322 (373)
Q Consensus 267 ~~~~~-~~~~~~l~v~gg~~-----------------------~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 322 (373)
..++. -..++.+.+.||.. ...|+.+| .+.|+.+..+|.+ ...-..+..+
T Consensus 276 vAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~----l~YG~s~~~n 349 (381)
T COG3055 276 VAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQG----LAYGVSLSYN 349 (381)
T ss_pred cceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCC----ccceEEEecC
Confidence 22221 35688899998865 35777887 8899999988877 5556667889
Q ss_pred CEEEEEeCCceee--eeEEEEeecCC
Q 017349 323 GKIYVVSSGLNVA--IGRVYEEQNGG 346 (373)
Q Consensus 323 ~~l~i~GG~~~~~--~~~~~~~~~d~ 346 (373)
++||+|||..+.. .-+++...+|.
T Consensus 350 n~vl~IGGE~~~Gka~~~v~~l~~~g 375 (381)
T COG3055 350 NKVLLIGGETSGGKATTRVYSLSWDG 375 (381)
T ss_pred CcEEEEccccCCCeeeeeEEEEEEcC
Confidence 9999999976643 33455544443
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.64 E-value=9.3e-15 Score=125.04 Aligned_cols=215 Identities=18% Similarity=0.284 Sum_probs=151.7
Q ss_pred eeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCC--CceeccCCCC-CcceeeeeeEeCCeE
Q 017349 105 FVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATT--NQWQLASPML-TPRSFFASGNVNGKI 181 (373)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t--~~W~~~~~~~-~~r~~~~~~~~~~~i 181 (373)
..+|.+|.+. ... ..+.+ ++.+||-=|.. -.+.+..|... ..|+++...| .+|.....++++++|
T Consensus 28 ~~lPdlPvg~---KnG-~Ga~i--g~~~YVGLGs~------G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kL 95 (381)
T COG3055 28 GQLPDLPVGF---KNG-AGALI--GDTVYVGLGSA------GTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKL 95 (381)
T ss_pred ccCCCCCccc---ccc-cccee--cceEEEEeccC------CccceehhhhcCCCCceEcccCCCcccccchheeeCCeE
Confidence 3456666443 122 33344 77999876632 22678888765 4899999887 679999999999999
Q ss_pred EEEcCCCCC---CCCcCceEEEEeCCCCeEEecc-CCccccccccEEEECC-EEEEEeCccC------------------
Q 017349 182 MAVGGTGAN---INETMTAVECYDPESDTWTTAA-KLRMGLARYDSAVMGS-KMYVTEGWTW------------------ 238 (373)
Q Consensus 182 yv~GG~~~~---~~~~~~~~~~yd~~t~~W~~~~-~~~~~~~~~~~~~~~~-~lyv~gG~~~------------------ 238 (373)
|++||..-. ..+..+++++|||.+|+|+++. ..|.....+.++.+++ +||++||.+.
T Consensus 96 yvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~ 175 (381)
T COG3055 96 YVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKE 175 (381)
T ss_pred EEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHH
Confidence 999998421 2345789999999999999986 4566677788888877 8999999762
Q ss_pred ---------------CCccCCceEEEeCCCCceeecccCccCCcceEEEE-ECCeEEEEeeCC-----CcceEEEeCC--
Q 017349 239 ---------------PFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIV-LEGKLFVISEHG-----DCPMKQYNPD-- 295 (373)
Q Consensus 239 ---------------~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~-~~~~l~v~gg~~-----~~~~~~yd~~-- 295 (373)
+......+..||++++.|+.+...+-.+..+++++ -++++.++.|.- ...+++++..
T Consensus 176 ~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~ 255 (381)
T COG3055 176 AVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGD 255 (381)
T ss_pred HHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccC
Confidence 13345567899999999999886455566666655 466688888754 4566676665
Q ss_pred CCceeeecCCCCCCccccc-ceEE--EEeCCEEEEEeCC
Q 017349 296 DDTWRYVGGDKFPCEVMHR-PFAV--NGVEGKIYVVSSG 331 (373)
Q Consensus 296 ~~~W~~~~~~~~~~~~~~~-~~~~--~~~~~~l~i~GG~ 331 (373)
.-+|..+..+|.|...... -++. -..++.+++.||.
T Consensus 256 ~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGA 294 (381)
T COG3055 256 NLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGA 294 (381)
T ss_pred ceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCC
Confidence 4589999887776432211 1222 2467888888884
No 29
>PF13964 Kelch_6: Kelch motif
Probab=99.27 E-value=1.2e-11 Score=78.17 Aligned_cols=50 Identities=32% Similarity=0.481 Sum_probs=45.2
Q ss_pred cceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCcccc
Q 017349 168 PRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGL 218 (373)
Q Consensus 168 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~ 218 (373)
||..|+++.++++||++||... .....+++++||++|++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~-~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDN-SGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCC-CCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 6889999999999999999972 2677899999999999999999999876
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.13 E-value=1.6e-10 Score=73.02 Aligned_cols=49 Identities=29% Similarity=0.544 Sum_probs=42.3
Q ss_pred CCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcc
Q 017349 118 PQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPR 169 (373)
Q Consensus 118 ~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r 169 (373)
+..++++++ +++|||+||.... ....+++++||+.+++|+++++||.+|
T Consensus 2 R~~~s~v~~--~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 2 RYGHSAVVV--GGKIYVFGGYDNS-GKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CccCEEEEE--CCEEEEECCCCCC-CCccccEEEEcCCCCcEEECCCCCCCC
Confidence 366777777 9999999999654 367889999999999999999999887
No 31
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.05 E-value=1.5e-10 Score=103.36 Aligned_cols=185 Identities=15% Similarity=0.155 Sum_probs=129.4
Q ss_pred CCCCCeeeCCCCCCC------CCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccC---CCCCcc
Q 017349 99 PRSGRWFVLPPMPCP------KAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLAS---PMLTPR 169 (373)
Q Consensus 99 ~~~~~W~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~r 169 (373)
+-+.+|.++++-... ...-+.+|.++....++.||+.||.++ ...+.++|+|+...+.|..+. ..|-.|
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG--~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~R 313 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDG--TQDLADFWAYSVKENQWTCINRDTEGPGAR 313 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCccc--chhHHHHHhhcCCcceeEEeecCCCCCcch
Confidence 345678776543200 001135666666655679999999954 457889999999999999874 367789
Q ss_pred eeeeeeEeCC--eEEEEcCCCCC----CCCcCceEEEEeCCCCeEEecc------CCccccccccEEEECCE--EEEEeC
Q 017349 170 SFFASGNVNG--KIMAVGGTGAN----INETMTAVECYDPESDTWTTAA------KLRMGLARYDSAVMGSK--MYVTEG 235 (373)
Q Consensus 170 ~~~~~~~~~~--~iyv~GG~~~~----~~~~~~~~~~yd~~t~~W~~~~------~~~~~~~~~~~~~~~~~--lyv~gG 235 (373)
..|.++.... ++|++|-+-.. .....+++++||..++.|..+. .-|...+.|++++.+.+ |||+||
T Consensus 314 sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGG 393 (723)
T KOG2437|consen 314 SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGG 393 (723)
T ss_pred hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecC
Confidence 9999988654 99999976311 2234678999999999999874 23555678888888766 999999
Q ss_pred ccCCCc--cCCceEEEeCCCCceeeccc------Cc---cCCcceEE---EEECCeEEEEeeCC
Q 017349 236 WTWPFM--FSPRGGVYDINKDTWNLMSD------GM---KEGWTGIS---IVLEGKLFVISEHG 285 (373)
Q Consensus 236 ~~~~~~--~~~~i~~yd~~~~~W~~~~~------~~---~~~~~~~~---~~~~~~l~v~gg~~ 285 (373)
...... ....+++||.....|..... +. ...+.+++ +.-++++|++||.+
T Consensus 394 r~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~ 457 (723)
T KOG2437|consen 394 RILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQR 457 (723)
T ss_pred eeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcc
Confidence 864322 23578999999999987543 11 01122222 34578899999876
No 32
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.05 E-value=9.6e-11 Score=104.56 Aligned_cols=226 Identities=14% Similarity=0.107 Sum_probs=142.1
Q ss_pred CCEEEEEEecCCC-CceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCC----CCCcceeEE
Q 017349 77 LPYLFIFSFHKPT-ARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDT----ETPMQSTIM 151 (373)
Q Consensus 77 ~~~l~~~gg~~~~-~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~----~~~~~~~~~ 151 (373)
.+++|+.||.++. ..-+++.|+...+.|..+..-...+ ..+.+|-++......++|+.|-+.+.. -....++|+
T Consensus 272 ~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~P-G~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~ 350 (723)
T KOG2437|consen 272 TECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGP-GARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWR 350 (723)
T ss_pred CcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCC-cchhhhhhhhhhhHhHHhhhhhccccccccccccccceEE
Confidence 5699999996654 4557999999999998875432111 223556665555567999999875332 234568999
Q ss_pred EeCCCCceeccCC------CCCcceeeeeeEeCCe--EEEEcCCCCCCC-CcCceEEEEeCCCCeEEeccC---------
Q 017349 152 YRATTNQWQLASP------MLTPRSFFASGNVNGK--IMAVGGTGANIN-ETMTAVECYDPESDTWTTAAK--------- 213 (373)
Q Consensus 152 yd~~t~~W~~~~~------~~~~r~~~~~~~~~~~--iyv~GG~~~~~~-~~~~~~~~yd~~t~~W~~~~~--------- 213 (373)
||..++.|.-+.. -|.....|.+++.+.+ |||+||.....+ .....++.||.....|+.+..
T Consensus 351 FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vv 430 (723)
T KOG2437|consen 351 FDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVV 430 (723)
T ss_pred EecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcch
Confidence 9999999988752 2445678889988877 999999863222 346679999999999987641
Q ss_pred -CccccccccE--EEECCEEEEEeCccCCCccCCceEEEeCCCCceeeccc-------CccCCcceEEEE---ECCeEEE
Q 017349 214 -LRMGLARYDS--AVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD-------GMKEGWTGISIV---LEGKLFV 280 (373)
Q Consensus 214 -~~~~~~~~~~--~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~-------~~~~~~~~~~~~---~~~~l~v 280 (373)
....|-+|.+ +.-+..+|++||.... ..++-.+.||+....=..+.. ..|.+....-+. -...|.+
T Consensus 431 E~~~sR~ghcmE~~~~n~~ly~fggq~s~-~El~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~ 509 (723)
T KOG2437|consen 431 EDIQSRIGHCMEFHSKNRCLYVFGGQRSK-TELNLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHV 509 (723)
T ss_pred hHHHHHHHHHHHhcCCCCeEEeccCcccc-eEEeehhcceeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhh
Confidence 1123334443 2336789999987632 223445566654433222211 111111111111 2345555
Q ss_pred EeeCC----------CcceEEEeCCCCceeeecC
Q 017349 281 ISEHG----------DCPMKQYNPDDDTWRYVGG 304 (373)
Q Consensus 281 ~gg~~----------~~~~~~yd~~~~~W~~~~~ 304 (373)
.-|.. .+++|+|+..++.|..+..
T Consensus 510 ~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~ 543 (723)
T KOG2437|consen 510 LSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYK 543 (723)
T ss_pred hcccchhccCccccccCcEEEEEecccchhhHhh
Confidence 54433 4678888888888877643
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.04 E-value=3e-10 Score=70.80 Aligned_cols=47 Identities=38% Similarity=0.629 Sum_probs=42.1
Q ss_pred cceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCc
Q 017349 168 PRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLR 215 (373)
Q Consensus 168 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 215 (373)
||..++++.++++||++||.+. ....++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDG-NNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBES-TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecc-cCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6889999999999999999972 3778999999999999999999886
No 34
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.99 E-value=2.2e-07 Score=79.50 Aligned_cols=182 Identities=13% Similarity=0.098 Sum_probs=110.4
Q ss_pred ceeEEEeCCCCceeccCCCCCcce---e--eeeeEe----CCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccc
Q 017349 147 QSTIMYRATTNQWQLASPMLTPRS---F--FASGNV----NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMG 217 (373)
Q Consensus 147 ~~~~~yd~~t~~W~~~~~~~~~r~---~--~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~ 217 (373)
..++++||.|++|+.+|+.+.++. . .+.... .-|+..+.... .......+++|+..+++|+.+...+..
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~--~~~~~~~~~Vys~~~~~Wr~~~~~~~~ 91 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS--GNRNQSEHQVYTLGSNSWRTIECSPPH 91 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeec--CCCCCccEEEEEeCCCCccccccCCCC
Confidence 379999999999999986543211 1 111111 12555554332 122345789999999999998743322
Q ss_pred -cccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCceee-cccCccCC--c-ceEEEEECCeEEEEeeCC---Ccce
Q 017349 218 -LARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNL-MSDGMKEG--W-TGISIVLEGKLFVISEHG---DCPM 289 (373)
Q Consensus 218 -~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~-~~~~~~~~--~-~~~~~~~~~~l~v~gg~~---~~~~ 289 (373)
......+.++|.||.+...... .....|..||+.+++|.+ ++.|.... . ....+.++|+|.++.... ..++
T Consensus 92 ~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~I 170 (230)
T TIGR01640 92 HPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDL 170 (230)
T ss_pred ccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCCCcEEE
Confidence 1122377889999999754311 111269999999999995 55432211 1 122367889999987532 3577
Q ss_pred EEEe-CCCCceeeecCCCCCC-ccccc--ceEEEEeCCEEEEEeCC
Q 017349 290 KQYN-PDDDTWRYVGGDKFPC-EVMHR--PFAVNGVEGKIYVVSSG 331 (373)
Q Consensus 290 ~~yd-~~~~~W~~~~~~~~~~-~~~~~--~~~~~~~~~~l~i~GG~ 331 (373)
|+.+ ...+.|+++-.++.+. ..... ....+..+|+|++....
T Consensus 171 Wvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~ 216 (230)
T TIGR01640 171 WVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED 216 (230)
T ss_pred EEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC
Confidence 7774 4456799765544321 11111 13345677888888764
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.98 E-value=1.2e-09 Score=68.46 Aligned_cols=49 Identities=27% Similarity=0.481 Sum_probs=43.2
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEe
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV 177 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 177 (373)
+++|||+||.+.......+++|+||+.+++|++++++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 5789999999743457789999999999999999999999999998863
No 36
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.90 E-value=4.5e-09 Score=65.90 Aligned_cols=48 Identities=21% Similarity=0.354 Sum_probs=42.7
Q ss_pred CCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEE
Q 017349 178 NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV 225 (373)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~ 225 (373)
+++||++||.+......++++++||+.+++|++++++|.+|..|++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 578999999974356678999999999999999999999999999876
No 37
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.88 E-value=7.1e-09 Score=65.00 Aligned_cols=48 Identities=27% Similarity=0.443 Sum_probs=41.7
Q ss_pred cceeeeeeEeCCeEEEEcCC-CCCCCCcCceEEEEeCCCCeEEeccCCc
Q 017349 168 PRSFFASGNVNGKIMAVGGT-GANINETMTAVECYDPESDTWTTAAKLR 215 (373)
Q Consensus 168 ~r~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 215 (373)
+|..|++++++++||++||. ........+++++||+++++|+.+++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 58899999999999999999 2125667899999999999999998764
No 38
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.82 E-value=5.9e-09 Score=64.88 Aligned_cols=45 Identities=24% Similarity=0.379 Sum_probs=40.5
Q ss_pred ccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCceeeccc
Q 017349 217 GLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD 261 (373)
Q Consensus 217 ~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~ 261 (373)
+|..+++++++++||++||........+.+++||+.+++|+++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 578899999999999999998767788999999999999999876
No 39
>smart00612 Kelch Kelch domain.
Probab=98.80 E-value=1.1e-08 Score=63.64 Aligned_cols=47 Identities=32% Similarity=0.548 Sum_probs=41.4
Q ss_pred eEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEECC
Q 017349 180 KIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGS 228 (373)
Q Consensus 180 ~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~ 228 (373)
+||++||.. .....+++++||+.+++|+.+++|+.+|..++++++++
T Consensus 1 ~iyv~GG~~--~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFD--GGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCC--CCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 589999986 45668899999999999999999999999998887764
No 40
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.79 E-value=7.6e-09 Score=64.99 Aligned_cols=47 Identities=21% Similarity=0.439 Sum_probs=31.0
Q ss_pred cceeeeeeEe-CCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCc
Q 017349 168 PRSFFASGNV-NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLR 215 (373)
Q Consensus 168 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 215 (373)
||..|+++.+ +++||++||.+. ....++++++||+.+++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~-~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDS-SGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE--TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCC-CCcccCCEEEEECCCCEEEECCCCC
Confidence 6889999988 589999999972 2368999999999999999998877
No 41
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.71 E-value=6.4e-06 Score=70.48 Aligned_cols=199 Identities=13% Similarity=0.103 Sum_probs=115.3
Q ss_pred eeEEEeeCCCCCeeeCCCCCCCCC-CCC--CceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCc
Q 017349 92 IQWQALDPRSGRWFVLPPMPCPKA-VCP--QAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTP 168 (373)
Q Consensus 92 ~~~~~~d~~~~~W~~~~~~~~~~~-~~~--~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~ 168 (373)
..+.++||.|++|..+|+.+.+.. ... ..+|......+-+|..+.....+ .....+.+|+..+++|+.+...+..
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~--~~~~~~~Vys~~~~~Wr~~~~~~~~ 91 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN--RNQSEHQVYTLGSNSWRTIECSPPH 91 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC--CCCccEEEEEeCCCCccccccCCCC
Confidence 458899999999999986553210 011 12222222223355555432111 1234789999999999998743321
Q ss_pred -ceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEe-ccCCccccc----cccEEEECCEEEEEeCccCCCcc
Q 017349 169 -RSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTT-AAKLRMGLA----RYDSAVMGSKMYVTEGWTWPFMF 242 (373)
Q Consensus 169 -r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~----~~~~~~~~~~lyv~gG~~~~~~~ 242 (373)
......+.++|.+|.+.... .......+..||..+++|++ ++ +|.... ....+.++|+|.++...... .
T Consensus 92 ~~~~~~~v~~~G~lyw~~~~~--~~~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~--~ 166 (230)
T TIGR01640 92 HPLKSRGVCINGVLYYLAYTL--KTNPDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQKKDT--N 166 (230)
T ss_pred ccccCCeEEECCEEEEEEEEC--CCCCcEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEecCCC--C
Confidence 11122667899999887543 11112369999999999995 53 343322 33466778999887754311 1
Q ss_pred CCceEEEe-CCCCceeeccc-Cc--cCCc----ceEEEEECCeEEEEeeCCCc-ceEEEeCCCC
Q 017349 243 SPRGGVYD-INKDTWNLMSD-GM--KEGW----TGISIVLEGKLFVISEHGDC-PMKQYNPDDD 297 (373)
Q Consensus 243 ~~~i~~yd-~~~~~W~~~~~-~~--~~~~----~~~~~~~~~~l~v~gg~~~~-~~~~yd~~~~ 297 (373)
.-.|++.+ ...+.|++.-. ++ .... ....+..+|+|++....... .+..||++++
T Consensus 167 ~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 167 NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence 13566664 34567986422 11 1111 12236678898887653222 3888998865
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.66 E-value=6.7e-08 Score=60.54 Aligned_cols=45 Identities=22% Similarity=0.260 Sum_probs=39.3
Q ss_pred ccccccEEEECCEEEEEeCc--cCCCccCCceEEEeCCCCceeeccc
Q 017349 217 GLARYDSAVMGSKMYVTEGW--TWPFMFSPRGGVYDINKDTWNLMSD 261 (373)
Q Consensus 217 ~~~~~~~~~~~~~lyv~gG~--~~~~~~~~~i~~yd~~~~~W~~~~~ 261 (373)
+|..|++++++++||++||. .......+++++||+++++|++++.
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 57889999999999999999 4455667899999999999999875
No 43
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.64 E-value=4.2e-08 Score=61.55 Aligned_cols=45 Identities=16% Similarity=0.184 Sum_probs=30.8
Q ss_pred ccccccEEEE-CCEEEEEeCccCCCccCCceEEEeCCCCceeeccc
Q 017349 217 GLARYDSAVM-GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD 261 (373)
Q Consensus 217 ~~~~~~~~~~-~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~ 261 (373)
+|..|+++.+ +++||++||....+...+++++||+++++|+++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPS 46 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--S
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCC
Confidence 5788898888 68999999998777788999999999999999965
No 44
>smart00612 Kelch Kelch domain.
Probab=98.62 E-value=6.7e-08 Score=60.04 Aligned_cols=47 Identities=34% Similarity=0.617 Sum_probs=40.4
Q ss_pred EEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEeCC
Q 017349 131 KLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNG 179 (373)
Q Consensus 131 ~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~ 179 (373)
+||++||... ....+++++||+.+++|+.+++|+.+|..++++.+++
T Consensus 1 ~iyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG--GQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCC--CceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 4899999854 2457899999999999999999999999999887764
No 45
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.61 E-value=7.5e-06 Score=69.29 Aligned_cols=148 Identities=14% Similarity=0.221 Sum_probs=96.3
Q ss_pred eeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCC----CeEEecc-CCcccccccc
Q 017349 148 STIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPES----DTWTTAA-KLRMGLARYD 222 (373)
Q Consensus 148 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t----~~W~~~~-~~~~~~~~~~ 222 (373)
.-..||+.+++++.+......-+...+..-+|++.+.||.. . -...+..|++.+ ..|.+.+ .|..+|-+++
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~--~--G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT 122 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDN--D--GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPT 122 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCC--c--cccceEEEecCCCCCCCCceECcccccCCCcccc
Confidence 45689999999998764433333333344589999999985 2 234577888875 5798875 5888998888
Q ss_pred EEEE-CCEEEEEeCccCCCccCCceEEEeCCCC-----ceeeccc---CccCCcceEE-EEECCeEEEEeeCCCcceEEE
Q 017349 223 SAVM-GSKMYVTEGWTWPFMFSPRGGVYDINKD-----TWNLMSD---GMKEGWTGIS-IVLEGKLFVISEHGDCPMKQY 292 (373)
Q Consensus 223 ~~~~-~~~lyv~gG~~~~~~~~~~i~~yd~~~~-----~W~~~~~---~~~~~~~~~~-~~~~~~l~v~gg~~~~~~~~y 292 (373)
+..+ +|+++|+||... ...+.+..... .|..+.. ..+....... +.-+|+||+++.. .-..|
T Consensus 123 ~~~L~DG~vlIvGG~~~-----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~---~s~i~ 194 (243)
T PF07250_consen 123 ATTLPDGRVLIVGGSNN-----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR---GSIIY 194 (243)
T ss_pred ceECCCCCEEEEeCcCC-----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC---CcEEE
Confidence 7776 899999999862 22333333211 1222211 1222333333 4559999999875 67889
Q ss_pred eCCCCce-eeecCCCC
Q 017349 293 NPDDDTW-RYVGGDKF 307 (373)
Q Consensus 293 d~~~~~W-~~~~~~~~ 307 (373)
|++++++ ..++.+|-
T Consensus 195 d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 195 DYKTNTVVRTLPDLPG 210 (243)
T ss_pred eCCCCeEEeeCCCCCC
Confidence 9999977 56775553
No 46
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.61 E-value=3.5e-06 Score=71.29 Aligned_cols=149 Identities=10% Similarity=0.139 Sum_probs=91.9
Q ss_pred eEEEEeCCCCeEEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCC----CceeecccCccCCcceEE-
Q 017349 197 AVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINK----DTWNLMSDGMKEGWTGIS- 271 (373)
Q Consensus 197 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~----~~W~~~~~~~~~~~~~~~- 271 (373)
-...||+.+++++.+.-.........+..-+|++..+||... ....+-.|++.+ ..|.+....+..+|...+
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~---G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~ 123 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDND---GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA 123 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCc---cccceEEEecCCCCCCCCceECcccccCCCccccc
Confidence 356799999999988643333222233344899999999863 234677788765 679888654666665554
Q ss_pred -EEECCeEEEEeeCCCcceEEEeCCCC-----ceeeecCCCCCCcccccceEEEEeCCEEEEEeCCceeeeeEEEEeecC
Q 017349 272 -IVLEGKLFVISEHGDCPMKQYNPDDD-----TWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEEQNG 345 (373)
Q Consensus 272 -~~~~~~l~v~gg~~~~~~~~yd~~~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d 345 (373)
..-+|+++|+||......+.+..... .|..+.......+.-.+.+..+.-+|+||+++... ..+ ||
T Consensus 124 ~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~----s~i----~d 195 (243)
T PF07250_consen 124 TTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG----SII----YD 195 (243)
T ss_pred eECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC----cEE----Ee
Confidence 33489999999986444444443221 12222211111122366788888999999999852 223 45
Q ss_pred Ccccce-EEecC
Q 017349 346 GISAEW-KVMTA 356 (373)
Q Consensus 346 ~~~~~W-~~~~~ 356 (373)
..++++ +.++.
T Consensus 196 ~~~n~v~~~lP~ 207 (243)
T PF07250_consen 196 YKTNTVVRTLPD 207 (243)
T ss_pred CCCCeEEeeCCC
Confidence 555654 45543
No 47
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.60 E-value=3.7e-08 Score=61.12 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=36.2
Q ss_pred CCCCChHHHHHhhccCCccchhhhhhhcHhHHhhccCchhh
Q 017349 27 IPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFA 67 (373)
Q Consensus 27 ~~~LP~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~~~~~~ 67 (373)
|..||+|++.+||.+++..++.++..|||+|+.+..++.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW 41 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLW 41 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhh
Confidence 57899999999999999999999999999999999888655
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.55 E-value=3e-06 Score=72.91 Aligned_cols=272 Identities=14% Similarity=0.141 Sum_probs=146.0
Q ss_pred CCCCCCCCC----hHHHHHhhccCCccchhhhhhhcHhHHhhccCchhhHh------------hhhccCCCCEEEEEEec
Q 017349 23 TQPLIPGLP----DEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFALC------------KKSLSLSLPYLFIFSFH 86 (373)
Q Consensus 23 ~~~~~~~LP----~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~~~~~~~~------------~~~~~~~~~~l~~~gg~ 86 (373)
+...+..|| +++.++||+.|...+|..+..|||+|+.+++++.+.+. |..+...+...|.|-..
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr~dslWrgl~e~rqw~~~lf~~r 150 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMVRTDSLWRGLSERRQWDQYLFKNR 150 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhcchHHHHhhhhhccCcchhhccCC
Confidence 356677899 99999999999999999999999999999999976541 11122223333443221
Q ss_pred CCCC---ceeEEE--e-------eCCCCCeeeC----CCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeE
Q 017349 87 KPTA---RIQWQA--L-------DPRSGRWFVL----PPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTI 150 (373)
Q Consensus 87 ~~~~---~~~~~~--~-------d~~~~~W~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~ 150 (373)
+... .+.++. | +...+.|..- ..+.++.... .+.-|... ++...|.|-. -+.+-
T Consensus 151 ~~~~~~~~n~f~~~l~pki~~di~~idsNWr~Gr~~~~rinc~Se~s-kgVYClQY--DD~kiVSGlr-------DnTik 220 (499)
T KOG0281|consen 151 PNDGGFPPNSFYRLLYPKIIQDIETIESNWRCGRHLLQRINCRSENS-KGVYCLQY--DDEKIVSGLR-------DNTIK 220 (499)
T ss_pred CCcCCcCCCcchhhhhHHHHHHHhhhhcchhccceeeeeecCCcccC-CceEEEEe--cchhhhcccc-------cCceE
Confidence 1111 111110 0 2234556432 2233322111 22223333 5555555433 22566
Q ss_pred EEeCCCCceeccCCCCCcceeeeeeE-eCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEE----E
Q 017349 151 MYRATTNQWQLASPMLTPRSFFASGN-VNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSA----V 225 (373)
Q Consensus 151 ~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~----~ 225 (373)
+||..+..-..+ .....+..++. +++++.+-|..+ ..+.++|.+|+.-- ....+|.-+ .
T Consensus 221 iWD~n~~~c~~~---L~GHtGSVLCLqyd~rviisGSSD-------sTvrvWDv~tge~l------~tlihHceaVLhlr 284 (499)
T KOG0281|consen 221 IWDKNSLECLKI---LTGHTGSVLCLQYDERVIVSGSSD-------STVRVWDVNTGEPL------NTLIHHCEAVLHLR 284 (499)
T ss_pred EeccccHHHHHh---hhcCCCcEEeeeccceEEEecCCC-------ceEEEEeccCCchh------hHHhhhcceeEEEE
Confidence 666554432111 12233333333 467766655544 46888988887521 112223322 2
Q ss_pred ECCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEE-EEECCeEEEEeeCCCcceEEEeCCCCceeeecC
Q 017349 226 MGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGIS-IVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGG 304 (373)
Q Consensus 226 ~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~ 304 (373)
+++.+.+....+ .++-++|..+-+=..+..-+...+.... +-++++ |++...+...+.+++..+......-
T Consensus 285 f~ng~mvtcSkD------rsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k-yIVsASgDRTikvW~~st~efvRtl- 356 (499)
T KOG0281|consen 285 FSNGYMVTCSKD------RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWSTSTCEFVRTL- 356 (499)
T ss_pred EeCCEEEEecCC------ceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-eEEEecCCceEEEEeccceeeehhh-
Confidence 344555555544 5677777765541111111222232222 456788 5544444668899998887776542
Q ss_pred CCCCCcccccceEEEEeCCEEEEEeCCce
Q 017349 305 DKFPCEVMHRPFAVNGVEGKIYVVSSGLN 333 (373)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~i~GG~~~ 333 (373)
.-- .++-++..+.|+++|-|-..+
T Consensus 357 -~gH----kRGIAClQYr~rlvVSGSSDn 380 (499)
T KOG0281|consen 357 -NGH----KRGIACLQYRDRLVVSGSSDN 380 (499)
T ss_pred -hcc----cccceehhccCeEEEecCCCc
Confidence 212 567788889999988886543
No 49
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.50 E-value=5.3e-05 Score=68.01 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=34.5
Q ss_pred CCCCCCChHHHHHhhccCCc-cchhhhhhhcHhHHhhccC
Q 017349 25 PLIPGLPDEIGELCLLHVPY-PYQALVRSVSYSWNKAITD 63 (373)
Q Consensus 25 ~~~~~LP~dl~~~il~rlp~-~~l~~~~~v~k~W~~l~~~ 63 (373)
..|+.||+||+..|..|||. .++.++++||+.||+-+..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 45899999999999999974 5899999999999997653
No 50
>PLN02772 guanylate kinase
Probab=98.29 E-value=6e-06 Score=74.29 Aligned_cols=84 Identities=15% Similarity=0.241 Sum_probs=66.3
Q ss_pred CcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEec---cCCccccccccEEEE-CCEEEEEeCccCCCcc
Q 017349 167 TPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTA---AKLRMGLARYDSAVM-GSKMYVTEGWTWPFMF 242 (373)
Q Consensus 167 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~~~~~~~~~~-~~~lyv~gG~~~~~~~ 242 (373)
.++..++++.+++++||+||.+. .....+.+++||..|++|... ...|.+|.+|+++++ +++|+|+++....
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d-~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--- 98 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHE-GNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--- 98 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCC-CccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence 47888999999999999999862 333678999999999999865 478889999999988 6899999865422
Q ss_pred CCceEEEeCCCC
Q 017349 243 SPRGGVYDINKD 254 (373)
Q Consensus 243 ~~~i~~yd~~~~ 254 (373)
..+++.....|.
T Consensus 99 ~~~~w~l~~~t~ 110 (398)
T PLN02772 99 DDSIWFLEVDTP 110 (398)
T ss_pred ccceEEEEcCCH
Confidence 256666666554
No 51
>PF13854 Kelch_5: Kelch motif
Probab=98.27 E-value=2.7e-06 Score=51.09 Aligned_cols=42 Identities=24% Similarity=0.195 Sum_probs=35.3
Q ss_pred CCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCC
Q 017349 165 MLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESD 206 (373)
Q Consensus 165 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~ 206 (373)
+|.+|..|+++.++++||++||.........+++++||..+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 477999999999999999999997223567889999998763
No 52
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.25 E-value=7.3e-07 Score=53.45 Aligned_cols=38 Identities=37% Similarity=0.440 Sum_probs=36.1
Q ss_pred CChHHHHHhhccCCccchhhhhhhcHhHHhhccCchhh
Q 017349 30 LPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFA 67 (373)
Q Consensus 30 LP~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~~~~~~ 67 (373)
||+|++.+|+.+++..++.+++.|||+|+.++..+.+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~ 38 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFW 38 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhh
Confidence 79999999999999999999999999999999988775
No 53
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.25 E-value=2.5e-07 Score=57.72 Aligned_cols=43 Identities=23% Similarity=0.237 Sum_probs=36.4
Q ss_pred CCCCCChHHHHHhhccCCccchhhhhhhcHhHHhhccCchhhH
Q 017349 26 LIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFAL 68 (373)
Q Consensus 26 ~~~~LP~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~~~~~~~ 68 (373)
.|..||+|++.+|+.+++..++.+++.|||+|++++.++.+..
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~ 44 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWK 44 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccH
Confidence 3668999999999999999999999999999999999987653
No 54
>PF13854 Kelch_5: Kelch motif
Probab=98.18 E-value=4.7e-06 Score=50.07 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=35.4
Q ss_pred CccccccccEEEECCEEEEEeCccC-CCccCCceEEEeCCC
Q 017349 214 LRMGLARYDSAVMGSKMYVTEGWTW-PFMFSPRGGVYDINK 253 (373)
Q Consensus 214 ~~~~~~~~~~~~~~~~lyv~gG~~~-~~~~~~~i~~yd~~~ 253 (373)
+|.+|..|++++++++||++||... .....+++++||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4788999999999999999999984 667778999999876
No 55
>PLN02772 guanylate kinase
Probab=98.09 E-value=2.2e-05 Score=70.70 Aligned_cols=82 Identities=22% Similarity=0.200 Sum_probs=60.5
Q ss_pred cccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCceeeccc--CccCCcceEE-EEE-CCeEEEEeeCC--Ccce
Q 017349 216 MGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD--GMKEGWTGIS-IVL-EGKLFVISEHG--DCPM 289 (373)
Q Consensus 216 ~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~--~~~~~~~~~~-~~~-~~~l~v~gg~~--~~~~ 289 (373)
.++..++++.+++++|++||.++.....+.+++||..+++|..... ..|.++.+++ +++ +++|+|+++.. ..++
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~~ 102 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDSI 102 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCccce
Confidence 3566788999999999999987654467899999999999987543 3444554444 444 79999998654 5677
Q ss_pred EEEeCCCC
Q 017349 290 KQYNPDDD 297 (373)
Q Consensus 290 ~~yd~~~~ 297 (373)
|-...++.
T Consensus 103 w~l~~~t~ 110 (398)
T PLN02772 103 WFLEVDTP 110 (398)
T ss_pred EEEEcCCH
Confidence 77666553
No 56
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.08 E-value=0.0057 Score=56.90 Aligned_cols=223 Identities=14% Similarity=0.128 Sum_probs=127.0
Q ss_pred CCCEEEEEEecCCCCceeEEEeeCCCCC--eeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEe
Q 017349 76 SLPYLFIFSFHKPTARIQWQALDPRSGR--WFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYR 153 (373)
Q Consensus 76 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd 153 (373)
.++.+|+.. ....++.+|..+.+ |+.-..-+ ..+.-++ .++.||+..+ ...++.+|
T Consensus 119 ~~~~v~v~~-----~~g~l~ald~~tG~~~W~~~~~~~--------~~ssP~v-~~~~v~v~~~--------~g~l~ald 176 (394)
T PRK11138 119 AGGKVYIGS-----EKGQVYALNAEDGEVAWQTKVAGE--------ALSRPVV-SDGLVLVHTS--------NGMLQALN 176 (394)
T ss_pred ECCEEEEEc-----CCCEEEEEECCCCCCcccccCCCc--------eecCCEE-ECCEEEEECC--------CCEEEEEE
Confidence 366777643 23458899987654 76532211 1111122 2788887533 22699999
Q ss_pred CCCCc--eeccCCCCC--cceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCe--EEeccCCccc-----c---c
Q 017349 154 ATTNQ--WQLASPMLT--PRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDT--WTTAAKLRMG-----L---A 219 (373)
Q Consensus 154 ~~t~~--W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~-----~---~ 219 (373)
+.+++ |+.-...+. .+...+.+..++.+|+..+. ..+..+|+.+++ |+.-...+.. + .
T Consensus 177 ~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~--------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~ 248 (394)
T PRK11138 177 ESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN--------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDV 248 (394)
T ss_pred ccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC--------CEEEEEEccCChhhheeccccCCCccchhccccc
Confidence 98884 876433221 12223344556777765432 247788888774 8643211111 0 1
Q ss_pred cccEEEECCEEEEEeCccCCCccCCceEEEeCCCCc--eeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEeCCCC
Q 017349 220 RYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT--WNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDD 297 (373)
Q Consensus 220 ~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~ 297 (373)
..+.++.++.+|+.+.. ..++++|+.+++ |+.-.. . ....++.+++||+.... ..+..+|.+++
T Consensus 249 ~~sP~v~~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~~---~--~~~~~~~~~~vy~~~~~--g~l~ald~~tG 314 (394)
T PRK11138 249 DTTPVVVGGVVYALAYN-------GNLVALDLRSGQIVWKREYG---S--VNDFAVDGGRIYLVDQN--DRVYALDTRGG 314 (394)
T ss_pred CCCcEEECCEEEEEEcC-------CeEEEEECCCCCEEEeecCC---C--ccCcEEECCEEEEEcCC--CeEEEEECCCC
Confidence 12345668999986532 468999998875 875211 1 11125679999998754 48999999876
Q ss_pred --ceeeecCCCCCCcccccceEEEEeCCEEEEEeCCceeeeeEEEEeecCCcccceEE
Q 017349 298 --TWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEEQNGGISAEWKV 353 (373)
Q Consensus 298 --~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~W~~ 353 (373)
.|+.-. .. . ....+.+..+++||+.... +.++....+..+..|+.
T Consensus 315 ~~~W~~~~---~~-~--~~~~sp~v~~g~l~v~~~~-----G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 315 VELWSQSD---LL-H--RLLTAPVLYNGYLVVGDSE-----GYLHWINREDGRFVAQQ 361 (394)
T ss_pred cEEEcccc---cC-C--CcccCCEEECCEEEEEeCC-----CEEEEEECCCCCEEEEE
Confidence 475421 11 0 2223445678998876442 34444445566677774
No 57
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.07 E-value=0.0053 Score=57.12 Aligned_cols=231 Identities=14% Similarity=0.162 Sum_probs=129.8
Q ss_pred cCCCCEEEEEEecCCCCceeEEEeeCCCCC--eeeCCCCCCCCC----CCCCceEEEEeccCCEEEEEcCccCCCCCCcc
Q 017349 74 SLSLPYLFIFSFHKPTARIQWQALDPRSGR--WFVLPPMPCPKA----VCPQAFACTSLPRQGKLFVLGGMRSDTETPMQ 147 (373)
Q Consensus 74 ~~~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~ 147 (373)
...++.+|+... ...+++||..+.+ |+.-..-..... .....-+.++. +++||+.+. ..
T Consensus 66 vv~~~~vy~~~~-----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~v~v~~~--------~g 130 (394)
T PRK11138 66 AVAYNKVYAADR-----AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA--GGKVYIGSE--------KG 130 (394)
T ss_pred EEECCEEEEECC-----CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE--CCEEEEEcC--------CC
Confidence 345788888643 2358889987654 765322110000 00011112333 788887532 22
Q ss_pred eeEEEeCCCC--ceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCe--EEeccCCccc--cccc
Q 017349 148 STIMYRATTN--QWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDT--WTTAAKLRMG--LARY 221 (373)
Q Consensus 148 ~~~~yd~~t~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~--~~~~ 221 (373)
.++.+|..++ .|+.-..- ....+.+..++++|+..+. ..++.+|+++++ |+.-...+.. +...
T Consensus 131 ~l~ald~~tG~~~W~~~~~~---~~~ssP~v~~~~v~v~~~~--------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~ 199 (394)
T PRK11138 131 QVYALNAEDGEVAWQTKVAG---EALSRPVVSDGLVLVHTSN--------GMLQALNESDGAVKWTVNLDVPSLTLRGES 199 (394)
T ss_pred EEEEEECCCCCCcccccCCC---ceecCCEEECCEEEEECCC--------CEEEEEEccCCCEeeeecCCCCcccccCCC
Confidence 6999999887 58653221 1122334567888875432 258999999875 8765332211 1223
Q ss_pred cEEEECCEEEEEeCccCCCccCCceEEEeCCCCc--eeec-ccCccCC-------cceEEEEECCeEEEEeeCCCcceEE
Q 017349 222 DSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT--WNLM-SDGMKEG-------WTGISIVLEGKLFVISEHGDCPMKQ 291 (373)
Q Consensus 222 ~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~--W~~~-~~~~~~~-------~~~~~~~~~~~l~v~gg~~~~~~~~ 291 (373)
+.++.++.+|+..+. ..+.++|.++++ |+.- ..+.... .....++.++.+|+.+. ...+..
T Consensus 200 sP~v~~~~v~~~~~~-------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~--~g~l~a 270 (394)
T PRK11138 200 APATAFGGAIVGGDN-------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY--NGNLVA 270 (394)
T ss_pred CCEEECCEEEEEcCC-------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc--CCeEEE
Confidence 344567777765432 468889998875 8642 2111100 01122567999998764 348999
Q ss_pred EeCCCC--ceeeecCCCCCCcccccceEEEEeCCEEEEEeCCceeeeeEEEEeecCCcccceEE
Q 017349 292 YNPDDD--TWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEEQNGGISAEWKV 353 (373)
Q Consensus 292 yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~W~~ 353 (373)
+|++++ .|+.-- ..+ ...+..+++||+.... +.++....+..+..|+.
T Consensus 271 ld~~tG~~~W~~~~--~~~-------~~~~~~~~~vy~~~~~-----g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 271 LDLRSGQIVWKREY--GSV-------NDFAVDGGRIYLVDQN-----DRVYALDTRGGVELWSQ 320 (394)
T ss_pred EECCCCCEEEeecC--CCc-------cCcEEECCEEEEEcCC-----CeEEEEECCCCcEEEcc
Confidence 999876 476521 111 2346678899987642 34555444455667864
No 58
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.95 E-value=0.0013 Score=55.73 Aligned_cols=118 Identities=17% Similarity=0.118 Sum_probs=77.3
Q ss_pred EEE-EEcCccCCCCCCcceeEEEeCCCCc---e--------eccCCCCCcceeeeeeEe----CCeEEEEcCCCC--C--
Q 017349 131 KLF-VLGGMRSDTETPMQSTIMYRATTNQ---W--------QLASPMLTPRSFFASGNV----NGKIMAVGGTGA--N-- 190 (373)
Q Consensus 131 ~i~-v~GG~~~~~~~~~~~~~~yd~~t~~---W--------~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~--~-- 190 (373)
.-| |-||.+.+. ..++++|+....... = ..+.+.|.+|+.|++-++ +....+|||.+- .
T Consensus 39 ~~YlIHGGrTPNN-ElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~q 117 (337)
T PF03089_consen 39 EQYLIHGGRTPNN-ELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQ 117 (337)
T ss_pred eeEEecCCcCCCc-ccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccc
Confidence 344 457776554 566778877655442 1 113578999999998765 235778899741 0
Q ss_pred --------CCCcCceEEEEeCCCCeEE--eccCCccccccccEEEECCEEEEEeCccCC-CccCCceEEE
Q 017349 191 --------INETMTAVECYDPESDTWT--TAAKLRMGLARYDSAVMGSKMYVTEGWTWP-FMFSPRGGVY 249 (373)
Q Consensus 191 --------~~~~~~~~~~yd~~t~~W~--~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~-~~~~~~i~~y 249 (373)
.-.....++..|++-+... .++.+..+.+.|.+..-++.+|++||..-. ..+...+++.
T Consensus 118 RTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rl 187 (337)
T PF03089_consen 118 RTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRL 187 (337)
T ss_pred cchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEE
Confidence 0122456788888888764 356777788888888889999999997632 2333455544
No 59
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.91 E-value=0.019 Score=53.09 Aligned_cols=223 Identities=14% Similarity=0.136 Sum_probs=123.5
Q ss_pred CCCCEEEEEEecCCCCceeEEEeeCCCCC--eeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEE
Q 017349 75 LSLPYLFIFSFHKPTARIQWQALDPRSGR--WFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMY 152 (373)
Q Consensus 75 ~~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~y 152 (373)
..++.+|+... ...++.||+.+.+ |..-..-. ..-+.++. ++.+|+.+. ...++.+
T Consensus 63 v~~~~v~v~~~-----~g~v~a~d~~tG~~~W~~~~~~~-------~~~~p~v~--~~~v~v~~~--------~g~l~al 120 (377)
T TIGR03300 63 VAGGKVYAADA-----DGTVVALDAETGKRLWRVDLDER-------LSGGVGAD--GGLVFVGTE--------KGEVIAL 120 (377)
T ss_pred EECCEEEEECC-----CCeEEEEEccCCcEeeeecCCCC-------cccceEEc--CCEEEEEcC--------CCEEEEE
Confidence 34677777542 2358899987665 75432211 11112222 777876532 1279999
Q ss_pred eCCCC--ceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCe--EEeccCCcc--ccccccEEEE
Q 017349 153 RATTN--QWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDT--WTTAAKLRM--GLARYDSAVM 226 (373)
Q Consensus 153 d~~t~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~--~~~~~~~~~~ 226 (373)
|..++ .|+.-..- . .....+..++++|+..+. ..++.+|+.+++ |+.-...+. .+...+.+..
T Consensus 121 d~~tG~~~W~~~~~~--~-~~~~p~v~~~~v~v~~~~--------g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~ 189 (377)
T TIGR03300 121 DAEDGKELWRAKLSS--E-VLSPPLVANGLVVVRTND--------GRLTALDAATGERLWTYSRVTPALTLRGSASPVIA 189 (377)
T ss_pred ECCCCcEeeeeccCc--e-eecCCEEECCEEEEECCC--------CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE
Confidence 99877 48653211 1 122334457777775432 358899998764 875432221 1122334555
Q ss_pred CCEEEEEeCccCCCccCCceEEEeCCCCc--eeec-ccCccCC-------cceEEEEECCeEEEEeeCCCcceEEEeCCC
Q 017349 227 GSKMYVTEGWTWPFMFSPRGGVYDINKDT--WNLM-SDGMKEG-------WTGISIVLEGKLFVISEHGDCPMKQYNPDD 296 (373)
Q Consensus 227 ~~~lyv~gG~~~~~~~~~~i~~yd~~~~~--W~~~-~~~~~~~-------~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~ 296 (373)
++.+|+ +..+ ..+..+|+.+++ |+.- ..+.... .....++.++.+|+.+. ...+..||+++
T Consensus 190 ~~~v~~-~~~~------g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~--~g~l~a~d~~t 260 (377)
T TIGR03300 190 DGGVLV-GFAG------GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY--QGRVAALDLRS 260 (377)
T ss_pred CCEEEE-ECCC------CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc--CCEEEEEECCC
Confidence 776654 3322 368899998774 8642 1111100 11122567888888764 34899999987
Q ss_pred C--ceeeecCCCCCCcccccceEEEEeCCEEEEEeCCceeeeeEEEEeecCCcccceEE
Q 017349 297 D--TWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEEQNGGISAEWKV 353 (373)
Q Consensus 297 ~--~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~W~~ 353 (373)
+ .|..- .. .....+..+++||+... .+.++..+.+.++..|+.
T Consensus 261 G~~~W~~~----~~-----~~~~p~~~~~~vyv~~~-----~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 261 GRVLWKRD----AS-----SYQGPAVDDNRLYVTDA-----DGVVVALDRRSGSELWKN 305 (377)
T ss_pred CcEEEeec----cC-----CccCceEeCCEEEEECC-----CCeEEEEECCCCcEEEcc
Confidence 6 36542 11 12334567888888753 234555445556667875
No 60
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.88 E-value=0.015 Score=52.73 Aligned_cols=120 Identities=19% Similarity=0.276 Sum_probs=79.7
Q ss_pred cCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCc---CceEEEE--e
Q 017349 128 RQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINET---MTAVECY--D 202 (373)
Q Consensus 128 ~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~---~~~~~~y--d 202 (373)
.+.+|+..+.. ..+.+||..+..-...|.++.+.....++.++++||++.......... ...+|++ +
T Consensus 75 ~gskIv~~d~~--------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~ 146 (342)
T PF07893_consen 75 HGSKIVAVDQS--------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYR 146 (342)
T ss_pred cCCeEEEEcCC--------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccc
Confidence 38899988543 258999999999888898887777777777899999998763111110 0144444 4
Q ss_pred C--------CCCeEEeccCCcccccc-------ccEEEE-CCEEEE-EeCccCCCccCCceEEEeCCCCceeeccc
Q 017349 203 P--------ESDTWTTAAKLRMGLAR-------YDSAVM-GSKMYV-TEGWTWPFMFSPRGGVYDINKDTWNLMSD 261 (373)
Q Consensus 203 ~--------~t~~W~~~~~~~~~~~~-------~~~~~~-~~~lyv-~gG~~~~~~~~~~i~~yd~~~~~W~~~~~ 261 (373)
+ ..-.|+.+++.|..... .+-+++ +..|+| +.+.. ...+.||+++.+|+.+.+
T Consensus 147 ~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 147 PPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred cccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCCcceeeccc
Confidence 2 12268888876654332 222344 456777 33321 358999999999999976
No 61
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.85 E-value=0.015 Score=53.79 Aligned_cols=155 Identities=17% Similarity=0.125 Sum_probs=87.9
Q ss_pred eeEEEeCCCC--ceeccCCCCCc-----c---eeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCe--EEeccCCc
Q 017349 148 STIMYRATTN--QWQLASPMLTP-----R---SFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDT--WTTAAKLR 215 (373)
Q Consensus 148 ~~~~yd~~t~--~W~~~~~~~~~-----r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~ 215 (373)
.++.+|+.++ .|+.--..+.. + ...+.+..++.+|+.... ..++.||+.+++ |+.-. .
T Consensus 201 ~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~--------g~l~a~d~~tG~~~W~~~~--~ 270 (377)
T TIGR03300 201 KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ--------GRVAALDLRSGRVLWKRDA--S 270 (377)
T ss_pred EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC--------CEEEEEECCCCcEEEeecc--C
Confidence 6888998877 47542111111 1 112334457788875432 258899998764 76531 1
Q ss_pred cccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCc--eeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEe
Q 017349 216 MGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT--WNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYN 293 (373)
Q Consensus 216 ~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd 293 (373)
.....+..+++||+.... ..++++|..+++ |+... .........++.+++||+... ...+..+|
T Consensus 271 ---~~~~p~~~~~~vyv~~~~-------G~l~~~d~~tG~~~W~~~~--~~~~~~ssp~i~g~~l~~~~~--~G~l~~~d 336 (377)
T TIGR03300 271 ---SYQGPAVDDNRLYVTDAD-------GVVVALDRRSGSELWKNDE--LKYRQLTAPAVVGGYLVVGDF--EGYLHWLS 336 (377)
T ss_pred ---CccCceEeCCEEEEECCC-------CeEEEEECCCCcEEEcccc--ccCCccccCEEECCEEEEEeC--CCEEEEEE
Confidence 122344668899987532 468999998774 86532 111122222557888887654 44888999
Q ss_pred CCCCceeeecCCCCCCcccccceEEEEeCCEEEEEeC
Q 017349 294 PDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSS 330 (373)
Q Consensus 294 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG 330 (373)
..+++-.. ..+.... ....+.+..+++||+.+.
T Consensus 337 ~~tG~~~~--~~~~~~~--~~~~sp~~~~~~l~v~~~ 369 (377)
T TIGR03300 337 REDGSFVA--RLKTDGS--GIASPPVVVGDGLLVQTR 369 (377)
T ss_pred CCCCCEEE--EEEcCCC--ccccCCEEECCEEEEEeC
Confidence 87663221 1122200 123444677888887665
No 62
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.72 E-value=0.005 Score=55.83 Aligned_cols=123 Identities=20% Similarity=0.275 Sum_probs=80.6
Q ss_pred eCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEECCEEEEEeCccCCCccC----CceEE--Ee
Q 017349 177 VNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFS----PRGGV--YD 250 (373)
Q Consensus 177 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~----~~i~~--yd 250 (373)
.+++|+.++... .+.+||..|..-...|.++.+.....++.++++||++.......... ..+++ |+
T Consensus 75 ~gskIv~~d~~~--------~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~ 146 (342)
T PF07893_consen 75 HGSKIVAVDQSG--------RTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYR 146 (342)
T ss_pred cCCeEEEEcCCC--------CeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccc
Confidence 588999886542 38899999999888888888777777778899999997654321110 03344 44
Q ss_pred C--------CCCceeecccCccCCcc------eEE-EEE-CCeEEE-EeeCCCcceEEEeCCCCceeeecCCCCC
Q 017349 251 I--------NKDTWNLMSDGMKEGWT------GIS-IVL-EGKLFV-ISEHGDCPMKQYNPDDDTWRYVGGDKFP 308 (373)
Q Consensus 251 ~--------~~~~W~~~~~~~~~~~~------~~~-~~~-~~~l~v-~gg~~~~~~~~yd~~~~~W~~~~~~~~~ 308 (373)
. ..-.|+.++.|+-.... -.+ +++ +..|+| +.+. ....+.||..+.+|+.++.-.+|
T Consensus 147 ~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~-~~GTysfDt~~~~W~~~GdW~LP 220 (342)
T PF07893_consen 147 PPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGR-RWGTYSFDTESHEWRKHGDWMLP 220 (342)
T ss_pred cccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCC-ceEEEEEEcCCcceeeccceecC
Confidence 2 22257787663321111 122 666 667887 4432 12589999999999999884444
No 63
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.53 E-value=0.028 Score=48.50 Aligned_cols=214 Identities=18% Similarity=0.239 Sum_probs=116.6
Q ss_pred CCEEEEEEecCCCCceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCC
Q 017349 77 LPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATT 156 (373)
Q Consensus 77 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t 156 (373)
++.||+.. .....++.+|+.+..-... ..+ ...+++....++.+|+.... ...++|+.+
T Consensus 11 ~g~l~~~D----~~~~~i~~~~~~~~~~~~~-~~~-------~~~G~~~~~~~g~l~v~~~~---------~~~~~d~~~ 69 (246)
T PF08450_consen 11 DGRLYWVD----IPGGRIYRVDPDTGEVEVI-DLP-------GPNGMAFDRPDGRLYVADSG---------GIAVVDPDT 69 (246)
T ss_dssp TTEEEEEE----TTTTEEEEEETTTTEEEEE-ESS-------SEEEEEEECTTSEEEEEETT---------CEEEEETTT
T ss_pred CCEEEEEE----cCCCEEEEEECCCCeEEEE-ecC-------CCceEEEEccCCEEEEEEcC---------ceEEEecCC
Confidence 56677763 3345789999998866543 222 12455554347999988543 456679999
Q ss_pred CceeccCCCC-----CcceeeeeeEeCCeEEEEcCCCCCCCCcC--ceEEEEeCCCCeEEecc-CCccccccccEEEE-C
Q 017349 157 NQWQLASPML-----TPRSFFASGNVNGKIMAVGGTGANINETM--TAVECYDPESDTWTTAA-KLRMGLARYDSAVM-G 227 (373)
Q Consensus 157 ~~W~~~~~~~-----~~r~~~~~~~~~~~iyv~GG~~~~~~~~~--~~~~~yd~~t~~W~~~~-~~~~~~~~~~~~~~-~ 227 (373)
++++.+...+ ..+.+-.++.-++.+|+-.-.. ...... ..++++++. ++.+.+. .+..+ -..+.. +
T Consensus 70 g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~-~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~d 144 (246)
T PF08450_consen 70 GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGG-GGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPD 144 (246)
T ss_dssp TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECC-BCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETT
T ss_pred CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCC-CccccccccceEEECCC-CeEEEEecCcccc---cceEECCc
Confidence 9998876552 2233334444477888753221 011111 679999998 6655442 22211 123333 4
Q ss_pred C-EEEEEeCccCCCccCCceEEEeCCCCc--eeeccc--CccCC---cceEEEEECCeEEEEeeCCCcceEEEeCCCCce
Q 017349 228 S-KMYVTEGWTWPFMFSPRGGVYDINKDT--WNLMSD--GMKEG---WTGISIVLEGKLFVISEHGDCPMKQYNPDDDTW 299 (373)
Q Consensus 228 ~-~lyv~gG~~~~~~~~~~i~~yd~~~~~--W~~~~~--~~~~~---~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~W 299 (373)
+ .||+.-... ..|++||+.... +..... ..+.. -.+.++--+|+||+..- ....|.+||++.+.-
T Consensus 145 g~~lyv~ds~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~~~~I~~~~p~G~~~ 217 (246)
T PF08450_consen 145 GKTLYVADSFN------GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-GGGRIVVFDPDGKLL 217 (246)
T ss_dssp SSEEEEEETTT------TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-TTTEEEEEETTSCEE
T ss_pred chheeeccccc------ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-CCCEEEEECCCccEE
Confidence 4 577754332 679999986443 332111 11111 12333334789999743 356999999995555
Q ss_pred eeecCCCCCCcccccceEEEE---eCCEEEEEe
Q 017349 300 RYVGGDKFPCEVMHRPFAVNG---VEGKIYVVS 329 (373)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~G 329 (373)
..+. +|.+ ....++. -.+.|||.-
T Consensus 218 ~~i~-~p~~-----~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 218 REIE-LPVP-----RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEE--SSS-----SEEEEEEESTTSSEEEEEE
T ss_pred EEEc-CCCC-----CEEEEEEECCCCCEEEEEe
Confidence 5554 3322 2223332 236688764
No 64
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.50 E-value=0.032 Score=48.17 Aligned_cols=199 Identities=17% Similarity=0.139 Sum_probs=107.0
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEe--CCeEEEEcCCCCCCCCcCceEEEEeCCCC
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV--NGKIMAVGGTGANINETMTAVECYDPESD 206 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~ 206 (373)
++.+|+..- ....++++|+.++.-....... ..+++.. ++++|+..... ..++|+.++
T Consensus 11 ~g~l~~~D~-------~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~~~---------~~~~d~~~g 70 (246)
T PF08450_consen 11 DGRLYWVDI-------PGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADSGG---------IAVVDPDTG 70 (246)
T ss_dssp TTEEEEEET-------TTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEETTC---------EEEEETTTT
T ss_pred CCEEEEEEc-------CCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEcCc---------eEEEecCCC
Confidence 688888742 2348999999998765433222 3333433 68888886543 567799999
Q ss_pred eEEeccCCcc-----ccccccEEEECCEEEEEeCccCCCccC--CceEEEeCCCCceeecccCccCCcceEEEEECCe-E
Q 017349 207 TWTTAAKLRM-----GLARYDSAVMGSKMYVTEGWTWPFMFS--PRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGK-L 278 (373)
Q Consensus 207 ~W~~~~~~~~-----~~~~~~~~~~~~~lyv~gG~~~~~~~~--~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-l 278 (373)
+++.+...+. .+..-.++.-+|+||+..-........ ..++++++. ++.+.+...+.. -.+.+..-+++ |
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~-pNGi~~s~dg~~l 148 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGF-PNGIAFSPDGKTL 148 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESS-EEEEEEETTSSEE
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccc-ccceEECCcchhe
Confidence 9988866532 122222333478888864322111111 568999998 666555432211 12222333554 6
Q ss_pred EEEeeCCCcceEEEeCCCCc--eeeecCC-CCCCcccccceEEEE-eCCEEEEEeCCceeeeeEEEEeecCCcccceEEe
Q 017349 279 FVISEHGDCPMKQYNPDDDT--WRYVGGD-KFPCEVMHRPFAVNG-VEGKIYVVSSGLNVAIGRVYEEQNGGISAEWKVM 354 (373)
Q Consensus 279 ~v~gg~~~~~~~~yd~~~~~--W~~~~~~-~~~~~~~~~~~~~~~-~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~W~~~ 354 (373)
|+.. .....+++|++.... +...... ..+ ......-+++. -+|+||+..- ..+.|.. +|++...-..+
T Consensus 149 yv~d-s~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~g~pDG~~vD~~G~l~va~~----~~~~I~~--~~p~G~~~~~i 220 (246)
T PF08450_consen 149 YVAD-SFNGRIWRFDLDADGGELSNRRVFIDFP-GGPGYPDGLAVDSDGNLWVADW----GGGRIVV--FDPDGKLLREI 220 (246)
T ss_dssp EEEE-TTTTEEEEEEEETTTCCEEEEEEEEE-S-SSSCEEEEEEEBTTS-EEEEEE----TTTEEEE--EETTSCEEEEE
T ss_pred eecc-cccceeEEEeccccccceeeeeeEEEcC-CCCcCCCcceEcCCCCEEEEEc----CCCEEEE--ECCCccEEEEE
Confidence 6654 336789999986433 3322211 111 10012344444 4688999732 1224444 55555556677
Q ss_pred cCC
Q 017349 355 TAP 357 (373)
Q Consensus 355 ~~p 357 (373)
+.|
T Consensus 221 ~~p 223 (246)
T PF08450_consen 221 ELP 223 (246)
T ss_dssp E-S
T ss_pred cCC
Confidence 777
No 65
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.43 E-value=0.062 Score=45.87 Aligned_cols=182 Identities=19% Similarity=0.330 Sum_probs=105.7
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCCCCc--eeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCC
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRATTNQ--WQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESD 206 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~ 206 (373)
++.+|+..+ ...++++|..+++ |+.-.+ .+-.. .....++.+|+.... ..++.+|..++
T Consensus 36 ~~~v~~~~~--------~~~l~~~d~~tG~~~W~~~~~--~~~~~-~~~~~~~~v~v~~~~--------~~l~~~d~~tG 96 (238)
T PF13360_consen 36 GGRVYVASG--------DGNLYALDAKTGKVLWRFDLP--GPISG-APVVDGGRVYVGTSD--------GSLYALDAKTG 96 (238)
T ss_dssp TTEEEEEET--------TSEEEEEETTTSEEEEEEECS--SCGGS-GEEEETTEEEEEETT--------SEEEEEETTTS
T ss_pred CCEEEEEcC--------CCEEEEEECCCCCEEEEeecc--ccccc-eeeecccccccccce--------eeeEecccCCc
Confidence 899999832 2379999998884 665432 11111 146678888887632 26999998877
Q ss_pred e--EE-eccCCccc--cccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCc--eeecccCccCCc--------ceEE
Q 017349 207 T--WT-TAAKLRMG--LARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT--WNLMSDGMKEGW--------TGIS 271 (373)
Q Consensus 207 ~--W~-~~~~~~~~--~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~--W~~~~~~~~~~~--------~~~~ 271 (373)
+ |+ .....+.. .......+.++.+|+.... ..+.++|+++++ |+.-....+... .+..
T Consensus 97 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~ 169 (238)
T PF13360_consen 97 KVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS-------GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSP 169 (238)
T ss_dssp CEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC-------SEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEE
T ss_pred ceeeeeccccccccccccccCceEecCEEEEEecc-------CcEEEEecCCCcEEEEeecCCCCCCcceeeecccccce
Confidence 4 98 34332222 2233344457777766532 579999999885 765332111111 1222
Q ss_pred EEECCeEEEEeeCCCcceEEEeCCCCc--eeeecCCCCCCcccccceE-EEEeCCEEEEEeCCceeeeeEEEEeecCCcc
Q 017349 272 IVLEGKLFVISEHGDCPMKQYNPDDDT--WRYVGGDKFPCEVMHRPFA-VNGVEGKIYVVSSGLNVAIGRVYEEQNGGIS 348 (373)
Q Consensus 272 ~~~~~~l~v~gg~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~ 348 (373)
+..++.+|+..+.+ .+..+|.++++ |+.. .. ...+ ....++.||+... .+.++.+.....+
T Consensus 170 ~~~~~~v~~~~~~g--~~~~~d~~tg~~~w~~~----~~-----~~~~~~~~~~~~l~~~~~-----~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 170 VISDGRVYVSSGDG--RVVAVDLATGEKLWSKP----IS-----GIYSLPSVDGGTLYVTSS-----DGRLYALDLKTGK 233 (238)
T ss_dssp ECCTTEEEEECCTS--SEEEEETTTTEEEEEEC----SS------ECECEECCCTEEEEEET-----TTEEEEEETTTTE
T ss_pred EEECCEEEEEcCCC--eEEEEECCCCCEEEEec----CC-----CccCCceeeCCEEEEEeC-----CCEEEEEECCCCC
Confidence 34468888887653 46666999886 7332 11 1233 4566777887772 1344554455666
Q ss_pred cceE
Q 017349 349 AEWK 352 (373)
Q Consensus 349 ~~W~ 352 (373)
..|+
T Consensus 234 ~~W~ 237 (238)
T PF13360_consen 234 VVWQ 237 (238)
T ss_dssp EEEE
T ss_pred EEeE
Confidence 6665
No 66
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=97.29 E-value=0.019 Score=50.19 Aligned_cols=154 Identities=18% Similarity=0.338 Sum_probs=88.0
Q ss_pred CceEEEEeCCCCeEEeccCCccccccccEEE-ECCEEEEEeCccCCCccCCceEEEeCCCCceeecccC----ccCCcce
Q 017349 195 MTAVECYDPESDTWTTAAKLRMGLARYDSAV-MGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDG----MKEGWTG 269 (373)
Q Consensus 195 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~----~~~~~~~ 269 (373)
-..+-.||+.+.+|.....--... -..... -+++||+.|-..........+..||.++++|+.+... ++.+-..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 457889999999999885431111 122232 3778888876554443456789999999999887652 2222211
Q ss_pred EEEE--ECCeEEEEeeCC--CcceEEEeCCCCceeeecCCCCCCcccccceEEEE------------eCCEEEEEeCCce
Q 017349 270 ISIV--LEGKLFVISEHG--DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNG------------VEGKIYVVSSGLN 333 (373)
Q Consensus 270 ~~~~--~~~~l~v~gg~~--~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~------------~~~~l~i~GG~~~ 333 (373)
..+. -..++++.|... ...+..|| ..+|..+..-........+...++. .+++++++-|...
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~d--Gs~W~~i~~~~~~~~t~I~~l~~~~l~~~~~~~~~~~~~~~~Llv~G~l~ 171 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYD--GSSWSSIGSDILGSGTTIRGLQVLPLNSSSHDNSSLFDSDQVLLVTGSLN 171 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEc--CCceEeccccccCCCCEEEEEEEEeccccccccccccCCCcEEEEEeeEe
Confidence 1111 234577776533 44677776 5689999861122122222333332 3466777777644
Q ss_pred -eeeeEEEEeecCCcccceEE
Q 017349 334 -VAIGRVYEEQNGGISAEWKV 353 (373)
Q Consensus 334 -~~~~~~~~~~~d~~~~~W~~ 353 (373)
...+.+...-||.. .|..
T Consensus 172 ~~~~G~~saalydG~--~w~P 190 (281)
T PF12768_consen 172 LPDFGNASAALYDGT--SWTP 190 (281)
T ss_pred cCCCCcEEEEEECCC--EEEE
Confidence 34444444445554 5663
No 67
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.17 E-value=0.12 Score=44.02 Aligned_cols=163 Identities=15% Similarity=0.196 Sum_probs=92.4
Q ss_pred eeEEEeCCCC--ceeccCCCCCcceeee--eeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCe--EEeccCCccccccc
Q 017349 148 STIMYRATTN--QWQLASPMLTPRSFFA--SGNVNGKIMAVGGTGANINETMTAVECYDPESDT--WTTAAKLRMGLARY 221 (373)
Q Consensus 148 ~~~~yd~~t~--~W~~~~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~ 221 (373)
.+.++|+.++ .|+.-. ........ .+..++++|+..+. ..++.+|..+++ |+.-. +.+.. .
T Consensus 4 ~l~~~d~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~v~~~~~~--------~~l~~~d~~tG~~~W~~~~--~~~~~-~ 70 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDL--GPGIGGPVATAVPDGGRVYVASGD--------GNLYALDAKTGKVLWRFDL--PGPIS-G 70 (238)
T ss_dssp EEEEEETTTTEEEEEEEC--SSSCSSEEETEEEETTEEEEEETT--------SEEEEEETTTSEEEEEEEC--SSCGG-S
T ss_pred EEEEEECCCCCEEEEEEC--CCCCCCccceEEEeCCEEEEEcCC--------CEEEEEECCCCCEEEEeec--ccccc-c
Confidence 5677887766 366521 11122222 33478889888433 369999998885 76543 22211 2
Q ss_pred cEEEECCEEEEEeCccCCCccCCceEEEeCCCCc--eee-cccC-ccCCcceEE-EEECCeEEEEeeCCCcceEEEeCCC
Q 017349 222 DSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT--WNL-MSDG-MKEGWTGIS-IVLEGKLFVISEHGDCPMKQYNPDD 296 (373)
Q Consensus 222 ~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~--W~~-~~~~-~~~~~~~~~-~~~~~~l~v~gg~~~~~~~~yd~~~ 296 (373)
.....++.+|+.... +.++++|..+++ |+. .... ......... .+.++.+|+... ...+..+|+++
T Consensus 71 ~~~~~~~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~l~~~d~~t 141 (238)
T PF13360_consen 71 APVVDGGRVYVGTSD-------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS--SGKLVALDPKT 141 (238)
T ss_dssp GEEEETTEEEEEETT-------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET--CSEEEEEETTT
T ss_pred eeeecccccccccce-------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec--cCcEEEEecCC
Confidence 247778999888632 379999988775 983 4321 111222222 445667766653 44899999987
Q ss_pred C--ceeeecCCCCCCc----ccccceEEEEeCCEEEEEeCCc
Q 017349 297 D--TWRYVGGDKFPCE----VMHRPFAVNGVEGKIYVVSSGL 332 (373)
Q Consensus 297 ~--~W~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~GG~~ 332 (373)
+ .|+.-...+.-.. .......++..++.||+..+..
T Consensus 142 G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g 183 (238)
T PF13360_consen 142 GKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG 183 (238)
T ss_dssp TEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred CcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC
Confidence 7 4665432221100 0011234455568899888754
No 68
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.13 E-value=0.095 Score=44.81 Aligned_cols=104 Identities=12% Similarity=0.120 Sum_probs=63.9
Q ss_pred EEEEcCCCCCCCCcCceEEEEeCCCCe--------EE---eccCCccccccccEEEE--CC--EEEEEeCccC-------
Q 017349 181 IMAVGGTGANINETMTAVECYDPESDT--------WT---TAAKLRMGLARYDSAVM--GS--KMYVTEGWTW------- 238 (373)
Q Consensus 181 iyv~GG~~~~~~~~~~~~~~yd~~t~~--------W~---~~~~~~~~~~~~~~~~~--~~--~lyv~gG~~~------- 238 (373)
-++.||... .+....++++....+.. .+ .+.+.|.+|++|++-++ .| ...+|||..-
T Consensus 41 YlIHGGrTP-NNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 41 YLIHGGRTP-NNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred EEecCCcCC-CcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 344588762 34445667776554332 21 13588999999997554 33 3667788641
Q ss_pred ----C--CccCCceEEEeCCCCceeeccc-CccCCcceE-EEEECCeEEEEeeCC
Q 017349 239 ----P--FMFSPRGGVYDINKDTWNLMSD-GMKEGWTGI-SIVLEGKLFVISEHG 285 (373)
Q Consensus 239 ----~--~~~~~~i~~yd~~~~~W~~~~~-~~~~~~~~~-~~~~~~~l~v~gg~~ 285 (373)
+ -.....++..|++-+..+.... .+..+.+.+ +..-++.+|++||+.
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHS 174 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEE
Confidence 0 1223467788888888765432 133444444 467899999999975
No 69
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.98 E-value=0.024 Score=49.52 Aligned_cols=118 Identities=19% Similarity=0.360 Sum_probs=69.5
Q ss_pred EEEeCccCCCc-cCCceEEEeCCCCceeecccCccCCcceEE-EEECCeEEEEeeC-----CCcceEEEeCCCCceeeec
Q 017349 231 YVTEGWTWPFM-FSPRGGVYDINKDTWNLMSDGMKEGWTGIS-IVLEGKLFVISEH-----GDCPMKQYNPDDDTWRYVG 303 (373)
Q Consensus 231 yv~gG~~~~~~-~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~v~gg~-----~~~~~~~yd~~~~~W~~~~ 303 (373)
||-|-+...+. ....+..||+.+.+|..+...+. +..... .+-+++||+.|.. ....+..||.++.+|+.++
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~-G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~ 80 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGIS-GTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLG 80 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCCce-EEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecC
Confidence 44444443333 45789999999999999876422 222222 2347778877742 2557889999999999987
Q ss_pred CC---CCCCcccccceEEEE-eCCEEEEEeCCceeeeeEEEEeecCCcccceEEecC
Q 017349 304 GD---KFPCEVMHRPFAVNG-VEGKIYVVSSGLNVAIGRVYEEQNGGISAEWKVMTA 356 (373)
Q Consensus 304 ~~---~~~~~~~~~~~~~~~-~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~W~~~~~ 356 (373)
.. .+|.+ .....+.. ..+.+++.|.. ..+..+-..||. .+|..+..
T Consensus 81 ~~~s~~ipgp--v~a~~~~~~d~~~~~~aG~~---~~g~~~l~~~dG--s~W~~i~~ 130 (281)
T PF12768_consen 81 GGSSNSIPGP--VTALTFISNDGSNFWVAGRS---ANGSTFLMKYDG--SSWSSIGS 130 (281)
T ss_pred CcccccCCCc--EEEEEeeccCCceEEEecee---cCCCceEEEEcC--CceEeccc
Confidence 62 12311 22222222 23457776664 233444444654 47888766
No 70
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.86 E-value=0.25 Score=42.29 Aligned_cols=229 Identities=14% Similarity=0.182 Sum_probs=130.0
Q ss_pred EEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCC-CCCcceee
Q 017349 94 WQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASP-MLTPRSFF 172 (373)
Q Consensus 94 ~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~-~~~~r~~~ 172 (373)
+-.+||.+.+-... +++... +-|+..+ ..++..+|.-+. ..+.++|+.+..-++.+- ...+-.+.
T Consensus 85 iGhLdP~tGev~~y-pLg~Ga----~Phgiv~-gpdg~~Witd~~--------~aI~R~dpkt~evt~f~lp~~~a~~nl 150 (353)
T COG4257 85 IGHLDPATGEVETY-PLGSGA----SPHGIVV-GPDGSAWITDTG--------LAIGRLDPKTLEVTRFPLPLEHADANL 150 (353)
T ss_pred ceecCCCCCceEEE-ecCCCC----CCceEEE-CCCCCeeEecCc--------ceeEEecCcccceEEeecccccCCCcc
Confidence 34578888887775 333222 3344433 337777776332 278899998876555431 11222222
Q ss_pred eeeEe--CCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCcccccccc-EEEECCEEEEEeCccCCCccCCceEEE
Q 017349 173 ASGNV--NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYD-SAVMGSKMYVTEGWTWPFMFSPRGGVY 249 (373)
Q Consensus 173 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~-~~~~~~~lyv~gG~~~~~~~~~~i~~y 249 (373)
...++ .+.++..|-.. . --++||.++.-+..+.. ....-.. ++.-+|.+|+..=.. +.|...
T Consensus 151 et~vfD~~G~lWFt~q~G--~------yGrLdPa~~~i~vfpaP-qG~gpyGi~atpdGsvwyaslag------naiari 215 (353)
T COG4257 151 ETAVFDPWGNLWFTGQIG--A------YGRLDPARNVISVFPAP-QGGGPYGICATPDGSVWYASLAG------NAIARI 215 (353)
T ss_pred cceeeCCCccEEEeeccc--c------ceecCcccCceeeeccC-CCCCCcceEECCCCcEEEEeccc------cceEEc
Confidence 23333 35677665432 1 11567777665444322 2222222 334488888874322 568888
Q ss_pred eCCCCceeecccCcc--CCcceEEEEECCeEEEEeeCCCcceEEEeCCCCceeeecCCCCCCcccccceEEE-EeCCEEE
Q 017349 250 DINKDTWNLMSDGMK--EGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVN-GVEGKIY 326 (373)
Q Consensus 250 d~~~~~W~~~~~~~~--~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~ 326 (373)
|+.+..=+.++.|.. .......+--.+++++.. .+...+++||+...+|.+-. +| ...-+..++- --.|+++
T Consensus 216 dp~~~~aev~p~P~~~~~gsRriwsdpig~~witt-wg~g~l~rfdPs~~sW~eyp---LP-gs~arpys~rVD~~grVW 290 (353)
T COG4257 216 DPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITT-WGTGSLHRFDPSVTSWIEYP---LP-GSKARPYSMRVDRHGRVW 290 (353)
T ss_pred ccccCCcceecCCCcccccccccccCccCcEEEec-cCCceeeEeCcccccceeee---CC-CCCCCcceeeeccCCcEE
Confidence 998886566554322 122222244467777763 23569999999999999974 44 2223444443 3346666
Q ss_pred EEeCCceeeeeEEEEeecCCcccceEEecCCCCcCc
Q 017349 327 VVSSGLNVAIGRVYEEQNGGISAEWKVMTAPRAFKD 362 (373)
Q Consensus 327 i~GG~~~~~~~~~~~~~~d~~~~~W~~~~~p~~~~~ 362 (373)
+--- ..+.+-. ||+++.+-++++.|++-.+
T Consensus 291 ~sea----~agai~r--fdpeta~ftv~p~pr~n~g 320 (353)
T COG4257 291 LSEA----DAGAIGR--FDPETARFTVLPIPRPNSG 320 (353)
T ss_pred eecc----ccCceee--cCcccceEEEecCCCCCCC
Confidence 5322 2223333 9999999999999887665
No 71
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.00087 Score=57.53 Aligned_cols=45 Identities=18% Similarity=0.028 Sum_probs=39.9
Q ss_pred CCCCCCCCChHHHHHhhccCCccchhhhhhhcHhHHhhccCchhh
Q 017349 23 TQPLIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFA 67 (373)
Q Consensus 23 ~~~~~~~LP~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~~~~~~ 67 (373)
+.-.|-+||||+++.|++.|+.+.+.++..|||||..+.++...+
T Consensus 94 pgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW 138 (419)
T KOG2120|consen 94 PGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW 138 (419)
T ss_pred CCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence 344578999999999999999999999999999999998877653
No 72
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.79 E-value=0.23 Score=42.64 Aligned_cols=192 Identities=11% Similarity=0.029 Sum_probs=111.4
Q ss_pred CceEEEEec-cCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCce
Q 017349 119 QAFACTSLP-RQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTA 197 (373)
Q Consensus 119 ~~~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 197 (373)
..|...... .++.+|..-|.. ..+.+.++|+.|++-.+..+++..-..-+++..+++||..-=. ...
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~y-----G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk-------~~~ 111 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLY-----GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK-------EGT 111 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECST-----TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS-------SSE
T ss_pred cccCccEEecCCCEEEEeCCCC-----CcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec-------CCe
Confidence 455555443 488999988873 3568999999999877666777666777889999999998433 356
Q ss_pred EEEEeCCCCeEEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCcee-eccc---CccCCcceEEEE
Q 017349 198 VECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWN-LMSD---GMKEGWTGISIV 273 (373)
Q Consensus 198 ~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~-~~~~---~~~~~~~~~~~~ 273 (373)
.++||+.+ .+.+...+.+..+.+.+..+..|++.-|. +.++..|+++-+=. .+.. ..+.....-.-.
T Consensus 112 ~f~yd~~t--l~~~~~~~y~~EGWGLt~dg~~Li~SDGS-------~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~ 182 (264)
T PF05096_consen 112 GFVYDPNT--LKKIGTFPYPGEGWGLTSDGKRLIMSDGS-------SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY 182 (264)
T ss_dssp EEEEETTT--TEEEEEEE-SSS--EEEECSSCEEEE-SS-------SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE
T ss_pred EEEEcccc--ceEEEEEecCCcceEEEcCCCEEEEECCc-------cceEEECCcccceEEEEEEEECCEECCCcEeEEE
Confidence 89999976 45555555556677777667778877664 47889998753321 1111 111122222234
Q ss_pred ECCeEEEEeeCCCcceEEEeCCCCcee---eecCCCC----CC---cccccceEEEE--eCCEEEEEeCCc
Q 017349 274 LEGKLFVISEHGDCPMKQYNPDDDTWR---YVGGDKF----PC---EVMHRPFAVNG--VEGKIYVVSSGL 332 (373)
Q Consensus 274 ~~~~l~v~gg~~~~~~~~yd~~~~~W~---~~~~~~~----~~---~~~~~~~~~~~--~~~~l~i~GG~~ 332 (373)
++|.||.== ...+.|.+.||++++-. .+..+-. .. +....-.+.+. -++++||.|-..
T Consensus 183 i~G~IyANV-W~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~W 252 (264)
T PF05096_consen 183 INGKIYANV-WQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLW 252 (264)
T ss_dssp ETTEEEEEE-TTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-
T ss_pred EcCEEEEEe-CCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCC
Confidence 578777521 22678999999998543 3332110 00 00112344444 468899999753
No 73
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.79 E-value=0.15 Score=46.44 Aligned_cols=192 Identities=10% Similarity=0.069 Sum_probs=107.6
Q ss_pred eEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEe--CCe-EEEEcCCCCCCCCcCce
Q 017349 121 FACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV--NGK-IMAVGGTGANINETMTA 197 (373)
Q Consensus 121 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~ 197 (373)
..+..+-....+.+.+|.++ .-.+|..|-.+|. .+.++...+.....+.+ +|+ ..+.+|.. .-
T Consensus 216 I~sv~FHp~~plllvaG~d~-----~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr-------ky 281 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDG-----TLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR-------KY 281 (514)
T ss_pred ceEEEecCCCceEEEecCCC-----cEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccc-------eE
Confidence 33444433567888888843 3367778877775 44444333332222221 444 66666653 45
Q ss_pred EEEEeCCCCeEEeccCCcc---ccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEE
Q 017349 198 VECYDPESDTWTTAAKLRM---GLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVL 274 (373)
Q Consensus 198 ~~~yd~~t~~W~~~~~~~~---~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 274 (373)
++.||.++.+-.++.++-. .-...-.+..++.+.++.|.. ..|......|+.|-.--. +.......+...
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~------G~I~lLhakT~eli~s~K-ieG~v~~~~fsS 354 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN------GHIHLLHAKTKELITSFK-IEGVVSDFTFSS 354 (514)
T ss_pred EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC------ceEEeehhhhhhhhheee-eccEEeeEEEec
Confidence 8999999998887764422 111122345567777777765 467888888888843211 222222222223
Q ss_pred -CCeEEEEeeCCCcceEEEeCCCCceeeecCCCCCCcccccceEE-EEeCCEEEEEeCCceeeeeEEEE
Q 017349 275 -EGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAV-NGVEGKIYVVSSGLNVAIGRVYE 341 (373)
Q Consensus 275 -~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~GG~~~~~~~~~~~ 341 (373)
+.+|++.||.+ .+|+||+..+.-...-. . ....+..++ ...++.++.+|- ++.+..+|+
T Consensus 355 dsk~l~~~~~~G--eV~v~nl~~~~~~~rf~--D--~G~v~gts~~~S~ng~ylA~GS--~~GiVNIYd 415 (514)
T KOG2055|consen 355 DSKELLASGGTG--EVYVWNLRQNSCLHRFV--D--DGSVHGTSLCISLNGSYLATGS--DSGIVNIYD 415 (514)
T ss_pred CCcEEEEEcCCc--eEEEEecCCcceEEEEe--e--cCccceeeeeecCCCceEEecc--CcceEEEec
Confidence 45577777765 99999998873332210 0 111333333 356677555553 455666666
No 74
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.76 E-value=0.082 Score=48.05 Aligned_cols=176 Identities=13% Similarity=0.183 Sum_probs=95.6
Q ss_pred CceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCE-EEEEcCccCCCCCCcceeEEEeCCCCceeccCCCC-C
Q 017349 90 ARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGK-LFVLGGMRSDTETPMQSTIMYRATTNQWQLASPML-T 167 (373)
Q Consensus 90 ~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~ 167 (373)
...+++..|-.+|. .+.++.... ....++.+..+|. ..+++|. ..-++.||..+.+-.++.++. .
T Consensus 235 ~~lrifqvDGk~N~--~lqS~~l~~----fPi~~a~f~p~G~~~i~~s~r-------rky~ysyDle~ak~~k~~~~~g~ 301 (514)
T KOG2055|consen 235 GTLRIFQVDGKVNP--KLQSIHLEK----FPIQKAEFAPNGHSVIFTSGR-------RKYLYSYDLETAKVTKLKPPYGV 301 (514)
T ss_pred CcEEEEEecCccCh--hheeeeecc----CccceeeecCCCceEEEeccc-------ceEEEEeeccccccccccCCCCc
Confidence 34567777888876 444443222 1122233322454 7777665 336899999999988887653 1
Q ss_pred c-ceee-eeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEECC-EEEEEeCccCCCccCC
Q 017349 168 P-RSFF-ASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGS-KMYVTEGWTWPFMFSP 244 (373)
Q Consensus 168 ~-r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~-~lyv~gG~~~~~~~~~ 244 (373)
+ +... -.+...+.+.++-|.. .-++.....|+.|-.--.++..... .....++ +|++.||+.
T Consensus 302 e~~~~e~FeVShd~~fia~~G~~-------G~I~lLhakT~eli~s~KieG~v~~-~~fsSdsk~l~~~~~~G------- 366 (514)
T KOG2055|consen 302 EEKSMERFEVSHDSNFIAIAGNN-------GHIHLLHAKTKELITSFKIEGVVSD-FTFSSDSKELLASGGTG------- 366 (514)
T ss_pred ccchhheeEecCCCCeEEEcccC-------ceEEeehhhhhhhhheeeeccEEee-EEEecCCcEEEEEcCCc-------
Confidence 1 2221 1233344555665553 2366667777777433233322221 1222344 577777764
Q ss_pred ceEEEeCCCCceeecccCccCCc-ceEE--EEECCeEEEEeeCCCcceEEEeCCC
Q 017349 245 RGGVYDINKDTWNLMSDGMKEGW-TGIS--IVLEGKLFVISEHGDCPMKQYNPDD 296 (373)
Q Consensus 245 ~i~~yd~~~~~W~~~~~~~~~~~-~~~~--~~~~~~l~v~gg~~~~~~~~yd~~~ 296 (373)
.++++|+.++.-.. .....+. ++.. ...++. |+.-|...+-+-+||.++
T Consensus 367 eV~v~nl~~~~~~~--rf~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 367 EVYVWNLRQNSCLH--RFVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNS 418 (514)
T ss_pred eEEEEecCCcceEE--EEeecCccceeeeeecCCCc-eEEeccCcceEEEeccch
Confidence 79999999883221 1122222 2322 345777 554455577888898754
No 75
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.74 E-value=0.29 Score=43.03 Aligned_cols=142 Identities=12% Similarity=0.051 Sum_probs=71.4
Q ss_pred EEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeE-eC-CeEEEEcCCCCCCCCcCceEEEEeCCCCeE
Q 017349 131 KLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGN-VN-GKIMAVGGTGANINETMTAVECYDPESDTW 208 (373)
Q Consensus 131 ~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W 208 (373)
.+|+.++.+ ..+.+||+.+++-...-... .. ...++. -+ ..+|+.++.+ ..+.+||..+.+.
T Consensus 2 ~~~~s~~~d-------~~v~~~d~~t~~~~~~~~~~-~~-~~~l~~~~dg~~l~~~~~~~-------~~v~~~d~~~~~~ 65 (300)
T TIGR03866 2 KAYVSNEKD-------NTISVIDTATLEVTRTFPVG-QR-PRGITLSKDGKLLYVCASDS-------DTIQVIDLATGEV 65 (300)
T ss_pred cEEEEecCC-------CEEEEEECCCCceEEEEECC-CC-CCceEECCCCCEEEEEECCC-------CeEEEEECCCCcE
Confidence 466666542 27888998877533221111 11 112222 23 4567766543 4588999988765
Q ss_pred EeccCCccccccccEEEE-CC-EEEEEeCccCCCccCCceEEEeCCCCce-eecccCccCCcceEEEEECCeEEEEeeCC
Q 017349 209 TTAAKLRMGLARYDSAVM-GS-KMYVTEGWTWPFMFSPRGGVYDINKDTW-NLMSDGMKEGWTGISIVLEGKLFVISEHG 285 (373)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~-~~-~lyv~gG~~~~~~~~~~i~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~l~v~gg~~ 285 (373)
... ++........+.. ++ .+|+.++.+ ..+.+||+.+.+- ..++. ..........-++++++++...
T Consensus 66 ~~~--~~~~~~~~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~~~~ 135 (300)
T TIGR03866 66 IGT--LPSGPDPELFALHPNGKILYIANEDD------NLVTVIDIETRKVLAEIPV--GVEPEGMAVSPDGKIVVNTSET 135 (300)
T ss_pred EEe--ccCCCCccEEEECCCCCEEEEEcCCC------CeEEEEECCCCeEEeEeeC--CCCcceEEECCCCCEEEEEecC
Confidence 432 1111111122222 44 466655433 4789999987542 22211 1111122233467777776554
Q ss_pred CcceEEEeCCCCc
Q 017349 286 DCPMKQYNPDDDT 298 (373)
Q Consensus 286 ~~~~~~yd~~~~~ 298 (373)
...+..||..+.+
T Consensus 136 ~~~~~~~d~~~~~ 148 (300)
T TIGR03866 136 TNMAHFIDTKTYE 148 (300)
T ss_pred CCeEEEEeCCCCe
Confidence 4456678877653
No 76
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=96.64 E-value=0.35 Score=46.60 Aligned_cols=250 Identities=13% Similarity=0.093 Sum_probs=123.0
Q ss_pred CCCCCCCCCChHHHHHhhccCCccchhhhhhhcHhHHhhccCchhhH-hhhhc-cCC---CCEEEEEEecC--CCCceeE
Q 017349 22 NTQPLIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDPGFAL-CKKSL-SLS---LPYLFIFSFHK--PTARIQW 94 (373)
Q Consensus 22 ~~~~~~~~LP~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~~~~~~~-~~~~~-~~~---~~~l~~~gg~~--~~~~~~~ 94 (373)
.....+..||.++...||..|+.+.+..++.||+.|+.++.+..... ..... ... ..+-... ... ...-..+
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ks~ 181 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPL-KSGFKGRPWKSF 181 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCccccc-ccccccchhhhh
Confidence 36788999999999999999999999999999999999988765532 11111 110 0000000 000 0000011
Q ss_pred E-EeeCCCCCeeeCCCCCCCCCC--CCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCccee
Q 017349 95 Q-ALDPRSGRWFVLPPMPCPKAV--CPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSF 171 (373)
Q Consensus 95 ~-~~d~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~ 171 (373)
+ ......+.|............ ..+...+..+. ++++. . | .....+..||..+..-...+-....-.-
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~-~~~~~-~-~------s~~~tl~~~~~~~~~~i~~~l~GH~g~V 252 (537)
T KOG0274|consen 182 YRRRFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLH-DGFFK-S-G------SDDSTLHLWDLNNGYLILTRLVGHFGGV 252 (537)
T ss_pred hhhhhhccccccccccccceeecccCcchhhhheee-cCeEE-e-c------CCCceeEEeecccceEEEeeccCCCCCc
Confidence 1 112233445544332211100 01111222220 11111 1 1 1222446788777765444222112122
Q ss_pred eeeeEe-CCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEECCEEEEEe-CccCCCccCCceEEE
Q 017349 172 FASGNV-NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTE-GWTWPFMFSPRGGVY 249 (373)
Q Consensus 172 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~lyv~g-G~~~~~~~~~~i~~y 249 (373)
.++... ++.+++-|-.+ ..+.+.|..++.-..+-. . ......+......+.++ +.+ +.+.++
T Consensus 253 ~~l~~~~~~~~lvsgS~D-------~t~rvWd~~sg~C~~~l~--g-h~stv~~~~~~~~~~~sgs~D------~tVkVW 316 (537)
T KOG0274|consen 253 WGLAFPSGGDKLVSGSTD-------KTERVWDCSTGECTHSLQ--G-HTSSVRCLTIDPFLLVSGSRD------NTVKVW 316 (537)
T ss_pred eeEEEecCCCEEEEEecC-------CcEEeEecCCCcEEEEec--C-CCceEEEEEccCceEeeccCC------ceEEEE
Confidence 223333 35555555544 346677777776544321 1 11111122233344444 444 688999
Q ss_pred eCCCCceeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEeCCCCcee
Q 017349 250 DINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWR 300 (373)
Q Consensus 250 d~~~~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~W~ 300 (373)
|..++.-..+-.. .. ..--++.+++.+.+.|..+ ..+.+||+.+.+..
T Consensus 317 ~v~n~~~l~l~~~-h~-~~V~~v~~~~~~lvsgs~d-~~v~VW~~~~~~cl 364 (537)
T KOG0274|consen 317 DVTNGACLNLLRG-HT-GPVNCVQLDEPLLVSGSYD-GTVKVWDPRTGKCL 364 (537)
T ss_pred eccCcceEEEecc-cc-ccEEEEEecCCEEEEEecC-ceEEEEEhhhceee
Confidence 9987765443221 00 0111256777777777764 48999998855433
No 77
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=96.60 E-value=0.22 Score=42.11 Aligned_cols=162 Identities=11% Similarity=0.144 Sum_probs=76.2
Q ss_pred CceEEEEeccCCEEEEEcCccCCCCCCcceeEEEe---CCCCceec--cCCCCC-------cceeeeeeEeCCeEEEEcC
Q 017349 119 QAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYR---ATTNQWQL--ASPMLT-------PRSFFASGNVNGKIMAVGG 186 (373)
Q Consensus 119 ~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd---~~t~~W~~--~~~~~~-------~r~~~~~~~~~~~iyv~GG 186 (373)
|++++.++ ++++|..--...-....+...+.|+ ...+.|+. ++..+. .-.-|+.+.+++.-|.+|-
T Consensus 76 HCmSMGv~--~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~Gy 153 (367)
T PF12217_consen 76 HCMSMGVV--GNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGY 153 (367)
T ss_dssp E-B-EEEE--TTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEE
T ss_pred eeeeeeee--cceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEe
Confidence 55666666 8999976432111112344455555 45667864 444443 3456788888888888876
Q ss_pred CCCCCCCcCceEEE-EeCC-----CC-eEEecc-CCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCceee
Q 017349 187 TGANINETMTAVEC-YDPE-----SD-TWTTAA-KLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNL 258 (373)
Q Consensus 187 ~~~~~~~~~~~~~~-yd~~-----t~-~W~~~~-~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~ 258 (373)
.. ++....++-+ |-+. .. .=+.++ ......+-+..-.++|+||+..-...+...-..+.+-+..-..|..
T Consensus 154 Hn--GD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~s 231 (367)
T PF12217_consen 154 HN--GDVSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSS 231 (367)
T ss_dssp EE---SSSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EE
T ss_pred cc--CCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhh
Confidence 54 3333333322 2111 11 112222 1111122233445699999986433233344566677777778998
Q ss_pred cccCccCCcceEE-EEECCeEEEEeeC
Q 017349 259 MSDGMKEGWTGIS-IVLEGKLFVISEH 284 (373)
Q Consensus 259 ~~~~~~~~~~~~~-~~~~~~l~v~gg~ 284 (373)
+.-|........- +..++.||++|..
T Consensus 232 lrfp~nvHhtnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 232 LRFPNNVHHTNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp EE-TT---SS---EEEETTEEEEEEE-
T ss_pred ccccccccccCCCceeeCCEEEEEecc
Confidence 8754322222222 7789999999864
No 78
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=96.57 E-value=0.66 Score=43.40 Aligned_cols=146 Identities=12% Similarity=-0.044 Sum_probs=78.2
Q ss_pred ceeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEE
Q 017349 147 QSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVM 226 (373)
Q Consensus 147 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 226 (373)
..++++|..+++-..+..............-+.+|++....+ ....++.+|..++..+.+......... ....-
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~-----~~~~i~~~d~~~~~~~~l~~~~~~~~~-~~~s~ 287 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKD-----GNPDIYVMDLDGKQLTRLTNGPGIDTE-PSWSP 287 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCC-----CCccEEEEECCCCCEEECCCCCCCCCC-EEECC
Confidence 579999999887665544332222111111234565543322 235689999998887776543221111 11122
Q ss_pred CCE-EEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEECCeEEEEeeCC--CcceEEEeCCCCceeeec
Q 017349 227 GSK-MYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHG--DCPMKQYNPDDDTWRYVG 303 (373)
Q Consensus 227 ~~~-lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~--~~~~~~yd~~~~~W~~~~ 303 (373)
+|+ |++..... ....++.+|..++.++.+... ..........-+++.+++.... ...++.+|+.++.++.+.
T Consensus 288 dg~~l~~~s~~~----g~~~iy~~d~~~~~~~~l~~~-~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 288 DGKSIAFTSDRG----GSPQIYMMDADGGEVRRLTFR-GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred CCCEEEEEECCC----CCceEEEEECCCCCEEEeecC-CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc
Confidence 454 54443322 124789999998888766431 1111112223356655554432 347899999887776664
No 79
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.55 E-value=0.28 Score=41.97 Aligned_cols=184 Identities=12% Similarity=0.128 Sum_probs=99.0
Q ss_pred EEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeee
Q 017349 94 WQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFA 173 (373)
Q Consensus 94 ~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~ 173 (373)
+.++|+++-..+..+ +|.. .....+-.+++...+.++..|-... .=+.||.++.-+..+...-.-.+-.
T Consensus 126 I~R~dpkt~evt~f~-lp~~--~a~~nlet~vfD~~G~lWFt~q~G~--------yGrLdPa~~~i~vfpaPqG~gpyGi 194 (353)
T COG4257 126 IGRLDPKTLEVTRFP-LPLE--HADANLETAVFDPWGNLWFTGQIGA--------YGRLDPARNVISVFPAPQGGGPYGI 194 (353)
T ss_pred eEEecCcccceEEee-cccc--cCCCcccceeeCCCccEEEeecccc--------ceecCcccCceeeeccCCCCCCcce
Confidence 445666655554442 2211 1224555666666778887764211 1167777776554433211112222
Q ss_pred eeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccc---cccEEEECCEEEEEeCccCCCccCCceEEEe
Q 017349 174 SGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLA---RYDSAVMGSKMYVTEGWTWPFMFSPRGGVYD 250 (373)
Q Consensus 174 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~---~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd 250 (373)
++.-++.+|+..=.. +-+-..|+.+..=+.++. |.+.. .....---|++.+.-- ....+.+||
T Consensus 195 ~atpdGsvwyaslag-------naiaridp~~~~aev~p~-P~~~~~gsRriwsdpig~~wittw------g~g~l~rfd 260 (353)
T COG4257 195 CATPDGSVWYASLAG-------NAIARIDPFAGHAEVVPQ-PNALKAGSRRIWSDPIGRAWITTW------GTGSLHRFD 260 (353)
T ss_pred EECCCCcEEEEeccc-------cceEEcccccCCcceecC-CCcccccccccccCccCcEEEecc------CCceeeEeC
Confidence 334577777763221 236667777774444432 22211 1111122456665521 125789999
Q ss_pred CCCCceeecccCccCCcceEE-EEECCeEEEEeeCCCcceEEEeCCCCceeeec
Q 017349 251 INKDTWNLMSDGMKEGWTGIS-IVLEGKLFVISEHGDCPMKQYNPDDDTWRYVG 303 (373)
Q Consensus 251 ~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~ 303 (373)
+++..|.+.+-|-...+-... +--.|++++- ..+.+.+.+||+++.+++++.
T Consensus 261 Ps~~sW~eypLPgs~arpys~rVD~~grVW~s-ea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 261 PSVTSWIEYPLPGSKARPYSMRVDRHGRVWLS-EADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred cccccceeeeCCCCCCCcceeeeccCCcEEee-ccccCceeecCcccceEEEec
Confidence 999999988753333333332 3344566653 233679999999999999885
No 80
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.50 E-value=0.64 Score=42.37 Aligned_cols=252 Identities=15% Similarity=0.163 Sum_probs=121.7
Q ss_pred CCCCEEEEEEecC-CCCceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEe
Q 017349 75 LSLPYLFIFSFHK-PTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYR 153 (373)
Q Consensus 75 ~~~~~l~~~gg~~-~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd 153 (373)
..+..||+..... .......+..+..+.+...+...+... ..-...++...++.||+..- ....+.+|+
T Consensus 46 ~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g---~~p~~i~~~~~g~~l~vany-------~~g~v~v~~ 115 (345)
T PF10282_consen 46 PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG---SSPCHIAVDPDGRFLYVANY-------GGGSVSVFP 115 (345)
T ss_dssp TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS---SCEEEEEECTTSSEEEEEET-------TTTEEEEEE
T ss_pred eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC---CCcEEEEEecCCCEEEEEEc-------cCCeEEEEE
Confidence 3578888886543 333334445555556776665544211 01122333333667777631 123677777
Q ss_pred CCCC-ceeccC---------C---CCCcceeeeeeEe--CCeEEEEcCCCCCCCCcCceEEEEeCCCCe--EEeccCC--
Q 017349 154 ATTN-QWQLAS---------P---MLTPRSFFASGNV--NGKIMAVGGTGANINETMTAVECYDPESDT--WTTAAKL-- 214 (373)
Q Consensus 154 ~~t~-~W~~~~---------~---~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~-- 214 (373)
...+ +-.... + ....-..|.+... +..+|+.. . -.+.+.+|+...+. ......+
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d-l------G~D~v~~~~~~~~~~~l~~~~~~~~ 188 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD-L------GADRVYVYDIDDDTGKLTPVDSIKV 188 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE-T------TTTEEEEEEE-TTS-TEEEEEEEEC
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe-c------CCCEEEEEEEeCCCceEEEeecccc
Confidence 7664 221111 0 0112233444444 34566652 1 13468888877665 5443322
Q ss_pred ccccccccEEEE-C-CEEEEEeCccCCCccCCceEEEeCC--CCceeeccc--CccCCc----ceEEE-EE-CC-eEEEE
Q 017349 215 RMGLARYDSAVM-G-SKMYVTEGWTWPFMFSPRGGVYDIN--KDTWNLMSD--GMKEGW----TGISI-VL-EG-KLFVI 281 (373)
Q Consensus 215 ~~~~~~~~~~~~-~-~~lyv~gG~~~~~~~~~~i~~yd~~--~~~W~~~~~--~~~~~~----~~~~~-~~-~~-~l~v~ 281 (373)
+..-.-..+++. + ..+|++.... +.+.+|+.. ++.++.+.. ..+... ..+.+ .. ++ .||+.
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e~s------~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs 262 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNELS------NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS 262 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEETTT------TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE
T ss_pred ccCCCCcEEEEcCCcCEEEEecCCC------CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE
Confidence 222221223333 3 4689987655 567666665 666665433 122111 22223 33 34 46665
Q ss_pred eeCCCcceEEEeC--CCCceeeecCCCCCCcccccceEEEEeCCEEEEEeCCceeeeeEEEEeecCCcccceEEec
Q 017349 282 SEHGDCPMKQYNP--DDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEEQNGGISAEWKVMT 355 (373)
Q Consensus 282 gg~~~~~~~~yd~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~W~~~~ 355 (373)
.. ..+.|.+|+. .+++.+.+...+.. ...-+.+.+...++.||+.+...+. ..+++ .|.++..++.+.
T Consensus 263 nr-~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~Va~~~s~~--v~vf~--~d~~tG~l~~~~ 332 (345)
T PF10282_consen 263 NR-GSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLYVANQDSNT--VSVFD--IDPDTGKLTPVG 332 (345)
T ss_dssp EC-TTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEEEEETTTTE--EEEEE--EETTTTEEEEEE
T ss_pred ec-cCCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEEEEecCCCe--EEEEE--EeCCCCcEEEec
Confidence 43 3668888876 45667666543332 1111223333355667766553222 34444 667777777543
No 81
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.46 E-value=0.56 Score=41.19 Aligned_cols=177 Identities=12% Similarity=-0.030 Sum_probs=85.6
Q ss_pred eeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceec-cCCCCCcce
Q 017349 92 IQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQL-ASPMLTPRS 170 (373)
Q Consensus 92 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~r~ 170 (373)
..+.++|+.+++........ . ...+.+....++.+|+.++. .+.+.+||..+++... ++....+
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~--~----~~~~l~~~~dg~~l~~~~~~-------~~~v~~~d~~~~~~~~~~~~~~~~-- 75 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVG--Q----RPRGITLSKDGKLLYVCASD-------SDTIQVIDLATGEVIGTLPSGPDP-- 75 (300)
T ss_pred CEEEEEECCCCceEEEEECC--C----CCCceEECCCCCEEEEEECC-------CCeEEEEECCCCcEEEeccCCCCc--
Confidence 35778898877643322211 1 11223332223457777653 2368899998876543 2221111
Q ss_pred eeeeeE-e-CCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEE-ECCEEEEEeCccCCCccCCceE
Q 017349 171 FFASGN-V-NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV-MGSKMYVTEGWTWPFMFSPRGG 247 (373)
Q Consensus 171 ~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~~~lyv~gG~~~~~~~~~~i~ 247 (373)
..++. - ++.+|+.++.+ ..+.+||+.+.+- +..++.......++. -++.+++++.... ..+.
T Consensus 76 -~~~~~~~~g~~l~~~~~~~-------~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~-----~~~~ 140 (300)
T TIGR03866 76 -ELFALHPNGKILYIANEDD-------NLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSETT-----NMAH 140 (300)
T ss_pred -cEEEECCCCCEEEEEcCCC-------CeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEecCC-----CeEE
Confidence 12222 2 34566655432 3588999987642 211221111122222 2666666654321 2456
Q ss_pred EEeCCCCceeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEeCCCCce
Q 017349 248 VYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTW 299 (373)
Q Consensus 248 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~W 299 (373)
.||..+.+-..... ...........-+++.+++++.....+..||.++.+.
T Consensus 141 ~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 141 FIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred EEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 67877654322111 1111111223335665555544456789999987643
No 82
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=96.40 E-value=0.064 Score=41.10 Aligned_cols=79 Identities=10% Similarity=0.069 Sum_probs=54.9
Q ss_pred EEECCEEEEEeCccCCCccCCceEEEeCCCCceeecccC--ccCC-cceEEEEECCeEEEEeeCC-----CcceEEE-eC
Q 017349 224 AVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDG--MKEG-WTGISIVLEGKLFVISEHG-----DCPMKQY-NP 294 (373)
Q Consensus 224 ~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~--~~~~-~~~~~~~~~~~l~v~gg~~-----~~~~~~y-d~ 294 (373)
+.+||.+|..+.. .......|.+||..+++|+.+..| .... .....+.++|+|-++.-.. .-++|+. |.
T Consensus 2 icinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 2 ICINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred EEECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence 4679999998765 223447899999999999988764 1122 2222378899999986443 2467776 56
Q ss_pred CCCceeeecC
Q 017349 295 DDDTWRYVGG 304 (373)
Q Consensus 295 ~~~~W~~~~~ 304 (373)
++++|.....
T Consensus 80 ~k~~Wsk~~~ 89 (129)
T PF08268_consen 80 EKQEWSKKHI 89 (129)
T ss_pred ccceEEEEEE
Confidence 6789997643
No 83
>PRK13684 Ycf48-like protein; Provisional
Probab=96.35 E-value=0.77 Score=41.63 Aligned_cols=195 Identities=9% Similarity=0.133 Sum_probs=97.2
Q ss_pred CCCeeeCCCC-CCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEeCC
Q 017349 101 SGRWFVLPPM-PCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNG 179 (373)
Q Consensus 101 ~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~ 179 (373)
-.+|..+... ..+. +.+....+. ++.+++.|.. ..+++-+-.-++|+.+.... .-..+.+....+
T Consensus 118 G~tW~~~~~~~~~~~----~~~~i~~~~-~~~~~~~g~~--------G~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~ 183 (334)
T PRK13684 118 GKNWTRIPLSEKLPG----SPYLITALG-PGTAEMATNV--------GAIYRTTDGGKNWEALVEDA-AGVVRNLRRSPD 183 (334)
T ss_pred CCCCeEccCCcCCCC----CceEEEEEC-CCcceeeecc--------ceEEEECCCCCCceeCcCCC-cceEEEEEECCC
Confidence 3578887532 1111 223333332 3455655432 24666666677999876533 223334444444
Q ss_pred eEEEEcCCCCCCCCcCceEEE-EeCCCCeEEeccCCccccccccEEE-ECCEEEEEeCccCCCccCCceEEEe-C-CCCc
Q 017349 180 KIMAVGGTGANINETMTAVEC-YDPESDTWTTAAKLRMGLARYDSAV-MGSKMYVTEGWTWPFMFSPRGGVYD-I-NKDT 255 (373)
Q Consensus 180 ~iyv~GG~~~~~~~~~~~~~~-yd~~t~~W~~~~~~~~~~~~~~~~~-~~~~lyv~gG~~~~~~~~~~i~~yd-~-~~~~ 255 (373)
..+++.|.. + .++. .|....+|+.+.. +....-..++. -+++++++|... ...+. . .-.+
T Consensus 184 g~~v~~g~~--G-----~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~G--------~~~~~s~d~G~s 247 (334)
T PRK13684 184 GKYVAVSSR--G-----NFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARGG--------QIRFNDPDDLES 247 (334)
T ss_pred CeEEEEeCC--c-----eEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecCC--------EEEEccCCCCCc
Confidence 444443332 1 1222 2344567988754 22223233333 367888887532 23342 2 2347
Q ss_pred eeecccCccCC---cceEEEEECCeEEEEeeCCCcceEEEeCCCCceeeecC-CCCCCcccccceEEE-EeCCEEEEEeC
Q 017349 256 WNLMSDGMKEG---WTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGG-DKFPCEVMHRPFAVN-GVEGKIYVVSS 330 (373)
Q Consensus 256 W~~~~~~~~~~---~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~-~~~~~l~i~GG 330 (373)
|+.+..+.... .......-++.++++|..+ .+..-.-...+|+.+.. ...+ .....++ ..++++|++|.
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G--~v~~S~d~G~tW~~~~~~~~~~----~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG--TLLVSKDGGKTWEKDPVGEEVP----SNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEcCCC--eEEEeCCCCCCCeECCcCCCCC----cceEEEEEeCCCceEEECC
Confidence 99765432211 1111122367888887643 44443444568999753 1222 2334444 45778888886
Q ss_pred C
Q 017349 331 G 331 (373)
Q Consensus 331 ~ 331 (373)
.
T Consensus 322 ~ 322 (334)
T PRK13684 322 R 322 (334)
T ss_pred C
Confidence 3
No 84
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.33 E-value=0.33 Score=43.73 Aligned_cols=121 Identities=11% Similarity=0.118 Sum_probs=73.6
Q ss_pred ceEEEEeCCCC-----eEEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCc-eeecccCccCCcce
Q 017349 196 TAVECYDPESD-----TWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT-WNLMSDGMKEGWTG 269 (373)
Q Consensus 196 ~~~~~yd~~t~-----~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~-W~~~~~~~~~~~~~ 269 (373)
-.+.+|+.... +.+.+......-.-.+.+.++++|.+..| +.+.+|+..... +..... ...+...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~-~~~~~~i 132 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAF-YDSPFYI 132 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEE-E-BSSSE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhhe-ecceEEE
Confidence 56888998885 56666544444344556677999666655 468899998888 766654 2222233
Q ss_pred EE-EEECCeEEEEeeCCCcceEEEeCCCCceeeecCCCCCCcccccceEEEEe-CCEEEEEeC
Q 017349 270 IS-IVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGV-EGKIYVVSS 330 (373)
Q Consensus 270 ~~-~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~GG 330 (373)
.. .+.++.|++-.-..+-.+..|+.+.++...++.-..+ +...++..+ ++. .++++
T Consensus 133 ~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~----~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 133 TSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQP----RWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp EEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-----BEEEEEEEE-SSS-EEEEE
T ss_pred EEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCC----ccEEEEEEecCCc-EEEEE
Confidence 33 5677866655444455677888877778888764444 444555445 555 44444
No 85
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.33 E-value=0.7 Score=40.96 Aligned_cols=237 Identities=11% Similarity=0.127 Sum_probs=103.5
Q ss_pred CCCEEEEEEecCCCCceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCC
Q 017349 76 SLPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRAT 155 (373)
Q Consensus 76 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~ 155 (373)
.++.-|++|.. ..++.=+-.-.+|.....-. .. ....++...... ++..|++|.. ..++.-.-.
T Consensus 26 d~~~G~~VG~~-----g~il~T~DGG~tW~~~~~~~-~~-~~~~~l~~I~f~-~~~g~ivG~~--------g~ll~T~Dg 89 (302)
T PF14870_consen 26 DPNHGWAVGAY-----GTILKTTDGGKTWQPVSLDL-DN-PFDYHLNSISFD-GNEGWIVGEP--------GLLLHTTDG 89 (302)
T ss_dssp SSS-EEEEETT-----TEEEEESSTTSS-EE------S------EEEEEEEE-TTEEEEEEET--------TEEEEESST
T ss_pred cCCEEEEEecC-----CEEEEECCCCccccccccCC-Cc-cceeeEEEEEec-CCceEEEcCC--------ceEEEecCC
Confidence 45566666532 12333334456798875322 11 001223322222 7888888642 135555556
Q ss_pred CCceeccCC-CCCcceeeeeeEe-CCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEECCEEEEE
Q 017349 156 TNQWQLASP-MLTPRSFFASGNV-NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVT 233 (373)
Q Consensus 156 t~~W~~~~~-~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~lyv~ 233 (373)
-.+|++++- .+.+...+.+... ++.+++++... .++.=.=.-.+|+.+..-...........-+|+++.+
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G--------~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vav 161 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDGSAELAGDRG--------AIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAV 161 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETTEEEEEETT----------EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEE
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCC--------cEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEE
Confidence 669999862 2334444444444 55666665432 2333333455898875433321111122236776666
Q ss_pred eCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEe--CCCCceeeecCCCCCCcc
Q 017349 234 EGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYN--PDDDTWRYVGGDKFPCEV 311 (373)
Q Consensus 234 gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd--~~~~~W~~~~~~~~~~~~ 311 (373)
+... +-....|+....|+....+...+...+...-++.|++++. ...+..=+ -...+|.+-. .|..
T Consensus 162 s~~G------~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~--Gg~~~~s~~~~~~~~w~~~~-~~~~--- 229 (302)
T PF14870_consen 162 SSRG------NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLAR--GGQIQFSDDPDDGETWSEPI-IPIK--- 229 (302)
T ss_dssp ETTS------SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEET--TTEEEEEE-TTEEEEE---B--TTS---
T ss_pred ECcc------cEEEEecCCCccceEEccCccceehhceecCCCCEEEEeC--CcEEEEccCCCCcccccccc-CCcc---
Confidence 6543 3445678888899988764444444444555788988863 22444444 3445777732 2333
Q ss_pred cccceE---EE-EeCCEEEEEeCCceeeeeEEEEeecCCcccceEEecC
Q 017349 312 MHRPFA---VN-GVEGKIYVVSSGLNVAIGRVYEEQNGGISAEWKVMTA 356 (373)
Q Consensus 312 ~~~~~~---~~-~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~W~~~~~ 356 (373)
...++ ++ ..++++++.||.. .++. -..+...|++-+.
T Consensus 230 -~~~~~~ld~a~~~~~~~wa~gg~G-----~l~~--S~DgGktW~~~~~ 270 (302)
T PF14870_consen 230 -TNGYGILDLAYRPPNEIWAVGGSG-----TLLV--STDGGKTWQKDRV 270 (302)
T ss_dssp -S--S-EEEEEESSSS-EEEEESTT------EEE--ESSTTSS-EE-GG
T ss_pred -cCceeeEEEEecCCCCEEEEeCCc-----cEEE--eCCCCccceECcc
Confidence 23332 22 2358899999953 2222 3456678887765
No 86
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.24 E-value=0.64 Score=42.36 Aligned_cols=172 Identities=17% Similarity=0.198 Sum_probs=85.5
Q ss_pred eeEEEeCCCCceeccCCCCCcceeeeeeE--eCCeEEEEcCCCCCCCCcCceEEEEe--CCCCeEEeccCCccccccccE
Q 017349 148 STIMYRATTNQWQLASPMLTPRSFFASGN--VNGKIMAVGGTGANINETMTAVECYD--PESDTWTTAAKLRMGLARYDS 223 (373)
Q Consensus 148 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd--~~t~~W~~~~~~~~~~~~~~~ 223 (373)
.++.||..++++..+......-...-++. -++.||+..... .....+..|+ ..+++.+.+...+.....+..
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~----~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~ 91 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS----GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH 91 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS----STTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred EEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc----cCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence 45666778888887765322211112222 357788885431 1223455554 444688877766643333232
Q ss_pred EEE--CCE-EEEEeCccCCCccCCceEEEeCCCC-ceeecc-------c-Cc---cCCcceEEEEE--CCe-EEEEeeCC
Q 017349 224 AVM--GSK-MYVTEGWTWPFMFSPRGGVYDINKD-TWNLMS-------D-GM---KEGWTGISIVL--EGK-LFVISEHG 285 (373)
Q Consensus 224 ~~~--~~~-lyv~gG~~~~~~~~~~i~~yd~~~~-~W~~~~-------~-~~---~~~~~~~~~~~--~~~-l~v~gg~~ 285 (373)
+.+ +++ ||+.. +. ...+.+|++..+ .-.... . +. ....+.+.+.. +++ +|+.. .+
T Consensus 92 i~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d-lG 164 (345)
T PF10282_consen 92 IAVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD-LG 164 (345)
T ss_dssp EEECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE-TT
T ss_pred EEEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe-cC
Confidence 333 444 55543 22 146788888763 222211 0 11 12233344433 344 55543 34
Q ss_pred CcceEEEeCCCCc--eeeecCCCCCCcccccceEEEE-eCCEEEEEeCC
Q 017349 286 DCPMKQYNPDDDT--WRYVGGDKFPCEVMHRPFAVNG-VEGKIYVVSSG 331 (373)
Q Consensus 286 ~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~GG~ 331 (373)
.+.+++|+.+.+. .+.......+... --+|.++. -+..+|++...
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~-GPRh~~f~pdg~~~Yv~~e~ 212 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGS-GPRHLAFSPDGKYAYVVNEL 212 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTS-SEEEEEE-TTSSEEEEEETT
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCC-CCcEEEEcCCcCEEEEecCC
Confidence 6689998887665 6554433333211 22233333 34579998864
No 87
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.92 E-value=0.39 Score=43.26 Aligned_cols=150 Identities=16% Similarity=0.222 Sum_probs=86.5
Q ss_pred CEEEEEcCccCCC--CCCc-ceeEEEeCCCC-----ceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEE
Q 017349 130 GKLFVLGGMRSDT--ETPM-QSTIMYRATTN-----QWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECY 201 (373)
Q Consensus 130 ~~i~v~GG~~~~~--~~~~-~~~~~yd~~t~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~y 201 (373)
...+++|.....+ .... ..+++|+.... +.+.+.....+-.-.+++.+++++.+..|. .+.+|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~---------~l~v~ 112 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGN---------KLYVY 112 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETT---------EEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecC---------EEEEE
Confidence 4556665442111 1122 67999998885 555555555555566777889997777664 48899
Q ss_pred eCCCCe-EEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEE-CCeEE
Q 017349 202 DPESDT-WTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVL-EGKLF 279 (373)
Q Consensus 202 d~~t~~-W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~l~ 279 (373)
+...++ +...+.+..+....+..+.++.|++.--.. .-.++.|+.+..+-..+..........++..+ ++. .
T Consensus 113 ~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~-----sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~ 186 (321)
T PF03178_consen 113 DLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMK-----SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-T 186 (321)
T ss_dssp EEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSS-----SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-E
T ss_pred EccCcccchhhheecceEEEEEEeccccEEEEEEccc-----CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-E
Confidence 988888 888777666655566677788666543322 12455678866667777653333333333444 666 4
Q ss_pred EEeeCCCcc--eEEEeC
Q 017349 280 VISEHGDCP--MKQYNP 294 (373)
Q Consensus 280 v~gg~~~~~--~~~yd~ 294 (373)
++++..... +..|++
T Consensus 187 ~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 187 IIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEETTSEEEEEEE-S
T ss_pred EEEEcCCCeEEEEEECC
Confidence 444443343 445554
No 88
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.81 E-value=1.8 Score=41.09 Aligned_cols=148 Identities=10% Similarity=0.002 Sum_probs=79.8
Q ss_pred cceeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEE
Q 017349 146 MQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV 225 (373)
Q Consensus 146 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~ 225 (373)
...++++|..+++-+.+...+..........-+.+|++....+ ....++.+|..+++.+.+...... .......
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~-----g~~~Iy~~dl~tg~~~~lt~~~~~-~~~p~wS 314 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKD-----GQPEIYVVDIATKALTRITRHRAI-DTEPSWH 314 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCC-----CCeEEEEEECCCCCeEECccCCCC-ccceEEC
Confidence 3479999999887666654432111111111244565543322 135799999999988777542211 1111122
Q ss_pred ECCE-EEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEECC-eEEEEeeCC-CcceEEEeCCCCceeee
Q 017349 226 MGSK-MYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEG-KLFVISEHG-DCPMKQYNPDDDTWRYV 302 (373)
Q Consensus 226 ~~~~-lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l~v~gg~~-~~~~~~yd~~~~~W~~~ 302 (373)
-+|+ |++..... ....++.+|..+++++.+.... .........-+| .|+..+... ...++.+|+.+++.+.+
T Consensus 315 pDG~~I~f~s~~~----g~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~l 389 (448)
T PRK04792 315 PDGKSLIFTSERG----GKPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVL 389 (448)
T ss_pred CCCCEEEEEECCC----CCceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEc
Confidence 2554 54443222 1257999999999887764211 111112222244 454443322 34788899998887776
Q ss_pred cC
Q 017349 303 GG 304 (373)
Q Consensus 303 ~~ 304 (373)
..
T Consensus 390 t~ 391 (448)
T PRK04792 390 TS 391 (448)
T ss_pred cC
Confidence 53
No 89
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.79 E-value=2.7 Score=44.43 Aligned_cols=158 Identities=10% Similarity=0.078 Sum_probs=87.7
Q ss_pred eEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCC----------C---CcceeeeeeEe--CCeEEEEc
Q 017349 121 FACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPM----------L---TPRSFFASGNV--NGKIMAVG 185 (373)
Q Consensus 121 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~----------~---~~r~~~~~~~~--~~~iyv~G 185 (373)
++.++...++.+||.... .+.+++||+.++.......- . ......+++.. ++.||+..
T Consensus 686 ~gVa~dp~~g~LyVad~~-------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD 758 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAG-------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD 758 (1057)
T ss_pred eEEEEecCCCeEEEEECC-------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEE
Confidence 445544336889987532 34689999877755432100 0 00111223332 34688876
Q ss_pred CCCCCCCCcCceEEEEeCCCCeEEecc--C--Ccc--------------c-cccccE-EE-ECCEEEEEeCccCCCccCC
Q 017349 186 GTGANINETMTAVECYDPESDTWTTAA--K--LRM--------------G-LARYDS-AV-MGSKMYVTEGWTWPFMFSP 244 (373)
Q Consensus 186 G~~~~~~~~~~~~~~yd~~t~~W~~~~--~--~~~--------------~-~~~~~~-~~-~~~~lyv~gG~~~~~~~~~ 244 (373)
..+ +.+.+||+.++....+. . .+. . ...+.. ++ -+|.|||....+ +
T Consensus 759 s~n-------~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N------~ 825 (1057)
T PLN02919 759 SES-------SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN------H 825 (1057)
T ss_pred CCC-------CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC------C
Confidence 543 57899998876533211 0 000 0 011122 22 367899887554 6
Q ss_pred ceEEEeCCCCceeecccCc----------cC---CcceEEEEECCeEEEEeeCCCcceEEEeCCCCce
Q 017349 245 RGGVYDINKDTWNLMSDGM----------KE---GWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTW 299 (373)
Q Consensus 245 ~i~~yd~~~~~W~~~~~~~----------~~---~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~W 299 (373)
.|.+||+.++....+...- .. .-.+.++.-+|++||.... ++.|.++|..+++-
T Consensus 826 rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~-Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 826 KIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN-NSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC-CCEEEEEECCCCcc
Confidence 8999999888766443200 00 0112223347889988654 67899999987753
No 90
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.65 E-value=0.0056 Score=52.86 Aligned_cols=43 Identities=23% Similarity=0.170 Sum_probs=37.9
Q ss_pred CCCCChHHHHHhhccCC-----ccchhhhhhhcHhHHhhccCchhhHh
Q 017349 27 IPGLPDEIGELCLLHVP-----YPYQALVRSVSYSWNKAITDPGFALC 69 (373)
Q Consensus 27 ~~~LP~dl~~~il~rlp-----~~~l~~~~~v~k~W~~l~~~~~~~~~ 69 (373)
|..|||||+.+||.++= ..++.++.+|||.|.....+|++++.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 56799999999998774 47899999999999999999998753
No 91
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.50 E-value=1.1 Score=38.59 Aligned_cols=108 Identities=15% Similarity=0.123 Sum_probs=70.4
Q ss_pred eeeE-eCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeC
Q 017349 173 ASGN-VNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDI 251 (373)
Q Consensus 173 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~ 251 (373)
++.. .++.+|.--|.. -.+.+..||+.|++-....++|...+.-+.+..+++||...=.. ...++||.
T Consensus 49 GL~~~~~g~LyESTG~y-----G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~------~~~f~yd~ 117 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLY-----GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKE------GTGFVYDP 117 (264)
T ss_dssp EEEEEETTEEEEEECST-----TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSS------SEEEEEET
T ss_pred cEEecCCCEEEEeCCCC-----CcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecC------CeEEEEcc
Confidence 3444 578888877664 24679999999998777778888778888899999999986443 57899999
Q ss_pred CCCceeeccc-CccCCcceEEEEECCeEEEEeeCCCcceEEEeCCC
Q 017349 252 NKDTWNLMSD-GMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDD 296 (373)
Q Consensus 252 ~~~~W~~~~~-~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~ 296 (373)
.+ .+.+.. +.+.-..+. +.-+..|++-.|. ..++..||++
T Consensus 118 ~t--l~~~~~~~y~~EGWGL-t~dg~~Li~SDGS--~~L~~~dP~~ 158 (264)
T PF05096_consen 118 NT--LKKIGTFPYPGEGWGL-TSDGKRLIMSDGS--SRLYFLDPET 158 (264)
T ss_dssp TT--TEEEEEEE-SSS--EE-EECSSCEEEE-SS--SEEEEE-TTT
T ss_pred cc--ceEEEEEecCCcceEE-EcCCCEEEEECCc--cceEEECCcc
Confidence 75 344333 122111222 3445667777774 4899999875
No 92
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=95.41 E-value=1.9 Score=38.83 Aligned_cols=186 Identities=11% Similarity=0.058 Sum_probs=83.7
Q ss_pred eeEEEeeCCC-CCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCC-CCceeccCCCCCcc
Q 017349 92 IQWQALDPRS-GRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRAT-TNQWQLASPMLTPR 169 (373)
Q Consensus 92 ~~~~~~d~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~r 169 (373)
..+..||..+ .++..+..++... .....+....++.||+.+.. ...+..|+.. +++++.+...+.+.
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~~----~~~~l~~spd~~~lyv~~~~-------~~~i~~~~~~~~g~l~~~~~~~~~~ 80 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVPG----QVQPMVISPDKRHLYVGVRP-------EFRVLSYRIADDGALTFAAESPLPG 80 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecCC----CCccEEECCCCCEEEEEECC-------CCcEEEEEECCCCceEEeeeecCCC
Confidence 4466777653 4555554444221 11222222224566775432 2356667665 45665544333222
Q ss_pred eeeeeeEe-C-CeEEEEcCCCCCCCCcCceEEEEeCCCCe--EEeccCCccccccccEEEE-CC-EEEEEeCccCCCccC
Q 017349 170 SFFASGNV-N-GKIMAVGGTGANINETMTAVECYDPESDT--WTTAAKLRMGLARYDSAVM-GS-KMYVTEGWTWPFMFS 243 (373)
Q Consensus 170 ~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~-~~-~lyv~gG~~~~~~~~ 243 (373)
....++.. + ..+|+..-. ...+.+||..++. .+.+..++.....|.+++. ++ .+|+..-..
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~-------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~------ 147 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYN-------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKE------ 147 (330)
T ss_pred CceEEEECCCCCEEEEEEcC-------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCC------
Confidence 22223332 3 456665321 2457778776432 1122222221222333333 44 466554332
Q ss_pred CceEEEeCCCC-ceeec-----ccCccCCcceEEEEEC-CeEEEEeeCCCcceEEEeCC--CCceeee
Q 017349 244 PRGGVYDINKD-TWNLM-----SDGMKEGWTGISIVLE-GKLFVISEHGDCPMKQYNPD--DDTWRYV 302 (373)
Q Consensus 244 ~~i~~yd~~~~-~W~~~-----~~~~~~~~~~~~~~~~-~~l~v~gg~~~~~~~~yd~~--~~~W~~~ 302 (373)
+.+.+||+.+. ..... ..+...+-.+....-+ ..+|+... ..+.+.+||.+ +++.+.+
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~-~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE-LNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec-CCCEEEEEEEeCCCCCEEEE
Confidence 57999999763 23211 1111111112222223 35677644 25677777775 4455443
No 93
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.23 E-value=1.7 Score=37.11 Aligned_cols=144 Identities=14% Similarity=0.142 Sum_probs=67.0
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEe-CCeEEEEcCCCCCCCCcCceEEEEeCCCCe
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV-NGKIMAVGGTGANINETMTAVECYDPESDT 207 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~ 207 (373)
++.++++|+. ...+.+||..+++-...-.... .....+... +++.+++++.+ ..+.+||..+++
T Consensus 20 ~~~~l~~~~~-------~g~i~i~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~-------~~i~i~~~~~~~ 84 (289)
T cd00200 20 DGKLLATGSG-------DGTIKVWDLETGELLRTLKGHT-GPVRDVAASADGTYLASGSSD-------KTIRLWDLETGE 84 (289)
T ss_pred CCCEEEEeec-------CcEEEEEEeeCCCcEEEEecCC-cceeEEEECCCCCEEEEEcCC-------CeEEEEEcCccc
Confidence 5566666654 1267788877664211111111 111122222 34455565543 358888888753
Q ss_pred EEeccCCccccccc-cEEEE-CCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEEC-CeEEEEeeC
Q 017349 208 WTTAAKLRMGLARY-DSAVM-GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLE-GKLFVISEH 284 (373)
Q Consensus 208 W~~~~~~~~~~~~~-~~~~~-~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~l~v~gg~ 284 (373)
-... +....... ..... ++.+++.++.+ ..+..||+.+.+-...-........ ...... +++++.+.
T Consensus 85 ~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~- 154 (289)
T cd00200 85 CVRT--LTGHTSYVSSVAFSPDGRILSSSSRD------KTIKVWDVETGKCLTTLRGHTDWVN-SVAFSPDGTFVASSS- 154 (289)
T ss_pred ceEE--EeccCCcEEEEEEcCCCCEEEEecCC------CeEEEEECCCcEEEEEeccCCCcEE-EEEEcCcCCEEEEEc-
Confidence 2111 11111111 12222 34666666634 5788999985543221111111111 112223 45555444
Q ss_pred CCcceEEEeCCCC
Q 017349 285 GDCPMKQYNPDDD 297 (373)
Q Consensus 285 ~~~~~~~yd~~~~ 297 (373)
....+..||..+.
T Consensus 155 ~~~~i~i~d~~~~ 167 (289)
T cd00200 155 QDGTIKLWDLRTG 167 (289)
T ss_pred CCCcEEEEEcccc
Confidence 3568899998744
No 94
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.96 E-value=3 Score=38.43 Aligned_cols=200 Identities=14% Similarity=0.135 Sum_probs=103.3
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCCCCc--eeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCC
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRATTNQ--WQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESD 206 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~ 206 (373)
++.+|+... ++ .++.+|+.+.+ |+................-+++||+- ..+ + .+++||..++
T Consensus 68 dg~v~~~~~---~G-----~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g-~~~--g-----~~y~ld~~~G 131 (370)
T COG1520 68 DGTVYVGTR---DG-----NIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVG-SWD--G-----KLYALDASTG 131 (370)
T ss_pred CCeEEEecC---CC-----cEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEe-ccc--c-----eEEEEECCCC
Confidence 899998611 11 79999999986 86543320011111112226776653 332 1 6899999655
Q ss_pred --eEEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCC--ceeecccC-ccCCcceEEEEECCeEEEE
Q 017349 207 --TWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKD--TWNLMSDG-MKEGWTGISIVLEGKLFVI 281 (373)
Q Consensus 207 --~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~--~W~~~~~~-~~~~~~~~~~~~~~~l~v~ 281 (373)
.|+.-..-. .+.....+..++.+|+... ...++++|..++ .|+.-... ......+.....++.+|+.
T Consensus 132 ~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s~-------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~ 203 (370)
T COG1520 132 TLVWSRNVGGS-PYYASPPVVGDGTVYVGTD-------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVG 203 (370)
T ss_pred cEEEEEecCCC-eEEecCcEEcCcEEEEecC-------CCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEe
Confidence 587653332 3333345566788887641 146888888866 48743321 1222222224567777775
Q ss_pred eeCCCcceEEEeCCCC--ceeeecCCCCCCcccccceEEEEeCCEEEEEeCC-ceeeeeEEEEeecCCcccceEEe
Q 017349 282 SEHGDCPMKQYNPDDD--TWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSG-LNVAIGRVYEEQNGGISAEWKVM 354 (373)
Q Consensus 282 gg~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~-~~~~~~~~~~~~~d~~~~~W~~~ 354 (373)
.......++.+|++++ .|+.-...+..... . .-......+.||+=|+. .....+.++....+..+..|+.-
T Consensus 204 ~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~-~-~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~ 277 (370)
T COG1520 204 SDGYDGILYALNAEDGTLKWSQKVSQTIGRTA-I-STTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFP 277 (370)
T ss_pred cCCCcceEEEEEccCCcEeeeeeeecccCccc-c-cccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEe
Confidence 3210236889999765 67753222222100 0 00122333444444331 12223335555566777788743
No 95
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.92 E-value=1.3 Score=40.74 Aligned_cols=137 Identities=12% Similarity=0.096 Sum_probs=72.6
Q ss_pred eeEEEeCCCCceec-cCCCCCcceeeeeeE-eCCeEEEEcCCCCCCCCcCceEEEEeCCCCeE-EeccCCccccccccEE
Q 017349 148 STIMYRATTNQWQL-ASPMLTPRSFFASGN-VNGKIMAVGGTGANINETMTAVECYDPESDTW-TTAAKLRMGLARYDSA 224 (373)
Q Consensus 148 ~~~~yd~~t~~W~~-~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~~~~~~ 224 (373)
.+-.|+..+..=.+ +..+ .+.-.++.+ .+|++.++|+.+ --+.+||..+..- +.+..-..|.....-.
T Consensus 49 rvqly~~~~~~~~k~~srF--k~~v~s~~fR~DG~LlaaGD~s-------G~V~vfD~k~r~iLR~~~ah~apv~~~~f~ 119 (487)
T KOG0310|consen 49 RVQLYSSVTRSVRKTFSRF--KDVVYSVDFRSDGRLLAAGDES-------GHVKVFDMKSRVILRQLYAHQAPVHVTKFS 119 (487)
T ss_pred EEEEEecchhhhhhhHHhh--ccceeEEEeecCCeEEEccCCc-------CcEEEeccccHHHHHHHhhccCceeEEEec
Confidence 56677766553222 2211 122233333 379999999875 2478899554211 1110000010001112
Q ss_pred EECCEEEEEeCccCCCccCCceEEEeCCCCcee-ecccCccCCcceEEEEECCeEEEEeeCCCcceEEEeCCCC-cee
Q 017349 225 VMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWN-LMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDD-TWR 300 (373)
Q Consensus 225 ~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~-~W~ 300 (373)
..++.+++.|+.+ ..+..+|..+..=+ ++..-...-+.+...-.++.|++.||+ ...+..||.... .|.
T Consensus 120 ~~d~t~l~s~sDd------~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsY-Dg~vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 120 PQDNTMLVSGSDD------KVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSY-DGKVRLWDTRSLTSRV 190 (487)
T ss_pred ccCCeEEEecCCC------ceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCC-CceEEEEEeccCCcee
Confidence 3478899888876 45566677666521 111111112333334568899999998 678888998776 444
No 96
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.88 E-value=1.9 Score=35.69 Aligned_cols=140 Identities=15% Similarity=0.161 Sum_probs=74.2
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCCCCce--eccCCC-C-CcceeeeeeEe--CCeEEEEcCCCCCCCCcCceEEEEe
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRATTNQW--QLASPM-L-TPRSFFASGNV--NGKIMAVGGTGANINETMTAVECYD 202 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W--~~~~~~-~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd 202 (373)
.+.+|+|-|. .+|+++...... +.+... + .+..--++... ++++|++-|.. .++|+
T Consensus 16 ~g~~y~FkG~---------~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg~~---------yw~~~ 77 (194)
T cd00094 16 RGELYFFKGR---------YFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKGDK---------YWVYT 77 (194)
T ss_pred CCEEEEEeCC---------EEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECCCE---------EEEEc
Confidence 5999999764 578887652111 111110 1 11112222222 38899997753 77777
Q ss_pred CCCCeE---EeccCCcccc--cc-ccEEEE--CCEEEEEeCccCCCccCCceEEEeCCCCceeec-----cc---CccCC
Q 017349 203 PESDTW---TTAAKLRMGL--AR-YDSAVM--GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLM-----SD---GMKEG 266 (373)
Q Consensus 203 ~~t~~W---~~~~~~~~~~--~~-~~~~~~--~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~-----~~---~~~~~ 266 (373)
..+... +.+.....+. .. -++... ++++|++.| +..++||..+++...- .. ..+..
T Consensus 78 ~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg--------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~ 149 (194)
T cd00094 78 GKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG--------DKYWRYDEKTQKMDPGYPKLIETDFPGVPDK 149 (194)
T ss_pred CcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC--------CEEEEEeCCCccccCCCCcchhhcCCCcCCC
Confidence 654222 1111111111 11 123333 589999988 4578888766654211 10 12222
Q ss_pred cceEEEEE-CCeEEEEeeCCCcceEEEeCCCCc
Q 017349 267 WTGISIVL-EGKLFVISEHGDCPMKQYNPDDDT 298 (373)
Q Consensus 267 ~~~~~~~~-~~~l~v~gg~~~~~~~~yd~~~~~ 298 (373)
. .++... ++++|.+-|. ..++||..+++
T Consensus 150 i-daa~~~~~~~~yfF~g~---~y~~~d~~~~~ 178 (194)
T cd00094 150 V-DAAFRWLDGYYYFFKGD---QYWRFDPRSKE 178 (194)
T ss_pred c-ceeEEeCCCcEEEEECC---EEEEEeCccce
Confidence 2 233333 4899999876 89999998765
No 97
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.87 E-value=2.3 Score=36.68 Aligned_cols=194 Identities=15% Similarity=0.101 Sum_probs=104.5
Q ss_pred CCCCEEEEEEecCCCCceeEEEee----C-CCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCccee
Q 017349 75 LSLPYLFIFSFHKPTARIQWQALD----P-RSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQST 149 (373)
Q Consensus 75 ~~~~~l~~~gg~~~~~~~~~~~~d----~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~ 149 (373)
...+.+|++.+.... .+..|. . ..++....-.||.+- .+-|.++. +|.+|.-- ...+.+
T Consensus 28 ~~~~~iy~~~~~~~~---~v~ey~~~~~f~~~~~~~~~~~Lp~~~----~GtG~vVY--ngslYY~~-------~~s~~I 91 (250)
T PF02191_consen 28 SDSEKIYVTSGFSGN---TVYEYRNYEDFLRNGRSSRTYKLPYPW----QGTGHVVY--NGSLYYNK-------YNSRNI 91 (250)
T ss_pred CCCCCEEEECccCCC---EEEEEcCHhHHhhcCCCceEEEEecee----ccCCeEEE--CCcEEEEe-------cCCceE
Confidence 446678887654333 344442 2 233333333344221 34445554 77777542 346689
Q ss_pred EEEeCCCCc---eeccCCCCC---------cceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCC----eEEeccC
Q 017349 150 IMYRATTNQ---WQLASPMLT---------PRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESD----TWTTAAK 213 (373)
Q Consensus 150 ~~yd~~t~~---W~~~~~~~~---------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~----~W~~~~~ 213 (373)
.+||..+++ +..++.... +-...-.++.++-|+++-... .....--+-..|+.+- +|..-
T Consensus 92 vkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~--~~~g~ivvskld~~tL~v~~tw~T~-- 167 (250)
T PF02191_consen 92 VKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATE--DNNGNIVVSKLDPETLSVEQTWNTS-- 167 (250)
T ss_pred EEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecC--CCCCcEEEEeeCcccCceEEEEEec--
Confidence 999999996 444543221 112233455567788875553 2111123445566543 56532
Q ss_pred CccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEE-EE---ECCeEEEEeeCCCcce
Q 017349 214 LRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGIS-IV---LEGKLFVISEHGDCPM 289 (373)
Q Consensus 214 ~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~-~~---~~~~l~v~gg~~~~~~ 289 (373)
.+.. ....+.+.-|.||++-...... ..-.++||+.+++=..+..+.+.+....+ +. .+.+||+... ...
T Consensus 168 ~~k~-~~~naFmvCGvLY~~~s~~~~~--~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~---G~~ 241 (250)
T PF02191_consen 168 YPKR-SAGNAFMVCGVLYATDSYDTRD--TEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWDN---GYQ 241 (250)
T ss_pred cCch-hhcceeeEeeEEEEEEECCCCC--cEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEEC---CeE
Confidence 3332 2233566688999997665322 35668999998876655444433333333 33 3678888753 366
Q ss_pred EEEeC
Q 017349 290 KQYNP 294 (373)
Q Consensus 290 ~~yd~ 294 (373)
..|++
T Consensus 242 v~Y~v 246 (250)
T PF02191_consen 242 VTYDV 246 (250)
T ss_pred EEEEE
Confidence 66665
No 98
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=94.87 E-value=0.36 Score=36.92 Aligned_cols=81 Identities=12% Similarity=0.142 Sum_probs=57.7
Q ss_pred EEECCeEEEEeeC---CCcceEEEeCCCCceeeecCCCCCCcccccceEEEEeCCEEEEEeCCcee--eeeEEEEeecCC
Q 017349 272 IVLEGKLFVISEH---GDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNV--AIGRVYEEQNGG 346 (373)
Q Consensus 272 ~~~~~~l~v~gg~---~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~--~~~~~~~~~~d~ 346 (373)
+.+||.+|.++.. ....+.+||.++++|+.+.. |...........++.++|+|-++.-.... ...+++.++ |.
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~-P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLe-D~ 79 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKL-PEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLE-DY 79 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEe-eeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEee-cc
Confidence 4679999988764 25789999999999998874 31113346678889999999998765432 245566644 66
Q ss_pred cccceEEe
Q 017349 347 ISAEWKVM 354 (373)
Q Consensus 347 ~~~~W~~~ 354 (373)
++.+|.+-
T Consensus 80 ~k~~Wsk~ 87 (129)
T PF08268_consen 80 EKQEWSKK 87 (129)
T ss_pred ccceEEEE
Confidence 77899953
No 99
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.86 E-value=3.3 Score=38.44 Aligned_cols=224 Identities=8% Similarity=0.075 Sum_probs=106.0
Q ss_pred eCCCCCeeeCCCCCCC--CCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCC-Ccceeeee
Q 017349 98 DPRSGRWFVLPPMPCP--KAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPML-TPRSFFAS 174 (373)
Q Consensus 98 d~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~r~~~~~ 174 (373)
+-.-++|.... +|.. .....+-.+.... ++..|++|-. ..++.=+-.-++|++++..+ .+......
T Consensus 116 ~DGG~tW~~~~-~~~~~~~~~~~~l~~v~f~--~~~g~~vG~~--------G~il~T~DgG~tW~~~~~~~~~p~~~~~i 184 (398)
T PLN00033 116 KDGGKTWVPRS-IPSAEDEDFNYRFNSISFK--GKEGWIIGKP--------AILLHTSDGGETWERIPLSPKLPGEPVLI 184 (398)
T ss_pred cCCCCCceECc-cCcccccccccceeeeEEE--CCEEEEEcCc--------eEEEEEcCCCCCceECccccCCCCCceEE
Confidence 33456788753 2211 1011122333343 6788888642 13444444456899875421 12112223
Q ss_pred eEe-CCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCc------cccc------------cccEE-EECCEEEEEe
Q 017349 175 GNV-NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLR------MGLA------------RYDSA-VMGSKMYVTE 234 (373)
Q Consensus 175 ~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~------~~~~------------~~~~~-~~~~~lyv~g 234 (373)
... ++..+++|... .+++=+-.-.+|+.+...+ .... ..... .-++.++++|
T Consensus 185 ~~~~~~~~~ivg~~G--------~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg 256 (398)
T PLN00033 185 KATGPKSAEMVTDEG--------AIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVS 256 (398)
T ss_pred EEECCCceEEEeccc--------eEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEE
Confidence 334 34577776432 2333333445798762111 1000 00111 1245555555
Q ss_pred CccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEeCCCCcee--eecCCCCCCccc
Q 017349 235 GWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWR--YVGGDKFPCEVM 312 (373)
Q Consensus 235 G~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~W~--~~~~~~~~~~~~ 312 (373)
-.. +-+...|.....|+.+..+.+.........-++.++++|..+ .+..-+-....|+ .+...+.+. ..
T Consensus 257 ~~G------~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G--~l~~S~d~G~~~~~~~f~~~~~~~-~~ 327 (398)
T PLN00033 257 SRG------NFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGG--GLYVSKGTGLTEEDFDFEEADIKS-RG 327 (398)
T ss_pred CCc------cEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCc--eEEEecCCCCcccccceeecccCC-CC
Confidence 432 222233444445998876555554444455688899887643 4444444444443 222222220 00
Q ss_pred ccceEEE-EeCCEEEEEeCCceeeeeEEEEeecCCcccceEEecC
Q 017349 313 HRPFAVN-GVEGKIYVVSSGLNVAIGRVYEEQNGGISAEWKVMTA 356 (373)
Q Consensus 313 ~~~~~~~-~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~W~~~~~ 356 (373)
....++. .-++.++++|.. +.++. -..+...|+....
T Consensus 328 ~~l~~v~~~~d~~~~a~G~~-----G~v~~--s~D~G~tW~~~~~ 365 (398)
T PLN00033 328 FGILDVGYRSKKEAWAAGGS-----GILLR--STDGGKSWKRDKG 365 (398)
T ss_pred cceEEEEEcCCCcEEEEECC-----CcEEE--eCCCCcceeEccc
Confidence 1123333 346789888874 22333 3456677887654
No 100
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.78 E-value=1.7 Score=37.54 Aligned_cols=183 Identities=15% Similarity=0.112 Sum_probs=104.6
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCC-----CCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeC
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRAT-----TNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDP 203 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~-----t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~ 203 (373)
++++|++.+..++ .++.|... .++..+.-.+|.+-.+.+.++++|.+|.--. ..+.+..||+
T Consensus 30 ~~~iy~~~~~~~~------~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~-------~s~~IvkydL 96 (250)
T PF02191_consen 30 SEKIYVTSGFSGN------TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY-------NSRNIVKYDL 96 (250)
T ss_pred CCCEEEECccCCC------EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec-------CCceEEEEEC
Confidence 6789998876322 56666432 3333333345555666677778888886433 3578999999
Q ss_pred CCCeE---EeccCCcc------cccccc---EEEECCEEEEEeCccCCCccCCceEEEeCCCC----ceeecccCccCCc
Q 017349 204 ESDTW---TTAAKLRM------GLARYD---SAVMGSKMYVTEGWTWPFMFSPRGGVYDINKD----TWNLMSDGMKEGW 267 (373)
Q Consensus 204 ~t~~W---~~~~~~~~------~~~~~~---~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~----~W~~~~~~~~~~~ 267 (373)
.++.- ..++.... ....+. .++-++-|+++-...... ..-.+-..|+.+- +|.. ..+...
T Consensus 97 ~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~-g~ivvskld~~tL~v~~tw~T---~~~k~~ 172 (250)
T PF02191_consen 97 TTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN-GNIVVSKLDPETLSVEQTWNT---SYPKRS 172 (250)
T ss_pred cCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC-CcEEEEeeCcccCceEEEEEe---ccCchh
Confidence 99864 44432211 111111 234455577764433211 1124455677654 4643 234445
Q ss_pred ceEEEEECCeEEEEeeCC---CcceEEEeCCCCceeeecCCCCCCcccccceEEEEe---CCEEEEEeCC
Q 017349 268 TGISIVLEGKLFVISEHG---DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGV---EGKIYVVSSG 331 (373)
Q Consensus 268 ~~~~~~~~~~l~v~gg~~---~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~GG~ 331 (373)
.+.+.+.=|.||++.... ..-...||..+++=..+. ++.+ ......+++.+ +.+||+.--+
T Consensus 173 ~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~-i~f~--~~~~~~~~l~YNP~dk~LY~wd~G 239 (250)
T PF02191_consen 173 AGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVS-IPFP--NPYGNISMLSYNPRDKKLYAWDNG 239 (250)
T ss_pred hcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceecee-eeec--cccCceEeeeECCCCCeEEEEECC
Confidence 555666778999997764 334568999988666443 3444 22344555554 5789988653
No 101
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.77 E-value=3.8 Score=38.70 Aligned_cols=146 Identities=14% Similarity=0.036 Sum_probs=75.8
Q ss_pred ceeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEE
Q 017349 147 QSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVM 226 (373)
Q Consensus 147 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 226 (373)
..++++|+.+++.+.+...+.........--+.+|++....+ ...+++.+|..++.-+.+...+.. .......-
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~~~~~~~Lt~~~~~-~~~~~~sp 299 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQG-----GNTDIYTMDLRSGTTTRLTDSPAI-DTSPSYSP 299 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecC-----CCceEEEEECCCCceEEccCCCCc-cCceeEcC
Confidence 489999999988777654432211111111234554443322 235789999998887776543221 11112222
Q ss_pred CCE-EEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEECCe-EEEEeeC-CCcceEEEeCCCCceeeec
Q 017349 227 GSK-MYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGK-LFVISEH-GDCPMKQYNPDDDTWRYVG 303 (373)
Q Consensus 227 ~~~-lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-l~v~gg~-~~~~~~~yd~~~~~W~~~~ 303 (373)
+|+ |++..... ....++.+|..++..+.+... ..........-+|+ |++.... +...++.+|++.+....+.
T Consensus 300 DG~~i~f~s~~~----g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 300 DGSQIVFESDRS----GSPQLYVMNADGSNPRRISFG-GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT 374 (435)
T ss_pred CCCEEEEEECCC----CCCeEEEEECCCCCeEEeecC-CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc
Confidence 554 44332211 124789999888777666431 11111112222444 4444322 1357888998776655543
No 102
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.72 E-value=1.5 Score=40.34 Aligned_cols=173 Identities=10% Similarity=0.121 Sum_probs=88.7
Q ss_pred ceeEEEeeCCCCCeee-CCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCce-eccCCCCCc
Q 017349 91 RIQWQALDPRSGRWFV-LPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQW-QLASPMLTP 168 (373)
Q Consensus 91 ~~~~~~~d~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~ 168 (373)
...+..|+..+..-.+ ++... ....++.+-++|+++.+|+..+ .+-+||..++.- +.+..-..|
T Consensus 47 S~rvqly~~~~~~~~k~~srFk-------~~v~s~~fR~DG~LlaaGD~sG-------~V~vfD~k~r~iLR~~~ah~ap 112 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSRFK-------DVVYSVDFRSDGRLLAAGDESG-------HVKVFDMKSRVILRQLYAHQAP 112 (487)
T ss_pred ccEEEEEecchhhhhhhHHhhc-------cceeEEEeecCCeEEEccCCcC-------cEEEeccccHHHHHHHhhccCc
Confidence 4457778877654433 22222 2223333334899999998632 688999555321 112111112
Q ss_pred ceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccc---cccccEEEECCEEEEEeCccCCCccCCc
Q 017349 169 RSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMG---LARYDSAVMGSKMYVTEGWTWPFMFSPR 245 (373)
Q Consensus 169 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~---~~~~~~~~~~~~lyv~gG~~~~~~~~~~ 245 (373)
-..--....++.+++.|+-+ .-+..+|..+.. . ...+... ....+....++.|.+.||++ ..
T Consensus 113 v~~~~f~~~d~t~l~s~sDd-------~v~k~~d~s~a~-v-~~~l~~htDYVR~g~~~~~~~hivvtGsYD------g~ 177 (487)
T KOG0310|consen 113 VHVTKFSPQDNTMLVSGSDD-------KVVKYWDLSTAY-V-QAELSGHTDYVRCGDISPANDHIVVTGSYD------GK 177 (487)
T ss_pred eeEEEecccCCeEEEecCCC-------ceEEEEEcCCcE-E-EEEecCCcceeEeeccccCCCeEEEecCCC------ce
Confidence 22222334678888888754 224445555444 1 1122211 11112233477899999998 57
Q ss_pred eEEEeCCCC-ceee-cccCccCCcceEEEEECCeEEEEeeCCCcceEEEeCCC
Q 017349 246 GGVYDINKD-TWNL-MSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDD 296 (373)
Q Consensus 246 i~~yd~~~~-~W~~-~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~ 296 (373)
|-.||+.+. .|.. +. ...+-......-+|.+++..| .+.+.+||..+
T Consensus 178 vrl~DtR~~~~~v~eln--hg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~ 226 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVVELN--HGCPVESVLALPSGSLIASAG--GNSVKVWDLTT 226 (487)
T ss_pred EEEEEeccCCceeEEec--CCCceeeEEEcCCCCEEEEcC--CCeEEEEEecC
Confidence 888999877 4432 21 111222222223445555443 23777777763
No 103
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.68 E-value=3.9 Score=38.49 Aligned_cols=181 Identities=7% Similarity=-0.017 Sum_probs=92.5
Q ss_pred ceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccC-CEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcc
Q 017349 91 RIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQ-GKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPR 169 (373)
Q Consensus 91 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r 169 (373)
..+++++|+.+++-..+...+.. .. ......+ ++|++..... ...+++++|..++..+++......-
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~------~~-~~~~SpDG~~la~~~~~~-----g~~~Iy~~d~~~~~~~~lt~~~~~~ 289 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGL------NG-APAWSPDGSKLAFVLSKD-----GNPEIYVMDLASRQLSRVTNHPAID 289 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCC------cC-CeEECCCCCEEEEEEccC-----CCceEEEEECCCCCeEEcccCCCCc
Confidence 45688889888877776544411 11 1222224 4555433221 1247999999999887765432111
Q ss_pred eeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEE-EECC-EEEEEeCccCCCccCCceE
Q 017349 170 SFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSA-VMGS-KMYVTEGWTWPFMFSPRGG 247 (373)
Q Consensus 170 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~-~~~~-~lyv~gG~~~~~~~~~~i~ 247 (373)
.......-+.+|+...... ....++.+|..+++++.+.... ....... .-+| .|++..... + ...++
T Consensus 290 ~~~~~spDg~~i~f~s~~~-----g~~~iy~~d~~~g~~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~~--~--~~~l~ 358 (430)
T PRK00178 290 TEPFWGKDGRTLYFTSDRG-----GKPQIYKVNVNGGRAERVTFVG--NYNARPRLSADGKTLVMVHRQD--G--NFHVA 358 (430)
T ss_pred CCeEECCCCCEEEEEECCC-----CCceEEEEECCCCCEEEeecCC--CCccceEECCCCCEEEEEEccC--C--ceEEE
Confidence 1111111234555543221 1346899999988887764211 1111222 2244 454443322 1 24689
Q ss_pred EEeCCCCceeecccCccCCcceEEEEECCeEEEEeeCC--CcceEEEeCCC
Q 017349 248 VYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHG--DCPMKQYNPDD 296 (373)
Q Consensus 248 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~--~~~~~~yd~~~ 296 (373)
.+|+.++..+.+... ... ......-+|+.+++.... ...++..+...
T Consensus 359 ~~dl~tg~~~~lt~~-~~~-~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 359 AQDLQRGSVRILTDT-SLD-ESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred EEECCCCCEEEccCC-CCC-CCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 999999888776542 111 112233366655554322 23566666643
No 104
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.59 E-value=7.4 Score=41.26 Aligned_cols=230 Identities=11% Similarity=0.101 Sum_probs=120.4
Q ss_pred CCEEEEEEecCCCCceeEEEeeCCCCCeeeCCCCCCC--------CCCCCCceEEEEeccCCEEEEEcCccCCCCCCcce
Q 017349 77 LPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCP--------KAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQS 148 (373)
Q Consensus 77 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~ 148 (373)
++.||+.. ...+.+.++|+..+.-..+...... ......-++.++...++.|||.... .+.
T Consensus 579 ~g~lyVaD----s~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~-------n~~ 647 (1057)
T PLN02919 579 NNRLFISD----SNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE-------NHA 647 (1057)
T ss_pred CCeEEEEE----CCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC-------Cce
Confidence 45667653 3445688888865433233221100 0011233566665446778987543 236
Q ss_pred eEEEeCCCCceeccCCC-------C--------CcceeeeeeEe--CCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEec
Q 017349 149 TIMYRATTNQWQLASPM-------L--------TPRSFFASGNV--NGKIMAVGGTGANINETMTAVECYDPESDTWTTA 211 (373)
Q Consensus 149 ~~~yd~~t~~W~~~~~~-------~--------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~ 211 (373)
+.++|+.++.-+.+..- . .-...+.+++. ++.+|+....+ ..+++||+.++....+
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~-------~~I~v~d~~~g~v~~~ 720 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ-------HQIWEYNISDGVTRVF 720 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC-------CeEEEEECCCCeEEEE
Confidence 78888877654433210 0 00111233333 67888875432 4588888877765433
Q ss_pred cCC----------cc--cccccc-EEEE-C-CEEEEEeCccCCCccCCceEEEeCCCCceeecc--cC-----c-c----
Q 017349 212 AKL----------RM--GLARYD-SAVM-G-SKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMS--DG-----M-K---- 264 (373)
Q Consensus 212 ~~~----------~~--~~~~~~-~~~~-~-~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~--~~-----~-~---- 264 (373)
..- .. ....+. .++. + +.||+....+ +.|.+||+.++....+. .+ . .
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n------~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~ 794 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES------SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDH 794 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC------CeEEEEECCCCcEEEEEecccccCcccccccCC
Confidence 210 00 001122 2332 3 3599886544 68999999876533211 00 0 0
Q ss_pred ---------CCcceEEEEECCeEEEEeeCCCcceEEEeCCCCceeeecCCCCC--------CcccccceEEEE-eCCEEE
Q 017349 265 ---------EGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFP--------CEVMHRPFAVNG-VEGKIY 326 (373)
Q Consensus 265 ---------~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~--------~~~~~~~~~~~~-~~~~l~ 326 (373)
..-.+.++.-+|.|||.... +..|.+||++++....+.....+ ........+++. -+|+||
T Consensus 795 dG~g~~~~l~~P~Gvavd~dG~LYVADs~-N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ly 873 (1057)
T PLN02919 795 DGVGSEVLLQHPLGVLCAKDGQIYVADSY-NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLF 873 (1057)
T ss_pred CCchhhhhccCCceeeEeCCCcEEEEECC-CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEE
Confidence 00012223446789988654 67899999998877766532211 011223455544 467899
Q ss_pred EEeCC
Q 017349 327 VVSSG 331 (373)
Q Consensus 327 i~GG~ 331 (373)
|....
T Consensus 874 VaDt~ 878 (1057)
T PLN02919 874 VADTN 878 (1057)
T ss_pred EEECC
Confidence 98764
No 105
>PRK03629 tolB translocation protein TolB; Provisional
Probab=94.53 E-value=4.3 Score=38.27 Aligned_cols=147 Identities=10% Similarity=-0.004 Sum_probs=76.4
Q ss_pred ceeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEE-E
Q 017349 147 QSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSA-V 225 (373)
Q Consensus 147 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~-~ 225 (373)
..++++|..+++-+.+...+..-......--+.+|++....+ ....++++|..+++.+.+..-+.. ..... .
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~-----g~~~I~~~d~~tg~~~~lt~~~~~--~~~~~wS 295 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT-----GSLNLYVMDLASGQIRQVTDGRSN--NTEPTWF 295 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCC-----CCcEEEEEECCCCCEEEccCCCCC--cCceEEC
Confidence 478999998887666654432111111111234555543322 123589999999887776543221 11122 2
Q ss_pred ECCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEECCeEEEE-eeCC-CcceEEEeCCCCceeeec
Q 017349 226 MGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVI-SEHG-DCPMKQYNPDDDTWRYVG 303 (373)
Q Consensus 226 ~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~v~-gg~~-~~~~~~yd~~~~~W~~~~ 303 (373)
-+|+.+++..... ....++.+|+.++.-+.+... ..........-+|+.+++ +..+ ...++.+|+++++++.+.
T Consensus 296 PDG~~I~f~s~~~---g~~~Iy~~d~~~g~~~~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt 371 (429)
T PRK03629 296 PDSQNLAYTSDQA---GRPQVYKVNINGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT 371 (429)
T ss_pred CCCCEEEEEeCCC---CCceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC
Confidence 2555333332211 124788889988766655321 111111222234544443 3322 356889999999888776
Q ss_pred C
Q 017349 304 G 304 (373)
Q Consensus 304 ~ 304 (373)
.
T Consensus 372 ~ 372 (429)
T PRK03629 372 D 372 (429)
T ss_pred C
Confidence 3
No 106
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.39 E-value=2.1 Score=35.92 Aligned_cols=133 Identities=14% Similarity=0.181 Sum_probs=78.3
Q ss_pred eeEEEeCCCCceeccCCCC-CcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEE
Q 017349 148 STIMYRATTNQWQLASPML-TPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVM 226 (373)
Q Consensus 148 ~~~~yd~~t~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 226 (373)
.+-.|||..+.-.+.-.-. ..... +....++.-++-+|-+ ..++++|..|++-.+ .+......-.++.+
T Consensus 40 tvrLWNp~rg~liktYsghG~EVlD-~~~s~Dnskf~s~GgD-------k~v~vwDV~TGkv~R--r~rgH~aqVNtV~f 109 (307)
T KOG0316|consen 40 TVRLWNPLRGALIKTYSGHGHEVLD-AALSSDNSKFASCGGD-------KAVQVWDVNTGKVDR--RFRGHLAQVNTVRF 109 (307)
T ss_pred eEEeecccccceeeeecCCCceeee-ccccccccccccCCCC-------ceEEEEEcccCeeee--ecccccceeeEEEe
Confidence 5777888777544332211 11111 2223444445555543 468999999986311 11111112223334
Q ss_pred C--CEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEE-EEECCeEEEEeeCCCcceEEEeCCCCc
Q 017349 227 G--SKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGIS-IVLEGKLFVISEHGDCPMKQYNPDDDT 298 (373)
Q Consensus 227 ~--~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~v~gg~~~~~~~~yd~~~~~ 298 (373)
| ..+.+.|+.+ ..+.+||..+++.++++. +.....+.. +.+.+..++.|.. ...+..||+..++
T Consensus 110 NeesSVv~SgsfD------~s~r~wDCRS~s~ePiQi-ldea~D~V~Si~v~~heIvaGS~-DGtvRtydiR~G~ 176 (307)
T KOG0316|consen 110 NEESSVVASGSFD------SSVRLWDCRSRSFEPIQI-LDEAKDGVSSIDVAEHEIVAGSV-DGTVRTYDIRKGT 176 (307)
T ss_pred cCcceEEEecccc------ceeEEEEcccCCCCccch-hhhhcCceeEEEecccEEEeecc-CCcEEEEEeecce
Confidence 3 3477777777 689999999999988876 444444433 7778888877765 5678888886653
No 107
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.39 E-value=5.7 Score=39.08 Aligned_cols=151 Identities=9% Similarity=0.150 Sum_probs=95.2
Q ss_pred CEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEE
Q 017349 130 GKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWT 209 (373)
Q Consensus 130 ~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~ 209 (373)
|.=+.+|+. ....+.+|+-.+++......-...|.......-++.+.+.|+.+ ..+-+||..++-.-
T Consensus 319 GDWiA~g~~------klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD-------gKVKvWn~~SgfC~ 385 (893)
T KOG0291|consen 319 GDWIAFGCS------KLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAED-------GKVKVWNTQSGFCF 385 (893)
T ss_pred CCEEEEcCC------ccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCC-------CcEEEEeccCceEE
Confidence 566666653 24578899888777655544444555544455578888888876 35778888776432
Q ss_pred eccCCccccccccEEE--ECCEEEEEeCccCCCccCCceEEEeCCCCc-eeecccCccCCcceEEEEEC--CeEEEEeeC
Q 017349 210 TAAKLRMGLARYDSAV--MGSKMYVTEGWTWPFMFSPRGGVYDINKDT-WNLMSDGMKEGWTGISIVLE--GKLFVISEH 284 (373)
Q Consensus 210 ~~~~~~~~~~~~~~~~--~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~--~~l~v~gg~ 284 (373)
. .+..+-+.++++. ..|+..+....+ ..+-++|+...+ ++....| .+....++..+ |.|.++|+.
T Consensus 386 v--TFteHts~Vt~v~f~~~g~~llssSLD------GtVRAwDlkRYrNfRTft~P--~p~QfscvavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 386 V--TFTEHTSGVTAVQFTARGNVLLSSSLD------GTVRAWDLKRYRNFRTFTSP--EPIQFSCVAVDPSGELVCAGAQ 455 (893)
T ss_pred E--EeccCCCceEEEEEEecCCEEEEeecC------CeEEeeeecccceeeeecCC--CceeeeEEEEcCCCCEEEeecc
Confidence 1 1222333333332 255555555444 467788887654 5555433 33344455566 999999998
Q ss_pred CCcceEEEeCCCCceeeec
Q 017349 285 GDCPMKQYNPDDDTWRYVG 303 (373)
Q Consensus 285 ~~~~~~~yd~~~~~W~~~~ 303 (373)
+...|++++.++++-..+=
T Consensus 456 d~F~IfvWS~qTGqllDiL 474 (893)
T KOG0291|consen 456 DSFEIFVWSVQTGQLLDIL 474 (893)
T ss_pred ceEEEEEEEeecCeeeehh
Confidence 8889999999999877653
No 108
>PRK04922 tolB translocation protein TolB; Provisional
Probab=94.30 E-value=4.8 Score=37.96 Aligned_cols=146 Identities=10% Similarity=-0.004 Sum_probs=77.5
Q ss_pred cceeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEE-
Q 017349 146 MQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSA- 224 (373)
Q Consensus 146 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~- 224 (373)
...++++|..+++-+.+...+..........-+.+|++....+ + ..+++++|+.++.-+.+..-... .....
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~--g---~~~Iy~~d~~~g~~~~lt~~~~~--~~~~~~ 299 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRD--G---NPEIYVMDLGSRQLTRLTNHFGI--DTEPTW 299 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCC--C---CceEEEEECCCCCeEECccCCCC--ccceEE
Confidence 3479999999887766654432111111111234555443222 1 25799999998887666432211 11122
Q ss_pred EECCE-EEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEECC-eEEEEeeCC-CcceEEEeCCCCceee
Q 017349 225 VMGSK-MYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEG-KLFVISEHG-DCPMKQYNPDDDTWRY 301 (373)
Q Consensus 225 ~~~~~-lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l~v~gg~~-~~~~~~yd~~~~~W~~ 301 (373)
.-+|+ |++..... ....++.+|..++..+.+.. ...........-+| .|++..+.+ ...++++|..+++.+.
T Consensus 300 spDG~~l~f~sd~~----g~~~iy~~dl~~g~~~~lt~-~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~ 374 (433)
T PRK04922 300 APDGKSIYFTSDRG----GRPQIYRVAASGGSAERLTF-QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT 374 (433)
T ss_pred CCCCCEEEEEECCC----CCceEEEEECCCCCeEEeec-CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE
Confidence 22555 44433222 12468899998888776642 11111112222244 455544322 3478999998888776
Q ss_pred ec
Q 017349 302 VG 303 (373)
Q Consensus 302 ~~ 303 (373)
+.
T Consensus 375 Lt 376 (433)
T PRK04922 375 LT 376 (433)
T ss_pred CC
Confidence 65
No 109
>smart00284 OLF Olfactomedin-like domains.
Probab=94.28 E-value=1.7 Score=37.36 Aligned_cols=140 Identities=11% Similarity=0.073 Sum_probs=78.8
Q ss_pred CCEEEEEeCccCCCccCCceEEEeC----CCCceeecccCccCCcceEE-EEECCeEEEEeeCCCcceEEEeCCCCceee
Q 017349 227 GSKMYVTEGWTWPFMFSPRGGVYDI----NKDTWNLMSDGMKEGWTGIS-IVLEGKLFVISEHGDCPMKQYNPDDDTWRY 301 (373)
Q Consensus 227 ~~~lyv~gG~~~~~~~~~~i~~yd~----~~~~W~~~~~~~~~~~~~~~-~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~ 301 (373)
++++|++.+.. .....+..|.. ..+.+...-. +|....+.. ++.+|.||.--.. ...|.+||+.+++-..
T Consensus 34 ~~~~wv~~~~~---~~~~~v~ey~~~~~f~~~~~~~~~~-Lp~~~~GtG~VVYngslYY~~~~-s~~iiKydL~t~~v~~ 108 (255)
T smart00284 34 KSLYWYMPLNT---RVLRSVREYSSMSDFQMGKNPTDHP-LPHAGQGTGVVVYNGSLYFNKFN-SHDICRFDLTTETYQK 108 (255)
T ss_pred CceEEEEcccc---CCCcEEEEecCHHHHhccCCceEEE-CCCccccccEEEECceEEEEecC-CccEEEEECCCCcEEE
Confidence 46788876542 11234555543 2334433222 444555555 8999999986443 5789999999987765
Q ss_pred ecCCCCCC--ccc------ccceEEEEeCCEEEEEeCCcee----eeeEEEEeecCCcccceEEecCCCCcCcceeeeeE
Q 017349 302 VGGDKFPC--EVM------HRPFAVNGVEGKIYVVSSGLNV----AIGRVYEEQNGGISAEWKVMTAPRAFKDLAPSSCQ 369 (373)
Q Consensus 302 ~~~~~~~~--~~~------~~~~~~~~~~~~l~i~GG~~~~----~~~~~~~~~~d~~~~~W~~~~~p~~~~~~~~~~~~ 369 (373)
...+|... ... ....-+++.++-|++|=....+ .+.++-...++. ...|.. +.|..-.+.+...|-
T Consensus 109 ~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~v-e~tW~T-~~~k~sa~naFmvCG 186 (255)
T smart00284 109 EPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTI-ENTWIT-TYNKRSASNAFMICG 186 (255)
T ss_pred EEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceE-EEEEEc-CCCcccccccEEEee
Confidence 55444321 000 1112345556667776332111 122332222433 357876 666666778999999
Q ss_pred EeeC
Q 017349 370 VVYA 373 (373)
Q Consensus 370 ~~~~ 373 (373)
|+|+
T Consensus 187 vLY~ 190 (255)
T smart00284 187 ILYV 190 (255)
T ss_pred EEEE
Confidence 9985
No 110
>PRK13684 Ycf48-like protein; Provisional
Probab=94.26 E-value=4.1 Score=36.95 Aligned_cols=214 Identities=11% Similarity=0.169 Sum_probs=102.1
Q ss_pred CCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCC-CCCcce-eeeeeEe
Q 017349 100 RSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASP-MLTPRS-FFASGNV 177 (373)
Q Consensus 100 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~-~~~~r~-~~~~~~~ 177 (373)
..+.|+... ++... .-+..+.. ..++.|++|-. ..+++=+-.-++|++... ++.... ...+...
T Consensus 33 ~~~~W~~~~-~~~~~----~l~~v~F~-d~~~g~avG~~--------G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~ 98 (334)
T PRK13684 33 SSSPWQVID-LPTEA----NLLDIAFT-DPNHGWLVGSN--------RTLLETNDGGETWEERSLDLPEENFRLISISFK 98 (334)
T ss_pred cCCCcEEEe-cCCCC----ceEEEEEe-CCCcEEEEECC--------CEEEEEcCCCCCceECccCCcccccceeeeEEc
Confidence 345687764 34121 23334443 25667777632 134444444568988643 322222 2223333
Q ss_pred CCeEEEEcCCCCCCCCcCceEEEEeCC--CCeEEeccCC-ccccccccEEEE-CCEEEEEeCccCCCccCCceEEEeCCC
Q 017349 178 NGKIMAVGGTGANINETMTAVECYDPE--SDTWTTAAKL-RMGLARYDSAVM-GSKMYVTEGWTWPFMFSPRGGVYDINK 253 (373)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~~~yd~~--t~~W~~~~~~-~~~~~~~~~~~~-~~~lyv~gG~~~~~~~~~~i~~yd~~~ 253 (373)
++..|+.|... .+|... -.+|+.+... ..+......... ++.+++.|.. ..+++=+-.-
T Consensus 99 ~~~~~~~G~~g----------~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG 161 (334)
T PRK13684 99 GDEGWIVGQPS----------LLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV-------GAIYRTTDGG 161 (334)
T ss_pred CCcEEEeCCCc----------eEEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc-------ceEEEECCCC
Confidence 55566665321 234333 3479988521 111111222233 3446655542 2455555556
Q ss_pred CceeecccCccCCcceEEEEECCeEEEEeeCCCcceEEE-eCCCCceeeecCCCCCCcccccceEEE-EeCCEEEEEeCC
Q 017349 254 DTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQY-NPDDDTWRYVGGDKFPCEVMHRPFAVN-GVEGKIYVVSSG 331 (373)
Q Consensus 254 ~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~y-d~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~GG~ 331 (373)
.+|+.+..+...........-++.++++|.. ..++.- |....+|+.+.. +.. ....+++ ..++.++++|..
T Consensus 162 ~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~--G~i~~s~~~gg~tW~~~~~-~~~----~~l~~i~~~~~g~~~~vg~~ 234 (334)
T PRK13684 162 KNWEALVEDAAGVVRNLRRSPDGKYVAVSSR--GNFYSTWEPGQTAWTPHQR-NSS----RRLQSMGFQPDGNLWMLARG 234 (334)
T ss_pred CCceeCcCCCcceEEEEEECCCCeEEEEeCC--ceEEEEcCCCCCeEEEeeC-CCc----ccceeeeEcCCCCEEEEecC
Confidence 7899887644222222222224444444433 244443 445568998864 222 2334443 346788888764
Q ss_pred ceeeeeEEEEeecCCcccceEEecCC
Q 017349 332 LNVAIGRVYEEQNGGISAEWKVMTAP 357 (373)
Q Consensus 332 ~~~~~~~~~~~~~d~~~~~W~~~~~p 357 (373)
.. +.. .-+.+...|+.+..|
T Consensus 235 G~-----~~~-~s~d~G~sW~~~~~~ 254 (334)
T PRK13684 235 GQ-----IRF-NDPDDLESWSKPIIP 254 (334)
T ss_pred CE-----EEE-ccCCCCCccccccCC
Confidence 21 111 013555678866555
No 111
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.20 E-value=5 Score=37.76 Aligned_cols=147 Identities=8% Similarity=-0.059 Sum_probs=78.3
Q ss_pred ceeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEE
Q 017349 147 QSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVM 226 (373)
Q Consensus 147 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 226 (373)
..++++|..+++-+.+...+..-.......-+.+|++....+ + ..+++++|..++..+.+...+.... .....-
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~--g---~~~Iy~~d~~~~~~~~lt~~~~~~~-~~~~sp 296 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKD--G---NPEIYVMDLASRQLSRVTNHPAIDT-EPFWGK 296 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccC--C---CceEEEEECCCCCeEEcccCCCCcC-CeEECC
Confidence 479999999987776654331111111111234554433221 1 2579999999998877754222111 111222
Q ss_pred CC-EEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEEC-CeEEEEeeCC-CcceEEEeCCCCceeeec
Q 017349 227 GS-KMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLE-GKLFVISEHG-DCPMKQYNPDDDTWRYVG 303 (373)
Q Consensus 227 ~~-~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~l~v~gg~~-~~~~~~yd~~~~~W~~~~ 303 (373)
+| .|++..... ....++.+|..++.++.+... ..........-+ +.|++..... ...++.+|+.+++.+.+.
T Consensus 297 Dg~~i~f~s~~~----g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt 371 (430)
T PRK00178 297 DGRTLYFTSDRG----GKPQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT 371 (430)
T ss_pred CCCEEEEEECCC----CCceEEEEECCCCCEEEeecC-CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEcc
Confidence 44 455543221 124789999998888776431 111111112223 4454443322 346889999998887775
Q ss_pred C
Q 017349 304 G 304 (373)
Q Consensus 304 ~ 304 (373)
.
T Consensus 372 ~ 372 (430)
T PRK00178 372 D 372 (430)
T ss_pred C
Confidence 3
No 112
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.19 E-value=1.4 Score=42.64 Aligned_cols=114 Identities=19% Similarity=0.304 Sum_probs=68.1
Q ss_pred eeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCe--EEeccCCcccc--------ccccEEEECCEEEEEeCccCCCcc
Q 017349 173 ASGNVNGKIMAVGGTGANINETMTAVECYDPESDT--WTTAAKLRMGL--------ARYDSAVMGSKMYVTEGWTWPFMF 242 (373)
Q Consensus 173 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~--------~~~~~~~~~~~lyv~gG~~~~~~~ 242 (373)
+-++.+++||+.... ..++.+|..|++ |+.-...+... .....++.+++||+....
T Consensus 64 tPvv~~g~vyv~s~~--------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d------ 129 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY--------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD------ 129 (527)
T ss_pred CCEEECCEEEEECCC--------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC------
Confidence 345568999986543 248899998874 87654332111 112345668888875432
Q ss_pred CCceEEEeCCCCc--eeecccCccCC--cceEEEEECCeEEEEeeCC----CcceEEEeCCCC--ceee
Q 017349 243 SPRGGVYDINKDT--WNLMSDGMKEG--WTGISIVLEGKLFVISEHG----DCPMKQYNPDDD--TWRY 301 (373)
Q Consensus 243 ~~~i~~yd~~~~~--W~~~~~~~~~~--~~~~~~~~~~~l~v~gg~~----~~~~~~yd~~~~--~W~~ 301 (373)
..++++|.++++ |+.-....... .....++.+++||+-.... ...+..||.+++ .|+.
T Consensus 130 -g~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 130 -ARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred -CEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 479999998885 86532212111 1222267788888753211 357888999876 4663
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=93.93 E-value=3 Score=38.07 Aligned_cols=121 Identities=14% Similarity=0.169 Sum_probs=68.7
Q ss_pred eeeeeEe-CCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEE-EECCEEEEEeCccCCCccCCceEE
Q 017349 171 FFASGNV-NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSA-VMGSKMYVTEGWTWPFMFSPRGGV 248 (373)
Q Consensus 171 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~-~~~~~lyv~gG~~~~~~~~~~i~~ 248 (373)
..++++. ++-|+..|-.+ ..+-+||..+.. .++.+|..-..-.+. +.++.-|++-+.++ ..+.+
T Consensus 350 ~ts~~fHpDgLifgtgt~d-------~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add-----~~V~l 415 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD-------GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD-----GSVKL 415 (506)
T ss_pred eEEeeEcCCceEEeccCCC-------ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC-----CeEEE
Confidence 4444444 56666655543 357788888776 566666633322232 23344444443331 35899
Q ss_pred EeCCCCc-eeecccCccCCcceEEEEE--CCeEEEEeeCCCcceEEEeCCCCceeeecCCCCC
Q 017349 249 YDINKDT-WNLMSDGMKEGWTGISIVL--EGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFP 308 (373)
Q Consensus 249 yd~~~~~-W~~~~~~~~~~~~~~~~~~--~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~ 308 (373)
||+...+ ...+. .+...--.+..+ -|+..+++|. ...++.|+.++++|+++...+..
T Consensus 416 wDLRKl~n~kt~~--l~~~~~v~s~~fD~SGt~L~~~g~-~l~Vy~~~k~~k~W~~~~~~~~~ 475 (506)
T KOG0289|consen 416 WDLRKLKNFKTIQ--LDEKKEVNSLSFDQSGTYLGIAGS-DLQVYICKKKTKSWTEIKELADH 475 (506)
T ss_pred EEehhhcccceee--ccccccceeEEEcCCCCeEEeecc-eeEEEEEecccccceeeehhhhc
Confidence 9997765 33332 222221112333 4667777765 56777888889999999865543
No 114
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.81 E-value=6.6 Score=37.74 Aligned_cols=114 Identities=17% Similarity=0.297 Sum_probs=65.3
Q ss_pred eeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCe--EEeccCCcc----c-cccccEEEEC-CEEEEEeCccCCCccCC
Q 017349 173 ASGNVNGKIMAVGGTGANINETMTAVECYDPESDT--WTTAAKLRM----G-LARYDSAVMG-SKMYVTEGWTWPFMFSP 244 (373)
Q Consensus 173 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~----~-~~~~~~~~~~-~~lyv~gG~~~~~~~~~ 244 (373)
+.++.++++|+.... ..++.+|..+++ |+.-...+. + ......++.+ +++|+... + .
T Consensus 56 sPvv~~g~vy~~~~~--------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-~------g 120 (488)
T cd00216 56 TPLVVDGDMYFTTSH--------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-D------G 120 (488)
T ss_pred CCEEECCEEEEeCCC--------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-C------C
Confidence 345678999986543 358899998775 876432221 0 0111234446 78886543 2 4
Q ss_pred ceEEEeCCCCc--eeecccCcc-CC--cceEEEEECCeEEEEeeC-------CCcceEEEeCCCC--ceee
Q 017349 245 RGGVYDINKDT--WNLMSDGMK-EG--WTGISIVLEGKLFVISEH-------GDCPMKQYNPDDD--TWRY 301 (373)
Q Consensus 245 ~i~~yd~~~~~--W~~~~~~~~-~~--~~~~~~~~~~~l~v~gg~-------~~~~~~~yd~~~~--~W~~ 301 (373)
.++++|.++++ |+.-..... .. ..+..++.++.+|+-... ....++.+|.+++ .|+.
T Consensus 121 ~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 121 RLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred eEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEe
Confidence 78999998775 875432110 11 112225667776653211 1347889999876 5775
No 115
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.76 E-value=3.8 Score=34.86 Aligned_cols=175 Identities=9% Similarity=0.096 Sum_probs=78.9
Q ss_pred eeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCccee
Q 017349 92 IQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSF 171 (373)
Q Consensus 92 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~ 171 (373)
..+.+||..+++.... +.... ....+.....++.+++.++. ...+.+||..+.+-...-. ......
T Consensus 73 ~~i~i~~~~~~~~~~~--~~~~~----~~i~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~-~~~~~i 138 (289)
T cd00200 73 KTIRLWDLETGECVRT--LTGHT----SYVSSVAFSPDGRILSSSSR-------DKTIKVWDVETGKCLTTLR-GHTDWV 138 (289)
T ss_pred CeEEEEEcCcccceEE--EeccC----CcEEEEEEcCCCCEEEEecC-------CCeEEEEECCCcEEEEEec-cCCCcE
Confidence 3577788776432111 11000 11222333324566666653 1268899987554222111 111112
Q ss_pred eeeeEeC-CeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCcccccc-ccEEEE-CCEEEEEeCccCCCccCCceEE
Q 017349 172 FASGNVN-GKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLAR-YDSAVM-GSKMYVTEGWTWPFMFSPRGGV 248 (373)
Q Consensus 172 ~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~-~~~~~~-~~~lyv~gG~~~~~~~~~~i~~ 248 (373)
..+.... +.+++.++.+ ..+.+||..+.+- +..+...... ...... +++.+++++.+ ..+..
T Consensus 139 ~~~~~~~~~~~l~~~~~~-------~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i 203 (289)
T cd00200 139 NSVAFSPDGTFVASSSQD-------GTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSSD------GTIKL 203 (289)
T ss_pred EEEEEcCcCCEEEEEcCC-------CcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecCC------CcEEE
Confidence 2222333 4454444422 3588888875432 1111111111 122222 44355555543 57889
Q ss_pred EeCCCCceeecccCccCCcceEEEEE-CCeEEEEeeCCCcceEEEeCCCC
Q 017349 249 YDINKDTWNLMSDGMKEGWTGISIVL-EGKLFVISEHGDCPMKQYNPDDD 297 (373)
Q Consensus 249 yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~l~v~gg~~~~~~~~yd~~~~ 297 (373)
||..+++-...-......... .... ++.+++.++ ....+..||..+.
T Consensus 204 ~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~-~~~~i~i~~~~~~ 251 (289)
T cd00200 204 WDLSTGKCLGTLRGHENGVNS-VAFSPDGYLLASGS-EDGTIRVWDLRTG 251 (289)
T ss_pred EECCCCceecchhhcCCceEE-EEEcCCCcEEEEEc-CCCcEEEEEcCCc
Confidence 999875433221111111111 1222 345555554 3568899998753
No 116
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.47 E-value=7.5 Score=37.34 Aligned_cols=113 Identities=11% Similarity=0.156 Sum_probs=63.3
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCCCC--ceeccCCCCC----cc-eeeeeeEeC-CeEEEEcCCCCCCCCcCceEEE
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRATTN--QWQLASPMLT----PR-SFFASGNVN-GKIMAVGGTGANINETMTAVEC 200 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~----~r-~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~ 200 (373)
++.||+.... ..++.+|..++ .|+.-...+. +. .....+..+ +++|+.... ..++.
T Consensus 61 ~g~vy~~~~~--------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~--------g~v~A 124 (488)
T cd00216 61 DGDMYFTTSH--------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFD--------GRLVA 124 (488)
T ss_pred CCEEEEeCCC--------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCC--------CeEEE
Confidence 8899986431 36899999887 4875332210 10 111234445 788864322 35899
Q ss_pred EeCCCCe--EEeccCCcc-cc--ccccEEEECCEEEEEeCccCCC---ccCCceEEEeCCCCc--eee
Q 017349 201 YDPESDT--WTTAAKLRM-GL--ARYDSAVMGSKMYVTEGWTWPF---MFSPRGGVYDINKDT--WNL 258 (373)
Q Consensus 201 yd~~t~~--W~~~~~~~~-~~--~~~~~~~~~~~lyv~gG~~~~~---~~~~~i~~yd~~~~~--W~~ 258 (373)
+|.+|++ |+.-...+. .. ...+.++.++.+|+.. ..... .....++++|.++++ |+.
T Consensus 125 lD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~-~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 125 LDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGS-SGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred EECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEec-cccccccCCCCcEEEEEECCCCceeeEe
Confidence 9998774 876533221 00 1223455577766532 21111 123578999998875 864
No 117
>PLN00181 protein SPA1-RELATED; Provisional
Probab=93.38 E-value=11 Score=38.83 Aligned_cols=140 Identities=9% Similarity=0.049 Sum_probs=70.1
Q ss_pred CEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEe--CCeEEEEcCCCCCCCCcCceEEEEeCCCCe
Q 017349 130 GKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV--NGKIMAVGGTGANINETMTAVECYDPESDT 207 (373)
Q Consensus 130 ~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~ 207 (373)
+..++.++.+ ..+.+||..+++-...-.. ....-.++... ++.+++.||.+ ..+.+||..+..
T Consensus 545 ~~~las~~~D-------g~v~lWd~~~~~~~~~~~~-H~~~V~~l~~~p~~~~~L~Sgs~D-------g~v~iWd~~~~~ 609 (793)
T PLN00181 545 KSQVASSNFE-------GVVQVWDVARSQLVTEMKE-HEKRVWSIDYSSADPTLLASGSDD-------GSVKLWSINQGV 609 (793)
T ss_pred CCEEEEEeCC-------CeEEEEECCCCeEEEEecC-CCCCEEEEEEcCCCCCEEEEEcCC-------CEEEEEECCCCc
Confidence 4455555542 2688889877643221111 11112233332 45677777765 358888887653
Q ss_pred E-EeccCCccccccccEEE--ECCEEEEEeCccCCCccCCceEEEeCCCCc--eeecccCccCCcceEEEEECCeEEEEe
Q 017349 208 W-TTAAKLRMGLARYDSAV--MGSKMYVTEGWTWPFMFSPRGGVYDINKDT--WNLMSDGMKEGWTGISIVLEGKLFVIS 282 (373)
Q Consensus 208 W-~~~~~~~~~~~~~~~~~--~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~l~v~g 282 (373)
- ..+. .......... .++.++++|+.+ ..+..||..+.. ...+.. ... ........++..++.+
T Consensus 610 ~~~~~~---~~~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~~-h~~-~V~~v~f~~~~~lvs~ 678 (793)
T PLN00181 610 SIGTIK---TKANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMIG-HSK-TVSYVRFVDSSTLVSS 678 (793)
T ss_pred EEEEEe---cCCCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEecC-CCC-CEEEEEEeCCCEEEEE
Confidence 2 1121 1101111111 146777777765 579999997643 111111 111 1111122366666666
Q ss_pred eCCCcceEEEeCCC
Q 017349 283 EHGDCPMKQYNPDD 296 (373)
Q Consensus 283 g~~~~~~~~yd~~~ 296 (373)
+. ...+..||...
T Consensus 679 s~-D~~ikiWd~~~ 691 (793)
T PLN00181 679 ST-DNTLKLWDLSM 691 (793)
T ss_pred EC-CCEEEEEeCCC
Confidence 54 45788888764
No 118
>PRK04792 tolB translocation protein TolB; Provisional
Probab=93.26 E-value=7.7 Score=36.81 Aligned_cols=199 Identities=10% Similarity=-0.032 Sum_probs=98.0
Q ss_pred CCEEEEEEecCCCCceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCC
Q 017349 77 LPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATT 156 (373)
Q Consensus 77 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t 156 (373)
+.+|++.... ....+++.+|+.+.+-..+...+.. ....+....+..|++....+ ....++++|..+
T Consensus 229 G~~La~~s~~--~g~~~L~~~dl~tg~~~~lt~~~g~------~~~~~wSPDG~~La~~~~~~-----g~~~Iy~~dl~t 295 (448)
T PRK04792 229 GRKLAYVSFE--NRKAEIFVQDIYTQVREKVTSFPGI------NGAPRFSPDGKKLALVLSKD-----GQPEIYVVDIAT 295 (448)
T ss_pred CCEEEEEEec--CCCcEEEEEECCCCCeEEecCCCCC------cCCeeECCCCCEEEEEEeCC-----CCeEEEEEECCC
Confidence 4445444322 2345688899888776666544411 11112222244565543321 234799999999
Q ss_pred CceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCcccccccc-EEEECCEEEEEeC
Q 017349 157 NQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYD-SAVMGSKMYVTEG 235 (373)
Q Consensus 157 ~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~-~~~~~~~lyv~gG 235 (373)
++.+++...............+..|++..... ....++.+|..+++++.+..- ...... ...-+|+.+++..
T Consensus 296 g~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~-----g~~~Iy~~dl~~g~~~~Lt~~--g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 296 KALTRITRHRAIDTEPSWHPDGKSLIFTSERG-----GKPQIYRVNLASGKVSRLTFE--GEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred CCeEECccCCCCccceEECCCCCEEEEEECCC-----CCceEEEEECCCCCEEEEecC--CCCCcCeeECCCCCEEEEEE
Confidence 98877654221111111111233455443222 125799999999988877421 111112 2222554443433
Q ss_pred ccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEECCeEEEEee-CC-CcceEEEeCCCCceee
Q 017349 236 WTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISE-HG-DCPMKQYNPDDDTWRY 301 (373)
Q Consensus 236 ~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg-~~-~~~~~~yd~~~~~W~~ 301 (373)
... ....++.+|+.++..+.+.... ... .....-+|+.+++.. .+ ...++.+|.+ +.+..
T Consensus 369 ~~~---g~~~I~~~dl~~g~~~~lt~~~-~d~-~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~ 430 (448)
T PRK04792 369 RTN---GKFNIARQDLETGAMQVLTSTR-LDE-SPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKA 430 (448)
T ss_pred ecC---CceEEEEEECCCCCeEEccCCC-CCC-CceECCCCCEEEEEEecCCceEEEEEECC-CCceE
Confidence 221 1246889999998877664321 111 112223454433322 21 2357777764 34443
No 119
>PRK05137 tolB translocation protein TolB; Provisional
Probab=93.17 E-value=7.8 Score=36.59 Aligned_cols=188 Identities=9% Similarity=-0.020 Sum_probs=92.4
Q ss_pred ceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCC-EEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcc
Q 017349 91 RIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQG-KLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPR 169 (373)
Q Consensus 91 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r 169 (373)
...++.+|+.+.....+...+... . ......++ +|++.... ....++|++|..++..+++...+...
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g~~------~-~~~~SPDG~~la~~~~~-----~g~~~Iy~~d~~~~~~~~Lt~~~~~~ 292 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPGMT------F-APRFSPDGRKVVMSLSQ-----GGNTDIYTMDLRSGTTTRLTDSPAID 292 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCCcc------c-CcEECCCCCEEEEEEec-----CCCceEEEEECCCCceEEccCCCCcc
Confidence 356888898888777765544111 1 11222244 45444332 12347999999988777665432111
Q ss_pred eeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEECCE-EEEEeCccCCCccCCceEE
Q 017349 170 SFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSK-MYVTEGWTWPFMFSPRGGV 248 (373)
Q Consensus 170 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~-lyv~gG~~~~~~~~~~i~~ 248 (373)
........+.+|+...... ....++++|..+...+.+..... ........-+|+ |++..... ....++.
T Consensus 293 ~~~~~spDG~~i~f~s~~~-----g~~~Iy~~d~~g~~~~~lt~~~~-~~~~~~~SpdG~~ia~~~~~~----~~~~i~~ 362 (435)
T PRK05137 293 TSPSYSPDGSQIVFESDRS-----GSPQLYVMNADGSNPRRISFGGG-RYSTPVWSPRGDLIAFTKQGG----GQFSIGV 362 (435)
T ss_pred CceeEcCCCCEEEEEECCC-----CCCeEEEEECCCCCeEEeecCCC-cccCeEECCCCCEEEEEEcCC----CceEEEE
Confidence 1111111233454432221 12468999988877776643211 111111222454 44433211 1246888
Q ss_pred EeCCCCceeecccCccCCcceEEEEECCeEEEEeeC-C-C---cceEEEeCCCCceeee
Q 017349 249 YDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEH-G-D---CPMKQYNPDDDTWRYV 302 (373)
Q Consensus 249 yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~-~-~---~~~~~yd~~~~~W~~~ 302 (373)
+|+.++..+.+.... ........-+|+.+++... . . ..++.+|...+.-..+
T Consensus 363 ~d~~~~~~~~lt~~~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l 419 (435)
T PRK05137 363 MKPDGSGERILTSGF--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREV 419 (435)
T ss_pred EECCCCceEeccCCC--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEc
Confidence 998776655543311 1111122235554444222 1 1 3688888876655544
No 120
>PRK04922 tolB translocation protein TolB; Provisional
Probab=92.61 E-value=9.3 Score=36.05 Aligned_cols=181 Identities=12% Similarity=0.043 Sum_probs=92.1
Q ss_pred ceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCC-EEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcc
Q 017349 91 RIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQG-KLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPR 169 (373)
Q Consensus 91 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r 169 (373)
...++++|..+++-..+...+.. ........++ +|++..... ...+++++|..++..+++..-....
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~-------~~~~~~SpDG~~l~~~~s~~-----g~~~Iy~~d~~~g~~~~lt~~~~~~ 294 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGI-------NGAPSFSPDGRRLALTLSRD-----GNPEIYVMDLGSRQLTRLTNHFGID 294 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCC-------ccCceECCCCCEEEEEEeCC-----CCceEEEEECCCCCeEECccCCCCc
Confidence 45688889888877666554411 1112222244 555443221 1247999999988766654322111
Q ss_pred eeeeeeEeCC-eEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEE-ECC-EEEEEeCccCCCccCCce
Q 017349 170 SFFASGNVNG-KIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV-MGS-KMYVTEGWTWPFMFSPRG 246 (373)
Q Consensus 170 ~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~~-~lyv~gG~~~~~~~~~~i 246 (373)
.... ..-++ +|+...... ....++.+|..+++.+.+..- ......... -+| .|++..+.. ....+
T Consensus 295 ~~~~-~spDG~~l~f~sd~~-----g~~~iy~~dl~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~~~~~----~~~~I 362 (433)
T PRK04922 295 TEPT-WAPDGKSIYFTSDRG-----GRPQIYRVAASGGSAERLTFQ--GNYNARASVSPDGKKIAMVHGSG----GQYRI 362 (433)
T ss_pred cceE-ECCCCCEEEEEECCC-----CCceEEEEECCCCCeEEeecC--CCCccCEEECCCCCEEEEEECCC----CceeE
Confidence 1111 11234 454443222 124688999988887776421 112222222 244 455443321 12378
Q ss_pred EEEeCCCCceeecccCccCCcceEEEEECCeEEEEeeCC--CcceEEEeCCCC
Q 017349 247 GVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHG--DCPMKQYNPDDD 297 (373)
Q Consensus 247 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~--~~~~~~yd~~~~ 297 (373)
+.+|+.++..+.+.... ........-+|+.+++.... ...++.+|.+.+
T Consensus 363 ~v~d~~~g~~~~Lt~~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 363 AVMDLSTGSVRTLTPGS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EEEECCCCCeEECCCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 99999988877665311 11112233456544443321 346777877554
No 121
>smart00284 OLF Olfactomedin-like domains.
Probab=91.84 E-value=7.7 Score=33.41 Aligned_cols=195 Identities=15% Similarity=0.145 Sum_probs=99.7
Q ss_pred CCEEEEEEecCCCCceeEEEe----eCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEE
Q 017349 77 LPYLFIFSFHKPTARIQWQAL----DPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMY 152 (373)
Q Consensus 77 ~~~l~~~gg~~~~~~~~~~~~----d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~y 152 (373)
++.+++..+.. .....+..| |....+....-.+|.+- .+-+.++. +|.+|.-- .....+.+|
T Consensus 34 ~~~~wv~~~~~-~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~----~GtG~VVY--ngslYY~~-------~~s~~iiKy 99 (255)
T smart00284 34 KSLYWYMPLNT-RVLRSVREYSSMSDFQMGKNPTDHPLPHAG----QGTGVVVY--NGSLYFNK-------FNSHDICRF 99 (255)
T ss_pred CceEEEEcccc-CCCcEEEEecCHHHHhccCCceEEECCCcc----ccccEEEE--CceEEEEe-------cCCccEEEE
Confidence 46777764422 122334444 23344443333455221 44455555 88888743 234689999
Q ss_pred eCCCCceeccCCCCCc----c--------eeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCC----eEEeccCCcc
Q 017349 153 RATTNQWQLASPMLTP----R--------SFFASGNVNGKIMAVGGTGANINETMTAVECYDPESD----TWTTAAKLRM 216 (373)
Q Consensus 153 d~~t~~W~~~~~~~~~----r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~----~W~~~~~~~~ 216 (373)
|..+++-.....+|.+ + ...-.++..+-|+++=... .....--+-..||.+- +|.. ..+.
T Consensus 100 dL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~--~~~g~ivvSkLnp~tL~ve~tW~T--~~~k 175 (255)
T smart00284 100 DLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATE--QNAGKIVISKLNPATLTIENTWIT--TYNK 175 (255)
T ss_pred ECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEecc--CCCCCEEEEeeCcccceEEEEEEc--CCCc
Confidence 9999975433333321 1 1223445566677774332 1111112335566654 4654 2222
Q ss_pred ccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEE-EE---ECCeEEEEeeCCCcceEEE
Q 017349 217 GLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGIS-IV---LEGKLFVISEHGDCPMKQY 292 (373)
Q Consensus 217 ~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~-~~---~~~~l~v~gg~~~~~~~~y 292 (373)
. ....+.++=|.||++-... .......++||+.+++=..+..+.+.+....+ +- .+.+||+.. ...+..|
T Consensus 176 ~-sa~naFmvCGvLY~~~s~~--~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd---ng~~l~Y 249 (255)
T smart00284 176 R-SASNAFMICGILYVTRSLG--SKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWN---NGHLVHY 249 (255)
T ss_pred c-cccccEEEeeEEEEEccCC--CCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEe---CCeEEEE
Confidence 2 2224556678999995322 12234568999998764333333333332222 22 367888875 3366677
Q ss_pred eCC
Q 017349 293 NPD 295 (373)
Q Consensus 293 d~~ 295 (373)
|+.
T Consensus 250 ~v~ 252 (255)
T smart00284 250 DIA 252 (255)
T ss_pred EEE
Confidence 653
No 122
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=91.79 E-value=4 Score=32.63 Aligned_cols=82 Identities=7% Similarity=-0.021 Sum_probs=50.8
Q ss_pred EEECCEEEEEeCccCCCccCCceEEEeCCCCce-eecccCccCC----cceEEEEECCeEEEEeeCC---CcceEEEe--
Q 017349 224 AVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTW-NLMSDGMKEG----WTGISIVLEGKLFVISEHG---DCPMKQYN-- 293 (373)
Q Consensus 224 ~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W-~~~~~~~~~~----~~~~~~~~~~~l~v~gg~~---~~~~~~yd-- 293 (373)
+.++|.+|.++....... ...|.+||+.++++ +.++.|.... .....++.+++|.++-... ...||+.+
T Consensus 2 V~vnG~~hW~~~~~~~~~-~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE-KDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred EEECCEEEeeEEecCCCC-ceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 578999999986542211 11699999999999 6665433222 1111234478888885322 35777765
Q ss_pred -CCCCceeeecCCC
Q 017349 294 -PDDDTWRYVGGDK 306 (373)
Q Consensus 294 -~~~~~W~~~~~~~ 306 (373)
....+|+++-..+
T Consensus 81 ~~~~~SWtK~~~i~ 94 (164)
T PF07734_consen 81 GYGKESWTKLFTID 94 (164)
T ss_pred ccCcceEEEEEEEe
Confidence 2367899875433
No 123
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=91.52 E-value=9.8 Score=33.98 Aligned_cols=252 Identities=15% Similarity=0.168 Sum_probs=124.7
Q ss_pred CCCCEEEEEEecCCCCceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCC-EEEEEcCccCCCCCCcceeEEEe
Q 017349 75 LSLPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQG-KLFVLGGMRSDTETPMQSTIMYR 153 (373)
Q Consensus 75 ~~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~yd 153 (373)
..+..||+....+.....-.+.+|+..++-+.+...+.+. .......+..++ .||+. -+ ....+-+|-
T Consensus 49 ~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g----~~p~yvsvd~~g~~vf~A-nY------~~g~v~v~p 117 (346)
T COG2706 49 PDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPG----SPPCYVSVDEDGRFVFVA-NY------HSGSVSVYP 117 (346)
T ss_pred CCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCC----CCCeEEEECCCCCEEEEE-Ec------cCceEEEEE
Confidence 3456789887765555556677788878877776554332 111333333344 44433 22 234566666
Q ss_pred CCCC--ceec------cCCCCCcc-----eeeeeeEeCC-eEEEEcCCCCCCCCcCceEEEEeCCCCeEEecc--CCccc
Q 017349 154 ATTN--QWQL------ASPMLTPR-----SFFASGNVNG-KIMAVGGTGANINETMTAVECYDPESDTWTTAA--KLRMG 217 (373)
Q Consensus 154 ~~t~--~W~~------~~~~~~~r-----~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~ 217 (373)
...+ -|.. ...-|.+| ..++...-++ .+++.. --...+..|+...+.-.... .++.
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D-------LG~Dri~~y~~~dg~L~~~~~~~v~~- 189 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD-------LGTDRIFLYDLDDGKLTPADPAEVKP- 189 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee-------cCCceEEEEEcccCccccccccccCC-
Confidence 5443 1222 12223344 2222223344 444331 12456888888866544432 2221
Q ss_pred cccc-cEEEE-CCE-EEEEeCccCCCccCCceEEEeCCCCceeeccc--CccCC----cceEE--EEECCeEEEEeeCCC
Q 017349 218 LARY-DSAVM-GSK-MYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD--GMKEG----WTGIS--IVLEGKLFVISEHGD 286 (373)
Q Consensus 218 ~~~~-~~~~~-~~~-lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~--~~~~~----~~~~~--~~~~~~l~v~gg~~~ 286 (373)
-.++ ..++. +++ .|++.-.++ +-.++.||...++.++++. .+|.. ...++ +.-+|+.+.+...+.
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~s----tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~ 265 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNS----TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH 265 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCC----EEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC
Confidence 1221 13333 444 788876541 1245556766688887754 23322 12222 334666554444345
Q ss_pred cceEEE--eCCCCceeeecCCCCCCcccccceEEEEeCCEEEEEeCCceeeeeEEEEeecCCcccceEEe
Q 017349 287 CPMKQY--NPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEEQNGGISAEWKVM 354 (373)
Q Consensus 287 ~~~~~y--d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~W~~~ 354 (373)
+.|.+| |+..++-..++..+.- ...-+.+-+...++.|++.+-..++ ..++. -|.++.+=.++
T Consensus 266 dsI~~f~V~~~~g~L~~~~~~~te-g~~PR~F~i~~~g~~Liaa~q~sd~--i~vf~--~d~~TG~L~~~ 330 (346)
T COG2706 266 DSIAVFSVDPDGGKLELVGITPTE-GQFPRDFNINPSGRFLIAANQKSDN--ITVFE--RDKETGRLTLL 330 (346)
T ss_pred CeEEEEEEcCCCCEEEEEEEeccC-CcCCccceeCCCCCEEEEEccCCCc--EEEEE--EcCCCceEEec
Confidence 577766 5555655554432222 1123456566666666666654333 45555 56666654443
No 124
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=91.46 E-value=2.4 Score=33.93 Aligned_cols=82 Identities=9% Similarity=0.120 Sum_probs=50.8
Q ss_pred EEECCeEEEEeeCCCc----ceEEEeCCCCce-eeecCCCCCCcccccceEEE-EeCCEEEEEeCCceeeeeEEEEee-c
Q 017349 272 IVLEGKLFVISEHGDC----PMKQYNPDDDTW-RYVGGDKFPCEVMHRPFAVN-GVEGKIYVVSSGLNVAIGRVYEEQ-N 344 (373)
Q Consensus 272 ~~~~~~l~v~gg~~~~----~~~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~GG~~~~~~~~~~~~~-~ 344 (373)
+.++|.+|-++..... .|..||..+.++ ..++ +|...........+. ..+++|-++--.......+++.++ +
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~-lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLP-LPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEEC-CCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 5689999988765422 589999999999 5553 232211112233442 336788888543333346677744 5
Q ss_pred CCcccceEEe
Q 017349 345 GGISAEWKVM 354 (373)
Q Consensus 345 d~~~~~W~~~ 354 (373)
+.+..+|+++
T Consensus 81 ~~~~~SWtK~ 90 (164)
T PF07734_consen 81 GYGKESWTKL 90 (164)
T ss_pred ccCcceEEEE
Confidence 5559999974
No 125
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=91.42 E-value=9.9 Score=33.82 Aligned_cols=224 Identities=12% Similarity=0.192 Sum_probs=93.2
Q ss_pred CCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCC-CCc-cee-eeeeE
Q 017349 100 RSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPM-LTP-RSF-FASGN 176 (373)
Q Consensus 100 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~-~~~-r~~-~~~~~ 176 (373)
..+.|..+. +|... .-+.+..+ ..++-|++|-. ..+++=+-.-.+|+..... ..+ ... .++..
T Consensus 4 ~~~~W~~v~-l~t~~----~l~dV~F~-d~~~G~~VG~~--------g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f 69 (302)
T PF14870_consen 4 SGNSWQQVS-LPTDK----PLLDVAFV-DPNHGWAVGAY--------GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISF 69 (302)
T ss_dssp SS--EEEEE--S-SS-----EEEEEES-SSS-EEEEETT--------TEEEEESSTTSS-EE-----S-----EEEEEEE
T ss_pred cCCCcEEee-cCCCC----ceEEEEEe-cCCEEEEEecC--------CEEEEECCCCccccccccCCCccceeeEEEEEe
Confidence 356788774 33222 33444444 36788888753 1344444444589876532 222 222 23444
Q ss_pred eCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEecc-CCccccccccEE-EECCEEEEEeCccCCCccCCceEEEeCCCC
Q 017349 177 VNGKIMAVGGTGANINETMTAVECYDPESDTWTTAA-KLRMGLARYDSA-VMGSKMYVTEGWTWPFMFSPRGGVYDINKD 254 (373)
Q Consensus 177 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~-~~~~~~~~~~~~-~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~ 254 (373)
.++..|++|... -+..-.=.-.+|++++ +.+.+....... .-++.+.+++.. ..+++=.-.-.
T Consensus 70 ~~~~g~ivG~~g--------~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~ 134 (302)
T PF14870_consen 70 DGNEGWIVGEPG--------LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-------GAIYRTTDGGK 134 (302)
T ss_dssp ETTEEEEEEETT--------EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT---------EEEESSTTS
T ss_pred cCCceEEEcCCc--------eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCC
Confidence 578888876432 1222222456899985 222222223333 335666666543 24555555566
Q ss_pred ceeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEeCCCCceeeecCCCCCCcccccceEE-EEeCCEEEEEeCCce
Q 017349 255 TWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAV-NGVEGKIYVVSSGLN 333 (373)
Q Consensus 255 ~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~GG~~~ 333 (373)
+|+.+..............-+|++++++.. ..-+...|+....|+..... .. ++-.++ ..-++.|+++.-+..
T Consensus 135 tW~~~~~~~~gs~~~~~r~~dG~~vavs~~-G~~~~s~~~G~~~w~~~~r~-~~----~riq~~gf~~~~~lw~~~~Gg~ 208 (302)
T PF14870_consen 135 TWQAVVSETSGSINDITRSSDGRYVAVSSR-GNFYSSWDPGQTTWQPHNRN-SS----RRIQSMGFSPDGNLWMLARGGQ 208 (302)
T ss_dssp SEEEEE-S----EEEEEE-TTS-EEEEETT-SSEEEEE-TT-SS-EEEE---SS----S-EEEEEE-TTS-EEEEETTTE
T ss_pred CeeEcccCCcceeEeEEECCCCcEEEEECc-ccEEEEecCCCccceEEccC-cc----ceehhceecCCCCEEEEeCCcE
Confidence 899876533322222223345665556543 34455778888889988742 22 333333 445678877764322
Q ss_pred eeeeEEEEeecCCcccceEEecCCCCcCcc
Q 017349 334 VAIGRVYEEQNGGISAEWKVMTAPRAFKDL 363 (373)
Q Consensus 334 ~~~~~~~~~~~d~~~~~W~~~~~p~~~~~~ 363 (373)
- ...+ ...+...|.+-..|....++
T Consensus 209 ~---~~s~--~~~~~~~w~~~~~~~~~~~~ 233 (302)
T PF14870_consen 209 I---QFSD--DPDDGETWSEPIIPIKTNGY 233 (302)
T ss_dssp E---EEEE---TTEEEEE---B-TTSS--S
T ss_pred E---EEcc--CCCCccccccccCCcccCce
Confidence 1 1111 33555667764444444443
No 126
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.22 E-value=7.2 Score=37.86 Aligned_cols=122 Identities=19% Similarity=0.221 Sum_probs=67.9
Q ss_pred cEEEECCEEEEEeCccCCCccCCceEEEeCCCCc--eeecccCccCC--------cceEEEEECCeEEEEeeCCCcceEE
Q 017349 222 DSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT--WNLMSDGMKEG--------WTGISIVLEGKLFVISEHGDCPMKQ 291 (373)
Q Consensus 222 ~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~--W~~~~~~~~~~--------~~~~~~~~~~~l~v~gg~~~~~~~~ 291 (373)
+.++.+++||+.... ..++++|.++++ |+.-....... .....++.+++||+... ...+..
T Consensus 64 tPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~--dg~l~A 134 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL--DARLVA 134 (527)
T ss_pred CCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC--CCEEEE
Confidence 345679999986543 368999998875 87543211000 01112566888887543 348999
Q ss_pred EeCCCC--ceeeecCCCCCCcccccceEEEEeCCEEEEEeCCce-eeeeEEEEeecCCcccceEEe
Q 017349 292 YNPDDD--TWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLN-VAIGRVYEEQNGGISAEWKVM 354 (373)
Q Consensus 292 yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~~~-~~~~~~~~~~~d~~~~~W~~~ 354 (373)
+|.+++ .|+.-.. ... .......+-++.+++||+-..... ...+.++-......+..|+.-
T Consensus 135 LDa~TGk~~W~~~~~-~~~-~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 135 LDAKTGKVVWSKKNG-DYK-AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred EECCCCCEEeecccc-ccc-ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 999876 4664321 111 000112334566887776433211 123455554456777888843
No 127
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.22 E-value=19 Score=36.67 Aligned_cols=114 Identities=13% Similarity=0.172 Sum_probs=59.9
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCCCC--ceeccCCCCCcc-e----eee------------------eeEeCCeEEE
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRATTN--QWQLASPMLTPR-S----FFA------------------SGNVNGKIMA 183 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~r-~----~~~------------------~~~~~~~iyv 183 (373)
++.||+... .+.++.+|..|+ .|+.-+..+..- . .-+ .+.++++||+
T Consensus 194 gg~lYv~t~--------~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~ 265 (764)
T TIGR03074 194 GDTLYLCTP--------HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIIL 265 (764)
T ss_pred CCEEEEECC--------CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEE
Confidence 899999743 236888888877 477554332110 0 001 1123446654
Q ss_pred EcCCCCCCCCcCceEEEEeCCCCe--EEe-----------ccCCcccc--ccccEEEECCEEEEEeCccCC---CccCCc
Q 017349 184 VGGTGANINETMTAVECYDPESDT--WTT-----------AAKLRMGL--ARYDSAVMGSKMYVTEGWTWP---FMFSPR 245 (373)
Q Consensus 184 ~GG~~~~~~~~~~~~~~yd~~t~~--W~~-----------~~~~~~~~--~~~~~~~~~~~lyv~gG~~~~---~~~~~~ 245 (373)
- ..+ ..++.+|.+|++ |+. +.+.+... ...+-++.+++||+-+...+. ......
T Consensus 266 ~-T~D-------g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 266 P-TSD-------ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred e-cCC-------CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 3 222 246777777664 542 11222111 123346678887764321111 122357
Q ss_pred eEEEeCCCCc--eee
Q 017349 246 GGVYDINKDT--WNL 258 (373)
Q Consensus 246 i~~yd~~~~~--W~~ 258 (373)
+..||.+|++ |+.
T Consensus 338 I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 338 IRAFDVNTGALVWAW 352 (764)
T ss_pred EEEEECCCCcEeeEE
Confidence 8999999985 764
No 128
>PRK04043 tolB translocation protein TolB; Provisional
Probab=91.22 E-value=13 Score=34.88 Aligned_cols=190 Identities=8% Similarity=-0.035 Sum_probs=102.6
Q ss_pred ceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCC-EEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcc
Q 017349 91 RIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQG-KLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPR 169 (373)
Q Consensus 91 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r 169 (373)
..+++++|+.+++=..+...+ ..........++ +|.+.-... ...++|.+|..++.++++...+..-
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~-------g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~dl~~g~~~~LT~~~~~d 279 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQ-------GMLVVSDVSKDGSKLLLTMAPK-----GQPDIYLYDTNTKTLTQITNYPGID 279 (419)
T ss_pred CCEEEEEECCCCcEEEEecCC-------CcEEeeEECCCCCEEEEEEccC-----CCcEEEEEECCCCcEEEcccCCCcc
Confidence 457899999888777765433 111222233344 565544331 2358999999999988876543211
Q ss_pred eeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEECCEEEEEeCccCCC---ccCCce
Q 017349 170 SFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPF---MFSPRG 246 (373)
Q Consensus 170 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~---~~~~~i 246 (373)
........+.+|+...... ....++++|..+++.+++..-.. .. ....-+|+..++....... .....+
T Consensus 280 ~~p~~SPDG~~I~F~Sdr~-----g~~~Iy~~dl~~g~~~rlt~~g~--~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I 351 (419)
T PRK04043 280 VNGNFVEDDKRIVFVSDRL-----GYPNIFMKKLNSGSVEQVVFHGK--NN-SSVSTYKNYIVYSSRETNNEFGKNTFNL 351 (419)
T ss_pred CccEECCCCCEEEEEECCC-----CCceEEEEECCCCCeEeCccCCC--cC-ceECCCCCEEEEEEcCCCcccCCCCcEE
Confidence 1112122345677765432 23579999999998877643211 22 2233355533333222111 123578
Q ss_pred EEEeCCCCceeecccCccCCcceEEEEECCe-EEEEeeCC-CcceEEEeCCCCceeee
Q 017349 247 GVYDINKDTWNLMSDGMKEGWTGISIVLEGK-LFVISEHG-DCPMKQYNPDDDTWRYV 302 (373)
Q Consensus 247 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-l~v~gg~~-~~~~~~yd~~~~~W~~~ 302 (373)
+.+|++++.++.+... .. .......-+|+ |+.....+ ...+..++.+.+.=..+
T Consensus 352 ~v~d~~~g~~~~LT~~-~~-~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 352 YLISTNSDYIRRLTAN-GV-NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred EEEECCCCCeEECCCC-CC-cCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEe
Confidence 9999999998887652 11 11122333555 44433222 34577777766543334
No 129
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=90.94 E-value=12 Score=33.76 Aligned_cols=245 Identities=9% Similarity=0.047 Sum_probs=108.9
Q ss_pred CCCEEEEEEecCCCCceeEEEeeCC-CCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeC
Q 017349 76 SLPYLFIFSFHKPTARIQWQALDPR-SGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRA 154 (373)
Q Consensus 76 ~~~~l~~~gg~~~~~~~~~~~~d~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~ 154 (373)
.+..||+.+.. ...+..|+.. +.++..+...+.+. .....+....++.+|+..-. .+.+.+||.
T Consensus 45 d~~~lyv~~~~----~~~i~~~~~~~~g~l~~~~~~~~~~----~p~~i~~~~~g~~l~v~~~~-------~~~v~v~~~ 109 (330)
T PRK11028 45 DKRHLYVGVRP----EFRVLSYRIADDGALTFAAESPLPG----SPTHISTDHQGRFLFSASYN-------ANCVSVSPL 109 (330)
T ss_pred CCCEEEEEECC----CCcEEEEEECCCCceEEeeeecCCC----CceEEEECCCCCEEEEEEcC-------CCeEEEEEE
Confidence 45677775431 2345556654 45565444333221 11233333334567765321 246777877
Q ss_pred CCCc--eeccCCCCCcceeeeeeEe--CCeEEEEcCCCCCCCCcCceEEEEeCCCCe-EEecc----CCccccccccEEE
Q 017349 155 TTNQ--WQLASPMLTPRSFFASGNV--NGKIMAVGGTGANINETMTAVECYDPESDT-WTTAA----KLRMGLARYDSAV 225 (373)
Q Consensus 155 ~t~~--W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~-W~~~~----~~~~~~~~~~~~~ 225 (373)
.++. ...+..++.....|.++.. +..+|+..-. .+.+.+||..++. ..... ..+....-..++.
T Consensus 110 ~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~-------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~ 182 (330)
T PRK11028 110 DKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK-------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF 182 (330)
T ss_pred CCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC-------CCEEEEEEECCCCcccccCCCceecCCCCCCceEEE
Confidence 5431 1222222222223444333 3456654322 2468899987632 21110 1111111122333
Q ss_pred E-CC-EEEEEeCccCCCccCCceEEEeCC--CCceeeccc--Cc----cCCcceEEEE--ECC-eEEEEeeCCCcceEEE
Q 017349 226 M-GS-KMYVTEGWTWPFMFSPRGGVYDIN--KDTWNLMSD--GM----KEGWTGISIV--LEG-KLFVISEHGDCPMKQY 292 (373)
Q Consensus 226 ~-~~-~lyv~gG~~~~~~~~~~i~~yd~~--~~~W~~~~~--~~----~~~~~~~~~~--~~~-~l~v~gg~~~~~~~~y 292 (373)
. ++ .+|+..... +.+.+||.. +++.+.+.. .. ..++....+. -++ .+|+.. ...+.+.+|
T Consensus 183 ~pdg~~lyv~~~~~------~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~-~~~~~I~v~ 255 (330)
T PRK11028 183 HPNQQYAYCVNELN------SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD-RTASLISVF 255 (330)
T ss_pred CCCCCEEEEEecCC------CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec-CCCCeEEEE
Confidence 3 33 577765433 577788776 445543321 11 1122222222 244 466653 335577777
Q ss_pred eCC--CCceeeecCCCCCCcccccceEEEEeCCEEEEEeCCceeeeeEEEEeecCCcccceEEec
Q 017349 293 NPD--DDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEEQNGGISAEWKVMT 355 (373)
Q Consensus 293 d~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~W~~~~ 355 (373)
+.+ ...++.+...+.. .......+...+..||+.+... ....++. .|.++..++.+.
T Consensus 256 ~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~--~~v~v~~--~~~~~g~l~~~~ 314 (330)
T PRK11028 256 SVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKS--HHISVYE--IDGETGLLTELG 314 (330)
T ss_pred EEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccC--CcEEEEE--EcCCCCcEEEcc
Confidence 664 3455555432221 0112233333455677765421 2223333 555556666553
No 130
>PTZ00421 coronin; Provisional
Probab=90.86 E-value=16 Score=35.17 Aligned_cols=152 Identities=9% Similarity=0.112 Sum_probs=73.6
Q ss_pred CEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCC-cceeeeee-EeCCeEEEEcCCCCCCCCcCceEEEEeCCCCe
Q 017349 130 GKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLT-PRSFFASG-NVNGKIMAVGGTGANINETMTAVECYDPESDT 207 (373)
Q Consensus 130 ~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~ 207 (373)
+.+++.|+.+ ..+.+||..+++-.. .+.. ...-..+. ..++.+++.|+.+ ..+.+||+.+++
T Consensus 138 ~~iLaSgs~D-------gtVrIWDl~tg~~~~--~l~~h~~~V~sla~spdG~lLatgs~D-------g~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGAD-------MVVNVWDVERGKAVE--VIKCHSDQITSLEWNLDGSLLCTTSKD-------KKLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCC-------CEEEEEECCCCeEEE--EEcCCCCceEEEEEECCCCEEEEecCC-------CEEEEEECCCCc
Confidence 4577777652 268899988764221 1111 11111222 2256777777765 458899998765
Q ss_pred EE-eccCCccccccccEEEE-CCEEEEEeCccCCCccCCceEEEeCCCCce--eecccCccCCcceEEEE--ECCeEEEE
Q 017349 208 WT-TAAKLRMGLARYDSAVM-GSKMYVTEGWTWPFMFSPRGGVYDINKDTW--NLMSDGMKEGWTGISIV--LEGKLFVI 281 (373)
Q Consensus 208 W~-~~~~~~~~~~~~~~~~~-~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W--~~~~~~~~~~~~~~~~~--~~~~l~v~ 281 (373)
-. .+..-..... ..+... ++..++..|.+. .....+..||+.+..- .... ........... .+++++++
T Consensus 202 ~v~tl~~H~~~~~-~~~~w~~~~~~ivt~G~s~--s~Dr~VklWDlr~~~~p~~~~~--~d~~~~~~~~~~d~d~~~L~l 276 (493)
T PTZ00421 202 IVSSVEAHASAKS-QRCLWAKRKDLIITLGCSK--SQQRQIMLWDTRKMASPYSTVD--LDQSSALFIPFFDEDTNLLYI 276 (493)
T ss_pred EEEEEecCCCCcc-eEEEEcCCCCeEEEEecCC--CCCCeEEEEeCCCCCCceeEec--cCCCCceEEEEEcCCCCEEEE
Confidence 21 1111111111 111112 333344444321 1124688999865431 1111 11111111122 25666666
Q ss_pred eeCCCcceEEEeCCCCceeee
Q 017349 282 SEHGDCPMKQYNPDDDTWRYV 302 (373)
Q Consensus 282 gg~~~~~~~~yd~~~~~W~~~ 302 (373)
||.+...+..||..+++....
T Consensus 277 ggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 277 GSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred EEeCCCeEEEEEeeCCceEEE
Confidence 665456888999987765543
No 131
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.83 E-value=14 Score=34.41 Aligned_cols=114 Identities=10% Similarity=0.088 Sum_probs=59.1
Q ss_pred CCeEEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCc-----eeecccCccC-CcceEEEEECCeE
Q 017349 205 SDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT-----WNLMSDGMKE-GWTGISIVLEGKL 278 (373)
Q Consensus 205 t~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~-----W~~~~~~~~~-~~~~~~~~~~~~l 278 (373)
...|+.+......+........++.++++|... .++.-+..... |.++..+... ........-++.+
T Consensus 269 ~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G-------~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~ 341 (398)
T PLN00033 269 QPYWQPHNRASARRIQNMGWRADGGLWLLTRGG-------GLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEA 341 (398)
T ss_pred CcceEEecCCCccceeeeeEcCCCCEEEEeCCc-------eEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcE
Confidence 334888754333222222233478888877532 23333333333 4444321111 1111222336788
Q ss_pred EEEeeCCCcceEEEeCCCCceeeecC-CCCCCcccccceEEE-EeCCEEEEEeCC
Q 017349 279 FVISEHGDCPMKQYNPDDDTWRYVGG-DKFPCEVMHRPFAVN-GVEGKIYVVSSG 331 (373)
Q Consensus 279 ~v~gg~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~-~~~~~l~i~GG~ 331 (373)
+++|..+ .+.+-...-++|+.... -+.+ -.-+.+. ..+++.|+.|-.
T Consensus 342 ~a~G~~G--~v~~s~D~G~tW~~~~~~~~~~----~~ly~v~f~~~~~g~~~G~~ 390 (398)
T PLN00033 342 WAAGGSG--ILLRSTDGGKSWKRDKGADNIA----ANLYSVKFFDDKKGFVLGND 390 (398)
T ss_pred EEEECCC--cEEEeCCCCcceeEccccCCCC----cceeEEEEcCCCceEEEeCC
Confidence 8888654 56666666779999763 2222 2233554 455899999853
No 132
>PLN00181 protein SPA1-RELATED; Provisional
Probab=90.78 E-value=22 Score=36.62 Aligned_cols=144 Identities=10% Similarity=0.050 Sum_probs=71.1
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeE--eCCeEEEEcCCCCCCCCcCceEEEEeCCCC
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGN--VNGKIMAVGGTGANINETMTAVECYDPESD 206 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~ 206 (373)
++.+++.|+.+ ..+.+||..++.-. ..+........+.. .++++++.|+.+ ..+.+||..+.
T Consensus 587 ~~~~L~Sgs~D-------g~v~iWd~~~~~~~--~~~~~~~~v~~v~~~~~~g~~latgs~d-------g~I~iwD~~~~ 650 (793)
T PLN00181 587 DPTLLASGSDD-------GSVKLWSINQGVSI--GTIKTKANICCVQFPSESGRSLAFGSAD-------HKVYYYDLRNP 650 (793)
T ss_pred CCCEEEEEcCC-------CEEEEEECCCCcEE--EEEecCCCeEEEEEeCCCCCEEEEEeCC-------CeEEEEECCCC
Confidence 56777787762 16888888765321 11111111111111 246777777765 36889998754
Q ss_pred e--EEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCC----ceeecccC--ccCCcceEEEEECCeE
Q 017349 207 T--WTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKD----TWNLMSDG--MKEGWTGISIVLEGKL 278 (373)
Q Consensus 207 ~--W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~----~W~~~~~~--~~~~~~~~~~~~~~~l 278 (373)
. ...+..-.. .-......++..++.++.+ ..+..||+.+. .|..+... ........+...++.+
T Consensus 651 ~~~~~~~~~h~~--~V~~v~f~~~~~lvs~s~D------~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~ 722 (793)
T PLN00181 651 KLPLCTMIGHSK--TVSYVRFVDSSTLVSSSTD------NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGY 722 (793)
T ss_pred CccceEecCCCC--CEEEEEEeCCCEEEEEECC------CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCE
Confidence 3 111111000 0112223466666677665 46888888643 23322210 0011111122335666
Q ss_pred EEEeeCCCcceEEEeCCCC
Q 017349 279 FVISEHGDCPMKQYNPDDD 297 (373)
Q Consensus 279 ~v~gg~~~~~~~~yd~~~~ 297 (373)
++.|+. ...+.+|+....
T Consensus 723 lasgs~-D~~v~iw~~~~~ 740 (793)
T PLN00181 723 IATGSE-TNEVFVYHKAFP 740 (793)
T ss_pred EEEEeC-CCEEEEEECCCC
Confidence 666664 567888886543
No 133
>PRK04043 tolB translocation protein TolB; Provisional
Probab=90.29 E-value=16 Score=34.32 Aligned_cols=144 Identities=10% Similarity=0.011 Sum_probs=80.0
Q ss_pred ceeEEEeCCCCceeccCCCCCcceeeeeeEeC-CeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEE
Q 017349 147 QSTIMYRATTNQWQLASPMLTPRSFFASGNVN-GKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV 225 (373)
Q Consensus 147 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~ 225 (373)
.++|++|..+++=+.+...+.. .......-+ .+|.+..... ...+++.+|..++.++.+...+.. .......
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~-~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~dl~~g~~~~LT~~~~~-d~~p~~S 285 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGM-LVVSDVSKDGSKLLLTMAPK-----GQPDIYLYDTNTKTLTQITNYPGI-DVNGNFV 285 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCc-EEeeEECCCCCEEEEEEccC-----CCcEEEEEECCCCcEEEcccCCCc-cCccEEC
Confidence 3788888888766665442211 111112223 3555443322 236799999999999888654431 1111222
Q ss_pred ECC-EEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEECCe-EEEEeeCC-------CcceEEEeCCC
Q 017349 226 MGS-KMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGK-LFVISEHG-------DCPMKQYNPDD 296 (373)
Q Consensus 226 ~~~-~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-l~v~gg~~-------~~~~~~yd~~~ 296 (373)
-+| +||+..... ....++.+|..++..+++... .. ......-+|+ |....... ...++.+|+++
T Consensus 286 PDG~~I~F~Sdr~----g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~ 358 (419)
T PRK04043 286 EDDKRIVFVSDRL----GYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS 358 (419)
T ss_pred CCCCEEEEEECCC----CCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC
Confidence 244 577665432 125899999999888666431 11 1122233444 33333221 14789999999
Q ss_pred CceeeecC
Q 017349 297 DTWRYVGG 304 (373)
Q Consensus 297 ~~W~~~~~ 304 (373)
+.++.+..
T Consensus 359 g~~~~LT~ 366 (419)
T PRK04043 359 DYIRRLTA 366 (419)
T ss_pred CCeEECCC
Confidence 98888764
No 134
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=90.15 E-value=14 Score=33.30 Aligned_cols=118 Identities=13% Similarity=0.081 Sum_probs=59.4
Q ss_pred CEEEEEEecCCCCceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEe-ccCCEEEEEcCccC--CCCCCcceeEEEeC
Q 017349 78 PYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSL-PRQGKLFVLGGMRS--DTETPMQSTIMYRA 154 (373)
Q Consensus 78 ~~l~~~gg~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~GG~~~--~~~~~~~~~~~yd~ 154 (373)
+.+|+.-........+++++|..+++..-. ++.. ..+..++ ..++.+|+..-+-. .......-+.+||.
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGm--i~~g------~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~ 74 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGM--IDTG------FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDT 74 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEE--EEEE------SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEET
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEE--eecc------cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEec
Confidence 456776542222234788899888765333 2211 1122222 23566666543210 00134567889999
Q ss_pred CCCceeccCCCCC-ccee-------eeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEE
Q 017349 155 TTNQWQLASPMLT-PRSF-------FASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWT 209 (373)
Q Consensus 155 ~t~~W~~~~~~~~-~r~~-------~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~ 209 (373)
.|-+-..--.+|. +|.. .++..-+..+|+. +.....++-+.|.+.++..
T Consensus 75 ~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~------N~TPa~SVtVVDl~~~kvv 131 (342)
T PF06433_consen 75 QTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQ------NFTPATSVTVVDLAAKKVV 131 (342)
T ss_dssp TTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEE------EESSSEEEEEEETTTTEEE
T ss_pred CcCcccceEecCCcchheecccccceEEccCCcEEEEE------ccCCCCeEEEEECCCCcee
Confidence 9985432112222 1321 2222224456665 3335678999999998764
No 135
>PRK03629 tolB translocation protein TolB; Provisional
Probab=90.05 E-value=17 Score=34.25 Aligned_cols=183 Identities=9% Similarity=-0.025 Sum_probs=89.3
Q ss_pred ceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCC-EEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcc
Q 017349 91 RIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQG-KLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPR 169 (373)
Q Consensus 91 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r 169 (373)
...++.+|..+++-..+...+.. ........++ +|++..... ....++++|..++..+++.......
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~~~-------~~~~~~SPDG~~La~~~~~~-----g~~~I~~~d~~tg~~~~lt~~~~~~ 289 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFPRH-------NGAPAFSPDGSKLAFALSKT-----GSLNLYVMDLASGQIRQVTDGRSNN 289 (429)
T ss_pred CcEEEEEECCCCCeEEccCCCCC-------cCCeEECCCCCEEEEEEcCC-----CCcEEEEEECCCCCEEEccCCCCCc
Confidence 34567777777666655544411 1112233344 455543321 2236999999988877665432111
Q ss_pred eeeeeeEeCCe-EEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEE
Q 017349 170 SFFASGNVNGK-IMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGV 248 (373)
Q Consensus 170 ~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~ 248 (373)
... ...-+++ |+...... ....++.+|+.++.-+.+..... ........-+|+.+++.+... ....++.
T Consensus 290 ~~~-~wSPDG~~I~f~s~~~-----g~~~Iy~~d~~~g~~~~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~---g~~~I~~ 359 (429)
T PRK03629 290 TEP-TWFPDSQNLAYTSDQA-----GRPQVYKVNINGGAPQRITWEGS-QNQDADVSSDGKFMVMVSSNG---GQQHIAK 359 (429)
T ss_pred Cce-EECCCCCEEEEEeCCC-----CCceEEEEECCCCCeEEeecCCC-CccCEEECCCCCEEEEEEccC---CCceEEE
Confidence 111 1112344 44433221 12468888988877665532111 111112222555444433221 1246889
Q ss_pred EeCCCCceeecccCccCCcceEEEEECCeEEEEeeCC--CcceEEEeCCCC
Q 017349 249 YDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHG--DCPMKQYNPDDD 297 (373)
Q Consensus 249 yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~--~~~~~~yd~~~~ 297 (373)
+|++++.++.+.... . .......-+|+.+++.+.. ...++..+.+..
T Consensus 360 ~dl~~g~~~~Lt~~~-~-~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 360 QDLATGGVQVLTDTF-L-DETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred EECCCCCeEEeCCCC-C-CCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 999999888765421 1 1112233466655554433 223555565443
No 136
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.82 E-value=17 Score=33.93 Aligned_cols=195 Identities=13% Similarity=0.153 Sum_probs=100.1
Q ss_pred cCCCCceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCC----CCcceeEEEeCCCCcee-
Q 017349 86 HKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTE----TPMQSTIMYRATTNQWQ- 160 (373)
Q Consensus 86 ~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~----~~~~~~~~yd~~t~~W~- 160 (373)
.++.....++++|..+++...- .++ . ..+.......++..++......... .....++++...+..-.
T Consensus 144 ~~G~e~~~l~v~Dl~tg~~l~d-~i~--~----~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d 216 (414)
T PF02897_consen 144 DGGSEWYTLRVFDLETGKFLPD-GIE--N----PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED 216 (414)
T ss_dssp ETTSSEEEEEEEETTTTEEEEE-EEE--E----EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-
T ss_pred CCCCceEEEEEEECCCCcCcCC-ccc--c----cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhC
Confidence 3445556788899988844321 112 0 1222233333544444443322211 12568899998888654
Q ss_pred -ccCCCCCcce-eeee-eEeCCeEEEEcCCCCCCCCcCceEEEEeCCCC-----eEEeccCCccccccccEEEECCEEEE
Q 017349 161 -LASPMLTPRS-FFAS-GNVNGKIMAVGGTGANINETMTAVECYDPESD-----TWTTAAKLRMGLARYDSAVMGSKMYV 232 (373)
Q Consensus 161 -~~~~~~~~r~-~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~-----~W~~~~~~~~~~~~~~~~~~~~~lyv 232 (373)
.+-..+.... ...+ ..-+++..++.-.. ... .+.++..|.... .|+.+.+--.. ....+...++.+|+
T Consensus 217 ~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~--~~~-~s~v~~~d~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~~~~yi 292 (414)
T PF02897_consen 217 ELVFEEPDEPFWFVSVSRSKDGRYLFISSSS--GTS-ESEVYLLDLDDGGSPDAKPKLLSPREDG-VEYYVDHHGDRLYI 292 (414)
T ss_dssp EEEEC-TTCTTSEEEEEE-TTSSEEEEEEES--SSS-EEEEEEEECCCTTTSS-SEEEEEESSSS--EEEEEEETTEEEE
T ss_pred eeEEeecCCCcEEEEEEecCcccEEEEEEEc--ccc-CCeEEEEeccccCCCcCCcEEEeCCCCc-eEEEEEccCCEEEE
Confidence 2222222222 2222 22344433332221 122 478999999875 78877431111 12233345889999
Q ss_pred EeCccCCCccCCceEEEeCCCCc---ee-ecccCccCC-cceEEEEECCeEEEEeeCC-CcceEEEeCC
Q 017349 233 TEGWTWPFMFSPRGGVYDINKDT---WN-LMSDGMKEG-WTGISIVLEGKLFVISEHG-DCPMKQYNPD 295 (373)
Q Consensus 233 ~gG~~~~~~~~~~i~~yd~~~~~---W~-~~~~~~~~~-~~~~~~~~~~~l~v~gg~~-~~~~~~yd~~ 295 (373)
....+ .....+..+++.+.. |. .+.. .... ........++.|++..-.+ ...+.++|+.
T Consensus 293 ~Tn~~---a~~~~l~~~~l~~~~~~~~~~~l~~-~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 293 LTNDD---APNGRLVAVDLADPSPAEWWTVLIP-EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EE-TT----TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred eeCCC---CCCcEEEEecccccccccceeEEcC-CCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 87633 333578889888765 66 4332 2221 2223356788988875443 4588899988
No 137
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=89.56 E-value=15 Score=32.95 Aligned_cols=145 Identities=14% Similarity=0.140 Sum_probs=81.6
Q ss_pred CCEEEEEEecCCCCceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCC
Q 017349 77 LPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATT 156 (373)
Q Consensus 77 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t 156 (373)
...+.+.||.+ +.-+.++..+..|.- .++ .......++..++++.++..|+..+ .+.++...+
T Consensus 75 ~~~l~aTGGgD----D~AflW~~~~ge~~~--elt----gHKDSVt~~~FshdgtlLATGdmsG-------~v~v~~~st 137 (399)
T KOG0296|consen 75 NNNLVATGGGD----DLAFLWDISTGEFAG--ELT----GHKDSVTCCSFSHDGTLLATGDMSG-------KVLVFKVST 137 (399)
T ss_pred CCceEEecCCC----ceEEEEEccCCccee--Eec----CCCCceEEEEEccCceEEEecCCCc-------cEEEEEccc
Confidence 45566666533 235778888887533 233 2235677777888999999998732 577777777
Q ss_pred C--ceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCcccccc--ccEEEECCEEEE
Q 017349 157 N--QWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLAR--YDSAVMGSKMYV 232 (373)
Q Consensus 157 ~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~--~~~~~~~~~lyv 232 (373)
+ +|....++.. .-.-..--...|+++|-.+ -++++|......-.++ |+.+-.. ..-..-+|+..+
T Consensus 138 g~~~~~~~~e~~d--ieWl~WHp~a~illAG~~D-------GsvWmw~ip~~~~~kv--~~Gh~~~ct~G~f~pdGKr~~ 206 (399)
T KOG0296|consen 138 GGEQWKLDQEVED--IEWLKWHPRAHILLAGSTD-------GSVWMWQIPSQALCKV--MSGHNSPCTCGEFIPDGKRIL 206 (399)
T ss_pred CceEEEeecccCc--eEEEEecccccEEEeecCC-------CcEEEEECCCcceeeE--ecCCCCCcccccccCCCceEE
Confidence 6 5655422210 0000000134566676654 3588888777532222 2222222 222233677666
Q ss_pred EeCccCCCccCCceEEEeCCCCc
Q 017349 233 TEGWTWPFMFSPRGGVYDINKDT 255 (373)
Q Consensus 233 ~gG~~~~~~~~~~i~~yd~~~~~ 255 (373)
.|-.+ ..+.++|+.+++
T Consensus 207 tgy~d------gti~~Wn~ktg~ 223 (399)
T KOG0296|consen 207 TGYDD------GTIIVWNPKTGQ 223 (399)
T ss_pred EEecC------ceEEEEecCCCc
Confidence 65444 578899998884
No 138
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=88.74 E-value=14 Score=32.95 Aligned_cols=92 Identities=12% Similarity=0.058 Sum_probs=58.1
Q ss_pred EEECCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceE-EEEECCeEEEEeeCCCcceEEEeCCCCceeee
Q 017349 224 AVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGI-SIVLEGKLFVISEHGDCPMKQYNPDDDTWRYV 302 (373)
Q Consensus 224 ~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~ 302 (373)
+-++.+..|.+..+ ..+-++++.|..+.+.-. ....+. +..++|++.|-|.. .+.|..||.+.+.--.+
T Consensus 326 Vdfd~kyIVsASgD------RTikvW~~st~efvRtl~---gHkRGIAClQYr~rlvVSGSS-DntIRlwdi~~G~cLRv 395 (499)
T KOG0281|consen 326 VDFDDKYIVSASGD------RTIKVWSTSTCEFVRTLN---GHKRGIACLQYRDRLVVSGSS-DNTIRLWDIECGACLRV 395 (499)
T ss_pred eccccceEEEecCC------ceEEEEeccceeeehhhh---cccccceehhccCeEEEecCC-CceEEEEeccccHHHHH
Confidence 44577855444333 578889999988765432 223333 36789998887654 78899999988765544
Q ss_pred cCCCCCCcccccceEEEEeCCEEEEEeCC
Q 017349 303 GGDKFPCEVMHRPFAVNGVEGKIYVVSSG 331 (373)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~l~i~GG~ 331 (373)
-. .. ..-.-++..+++-+|-||+
T Consensus 396 Le-GH-----EeLvRciRFd~krIVSGaY 418 (499)
T KOG0281|consen 396 LE-GH-----EELVRCIRFDNKRIVSGAY 418 (499)
T ss_pred Hh-ch-----HHhhhheeecCceeeeccc
Confidence 21 11 1123346678888888873
No 139
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=88.73 E-value=12 Score=30.79 Aligned_cols=99 Identities=16% Similarity=0.132 Sum_probs=56.0
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCCCCcee---ccCCCCCc---ceeeeeeEe--CCeEEEEcCCCCCCCCcCceEEE
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQ---LASPMLTP---RSFFASGNV--NGKIMAVGGTGANINETMTAVEC 200 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~---~~~~~~~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 200 (373)
++++|+|-|. ..|+||..+.... .+.....+ ..--++... ++++|++.|.. .+.
T Consensus 62 ~~~~yfFkg~---------~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~~---------y~r 123 (194)
T cd00094 62 TGKIYFFKGD---------KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGDK---------YWR 123 (194)
T ss_pred CCEEEEECCC---------EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCCE---------EEE
Confidence 3899999764 6888887642221 11111111 111222223 58999998864 778
Q ss_pred EeCCCCeEEe-----c----cCCccccccccEEEE-CCEEEEEeCccCCCccCCceEEEeCCCCc
Q 017349 201 YDPESDTWTT-----A----AKLRMGLARYDSAVM-GSKMYVTEGWTWPFMFSPRGGVYDINKDT 255 (373)
Q Consensus 201 yd~~t~~W~~-----~----~~~~~~~~~~~~~~~-~~~lyv~gG~~~~~~~~~~i~~yd~~~~~ 255 (373)
||..+++... + +.+|.. -.++... ++++|++-| +..++||..+.+
T Consensus 124 y~~~~~~v~~~yP~~i~~~w~g~p~~--idaa~~~~~~~~yfF~g--------~~y~~~d~~~~~ 178 (194)
T cd00094 124 YDEKTQKMDPGYPKLIETDFPGVPDK--VDAAFRWLDGYYYFFKG--------DQYWRFDPRSKE 178 (194)
T ss_pred EeCCCccccCCCCcchhhcCCCcCCC--cceeEEeCCCcEEEEEC--------CEEEEEeCccce
Confidence 8776554321 1 112221 1223334 489999987 468999998776
No 140
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.20 E-value=15 Score=31.08 Aligned_cols=184 Identities=16% Similarity=0.120 Sum_probs=100.6
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEeC--CeEEEEcCCCCCCCCcCceEEEEeCCCC
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVN--GKIMAVGGTGANINETMTAVECYDPESD 206 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~yd~~t~ 206 (373)
++.=|..||.+ ..+.+||..|++--+. +.-.-....++.++ ..+.+-|+.+ .++..+|-.++
T Consensus 70 Dnskf~s~GgD-------k~v~vwDV~TGkv~Rr--~rgH~aqVNtV~fNeesSVv~SgsfD-------~s~r~wDCRS~ 133 (307)
T KOG0316|consen 70 DNSKFASCGGD-------KAVQVWDVNTGKVDRR--FRGHLAQVNTVRFNEESSVVASGSFD-------SSVRLWDCRSR 133 (307)
T ss_pred cccccccCCCC-------ceEEEEEcccCeeeee--cccccceeeEEEecCcceEEEecccc-------ceeEEEEcccC
Confidence 56566666542 2789999999853211 10011111233343 3455556665 57889999999
Q ss_pred eEEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEECCeEEEEeeCCC
Q 017349 207 TWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGD 286 (373)
Q Consensus 207 ~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~ 286 (373)
+-+.+.-+...+..-..+.+.+...+.|..+ ..+-.||+..++-.. +.+..+....+..-++...++|-. .
T Consensus 134 s~ePiQildea~D~V~Si~v~~heIvaGS~D------GtvRtydiR~G~l~s--Dy~g~pit~vs~s~d~nc~La~~l-~ 204 (307)
T KOG0316|consen 134 SFEPIQILDEAKDGVSSIDVAEHEIVAGSVD------GTVRTYDIRKGTLSS--DYFGHPITSVSFSKDGNCSLASSL-D 204 (307)
T ss_pred CCCccchhhhhcCceeEEEecccEEEeeccC------CcEEEEEeecceeeh--hhcCCcceeEEecCCCCEEEEeec-c
Confidence 8887777777777777788888888777766 467789998776332 112222222223335555555543 3
Q ss_pred cceEEEeCCCCceeeecCCCCCCcccccceEEEEeCCEEEEEeCCceeeeeEEEEee
Q 017349 287 CPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEEQ 343 (373)
Q Consensus 287 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~ 343 (373)
..+...|.++++--..-. .+.. .-+..-+...+..-.|++|.+ .+.||.|.
T Consensus 205 stlrLlDk~tGklL~sYk-Ghkn--~eykldc~l~qsdthV~sgSE---DG~Vy~wd 255 (307)
T KOG0316|consen 205 STLRLLDKETGKLLKSYK-GHKN--MEYKLDCCLNQSDTHVFSGSE---DGKVYFWD 255 (307)
T ss_pred ceeeecccchhHHHHHhc-cccc--ceeeeeeeecccceeEEeccC---CceEEEEE
Confidence 456666776664332111 1110 011222334445556677753 34566543
No 141
>PRK02889 tolB translocation protein TolB; Provisional
Probab=87.91 E-value=24 Score=33.21 Aligned_cols=144 Identities=10% Similarity=-0.023 Sum_probs=73.0
Q ss_pred ceeEEEeCCCCceeccCCCCCcceeeeeeE-eC-CeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEE
Q 017349 147 QSTIMYRATTNQWQLASPMLTPRSFFASGN-VN-GKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSA 224 (373)
Q Consensus 147 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~ 224 (373)
..++++|..+++=+.+...+. ....... -+ .+|++....+ ....++.+|..++..+.+..-.. .......
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g--~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~~~~~~~lt~~~~-~~~~~~w 291 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKG--SNSAPAWSPDGRTLAVALSRD-----GNSQIYTVNADGSGLRRLTQSSG-IDTEPFF 291 (427)
T ss_pred cEEEEEECCCCCEEEeecCCC--CccceEECCCCCEEEEEEccC-----CCceEEEEECCCCCcEECCCCCC-CCcCeEE
Confidence 479999998886555543321 1111121 23 4555443322 23578889988777666543211 1111122
Q ss_pred EECCE-EEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEECCe-EEEEeeCC-CcceEEEeCCCCceee
Q 017349 225 VMGSK-MYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGK-LFVISEHG-DCPMKQYNPDDDTWRY 301 (373)
Q Consensus 225 ~~~~~-lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-l~v~gg~~-~~~~~~yd~~~~~W~~ 301 (373)
.-+|+ |++..... ....++.+|..++..+.+.. ...........-+|+ |+.....+ ...++++|..+++...
T Consensus 292 SpDG~~l~f~s~~~----g~~~Iy~~~~~~g~~~~lt~-~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 292 SPDGRSIYFTSDRG----GAPQIYRMPASGGAAQRVTF-TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA 366 (427)
T ss_pred cCCCCEEEEEecCC----CCcEEEEEECCCCceEEEec-CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE
Confidence 22555 44433211 12468888888777666542 111111122222454 44333322 3468899998887766
Q ss_pred ec
Q 017349 302 VG 303 (373)
Q Consensus 302 ~~ 303 (373)
+.
T Consensus 367 lt 368 (427)
T PRK02889 367 LT 368 (427)
T ss_pred cc
Confidence 64
No 142
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=87.39 E-value=25 Score=32.77 Aligned_cols=148 Identities=10% Similarity=-0.059 Sum_probs=78.8
Q ss_pred eeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCC-EEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcce
Q 017349 92 IQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQG-KLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRS 170 (373)
Q Consensus 92 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~ 170 (373)
..++++|..+++...+...+. .....+ ...++ .|++..... ....++.+|..++..+.+........
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~------~~~~~~-~spDg~~l~~~~~~~-----~~~~i~~~d~~~~~~~~l~~~~~~~~ 281 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPG------MNGAPA-FSPDGSKLAVSLSKD-----GNPDIYVMDLDGKQLTRLTNGPGIDT 281 (417)
T ss_pred cEEEEEECCCCCEEEeecCCC------CccceE-ECCCCCEEEEEECCC-----CCccEEEEECCCCCEEECCCCCCCCC
Confidence 568889988877666544431 111222 22344 565543321 23479999999887776644321111
Q ss_pred eeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEE-EECCEEEEEeCccCCCccCCceEEE
Q 017349 171 FFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSA-VMGSKMYVTEGWTWPFMFSPRGGVY 249 (373)
Q Consensus 171 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~-~~~~~lyv~gG~~~~~~~~~~i~~y 249 (373)
.......+.+|++..... ....++.+|..++.++.+..-. ....... .-+|+.+++..... ....++.+
T Consensus 282 ~~~~s~dg~~l~~~s~~~-----g~~~iy~~d~~~~~~~~l~~~~--~~~~~~~~spdg~~i~~~~~~~---~~~~i~~~ 351 (417)
T TIGR02800 282 EPSWSPDGKSIAFTSDRG-----GSPQIYMMDADGGEVRRLTFRG--GYNASPSWSPDGDLIAFVHREG---GGFNIAVM 351 (417)
T ss_pred CEEECCCCCEEEEEECCC-----CCceEEEEECCCCCEEEeecCC--CCccCeEECCCCCEEEEEEccC---CceEEEEE
Confidence 111111234455443322 1246899999888877664221 1112222 23566555554331 22478999
Q ss_pred eCCCCceeeccc
Q 017349 250 DINKDTWNLMSD 261 (373)
Q Consensus 250 d~~~~~W~~~~~ 261 (373)
|+.++.++.+..
T Consensus 352 d~~~~~~~~l~~ 363 (417)
T TIGR02800 352 DLDGGGERVLTD 363 (417)
T ss_pred eCCCCCeEEccC
Confidence 999877766653
No 143
>PTZ00420 coronin; Provisional
Probab=87.26 E-value=31 Score=33.79 Aligned_cols=101 Identities=13% Similarity=0.092 Sum_probs=50.5
Q ss_pred eEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEE-EECCEEEEEeCccCCCccCCceEEEeCCCCcee-
Q 017349 180 KIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSA-VMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWN- 257 (373)
Q Consensus 180 ~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~-~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~- 257 (373)
.+++.+|.+ ..+.+||..+.+=. ..+..+..-.++. ..+|.+++.++.+ ..+.+||+.+++=.
T Consensus 139 ~iLaSgS~D-------gtIrIWDl~tg~~~--~~i~~~~~V~SlswspdG~lLat~s~D------~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 139 YIMCSSGFD-------SFVNIWDIENEKRA--FQINMPKKLSSLKWNIKGNLLSGTCVG------KHMHIIDPRKQEIAS 203 (568)
T ss_pred eEEEEEeCC-------CeEEEEECCCCcEE--EEEecCCcEEEEEECCCCCEEEEEecC------CEEEEEECCCCcEEE
Confidence 445556654 35888998876411 1111111111222 2367777777655 57899999876421
Q ss_pred ecccCccCCcceEEEE-----ECCeEEEEeeCCC---cceEEEeCCC
Q 017349 258 LMSDGMKEGWTGISIV-----LEGKLFVISEHGD---CPMKQYNPDD 296 (373)
Q Consensus 258 ~~~~~~~~~~~~~~~~-----~~~~l~v~gg~~~---~~~~~yd~~~ 296 (373)
.+.. .........+. .++..++.+|.+. ..+..||..+
T Consensus 204 tl~g-H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 204 SFHI-HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EEec-ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 1111 11111111111 2445555555432 3689999874
No 144
>PTZ00421 coronin; Provisional
Probab=87.07 E-value=30 Score=33.34 Aligned_cols=145 Identities=6% Similarity=0.033 Sum_probs=69.9
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCCCCceec-----cCCCCCcceeeeeeEe---CCeEEEEcCCCCCCCCcCceEEE
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQL-----ASPMLTPRSFFASGNV---NGKIMAVGGTGANINETMTAVEC 200 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~-----~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~ 200 (373)
++.+++.|+.+ + .+.+||..++.... +..+.........+.+ ++.+++.||.+ ..+.+
T Consensus 87 d~~~LaSgS~D--g-----tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D-------gtVrI 152 (493)
T PTZ00421 87 DPQKLFTASED--G-----TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD-------MVVNV 152 (493)
T ss_pred CCCEEEEEeCC--C-----EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC-------CEEEE
Confidence 55677777652 1 57788876543211 1111111111112222 23566667665 45889
Q ss_pred EeCCCCeEEeccCCcccccc-ccEE-EECCEEEEEeCccCCCccCCceEEEeCCCCcee-ecccCccCCcceEEE-EECC
Q 017349 201 YDPESDTWTTAAKLRMGLAR-YDSA-VMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWN-LMSDGMKEGWTGISI-VLEG 276 (373)
Q Consensus 201 yd~~t~~W~~~~~~~~~~~~-~~~~-~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~-~~~~~~~~~~~~~~~-~~~~ 276 (373)
||..+++-.. .+...... .+.. ..++.+++.|+.+ ..+.+||+.+++-. .+.. ........++ ..++
T Consensus 153 WDl~tg~~~~--~l~~h~~~V~sla~spdG~lLatgs~D------g~IrIwD~rsg~~v~tl~~-H~~~~~~~~~w~~~~ 223 (493)
T PTZ00421 153 WDVERGKAVE--VIKCHSDQITSLEWNLDGSLLCTTSKD------KKLNIIDPRDGTIVSSVEA-HASAKSQRCLWAKRK 223 (493)
T ss_pred EECCCCeEEE--EEcCCCCceEEEEEECCCCEEEEecCC------CEEEEEECCCCcEEEEEec-CCCCcceEEEEcCCC
Confidence 9988765321 11111111 1122 2267787788766 57889999876521 1111 1111111111 1233
Q ss_pred eEEEEeeCC---CcceEEEeCCC
Q 017349 277 KLFVISEHG---DCPMKQYNPDD 296 (373)
Q Consensus 277 ~l~v~gg~~---~~~~~~yd~~~ 296 (373)
..++..|.+ ...+..||..+
T Consensus 224 ~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 224 DLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred CeEEEEecCCCCCCeEEEEeCCC
Confidence 334433321 45789999864
No 145
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=86.98 E-value=29 Score=33.06 Aligned_cols=171 Identities=11% Similarity=0.067 Sum_probs=88.4
Q ss_pred eeEEEeCCCCceeccCCCCCcceeeeeeEe--CCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCcc-ccccccEE
Q 017349 148 STIMYRATTNQWQLASPMLTPRSFFASGNV--NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRM-GLARYDSA 224 (373)
Q Consensus 148 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-~~~~~~~~ 224 (373)
.+|.++..+..=..+.++. +...+.+.+ ++..+++|-.+ ..+++||..+.+ .+..|.. .....++.
T Consensus 198 ~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~-------g~v~iwD~~~~k--~~~~~~~~h~~rvg~l 266 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSD-------GTVQIWDVKEQK--KTRTLRGSHASRVGSL 266 (484)
T ss_pred eEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecC-------CeEEEEehhhcc--ccccccCCcCceeEEE
Confidence 6788888877766665554 444444443 46666666543 358899887663 3333333 22333344
Q ss_pred EECCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEE--EEECCeEEEEeeCCCcceEEEeCCCCceeee
Q 017349 225 VMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGIS--IVLEGKLFVISEHGDCPMKQYNPDDDTWRYV 302 (373)
Q Consensus 225 ~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~--~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~ 302 (373)
.-++.+...|..+ ..|..+|.....=..- . +.......+ ....+.-++..|...+.+.+||.....+..-
T Consensus 267 aW~~~~lssGsr~------~~I~~~dvR~~~~~~~-~-~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~ 338 (484)
T KOG0305|consen 267 AWNSSVLSSGSRD------GKILNHDVRISQHVVS-T-LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT 338 (484)
T ss_pred eccCceEEEecCC------CcEEEEEEecchhhhh-h-hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE
Confidence 5577888888766 5677787754431100 0 111111111 1223444444444578888998733222211
Q ss_pred cCCCCCCcccccceEEEEeCCEEEEEeCCceeeeeEEE
Q 017349 303 GGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVY 340 (373)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~ 340 (373)
- ..+. .+....+..-....|+.+||+.....-.++
T Consensus 339 ~-~~H~--aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 339 F-TEHT--AAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred E-eccc--eeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 0 0000 012222233456789999998654433333
No 146
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=86.71 E-value=22 Score=31.52 Aligned_cols=237 Identities=12% Similarity=0.041 Sum_probs=123.2
Q ss_pred CCEEEEEEecCCCCceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCC
Q 017349 77 LPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATT 156 (373)
Q Consensus 77 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t 156 (373)
.....+|..-+. ....+||+.+.+-...-..+ ..++.+++.+.+.+++.+..--. +.+.....+-+||..
T Consensus 16 ~~~avafaRRPG---~~~~v~D~~~g~~~~~~~a~----~gRHFyGHg~fs~dG~~LytTEn--d~~~g~G~IgVyd~~- 85 (305)
T PF07433_consen 16 RPEAVAFARRPG---TFALVFDCRTGQLLQRLWAP----PGRHFYGHGVFSPDGRLLYTTEN--DYETGRGVIGVYDAA- 85 (305)
T ss_pred CCeEEEEEeCCC---cEEEEEEcCCCceeeEEcCC----CCCEEecCEEEcCCCCEEEEecc--ccCCCcEEEEEEECc-
Confidence 456666664322 34678999888754432333 22466777777655554443222 112345578899998
Q ss_pred CceeccCCCCCc-ceeeeeeEe-CC-eEEEE-cCCCCC---CC------CcCceEEEEeCCCCeEEeccCCccc----cc
Q 017349 157 NQWQLASPMLTP-RSFFASGNV-NG-KIMAV-GGTGAN---IN------ETMTAVECYDPESDTWTTAAKLRMG----LA 219 (373)
Q Consensus 157 ~~W~~~~~~~~~-r~~~~~~~~-~~-~iyv~-GG~~~~---~~------~~~~~~~~yd~~t~~W~~~~~~~~~----~~ 219 (373)
+..+++...+.. ...|-+... ++ .|.|. ||.... +. ....++-..|..+++=..--.+|.. --
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 677777666532 333444443 34 45554 564311 11 1123566677888764333333332 22
Q ss_pred cccEEEECCEEEEEeCccCCCcc-CCceEEEeCCCCceeecccCcc----CCcceEEEEE--CCeEEEEeeCCCcceEEE
Q 017349 220 RYDSAVMGSKMYVTEGWTWPFMF-SPRGGVYDINKDTWNLMSDGMK----EGWTGISIVL--EGKLFVISEHGDCPMKQY 292 (373)
Q Consensus 220 ~~~~~~~~~~lyv~gG~~~~~~~-~~~i~~yd~~~~~W~~~~~~~~----~~~~~~~~~~--~~~l~v~gg~~~~~~~~y 292 (373)
.|-++.-+|.+.+-.-+.+.... ..-+..++... .-+.++.+.. ...+..++.. ++.++.+..-..+.+.+|
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 34445556666655444333222 22333333333 2333322111 1122233333 444555544446688999
Q ss_pred eCCCCceeeecCCCCCCcccccceEEEEeCCEEEEEeCC
Q 017349 293 NPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSG 331 (373)
Q Consensus 293 d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~ 331 (373)
|..+++|.....++ ..++++..++..++..|.
T Consensus 245 d~~tg~~~~~~~l~-------D~cGva~~~~~f~~ssG~ 276 (305)
T PF07433_consen 245 DAATGRLLGSVPLP-------DACGVAPTDDGFLVSSGQ 276 (305)
T ss_pred ECCCCCEeeccccC-------ceeeeeecCCceEEeCCC
Confidence 99999999876444 337777776665555553
No 147
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=86.62 E-value=21 Score=31.26 Aligned_cols=130 Identities=13% Similarity=0.154 Sum_probs=67.2
Q ss_pred eeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEEC
Q 017349 148 STIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMG 227 (373)
Q Consensus 148 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~ 227 (373)
.+..||..++.-+..-....| --.++..+..=.+.||.+ ..+..||..+..=..+..-..+...-.- ...
T Consensus 36 slrlYdv~~~~l~~~~~~~~p--lL~c~F~d~~~~~~G~~d-------g~vr~~Dln~~~~~~igth~~~i~ci~~-~~~ 105 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLKFKHGAP--LLDCAFADESTIVTGGLD-------GQVRRYDLNTGNEDQIGTHDEGIRCIEY-SYE 105 (323)
T ss_pred cEEEEeccchhhhhheecCCc--eeeeeccCCceEEEeccC-------ceEEEEEecCCcceeeccCCCceEEEEe-ecc
Confidence 688888888733222111111 122334444445567765 3588999988875555432222111000 112
Q ss_pred CEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEeCCCC
Q 017349 228 SKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDD 297 (373)
Q Consensus 228 ~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~ 297 (373)
....+.||.+ ..|..+|+....=. .......... +..+.+..+|+|+. ...+.+||+.+.
T Consensus 106 ~~~vIsgsWD------~~ik~wD~R~~~~~--~~~d~~kkVy-~~~v~g~~LvVg~~-~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 106 VGCVISGSWD------KTIKFWDPRNKVVV--GTFDQGKKVY-CMDVSGNRLVVGTS-DRKVLIYDLRNL 165 (323)
T ss_pred CCeEEEcccC------ccEEEEeccccccc--cccccCceEE-EEeccCCEEEEeec-CceEEEEEcccc
Confidence 3345678877 67888888762110 1111111222 24445556666554 568999998654
No 148
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.29 E-value=20 Score=30.53 Aligned_cols=54 Identities=19% Similarity=0.208 Sum_probs=27.9
Q ss_pred eCCCCceeeccc-CccCCcceEE-EEECCeEEEEeeCCCcceEEEeCCCCceeeecC
Q 017349 250 DINKDTWNLMSD-GMKEGWTGIS-IVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGG 304 (373)
Q Consensus 250 d~~~~~W~~~~~-~~~~~~~~~~-~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~ 304 (373)
+.+.+.|+..-- +.+......+ ...++-|-|-||.+.-.+|+-|. .++|+.+..
T Consensus 241 ~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~-~Gkw~~v~~ 296 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV-DGKWEEVGE 296 (299)
T ss_pred cCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC-CCcEEEccc
Confidence 344567865321 2344444444 33455555556654334444444 358999864
No 149
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=85.97 E-value=29 Score=32.09 Aligned_cols=120 Identities=7% Similarity=0.071 Sum_probs=68.8
Q ss_pred CceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeee-EeCCeEEEEcCCCCCCCCcCce
Q 017349 119 QAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASG-NVNGKIMAVGGTGANINETMTA 197 (373)
Q Consensus 119 ~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~ 197 (373)
..+.++++-.+|.||..|-.+ ..+-+||..... .+..+|..-...... +-+|-.|++-+.+ -.+
T Consensus 348 v~~ts~~fHpDgLifgtgt~d-------~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~ad------d~~ 412 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTPD-------GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAAD------DGS 412 (506)
T ss_pred ceeEEeeEcCCceEEeccCCC-------ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEec------CCe
Confidence 456677776688888876542 267889987776 455555322222223 3344445554443 123
Q ss_pred EEEEeCCCCeEEeccCCccccc-cccEEEE--CCEEEEEeCccCCCccCCceEEEeCCCCceeeccc
Q 017349 198 VECYDPESDTWTTAAKLRMGLA-RYDSAVM--GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD 261 (373)
Q Consensus 198 ~~~yd~~t~~W~~~~~~~~~~~-~~~~~~~--~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~ 261 (373)
+..+|....+ ....++.+-. ......+ .|....++|.+ -.++.|+-.+..|+++..
T Consensus 413 V~lwDLRKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~------l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 413 VKLWDLRKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD------LQVYICKKKTKSWTEIKE 471 (506)
T ss_pred EEEEEehhhc--ccceeeccccccceeEEEcCCCCeEEeecce------eEEEEEecccccceeeeh
Confidence 7888886554 2222222211 1223333 46777777654 467788888999999865
No 150
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=85.93 E-value=26 Score=31.55 Aligned_cols=130 Identities=12% Similarity=0.106 Sum_probs=73.3
Q ss_pred CCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCcccccc--ccEEEECCEEEEEeCccCCCccCCceEEEeCCCC-
Q 017349 178 NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLAR--YDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKD- 254 (373)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~--~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~- 254 (373)
++.+.+-||.+ +..++++..++.|- ..++..... .....++|.+...|+.. ..+.+|+.+++
T Consensus 75 ~~~l~aTGGgD-------D~AflW~~~~ge~~--~eltgHKDSVt~~~FshdgtlLATGdms------G~v~v~~~stg~ 139 (399)
T KOG0296|consen 75 NNNLVATGGGD-------DLAFLWDISTGEFA--GELTGHKDSVTCCSFSHDGTLLATGDMS------GKVLVFKVSTGG 139 (399)
T ss_pred CCceEEecCCC-------ceEEEEEccCCcce--eEecCCCCceEEEEEccCceEEEecCCC------ccEEEEEcccCc
Confidence 66788888876 45788888888853 223332222 22344578888888876 56788877766
Q ss_pred -ceeecccCccCCcceEEEEE-CCeEEEEeeCCCcceEEEeCCCCceeeecCCCCCCcccccceEEEEeCCEEEEEeC
Q 017349 255 -TWNLMSDGMKEGWTGISIVL-EGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSS 330 (373)
Q Consensus 255 -~W~~~~~~~~~~~~~~~~~~-~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG 330 (373)
+|..... ... ..-. .-+ .+.++++| .....+|+|.+..+.-.++-+ - +......+-+.-+||.++.|-
T Consensus 140 ~~~~~~~e-~~d-ieWl-~WHp~a~illAG-~~DGsvWmw~ip~~~~~kv~~--G--h~~~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 140 EQWKLDQE-VED-IEWL-KWHPRAHILLAG-STDGSVWMWQIPSQALCKVMS--G--HNSPCTCGEFIPDGKRILTGY 209 (399)
T ss_pred eEEEeecc-cCc-eEEE-EecccccEEEee-cCCCcEEEEECCCcceeeEec--C--CCCCcccccccCCCceEEEEe
Confidence 4655421 110 0000 111 34455554 447899999988754333321 1 222444555555666655553
No 151
>PRK01742 tolB translocation protein TolB; Provisional
Probab=85.87 E-value=31 Score=32.45 Aligned_cols=160 Identities=11% Similarity=0.057 Sum_probs=76.7
Q ss_pred ceeEEEeCCCCceeccCCCCCcceeeeeeEeCCe-EEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEE
Q 017349 147 QSTIMYRATTNQWQLASPMLTPRSFFASGNVNGK-IMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV 225 (373)
Q Consensus 147 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~ 225 (373)
..++++|..++.-+.+...+.... .....-+++ |++....+ + ..+++.+|..++..+.+..-... .......
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~--g---~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wS 300 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKD--G---VLNIYVMGANGGTPSQLTSGAGN-NTEPSWS 300 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecC--C---cEEEEEEECCCCCeEeeccCCCC-cCCEEEC
Confidence 468999998876555544331111 111112444 44433222 1 23588889988877666432211 1111222
Q ss_pred ECCE-EEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEECCe-EEEEeeCCCcceEEEeCCCCceeeec
Q 017349 226 MGSK-MYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGK-LFVISEHGDCPMKQYNPDDDTWRYVG 303 (373)
Q Consensus 226 ~~~~-lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-l~v~gg~~~~~~~~yd~~~~~W~~~~ 303 (373)
-+|+ |++..... ....++.+|..++.-+.+.. .. ......-+|+ |++.++ ..+..+|..++++..+.
T Consensus 301 pDG~~i~f~s~~~----g~~~I~~~~~~~~~~~~l~~---~~-~~~~~SpDG~~ia~~~~---~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 301 PDGQSILFTSDRS----GSPQVYRMSASGGGASLVGG---RG-YSAQISADGKTLVMING---DNVVKQDLTSGSTEVLS 369 (429)
T ss_pred CCCCEEEEEECCC----CCceEEEEECCCCCeEEecC---CC-CCccCCCCCCEEEEEcC---CCEEEEECCCCCeEEec
Confidence 3555 44443222 11366777765554333321 11 1111222444 444433 36788999988887664
Q ss_pred CCCCCCcccccceEEEEeCCEEEEEeC
Q 017349 304 GDKFPCEVMHRPFAVNGVEGKIYVVSS 330 (373)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~l~i~GG 330 (373)
. +.. .... ...-+++.++++.
T Consensus 370 ~-~~~----~~~~-~~sPdG~~i~~~s 390 (429)
T PRK01742 370 S-TFL----DESP-SISPNGIMIIYSS 390 (429)
T ss_pred C-CCC----CCCc-eECCCCCEEEEEE
Confidence 2 111 1111 2344666666654
No 152
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=85.79 E-value=40 Score=33.57 Aligned_cols=141 Identities=12% Similarity=0.193 Sum_probs=78.2
Q ss_pred eeeEeC--CeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEe
Q 017349 173 ASGNVN--GKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYD 250 (373)
Q Consensus 173 ~~~~~~--~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd 250 (373)
..+.++ |.-..+|+.. +-.+.+|+-++++...-..-...+-...+..-+|.+.+.|+.+ ..+-+||
T Consensus 311 ~t~~~N~tGDWiA~g~~k------lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD------gKVKvWn 378 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCSK------LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAED------GKVKVWN 378 (893)
T ss_pred eEEEecccCCEEEEcCCc------cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCC------CcEEEEe
Confidence 344444 6677777653 5567888877777643322122222222223388888888877 6788999
Q ss_pred CCCCc-eeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEeCCCC-ceeeecCCCCCCcccccceEEEEeC--CEEE
Q 017349 251 INKDT-WNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDD-TWRYVGGDKFPCEVMHRPFAVNGVE--GKIY 326 (373)
Q Consensus 251 ~~~~~-W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~~~~--~~l~ 326 (373)
..++. ...... ...+-.+......|+..+-..- .+.+..||.++- -+..... |.| ..+++++.+ |.|+
T Consensus 379 ~~SgfC~vTFte-Hts~Vt~v~f~~~g~~llssSL-DGtVRAwDlkRYrNfRTft~-P~p-----~QfscvavD~sGelV 450 (893)
T KOG0291|consen 379 TQSGFCFVTFTE-HTSGVTAVQFTARGNVLLSSSL-DGTVRAWDLKRYRNFRTFTS-PEP-----IQFSCVAVDPSGELV 450 (893)
T ss_pred ccCceEEEEecc-CCCceEEEEEEecCCEEEEeec-CCeEEeeeecccceeeeecC-CCc-----eeeeEEEEcCCCCEE
Confidence 88763 222221 1122222223344554443322 447888888753 2444432 333 557777766 8888
Q ss_pred EEeCCce
Q 017349 327 VVSSGLN 333 (373)
Q Consensus 327 i~GG~~~ 333 (373)
++|+-..
T Consensus 451 ~AG~~d~ 457 (893)
T KOG0291|consen 451 CAGAQDS 457 (893)
T ss_pred Eeeccce
Confidence 8887533
No 153
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=85.10 E-value=31 Score=31.70 Aligned_cols=155 Identities=16% Similarity=0.222 Sum_probs=86.6
Q ss_pred eEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCe--EEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCC
Q 017349 175 GNVNGKIMAVGGTGANINETMTAVECYDPESDT--WTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDIN 252 (373)
Q Consensus 175 ~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~ 252 (373)
+..++++|+... + + .+..+|+.+.+ |+.-...............+|+||+-.. + ..+++||..
T Consensus 65 ~~~dg~v~~~~~-~--G-----~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~-~------g~~y~ld~~ 129 (370)
T COG1520 65 ADGDGTVYVGTR-D--G-----NIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSW-D------GKLYALDAS 129 (370)
T ss_pred EeeCCeEEEecC-C--C-----cEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecc-c------ceEEEEECC
Confidence 667889998621 1 1 68999999886 8654332111112223333788775443 2 268999996
Q ss_pred CC--ceeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEeCCCC--ceeeecCCCCCCcccccceEEEEeCCEEEEE
Q 017349 253 KD--TWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDD--TWRYVGGDKFPCEVMHRPFAVNGVEGKIYVV 328 (373)
Q Consensus 253 ~~--~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 328 (373)
++ .|+.-.... .......++.++.+|+.. ....+..+|.++. .|+.-...+.+ . ....+...-++.+|+-
T Consensus 130 ~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s--~~g~~~al~~~tG~~~W~~~~~~~~~-~--~~~~~~~~~~~~vy~~ 203 (370)
T COG1520 130 TGTLVWSRNVGGS-PYYASPPVVGDGTVYVGT--DDGHLYALNADTGTLKWTYETPAPLS-L--SIYGSPAIASGTVYVG 203 (370)
T ss_pred CCcEEEEEecCCC-eEEecCcEEcCcEEEEec--CCCeEEEEEccCCcEEEEEecCCccc-c--ccccCceeecceEEEe
Confidence 55 587643321 122233356677777654 2457888888754 57743321112 1 2222223556667766
Q ss_pred eCCceeeeeEEEEeecCCcccceEE
Q 017349 329 SSGLNVAIGRVYEEQNGGISAEWKV 353 (373)
Q Consensus 329 GG~~~~~~~~~~~~~~d~~~~~W~~ 353 (373)
... . ...++....+.++..|+.
T Consensus 204 ~~~--~-~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 204 SDG--Y-DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred cCC--C-cceEEEEEccCCcEeeee
Confidence 443 1 225565556678888883
No 154
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=84.67 E-value=32 Score=31.59 Aligned_cols=232 Identities=14% Similarity=0.069 Sum_probs=102.0
Q ss_pred CCEEEEEEecCCCCceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEE-cCccCCCCCCcceeEEEeCC
Q 017349 77 LPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVL-GGMRSDTETPMQSTIMYRAT 155 (373)
Q Consensus 77 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~-GG~~~~~~~~~~~~~~yd~~ 155 (373)
+.+|++.+ . ......++..|+.+.+-.+|...+. . ..++..+...++.+|.+ .+ ..++..|..
T Consensus 47 G~kllF~s-~-~dg~~nly~lDL~t~~i~QLTdg~g-~----~~~g~~~s~~~~~~~Yv~~~---------~~l~~vdL~ 110 (386)
T PF14583_consen 47 GRKLLFAS-D-FDGNRNLYLLDLATGEITQLTDGPG-D----NTFGGFLSPDDRALYYVKNG---------RSLRRVDLD 110 (386)
T ss_dssp S-EEEEEE---TTSS-EEEEEETTT-EEEE---SS--B-----TTT-EE-TTSSEEEEEETT---------TEEEEEETT
T ss_pred CCEEEEEe-c-cCCCcceEEEEcccCEEEECccCCC-C----CccceEEecCCCeEEEEECC---------CeEEEEECC
Confidence 44555533 3 3455678999999999999987762 2 23344444546776544 33 278999999
Q ss_pred CCceeccCCCCCcceeeeeeEe--CCeEEEEcCC----CCC------------CCCcCceEEEEeCCCCeEEeccCCccc
Q 017349 156 TNQWQLASPMLTPRSFFASGNV--NGKIMAVGGT----GAN------------INETMTAVECYDPESDTWTTAAKLRMG 217 (373)
Q Consensus 156 t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~----~~~------------~~~~~~~~~~yd~~t~~W~~~~~~~~~ 217 (373)
|.+=+.+-..|..-......+. +...++ |-. +.. ..+....+..-|..|++.+.+-.-..-
T Consensus 111 T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~-g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~w 189 (386)
T PF14583_consen 111 TLEERVVYEVPDDWKGYGTWVANSDCTKLV-GIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDW 189 (386)
T ss_dssp T--EEEEEE--TTEEEEEEEEE-TTSSEEE-EEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-
T ss_pred cCcEEEEEECCcccccccceeeCCCccEEE-EEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCcc
Confidence 9887777666655444333332 233321 111 000 123345677788888887666321111
Q ss_pred cccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEE-EEECCe-EEEEeeCC---CcceEEE
Q 017349 218 LARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGIS-IVLEGK-LFVISEHG---DCPMKQY 292 (373)
Q Consensus 218 ~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~-l~v~gg~~---~~~~~~y 292 (373)
..+...-..+..+..+.-..........|+..|........+....+.-..++= -+-+|+ |+..+... ...+..|
T Consensus 190 lgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~ 269 (386)
T PF14583_consen 190 LGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGY 269 (386)
T ss_dssp EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE
T ss_pred ccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEee
Confidence 111111112344444532221222334788888876655555432222222221 223444 33333211 3457778
Q ss_pred eCCCCceeeecCCCCCCcccccceEEEEeCCEEEEEeCC
Q 017349 293 NPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSG 331 (373)
Q Consensus 293 d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~ 331 (373)
|+++..=+.+.. .| ...|-....+++|++=-|+
T Consensus 270 d~~t~~~~~~~~--~p----~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 270 DPDTGERRRLME--MP----WCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp -TTT--EEEEEE--E-----SEEEEEE-TTSSEEEEEE-
T ss_pred CCCCCCceEEEe--CC----ceeeeEEcCCCCEEEecCC
Confidence 998875444433 34 3557777778888877665
No 155
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.41 E-value=38 Score=32.21 Aligned_cols=155 Identities=10% Similarity=0.069 Sum_probs=77.7
Q ss_pred eEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEE
Q 017349 121 FACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVEC 200 (373)
Q Consensus 121 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 200 (373)
++++... .+.+++.|+.++ .+.+||..+.+-.+.=.............-++.+++.+..+ ..+.+
T Consensus 250 ~~~~f~p-~g~~i~Sgs~D~-------tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d-------~~i~v 314 (456)
T KOG0266|consen 250 TSVAFSP-DGNLLVSGSDDG-------TVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD-------GTIRV 314 (456)
T ss_pred EEEEecC-CCCEEEEecCCC-------cEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC-------ccEEE
Confidence 4444444 558888887632 68999998854322211111111111222356666666544 45889
Q ss_pred EeCCCCeEE---eccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCc----eeecccCccCCcceEEEE
Q 017349 201 YDPESDTWT---TAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT----WNLMSDGMKEGWTGISIV 273 (373)
Q Consensus 201 yd~~t~~W~---~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~----W~~~~~~~~~~~~~~~~~ 273 (373)
||..++.-. .+.....+..-..+....+..|++.+..+ ..+-.||+.+.. |...... ........-.
T Consensus 315 wd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d-----~~~~~w~l~~~~~~~~~~~~~~~-~~~~~~~~~~ 388 (456)
T KOG0266|consen 315 WDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD-----RTLKLWDLRSGKSVGTYTGHSNL-VRCIFSPTLS 388 (456)
T ss_pred EECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC-----CeEEEEEccCCcceeeecccCCc-ceeEeccccc
Confidence 999988743 23222222111222332333444444331 466777777653 3332221 1111111123
Q ss_pred ECCeEEEEeeCCCcceEEEeCCCC
Q 017349 274 LEGKLFVISEHGDCPMKQYNPDDD 297 (373)
Q Consensus 274 ~~~~l~v~gg~~~~~~~~yd~~~~ 297 (373)
.++++.+.|.. ...+..||+.+.
T Consensus 389 ~~~~~i~sg~~-d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 389 TGGKLIYSGSE-DGSVYVWDSSSG 411 (456)
T ss_pred CCCCeEEEEeC-CceEEEEeCCcc
Confidence 35666666554 678899998863
No 156
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=83.96 E-value=27 Score=30.04 Aligned_cols=182 Identities=12% Similarity=0.189 Sum_probs=82.7
Q ss_pred CCcceeEEEeCCCC-ceecc---CCC----C-CcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEe---CCCCeEEec
Q 017349 144 TPMQSTIMYRATTN-QWQLA---SPM----L-TPRSFFASGNVNGKIMAVGGTGANINETMTAVECYD---PESDTWTTA 211 (373)
Q Consensus 144 ~~~~~~~~yd~~t~-~W~~~---~~~----~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd---~~t~~W~~~ 211 (373)
..+.-.|+-....+ +|+.- .++ | ..-...++.+++++||.+--...-....+...+.|| ...+.|+..
T Consensus 41 ~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~t 120 (367)
T PF12217_consen 41 DNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRIT 120 (367)
T ss_dssp TT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEE
T ss_pred cceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceee
Confidence 44555666665544 68652 222 2 123345778899999987543211233345556665 467789753
Q ss_pred --cCCcc-------ccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCcee--------ecccCccCCcceEE-EE
Q 017349 212 --AKLRM-------GLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWN--------LMSDGMKEGWTGIS-IV 273 (373)
Q Consensus 212 --~~~~~-------~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~--------~~~~~~~~~~~~~~-~~ 273 (373)
+..+. .-.-|+-+.+++.-|.+|-..+.-....-...|- ++.|. .++.......+..+ -.
T Consensus 121 eL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yf--s~~~~sp~~~vrr~i~sey~~~AsEPCvky 198 (367)
T PF12217_consen 121 ELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYF--SDAFASPGVFVRRIIPSEYERNASEPCVKY 198 (367)
T ss_dssp EEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEE--TTTTT-TT--EEEE--GGG-TTEEEEEEEE
T ss_pred ecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEe--cccccCCcceeeeechhhhccccccchhhh
Confidence 33333 1233556667777777775443222211112221 12221 12211222222333 35
Q ss_pred ECCeEEEEeeCC-----CcceEEEeCCCCceeeecCCCCCCcccccceEEEEeCCEEEEEeC
Q 017349 274 LEGKLFVISEHG-----DCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSS 330 (373)
Q Consensus 274 ~~~~l~v~gg~~-----~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG 330 (373)
.+|+||+..... ...+.+-+.....|..+.- |.. ......-.+..++.||+||-
T Consensus 199 Y~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrf-p~n--vHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 199 YDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRF-PNN--VHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp ETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE--TT-----SS---EEEETTEEEEEEE
T ss_pred hCCEEEEEEcCcCCCCCcceeeeecccCCchhhccc-ccc--ccccCCCceeeCCEEEEEec
Confidence 799999985322 3456677777778998862 222 11222335788999999985
No 157
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=83.83 E-value=33 Score=30.97 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=39.2
Q ss_pred CCEEEEEeCc--cCC-CccCCceEEEeCCCCce-eecccCccCCcceEEEEECCe--EEEEeeCCCcceEEEeCCCCcee
Q 017349 227 GSKMYVTEGW--TWP-FMFSPRGGVYDINKDTW-NLMSDGMKEGWTGISIVLEGK--LFVISEHGDCPMKQYNPDDDTWR 300 (373)
Q Consensus 227 ~~~lyv~gG~--~~~-~~~~~~i~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~--l~v~gg~~~~~~~~yd~~~~~W~ 300 (373)
.++||+..-. .+. ......|++||+++++= .+++ +.....+..+.-+++ ||.+.+ ....+.+||..+++-.
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~--l~~~~~Si~Vsqd~~P~L~~~~~-~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP--LEHPIDSIAVSQDDKPLLYALSA-GDGTLDVYDAATGKLV 325 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE--EEEEESEEEEESSSS-EEEEEET-TTTEEEEEETTT--EE
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe--CCCccceEEEccCCCcEEEEEcC-CCCeEEEEeCcCCcEE
Confidence 6789987421 111 12235899999999863 2332 222222333555666 443433 2458999999988554
No 158
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=82.72 E-value=45 Score=31.74 Aligned_cols=147 Identities=11% Similarity=0.129 Sum_probs=78.3
Q ss_pred ccCCEEEEEcCccCCCCCCcceeEEEeCCCC-c-eeccCCCCCcceeeeeeE-eCCeEEEEcCCCCCCCCcCceEEEEeC
Q 017349 127 PRQGKLFVLGGMRSDTETPMQSTIMYRATTN-Q-WQLASPMLTPRSFFASGN-VNGKIMAVGGTGANINETMTAVECYDP 203 (373)
Q Consensus 127 ~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~-~-W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~ 203 (373)
..++++.+.|.. -..+.+||...+ . -+.+....... ++++. -.+.+++.|+.+ ..+.++|.
T Consensus 212 s~d~~~l~s~s~-------D~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D-------~tvriWd~ 275 (456)
T KOG0266|consen 212 SPDGSYLLSGSD-------DKTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDD-------GTVRIWDV 275 (456)
T ss_pred CCCCcEEEEecC-------CceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCC-------CcEEEEec
Confidence 336665554443 126888888433 2 23333333333 23332 245788888776 46889999
Q ss_pred CCCeEEeccCCccccccccEE--EECCEEEEEeCccCCCccCCceEEEeCCCCcee---ecccCccCCcceEEEEECCeE
Q 017349 204 ESDTWTTAAKLRMGLARYDSA--VMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWN---LMSDGMKEGWTGISIVLEGKL 278 (373)
Q Consensus 204 ~t~~W~~~~~~~~~~~~~~~~--~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~---~~~~~~~~~~~~~~~~~~~~l 278 (373)
.+.+-... +......-.++ .-++.+++.+.++ ..+.+||..++.-. .+...........+....+..
T Consensus 276 ~~~~~~~~--l~~hs~~is~~~f~~d~~~l~s~s~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~ 347 (456)
T KOG0266|consen 276 RTGECVRK--LKGHSDGISGLAFSPDGNLLVSASYD------GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK 347 (456)
T ss_pred cCCeEEEe--eeccCCceEEEEECCCCCEEEEcCCC------ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc
Confidence 98554332 22222222222 2367788887665 67999999998854 222211111122222224445
Q ss_pred EEEeeCCCcceEEEeCCCC
Q 017349 279 FVISEHGDCPMKQYNPDDD 297 (373)
Q Consensus 279 ~v~gg~~~~~~~~yd~~~~ 297 (373)
|++.+.....+..||+...
T Consensus 348 ~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 348 YLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred EEEEecCCCeEEEEEccCC
Confidence 5554544557777777654
No 159
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=82.50 E-value=55 Score=32.62 Aligned_cols=166 Identities=13% Similarity=0.106 Sum_probs=83.0
Q ss_pred eeEEEeCCCCceeccCCCCCcc-eeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEE-
Q 017349 148 STIMYRATTNQWQLASPMLTPR-SFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV- 225 (373)
Q Consensus 148 ~~~~yd~~t~~W~~~~~~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~- 225 (373)
.+.+||..++.-.+.=.....+ ..+....+.+.+.++-|+. --.+.+|+..++. + +....+|.+++
T Consensus 44 ~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYa------DGsVqif~~~s~~---~---~~tfngHK~AVt 111 (888)
T KOG0306|consen 44 QVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYA------DGSVQIFSLESEE---I---LITFNGHKAAVT 111 (888)
T ss_pred cEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEec------CceEEeeccCCCc---e---eeeecccccceE
Confidence 6888999888432211111223 2223334456665555553 1357788777661 1 11111222211
Q ss_pred -E----CCEEEEEeCccCCCccCCceEEEeCCCCc--eeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEeCCCCc
Q 017349 226 -M----GSKMYVTEGWTWPFMFSPRGGVYDINKDT--WNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDT 298 (373)
Q Consensus 226 -~----~~~lyv~gG~~~~~~~~~~i~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~ 298 (373)
+ .|..++.||.+ ..|.+||..... .+.-. ........-..-++++.|.-+. ...+..||+++..
T Consensus 112 ~l~fd~~G~rlaSGskD------t~IIvwDlV~E~Gl~rL~G--Hkd~iT~~~F~~~~~~lvS~sK-Ds~iK~WdL~tqh 182 (888)
T KOG0306|consen 112 TLKFDKIGTRLASGSKD------TDIIVWDLVGEEGLFRLRG--HKDSITQALFLNGDSFLVSVSK-DSMIKFWDLETQH 182 (888)
T ss_pred EEEEcccCceEeecCCC------ccEEEEEeccceeeEEeec--chHHHhHHhccCCCeEEEEecc-CceEEEEecccce
Confidence 1 45666777777 678998886543 22211 0010111111223555554443 4567788998876
Q ss_pred eeeecCCCCCCcccccceEEEEeCCEEEEEeCCceeeeeEEEEe
Q 017349 299 WRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEE 342 (373)
Q Consensus 299 W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~ 342 (373)
--+.. +... ....+++..+ ++.|.+|. .+...||+.
T Consensus 183 Cf~Th-vd~r----~Eiw~l~~~~-~~lvt~~~--dse~~v~~L 218 (888)
T KOG0306|consen 183 CFETH-VDHR----GEIWALVLDE-KLLVTAGT--DSELKVWEL 218 (888)
T ss_pred eeeEE-eccc----ceEEEEEEec-ceEEEEec--CCceEEEEe
Confidence 55433 2222 4567777777 55555553 244566664
No 160
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=82.48 E-value=34 Score=30.23 Aligned_cols=148 Identities=11% Similarity=0.170 Sum_probs=75.9
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCC------cceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEe
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLT------PRSFFASGNVNGKIMAVGGTGANINETMTAVECYD 202 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd 202 (373)
.+.+-++||.... ....+.+.+||-...+-..-..... -|..+-+++..++|||+-=. ..+..+..+|
T Consensus 58 ~N~laLVGGg~~p-ky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~-----~n~k~l~~~e 131 (346)
T KOG2111|consen 58 SNYLALVGGGSRP-KYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFP-----DNPKLLHVIE 131 (346)
T ss_pred hceEEEecCCCCC-CCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcC-----CChhheeeee
Confidence 4666677776432 3677899999954443211111111 13345566667777776322 1233344443
Q ss_pred CCCCeEEeccCCccccccccEEE-ECCEEEEEeCccCCCccCCceEEEeCCCCcee---ecccCccCCcceEEEEECCeE
Q 017349 203 PESDTWTTAAKLRMGLARYDSAV-MGSKMYVTEGWTWPFMFSPRGGVYDINKDTWN---LMSDGMKEGWTGISIVLEGKL 278 (373)
Q Consensus 203 ~~t~~W~~~~~~~~~~~~~~~~~-~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~---~~~~~~~~~~~~~~~~~~~~l 278 (373)
...| |. .-++.+. .+..+.++-|.. ...+.+-|+...+-. .+.. ........+...+|.+
T Consensus 132 t~~N--------Pk--GlC~~~~~~~k~~LafPg~k-----~GqvQi~dL~~~~~~~p~~I~A-H~s~Iacv~Ln~~Gt~ 195 (346)
T KOG2111|consen 132 TRSN--------PK--GLCSLCPTSNKSLLAFPGFK-----TGQVQIVDLASTKPNAPSIINA-HDSDIACVALNLQGTL 195 (346)
T ss_pred cccC--------CC--ceEeecCCCCceEEEcCCCc-----cceEEEEEhhhcCcCCceEEEc-ccCceeEEEEcCCccE
Confidence 3322 22 2111111 134466665543 256778888665542 1111 1122222234457888
Q ss_pred EEEeeCCCcceEEEeCCCCc
Q 017349 279 FVISEHGDCPMKQYNPDDDT 298 (373)
Q Consensus 279 ~v~gg~~~~~~~~yd~~~~~ 298 (373)
...++....-|.+||..+++
T Consensus 196 vATaStkGTLIRIFdt~~g~ 215 (346)
T KOG2111|consen 196 VATASTKGTLIRIFDTEDGT 215 (346)
T ss_pred EEEeccCcEEEEEEEcCCCc
Confidence 88877766778888887764
No 161
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=82.46 E-value=29 Score=29.67 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=63.9
Q ss_pred ceeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEc-CCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEE
Q 017349 147 QSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVG-GTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV 225 (373)
Q Consensus 147 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~G-G~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~ 225 (373)
..+..||..|++-.+-=.++.+... .-...+++|..+. |. ++-.+|+.+-.=-+--.||.... ++.
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~s~VtS-lEvs~dG~ilTia~gs---------sV~Fwdaksf~~lKs~k~P~nV~---SAS 231 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFNSPVTS-LEVSQDGRILTIAYGS---------SVKFWDAKSFGLLKSYKMPCNVE---SAS 231 (334)
T ss_pred CceEEEEeccCcEEEEEecCCCCcc-eeeccCCCEEEEecCc---------eeEEeccccccceeeccCccccc---ccc
Confidence 4678888888764332222222221 1122355555442 22 24455554432222224444322 222
Q ss_pred E--CCEEEEEeCccCCCccCCceEEEeCCCCceeecc-cCccCCcceEEEEECCeEEEEeeCC-CcceEEEeC
Q 017349 226 M--GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMS-DGMKEGWTGISIVLEGKLFVISEHG-DCPMKQYNP 294 (373)
Q Consensus 226 ~--~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~l~v~gg~~-~~~~~~yd~ 294 (373)
+ +..+||.||.+ ..++.||..++.=...- ...+.+-+.....=+|.+|..|..+ ...+|.-.+
T Consensus 232 L~P~k~~fVaGged------~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 232 LHPKKEFFVAGGED------FKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred ccCCCceEEecCcc------eEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 2 44799999977 57889999887522221 1111112211123489999998764 234444444
No 162
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=82.05 E-value=31 Score=29.47 Aligned_cols=97 Identities=11% Similarity=0.128 Sum_probs=49.7
Q ss_pred EEEEeccCCEEEEE-cCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEE
Q 017349 122 ACTSLPRQGKLFVL-GGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVEC 200 (373)
Q Consensus 122 ~~~~~~~~~~i~v~-GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 200 (373)
.+.-+..+|+|+.+ -| ..+--+|+.+-.--+--.||......++ .-+..+||+||.+ -.++.
T Consensus 188 tSlEvs~dG~ilTia~g---------ssV~Fwdaksf~~lKs~k~P~nV~SASL-~P~k~~fVaGged-------~~~~k 250 (334)
T KOG0278|consen 188 TSLEVSQDGRILTIAYG---------SSVKFWDAKSFGLLKSYKMPCNVESASL-HPKKEFFVAGGED-------FKVYK 250 (334)
T ss_pred cceeeccCCCEEEEecC---------ceeEEeccccccceeeccCccccccccc-cCCCceEEecCcc-------eEEEE
Confidence 34444446666654 22 2455566654432222234432222111 1245799999986 34788
Q ss_pred EeCCCCeEEeccCCccccccccE-E--EECCEEEEEeCcc
Q 017349 201 YDPESDTWTTAAKLRMGLARYDS-A--VMGSKMYVTEGWT 237 (373)
Q Consensus 201 yd~~t~~W~~~~~~~~~~~~~~~-~--~~~~~lyv~gG~~ 237 (373)
||-.|+. ++........++.- + .-+|.+|..|..+
T Consensus 251 fDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 251 FDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred EeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCC
Confidence 8888874 22222222222221 1 2289999998766
No 163
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.86 E-value=32 Score=29.37 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=16.7
Q ss_pred EEEEEeCccCCCccCCceEEEeCCCCceee
Q 017349 229 KMYVTEGWTWPFMFSPRGGVYDINKDTWNL 258 (373)
Q Consensus 229 ~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~ 258 (373)
+=++.||.+ +.+-+++..+++|..
T Consensus 176 krlvSgGcD------n~VkiW~~~~~~w~~ 199 (299)
T KOG1332|consen 176 KRLVSGGCD------NLVKIWKFDSDSWKL 199 (299)
T ss_pred ceeeccCCc------cceeeeecCCcchhh
Confidence 346678877 567777777778864
No 164
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=81.01 E-value=41 Score=30.10 Aligned_cols=213 Identities=15% Similarity=0.155 Sum_probs=105.1
Q ss_pred CCceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCc-eeccCC---
Q 017349 89 TARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQ-WQLASP--- 164 (373)
Q Consensus 89 ~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~-W~~~~~--- 164 (373)
....+++.||+.+..-....... .......+..++.|+.+.. .++.+++.+.. ++.+..
T Consensus 44 I~~~~i~r~~~~~g~~~~~~~p~-------~~~~~~~~d~~g~Lv~~~~----------g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 44 ILGGRIHRLDPETGKKRVFPSPG-------GFSSGALIDAGGRLIACEH----------GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred CCCCeEEEecCCcCceEEEECCC-------CcccceeecCCCeEEEEcc----------ccEEEeccCCceeEEeccccC
Confidence 34456888888766544432211 1112222222455555422 46666665443 344432
Q ss_pred -CCCcceeeeeeEeCCeEEEEcCC----CCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEECC-EEEEEeCccC
Q 017349 165 -MLTPRSFFASGNVNGKIMAVGGT----GANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGS-KMYVTEGWTW 238 (373)
Q Consensus 165 -~~~~r~~~~~~~~~~~iyv~GG~----~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~-~lyv~gG~~~ 238 (373)
.+..|.+-..+.-++.+|+-.-. ........-.++++||. +...++..-.....+.-+..-++ .+|+.--
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~aDT--- 182 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVADT--- 182 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEEeC---
Confidence 23345555555556777653211 11133444579999994 44444422111112222222355 5666532
Q ss_pred CCccCCceEEEeCCC--C------ceeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEeCCCCceeeecCCCCCCc
Q 017349 239 PFMFSPRGGVYDINK--D------TWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCE 310 (373)
Q Consensus 239 ~~~~~~~i~~yd~~~--~------~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~ 310 (373)
..+.+++|+... . .+..... .+..--+.++--+|.||+....+...+.+|+++.+.-..+. +|.+
T Consensus 183 ---~~~~i~r~~~d~~~g~~~~~~~~~~~~~-~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~-lP~~-- 255 (307)
T COG3386 183 ---PANRIHRYDLDPATGPIGGRRGFVDFDE-EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIK-LPVK-- 255 (307)
T ss_pred ---CCCeEEEEecCcccCccCCcceEEEccC-CCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEE-CCCC--
Confidence 236788887753 1 1222111 11222344466789999765544559999999844444443 3432
Q ss_pred ccccceEEEEe---CCEEEEEeCCc
Q 017349 311 VMHRPFAVNGV---EGKIYVVSSGL 332 (373)
Q Consensus 311 ~~~~~~~~~~~---~~~l~i~GG~~ 332 (373)
....++.- .+.|||..-..
T Consensus 256 ---~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 256 ---RPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred ---CCccceEeCCCcCEEEEEecCC
Confidence 11222222 37799988765
No 165
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=80.79 E-value=24 Score=35.97 Aligned_cols=33 Identities=12% Similarity=0.263 Sum_probs=24.0
Q ss_pred ccEEEECCEEEEEeCccCCCccCCceEEEeCCCCc--eeecc
Q 017349 221 YDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT--WNLMS 260 (373)
Q Consensus 221 ~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~--W~~~~ 260 (373)
.+-++.+++||+.... +.++++|.+|++ |+.-.
T Consensus 188 ~TPlvvgg~lYv~t~~-------~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPH-------NKVIALDAATGKEKWKFDP 222 (764)
T ss_pred cCCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcC
Confidence 3456779999997653 478999998775 87543
No 166
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=80.79 E-value=23 Score=32.54 Aligned_cols=99 Identities=11% Similarity=0.049 Sum_probs=57.6
Q ss_pred CCceeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEeCCCCceeeecCC-C--CCCcccccceEEEEeCCEEEEEe
Q 017349 253 KDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGD-K--FPCEVMHRPFAVNGVEGKIYVVS 329 (373)
Q Consensus 253 ~~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~-~--~~~~~~~~~~~~~~~~~~l~i~G 329 (373)
.+.|+.+.. ......-.+.++|++|++... ..+++++.+- .-.+++.. . ...........+|...|+|+++.
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~~--G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~ 263 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDSI--GIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGELYIVE 263 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcCC--CeEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEEEEEE
Confidence 489999863 233344458899999999543 4777877432 12222210 0 00001112345777889999998
Q ss_pred CCcee-------------eeeEEEEeecCCcccceEEecC
Q 017349 330 SGLNV-------------AIGRVYEEQNGGISAEWKVMTA 356 (373)
Q Consensus 330 G~~~~-------------~~~~~~~~~~d~~~~~W~~~~~ 356 (373)
..... ....+...+.|.+..+|.++..
T Consensus 264 R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~s 303 (373)
T PLN03215 264 RLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKT 303 (373)
T ss_pred EEccCcccccccccccccceeEEEEEEEcCCCCcEEEecc
Confidence 74321 1122333447888999998865
No 167
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=80.67 E-value=35 Score=29.10 Aligned_cols=149 Identities=13% Similarity=0.107 Sum_probs=79.4
Q ss_pred CceeccCCCCC-----cceeeee-eEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEE--ECC
Q 017349 157 NQWQLASPMLT-----PRSFFAS-GNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV--MGS 228 (373)
Q Consensus 157 ~~W~~~~~~~~-----~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~--~~~ 228 (373)
..|+..+++.. |-.+... .--.|.|+..||-. .++..|.++++.++.-.-.. -+-|+.+. .++
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~--------~~y~~dlE~G~i~r~~rGHt-DYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG--------VIYQVDLEDGRIQREYRGHT-DYVHSVVGRNANG 169 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecCCe--------EEEEEEecCCEEEEEEcCCc-ceeeeeeecccCc
Confidence 35877766543 2222222 22467888888753 58889999998765421111 12233332 134
Q ss_pred EEEEEeCccCCCccCCceEEEeCCCCceeec-cc---C--cc--CCcceEEEEECCeEEEEeeCCCcceEEEeCCCCcee
Q 017349 229 KMYVTEGWTWPFMFSPRGGVYDINKDTWNLM-SD---G--MK--EGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWR 300 (373)
Q Consensus 229 ~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~-~~---~--~~--~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~W~ 300 (373)
.|+ .|+.+ ..+-++|..+++=..+ .. + .. -+..-.+...+....+.||.- .+..|++...+=+
T Consensus 170 qil-sG~ED------GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp--~lslwhLrsse~t 240 (325)
T KOG0649|consen 170 QIL-SGAED------GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP--KLSLWHLRSSEST 240 (325)
T ss_pred cee-ecCCC------ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC--ceeEEeccCCCce
Confidence 443 45544 4577889988865433 21 0 11 111223455566677777643 5566666655555
Q ss_pred eecCCCCCCcccccceEEEEeCCEEEEEe
Q 017349 301 YVGGDKFPCEVMHRPFAVNGVEGKIYVVS 329 (373)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~G 329 (373)
.+- |+| -..+-+...++.+++.|
T Consensus 241 ~vf--pip----a~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 241 CVF--PIP----ARVHLVDFVDDCVLIGG 263 (325)
T ss_pred EEE--ecc----cceeEeeeecceEEEec
Confidence 443 555 33444555566666655
No 168
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=79.97 E-value=37 Score=29.03 Aligned_cols=147 Identities=10% Similarity=0.140 Sum_probs=77.1
Q ss_pred EeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeE--eCCeEEEEcCCCCCCCCcCceEEEEe
Q 017349 125 SLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGN--VNGKIMAVGGTGANINETMTAVECYD 202 (373)
Q Consensus 125 ~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd 202 (373)
.++.+++.+..+|. ..+..||..++.=..+.....++.+.+++. .+++...-||.+ ..+.++|
T Consensus 47 eiTpdk~~LAaa~~--------qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD-------gt~kIWd 111 (311)
T KOG0315|consen 47 EITPDKKDLAAAGN--------QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED-------GTVKIWD 111 (311)
T ss_pred EEcCCcchhhhccC--------CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC-------ceEEEEe
Confidence 33446666666664 268899998886333333333344444443 478888888876 2466777
Q ss_pred CCCCeEEeccCCccccccccEEEE-C--CEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCC-cceEEEEECCeE
Q 017349 203 PESDTWTTAAKLRMGLARYDSAVM-G--SKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEG-WTGISIVLEGKL 278 (373)
Q Consensus 203 ~~t~~W~~~~~~~~~~~~~~~~~~-~--~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~-~~~~~~~~~~~l 278 (373)
...-.-++.-..+.+ -..++. - +.|+ .|-.+ ..|.++|+.++.-.....|-+.- ....++.-+|+.
T Consensus 112 lR~~~~qR~~~~~sp---Vn~vvlhpnQteLi-s~dqs------g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm 181 (311)
T KOG0315|consen 112 LRSLSCQRNYQHNSP---VNTVVLHPNQTELI-SGDQS------GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSM 181 (311)
T ss_pred ccCcccchhccCCCC---cceEEecCCcceEE-eecCC------CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcE
Confidence 665332222111111 112232 2 2333 33222 57999999999776543322222 222224445554
Q ss_pred EEEeeCCCcceEEEeCCCC
Q 017349 279 FVISEHGDCPMKQYNPDDD 297 (373)
Q Consensus 279 ~v~gg~~~~~~~~yd~~~~ 297 (373)
.+ +..+.+..++++.-++
T Consensus 182 l~-a~nnkG~cyvW~l~~~ 199 (311)
T KOG0315|consen 182 LA-AANNKGNCYVWRLLNH 199 (311)
T ss_pred EE-EecCCccEEEEEccCC
Confidence 44 3444667777777654
No 169
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=79.43 E-value=56 Score=30.74 Aligned_cols=167 Identities=14% Similarity=0.059 Sum_probs=79.4
Q ss_pred CchhhHhhhhccCCCCEEEEEEecCCCCceeEEEeeCCCCCeeeCC-CCCCCCCCC------CCceE--EEEeccCCEEE
Q 017349 63 DPGFALCKKSLSLSLPYLFIFSFHKPTARIQWQALDPRSGRWFVLP-PMPCPKAVC------PQAFA--CTSLPRQGKLF 133 (373)
Q Consensus 63 ~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~~~-~~~~~~~~~------~~~~~--~~~~~~~~~i~ 133 (373)
...|.....++...+++-++|. ...+++.|||.+.+-+++. .+|..+..- ...+. .+++ +|..+
T Consensus 263 HTnFtdYY~R~~nsDGkrIvFq-----~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~--~Gd~i 335 (668)
T COG4946 263 HTNFTDYYPRNANSDGKRIVFQ-----NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVV--NGDYI 335 (668)
T ss_pred cCCchhccccccCCCCcEEEEe-----cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccC--CCcEE
Confidence 3344444444444455444442 2235899999999887763 233221000 01111 1122 33333
Q ss_pred EEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccC
Q 017349 134 VLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAK 213 (373)
Q Consensus 134 v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~ 213 (373)
++-. ....++.++..+--.+++.-.--|+.+ ...+++-.++|-.+ -..+.+||..+..-+.+..
T Consensus 336 a~VS--------RGkaFi~~~~~~~~iqv~~~~~VrY~r--~~~~~e~~vigt~d------gD~l~iyd~~~~e~kr~e~ 399 (668)
T COG4946 336 ALVS--------RGKAFIMRPWDGYSIQVGKKGGVRYRR--IQVDPEGDVIGTND------GDKLGIYDKDGGEVKRIEK 399 (668)
T ss_pred EEEe--------cCcEEEECCCCCeeEEcCCCCceEEEE--EccCCcceEEeccC------CceEEEEecCCceEEEeeC
Confidence 2211 114666666555444444322223322 22233456666554 2468999999988766632
Q ss_pred CccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCceeec
Q 017349 214 LRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLM 259 (373)
Q Consensus 214 ~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~ 259 (373)
+..+-....+.-+|+..+++-.. -.++++|++++.=+.+
T Consensus 400 -~lg~I~av~vs~dGK~~vvaNdr------~el~vididngnv~~i 438 (668)
T COG4946 400 -DLGNIEAVKVSPDGKKVVVANDR------FELWVIDIDNGNVRLI 438 (668)
T ss_pred -CccceEEEEEcCCCcEEEEEcCc------eEEEEEEecCCCeeEe
Confidence 11111112223356655554332 4677777777654443
No 170
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=77.70 E-value=64 Score=30.40 Aligned_cols=151 Identities=13% Similarity=0.127 Sum_probs=79.1
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeE
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTW 208 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W 208 (373)
+++||.+.-.. ....++.-|..-+.-++-.+... ++..-+..+++-.+|.-. -+++.|||.++.-
T Consensus 235 ~~RvYFlsD~e-----G~GnlYSvdldGkDlrrHTnFtd--YY~R~~nsDGkrIvFq~~--------GdIylydP~td~l 299 (668)
T COG4946 235 GERVYFLSDHE-----GVGNLYSVDLDGKDLRRHTNFTD--YYPRNANSDGKRIVFQNA--------GDIYLYDPETDSL 299 (668)
T ss_pred cceEEEEeccc-----CccceEEeccCCchhhhcCCchh--ccccccCCCCcEEEEecC--------CcEEEeCCCcCcc
Confidence 89999886553 34478888887776655544421 111122234444444211 1489999999988
Q ss_pred Eecc-CCccccccc-----------c-EEEECCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEEC
Q 017349 209 TTAA-KLRMGLARY-----------D-SAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLE 275 (373)
Q Consensus 209 ~~~~-~~~~~~~~~-----------~-~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~ 275 (373)
+++. .+|..|..- . -++.+|.++.+-.. ...+++++..+-=-+++. +.+-...-...+
T Consensus 300 ekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-------GkaFi~~~~~~~~iqv~~--~~~VrY~r~~~~ 370 (668)
T COG4946 300 EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-------GKAFIMRPWDGYSIQVGK--KGGVRYRRIQVD 370 (668)
T ss_pred eeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-------CcEEEECCCCCeeEEcCC--CCceEEEEEccC
Confidence 7764 334332110 0 12335554444322 134555443222222222 111111113345
Q ss_pred CeEEEEeeCCCcceEEEeCCCCceeeec
Q 017349 276 GKLFVISEHGDCPMKQYNPDDDTWRYVG 303 (373)
Q Consensus 276 ~~l~v~gg~~~~~~~~yd~~~~~W~~~~ 303 (373)
++-.++|-.+...+.+||..+..-+.+.
T Consensus 371 ~e~~vigt~dgD~l~iyd~~~~e~kr~e 398 (668)
T COG4946 371 PEGDVIGTNDGDKLGIYDKDGGEVKRIE 398 (668)
T ss_pred CcceEEeccCCceEEEEecCCceEEEee
Confidence 5567777666678899999888766664
No 171
>PRK02889 tolB translocation protein TolB; Provisional
Probab=77.49 E-value=64 Score=30.35 Aligned_cols=147 Identities=11% Similarity=-0.034 Sum_probs=70.1
Q ss_pred cceeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEE
Q 017349 146 MQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAV 225 (373)
Q Consensus 146 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~ 225 (373)
...++.+|.....-+.+......-......--+.+|+.. ... .....++++|..+++=+.+...+... ......
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~-s~~----~~~~~I~~~dl~~g~~~~l~~~~g~~-~~~~~S 248 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYV-SFE----SKKPVVYVHDLATGRRRVVANFKGSN-SAPAWS 248 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEE-Ecc----CCCcEEEEEECCCCCEEEeecCCCCc-cceEEC
Confidence 347888887655444432221111111111123344433 221 12346899999888655554333211 111222
Q ss_pred ECC-EEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEECCe-EEEEeeC-CCcceEEEeCCCCceeee
Q 017349 226 MGS-KMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGK-LFVISEH-GDCPMKQYNPDDDTWRYV 302 (373)
Q Consensus 226 ~~~-~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-l~v~gg~-~~~~~~~yd~~~~~W~~~ 302 (373)
-+| +|++....+ ....++.+|..++..+.+.... .........-+|+ |+..... +...++.+|..++..+.+
T Consensus 249 PDG~~la~~~~~~----g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 249 PDGRTLAVALSRD----GNSQIYTVNADGSGLRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV 323 (427)
T ss_pred CCCCEEEEEEccC----CCceEEEEECCCCCcEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE
Confidence 255 454443322 1257889998877766554311 1111122223555 4433321 245788888877776666
Q ss_pred c
Q 017349 303 G 303 (373)
Q Consensus 303 ~ 303 (373)
.
T Consensus 324 t 324 (427)
T PRK02889 324 T 324 (427)
T ss_pred e
Confidence 4
No 172
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=77.15 E-value=59 Score=29.73 Aligned_cols=122 Identities=11% Similarity=-0.022 Sum_probs=67.1
Q ss_pred CCCEEEEEEecCCCCceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCC--CCCCcceeEEEe
Q 017349 76 SLPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSD--TETPMQSTIMYR 153 (373)
Q Consensus 76 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~--~~~~~~~~~~yd 153 (373)
...++|+.-.......+++.++|..+.+-... ++... +. ++. ....+..+|+.-.+... .......+.+||
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~--i~~G~---~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D 83 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGM--TDGGF---LP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVID 83 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEE--EEccC---CC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 35668876443222237789999988765432 33221 01 122 22336789988663111 012456899999
Q ss_pred CCCCcee-ccCCCCCcce-------eeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEe
Q 017349 154 ATTNQWQ-LASPMLTPRS-------FFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTT 210 (373)
Q Consensus 154 ~~t~~W~-~~~~~~~~r~-------~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~ 210 (373)
+.|.+-. +++..+.||. .+++..-+..+|+. .....+.+-+.|..+++-..
T Consensus 84 ~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~------n~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 84 PQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFY------QFSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEe------cCCCCCEEEEEECCCCcEEE
Confidence 9999754 3433334441 12222224457765 22235679999999987543
No 173
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=75.52 E-value=39 Score=32.48 Aligned_cols=95 Identities=15% Similarity=0.171 Sum_probs=53.6
Q ss_pred ceeEEEeCCCCceeccCCCCCcceeeeeeEe--CCeEEEEcCCCCCCCCcCceEEEEeCCCCeEE-e------ccCCccc
Q 017349 147 QSTIMYRATTNQWQLASPMLTPRSFFASGNV--NGKIMAVGGTGANINETMTAVECYDPESDTWT-T------AAKLRMG 217 (373)
Q Consensus 147 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~-~------~~~~~~~ 217 (373)
.++|++|...++|-.- +...-....++.+ -+.|+++||.+ ..++.+|+.+.+-- . +...|..
T Consensus 155 ~evYRlNLEqGrfL~P--~~~~~~~lN~v~in~~hgLla~Gt~~-------g~VEfwDpR~ksrv~~l~~~~~v~s~pg~ 225 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNP--FETDSGELNVVSINEEHGLLACGTED-------GVVEFWDPRDKSRVGTLDAASSVNSHPGG 225 (703)
T ss_pred cceEEEEccccccccc--cccccccceeeeecCccceEEecccC-------ceEEEecchhhhhheeeecccccCCCccc
Confidence 3799999999988432 2111112222333 35788889875 46899999876532 1 1122222
Q ss_pred ccc--ccEEEE-CCEEEEEeCccCCCccCCceEEEeCCCCc
Q 017349 218 LAR--YDSAVM-GSKMYVTEGWTWPFMFSPRGGVYDINKDT 255 (373)
Q Consensus 218 ~~~--~~~~~~-~~~lyv~gG~~~~~~~~~~i~~yd~~~~~ 255 (373)
-.. .++..+ ++-|.+.-|.. ...+++||+.+.+
T Consensus 226 ~~~~svTal~F~d~gL~~aVGts-----~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 226 DAAPSVTALKFRDDGLHVAVGTS-----TGSVLIYDLRASK 261 (703)
T ss_pred cccCcceEEEecCCceeEEeecc-----CCcEEEEEcccCC
Confidence 111 223333 44566655543 2578999997765
No 174
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=75.27 E-value=60 Score=30.73 Aligned_cols=89 Identities=12% Similarity=0.132 Sum_probs=47.0
Q ss_pred eEEEEeCCCCe----EEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEE
Q 017349 197 AVECYDPESDT----WTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISI 272 (373)
Q Consensus 197 ~~~~yd~~t~~----W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~ 272 (373)
.+..||..... |.+...-|. .+-+....+..|++.-|++ ..|+.||..+..=+..-. ...+....+.
T Consensus 188 ~VtlwDv~g~sp~~~~~~~HsAP~--~gicfspsne~l~vsVG~D------kki~~yD~~s~~s~~~l~-y~~Plstvaf 258 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHSAPC--RGICFSPSNEALLVSVGYD------KKINIYDIRSQASTDRLT-YSHPLSTVAF 258 (673)
T ss_pred eEEEEeccCCCcccchhhhccCCc--CcceecCCccceEEEeccc------ceEEEeecccccccceee-ecCCcceeee
Confidence 35666665442 444433332 1111223377888888887 789999998765433211 1111221112
Q ss_pred EECCeEEEEeeCCCcceEEEeCC
Q 017349 273 VLEGKLFVISEHGDCPMKQYNPD 295 (373)
Q Consensus 273 ~~~~~l~v~gg~~~~~~~~yd~~ 295 (373)
.-+|.++++ |...+.+..||+.
T Consensus 259 ~~~G~~L~a-G~s~G~~i~YD~R 280 (673)
T KOG4378|consen 259 SECGTYLCA-GNSKGELIAYDMR 280 (673)
T ss_pred cCCceEEEe-ecCCceEEEEecc
Confidence 223444444 4457788888875
No 175
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=74.82 E-value=54 Score=28.13 Aligned_cols=180 Identities=11% Similarity=0.073 Sum_probs=87.8
Q ss_pred ceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcce
Q 017349 91 RIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRS 170 (373)
Q Consensus 91 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~ 170 (373)
...+..||..++.=..+....... ....++.+-.+|+-...||.++ .+-++|...-.-++.-..+.|..
T Consensus 60 ~qhvRlyD~~S~np~Pv~t~e~h~----kNVtaVgF~~dgrWMyTgseDg-------t~kIWdlR~~~~qR~~~~~spVn 128 (311)
T KOG0315|consen 60 NQHVRLYDLNSNNPNPVATFEGHT----KNVTAVGFQCDGRWMYTGSEDG-------TVKIWDLRSLSCQRNYQHNSPVN 128 (311)
T ss_pred CCeeEEEEccCCCCCceeEEeccC----CceEEEEEeecCeEEEecCCCc-------eEEEEeccCcccchhccCCCCcc
Confidence 345778999887544333332111 3344444445788888887632 56777776533333222222211
Q ss_pred eeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCcccc-ccccEEEE-CCEEEEEeCccCCCccCCceEE
Q 017349 171 FFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGL-ARYDSAVM-GSKMYVTEGWTWPFMFSPRGGV 248 (373)
Q Consensus 171 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~-~~~~~~~~-~~~lyv~gG~~~~~~~~~~i~~ 248 (373)
. ++..-++--++.|-. .-.+.++|..++...... +|..- +-.++++. +|++.+.+-.. ...++
T Consensus 129 ~--vvlhpnQteLis~dq------sg~irvWDl~~~~c~~~l-iPe~~~~i~sl~v~~dgsml~a~nnk------G~cyv 193 (311)
T KOG0315|consen 129 T--VVLHPNQTELISGDQ------SGNIRVWDLGENSCTHEL-IPEDDTSIQSLTVMPDGSMLAAANNK------GNCYV 193 (311)
T ss_pred e--EEecCCcceEEeecC------CCcEEEEEccCCcccccc-CCCCCcceeeEEEcCCCcEEEEecCC------ccEEE
Confidence 1 111222222333322 235899999998654321 22221 22223333 66655443322 46788
Q ss_pred EeCCCCcee-ecccC--ccC-CcceEEEEE--CCeEEEEeeCCCcceEEEeCCCC
Q 017349 249 YDINKDTWN-LMSDG--MKE-GWTGISIVL--EGKLFVISEHGDCPMKQYNPDDD 297 (373)
Q Consensus 249 yd~~~~~W~-~~~~~--~~~-~~~~~~~~~--~~~l~v~gg~~~~~~~~yd~~~~ 297 (373)
+++-++.-. ++.+. .+. .++...+.+ ++|.+...+. ...+.+|+.++.
T Consensus 194 W~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss-dktv~iwn~~~~ 247 (311)
T KOG0315|consen 194 WRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS-DKTVKIWNTDDF 247 (311)
T ss_pred EEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC-CceEEEEecCCc
Confidence 887765432 22210 111 122222333 6666666554 567888887765
No 176
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=74.34 E-value=92 Score=30.61 Aligned_cols=165 Identities=11% Similarity=0.077 Sum_probs=77.6
Q ss_pred ceeEEEeCCCCceeccCCC--CCcceeeeeeEe-CCeEEEEcCCCCC---CCCcCceEEEEeCCCCe-EEeccCCccccc
Q 017349 147 QSTIMYRATTNQWQLASPM--LTPRSFFASGNV-NGKIMAVGGTGAN---INETMTAVECYDPESDT-WTTAAKLRMGLA 219 (373)
Q Consensus 147 ~~~~~yd~~t~~W~~~~~~--~~~r~~~~~~~~-~~~iyv~GG~~~~---~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~ 219 (373)
..+++||+.. .|...+-+ +..|.--+++.. ++++|-+|+...- .-..+...+.+|+..+. |........ .
T Consensus 47 g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~--~ 123 (691)
T KOG2048|consen 47 GNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN--T 123 (691)
T ss_pred CcEEEEccCC-CceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCcc--c
Confidence 3689999987 56554433 455666666666 7899998876410 01112223333333332 433211000 0
Q ss_pred cccEEEECCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEECCeEE-EEeeCCCcceEEEeCCCCc
Q 017349 220 RYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLF-VISEHGDCPMKQYNPDDDT 298 (373)
Q Consensus 220 ~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~-v~gg~~~~~~~~yd~~~~~ 298 (373)
..+..+.+|.+|.+- ...+.-+.-...+.....-.++..+.... ++||....-|.++|.+.++
T Consensus 124 ~l~IgcddGvl~~~s----------------~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~ 187 (691)
T KOG2048|consen 124 ILAIGCDDGVLYDFS----------------IGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ 187 (691)
T ss_pred eEEeecCCceEEEEe----------------cCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCc
Confidence 011111234444443 33333332222222212223355666655 7777655668888887765
Q ss_pred eeeecCCCCCCc---ccccceEEEEeCCEEEEEeC
Q 017349 299 WRYVGGDKFPCE---VMHRPFAVNGVEGKIYVVSS 330 (373)
Q Consensus 299 W~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~GG 330 (373)
=..+..|..-+- ......++..+.+..++-|-
T Consensus 188 t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgD 222 (691)
T KOG2048|consen 188 TLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGD 222 (691)
T ss_pred eEEEeeecccccccCCceEEEEEEEeecCcEEEec
Confidence 443322222211 11233555555665555554
No 177
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=73.61 E-value=75 Score=29.28 Aligned_cols=134 Identities=13% Similarity=0.030 Sum_probs=70.3
Q ss_pred cceeEEEeCCCCc-eeccCCCCCcceeeeeeEe---CCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccc
Q 017349 146 MQSTIMYRATTNQ-WQLASPMLTPRSFFASGNV---NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARY 221 (373)
Q Consensus 146 ~~~~~~yd~~t~~-W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~ 221 (373)
.+.+.+.|..+++ -.+++... ..|....+ +.++|+.+. + ..+-++|+.+++ .+...+......
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~s~Dgr~~yv~~r-d-------g~vsviD~~~~~--~v~~i~~G~~~~ 81 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGG---APHAGLKFSPDGRYLYVANR-D-------GTVSVIDLATGK--VVATIKVGGNPR 81 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-ST---TEEEEEE-TT-SSEEEEEET-T-------SEEEEEETTSSS--EEEEEE-SSEEE
T ss_pred CCEEEEEECCCCeEEEEEcCCC---CceeEEEecCCCCEEEEEcC-C-------CeEEEEECCccc--EEEEEecCCCcc
Confidence 4578899988875 23333322 22433322 457888753 2 258899999987 344444444333
Q ss_pred cEEE-ECCEEEEEeCccCCCccCCceEEEeCCCCce-eeccc---Cc--cCCcceEE-EEECCeEEEEeeCCCcceEEEe
Q 017349 222 DSAV-MGSKMYVTEGWTWPFMFSPRGGVYDINKDTW-NLMSD---GM--KEGWTGIS-IVLEGKLFVISEHGDCPMKQYN 293 (373)
Q Consensus 222 ~~~~-~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W-~~~~~---~~--~~~~~~~~-~~~~~~l~v~gg~~~~~~~~yd 293 (373)
+.++ -+|+..+++.+. .+.+.++|.++.+= ..++. +. +..+..+. ....+..|++.-.+...++..|
T Consensus 82 ~i~~s~DG~~~~v~n~~-----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYE-----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp EEEE--TTTEEEEEEEE-----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred eEEEcCCCCEEEEEecC-----CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 4433 477755555443 26788999988653 23322 11 12232222 2335666777655567899888
Q ss_pred CCCC
Q 017349 294 PDDD 297 (373)
Q Consensus 294 ~~~~ 297 (373)
....
T Consensus 157 y~d~ 160 (369)
T PF02239_consen 157 YSDP 160 (369)
T ss_dssp TTTS
T ss_pred eccc
Confidence 7654
No 178
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=73.59 E-value=57 Score=27.87 Aligned_cols=165 Identities=12% Similarity=0.133 Sum_probs=81.0
Q ss_pred CeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEeC-CeE
Q 017349 103 RWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVN-GKI 181 (373)
Q Consensus 103 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~-~~i 181 (373)
.|...+++......-..--+.-.....|.|+..||- . .++..|..+++.++.-.- ...+-|+++.-+ +--
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD---~-----~~y~~dlE~G~i~r~~rG-HtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD---G-----VIYQVDLEDGRIQREYRG-HTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC---e-----EEEEEEecCCEEEEEEcC-CcceeeeeeecccCcc
Confidence 366665554211001122233444457889988873 2 689999999987665321 234455555532 222
Q ss_pred EEEcCCCCCCCCcCceEEEEeCCCCeEEec-cCC-----ccc-cccc-cEEEECCEEEEEeCccCCCccCCceEEEeCCC
Q 017349 182 MAVGGTGANINETMTAVECYDPESDTWTTA-AKL-----RMG-LARY-DSAVMGSKMYVTEGWTWPFMFSPRGGVYDINK 253 (373)
Q Consensus 182 yv~GG~~~~~~~~~~~~~~yd~~t~~W~~~-~~~-----~~~-~~~~-~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~ 253 (373)
.+-|+++ -.+.++|.+|.+-..+ .+- -.| .... .+...+..-.+.||. ..+-.+++.+
T Consensus 171 ilsG~ED-------GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-------p~lslwhLrs 236 (325)
T KOG0649|consen 171 ILSGAED-------GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-------PKLSLWHLRS 236 (325)
T ss_pred eeecCCC-------ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-------CceeEEeccC
Confidence 3345554 2477888888765433 221 111 1111 223334455555553 2455666655
Q ss_pred CceeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEeC
Q 017349 254 DTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNP 294 (373)
Q Consensus 254 ~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~ 294 (373)
.+=+.+- |.|. +. .-+.+.++..+++|. .+.+-.|..
T Consensus 237 se~t~vf-pipa-~v-~~v~F~~d~vl~~G~-g~~v~~~~l 273 (325)
T KOG0649|consen 237 SESTCVF-PIPA-RV-HLVDFVDDCVLIGGE-GNHVQSYTL 273 (325)
T ss_pred CCceEEE-eccc-ce-eEeeeecceEEEecc-ccceeeeee
Confidence 4433221 1222 22 235556666666664 234444433
No 179
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=73.28 E-value=64 Score=28.33 Aligned_cols=206 Identities=13% Similarity=0.155 Sum_probs=102.1
Q ss_pred eEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceec---c-CCCCCc
Q 017349 93 QWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQL---A-SPMLTP 168 (373)
Q Consensus 93 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~---~-~~~~~~ 168 (373)
.+.++|..|..-...-+||.. --++|+.. ..+....+||.+ +.+-+|+..++.=.. + ..++-.
T Consensus 78 klIvWDs~TtnK~haipl~s~-----WVMtCA~s-PSg~~VAcGGLd-------N~Csiy~ls~~d~~g~~~v~r~l~gH 144 (343)
T KOG0286|consen 78 KLIVWDSFTTNKVHAIPLPSS-----WVMTCAYS-PSGNFVACGGLD-------NKCSIYPLSTRDAEGNVRVSRELAGH 144 (343)
T ss_pred eEEEEEcccccceeEEecCce-----eEEEEEEC-CCCCeEEecCcC-------ceeEEEecccccccccceeeeeecCc
Confidence 356677655433444456621 33455444 478888899983 256778877552221 1 223333
Q ss_pred ceeeeeeEe--CCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccE---EEECCEEEEEeCccCCCccC
Q 017349 169 RSFFASGNV--NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDS---AVMGSKMYVTEGWTWPFMFS 243 (373)
Q Consensus 169 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~---~~~~~~lyv~gG~~~~~~~~ 243 (373)
..+.+.+.+ +++|.--.|- .....+|.++.+=... +...-....+ ...+++.|+.||.+
T Consensus 145 tgylScC~f~dD~~ilT~SGD--------~TCalWDie~g~~~~~--f~GH~gDV~slsl~p~~~ntFvSg~cD------ 208 (343)
T KOG0286|consen 145 TGYLSCCRFLDDNHILTGSGD--------MTCALWDIETGQQTQV--FHGHTGDVMSLSLSPSDGNTFVSGGCD------ 208 (343)
T ss_pred cceeEEEEEcCCCceEecCCC--------ceEEEEEcccceEEEE--ecCCcccEEEEecCCCCCCeEEecccc------
Confidence 444444443 4454443332 2466778877753221 1111000001 11277899999987
Q ss_pred CceEEEeCCCCceeecccCccCCcceEEEE-ECCeEEEEeeCCCcceEEEeCCCCceeeecCCCCCCcccccceEEEEeC
Q 017349 244 PRGGVYDINKDTWNLMSDGMKEGWTGISIV-LEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVE 322 (373)
Q Consensus 244 ~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~-~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 322 (373)
.....+|..++.=.+.= +-...-..+... -+|.-+..|. +......||+..++=..+=+ +.+ ...--....+...
T Consensus 209 ~~aklWD~R~~~c~qtF-~ghesDINsv~ffP~G~afatGS-DD~tcRlyDlRaD~~~a~ys-~~~-~~~gitSv~FS~S 284 (343)
T KOG0286|consen 209 KSAKLWDVRSGQCVQTF-EGHESDINSVRFFPSGDAFATGS-DDATCRLYDLRADQELAVYS-HDS-IICGITSVAFSKS 284 (343)
T ss_pred cceeeeeccCcceeEee-cccccccceEEEccCCCeeeecC-CCceeEEEeecCCcEEeeec-cCc-ccCCceeEEEccc
Confidence 56677777766321110 001111111122 2555555554 46778889998764333321 111 1111112234567
Q ss_pred CEEEEEeCC
Q 017349 323 GKIYVVSSG 331 (373)
Q Consensus 323 ~~l~i~GG~ 331 (373)
|+|+..|..
T Consensus 285 GRlLfagy~ 293 (343)
T KOG0286|consen 285 GRLLFAGYD 293 (343)
T ss_pred ccEEEeeec
Confidence 999988863
No 180
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=72.94 E-value=76 Score=29.02 Aligned_cols=83 Identities=8% Similarity=0.030 Sum_probs=46.4
Q ss_pred ccCCCCEEEEEEe-----cCCCCceeEEEeeCCCCCeeeCCCCCCCCCC--CCCceEEEEeccCCEEEEEcCccCCCCCC
Q 017349 73 LSLSLPYLFIFSF-----HKPTARIQWQALDPRSGRWFVLPPMPCPKAV--CPQAFACTSLPRQGKLFVLGGMRSDTETP 145 (373)
Q Consensus 73 ~~~~~~~l~~~gg-----~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~v~GG~~~~~~~~ 145 (373)
++..+..||+... ..+.....+.+||+.+.+-..--++|..++. .......+....+..+|+.. ...
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n------~~p 126 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ------FSP 126 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEec------CCC
Confidence 4556778888765 1222445689999999876543333311110 00111222222245677762 133
Q ss_pred cceeEEEeCCCCceec
Q 017349 146 MQSTIMYRATTNQWQL 161 (373)
Q Consensus 146 ~~~~~~yd~~t~~W~~ 161 (373)
.+.+-+.|..+++-..
T Consensus 127 ~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 127 SPAVGVVDLEGKAFVR 142 (352)
T ss_pred CCEEEEEECCCCcEEE
Confidence 5689999999987543
No 181
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=72.86 E-value=66 Score=28.27 Aligned_cols=135 Identities=15% Similarity=0.180 Sum_probs=65.8
Q ss_pred eeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEec----cCCccccccccE
Q 017349 148 STIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTA----AKLRMGLARYDS 223 (373)
Q Consensus 148 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~----~~~~~~~~~~~~ 223 (373)
.+.+||..|..=...=+||.......+..-.+.....||.+ +..-+|+..+..=+.. ..++....+.+.
T Consensus 78 klIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLd-------N~Csiy~ls~~d~~g~~~v~r~l~gHtgylSc 150 (343)
T KOG0286|consen 78 KLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLD-------NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSC 150 (343)
T ss_pred eEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcC-------ceeEEEecccccccccceeeeeecCccceeEE
Confidence 45555554432222223433322222222367888999987 4566787775532222 233443344444
Q ss_pred EEE--CCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEE-EECCeEEEEeeCCCcceEEEeCCCC
Q 017349 224 AVM--GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISI-VLEGKLFVISEHGDCPMKQYNPDDD 297 (373)
Q Consensus 224 ~~~--~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~~l~v~gg~~~~~~~~yd~~~~ 297 (373)
+.+ ++.|..-.|. .....+|.++++=...-.....--..... -.+++.||-||. ......+|....
T Consensus 151 C~f~dD~~ilT~SGD-------~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c-D~~aklWD~R~~ 219 (343)
T KOG0286|consen 151 CRFLDDNHILTGSGD-------MTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC-DKSAKLWDVRSG 219 (343)
T ss_pred EEEcCCCceEecCCC-------ceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccc-ccceeeeeccCc
Confidence 433 4555444343 46788899888643321101000011111 127888888886 344555665544
No 182
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=72.34 E-value=72 Score=29.97 Aligned_cols=105 Identities=13% Similarity=0.174 Sum_probs=53.1
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeee-eeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCe
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFA-SGNVNGKIMAVGGTGANINETMTAVECYDPESDT 207 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~ 207 (373)
.++|++.||.+. .+++||.-...=..-.-+.....--. .-.-.+.-++-.|.+ ..+-.+|.+|++
T Consensus 226 ~~hLlLS~gmD~-------~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD-------~~lKlwDtETG~ 291 (503)
T KOG0282|consen 226 KGHLLLSGGMDG-------LVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFD-------RFLKLWDTETGQ 291 (503)
T ss_pred eeeEEEecCCCc-------eEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecc-------eeeeeeccccce
Confidence 578888888732 56666655422111111111110000 111234445555554 346677888886
Q ss_pred EEeccCCccccccccEEEE---CCEEEEEeCccCCCccCCceEEEeCCCCce
Q 017349 208 WTTAAKLRMGLARYDSAVM---GSKMYVTEGWTWPFMFSPRGGVYDINKDTW 256 (373)
Q Consensus 208 W~~~~~~~~~~~~~~~~~~---~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W 256 (373)
-..- +.... -..++-. +..++++||.+ ..|..||+.+++.
T Consensus 292 ~~~~--f~~~~-~~~cvkf~pd~~n~fl~G~sd------~ki~~wDiRs~kv 334 (503)
T KOG0282|consen 292 VLSR--FHLDK-VPTCVKFHPDNQNIFLVGGSD------KKIRQWDIRSGKV 334 (503)
T ss_pred EEEE--EecCC-CceeeecCCCCCcEEEEecCC------CcEEEEeccchHH
Confidence 4322 11110 0111111 34899999987 6889999988864
No 183
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.09 E-value=79 Score=28.87 Aligned_cols=146 Identities=11% Similarity=0.089 Sum_probs=75.0
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCCCC--ceeccCC------CCCcceeeeeeEeCC---eEEEEcCCCCCCCCcCce
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRATTN--QWQLASP------MLTPRSFFASGNVNG---KIMAVGGTGANINETMTA 197 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~t~--~W~~~~~------~~~~r~~~~~~~~~~---~iyv~GG~~~~~~~~~~~ 197 (373)
..+|+.+||. ...+.+.+||..+. .|+.... |..|.....+.++.+ .-++-+- ....
T Consensus 160 ~p~Iva~GGk-----e~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T-------~~hq 227 (412)
T KOG3881|consen 160 DPYIVATGGK-----ENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATIT-------RYHQ 227 (412)
T ss_pred CCceEecCch-----hcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEe-------ccee
Confidence 5678888997 33456777776654 5765432 224444444555433 2222211 1346
Q ss_pred EEEEeCCCCeEEeccCCc---cccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceE---E
Q 017349 198 VECYDPESDTWTTAAKLR---MGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGI---S 271 (373)
Q Consensus 198 ~~~yd~~t~~W~~~~~~~---~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~---~ 271 (373)
+..||+..+. +.+..++ .+.... +-..++.+..+|-.. ..+..||..+++=--..- .+..++ .
T Consensus 228 vR~YDt~~qR-RPV~~fd~~E~~is~~-~l~p~gn~Iy~gn~~------g~l~~FD~r~~kl~g~~~---kg~tGsirsi 296 (412)
T KOG3881|consen 228 VRLYDTRHQR-RPVAQFDFLENPISST-GLTPSGNFIYTGNTK------GQLAKFDLRGGKLLGCGL---KGITGSIRSI 296 (412)
T ss_pred EEEecCcccC-cceeEeccccCcceee-eecCCCcEEEEeccc------chhheecccCceeecccc---CCccCCcceE
Confidence 8899998664 3333222 222221 222244444444332 467889998776322211 111111 1
Q ss_pred EEECC-eEEEEeeCCCcceEEEeCCCCc
Q 017349 272 IVLEG-KLFVISEHGDCPMKQYNPDDDT 298 (373)
Q Consensus 272 ~~~~~-~l~v~gg~~~~~~~~yd~~~~~ 298 (373)
.++.+ .+...+|. ...+.+||.++++
T Consensus 297 h~hp~~~~las~GL-DRyvRIhD~ktrk 323 (412)
T KOG3881|consen 297 HCHPTHPVLASCGL-DRYVRIHDIKTRK 323 (412)
T ss_pred EEcCCCceEEeecc-ceeEEEeecccch
Confidence 33444 45555665 5678889988753
No 184
>PRK01742 tolB translocation protein TolB; Provisional
Probab=71.13 E-value=93 Score=29.28 Aligned_cols=162 Identities=13% Similarity=0.042 Sum_probs=77.0
Q ss_pred ceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCE-EEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcc
Q 017349 91 RIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGK-LFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPR 169 (373)
Q Consensus 91 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r 169 (373)
..+++.+|..+..-..+...+. +.. ......+++ |++..... ...++|.+|..++..+++..-....
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g------~~~-~~~wSPDG~~La~~~~~~-----g~~~Iy~~d~~~~~~~~lt~~~~~~ 294 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRG------HNG-APAFSPDGSRLAFASSKD-----GVLNIYVMGANGGTPSQLTSGAGNN 294 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCC------ccC-ceeECCCCCEEEEEEecC-----CcEEEEEEECCCCCeEeeccCCCCc
Confidence 4567888888776555544431 111 223333554 44433221 1236899999888766654322111
Q ss_pred eeeeeeEeCC-eEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEECCE-EEEEeCccCCCccCCceE
Q 017349 170 SFFASGNVNG-KIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSK-MYVTEGWTWPFMFSPRGG 247 (373)
Q Consensus 170 ~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~-lyv~gG~~~~~~~~~~i~ 247 (373)
... ...-++ +|+.....+ ....++.++..++.-+.+.. ... .....-+|+ |++.++ ..+.
T Consensus 295 ~~~-~wSpDG~~i~f~s~~~-----g~~~I~~~~~~~~~~~~l~~---~~~-~~~~SpDG~~ia~~~~--------~~i~ 356 (429)
T PRK01742 295 TEP-SWSPDGQSILFTSDRS-----GSPQVYRMSASGGGASLVGG---RGY-SAQISADGKTLVMING--------DNVV 356 (429)
T ss_pred CCE-EECCCCCEEEEEECCC-----CCceEEEEECCCCCeEEecC---CCC-CccCCCCCCEEEEEcC--------CCEE
Confidence 111 111244 455443322 12356777766554333311 111 111222554 444433 3577
Q ss_pred EEeCCCCceeecccCccCCcceEEEEECCeEEEEeeC
Q 017349 248 VYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEH 284 (373)
Q Consensus 248 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~ 284 (373)
.+|+.++.++.+.... . .......-+++.+++++.
T Consensus 357 ~~Dl~~g~~~~lt~~~-~-~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 357 KQDLTSGSTEVLSSTF-L-DESPSISPNGIMIIYSST 391 (429)
T ss_pred EEECCCCCeEEecCCC-C-CCCceECCCCCEEEEEEc
Confidence 8999999887654321 1 111223336666666543
No 185
>PF13013 F-box-like_2: F-box-like domain
Probab=69.59 E-value=4.5 Score=29.78 Aligned_cols=30 Identities=17% Similarity=0.080 Sum_probs=24.2
Q ss_pred CCCCCChHHHHHhhccCCccchhhhhhhcH
Q 017349 26 LIPGLPDEIGELCLLHVPYPYQALVRSVSY 55 (373)
Q Consensus 26 ~~~~LP~dl~~~il~rlp~~~l~~~~~v~k 55 (373)
.+..||+||+..|+..-....+......|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 488899999999999888777766665565
No 186
>PTZ00420 coronin; Provisional
Probab=69.43 E-value=1.2e+02 Score=29.86 Aligned_cols=137 Identities=8% Similarity=0.045 Sum_probs=65.2
Q ss_pred eEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCC--C-cc
Q 017349 93 QWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPML--T-PR 169 (373)
Q Consensus 93 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~--~-~r 169 (373)
.+.++|..+..-.. .+..+ ....+.....++.+++.++.+ ..+.+||+.+++-. ..+. . .+
T Consensus 149 tIrIWDl~tg~~~~--~i~~~-----~~V~SlswspdG~lLat~s~D-------~~IrIwD~Rsg~~i--~tl~gH~g~~ 212 (568)
T PTZ00420 149 FVNIWDIENEKRAF--QINMP-----KKLSSLKWNIKGNLLSGTCVG-------KHMHIIDPRKQEIA--SSFHIHDGGK 212 (568)
T ss_pred eEEEEECCCCcEEE--EEecC-----CcEEEEEECCCCCEEEEEecC-------CEEEEEECCCCcEE--EEEecccCCc
Confidence 46778887664211 11111 123333444477777776542 26899999876422 1111 1 11
Q ss_pred eeeeee--E--eCCeEEEEcCCCCCCCCcCceEEEEeCCC-CeEEeccCCccccccccE-EEE---CCEEEEEeCccCCC
Q 017349 170 SFFASG--N--VNGKIMAVGGTGANINETMTAVECYDPES-DTWTTAAKLRMGLARYDS-AVM---GSKMYVTEGWTWPF 240 (373)
Q Consensus 170 ~~~~~~--~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~t-~~W~~~~~~~~~~~~~~~-~~~---~~~lyv~gG~~~~~ 240 (373)
...... . .++..++.+|.+ ......+.+||..+ ..-...-.+.. ..... -.. .+.+|+.|..+
T Consensus 213 ~s~~v~~~~fs~d~~~IlTtG~d---~~~~R~VkLWDlr~~~~pl~~~~ld~--~~~~L~p~~D~~tg~l~lsGkGD--- 284 (568)
T PTZ00420 213 NTKNIWIDGLGGDDNYILSTGFS---KNNMREMKLWDLKNTTSALVTMSIDN--ASAPLIPHYDESTGLIYLIGKGD--- 284 (568)
T ss_pred eeEEEEeeeEcCCCCEEEEEEcC---CCCccEEEEEECCCCCCceEEEEecC--CccceEEeeeCCCCCEEEEEECC---
Confidence 111111 1 234555555553 12234688999874 22111101111 00111 111 47788887554
Q ss_pred ccCCceEEEeCCCCce
Q 017349 241 MFSPRGGVYDINKDTW 256 (373)
Q Consensus 241 ~~~~~i~~yd~~~~~W 256 (373)
..+..|+...+.-
T Consensus 285 ---~tIr~~e~~~~~~ 297 (568)
T PTZ00420 285 ---GNCRYYQHSLGSI 297 (568)
T ss_pred ---CeEEEEEccCCcE
Confidence 5788888876643
No 187
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=69.04 E-value=52 Score=31.70 Aligned_cols=114 Identities=9% Similarity=0.048 Sum_probs=63.0
Q ss_pred cceeeeeeE--eCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEE--CCEEEEEeCccCCCccC
Q 017349 168 PRSFFASGN--VNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVM--GSKMYVTEGWTWPFMFS 243 (373)
Q Consensus 168 ~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~~~lyv~gG~~~~~~~~ 243 (373)
|+.+..++. ..-.||+.|.- .+++++|++.+.|-. ++.......-++.+ -..|+.+|+.+
T Consensus 133 P~~GRDm~y~~~scDly~~gsg--------~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~~------ 196 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGSG--------SEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTED------ 196 (703)
T ss_pred CcCCccccccCCCccEEEeecC--------cceEEEEcccccccc--ccccccccceeeeecCccceEEecccC------
Confidence 444433333 23457776543 369999999998842 22222122222333 34577788766
Q ss_pred CceEEEeCCCCcee-ecc--cC---ccCC---cceEEEEEC-CeEEEEeeCCCcceEEEeCCCC
Q 017349 244 PRGGVYDINKDTWN-LMS--DG---MKEG---WTGISIVLE-GKLFVISEHGDCPMKQYNPDDD 297 (373)
Q Consensus 244 ~~i~~yd~~~~~W~-~~~--~~---~~~~---~~~~~~~~~-~~l~v~gg~~~~~~~~yd~~~~ 297 (373)
..++.+|+.+.+-. .+. .. .+.. ..-.+..+. +-|-+.-|...+.++.||+.+.
T Consensus 197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 57889998766532 111 10 1111 111223444 4777776777888889988654
No 188
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=68.76 E-value=97 Score=28.55 Aligned_cols=244 Identities=12% Similarity=0.074 Sum_probs=115.9
Q ss_pred CCEEEEEEecCCCCceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEecc-CCEEEEEcCccCCCCCCcceeEEEeCC
Q 017349 77 LPYLFIFSFHKPTARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPR-QGKLFVLGGMRSDTETPMQSTIMYRAT 155 (373)
Q Consensus 77 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~yd~~ 155 (373)
++.+|+.. .....+.+.|..+++-.. .++... ..|+....+. +.++|+.+. + ..+-++|+.
T Consensus 5 ~~l~~V~~----~~~~~v~viD~~t~~~~~--~i~~~~----~~h~~~~~s~Dgr~~yv~~r---d-----g~vsviD~~ 66 (369)
T PF02239_consen 5 GNLFYVVE----RGSGSVAVIDGATNKVVA--RIPTGG----APHAGLKFSPDGRYLYVANR---D-----GTVSVIDLA 66 (369)
T ss_dssp GGEEEEEE----GGGTEEEEEETTT-SEEE--EEE-ST----TEEEEEE-TT-SSEEEEEET---T-----SEEEEEETT
T ss_pred ccEEEEEe----cCCCEEEEEECCCCeEEE--EEcCCC----CceeEEEecCCCCEEEEEcC---C-----CeEEEEECC
Confidence 34455553 234568889998876433 222111 2244444443 567998752 2 268999999
Q ss_pred CCceeccCCCCCcceeeeeeE-eCCeEEEEcCCCCCCCCcCceEEEEeCCCCeE-Eecc--CCcc--ccccccEE--EEC
Q 017349 156 TNQWQLASPMLTPRSFFASGN-VNGKIMAVGGTGANINETMTAVECYDPESDTW-TTAA--KLRM--GLARYDSA--VMG 227 (373)
Q Consensus 156 t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W-~~~~--~~~~--~~~~~~~~--~~~ 227 (373)
+++ .+...+......+++. -+++..+++... .+.+.++|.+|.+= +.++ .++. ...+.++. ...
T Consensus 67 ~~~--~v~~i~~G~~~~~i~~s~DG~~~~v~n~~------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~ 138 (369)
T PF02239_consen 67 TGK--VVATIKVGGNPRGIAVSPDGKYVYVANYE------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPG 138 (369)
T ss_dssp SSS--EEEEEE-SSEEEEEEE--TTTEEEEEEEE------TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SS
T ss_pred ccc--EEEEEecCCCcceEEEcCCCCEEEEEecC------CCceeEeccccccceeecccccccccccCCCceeEEecCC
Confidence 987 3444444444445444 355544444432 35788999888653 2332 2222 11111222 224
Q ss_pred CEEEEEeCccCCCccCCceEEEeCCCCceeeccc-CccCCcceEEEEECCeEEEEeeCCCcceEEEeCCCCceeeecC--
Q 017349 228 SKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD-GMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGG-- 304 (373)
Q Consensus 228 ~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~-- 304 (373)
+..|++.-.+ ...++..|.....=..... ......+....--+++.|+++-...+.+-+.|.++++-..+-.
T Consensus 139 ~~~fVv~lkd-----~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g 213 (369)
T PF02239_consen 139 RPEFVVNLKD-----TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTG 213 (369)
T ss_dssp SSEEEEEETT-----TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S
T ss_pred CCEEEEEEcc-----CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecc
Confidence 4456654332 2567777866542111111 1222223333344567666665556788999998875554321
Q ss_pred -CCCCCcccccceEEEEeC-CEEEEEeCCceeeeeEEEE-eecCCcccceEEec
Q 017349 305 -DKFPCEVMHRPFAVNGVE-GKIYVVSSGLNVAIGRVYE-EQNGGISAEWKVMT 355 (373)
Q Consensus 305 -~~~~~~~~~~~~~~~~~~-~~l~i~GG~~~~~~~~~~~-~~~d~~~~~W~~~~ 355 (373)
.|.| .....+...+ |.++..+|.....+..+-. ...=-....|+.+.
T Consensus 214 ~~p~~----~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~ 263 (369)
T PF02239_consen 214 KKPHP----GPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVK 263 (369)
T ss_dssp SSBEE----TTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEE
T ss_pred ccccc----cccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEE
Confidence 2222 3334444433 4566666643333222222 11112346677543
No 189
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=68.45 E-value=1.1e+02 Score=29.09 Aligned_cols=138 Identities=9% Similarity=0.137 Sum_probs=71.0
Q ss_pred eEEEeeCCCC-CeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCC-cce
Q 017349 93 QWQALDPRSG-RWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLT-PRS 170 (373)
Q Consensus 93 ~~~~~d~~~~-~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-~r~ 170 (373)
.+.++|.... .-..++.++|-.+. ...-.+-+..+++-+|+||. ...+-+||..+-+=+-...++. +-.
T Consensus 441 cVKVWdis~pg~k~PvsqLdcl~rd--nyiRSckL~pdgrtLivGGe-------astlsiWDLAapTprikaeltssapa 511 (705)
T KOG0639|consen 441 CVKVWDISQPGNKSPVSQLDCLNRD--NYIRSCKLLPDGRTLIVGGE-------ASTLSIWDLAAPTPRIKAELTSSAPA 511 (705)
T ss_pred eEEEeeccCCCCCCccccccccCcc--cceeeeEecCCCceEEeccc-------cceeeeeeccCCCcchhhhcCCcchh
Confidence 3556665432 12333445543211 22334444458999999996 3368889988776544444442 222
Q ss_pred eeeeeE-eCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEE--CCEEEEEeCccCCCccCCceE
Q 017349 171 FFASGN-VNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVM--GSKMYVTEGWTWPFMFSPRGG 247 (373)
Q Consensus 171 ~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~i~ 247 (373)
..+++. -+.++ +|.-+. --.+.+||+...+- +..++....+.++..+ +|.=...||.+ +.+-
T Consensus 512 CyALa~spDakv-cFsccs------dGnI~vwDLhnq~~--VrqfqGhtDGascIdis~dGtklWTGGlD------ntvR 576 (705)
T KOG0639|consen 512 CYALAISPDAKV-CFSCCS------DGNIAVWDLHNQTL--VRQFQGHTDGASCIDISKDGTKLWTGGLD------NTVR 576 (705)
T ss_pred hhhhhcCCccce-eeeecc------CCcEEEEEccccee--eecccCCCCCceeEEecCCCceeecCCCc------ccee
Confidence 333333 34443 333332 12377888877642 2334443344444444 46666678876 4555
Q ss_pred EEeCCCC
Q 017349 248 VYDINKD 254 (373)
Q Consensus 248 ~yd~~~~ 254 (373)
++|+.++
T Consensus 577 cWDlreg 583 (705)
T KOG0639|consen 577 CWDLREG 583 (705)
T ss_pred ehhhhhh
Confidence 5555443
No 190
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=67.67 E-value=33 Score=26.31 Aligned_cols=65 Identities=11% Similarity=0.248 Sum_probs=38.3
Q ss_pred EEEEEeCccCCCccCCceEEEeCCCCc---eeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEeCCCC--ceeee
Q 017349 229 KMYVTEGWTWPFMFSPRGGVYDINKDT---WNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDD--TWRYV 302 (373)
Q Consensus 229 ~lyv~gG~~~~~~~~~~i~~yd~~~~~---W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~--~W~~~ 302 (373)
.+.++|-. +.+.+||...++ ++++++....-..+........+.++||.. .+.-||.+.+ -|+..
T Consensus 65 D~LliGt~-------t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGnc--si~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 65 DCLLIGTQ-------TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNC--SIQGFDYEGNEIFWTVT 134 (136)
T ss_pred CEEEEecc-------ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceE--EEEEeCCCCcEEEEEec
Confidence 46667654 589999999886 455543111000000011246788999865 8888888654 46653
No 191
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=67.22 E-value=1.3e+02 Score=29.56 Aligned_cols=133 Identities=6% Similarity=-0.027 Sum_probs=62.4
Q ss_pred EEECCEEE-EEeCccCCCccCCceEEEeCCCCceeeccc--C--ccCCc---ceEEEEECCeEEEEeeCCCcceEEEeCC
Q 017349 224 AVMGSKMY-VTEGWTWPFMFSPRGGVYDINKDTWNLMSD--G--MKEGW---TGISIVLEGKLFVISEHGDCPMKQYNPD 295 (373)
Q Consensus 224 ~~~~~~ly-v~gG~~~~~~~~~~i~~yd~~~~~W~~~~~--~--~~~~~---~~~~~~~~~~l~v~gg~~~~~~~~yd~~ 295 (373)
...+.... ++||..+ ..|-++|..++.=-.+.. . ...+. .-+...+.+..++. |...+.+..+|.+
T Consensus 160 lsw~~~~~~i~~Gs~D-----g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~s-gDS~G~V~FWd~~ 233 (691)
T KOG2048|consen 160 LSWNPTGTKIAGGSID-----GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIAS-GDSAGTVTFWDSI 233 (691)
T ss_pred EEecCCccEEEecccC-----ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEE-ecCCceEEEEccc
Confidence 33344433 5666542 246777877765333211 0 11111 11112344444444 3446788889988
Q ss_pred CCceeeecCCCCCCcccccceEEEEeCC-EEEEEeCCceeeeeEEEEeecCCcccceEEecC----CCCcCcceeeeeEE
Q 017349 296 DDTWRYVGGDKFPCEVMHRPFAVNGVEG-KIYVVSSGLNVAIGRVYEEQNGGISAEWKVMTA----PRAFKDLAPSSCQV 370 (373)
Q Consensus 296 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~l~i~GG~~~~~~~~~~~~~~d~~~~~W~~~~~----p~~~~~~~~~~~~~ 370 (373)
..+-.+=-..-. -...++++-++ .-++.+| ...++......+.+.+|..... +.+++...+..|++
T Consensus 234 ~gTLiqS~~~h~-----adVl~Lav~~~~d~vfsaG----vd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l 304 (691)
T KOG2048|consen 234 FGTLIQSHSCHD-----ADVLALAVADNEDRVFSAG----VDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENAL 304 (691)
T ss_pred Ccchhhhhhhhh-----cceeEEEEcCCCCeEEEcc----CCCceEEEEecCCccceeeeccccCCcccceeeeeecceE
Confidence 764433211111 12234443333 3333344 3445555445566667986644 45555555555544
Q ss_pred e
Q 017349 371 V 371 (373)
Q Consensus 371 ~ 371 (373)
.
T Consensus 305 ~ 305 (691)
T KOG2048|consen 305 I 305 (691)
T ss_pred E
Confidence 3
No 192
>PRK10115 protease 2; Provisional
Probab=66.86 E-value=1.5e+02 Score=30.03 Aligned_cols=149 Identities=9% Similarity=-0.039 Sum_probs=75.9
Q ss_pred cceeEEEeCCCCcee--ccCCCCCcceeeeeeEe-CCeEEEEcCCCCCCCCcCceEEEEeC--CCCeEEeccCCcccccc
Q 017349 146 MQSTIMYRATTNQWQ--LASPMLTPRSFFASGNV-NGKIMAVGGTGANINETMTAVECYDP--ESDTWTTAAKLRMGLAR 220 (373)
Q Consensus 146 ~~~~~~yd~~t~~W~--~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~--~t~~W~~~~~~~~~~~~ 220 (373)
..++++++..|+.-. .+-.-+........... +++..++...+ ...+.++.|+. .+..|..+.+.+....
T Consensus 198 ~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~- 272 (686)
T PRK10115 198 PYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLAS----ATTSEVLLLDAELADAEPFVFLPRRKDHE- 272 (686)
T ss_pred CCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEEC----CccccEEEEECcCCCCCceEEEECCCCCE-
Confidence 368999999988432 22211112222222222 44433343332 12356777773 3344433322222211
Q ss_pred ccEEEECCEEEEEeCccCCCccCCceEEEeCC-CCceeecccCccCCcceEEEEECCeEEEEeeCC-CcceEEEeCCCCc
Q 017349 221 YDSAVMGSKMYVTEGWTWPFMFSPRGGVYDIN-KDTWNLMSDGMKEGWTGISIVLEGKLFVISEHG-DCPMKQYNPDDDT 298 (373)
Q Consensus 221 ~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~-~~~~~~yd~~~~~ 298 (373)
......++.+|+..-.+ .....+...+.. ++.|+.+-.+............++.|++..-.+ ...++++|..++.
T Consensus 273 ~~~~~~~~~ly~~tn~~---~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~~ 349 (686)
T PRK10115 273 YSLDHYQHRFYLRSNRH---GKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTRE 349 (686)
T ss_pred EEEEeCCCEEEEEEcCC---CCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCCc
Confidence 12233467888876432 223457777776 678988764322222223345688888775433 4568888876655
Q ss_pred eeee
Q 017349 299 WRYV 302 (373)
Q Consensus 299 W~~~ 302 (373)
...+
T Consensus 350 ~~~l 353 (686)
T PRK10115 350 VIGI 353 (686)
T ss_pred eEEe
Confidence 5544
No 193
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=64.00 E-value=36 Score=26.09 Aligned_cols=69 Identities=9% Similarity=0.180 Sum_probs=39.3
Q ss_pred CCeEEEEeeCCCcceEEEeCCCCceeeecCCCCCCcccccceEEEE---eCCEEEEEeCCceeeeeEEEEeecCCcccce
Q 017349 275 EGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNG---VEGKIYVVSSGLNVAIGRVYEEQNGGISAEW 351 (373)
Q Consensus 275 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~W 351 (373)
+..++++|- ...+..||.+.|+=.--..++.. .....+.. ....|.++||+ ....-++ ++.+..-|
T Consensus 63 ~~D~LliGt--~t~llaYDV~~N~d~Fyke~~DG----vn~i~~g~~~~~~~~l~ivGGn---csi~Gfd--~~G~e~fW 131 (136)
T PF14781_consen 63 GRDCLLIGT--QTSLLAYDVENNSDLFYKEVPDG----VNAIVIGKLGDIPSPLVIVGGN---CSIQGFD--YEGNEIFW 131 (136)
T ss_pred CcCEEEEec--cceEEEEEcccCchhhhhhCccc----eeEEEEEecCCCCCcEEEECce---EEEEEeC--CCCcEEEE
Confidence 345777776 44999999988753222222322 11122222 24679999995 3333444 66777777
Q ss_pred EEe
Q 017349 352 KVM 354 (373)
Q Consensus 352 ~~~ 354 (373)
...
T Consensus 132 tVt 134 (136)
T PF14781_consen 132 TVT 134 (136)
T ss_pred Eec
Confidence 653
No 194
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=63.74 E-value=1.3e+02 Score=28.08 Aligned_cols=204 Identities=8% Similarity=-0.024 Sum_probs=100.2
Q ss_pred EEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeee-eeEe-CCeEEEEcCCCCCC----CCcCce
Q 017349 124 TSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFA-SGNV-NGKIMAVGGTGANI----NETMTA 197 (373)
Q Consensus 124 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~-~~~~-~~~iyv~GG~~~~~----~~~~~~ 197 (373)
..++.+++.++++--.+ + .....++++|..+++.. +.. ..+.... ++.. +++.++....+... ......
T Consensus 129 ~~~Spdg~~la~~~s~~-G-~e~~~l~v~Dl~tg~~l--~d~-i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDG-G-SEWYTLRVFDLETGKFL--PDG-IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEETTTSSEEEEEEEET-T-SSEEEEEEEETTTTEEE--EEE-EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeECCCCCEEEEEecCC-C-CceEEEEEEECCCCcCc--CCc-ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 44445666555542211 1 22447999999999432 221 1222222 3333 33444444333100 112567
Q ss_pred EEEEeCCCCeEE--eccCCccccc-cccE-EEECCEEEEEeCccCCCccCCceEEEeCCCC-----ceeecccCccCCcc
Q 017349 198 VECYDPESDTWT--TAAKLRMGLA-RYDS-AVMGSKMYVTEGWTWPFMFSPRGGVYDINKD-----TWNLMSDGMKEGWT 268 (373)
Q Consensus 198 ~~~yd~~t~~W~--~~~~~~~~~~-~~~~-~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~-----~W~~~~~~~~~~~~ 268 (373)
++.....+..-+ .+-.-+.+.. ...+ ..-+++..++.-..... .+.++..|...+ .|..+.... .+..
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~--~s~v~~~d~~~~~~~~~~~~~l~~~~-~~~~ 280 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS--ESEVYLLDLDDGGSPDAKPKLLSPRE-DGVE 280 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS--EEEEEEEECCCTTTSS-SEEEEEESS-SS-E
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc--CCeEEEEeccccCCCcCCcEEEeCCC-CceE
Confidence 888887776543 2211122222 2222 22356654443332111 367899999875 788776422 2232
Q ss_pred eEEEEECCeEEEEeeCC--CcceEEEeCCCCc---ee-eecCCCCCCcccccceEEEEeCCEEEEEeCCceeeeeEEEE
Q 017349 269 GISIVLEGKLFVISEHG--DCPMKQYNPDDDT---WR-YVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYE 341 (373)
Q Consensus 269 ~~~~~~~~~l~v~gg~~--~~~~~~yd~~~~~---W~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~ 341 (373)
......++.+|+....+ ...+..+++.... |. .+. +.. ....-..+...++.|++.-- .+....+..
T Consensus 281 ~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~--~~~--~~~~l~~~~~~~~~Lvl~~~--~~~~~~l~v 353 (414)
T PF02897_consen 281 YYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI--PED--EDVSLEDVSLFKDYLVLSYR--ENGSSRLRV 353 (414)
T ss_dssp EEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----S--SSEEEEEEEEETTEEEEEEE--ETTEEEEEE
T ss_pred EEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc--CCC--CceeEEEEEEECCEEEEEEE--ECCccEEEE
Confidence 33345599999987543 5688888887664 66 443 211 11233445567888887654 333444555
No 195
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=63.61 E-value=1.1e+02 Score=27.13 Aligned_cols=98 Identities=17% Similarity=0.205 Sum_probs=53.9
Q ss_pred CCeEEEEcCCCCCCCCcCceEEE---EeCCCCeEEeccCCccccccccEEEE------CCEEEEEeCccCCCccCCceEE
Q 017349 178 NGKIMAVGGTGANINETMTAVEC---YDPESDTWTTAAKLRMGLARYDSAVM------GSKMYVTEGWTWPFMFSPRGGV 248 (373)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~~~---yd~~t~~W~~~~~~~~~~~~~~~~~~------~~~lyv~gG~~~~~~~~~~i~~ 248 (373)
++..++-||.+ ..+.. |.-..|.|..- .|..|++ ++...+..|.+ ..+..
T Consensus 58 ~gs~~aSgG~D-------r~I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~gtD------k~v~~ 116 (338)
T KOG0265|consen 58 DGSCFASGGSD-------RAIVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCGTD------KTVRG 116 (338)
T ss_pred CCCeEeecCCc-------ceEEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEecCC------ceEEE
Confidence 56777888876 22333 44455666532 4555444 45555555555 58999
Q ss_pred EeCCCCceeecccCccCCcceEEE-EECCeEEEEeeCCCcceEEEeCCCC
Q 017349 249 YDINKDTWNLMSDGMKEGWTGISI-VLEGKLFVISEHGDCPMKQYNPDDD 297 (373)
Q Consensus 249 yd~~~~~W~~~~~~~~~~~~~~~~-~~~~~l~v~gg~~~~~~~~yd~~~~ 297 (373)
||.++++=...-. .......... .--|-..|..|.+...+..||..++
T Consensus 117 wD~~tG~~~rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k 165 (338)
T KOG0265|consen 117 WDAETGKRIRKHK-GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK 165 (338)
T ss_pred Eecccceeeehhc-cccceeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence 9999987433211 1111112211 1223445555666788899998744
No 196
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=63.08 E-value=1.2e+02 Score=27.55 Aligned_cols=32 Identities=6% Similarity=0.040 Sum_probs=21.4
Q ss_pred EEECCeEEEEeeCCCcceEEEeCCCC-ceeeecC
Q 017349 272 IVLEGKLFVISEHGDCPMKQYNPDDD-TWRYVGG 304 (373)
Q Consensus 272 ~~~~~~l~v~gg~~~~~~~~yd~~~~-~W~~~~~ 304 (373)
.+..+.+++.||. +..++.||-+++ .++....
T Consensus 367 ~~nsD~v~~~G~d-ng~~~fwdwksg~nyQ~~~t 399 (460)
T KOG0285|consen 367 SVNSDGVLVSGGD-NGSIMFWDWKSGHNYQRGQT 399 (460)
T ss_pred eeccCceEEEcCC-ceEEEEEecCcCcccccccc
Confidence 3445667777775 778888888765 4555543
No 197
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=62.51 E-value=84 Score=26.30 Aligned_cols=97 Identities=9% Similarity=0.122 Sum_probs=62.0
Q ss_pred cEEEECCEEEEEeCccCCCccCCceEEEeCCCCc--eeecccCccCCcceE-EEEECCeEEEEeeCCCcceEEEeCCCCc
Q 017349 222 DSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT--WNLMSDGMKEGWTGI-SIVLEGKLFVISEHGDCPMKQYNPDDDT 298 (373)
Q Consensus 222 ~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~--W~~~~~~~~~~~~~~-~~~~~~~l~v~gg~~~~~~~~yd~~~~~ 298 (373)
.....+|++|...|..+ ...+.++|+.+++ |++--+ +...++- .+..++.+|.+-=. +...+.||+. +
T Consensus 50 GL~~~~g~i~esTG~yg----~S~ir~~~L~~gq~~~s~~l~--~~~~FgEGit~~gd~~y~LTw~-egvaf~~d~~--t 120 (262)
T COG3823 50 GLEYLDGHILESTGLYG----FSKIRVSDLTTGQEIFSEKLA--PDTVFGEGITKLGDYFYQLTWK-EGVAFKYDAD--T 120 (262)
T ss_pred ceeeeCCEEEEeccccc----cceeEEEeccCceEEEEeecC--CccccccceeeccceEEEEEec-cceeEEEChH--H
Confidence 34556888888777542 2578999998665 544221 2233333 37889999998643 4566777764 4
Q ss_pred eeeecCCCCCCcccccceEEEEeCCEEEEEeCC
Q 017349 299 WRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSG 331 (373)
Q Consensus 299 W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~ 331 (373)
.+.++..+.+ -.+.+++..+..|++--|.
T Consensus 121 ~~~lg~~~y~----GeGWgLt~d~~~LimsdGs 149 (262)
T COG3823 121 LEELGRFSYE----GEGWGLTSDDKNLIMSDGS 149 (262)
T ss_pred hhhhcccccC----CcceeeecCCcceEeeCCc
Confidence 6666655555 5667777777776666664
No 198
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=62.31 E-value=1e+02 Score=26.45 Aligned_cols=172 Identities=15% Similarity=0.144 Sum_probs=94.5
Q ss_pred CCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCC---ceeccCCCCCc--------
Q 017349 100 RSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTN---QWQLASPMLTP-------- 168 (373)
Q Consensus 100 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~---~W~~~~~~~~~-------- 168 (373)
....+...-.+|.+. .+.+.++. +|.+|.-. .....+.+|+..++ .|..++.+...
T Consensus 54 ~~~~~~~~~~lp~~~----~gTg~VVy--nGs~yynk-------~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~ 120 (249)
T KOG3545|consen 54 KRGRKAEKYRLPYSW----DGTGHVVY--NGSLYYNK-------AGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWG 120 (249)
T ss_pred hccCcceEEeCCCCc----cccceEEE--cceEEeec-------cCCcceEEEEeecceeeeeeeccccccCCCcccccC
Confidence 344555555566443 55666666 77777653 23457889999885 36666544211
Q ss_pred -ceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCC----CeEEeccCCccccccccEEEECCEEEEEeCccCCCccC
Q 017349 169 -RSFFASGNVNGKIMAVGGTGANINETMTAVECYDPES----DTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFS 243 (373)
Q Consensus 169 -r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t----~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~ 243 (373)
....-.++..+-++++--.. +....-.+-..|+.+ .+|+.- .+. +....+.++=|.+|++-...... .
T Consensus 121 g~sdiD~avDE~GLWviYat~--~~~g~iv~skLdp~tl~~e~tW~T~--~~k-~~~~~aF~iCGvLY~v~S~~~~~--~ 193 (249)
T KOG3545|consen 121 GHSDIDLAVDENGLWVIYATP--ENAGTIVLSKLDPETLEVERTWNTT--LPK-RSAGNAFMICGVLYVVHSYNCTH--T 193 (249)
T ss_pred CCccccceecccceeEEeccc--ccCCcEEeeccCHHHhheeeeeccc--cCC-CCcCceEEEeeeeEEEeccccCC--c
Confidence 12223445556677664432 222222235667643 346432 121 22234566678899997655221 1
Q ss_pred CceEEEeCCCCceeecccCccCCcceEE----EEECCeEEEEeeCCCcceEEEeC
Q 017349 244 PRGGVYDINKDTWNLMSDGMKEGWTGIS----IVLEGKLFVISEHGDCPMKQYNP 294 (373)
Q Consensus 244 ~~i~~yd~~~~~W~~~~~~~~~~~~~~~----~~~~~~l~v~gg~~~~~~~~yd~ 294 (373)
.--++||..+++=+.+..|.+....... .-.+.+||+.. ......|++
T Consensus 194 ~i~yaydt~~~~~~~~~ipf~N~y~~~~~idYNP~D~~LY~wd---ng~~l~y~l 245 (249)
T KOG3545|consen 194 QISYAYDTTTGTQERIDLPFPNPYSYATMIDYNPRDRRLYAWD---NGHQLTYNL 245 (249)
T ss_pred eEEEEEEcCCCceecccccccchhhhhhccCCCcccceeeEec---CCcEEEEEe
Confidence 2237999998887666554444433333 13467888875 335566664
No 199
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=61.57 E-value=96 Score=25.97 Aligned_cols=189 Identities=10% Similarity=0.035 Sum_probs=98.4
Q ss_pred eEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCC-CcceeeeeeEeCCeEEEEcCCCCCCCCcCceEE
Q 017349 121 FACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPML-TPRSFFASGNVNGKIMAVGGTGANINETMTAVE 199 (373)
Q Consensus 121 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 199 (373)
|.......++++|..-|. ...+.+.++|..+++-..-.+++ ..-..-+.+..++.+|..-=.+ .-.+
T Consensus 47 fTQGL~~~~g~i~esTG~-----yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~e-------gvaf 114 (262)
T COG3823 47 FTQGLEYLDGHILESTGL-----YGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKE-------GVAF 114 (262)
T ss_pred hhcceeeeCCEEEEeccc-----cccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEecc-------ceeE
Confidence 443333338899988876 34558999999977533322333 2334456777889998874322 2355
Q ss_pred EEeCCCCeEEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCcee---eccc-CccCCcceEEEEEC
Q 017349 200 CYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWN---LMSD-GMKEGWTGISIVLE 275 (373)
Q Consensus 200 ~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~---~~~~-~~~~~~~~~~~~~~ 275 (373)
.||+.+ .+.+...+.+-.+.+.+.-+..|...-|.. .+..-||++=.=. .+.. ..|-..-.-.-.++
T Consensus 115 ~~d~~t--~~~lg~~~y~GeGWgLt~d~~~LimsdGsa-------tL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~Vd 185 (262)
T COG3823 115 KYDADT--LEELGRFSYEGEGWGLTSDDKNLIMSDGSA-------TLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVD 185 (262)
T ss_pred EEChHH--hhhhcccccCCcceeeecCCcceEeeCCce-------EEEecCHHHhhhcceEEEEECCeecccccceeeec
Confidence 666544 344555555555555665555555544432 3344455432110 1110 11111111112346
Q ss_pred CeEEEEeeCCCcceEEEeCCCC---ceeeecCCCCCC-cccc---cceEEE--EeCCEEEEEeCC
Q 017349 276 GKLFVISEHGDCPMKQYNPDDD---TWRYVGGDKFPC-EVMH---RPFAVN--GVEGKIYVVSSG 331 (373)
Q Consensus 276 ~~l~v~gg~~~~~~~~yd~~~~---~W~~~~~~~~~~-~~~~---~~~~~~--~~~~~l~i~GG~ 331 (373)
|.+|.-== -...|.+.||+++ .|.++..++... .... ...+.+ ..++++||.|-.
T Consensus 186 G~lyANVw-~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~ 249 (262)
T COG3823 186 GELYANVW-QTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL 249 (262)
T ss_pred cEEEEeee-eecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence 66664211 1568889999987 587777533210 0001 112333 345789998875
No 200
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=61.18 E-value=15 Score=21.15 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=16.4
Q ss_pred EEECCeEEEEeeCCCcceEEEeCCC
Q 017349 272 IVLEGKLFVISEHGDCPMKQYNPDD 296 (373)
Q Consensus 272 ~~~~~~l~v~gg~~~~~~~~yd~~~ 296 (373)
++.++++|+.+. ...++.+|+++
T Consensus 18 ~v~~g~vyv~~~--dg~l~ald~~t 40 (40)
T PF13570_consen 18 AVAGGRVYVGTG--DGNLYALDAAT 40 (40)
T ss_dssp EECTSEEEEE-T--TSEEEEEETT-
T ss_pred EEECCEEEEEcC--CCEEEEEeCCC
Confidence 667888888766 44899998764
No 201
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=60.69 E-value=1.2e+02 Score=26.94 Aligned_cols=94 Identities=12% Similarity=0.162 Sum_probs=44.0
Q ss_pred CCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEeCCeE
Q 017349 102 GRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKI 181 (373)
Q Consensus 102 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~i 181 (373)
.+|...+...++. |....+.+.+++.-.+.||.+ ..+.+||..++. +++.+-.+-...++..+..-.
T Consensus 29 ~~~~l~~lF~~~a----H~~sitavAVs~~~~aSGssD-------etI~IYDm~k~~--qlg~ll~HagsitaL~F~~~~ 95 (362)
T KOG0294|consen 29 VKPTLKPLFAFSA----HAGSITALAVSGPYVASGSSD-------ETIHIYDMRKRK--QLGILLSHAGSITALKFYPPL 95 (362)
T ss_pred cceeeeccccccc----cccceeEEEecceeEeccCCC-------CcEEEEeccchh--hhcceeccccceEEEEecCCc
Confidence 4455544444332 333333333355555555542 168999998875 333333222222222222111
Q ss_pred ---EEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCcc
Q 017349 182 ---MAVGGTGANINETMTAVECYDPESDTWTTAAKLRM 216 (373)
Q Consensus 182 ---yv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~ 216 (373)
.++.|.+ . -.+.++ ..+.|..+..+..
T Consensus 96 S~shLlS~sd--D----G~i~iw--~~~~W~~~~slK~ 125 (362)
T KOG0294|consen 96 SKSHLLSGSD--D----GHIIIW--RVGSWELLKSLKA 125 (362)
T ss_pred chhheeeecC--C----CcEEEE--EcCCeEEeeeecc
Confidence 4555543 1 124455 4677877765544
No 202
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=60.68 E-value=1.2e+02 Score=26.83 Aligned_cols=131 Identities=13% Similarity=0.165 Sum_probs=65.7
Q ss_pred eeEEEeCCCCceeccCCCCCc-ceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEE
Q 017349 148 STIMYRATTNQWQLASPMLTP-RSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVM 226 (373)
Q Consensus 148 ~~~~yd~~t~~W~~~~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 226 (373)
.+-.||+.+++=.++..-..| |..|-+--.+..+.+-|.++ ..+-.+|+.... .+..+..|-..+++-+.
T Consensus 95 ~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWD-------KTlKfWD~R~~~--pv~t~~LPeRvYa~Dv~ 165 (347)
T KOG0647|consen 95 QAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWD-------KTLKFWDTRSSN--PVATLQLPERVYAADVL 165 (347)
T ss_pred ceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccc-------cceeecccCCCC--eeeeeeccceeeehhcc
Confidence 688999999976666532222 22221111222344445554 334455554321 12222222122233232
Q ss_pred CCEEEEEeCccCCCccCCceEEEeCCCCc--eeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEeCC
Q 017349 227 GSKMYVTEGWTWPFMFSPRGGVYDINKDT--WNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPD 295 (373)
Q Consensus 227 ~~~lyv~gG~~~~~~~~~~i~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~ 295 (373)
.. +.+++-.+ ..|.+|+++... ...+..|+.-.....++..++..|.+|+. ++.+.+.+++
T Consensus 166 ~p-m~vVata~------r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi-EGrv~iq~id 228 (347)
T KOG0647|consen 166 YP-MAVVATAE------RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI-EGRVAIQYID 228 (347)
T ss_pred Cc-eeEEEecC------CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee-cceEEEEecC
Confidence 33 33333222 578999997664 45555555444444556678888899887 4455554443
No 203
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=60.28 E-value=1.2e+02 Score=26.80 Aligned_cols=137 Identities=9% Similarity=0.054 Sum_probs=77.4
Q ss_pred cceeEEEeCCCCc----eeccCCCCCcceeeeeeE------eCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCc
Q 017349 146 MQSTIMYRATTNQ----WQLASPMLTPRSFFASGN------VNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLR 215 (373)
Q Consensus 146 ~~~~~~yd~~t~~----W~~~~~~~~~r~~~~~~~------~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 215 (373)
.+.+..||...++ |++- +..++...+-++ ++++|++.-+- ....-.++..|..++.-+.+.+-|
T Consensus 77 YSHVH~yd~e~~~VrLLWkes--ih~~~~WaGEVSdIlYdP~~D~LLlAR~D----Gh~nLGvy~ldr~~g~~~~L~~~p 150 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKES--IHDKTKWAGEVSDILYDPYEDRLLLARAD----GHANLGVYSLDRRTGKAEKLSSNP 150 (339)
T ss_pred cceEEEEEcCCCeEEEEEecc--cCCccccccchhheeeCCCcCEEEEEecC----CcceeeeEEEcccCCceeeccCCC
Confidence 3567889988875 5443 222333322221 25678776432 223345788888888888776555
Q ss_pred cccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCce--eecccC-------ccCCcceEEEEECCeEEEEeeCCC
Q 017349 216 MGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTW--NLMSDG-------MKEGWTGISIVLEGKLFVISEHGD 286 (373)
Q Consensus 216 ~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W--~~~~~~-------~~~~~~~~~~~~~~~l~v~gg~~~ 286 (373)
... .+.+.+-.++-+ ..-......+.+||+.+++| +..+.. .-.+..+..+...+++|.+=+.
T Consensus 151 s~K---G~~~~D~a~F~i---~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rG-- 222 (339)
T PF09910_consen 151 SLK---GTLVHDYACFGI---NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRG-- 222 (339)
T ss_pred CcC---ceEeeeeEEEec---cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEec--
Confidence 432 233334344333 21223347899999999999 443321 1112233446677888876432
Q ss_pred cceEEEeCCCC
Q 017349 287 CPMKQYNPDDD 297 (373)
Q Consensus 287 ~~~~~yd~~~~ 297 (373)
-+.+.||..+
T Consensus 223 -Gi~vgnP~~~ 232 (339)
T PF09910_consen 223 -GIFVGNPYNG 232 (339)
T ss_pred -cEEEeCCCCC
Confidence 6778888733
No 204
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=59.32 E-value=1.3e+02 Score=26.67 Aligned_cols=158 Identities=14% Similarity=0.163 Sum_probs=78.1
Q ss_pred EEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCc-ceee
Q 017349 94 WQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTP-RSFF 172 (373)
Q Consensus 94 ~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-r~~~ 172 (373)
+..||...+.-.. .+... ..-..|+.. +..=.++||.. + .+.+||..+..=..+..-..+ |.-+
T Consensus 37 lrlYdv~~~~l~~--~~~~~----~plL~c~F~--d~~~~~~G~~d--g-----~vr~~Dln~~~~~~igth~~~i~ci~ 101 (323)
T KOG1036|consen 37 LRLYDVPANSLKL--KFKHG----APLLDCAFA--DESTIVTGGLD--G-----QVRRYDLNTGNEDQIGTHDEGIRCIE 101 (323)
T ss_pred EEEEeccchhhhh--heecC----Cceeeeecc--CCceEEEeccC--c-----eEEEEEecCCcceeeccCCCceEEEE
Confidence 5668877762221 12111 122334444 44444566662 2 689999998876665432222 1111
Q ss_pred eeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCC
Q 017349 173 ASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDIN 252 (373)
Q Consensus 173 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~ 252 (373)
.. .....++.||++ ..+..+|+....= ......+-.-. +....+...++|+.+ ..+..||+.
T Consensus 102 ~~--~~~~~vIsgsWD-------~~ik~wD~R~~~~--~~~~d~~kkVy-~~~v~g~~LvVg~~~------r~v~iyDLR 163 (323)
T KOG1036|consen 102 YS--YEVGCVISGSWD-------KTIKFWDPRNKVV--VGTFDQGKKVY-CMDVSGNRLVVGTSD------RKVLIYDLR 163 (323)
T ss_pred ee--ccCCeEEEcccC-------ccEEEEecccccc--ccccccCceEE-EEeccCCEEEEeecC------ceEEEEEcc
Confidence 11 234456778886 4577888876211 11111111112 223355556666655 689999998
Q ss_pred CCc--eeecccCccCCcceEEEEECCeEEEEeeC
Q 017349 253 KDT--WNLMSDGMKEGWTGISIVLEGKLFVISEH 284 (373)
Q Consensus 253 ~~~--W~~~~~~~~~~~~~~~~~~~~~l~v~gg~ 284 (373)
+.. .+.-+..+.-.-...+++-++.-|+++..
T Consensus 164 n~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi 197 (323)
T KOG1036|consen 164 NLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI 197 (323)
T ss_pred cccchhhhccccceeEEEEEEEecCCCceEEEee
Confidence 764 22222222222222233336666766654
No 205
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=58.77 E-value=1.1e+02 Score=30.53 Aligned_cols=61 Identities=7% Similarity=0.113 Sum_probs=37.7
Q ss_pred CCEEEEEeCccCCCccCCceEEEeCCCCceee-cccCccCCcceEEEEECCeEEEEeeCCCcceEEEeCC
Q 017349 227 GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNL-MSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPD 295 (373)
Q Consensus 227 ~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~ 295 (373)
.|+..+.|+.+ ..|..||+.+++=-. +-. ............+|.+++.||. .+++..||..
T Consensus 588 ~Gr~LaSg~ed------~~I~iWDl~~~~~v~~l~~-Ht~ti~SlsFS~dg~vLasgg~-DnsV~lWD~~ 649 (707)
T KOG0263|consen 588 CGRYLASGDED------GLIKIWDLANGSLVKQLKG-HTGTIYSLSFSRDGNVLASGGA-DNSVRLWDLT 649 (707)
T ss_pred CCceEeecccC------CcEEEEEcCCCcchhhhhc-ccCceeEEEEecCCCEEEecCC-CCeEEEEEch
Confidence 66666666665 678999998875321 111 1111122225678999999886 5677777764
No 206
>PRK10115 protease 2; Provisional
Probab=57.83 E-value=2.2e+02 Score=28.89 Aligned_cols=119 Identities=8% Similarity=-0.030 Sum_probs=65.0
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCC-CCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCe
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRAT-TNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDT 207 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~ 207 (373)
++.+|+.-... .....+...+.. ++.|+.+-+....+.--.+...++.|++..-.+ ....++++|..++.
T Consensus 279 ~~~ly~~tn~~----~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~-----g~~~l~~~~~~~~~ 349 (686)
T PRK10115 279 QHRFYLRSNRH----GKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQR-----GLTSLRQINRKTRE 349 (686)
T ss_pred CCEEEEEEcCC----CCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeC-----CEEEEEEEcCCCCc
Confidence 67888875432 223357777776 578987754422223334445577777764332 34568888877666
Q ss_pred EEeccCCccccccccE-EE--E-CCEEEE-EeCccCCCccCCceEEEeCCCCceeeccc
Q 017349 208 WTTAAKLRMGLARYDS-AV--M-GSKMYV-TEGWTWPFMFSPRGGVYDINKDTWNLMSD 261 (373)
Q Consensus 208 W~~~~~~~~~~~~~~~-~~--~-~~~lyv-~gG~~~~~~~~~~i~~yd~~~~~W~~~~~ 261 (373)
.+.+. ++.+...... .. . ++.+++ +.+.. ....++.||+.+++|+.+..
T Consensus 350 ~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ss~~----~P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 350 VIGIA-FDDPAYVTWIAYNPEPETSRLRYGYSSMT----TPDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred eEEec-CCCCceEeeecccCCCCCceEEEEEecCC----CCCEEEEEECCCCcEEEEEe
Confidence 65554 1111111110 11 1 134433 33332 33688999999988876643
No 207
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=57.42 E-value=1.4e+02 Score=26.50 Aligned_cols=103 Identities=16% Similarity=0.195 Sum_probs=61.1
Q ss_pred CceEEEeCCCCc----eeecccCccCCcceEE--EE---ECCeEEEEeeCC--CcceEEEeCCCCceeeecCCCCCCccc
Q 017349 244 PRGGVYDINKDT----WNLMSDGMKEGWTGIS--IV---LEGKLFVISEHG--DCPMKQYNPDDDTWRYVGGDKFPCEVM 312 (373)
Q Consensus 244 ~~i~~yd~~~~~----W~~~~~~~~~~~~~~~--~~---~~~~l~v~gg~~--~~~~~~yd~~~~~W~~~~~~~~~~~~~ 312 (373)
+.+..||.++++ |.+--. .+..+.+-. .. ++++|++.-+.+ +.-++..|..++.-+.+...|.+
T Consensus 78 SHVH~yd~e~~~VrLLWkesih-~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~---- 152 (339)
T PF09910_consen 78 SHVHEYDTENDSVRLLWKESIH-DKTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSL---- 152 (339)
T ss_pred ceEEEEEcCCCeEEEEEecccC-CccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCc----
Confidence 357788888876 654332 234444332 22 478899875443 67788889999988888754544
Q ss_pred ccceEEEEeCCEEEEEeCCceeeeeEEEE-eecCCcccce--EEecCCC
Q 017349 313 HRPFAVNGVEGKIYVVSSGLNVAIGRVYE-EQNGGISAEW--KVMTAPR 358 (373)
Q Consensus 313 ~~~~~~~~~~~~l~i~GG~~~~~~~~~~~-~~~d~~~~~W--~~~~~p~ 358 (373)
-+....+...|-+ ++....+.. +++|..+.+| +.++.+.
T Consensus 153 ---KG~~~~D~a~F~i----~~~~~g~~~i~~~Dli~~~~~~e~f~~~~ 194 (339)
T PF09910_consen 153 ---KGTLVHDYACFGI----NNFHKGVSGIHCLDLISGKWVIESFDVSL 194 (339)
T ss_pred ---CceEeeeeEEEec----cccccCCceEEEEEccCCeEEEEeccccc
Confidence 3444444444433 233222222 4488889999 5555443
No 208
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=56.75 E-value=1.5e+02 Score=26.52 Aligned_cols=88 Identities=10% Similarity=0.110 Sum_probs=48.0
Q ss_pred CeEEeccCCccc--cccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCceeecccC-ccCCcceEEEEECCeE---E
Q 017349 206 DTWTTAAKLRMG--LARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDG-MKEGWTGISIVLEGKL---F 279 (373)
Q Consensus 206 ~~W~~~~~~~~~--~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~-~~~~~~~~~~~~~~~l---~ 279 (373)
.+|...+.+..+ -..-.++.+++...+.||.+ ..|.+||..++.= ++.. .+.+... +..+...+ .
T Consensus 29 ~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssD------etI~IYDm~k~~q--lg~ll~Hagsit-aL~F~~~~S~sh 99 (362)
T KOG0294|consen 29 VKPTLKPLFAFSAHAGSITALAVSGPYVASGSSD------ETIHIYDMRKRKQ--LGILLSHAGSIT-ALKFYPPLSKSH 99 (362)
T ss_pred cceeeeccccccccccceeEEEecceeEeccCCC------CcEEEEeccchhh--hcceeccccceE-EEEecCCcchhh
Confidence 456555543332 12233556677766677766 5899999987641 1110 1111111 12222222 5
Q ss_pred EEeeCCCcceEEEeCCCCceeeecC
Q 017349 280 VISEHGDCPMKQYNPDDDTWRYVGG 304 (373)
Q Consensus 280 v~gg~~~~~~~~yd~~~~~W~~~~~ 304 (373)
++.|.+...+.+|+. +.|..+..
T Consensus 100 LlS~sdDG~i~iw~~--~~W~~~~s 122 (362)
T KOG0294|consen 100 LLSGSDDGHIIIWRV--GSWELLKS 122 (362)
T ss_pred eeeecCCCcEEEEEc--CCeEEeee
Confidence 666666777888874 57877765
No 209
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=56.32 E-value=1.2e+02 Score=30.26 Aligned_cols=90 Identities=12% Similarity=0.097 Sum_probs=46.9
Q ss_pred eeEEEeCCCCceeccCCCCCcceeeeeeEe-CCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCcccc--ccccEE
Q 017349 148 STIMYRATTNQWQLASPMLTPRSFFASGNV-NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGL--ARYDSA 224 (373)
Q Consensus 148 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~--~~~~~~ 224 (373)
.+..||..++.-.++-.- ..+.-.+++.. .|+-.+-|+.+ ..+.+||..+.+- +..+-... ...-..
T Consensus 558 tVRlWDv~~G~~VRiF~G-H~~~V~al~~Sp~Gr~LaSg~ed-------~~I~iWDl~~~~~--v~~l~~Ht~ti~SlsF 627 (707)
T KOG0263|consen 558 TVRLWDVSTGNSVRIFTG-HKGPVTALAFSPCGRYLASGDED-------GLIKIWDLANGSL--VKQLKGHTGTIYSLSF 627 (707)
T ss_pred eEEEEEcCCCcEEEEecC-CCCceEEEEEcCCCceEeecccC-------CcEEEEEcCCCcc--hhhhhcccCceeEEEE
Confidence 566777777654443221 12222233332 45544445543 3477888877642 11222111 111123
Q ss_pred EECCEEEEEeCccCCCccCCceEEEeCCC
Q 017349 225 VMGSKMYVTEGWTWPFMFSPRGGVYDINK 253 (373)
Q Consensus 225 ~~~~~lyv~gG~~~~~~~~~~i~~yd~~~ 253 (373)
..+|.+++.||.+ +++-.||...
T Consensus 628 S~dg~vLasgg~D------nsV~lWD~~~ 650 (707)
T KOG0263|consen 628 SRDGNVLASGGAD------NSVRLWDLTK 650 (707)
T ss_pred ecCCCEEEecCCC------CeEEEEEchh
Confidence 4489999999987 6777777643
No 210
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=55.21 E-value=13 Score=33.26 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=33.1
Q ss_pred CCCCCCChHHHHHhhccCC--------ccchhhhhhhcHhHHhhccC
Q 017349 25 PLIPGLPDEIGELCLLHVP--------YPYQALVRSVSYSWNKAITD 63 (373)
Q Consensus 25 ~~~~~LP~dl~~~il~rlp--------~~~l~~~~~v~k~W~~l~~~ 63 (373)
..|+.||.+++..|+.++. +++...+..+|+.|+.+..+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 6899999999999998885 34678888999999998543
No 211
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=54.87 E-value=1.9e+02 Score=27.19 Aligned_cols=143 Identities=11% Similarity=0.155 Sum_probs=75.2
Q ss_pred EEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCccee-eeeeEeC--CeEEEEcCCCCCCCCcCceEE
Q 017349 123 CTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSF-FASGNVN--GKIMAVGGTGANINETMTAVE 199 (373)
Q Consensus 123 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~-~~~~~~~--~~iyv~GG~~~~~~~~~~~~~ 199 (373)
+.+++++++.+++||.. +.+.+||+.|..-.+. +...|.. .++++.. +.+|..+- + .++-
T Consensus 207 ~~avS~Dgkylatgg~d-------~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt~~lys~s~-D-------rsvk 269 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGGRD-------RHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGTSELYSASA-D-------RSVK 269 (479)
T ss_pred EEEEcCCCcEEEecCCC-------ceEEEecCcccchhhc--ccccccceeeeeeecCccceeeeec-C-------CceE
Confidence 34555699999999973 2567888877753332 3323322 2233332 35555431 1 2344
Q ss_pred EEeCCCCeEEeccCCccccccccEEE------ECCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEE
Q 017349 200 CYDPESDTWTTAAKLRMGLARYDSAV------MGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIV 273 (373)
Q Consensus 200 ~yd~~t~~W~~~~~~~~~~~~~~~~~------~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~ 273 (373)
+|+.+.... -...++|...+ ..++...+||.+ ..+..|++...+ +.+-. ........++.
T Consensus 270 vw~~~~~s~------vetlyGHqd~v~~IdaL~reR~vtVGgrD------rT~rlwKi~ees-qlifr-g~~~sidcv~~ 335 (479)
T KOG0299|consen 270 VWSIDQLSY------VETLYGHQDGVLGIDALSRERCVTVGGRD------RTVRLWKIPEES-QLIFR-GGEGSIDCVAF 335 (479)
T ss_pred EEehhHhHH------HHHHhCCccceeeechhcccceEEecccc------ceeEEEeccccc-eeeee-CCCCCeeeEEE
Confidence 555444332 12233343322 257888899887 456666663222 11111 11223333466
Q ss_pred ECCeEEEEeeCCCcceEEEeCCCC
Q 017349 274 LEGKLFVISEHGDCPMKQYNPDDD 297 (373)
Q Consensus 274 ~~~~l~v~gg~~~~~~~~yd~~~~ 297 (373)
+++.=|+.|+. .+.|..++..++
T Consensus 336 In~~HfvsGSd-nG~IaLWs~~KK 358 (479)
T KOG0299|consen 336 INDEHFVSGSD-NGSIALWSLLKK 358 (479)
T ss_pred ecccceeeccC-CceEEEeeeccc
Confidence 78888888765 556666665544
No 212
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=54.80 E-value=1.7e+02 Score=26.66 Aligned_cols=205 Identities=8% Similarity=0.036 Sum_probs=100.5
Q ss_pred eEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceee
Q 017349 93 QWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFF 172 (373)
Q Consensus 93 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~ 172 (373)
.+-++|.++..-.. .++.-. ...-++++. ..+=|+|.... -..+-+||...|+-.+- -++|
T Consensus 174 tikIwDlatg~Lkl--tltGhi---~~vr~vavS--~rHpYlFs~ge------dk~VKCwDLe~nkvIR~------YhGH 234 (460)
T KOG0285|consen 174 TIKIWDLATGQLKL--TLTGHI---ETVRGVAVS--KRHPYLFSAGE------DKQVKCWDLEYNKVIRH------YHGH 234 (460)
T ss_pred eeEEEEcccCeEEE--eecchh---heeeeeeec--ccCceEEEecC------CCeeEEEechhhhhHHH------hccc
Confidence 45677888775433 222000 022334444 45555554331 12688999988864321 1112
Q ss_pred eeeEe------CCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEE---CCEEEEEeCccCCCccC
Q 017349 173 ASGNV------NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVM---GSKMYVTEGWTWPFMFS 243 (373)
Q Consensus 173 ~~~~~------~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~---~~~lyv~gG~~~~~~~~ 243 (373)
-..++ --.+.+-||.+ ..+.++|..|..=. ..|...+..-+.+.+ ++.||. |..+
T Consensus 235 lS~V~~L~lhPTldvl~t~grD-------st~RvWDiRtr~~V--~~l~GH~~~V~~V~~~~~dpqvit-~S~D------ 298 (460)
T KOG0285|consen 235 LSGVYCLDLHPTLDVLVTGGRD-------STIRVWDIRTRASV--HVLSGHTNPVASVMCQPTDPQVIT-GSHD------ 298 (460)
T ss_pred cceeEEEeccccceeEEecCCc-------ceEEEeeecccceE--EEecCCCCcceeEEeecCCCceEE-ecCC------
Confidence 12211 13456667775 45777888776422 122222222222222 566653 3333
Q ss_pred CceEEEeCCCCceeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEeCCCCceeeecCCCCCCcccccceEEEEeCC
Q 017349 244 PRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEG 323 (373)
Q Consensus 244 ~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 323 (373)
..+-.+|...++=...-. .-.....+.+++-+.+.+...+.+.+..++...+..-.= +. ...-...++....+
T Consensus 299 ~tvrlWDl~agkt~~tlt--~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~n----ls-gh~~iintl~~nsD 371 (460)
T KOG0285|consen 299 STVRLWDLRAGKTMITLT--HHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQN----LS-GHNAIINTLSVNSD 371 (460)
T ss_pred ceEEEeeeccCceeEeee--cccceeeEEecCCchhhhhccCCccceeccCCccchhhc----cc-cccceeeeeeeccC
Confidence 467777777665322111 111122235566677776655566777776655533221 11 11123455667778
Q ss_pred EEEEEeCCceeeeeEEEE
Q 017349 324 KIYVVSSGLNVAIGRVYE 341 (373)
Q Consensus 324 ~l~i~GG~~~~~~~~~~~ 341 (373)
-+++.|| ++...-.++
T Consensus 372 ~v~~~G~--dng~~~fwd 387 (460)
T KOG0285|consen 372 GVLVSGG--DNGSIMFWD 387 (460)
T ss_pred ceEEEcC--CceEEEEEe
Confidence 8899888 234344444
No 213
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=53.16 E-value=1.5e+02 Score=25.50 Aligned_cols=177 Identities=14% Similarity=0.122 Sum_probs=96.0
Q ss_pred eeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeC----CCCeEEeccCCccccccccE
Q 017349 148 STIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDP----ESDTWTTAAKLRMGLARYDS 223 (373)
Q Consensus 148 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~----~t~~W~~~~~~~~~~~~~~~ 223 (373)
.+.......+.|.+=|... ++++|++.+.. ...+.-|.. ..+.|...-.+|.+..+..-
T Consensus 11 ~~~~~~~~~GsWmrDpl~~-----------~~r~~~~~~~~------~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~ 73 (249)
T KOG3545|consen 11 TVKTAGPRFGAWMRDPLPA-----------DDRIYVMNYFD------GLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGH 73 (249)
T ss_pred EEEeeccccceeecCCCcc-----------cCceEEecccc------CceEEEeccHHHhhccCcceEEeCCCCccccce
Confidence 3445555557776544322 66788884443 223444433 33456666678888888888
Q ss_pred EEECCEEEEEeCccCCCccCCceEEEeCCCC---ceeeccc-----CccCCcceE----EEEECCeEEEEeeCC----Cc
Q 017349 224 AVMGSKMYVTEGWTWPFMFSPRGGVYDINKD---TWNLMSD-----GMKEGWTGI----SIVLEGKLFVISEHG----DC 287 (373)
Q Consensus 224 ~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~---~W~~~~~-----~~~~~~~~~----~~~~~~~l~v~gg~~----~~ 287 (373)
++++|.+|.-.+.. ..+..||+.+. .|+.++. +.+-.+.+. .++-++-|+++=-.. ..
T Consensus 74 VVynGs~yynk~~t------~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~i 147 (249)
T KOG3545|consen 74 VVYNGSLYYNKAGT------RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTI 147 (249)
T ss_pred EEEcceEEeeccCC------cceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcE
Confidence 99999999765433 68999999885 3666544 111111111 144455566653221 12
Q ss_pred ceEEEeCCC----CceeeecCCCCCCcccccceEEEEeCCEEEEEeCCceeeeeEEEEeecCCcccceEEecC
Q 017349 288 PMKQYNPDD----DTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEEQNGGISAEWKVMTA 356 (373)
Q Consensus 288 ~~~~yd~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~W~~~~~ 356 (373)
.+-+.|+.+ .+|.. ..+. +....+..+=|.||++-........ ....||..+++=+.+..
T Consensus 148 v~skLdp~tl~~e~tW~T----~~~k---~~~~~aF~iCGvLY~v~S~~~~~~~--i~yaydt~~~~~~~~~i 211 (249)
T KOG3545|consen 148 VLSKLDPETLEVERTWNT----TLPK---RSAGNAFMICGVLYVVHSYNCTHTQ--ISYAYDTTTGTQERIDL 211 (249)
T ss_pred EeeccCHHHhheeeeecc----ccCC---CCcCceEEEeeeeEEEeccccCCce--EEEEEEcCCCceecccc
Confidence 235677743 35543 2221 2223344455778887764333222 33347777666544443
No 214
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=52.57 E-value=2.1e+02 Score=27.05 Aligned_cols=105 Identities=10% Similarity=-0.006 Sum_probs=55.0
Q ss_pred cCceEEEEeCCCCeEEeccCCccccccccEEEECCE-EEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEE
Q 017349 194 TMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSK-MYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISI 272 (373)
Q Consensus 194 ~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~-lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~ 272 (373)
...+++.+|..+++=.++......-. +-...-+|+ |+...... ....++.+|++...=+++..... .......
T Consensus 260 g~~~iy~~dl~~~~~~~Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~----G~p~I~~~~~~g~~~~riT~~~~-~~~~p~~ 333 (425)
T COG0823 260 GSPDIYLMDLDGKNLPRLTNGFGINT-SPSWSPDGSKIVFTSDRG----GRPQIYLYDLEGSQVTRLTFSGG-GNSNPVW 333 (425)
T ss_pred CCccEEEEcCCCCcceecccCCcccc-CccCCCCCCEEEEEeCCC----CCcceEEECCCCCceeEeeccCC-CCcCccC
Confidence 35679999998877333332222111 122222454 44442222 12489999998876665543111 1112222
Q ss_pred EECCeEEEEeeCC--CcceEEEeCCCCc-eeeecC
Q 017349 273 VLEGKLFVISEHG--DCPMKQYNPDDDT-WRYVGG 304 (373)
Q Consensus 273 ~~~~~l~v~gg~~--~~~~~~yd~~~~~-W~~~~~ 304 (373)
.-+|+.+++-+.. ...+..+|+.++. |+.+..
T Consensus 334 SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 334 SPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS 368 (425)
T ss_pred CCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc
Confidence 3355555443321 2468888887776 887764
No 215
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=51.85 E-value=9.3 Score=35.23 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=34.8
Q ss_pred CCCCCChHHHHHhhccCCccchhhhhhhcHhHHhhccCc
Q 017349 26 LIPGLPDEIGELCLLHVPYPYQALVRSVSYSWNKAITDP 64 (373)
Q Consensus 26 ~~~~LP~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~~~ 64 (373)
..-.||+|++..+++.|-.+++.+.+-+|+-|+.+.-+.
T Consensus 71 ~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 71 ISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred ccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 334599999999999999999999999999999987665
No 216
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=51.10 E-value=1.7e+02 Score=25.51 Aligned_cols=126 Identities=16% Similarity=0.232 Sum_probs=0.0
Q ss_pred eEEEEcCCCCCCCCcCceEEEEeCCCCe--EEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCc--
Q 017349 180 KIMAVGGTGANINETMTAVECYDPESDT--WTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT-- 255 (373)
Q Consensus 180 ~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~-- 255 (373)
.+.++|... ..+-.-|++++. |+.+ -..|.-.++.++++- .|+|-+. ..++..+.++++
T Consensus 24 T~v~igSHs-------~~~~avd~~sG~~~We~i---lg~RiE~sa~vvgdf-VV~GCy~------g~lYfl~~~tGs~~ 86 (354)
T KOG4649|consen 24 TLVVIGSHS-------GIVIAVDPQSGNLIWEAI---LGVRIECSAIVVGDF-VVLGCYS------GGLYFLCVKTGSQI 86 (354)
T ss_pred eEEEEecCC-------ceEEEecCCCCcEEeehh---hCceeeeeeEEECCE-EEEEEcc------CcEEEEEecchhhe
Q ss_pred eeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEeCCCCceeeecCCCCCCcccccceEEEEeCCEEEEE
Q 017349 256 WNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVV 328 (373)
Q Consensus 256 W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 328 (373)
|.... ...-...+.+..++.++..|.+ ...++..|+++..-..-. ..+ ............++.||+.
T Consensus 87 w~f~~--~~~vk~~a~~d~~~glIycgsh-d~~~yalD~~~~~cVyks--kcg-G~~f~sP~i~~g~~sly~a 153 (354)
T KOG4649|consen 87 WNFVI--LETVKVRAQCDFDGGLIYCGSH-DGNFYALDPKTYGCVYKS--KCG-GGTFVSPVIAPGDGSLYAA 153 (354)
T ss_pred eeeee--hhhhccceEEcCCCceEEEecC-CCcEEEecccccceEEec--ccC-CceeccceecCCCceEEEE
No 217
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=50.82 E-value=1.7e+02 Score=25.52 Aligned_cols=170 Identities=9% Similarity=0.049 Sum_probs=83.4
Q ss_pred eeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEecc-----CCcccccccc
Q 017349 148 STIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAA-----KLRMGLARYD 222 (373)
Q Consensus 148 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~-----~~~~~~~~~~ 222 (373)
.+-.||..+++-...-..+.+......- .++.+.++--.. .......+.+||.....=.... .+|.+-+...
T Consensus 75 t~kLWDv~tGk~la~~k~~~~Vk~~~F~-~~gn~~l~~tD~--~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit 151 (327)
T KOG0643|consen 75 TAKLWDVETGKQLATWKTNSPVKRVDFS-FGGNLILASTDK--QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT 151 (327)
T ss_pred eeEEEEcCCCcEEEEeecCCeeEEEeec-cCCcEEEEEehh--hcCcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence 6778898888643333333332222111 234444443221 2334567888888744322111 1233333333
Q ss_pred EEEE--CCEEEEEeCccCCCccCCceEEEeCCCCc-eeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEeCCCCce
Q 017349 223 SAVM--GSKMYVTEGWTWPFMFSPRGGVYDINKDT-WNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTW 299 (373)
Q Consensus 223 ~~~~--~~~lyv~gG~~~~~~~~~~i~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~W 299 (373)
.+.. -++..+.|..+ ..|-.||..++. -.................-+...++.|.. ......+|..+-+-
T Consensus 152 ~a~Wg~l~~~ii~Ghe~------G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~-Dttakl~D~~tl~v 224 (327)
T KOG0643|consen 152 SALWGPLGETIIAGHED------GSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK-DTTAKLVDVRTLEV 224 (327)
T ss_pred eeeecccCCEEEEecCC------CcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc-Cccceeeeccceee
Confidence 4443 35566666655 578999998874 22211111111111112234556666544 44555666654332
Q ss_pred eeecCCCCCCcccccceEEEEeCCEEEEEeCC
Q 017349 300 RYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSG 331 (373)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~ 331 (373)
...=....| ...+++..+.+++++-||.
T Consensus 225 ~Kty~te~P----vN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 225 LKTYTTERP----VNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred EEEeeeccc----ccceecccccceEEecCCc
Confidence 221111233 5556667778888888885
No 218
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=50.81 E-value=1.8e+02 Score=25.66 Aligned_cols=143 Identities=10% Similarity=0.095 Sum_probs=72.6
Q ss_pred ceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCcccccc-ccEEEECCEEEEEeCccCCCccCCceE
Q 017349 169 RSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLAR-YDSAVMGSKMYVTEGWTWPFMFSPRGG 247 (373)
Q Consensus 169 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~-~~~~~~~~~lyv~gG~~~~~~~~~~i~ 247 (373)
-...+.+..+++.+++|+.. .+.-=|-..++|.+...... |.. ++..+.+.+=.++|-- ..+.
T Consensus 45 ~l~ia~~~~g~~gwlVg~rg--------tiletdd~g~tw~qal~~~g-r~~f~sv~f~~~egw~vGe~-------sqll 108 (339)
T COG4447 45 TLDIAFTESGSHGWLVGGRG--------TILETDDGGITWAQALDFLG-RHAFHSVSFLGMEGWIVGEP-------SQLL 108 (339)
T ss_pred ccceeEeecCcceEEEcCcc--------eEEEecCCcccchhhhchhh-hhheeeeeeecccccccCCc-------ceEE
Confidence 33445566688999999874 13333445667977643222 333 2333333333333321 3455
Q ss_pred EEeCCCCceeecccC--ccCCcceEEEEECCeEEEEeeCCCcceEEEeCCCCceeeecCCCCCCcccccceEEEEeCCEE
Q 017349 248 VYDINKDTWNLMSDG--MKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKI 325 (373)
Q Consensus 248 ~yd~~~~~W~~~~~~--~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l 325 (373)
.=+-.-.+|.+++.. ++........+-+.+-+++|-.+ .|+.=+-..+.|+.+..-..+ ...........+|..
T Consensus 109 ~T~DgGqsWARi~~~e~~eg~~~sI~f~d~q~g~m~gd~G--ail~T~DgGk~Wk~l~e~~v~--~~~~n~ia~s~dng~ 184 (339)
T COG4447 109 HTTDGGQSWARIPLSEKLEGFPDSITFLDDQRGEMLGDQG--AILKTTDGGKNWKALVEKAVG--LAVPNEIARSADNGY 184 (339)
T ss_pred EecCCCcchhhchhhcCCCCCcceeEEecchhhhhhcccc--eEEEecCCcccHhHhcccccc--hhhhhhhhhhccCCe
Confidence 555566789988652 22222222244455566676543 444444445689987641211 112222334456666
Q ss_pred EEEeCC
Q 017349 326 YVVSSG 331 (373)
Q Consensus 326 ~i~GG~ 331 (373)
+++|-.
T Consensus 185 vaVg~r 190 (339)
T COG4447 185 VAVGAR 190 (339)
T ss_pred EEEecC
Confidence 666654
No 219
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=50.05 E-value=2.1e+02 Score=26.34 Aligned_cols=147 Identities=13% Similarity=0.145 Sum_probs=70.0
Q ss_pred EEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEe--CCeEEEEcCCCCCCCCcCceEEEE
Q 017349 124 TSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV--NGKIMAVGGTGANINETMTAVECY 201 (373)
Q Consensus 124 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~y 201 (373)
+....++..++.|+.+ ..+..+|+.|.+=.. .+.-.+..-.++.+ +++.++-|..+ .++..|
T Consensus 121 ~~fsp~g~~l~tGsGD-------~TvR~WD~~TeTp~~--t~KgH~~WVlcvawsPDgk~iASG~~d-------g~I~lw 184 (480)
T KOG0271|consen 121 VQFSPTGSRLVTGSGD-------TTVRLWDLDTETPLF--TCKGHKNWVLCVAWSPDGKKIASGSKD-------GSIRLW 184 (480)
T ss_pred EEecCCCceEEecCCC-------ceEEeeccCCCCcce--eecCCccEEEEEEECCCcchhhccccC-------CeEEEe
Confidence 3334456666666542 267788887764111 11111122222222 56666655544 568899
Q ss_pred eCCCCeEEeccCCccccccccEEEE-------CCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceE-EEE
Q 017349 202 DPESDTWTTAAKLRMGLARYDSAVM-------GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGI-SIV 273 (373)
Q Consensus 202 d~~t~~W~~~~~~~~~~~~~~~~~~-------~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~-~~~ 273 (373)
||++++= ...+++..+..-.+... ..+.+..++.+ +++.++|...++=...- ...-... ++.
T Consensus 185 dpktg~~-~g~~l~gH~K~It~Lawep~hl~p~~r~las~skD------g~vrIWd~~~~~~~~~l---sgHT~~VTCvr 254 (480)
T KOG0271|consen 185 DPKTGQQ-IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKD------GSVRIWDTKLGTCVRTL---SGHTASVTCVR 254 (480)
T ss_pred cCCCCCc-ccccccCcccceeEEeecccccCCCccceecccCC------CCEEEEEccCceEEEEe---ccCccceEEEE
Confidence 9998751 11222222111111111 22333344444 56778777665432221 1111111 244
Q ss_pred ECCeEEEEeeCCCcceEEEeCCC
Q 017349 274 LEGKLFVISEHGDCPMKQYNPDD 296 (373)
Q Consensus 274 ~~~~l~v~gg~~~~~~~~yd~~~ 296 (373)
.+|.=|+..|.....|.+|+...
T Consensus 255 wGG~gliySgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 255 WGGEGLIYSGSQDRTIKVWRALD 277 (480)
T ss_pred EcCCceEEecCCCceEEEEEccc
Confidence 57666666665555666666544
No 220
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=49.28 E-value=3.5e+02 Score=28.67 Aligned_cols=168 Identities=11% Similarity=0.042 Sum_probs=86.8
Q ss_pred CcceeEEEeCCCCceeccCCCCCcceeeeee--Ee---CCe-EEEEcCCCCCCC----CcCceEEEEeCCCC--eEEecc
Q 017349 145 PMQSTIMYRATTNQWQLASPMLTPRSFFASG--NV---NGK-IMAVGGTGANIN----ETMTAVECYDPESD--TWTTAA 212 (373)
Q Consensus 145 ~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~--~~---~~~-iyv~GG~~~~~~----~~~~~~~~yd~~t~--~W~~~~ 212 (373)
..+.+.++|+.+++-..+-.+...-..++++ .+ +.. +..+|+...... -....++.|+...+ +-+.+.
T Consensus 851 w~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh 930 (1205)
T KOG1898|consen 851 WVSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLH 930 (1205)
T ss_pred ccceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeee
Confidence 4556788888887655443333221112222 12 222 444454431010 01223677765433 333343
Q ss_pred CCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCceeecccCcc-CCcceEEEEECCeEEEEeeCCCcceEE
Q 017349 213 KLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMK-EGWTGISIVLEGKLFVISEHGDCPMKQ 291 (373)
Q Consensus 213 ~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~-~~~~~~~~~~~~~l~v~gg~~~~~~~~ 291 (373)
.-..+-.-++.+.+.|.+++--| +.+.+||+..++=.+.-.... +...........+|+|-.-..+-.+.+
T Consensus 931 ~T~~~~~v~Ai~~f~~~~LagvG--------~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~ 1002 (1205)
T KOG1898|consen 931 KTEIPGPVGAICPFQGRVLAGVG--------RFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVR 1002 (1205)
T ss_pred ccCCCccceEEeccCCEEEEecc--------cEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEE
Confidence 33333333455666776655444 568999998776433221111 111122245566676654444556778
Q ss_pred EeCCCCceeeecCCCCCCcccccceEEEEeCCE
Q 017349 292 YNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGK 324 (373)
Q Consensus 292 yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (373)
|+++.|+...+..-|.| |.-.++..++..
T Consensus 1003 y~~~~n~l~~fadD~~p----R~Vt~~~~lD~~ 1031 (1205)
T KOG1898|consen 1003 YRREDNQLIVFADDPVP----RHVTALELLDYD 1031 (1205)
T ss_pred EecCCCeEEEEeCCCcc----ceeeEEEEecCC
Confidence 99999999988876777 555555555433
No 221
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=48.72 E-value=2.5e+02 Score=26.93 Aligned_cols=175 Identities=10% Similarity=0.023 Sum_probs=87.3
Q ss_pred eEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCC-ccee
Q 017349 93 QWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLT-PRSF 171 (373)
Q Consensus 93 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-~r~~ 171 (373)
.++.++-.+..-..+-.+. ....++.....+|..+.+|-. ...+.+||..+.+ .+..+.. ....
T Consensus 198 ~vylW~~~s~~v~~l~~~~------~~~vtSv~ws~~G~~LavG~~-------~g~v~iwD~~~~k--~~~~~~~~h~~r 262 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFG------EELVTSVKWSPDGSHLAVGTS-------DGTVQIWDVKEQK--KTRTLRGSHASR 262 (484)
T ss_pred eEEEEecCCCceEEeEecC------CCceEEEEECCCCCEEEEeec-------CCeEEEEehhhcc--ccccccCCcCce
Confidence 3556666666655554443 133444444446777777654 2378999987764 2333332 3333
Q ss_pred eeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCcccccc-ccEEE-ECCEEEEEeCccCCCccCCceEEE
Q 017349 172 FASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLAR-YDSAV-MGSKMYVTEGWTWPFMFSPRGGVY 249 (373)
Q Consensus 172 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~-~~~~~-~~~~lyv~gG~~~~~~~~~~i~~y 249 (373)
.++...++.+...|..+ ..+..+|.....= .+..+...+.. +.... .+++....||.+ +.+.+|
T Consensus 263 vg~laW~~~~lssGsr~-------~~I~~~dvR~~~~-~~~~~~~H~qeVCgLkws~d~~~lASGgnD------N~~~Iw 328 (484)
T KOG0305|consen 263 VGSLAWNSSVLSSGSRD-------GKILNHDVRISQH-VVSTLQGHRQEVCGLKWSPDGNQLASGGND------NVVFIW 328 (484)
T ss_pred eEEEeccCceEEEecCC-------CcEEEEEEecchh-hhhhhhcccceeeeeEECCCCCeeccCCCc------cceEec
Confidence 44555678888888765 2355555543320 00111111111 11111 256666667766 788999
Q ss_pred eCCCCceeecccCccCCcceE-E-EEECCeEEEEeeCC-CcceEEEeCCCC
Q 017349 250 DINKDTWNLMSDGMKEGWTGI-S-IVLEGKLFVISEHG-DCPMKQYNPDDD 297 (373)
Q Consensus 250 d~~~~~W~~~~~~~~~~~~~~-~-~~~~~~l~v~gg~~-~~~~~~yd~~~~ 297 (373)
|.....+...-.... ...-+ + +-....|+..||.. ...+..||..++
T Consensus 329 d~~~~~p~~~~~~H~-aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 329 DGLSPEPKFTFTEHT-AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred cCCCccccEEEeccc-eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC
Confidence 883333211100000 00000 1 23456677776644 455666677654
No 222
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=48.66 E-value=2.7e+02 Score=27.61 Aligned_cols=67 Identities=19% Similarity=0.438 Sum_probs=41.0
Q ss_pred ccCCEEEEEcCccCCCCCCcceeEEEeCCCCceecc--------CCCC-Ccce-eeeeeE-eCCeEEEEcCCCCCCCCcC
Q 017349 127 PRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLA--------SPML-TPRS-FFASGN-VNGKIMAVGGTGANINETM 195 (373)
Q Consensus 127 ~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~--------~~~~-~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~ 195 (373)
..++.+++.||.+. .+++||..+..-+.+ .+++ -++. -++++. -.+.+++-||..
T Consensus 127 ak~~~lvaSgGLD~-------~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte------- 192 (735)
T KOG0308|consen 127 AKNNELVASGGLDR-------KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE------- 192 (735)
T ss_pred ccCceeEEecCCCc-------cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc-------
Confidence 56889999999842 577777765533222 1232 1222 223332 235688888875
Q ss_pred ceEEEEeCCCCe
Q 017349 196 TAVECYDPESDT 207 (373)
Q Consensus 196 ~~~~~yd~~t~~ 207 (373)
..+..||+.+++
T Consensus 193 k~lr~wDprt~~ 204 (735)
T KOG0308|consen 193 KDLRLWDPRTCK 204 (735)
T ss_pred cceEEecccccc
Confidence 578999999875
No 223
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=47.53 E-value=2.6e+02 Score=26.73 Aligned_cols=52 Identities=13% Similarity=0.085 Sum_probs=31.1
Q ss_pred ceEEEeCCCC----ceeecccCccCCcceEE-EEECCeEEEEeeCCCcceEEEeCCCCcee
Q 017349 245 RGGVYDINKD----TWNLMSDGMKEGWTGIS-IVLEGKLFVISEHGDCPMKQYNPDDDTWR 300 (373)
Q Consensus 245 ~i~~yd~~~~----~W~~~~~~~~~~~~~~~-~~~~~~l~v~gg~~~~~~~~yd~~~~~W~ 300 (373)
.+-.||.... .|.+... .+..+.+ ...+..|++-=|. ...|..||...+.-+
T Consensus 188 ~VtlwDv~g~sp~~~~~~~Hs---AP~~gicfspsne~l~vsVG~-Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHS---APCRGICFSPSNEALLVSVGY-DKKINIYDIRSQAST 244 (673)
T ss_pred eEEEEeccCCCcccchhhhcc---CCcCcceecCCccceEEEecc-cceEEEeeccccccc
Confidence 4566776544 3555443 2333333 4567888886665 568899998755433
No 224
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=44.99 E-value=2.1e+02 Score=25.02 Aligned_cols=37 Identities=8% Similarity=0.233 Sum_probs=22.3
Q ss_pred CCEEEEEeCCceeeeeEEEEeecCCcccceEEecCCCCc
Q 017349 322 EGKIYVVSSGLNVAIGRVYEEQNGGISAEWKVMTAPRAF 360 (373)
Q Consensus 322 ~~~l~i~GG~~~~~~~~~~~~~~d~~~~~W~~~~~p~~~ 360 (373)
+.+|++|||...+..+.. ...+-+--.|+.+...+-+
T Consensus 158 ~h~LLlVgG~~~~~~~~s--~a~~~GLtaWRiL~~~Pyy 194 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMS--KASSCGLTAWRILSDSPYY 194 (282)
T ss_pred CCCEEEEeccCCCCCccc--cccccCceEEEEcCCCCcE
Confidence 347999999876542221 1245566778877664433
No 225
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=44.50 E-value=4e+02 Score=28.01 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=83.3
Q ss_pred CeEEEEcCCCC---CCCCcCceEEEEeCCC-CeEEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCC
Q 017349 179 GKIMAVGGTGA---NINETMTAVECYDPES-DTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKD 254 (373)
Q Consensus 179 ~~iyv~GG~~~---~~~~~~~~~~~yd~~t-~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~ 254 (373)
+..|++|-.-. ......-.+.+|.... ++-+.++.+...-.-.+.+.++|++...-| ..+-.|+..++
T Consensus 787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In--------~~vrLye~t~~ 858 (1096)
T KOG1897|consen 787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGIN--------QSVRLYEWTTE 858 (1096)
T ss_pred ceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecC--------cEEEEEEcccc
Confidence 56666664210 0112233466666555 666666666655555566777888765433 46778887666
Q ss_pred ceeecccCccCCcceEE-EEECCeEEEEeeCCCcceEEEeCCCCceeeecCCCCCCcccccceEEEEeCCEEEEEeCC
Q 017349 255 TWNLMSDGMKEGWTGIS-IVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSG 331 (373)
Q Consensus 255 ~W~~~~~~~~~~~~~~~-~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~ 331 (373)
+=-.+......+....- -+.++.|++..-...-.+..|+...+...+++.-=.| +.-.++..+++..|+.+-.
T Consensus 859 ~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p----~Wmtaveil~~d~ylgae~ 932 (1096)
T KOG1897|consen 859 RELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNP----NWMTAVEILDDDTYLGAEN 932 (1096)
T ss_pred ceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCc----cceeeEEEecCceEEeecc
Confidence 21111111111111111 3567888876555566888999999999999863344 5566777888888887654
No 226
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=44.45 E-value=1.5e+02 Score=27.01 Aligned_cols=68 Identities=10% Similarity=0.150 Sum_probs=37.9
Q ss_pred CEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEE-EECCeEEEEeeCCCcceEEEeCCCCceeeecC
Q 017349 228 SKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISI-VLEGKLFVISEHGDCPMKQYNPDDDTWRYVGG 304 (373)
Q Consensus 228 ~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~ 304 (373)
|+=++.|+++ .+|-+|....+.=+.+-. .....+-.++ ..-+.=||+.|.+...+..|- .+.|+.++.
T Consensus 284 G~EfvsgsyD------ksIRIf~~~~~~SRdiYh-tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk--a~Aseklgv 352 (433)
T KOG0268|consen 284 GQEFVSGSYD------KSIRIFPVNHGHSRDIYH-TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK--AKASEKLGV 352 (433)
T ss_pred cchhcccccc------ceEEEeecCCCcchhhhh-HhhhheeeEEEEeccccEEEecCCCcceeeee--cchhhhcCC
Confidence 6667778777 678888877666555432 1111111122 224555777776655555543 456777663
No 227
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=43.76 E-value=2.9e+02 Score=26.13 Aligned_cols=150 Identities=13% Similarity=-0.028 Sum_probs=77.4
Q ss_pred eeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCccee
Q 017349 92 IQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSF 171 (373)
Q Consensus 92 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~ 171 (373)
.+++..|..+..=..+...+... ..-.....+.+|.+..-. ....++|.+|..+++-.++......-..
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~------~~P~fspDG~~l~f~~~r-----dg~~~iy~~dl~~~~~~~Lt~~~gi~~~ 286 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNN------GAPAFSPDGSKLAFSSSR-----DGSPDIYLMDLDGKNLPRLTNGFGINTS 286 (425)
T ss_pred ceEEEEeccCCccceeeccCCcc------CCccCCCCCCEEEEEECC-----CCCccEEEEcCCCCcceecccCCccccC
Confidence 45677777776655554433111 111111113344433322 2345899999999874444333222222
Q ss_pred eeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeC
Q 017349 172 FASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDI 251 (373)
Q Consensus 172 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~ 251 (373)
.+...-+.+|+...... -...++++|++..+=+.+..-..... .....-+|+.+++-+.. .+. ..+..+|+
T Consensus 287 Ps~spdG~~ivf~Sdr~-----G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~~~~-~g~--~~i~~~~~ 357 (425)
T COG0823 287 PSWSPDGSKIVFTSDRG-----GRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFESSS-GGQ--WDIDKNDL 357 (425)
T ss_pred ccCCCCCCEEEEEeCCC-----CCcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEEecc-CCc--eeeEEecc
Confidence 33333455565553332 23379999998887555532111111 22223366655554432 111 57899999
Q ss_pred CCCc-eeeccc
Q 017349 252 NKDT-WNLMSD 261 (373)
Q Consensus 252 ~~~~-W~~~~~ 261 (373)
.++. |+.+..
T Consensus 358 ~~~~~~~~lt~ 368 (425)
T COG0823 358 ASGGKIRILTS 368 (425)
T ss_pred CCCCcEEEccc
Confidence 8887 887754
No 228
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=43.70 E-value=3.6e+02 Score=27.30 Aligned_cols=51 Identities=16% Similarity=0.162 Sum_probs=28.0
Q ss_pred CCEEEEEeCccCCCccCCceEEEeCCCCceee--cccCccCCcceEEEEECCeEEEEeeCC
Q 017349 227 GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNL--MSDGMKEGWTGISIVLEGKLFVISEHG 285 (373)
Q Consensus 227 ~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~--~~~~~~~~~~~~~~~~~~~l~v~gg~~ 285 (373)
+|++.++|=.+ +.+-+|=..+-++-. ...-+| -...-...+.++++.|+.+
T Consensus 519 dgk~LaVsLLd------nTVkVyflDtlKFflsLYGHkLP--V~smDIS~DSklivTgSAD 571 (888)
T KOG0306|consen 519 DGKLLAVSLLD------NTVKVYFLDTLKFFLSLYGHKLP--VLSMDISPDSKLIVTGSAD 571 (888)
T ss_pred CCcEEEEEecc------CeEEEEEecceeeeeeecccccc--eeEEeccCCcCeEEeccCC
Confidence 68888777655 566777666666532 121111 1111134567777777654
No 229
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=42.44 E-value=48 Score=23.40 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=32.4
Q ss_pred cCCceEEEeCCCCceeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEeCC
Q 017349 242 FSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPD 295 (373)
Q Consensus 242 ~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~ 295 (373)
....+..||+.+++.+.+...+.. -.+.+..-++..+++.......|.+|-++
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~f-pNGVals~d~~~vlv~Et~~~Ri~rywl~ 87 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYF-PNGVALSPDESFVLVAETGRYRILRYWLK 87 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESS-EEEEEE-TTSSEEEEEEGGGTEEEEEESS
T ss_pred CCcCEEEEECCCCeEEEehhCCCc-cCeEEEcCCCCEEEEEeccCceEEEEEEe
Confidence 345789999999999887653321 12222344666666665556688888654
No 230
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=41.11 E-value=3e+02 Score=25.64 Aligned_cols=151 Identities=13% Similarity=0.111 Sum_probs=81.1
Q ss_pred EEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCC---ceeccCCCCCcceeeeeeEeC-CeEEEEcCCCCCCCCcCce
Q 017349 122 ACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTN---QWQLASPMLTPRSFFASGNVN-GKIMAVGGTGANINETMTA 197 (373)
Q Consensus 122 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~---~W~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~ 197 (373)
.+++...++.=+|.|+.+ ..+..+|..-| .|+-... ++..-.+...+ ..+++++ .+ ..
T Consensus 316 ~sc~W~pDg~~~V~Gs~d-------r~i~~wdlDgn~~~~W~gvr~---~~v~dlait~Dgk~vl~v~-~d-------~~ 377 (519)
T KOG0293|consen 316 SSCAWCPDGFRFVTGSPD-------RTIIMWDLDGNILGNWEGVRD---PKVHDLAITYDGKYVLLVT-VD-------KK 377 (519)
T ss_pred ceeEEccCCceeEecCCC-------CcEEEecCCcchhhccccccc---ceeEEEEEcCCCcEEEEEe-cc-------cc
Confidence 344445578888888763 25777887766 6876654 44443333444 4555554 32 34
Q ss_pred EEEEeCCCCeEEeccCCccccccccEE-EECCEEEEEeCccCCCccCCceEEEeCCCCceeecccC--ccCCcce--EEE
Q 017349 198 VECYDPESDTWTTAAKLRMGLARYDSA-VMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDG--MKEGWTG--ISI 272 (373)
Q Consensus 198 ~~~yd~~t~~W~~~~~~~~~~~~~~~~-~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~--~~~~~~~--~~~ 272 (373)
+..|+.++..=+.+-.. ...-++.. .-++++.++.=.+ +.+..+|.+ .|..+..- ...+.+- .+.
T Consensus 378 i~l~~~e~~~dr~lise--~~~its~~iS~d~k~~LvnL~~------qei~LWDl~--e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 378 IRLYNREARVDRGLISE--EQPITSFSISKDGKLALVNLQD------QEIHLWDLE--ENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred eeeechhhhhhhccccc--cCceeEEEEcCCCcEEEEEccc------CeeEEeecc--hhhHHHHhhcccccceEEEecc
Confidence 66777766543322111 11112222 2267777665433 678899998 45444331 1222211 111
Q ss_pred EECCeEEEEeeCCCcceEEEeCCCCcee
Q 017349 273 VLEGKLFVISEHGDCPMKQYNPDDDTWR 300 (373)
Q Consensus 273 ~~~~~l~v~gg~~~~~~~~yd~~~~~W~ 300 (373)
...+.-+|+.|.....+++++..++.-.
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~sgkll 475 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRISGKLL 475 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccCCcee
Confidence 2233356666666778899888776543
No 231
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=40.81 E-value=3.2e+02 Score=25.74 Aligned_cols=184 Identities=8% Similarity=0.100 Sum_probs=86.1
Q ss_pred ceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCce-eccCCCCCcc
Q 017349 91 RIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQW-QLASPMLTPR 169 (373)
Q Consensus 91 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~r 169 (373)
.+.++++|..-+---++..+.... .-+++-.+ ++.+|++.=. -..-+++.|...-.= +-+..+..|-
T Consensus 405 ~N~vYilDe~lnvvGkltGl~~gE----RIYAvRf~--gdv~yiVTfr------qtDPlfviDlsNPenPkvlGeLKIPG 472 (603)
T COG4880 405 VNAVYILDENLNVVGKLTGLAPGE----RIYAVRFV--GDVLYIVTFR------QTDPLFVIDLSNPENPKVLGELKIPG 472 (603)
T ss_pred cceeEEEcCCCcEEEEEeccCCCc----eEEEEEEe--CceEEEEEEe------ccCceEEEEcCCCCCCceeEEEecCC
Confidence 366788888877777776665232 34555555 7777776432 123466777544321 1122332222
Q ss_pred eeeeeeEeC-CeEEEEcCCCCCCCCcCceEEEEeCCCCeE-Eecc------CCccccccccEEEECC--EEEEEeCccCC
Q 017349 170 SFFASGNVN-GKIMAVGGTGANINETMTAVECYDPESDTW-TTAA------KLRMGLARYDSAVMGS--KMYVTEGWTWP 239 (373)
Q Consensus 170 ~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W-~~~~------~~~~~~~~~~~~~~~~--~lyv~gG~~~~ 239 (373)
...-+--++ +.+.-+|-.+ ++ -.+-.||...-.= +++. -.....+.|.+...+. .|+++-.+.
T Consensus 473 fS~YLHpigen~~lGvG~~~--g~---vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~-- 545 (603)
T COG4880 473 FSEYLHPIGENRLLGVGAYQ--GG---VKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYL-- 545 (603)
T ss_pred chhhccccCCCcEEEeeccc--CC---ceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEecccC--
Confidence 221122233 3444444332 11 2234444432110 0110 0112234556666643 355443222
Q ss_pred CccCCceEEEeCCCCceeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEeCCCCceeeecC
Q 017349 240 FMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGG 304 (373)
Q Consensus 240 ~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~ 304 (373)
..++|-.+.+.=-.... -...-.--+...++.+|++||. .+|++| .+.|+.++.
T Consensus 546 -----~gyif~iedg~kl~k~~-e~k~na~RA~fi~dylY~vg~~---ev~~ld--enswe~Vge 599 (603)
T COG4880 546 -----GGYIFFIEDGSKLRKRA-ERKLNADRAFFIKDYLYLVGGN---EVWKLD--ENSWEVVGE 599 (603)
T ss_pred -----ccEEEEEecCceeeehh-hhcccceeeEEecceEEEeccc---eeEEec--cchHhhhhh
Confidence 12344333331111110 0111111235679999999987 889988 568998875
No 232
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=40.51 E-value=2.4e+02 Score=24.28 Aligned_cols=222 Identities=11% Similarity=0.096 Sum_probs=99.5
Q ss_pred CCCCeeeCCCCCCCCCCCCCceE--EEEeccCCEEEEEcCc--cCCCCCCcceeEEEeCC-CCceeccCCCCCc------
Q 017349 100 RSGRWFVLPPMPCPKAVCPQAFA--CTSLPRQGKLFVLGGM--RSDTETPMQSTIMYRAT-TNQWQLASPMLTP------ 168 (373)
Q Consensus 100 ~~~~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~v~GG~--~~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~------ 168 (373)
.-.+|.....+.... .....++ +.+...+++|+++-.. ...........+..... -.+|.....++..
T Consensus 28 ~G~tWs~~~~v~~~~-~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~ 106 (275)
T PF13088_consen 28 GGKTWSEPRIVADGP-KPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFS 106 (275)
T ss_dssp CTTEEEEEEEEETST-BTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCE
T ss_pred CCCeeCCCEEEeecc-ccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCcccccccccccee
Confidence 346697754333111 1112233 2333348899888622 11111222222344444 3489876543321
Q ss_pred --ceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCC-CeEEeccCCccc-cccc-cEEE-ECCEEEEEeCccCCCcc
Q 017349 169 --RSFFASGNVNGKIMAVGGTGANINETMTAVECYDPES-DTWTTAAKLRMG-LARY-DSAV-MGSKMYVTEGWTWPFMF 242 (373)
Q Consensus 169 --r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t-~~W~~~~~~~~~-~~~~-~~~~-~~~~lyv~gG~~~~~~~ 242 (373)
-....+..-++++++..-.. ..........|.... .+|+.....+.. .... +.+. -+|+|+++.-.. ...
T Consensus 107 ~~~~~~~i~~~~G~l~~~~~~~--~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~- 182 (275)
T PF13088_consen 107 GPGRGPPIQLPDGRLIAPYYHE--SGGSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GND- 182 (275)
T ss_dssp ECSEEEEEEECTTEEEEEEEEE--SSCEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SST-
T ss_pred ccceeeeeEecCCCEEEEEeec--cccCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CCC-
Confidence 11112334477888762111 111233344455544 469887655422 2222 2222 378888876432 111
Q ss_pred CCceEEEeCCC-Cceeeccc-CccCCcceEEEEE--CCeEEEEeeCC----CcceEEEeCCCCceeeecCCCCCC-cccc
Q 017349 243 SPRGGVYDINK-DTWNLMSD-GMKEGWTGISIVL--EGKLFVISEHG----DCPMKQYNPDDDTWRYVGGDKFPC-EVMH 313 (373)
Q Consensus 243 ~~~i~~yd~~~-~~W~~~~~-~~~~~~~~~~~~~--~~~l~v~gg~~----~~~~~~yd~~~~~W~~~~~~~~~~-~~~~ 313 (373)
...+.+-... .+|+.... ..+........+. +|+++++.... ...+..-.-...+|.....+.... ....
T Consensus 183 -~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~ 261 (275)
T PF13088_consen 183 -DIYISRSTDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSG 261 (275)
T ss_dssp -EEEEEEESSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEE
T ss_pred -cEEEEEECCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEE
Confidence 2233333333 36987542 2333333333222 67888887631 223333333467898765433220 1122
Q ss_pred cceEEEEeCCEEEE
Q 017349 314 RPFAVNGVEGKIYV 327 (373)
Q Consensus 314 ~~~~~~~~~~~l~i 327 (373)
+...+..-+|+|+|
T Consensus 262 Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 262 YPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEEEETTEEEE
T ss_pred CCeeEEeCCCcCCC
Confidence 33333445678886
No 233
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=40.10 E-value=3.1e+02 Score=25.54 Aligned_cols=134 Identities=13% Similarity=0.154 Sum_probs=74.4
Q ss_pred eeEEEeCCCCceeccCCCCCcceeeeeeEe-CCeEEEEcCCCCCCCCcCceEEEEeCCCC---eEEeccCCccccccccE
Q 017349 148 STIMYRATTNQWQLASPMLTPRSFFASGNV-NGKIMAVGGTGANINETMTAVECYDPESD---TWTTAAKLRMGLARYDS 223 (373)
Q Consensus 148 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~t~---~W~~~~~~~~~~~~~~~ 223 (373)
.+..+|..|+.-...-+-..+-...+++-+ ++.=+|.|+.+ ..+..+|...+ .|+-+.. ++-..-+
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d-------r~i~~wdlDgn~~~~W~gvr~---~~v~dla 361 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD-------RTIIMWDLDGNILGNWEGVRD---PKVHDLA 361 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC-------CcEEEecCCcchhhccccccc---ceeEEEE
Confidence 478889888865544322222333333333 66778888765 45667776654 5876643 3333334
Q ss_pred EEECCE-EEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEeCCCCceeee
Q 017349 224 AVMGSK-MYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYV 302 (373)
Q Consensus 224 ~~~~~~-lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~ 302 (373)
...+|+ ++.++ .+ ..+..|+.++..=..+-. ...+....+..-++++.++.=. ...+..+|.+ .|..+
T Consensus 362 it~Dgk~vl~v~-~d------~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~-~qei~LWDl~--e~~lv 430 (519)
T KOG0293|consen 362 ITYDGKYVLLVT-VD------KKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQ-DQEIHLWDLE--ENKLV 430 (519)
T ss_pred EcCCCcEEEEEe-cc------cceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcc-cCeeEEeecc--hhhHH
Confidence 455665 55554 33 467777776543221111 1222333345567887777543 5688889987 44444
No 234
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=39.77 E-value=3.6e+02 Score=26.05 Aligned_cols=131 Identities=17% Similarity=0.174 Sum_probs=64.2
Q ss_pred CCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEE--CCEEEEEeCccCCCccCCceEEEeCCCCc
Q 017349 178 NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVM--GSKMYVTEGWTWPFMFSPRGGVYDINKDT 255 (373)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~i~~yd~~~~~ 255 (373)
++...++||.+ ..+++|.+..+.=.+...+...+.....+.+ ++.++..|-.. ..+..||.+++.
T Consensus 454 ~~~~vaVGG~D-------gkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~------rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 454 DGSEVAVGGQD-------GKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS------RKVVLYDVASRE 520 (603)
T ss_pred CCCEEEEeccc-------ceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccC------CcEEEEEcccCc
Confidence 34555666664 2488888776553333333333333333333 55555554433 578888887664
Q ss_pred -----eeecccCccCCcceEEE-EECCeEEEEeeCCCcceEEEeCCCCceeeecCCCCCCcccccceEEEEeCCEEEEEe
Q 017349 256 -----WNLMSDGMKEGWTGISI-VLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVS 329 (373)
Q Consensus 256 -----W~~~~~~~~~~~~~~~~-~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~G 329 (373)
|..-. .+....+ .-+++++..|+. ...+.+|+.++-.=..+..-..+ ..-..+.-+++.=++-.
T Consensus 521 ~~~~~w~FHt-----akI~~~aWsP~n~~vATGSl-Dt~Viiysv~kP~~~i~iknAH~----~gVn~v~wlde~tvvSs 590 (603)
T KOG0318|consen 521 VKTNRWAFHT-----AKINCVAWSPNNKLVATGSL-DTNVIIYSVKKPAKHIIIKNAHL----GGVNSVAWLDESTVVSS 590 (603)
T ss_pred eecceeeeee-----eeEEEEEeCCCceEEEeccc-cceEEEEEccChhhheEeccccc----cCceeEEEecCceEEec
Confidence 32211 0111101 125666666655 56788888765322222111222 23344555555555555
Q ss_pred CC
Q 017349 330 SG 331 (373)
Q Consensus 330 G~ 331 (373)
|.
T Consensus 591 G~ 592 (603)
T KOG0318|consen 591 GQ 592 (603)
T ss_pred cC
Confidence 53
No 235
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=39.22 E-value=3.8e+02 Score=26.25 Aligned_cols=159 Identities=12% Similarity=0.129 Sum_probs=83.3
Q ss_pred eeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEEC
Q 017349 148 STIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMG 227 (373)
Q Consensus 148 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~ 227 (373)
.+.+||..++.--.+-.- .-..-..+.+++.+.+.|..+ ..+-+||+.+.+.-. .+...-..-....++
T Consensus 312 tVkVW~v~n~~~l~l~~~--h~~~V~~v~~~~~~lvsgs~d-------~~v~VW~~~~~~cl~--sl~gH~~~V~sl~~~ 380 (537)
T KOG0274|consen 312 TVKVWDVTNGACLNLLRG--HTGPVNCVQLDEPLLVSGSYD-------GTVKVWDPRTGKCLK--SLSGHTGRVYSLIVD 380 (537)
T ss_pred eEEEEeccCcceEEEecc--ccccEEEEEecCCEEEEEecC-------ceEEEEEhhhceeee--eecCCcceEEEEEec
Confidence 688888875543322110 111112334566777777665 258888888665422 222211111123445
Q ss_pred C-EEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCc-ceEEEEECCeEEEEeeCCCcceEEEeCCCCceeeecCC
Q 017349 228 S-KMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGW-TGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGD 305 (373)
Q Consensus 228 ~-~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~-~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~ 305 (373)
+ ..++-|+.+ ..|.++|+.+.. +.+.. +.... .-....+.+++++-+.. ...+..+|.++++-...-..
T Consensus 381 ~~~~~~Sgs~D------~~IkvWdl~~~~-~c~~t-l~~h~~~v~~l~~~~~~Lvs~~a-D~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 381 SENRLLSGSLD------TTIKVWDLRTKR-KCIHT-LQGHTSLVSSLLLRDNFLVSSSA-DGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred CcceEEeeeec------cceEeecCCchh-hhhhh-hcCCcccccccccccceeEeccc-cccEEEeecccCceeeeecc
Confidence 5 555566655 678899998775 22211 11111 11123456777776655 56889999888766655432
Q ss_pred CCCCcccccceEEEEeCCEEEEEeCC
Q 017349 306 KFPCEVMHRPFAVNGVEGKIYVVSSG 331 (373)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~l~i~GG~ 331 (373)
+ + .....++..+...++..+.
T Consensus 452 ~-~----~~~v~~l~~~~~~il~s~~ 472 (537)
T KOG0274|consen 452 R-H----VGGVSALALGKEEILCSSD 472 (537)
T ss_pred C-C----cccEEEeecCcceEEEEec
Confidence 2 1 2334444444566666663
No 236
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=37.86 E-value=66 Score=17.06 Aligned_cols=26 Identities=15% Similarity=0.274 Sum_probs=16.5
Q ss_pred EECCEEEEEeCccCCCccCCceEEEeCCCCc--ee
Q 017349 225 VMGSKMYVTEGWTWPFMFSPRGGVYDINKDT--WN 257 (373)
Q Consensus 225 ~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~--W~ 257 (373)
..++.+|+... + ..++++|.++++ |+
T Consensus 4 ~~~~~v~~~~~-~------g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 4 LSDGTVYVGST-D------GTLYALDAKTGEILWT 31 (33)
T ss_pred EECCEEEEEcC-C------CEEEEEEcccCcEEEE
Confidence 34566665432 2 578899988774 64
No 237
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=37.66 E-value=3.8e+02 Score=25.76 Aligned_cols=66 Identities=21% Similarity=0.295 Sum_probs=38.9
Q ss_pred CCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccc-ccccc-EEEECCEEEEEeCccCCCccCCceEEEeCCCCc
Q 017349 178 NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMG-LARYD-SAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT 255 (373)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-~~~~~-~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~ 255 (373)
+++-.++||+- ..+-++|..+-+=+.-..++.. ...++ ++..+.++.+..-.+ ..|.+||+.+..
T Consensus 476 dgrtLivGGea-------stlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsd------GnI~vwDLhnq~ 542 (705)
T KOG0639|consen 476 DGRTLIVGGEA-------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSD------GNIAVWDLHNQT 542 (705)
T ss_pred CCceEEecccc-------ceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccC------CcEEEEEcccce
Confidence 67888889873 4577788776654433444442 12222 333466655443333 468899998776
Q ss_pred e
Q 017349 256 W 256 (373)
Q Consensus 256 W 256 (373)
-
T Consensus 543 ~ 543 (705)
T KOG0639|consen 543 L 543 (705)
T ss_pred e
Confidence 4
No 238
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.44 E-value=3e+02 Score=24.58 Aligned_cols=129 Identities=10% Similarity=0.088 Sum_probs=75.0
Q ss_pred CceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcce--eeeeeEeCC-eEEEEcCCCCCCCCcC
Q 017349 119 QAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRS--FFASGNVNG-KIMAVGGTGANINETM 195 (373)
Q Consensus 119 ~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~--~~~~~~~~~-~iyv~GG~~~~~~~~~ 195 (373)
..|+.++......+.+|+-. +-.-..++|+.+++-...-..+..|. .|++..-++ .+|.-=.. .....
T Consensus 6 RgH~~a~~p~~~~avafaRR------PG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd---~~~g~ 76 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARR------PGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEND---YETGR 76 (305)
T ss_pred cccceeeCCCCCeEEEEEeC------CCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccc---cCCCc
Confidence 45677766656788888754 33368899999997554333344555 455555544 45554221 23334
Q ss_pred ceEEEEeCCCCeEEeccCCccc-cccccEEEE-CC-EEEEE-eCccCC----------CccCCceEEEeCCCCcee
Q 017349 196 TAVECYDPESDTWTTAAKLRMG-LARYDSAVM-GS-KMYVT-EGWTWP----------FMFSPRGGVYDINKDTWN 257 (373)
Q Consensus 196 ~~~~~yd~~t~~W~~~~~~~~~-~~~~~~~~~-~~-~lyv~-gG~~~~----------~~~~~~i~~yd~~~~~W~ 257 (373)
--+-+||.. +..+++...+.. ..-|-...+ +| .|.|. ||-... .....++...|..+++-.
T Consensus 77 G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll 151 (305)
T PF07433_consen 77 GVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALL 151 (305)
T ss_pred EEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCcee
Confidence 568899998 677888776653 344555554 55 34443 443211 122245666788888643
No 239
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=37.02 E-value=3.9e+02 Score=25.77 Aligned_cols=110 Identities=15% Similarity=0.224 Sum_probs=56.0
Q ss_pred EeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEe--CCeEEEEcCCCCCCCCcCceEEEEe
Q 017349 125 SLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNV--NGKIMAVGGTGANINETMTAVECYD 202 (373)
Q Consensus 125 ~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd 202 (373)
++..++.-.++||.++ .+.+|......-.....+...|...+.+.+ +++.++.|-. ...+..||
T Consensus 450 Av~~~~~~vaVGG~Dg-------kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da-------~rkvv~yd 515 (603)
T KOG0318|consen 450 AVSPDGSEVAVGGQDG-------KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA-------SRKVVLYD 515 (603)
T ss_pred EEcCCCCEEEEecccc-------eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc-------CCcEEEEE
Confidence 3333566666666522 477777766544443333344555455544 3444444332 34577777
Q ss_pred CCCCeEEeccCCc--cccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCc
Q 017349 203 PESDTWTTAAKLR--MGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT 255 (373)
Q Consensus 203 ~~t~~W~~~~~~~--~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~ 255 (373)
.+++.- ....+. .+|-..-+-.-++++...|+.+ ..+.+|+.+.-.
T Consensus 516 ~~s~~~-~~~~w~FHtakI~~~aWsP~n~~vATGSlD------t~Viiysv~kP~ 563 (603)
T KOG0318|consen 516 VASREV-KTNRWAFHTAKINCVAWSPNNKLVATGSLD------TNVIIYSVKKPA 563 (603)
T ss_pred cccCce-ecceeeeeeeeEEEEEeCCCceEEEecccc------ceEEEEEccChh
Confidence 766542 111111 1111111112267777777766 678888876543
No 240
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=36.50 E-value=3.2e+02 Score=24.55 Aligned_cols=62 Identities=13% Similarity=0.227 Sum_probs=33.4
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCccee--eeee-EeCCeEEEEcCCCCCCCCcCceEEEEeCCC
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSF--FASG-NVNGKIMAVGGTGANINETMTAVECYDPES 205 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~--~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t 205 (373)
.|.+...|-. ++ .+.+||..|.. ++.+..+... .+++ .-+++..+-...+ +++-.+|...
T Consensus 34 ~G~~lAvGc~--nG-----~vvI~D~~T~~---iar~lsaH~~pi~sl~WS~dgr~LltsS~D-------~si~lwDl~~ 96 (405)
T KOG1273|consen 34 WGDYLAVGCA--NG-----RVVIYDFDTFR---IARMLSAHVRPITSLCWSRDGRKLLTSSRD-------WSIKLWDLLK 96 (405)
T ss_pred Ccceeeeecc--CC-----cEEEEEccccc---hhhhhhccccceeEEEecCCCCEeeeecCC-------ceeEEEeccC
Confidence 4555555543 22 69999999986 3333333222 2222 2256666655544 4566666665
Q ss_pred Ce
Q 017349 206 DT 207 (373)
Q Consensus 206 ~~ 207 (373)
++
T Consensus 97 gs 98 (405)
T KOG1273|consen 97 GS 98 (405)
T ss_pred CC
Confidence 54
No 241
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.13 E-value=3.5e+02 Score=24.94 Aligned_cols=106 Identities=13% Similarity=0.278 Sum_probs=55.5
Q ss_pred CeEEEEcCCCCCCCCcCceEEEEeCCCC--eEEecc------CCccccccccEEEECC----EEEEEeCccCCCccCCce
Q 017349 179 GKIMAVGGTGANINETMTAVECYDPESD--TWTTAA------KLRMGLARYDSAVMGS----KMYVTEGWTWPFMFSPRG 246 (373)
Q Consensus 179 ~~iyv~GG~~~~~~~~~~~~~~yd~~t~--~W~~~~------~~~~~~~~~~~~~~~~----~lyv~gG~~~~~~~~~~i 246 (373)
..|+.+||.. ..+.+.+||.++. .|+.-. .|-.|.-...+.++.+ ++..+..+ ..+
T Consensus 161 p~Iva~GGke-----~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~-------hqv 228 (412)
T KOG3881|consen 161 PYIVATGGKE-----NINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRY-------HQV 228 (412)
T ss_pred CceEecCchh-----cccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecc-------eeE
Confidence 4577788875 3567888888765 365432 2233333444555544 22222222 467
Q ss_pred EEEeCCCCceeeccc--CccCCcceEEEEECCeEEEEeeCCCcceEEEeCCCCc
Q 017349 247 GVYDINKDTWNLMSD--GMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDT 298 (373)
Q Consensus 247 ~~yd~~~~~W~~~~~--~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~ 298 (373)
-.||+..++ +.+.. ....+....+..-.++.+++|.. ...+..||..++.
T Consensus 229 R~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~-~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 229 RLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNT-KGQLAKFDLRGGK 280 (412)
T ss_pred EEecCcccC-cceeEeccccCcceeeeecCCCcEEEEecc-cchhheecccCce
Confidence 789998554 22211 11112222233335555445443 5678888887664
No 242
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=35.90 E-value=2.5e+02 Score=23.09 Aligned_cols=74 Identities=8% Similarity=-0.000 Sum_probs=42.1
Q ss_pred CCCcceeEEEeCCCCceeccCCCCCc-ceee--eeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCcc
Q 017349 143 ETPMQSTIMYRATTNQWQLASPMLTP-RSFF--ASGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRM 216 (373)
Q Consensus 143 ~~~~~~~~~yd~~t~~W~~~~~~~~~-r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~ 216 (373)
......+|++|..++.|..+.--+.. ...+ ..-.-+..|.++=|...+.-..--.+++|++.++.-..+-+...
T Consensus 84 eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~d 160 (200)
T PF15525_consen 84 EEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKD 160 (200)
T ss_pred cccceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeeccc
Confidence 35567899999999988765321111 2222 22223455554444321122223469999999998877765543
No 243
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=35.53 E-value=3.3e+02 Score=24.39 Aligned_cols=92 Identities=13% Similarity=0.138 Sum_probs=48.2
Q ss_pred ceEEEEeCCCCeEEeccCCccccccccEEE----E--CCEEEEEeCccCCCccCCceEEEeCCCCce-eecccCccCCcc
Q 017349 196 TAVECYDPESDTWTTAAKLRMGLARYDSAV----M--GSKMYVTEGWTWPFMFSPRGGVYDINKDTW-NLMSDGMKEGWT 268 (373)
Q Consensus 196 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~----~--~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W-~~~~~~~~~~~~ 268 (373)
+.+..||..|-+.-.-+. |. .+|..++ + .++||+.|.++ ..|-.||-.+++= +.+.........
T Consensus 238 p~~rlYdv~T~Qcfvsan-Pd--~qht~ai~~V~Ys~t~~lYvTaSkD------G~IklwDGVS~rCv~t~~~AH~gsev 308 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVSAN-PD--DQHTGAITQVRYSSTGSLYVTASKD------GAIKLWDGVSNRCVRTIGNAHGGSEV 308 (430)
T ss_pred CceeEEeccceeEeeecC-cc--cccccceeEEEecCCccEEEEeccC------CcEEeeccccHHHHHHHHhhcCCcee
Confidence 457789888766433222 22 2233221 1 68999999887 4678888777652 333321222222
Q ss_pred eEE-EEECCeEEEEeeCCCcceEEEeCCCC
Q 017349 269 GIS-IVLEGKLFVISEHGDCPMKQYNPDDD 297 (373)
Q Consensus 269 ~~~-~~~~~~l~v~gg~~~~~~~~yd~~~~ 297 (373)
..+ ..-|++.++-.|.+ ..+..|.+.++
T Consensus 309 cSa~Ftkn~kyiLsSG~D-S~vkLWEi~t~ 337 (430)
T KOG0640|consen 309 CSAVFTKNGKYILSSGKD-STVKLWEISTG 337 (430)
T ss_pred eeEEEccCCeEEeecCCc-ceeeeeeecCC
Confidence 222 23466666666643 23344444443
No 244
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=35.01 E-value=3.4e+02 Score=24.40 Aligned_cols=97 Identities=15% Similarity=0.162 Sum_probs=51.6
Q ss_pred CceEEEEeCCCCe-EEeccCCccccccccEEEE---CCEEEEEeCccCCCccCCceEEEeC-CCCceeecccCccCCcce
Q 017349 195 MTAVECYDPESDT-WTTAAKLRMGLARYDSAVM---GSKMYVTEGWTWPFMFSPRGGVYDI-NKDTWNLMSDGMKEGWTG 269 (373)
Q Consensus 195 ~~~~~~yd~~t~~-W~~~~~~~~~~~~~~~~~~---~~~lyv~gG~~~~~~~~~~i~~yd~-~~~~W~~~~~~~~~~~~~ 269 (373)
.+++++|....++ |+.+..+...-..-.++-. .++|. .++.+ ..-+++.. +.++|......+...+..
T Consensus 31 ~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-tcs~d------rnayVw~~~~~~~WkptlvLlRiNrAA 103 (361)
T KOG1523|consen 31 NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-TCSHD------RNAYVWTQPSGGTWKPTLVLLRINRAA 103 (361)
T ss_pred CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-EccCC------CCccccccCCCCeeccceeEEEeccce
Confidence 4689999999888 9988766553322222222 33444 33333 34566666 778898765433333332
Q ss_pred EEEE---ECCeEEEEeeCCCcceEEEeCCCCce
Q 017349 270 ISIV---LEGKLFVISEHGDCPMKQYNPDDDTW 299 (373)
Q Consensus 270 ~~~~---~~~~l~v~gg~~~~~~~~yd~~~~~W 299 (373)
.++. .++++-+-+|...-.+.-|.-+ |.|
T Consensus 104 t~V~WsP~enkFAVgSgar~isVcy~E~E-NdW 135 (361)
T KOG1523|consen 104 TCVKWSPKENKFAVGSGARLISVCYYEQE-NDW 135 (361)
T ss_pred eeEeecCcCceEEeccCccEEEEEEEecc-cce
Confidence 2221 2444444444434455555555 446
No 245
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=34.42 E-value=2.6e+02 Score=22.90 Aligned_cols=65 Identities=15% Similarity=0.163 Sum_probs=34.8
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCC
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESD 206 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~ 206 (373)
+.++.++-|.. ...+..||.....-.. ++........-.-+++..+++|.. . ...++++||..+.
T Consensus 71 g~~favi~g~~------~~~v~lyd~~~~~i~~---~~~~~~n~i~wsP~G~~l~~~g~~--n--~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 71 GNEFAVIYGSM------PAKVTLYDVKGKKIFS---FGTQPRNTISWSPDGRFLVLAGFG--N--LNGDLEFWDVRKK 135 (194)
T ss_pred CCEEEEEEccC------CcccEEEcCcccEeEe---ecCCCceEEEECCCCCEEEEEEcc--C--CCcEEEEEECCCC
Confidence 56666665531 1278889986333222 222111221222367788888764 1 1246889998843
No 246
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=34.25 E-value=1e+02 Score=30.33 Aligned_cols=64 Identities=14% Similarity=0.267 Sum_probs=38.7
Q ss_pred CCEEEEEeCccCCCccCCceEEEeCCCCceeec------cc-Ccc-C---CcceEEEEECCeEEEEeeCCCcceEEEeCC
Q 017349 227 GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLM------SD-GMK-E---GWTGISIVLEGKLFVISEHGDCPMKQYNPD 295 (373)
Q Consensus 227 ~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~------~~-~~~-~---~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~ 295 (373)
+..+.+.||.+ ..|+.||..++.=+.+ +. ... . +.+..+..-.+.+++-||. +..+..||+.
T Consensus 129 ~~~lvaSgGLD------~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt-ek~lr~wDpr 201 (735)
T KOG0308|consen 129 NNELVASGGLD------RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT-EKDLRLWDPR 201 (735)
T ss_pred CceeEEecCCC------ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc-ccceEEeccc
Confidence 66788889887 6899999987633222 11 111 1 1122122223446666765 7888899998
Q ss_pred CC
Q 017349 296 DD 297 (373)
Q Consensus 296 ~~ 297 (373)
++
T Consensus 202 t~ 203 (735)
T KOG0308|consen 202 TC 203 (735)
T ss_pred cc
Confidence 75
No 247
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=34.22 E-value=4.2e+02 Score=25.21 Aligned_cols=23 Identities=13% Similarity=0.404 Sum_probs=18.1
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCCCCc
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRATTNQ 158 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~ 158 (373)
+.++|++||.+. .+..||..++.
T Consensus 311 ~~n~fl~G~sd~-------ki~~wDiRs~k 333 (503)
T KOG0282|consen 311 NQNIFLVGGSDK-------KIRQWDIRSGK 333 (503)
T ss_pred CCcEEEEecCCC-------cEEEEeccchH
Confidence 449999999732 68899988876
No 248
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=33.85 E-value=2.6e+02 Score=22.84 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=36.3
Q ss_pred CCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCC
Q 017349 178 NGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKD 254 (373)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~ 254 (373)
++++.++-|.. ...+..||.+... +..++........-.-+|++.+++|... ....+..||..+.
T Consensus 71 g~~favi~g~~------~~~v~lyd~~~~~---i~~~~~~~~n~i~wsP~G~~l~~~g~~n---~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 71 GNEFAVIYGSM------PAKVTLYDVKGKK---IFSFGTQPRNTISWSPDGRFLVLAGFGN---LNGDLEFWDVRKK 135 (194)
T ss_pred CCEEEEEEccC------CcccEEEcCcccE---eEeecCCCceEEEECCCCCEEEEEEccC---CCcEEEEEECCCC
Confidence 45666665542 2368899986333 3233322222212223788888888652 2246889999843
No 249
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=33.84 E-value=92 Score=17.53 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=11.7
Q ss_pred CceEEEeCCCCc--eeec
Q 017349 244 PRGGVYDINKDT--WNLM 259 (373)
Q Consensus 244 ~~i~~yd~~~~~--W~~~ 259 (373)
..++++|..+++ |+.-
T Consensus 10 g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 10 GYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp SEEEEEETTTTSEEEEEE
T ss_pred CEEEEEECCCCCEEEeee
Confidence 578888888875 7653
No 250
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=33.63 E-value=3.5e+02 Score=24.21 Aligned_cols=137 Identities=14% Similarity=0.044 Sum_probs=67.2
Q ss_pred ceeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCe-EEecc----CCccccccc
Q 017349 147 QSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDT-WTTAA----KLRMGLARY 221 (373)
Q Consensus 147 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~-W~~~~----~~~~~~~~~ 221 (373)
+.+++||+.++.-+.... |.........-.++.|+++. ..+..+++++.. |+.+. ..+..|.+-
T Consensus 47 ~~i~r~~~~~g~~~~~~~-p~~~~~~~~~d~~g~Lv~~~----------~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND 115 (307)
T COG3386 47 GRIHRLDPETGKKRVFPS-PGGFSSGALIDAGGRLIACE----------HGVRLLDPDTGGKITLLAEPEDGLPLNRPND 115 (307)
T ss_pred CeEEEecCCcCceEEEEC-CCCcccceeecCCCeEEEEc----------cccEEEeccCCceeEEeccccCCCCcCCCCc
Confidence 378888888664333321 11111111122234444442 125566665443 34443 334445555
Q ss_pred cEEEECCEEEEEeCc-----cCCCccCCceEEEeCCCCceeecccCccCCcceEEEEECC-eEEEEeeCCCcceEEEeCC
Q 017349 222 DSAVMGSKMYVTEGW-----TWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEG-KLFVISEHGDCPMKQYNPD 295 (373)
Q Consensus 222 ~~~~~~~~lyv~gG~-----~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l~v~gg~~~~~~~~yd~~ 295 (373)
..+--+|.+|+-... .........++++|+ .+...++-......-.+.+..-++ .+|+.. .....+++|+..
T Consensus 116 ~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aD-T~~~~i~r~~~d 193 (307)
T COG3386 116 GVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD-TPANRIHRYDLD 193 (307)
T ss_pred eeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEe-CCCCeEEEEecC
Confidence 566667888875433 112233347899998 455554432111111222233355 566654 336788988776
Q ss_pred C
Q 017349 296 D 296 (373)
Q Consensus 296 ~ 296 (373)
.
T Consensus 194 ~ 194 (307)
T COG3386 194 P 194 (307)
T ss_pred c
Confidence 3
No 251
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=33.27 E-value=28 Score=24.93 Aligned_cols=26 Identities=19% Similarity=-0.083 Sum_probs=22.6
Q ss_pred CCCCCCCChHHHHHhhccCCccchhh
Q 017349 24 QPLIPGLPDEIGELCLLHVPYPYQAL 49 (373)
Q Consensus 24 ~~~~~~LP~dl~~~il~rlp~~~l~~ 49 (373)
...|..||.|+-..||..|...++..
T Consensus 69 ~~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CCchhhCCHHHHHHHHHcCCHHHHHH
Confidence 37899999999999999999887654
No 252
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=31.60 E-value=3.7e+02 Score=23.77 Aligned_cols=99 Identities=13% Similarity=0.181 Sum_probs=49.5
Q ss_pred CCEEEEEEec--C--C----CCceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEecc-C-----CEEEEEcCccCCC
Q 017349 77 LPYLFIFSFH--K--P----TARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPR-Q-----GKLFVLGGMRSDT 142 (373)
Q Consensus 77 ~~~l~~~gg~--~--~----~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~i~v~GG~~~~~ 142 (373)
.+.|+++-.. + . .....+..||+.+++-...-.+|.........+.-.++.. + +.+||.--
T Consensus 11 ~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~----- 85 (287)
T PF03022_consen 11 CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDS----- 85 (287)
T ss_dssp TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEET-----
T ss_pred CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCC-----
Confidence 5678887431 1 1 2346789999999986554444422111112232222211 1 47888732
Q ss_pred CCCcceeEEEeCCCC-ceeccCCCCCcceeeeeeEeCCeEE
Q 017349 143 ETPMQSTIMYRATTN-QWQLASPMLTPRSFFASGNVNGKIM 182 (373)
Q Consensus 143 ~~~~~~~~~yd~~t~-~W~~~~~~~~~r~~~~~~~~~~~iy 182 (373)
....+.+||..++ .|+.+.....+...+.....++..+
T Consensus 86 --~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~ 124 (287)
T PF03022_consen 86 --GGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESF 124 (287)
T ss_dssp --TTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEE
T ss_pred --CcCcEEEEEccCCcEEEEecCCcceeccccceeccCceE
Confidence 2338999999997 5766654333332223333444433
No 253
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=31.54 E-value=4.5e+02 Score=24.79 Aligned_cols=99 Identities=9% Similarity=0.061 Sum_probs=55.3
Q ss_pred CCcceeEEEeCCCCceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeE-EeccCCcccccccc
Q 017349 144 TPMQSTIMYRATTNQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTW-TTAAKLRMGLARYD 222 (373)
Q Consensus 144 ~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~~~~ 222 (373)
...+.++++|-.-+.=-++.-+...-.-.++-..++.+|++-= +...-+.+.|...-+= +.+..+..|-+..-
T Consensus 403 e~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVTf------rqtDPlfviDlsNPenPkvlGeLKIPGfS~Y 476 (603)
T COG4880 403 EPVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTF------RQTDPLFVIDLSNPENPKVLGELKIPGFSEY 476 (603)
T ss_pred CccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEEE------eccCceEEEEcCCCCCCceeEEEecCCchhh
Confidence 5678999999888765555554433334466667888888732 2344566776654332 22344444443333
Q ss_pred EEEE-CCEEEEEeCccCCCccCCceEEEeCC
Q 017349 223 SAVM-GSKMYVTEGWTWPFMFSPRGGVYDIN 252 (373)
Q Consensus 223 ~~~~-~~~lyv~gG~~~~~~~~~~i~~yd~~ 252 (373)
..-+ ++++.=+|-+.+ .-.+-.||.+
T Consensus 477 LHpigen~~lGvG~~~g----~vKiSLFdiS 503 (603)
T COG4880 477 LHPIGENRLLGVGAYQG----GVKISLFDIS 503 (603)
T ss_pred ccccCCCcEEEeecccC----CceEEEEecc
Confidence 3333 455555554431 1356667765
No 254
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=31.04 E-value=3e+02 Score=22.61 Aligned_cols=76 Identities=7% Similarity=-0.021 Sum_probs=42.0
Q ss_pred ceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcc
Q 017349 91 RIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPR 169 (373)
Q Consensus 91 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r 169 (373)
...++.+|..++.|..+.--+... .+...+..=.. ..+.++++|...+. -.--..+|+|++.++.-..+-+.....
T Consensus 87 iGkIYIkn~~~~~~~~L~i~~~~~-k~sPK~i~WiD-D~~L~vIIG~a~GT-vS~GGnLy~~nl~tg~~~~ly~~~dkk 162 (200)
T PF15525_consen 87 IGKIYIKNLNNNNWWSLQIDQNEE-KYSPKYIEWID-DNNLAVIIGYAHGT-VSKGGNLYKYNLNTGNLTELYEWKDKK 162 (200)
T ss_pred ceeEEEEecCCCceEEEEecCccc-ccCCceeEEec-CCcEEEEEccccce-EccCCeEEEEEccCCceeEeeeccccc
Confidence 456899999999987663222111 11122222122 13344455533211 123348999999999988887665433
No 255
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=30.58 E-value=5.2e+02 Score=25.22 Aligned_cols=93 Identities=13% Similarity=0.209 Sum_probs=52.5
Q ss_pred CcceeEEEeCCCCceeccC--CCCCcce-eeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCe--EEeccCCccccc
Q 017349 145 PMQSTIMYRATTNQWQLAS--PMLTPRS-FFASGNVNGKIMAVGGTGANINETMTAVECYDPESDT--WTTAAKLRMGLA 219 (373)
Q Consensus 145 ~~~~~~~yd~~t~~W~~~~--~~~~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~ 219 (373)
..-+..+|+...++-+.+. .+|.+-. ...+..-.....++|-.+ .++..||..++. +.+.+-+|.
T Consensus 234 ~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~D-------gSiiLyD~~~~~t~~~ka~~~P~--- 303 (545)
T PF11768_consen 234 PSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCED-------GSIILYDTTRGVTLLAKAEFIPT--- 303 (545)
T ss_pred ceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecC-------CeEEEEEcCCCeeeeeeecccce---
Confidence 4445667887777655543 2221111 111111245666676665 468899987774 222222222
Q ss_pred cccEEEE--CCEEEEEeCccCCCccCCceEEEeCCCCce
Q 017349 220 RYDSAVM--GSKMYVTEGWTWPFMFSPRGGVYDINKDTW 256 (373)
Q Consensus 220 ~~~~~~~--~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W 256 (373)
.+.. +|.++++|+.. ..+.+||..-+.-
T Consensus 304 ---~iaWHp~gai~~V~s~q------GelQ~FD~ALspi 333 (545)
T PF11768_consen 304 ---LIAWHPDGAIFVVGSEQ------GELQCFDMALSPI 333 (545)
T ss_pred ---EEEEcCCCcEEEEEcCC------ceEEEEEeecCcc
Confidence 2222 67788888765 5789999987754
No 256
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=30.28 E-value=4.6e+02 Score=24.51 Aligned_cols=64 Identities=14% Similarity=0.219 Sum_probs=35.0
Q ss_pred CCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEeCCCC
Q 017349 227 GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDD 297 (373)
Q Consensus 227 ~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~ 297 (373)
+|++...+.++ ...-.||..+++=-........+.+..+.-.+|.|...||.+ ..-.++|..++
T Consensus 272 sG~~L~TasfD------~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD-~~~RvWDlRtg 335 (459)
T KOG0272|consen 272 SGKFLGTASFD------STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLD-SLGRVWDLRTG 335 (459)
T ss_pred CCceeeecccc------cchhhcccccchhhHhhcccccccceeEecCCCceeeccCcc-chhheeecccC
Confidence 67777666655 334455665554222122233334444456789999999874 23345565554
No 257
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=30.15 E-value=3.8e+02 Score=23.57 Aligned_cols=165 Identities=9% Similarity=0.049 Sum_probs=83.1
Q ss_pred eeEEEeCCCCceeccCCCC--Cc---ceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeE-EeccCCccccccc
Q 017349 148 STIMYRATTNQWQLASPML--TP---RSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESDTW-TTAAKLRMGLARY 221 (373)
Q Consensus 148 ~~~~yd~~t~~W~~~~~~~--~~---r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~~~ 221 (373)
.+..++.....|..-.+.. .. +..-.+...++...+-++.+ ..+..+|..+.+= +.+..- .+.-.
T Consensus 39 ~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD-------~~lrlWDl~~g~~t~~f~GH--~~dVl 109 (315)
T KOG0279|consen 39 TIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD-------GTLRLWDLATGESTRRFVGH--TKDVL 109 (315)
T ss_pred EEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc-------ceEEEEEecCCcEEEEEEec--CCceE
Confidence 5667777666554422211 11 11111223356666666665 3577788877532 221110 00111
Q ss_pred cE-EEECCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEE-C-CeEEEEeeCCCcceEEEeCCCCc
Q 017349 222 DS-AVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVL-E-GKLFVISEHGDCPMKQYNPDDDT 298 (373)
Q Consensus 222 ~~-~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~-~~l~v~gg~~~~~~~~yd~~~~~ 298 (373)
+. +.-+++-.+.|..+ +.+..||...+.=-.+.......+....... + ...+++.+.....+.++|..+-+
T Consensus 110 sva~s~dn~qivSGSrD------kTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~ 183 (315)
T KOG0279|consen 110 SVAFSTDNRQIVSGSRD------KTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ 183 (315)
T ss_pred EEEecCCCceeecCCCc------ceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc
Confidence 12 22266666666665 6788888876654443332223333222222 2 25555554446788899988764
Q ss_pred eeeecCCCCCCcccccceEEEEeCCEEEEEeCC
Q 017349 299 WRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSG 331 (373)
Q Consensus 299 W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~ 331 (373)
-... .+.+........+..+|.|.+-||.
T Consensus 184 l~~~----~~gh~~~v~t~~vSpDGslcasGgk 212 (315)
T KOG0279|consen 184 LRTT----FIGHSGYVNTVTVSPDGSLCASGGK 212 (315)
T ss_pred hhhc----cccccccEEEEEECCCCCEEecCCC
Confidence 4432 2212112233446678999999884
No 258
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=29.50 E-value=4.5e+02 Score=24.11 Aligned_cols=91 Identities=13% Similarity=0.227 Sum_probs=48.2
Q ss_pred CEEEEEeCccCCCccCCceEEEeCCCCc--eeecccCccCCcceEEEEE-CCeEEEEeeCCCcceEEEeCCCCceeeecC
Q 017349 228 SKMYVTEGWTWPFMFSPRGGVYDINKDT--WNLMSDGMKEGWTGISIVL-EGKLFVISEHGDCPMKQYNPDDDTWRYVGG 304 (373)
Q Consensus 228 ~~lyv~gG~~~~~~~~~~i~~yd~~~~~--W~~~~~~~~~~~~~~~~~~-~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~ 304 (373)
+.+...|..+ ..|-.+|..++. .+.... ..+....+.. +|+ |++.-.+..++.+||.++.+-...-
T Consensus 304 ~~~l~s~SrD------ktIk~wdv~tg~cL~tL~gh---dnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~~~~cmk~~- 372 (406)
T KOG0295|consen 304 GQVLGSGSRD------KTIKIWDVSTGMCLFTLVGH---DNWVRGVAFSPGGK-YILSCADDKTLRVWDLKNLQCMKTL- 372 (406)
T ss_pred ccEEEeeccc------ceEEEEeccCCeEEEEEecc---cceeeeeEEcCCCe-EEEEEecCCcEEEEEeccceeeecc-
Confidence 3455455444 567778888774 222211 1122222222 344 4444444668999999887655433
Q ss_pred CCCCCcccccceEEEEeCCEEEEEeCCce
Q 017349 305 DKFPCEVMHRPFAVNGVEGKIYVVSSGLN 333 (373)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~i~GG~~~ 333 (373)
+.+ + .-..++-...+..||+.|+.+
T Consensus 373 -~ah-~--hfvt~lDfh~~~p~VvTGsVd 397 (406)
T KOG0295|consen 373 -EAH-E--HFVTSLDFHKTAPYVVTGSVD 397 (406)
T ss_pred -CCC-c--ceeEEEecCCCCceEEecccc
Confidence 222 0 222333455788899999743
No 259
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=27.31 E-value=4.5e+02 Score=23.46 Aligned_cols=71 Identities=11% Similarity=0.157 Sum_probs=38.4
Q ss_pred CCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEECCe---EEEEeeCCCcceEEEeCCCCceeeec
Q 017349 227 GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGK---LFVISEHGDCPMKQYNPDDDTWRYVG 303 (373)
Q Consensus 227 ~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~---l~v~gg~~~~~~~~yd~~~~~W~~~~ 303 (373)
+|.....|+.+ ..+-.||+++++=..++. . .+-...+..+++. +++.|.. ...+.-+|+.. =..+.
T Consensus 83 dgskVf~g~~D------k~~k~wDL~S~Q~~~v~~-H-d~pvkt~~wv~~~~~~cl~TGSW-DKTlKfWD~R~--~~pv~ 151 (347)
T KOG0647|consen 83 DGSKVFSGGCD------KQAKLWDLASGQVSQVAA-H-DAPVKTCHWVPGMNYQCLVTGSW-DKTLKFWDTRS--SNPVA 151 (347)
T ss_pred CCceEEeeccC------CceEEEEccCCCeeeeee-c-ccceeEEEEecCCCcceeEeccc-ccceeecccCC--CCeee
Confidence 55555566666 578899999997766653 1 1111122223333 3444443 55666667652 23444
Q ss_pred CCCCC
Q 017349 304 GDKFP 308 (373)
Q Consensus 304 ~~~~~ 308 (373)
.+.+|
T Consensus 152 t~~LP 156 (347)
T KOG0647|consen 152 TLQLP 156 (347)
T ss_pred eeecc
Confidence 44566
No 260
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=27.20 E-value=5.4e+02 Score=24.34 Aligned_cols=51 Identities=10% Similarity=0.073 Sum_probs=26.6
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceee-e-eeE-eCCeEEEEcCCC
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFF-A-SGN-VNGKIMAVGGTG 188 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~-~-~~~-~~~~iyv~GG~~ 188 (373)
+..-|+++|. ....+|+|...++.--.+- .+.+.. + ... .++..++-||.+
T Consensus 91 n~G~~l~ag~------i~g~lYlWelssG~LL~v~---~aHYQ~ITcL~fs~dgs~iiTgskD 144 (476)
T KOG0646|consen 91 NLGYFLLAGT------ISGNLYLWELSSGILLNVL---SAHYQSITCLKFSDDGSHIITGSKD 144 (476)
T ss_pred CCceEEEeec------ccCcEEEEEeccccHHHHH---HhhccceeEEEEeCCCcEEEecCCC
Confidence 4556666662 1337999999888532221 122211 1 122 256666667765
No 261
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=26.46 E-value=5.6e+02 Score=24.24 Aligned_cols=104 Identities=16% Similarity=0.234 Sum_probs=53.3
Q ss_pred eeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEeccCCcccccccc-EEEEC--CEEEEEeCccCCCccCCceEEEe
Q 017349 174 SGNVNGKIMAVGGTGANINETMTAVECYDPESDTWTTAAKLRMGLARYD-SAVMG--SKMYVTEGWTWPFMFSPRGGVYD 250 (373)
Q Consensus 174 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~-~~~~~--~~lyv~gG~~~~~~~~~~i~~yd 250 (373)
++..+++.++.||.+ +-+.++|.+|..=.. .++..|..-. .++.. ..+|..+-. ..+-+|+
T Consensus 209 avS~Dgkylatgg~d-------~~v~Iw~~~t~ehv~--~~~ghr~~V~~L~fr~gt~~lys~s~D-------rsvkvw~ 272 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRD-------RHVQIWDCDTLEHVK--VFKGHRGAVSSLAFRKGTSELYSASAD-------RSVKVWS 272 (479)
T ss_pred EEcCCCcEEEecCCC-------ceEEEecCcccchhh--cccccccceeeeeeecCccceeeeecC-------CceEEEe
Confidence 344689999999986 457788887764222 2333332222 22222 347765432 3555666
Q ss_pred CCCCceeecccCccCCcceEEEEECCeEEEEeeCCCcceEEEeC
Q 017349 251 INKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNP 294 (373)
Q Consensus 251 ~~~~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~ 294 (373)
.+.....+.--..+....+..+.-.++...+||. ..++..|++
T Consensus 273 ~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgr-DrT~rlwKi 315 (479)
T KOG0299|consen 273 IDQLSYVETLYGHQDGVLGIDALSRERCVTVGGR-DRTVRLWKI 315 (479)
T ss_pred hhHhHHHHHHhCCccceeeechhcccceEEeccc-cceeEEEec
Confidence 5554432211112222222224446777778876 345555555
No 262
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=26.34 E-value=8e+02 Score=26.00 Aligned_cols=141 Identities=17% Similarity=0.264 Sum_probs=81.8
Q ss_pred CEEEEEcCc-c-CCC-CCCcceeEEEeCCC-CceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCC
Q 017349 130 GKLFVLGGM-R-SDT-ETPMQSTIMYRATT-NQWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPES 205 (373)
Q Consensus 130 ~~i~v~GG~-~-~~~-~~~~~~~~~yd~~t-~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t 205 (373)
+..|++|-. . .+. +.....+.+|.... ++-+.+..+...-...+++.+++++.+.=| ..+..|+..+
T Consensus 787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In---------~~vrLye~t~ 857 (1096)
T KOG1897|consen 787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGIN---------QSVRLYEWTT 857 (1096)
T ss_pred ceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecC---------cEEEEEEccc
Confidence 456666532 1 111 12233555555544 677777777666667778888898776433 3478887766
Q ss_pred Ce-EEeccCCccccccccEEEECCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEECCeEEEEeeC
Q 017349 206 DT-WTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEH 284 (373)
Q Consensus 206 ~~-W~~~~~~~~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~ 284 (373)
++ -+.-.....+-..-..-+.++.|++.- -...-.+..|+...+...+++....+.+..++..+++..|+.+..
T Consensus 858 ~~eLr~e~~~~~~~~aL~l~v~gdeI~VgD-----lm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~ 932 (1096)
T KOG1897|consen 858 ERELRIECNISNPIIALDLQVKGDEIAVGD-----LMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAEN 932 (1096)
T ss_pred cceehhhhcccCCeEEEEEEecCcEEEEee-----ccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecc
Confidence 62 111112111111111223466676542 122346788999999999998766666766666677777776543
No 263
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.10 E-value=8.4e+02 Score=26.21 Aligned_cols=169 Identities=13% Similarity=0.188 Sum_probs=0.0
Q ss_pred eCCeEEEEcCCCCCCCCcCceEEEEeCCCCe-EEeccCCccccccccEEEE----CCEEEEEeCccCCCccCCceEEEeC
Q 017349 177 VNGKIMAVGGTGANINETMTAVECYDPESDT-WTTAAKLRMGLARYDSAVM----GSKMYVTEGWTWPFMFSPRGGVYDI 251 (373)
Q Consensus 177 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~~~~~~~----~~~lyv~gG~~~~~~~~~~i~~yd~ 251 (373)
+...|++.++.+ .+.+||-+.++ -.....-..+-.+-+...+ +..+.+.+..+ ..|-+|+.
T Consensus 1075 f~p~i~~ad~r~--------~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d------GvIRIwk~ 1140 (1387)
T KOG1517|consen 1075 FEPQIAAADDRE--------RIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSD------GVIRIWKD 1140 (1387)
T ss_pred CCceeEEcCCcc--------eEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccC------ceEEEecc
Q ss_pred CCCc---------eeecccCccCCcceEEEE----ECCeEEEEeeCCCcceEEEeCCCCceeeecCCCCCCcccccceEE
Q 017349 252 NKDT---------WNLMSDGMKEGWTGISIV----LEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAV 318 (373)
Q Consensus 252 ~~~~---------W~~~~~~~~~~~~~~~~~----~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~ 318 (373)
-... |+.+...++..+...+++ ..|+|++.|+.. .|.++|.++. ..+..+|..........++
T Consensus 1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r--~IRIWDa~~E--~~~~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVR--SIRIWDAHKE--QVVADIPYGSSTLVTALSA 1216 (1387)
T ss_pred cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCee--EEEEEecccc--eeEeecccCCCccceeecc
Q ss_pred EEeCCEEEEEeCCceeeeeEEEE---eecCCcccceEEecCCCCcCccee
Q 017349 319 NGVEGKIYVVSSGLNVAIGRVYE---EQNGGISAEWKVMTAPRAFKDLAP 365 (373)
Q Consensus 319 ~~~~~~l~i~GG~~~~~~~~~~~---~~~d~~~~~W~~~~~p~~~~~~~~ 365 (373)
-...|.+++.|=. ....++|+ ...|--...|+.-..+++.-.+..
T Consensus 1217 ~~~~gn~i~AGfa--DGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~sl 1264 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFA--DGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSL 1264 (1387)
T ss_pred cccCCceEEEeec--CCceEEeecccCCccccceeecccCCcccceeEEe
No 264
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=25.49 E-value=6.4e+02 Score=24.63 Aligned_cols=108 Identities=11% Similarity=0.060 Sum_probs=55.8
Q ss_pred CeEEEEcCCCCCCCCcCceEEEEeCCCCeEEecc--CCcccccccc-EEEECCEEEEEeCccCCCccCCceEEEeCCCCc
Q 017349 179 GKIMAVGGTGANINETMTAVECYDPESDTWTTAA--KLRMGLARYD-SAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDT 255 (373)
Q Consensus 179 ~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~~~~~~-~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~ 255 (373)
+.|+.+.-.-...+...-+.-+|+...++-+.+. .+|.+-.-.. +...+....++|-.+ ..+..||..++.
T Consensus 219 ~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~D------gSiiLyD~~~~~ 292 (545)
T PF11768_consen 219 YQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCED------GSIILYDTTRGV 292 (545)
T ss_pred cEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecC------CeEEEEEcCCCe
Confidence 3455553322112334455667887777666554 2222211111 111244566666555 579999998775
Q ss_pred eeecccCccCCcceEEEE--ECCeEEEEeeCCCcceEEEeCCCC
Q 017349 256 WNLMSDGMKEGWTGISIV--LEGKLFVISEHGDCPMKQYNPDDD 297 (373)
Q Consensus 256 W~~~~~~~~~~~~~~~~~--~~~~l~v~gg~~~~~~~~yd~~~~ 297 (373)
=+.......+ ..+. -+|.++++|+. .+.+..||..-+
T Consensus 293 t~~~ka~~~P----~~iaWHp~gai~~V~s~-qGelQ~FD~ALs 331 (545)
T PF11768_consen 293 TLLAKAEFIP----TLIAWHPDGAIFVVGSE-QGELQCFDMALS 331 (545)
T ss_pred eeeeeecccc----eEEEEcCCCcEEEEEcC-CceEEEEEeecC
Confidence 3332221111 1122 27778888775 567788877544
No 265
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=25.18 E-value=5e+02 Score=23.28 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=75.3
Q ss_pred CCceeEEEeeCCCCCeeeCCCCCCCCCCCCCceEEEEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCcee-ccCCCCC
Q 017349 89 TARIQWQALDPRSGRWFVLPPMPCPKAVCPQAFACTSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQ-LASPMLT 167 (373)
Q Consensus 89 ~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~-~~~~~~~ 167 (373)
+..+....||.+|-+...-.. |... ......++-....+.+|+.|..++ .+-.||-.+++-. .+.....
T Consensus 235 TdHp~~rlYdv~T~Qcfvsan-Pd~q--ht~ai~~V~Ys~t~~lYvTaSkDG-------~IklwDGVS~rCv~t~~~AH~ 304 (430)
T KOG0640|consen 235 TDHPTLRLYDVNTYQCFVSAN-PDDQ--HTGAITQVRYSSTGSLYVTASKDG-------AIKLWDGVSNRCVRTIGNAHG 304 (430)
T ss_pred cCCCceeEEeccceeEeeecC-cccc--cccceeEEEecCCccEEEEeccCC-------cEEeeccccHHHHHHHHhhcC
Confidence 345557789998877655433 3111 112233333445789999987733 5788888887643 2333222
Q ss_pred cceeeeeeE-eCCeEEEEcCCCCCCCCcCceEEEEeCCCCeEEec--cCCccccccc--cEEEECCEEEEEeCccCCCcc
Q 017349 168 PRSFFASGN-VNGKIMAVGGTGANINETMTAVECYDPESDTWTTA--AKLRMGLARY--DSAVMGSKMYVTEGWTWPFMF 242 (373)
Q Consensus 168 ~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~--~~~~~~~~~~--~~~~~~~~lyv~gG~~~~~~~ 242 (373)
.-.-.++.. -+++..+-.|.+ +.+..+.+.|+.--.. ..-...|..+ .+++-+..=||+- +.+.
T Consensus 305 gsevcSa~Ftkn~kyiLsSG~D-------S~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~----pDEa 373 (430)
T KOG0640|consen 305 GSEVCSAVFTKNGKYILSSGKD-------STVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLF----PDEA 373 (430)
T ss_pred CceeeeEEEccCCeEEeecCCc-------ceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEc----cccc
Confidence 222223333 256666667775 3355555566643221 1112223222 2333344455553 2344
Q ss_pred CCceEEEeCCCCc
Q 017349 243 SPRGGVYDINKDT 255 (373)
Q Consensus 243 ~~~i~~yd~~~~~ 255 (373)
.+++..+|..+..
T Consensus 374 s~slcsWdaRtad 386 (430)
T KOG0640|consen 374 SNSLCSWDARTAD 386 (430)
T ss_pred cCceeeccccchh
Confidence 5677777776543
No 266
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=24.61 E-value=6.8e+02 Score=24.63 Aligned_cols=148 Identities=13% Similarity=0.183 Sum_probs=69.2
Q ss_pred EEEEeCCCCeEEeccCCcc---cccccc----EEEECCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceE
Q 017349 198 VECYDPESDTWTTAAKLRM---GLARYD----SAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGI 270 (373)
Q Consensus 198 ~~~yd~~t~~W~~~~~~~~---~~~~~~----~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~ 270 (373)
+..-.|....|+.+++.+. --.+.. ++..+|+++.--| |-+.++.-+.|..+..|..... ..
T Consensus 210 vs~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~G----------VsRqNp~GdsWkdI~tP~~a~~-~v 278 (705)
T KOG3669|consen 210 VSVDRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREG----------VSRQNPEGDSWKDIVTPRQALE-PV 278 (705)
T ss_pred ccCCCCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEec----------ccccCCCCchhhhccCcccccc-eE
Confidence 3345678889999876541 111111 2334777665433 4567888889998765332211 11
Q ss_pred EEEEC-CeEEEEeeCCCcceEEEe----CCCC---ceeeecCCCCCCcccccceEEEEeCCEEEEEeCCceeeeeEEEE-
Q 017349 271 SIVLE-GKLFVISEHGDCPMKQYN----PDDD---TWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYE- 341 (373)
Q Consensus 271 ~~~~~-~~l~v~gg~~~~~~~~yd----~~~~---~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~- 341 (373)
++.++ ..|+.+......-+.+-+ |+.. .|......+.. ......+-.+..+++++.++-.. .+.....
T Consensus 279 ~iSvGt~t~Waldndg~lwfrrgii~~kpeg~h~~e~~~s~~~~v~-tdq~isf~SV~~ndqVfaisa~~--~i~~R~GV 355 (705)
T KOG3669|consen 279 CISVGTQTLWALDNDGNLWFRRGIISKKPEGDHDHEWQVSITDYVV-TDQCISFQSVIHNDQVFAISAQA--KIEVREGV 355 (705)
T ss_pred EEEeccceEEEEecCCcEEEEecccccCcccccccccccccccceE-EecceeeEEEEecceEEEEeccc--ceeeeccc
Confidence 22221 223332221100000111 1111 12221111111 11133344577889999998764 1111111
Q ss_pred eecCCcccceEEecCCCC
Q 017349 342 EQNGGISAEWKVMTAPRA 359 (373)
Q Consensus 342 ~~~d~~~~~W~~~~~p~~ 359 (373)
..-++....|+.+.+++.
T Consensus 356 t~~~P~Gk~w~liqc~~~ 373 (705)
T KOG3669|consen 356 TDKLPMGKWWQLIQCQPS 373 (705)
T ss_pred cccCccccceeeeecCce
Confidence 236677788888877643
No 267
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=23.81 E-value=5.4e+02 Score=23.12 Aligned_cols=176 Identities=15% Similarity=0.168 Sum_probs=75.3
Q ss_pred CCEEEEEcCccCC---CCCCcceeEEEeC-CCCceeccCCC--------CCcceeeeeeEeCCeEEEEcCCCCC-CCCcC
Q 017349 129 QGKLFVLGGMRSD---TETPMQSTIMYRA-TTNQWQLASPM--------LTPRSFFASGNVNGKIMAVGGTGAN-INETM 195 (373)
Q Consensus 129 ~~~i~v~GG~~~~---~~~~~~~~~~yd~-~t~~W~~~~~~--------~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~ 195 (373)
++.|+.+...... ..........+.. ...+|+..... ......++.++-+++||++-|.... .....
T Consensus 8 gGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~~~~~~~ 87 (310)
T PF13859_consen 8 GGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSRSAGADD 87 (310)
T ss_dssp TTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS--SSTT
T ss_pred CCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEeccccccc
Confidence 7888877543211 1112222333443 34478754211 1112346667779999998765311 12223
Q ss_pred ceEEEEeC--CCCeEEeccCCcccccc---------ccEEEE-CCEEEE-EeCccCCCccCCceEEEeCC-CCceeeccc
Q 017349 196 TAVECYDP--ESDTWTTAAKLRMGLAR---------YDSAVM-GSKMYV-TEGWTWPFMFSPRGGVYDIN-KDTWNLMSD 261 (373)
Q Consensus 196 ~~~~~yd~--~t~~W~~~~~~~~~~~~---------~~~~~~-~~~lyv-~gG~~~~~~~~~~i~~yd~~-~~~W~~~~~ 261 (373)
..+..+.. ...+|.....++..... -+.+.+ +|.|.+ +-+..........+.+|-.. ...|+.-..
T Consensus 88 ~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W~lskg 167 (310)
T PF13859_consen 88 WGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTWKLSKG 167 (310)
T ss_dssp EEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-EE-S-
T ss_pred cceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEECCCccceEeccc
Confidence 34444432 22369876555432211 112233 444332 22222122212466778776 557987544
Q ss_pred CccCCcceEE-EEE-CCeEEEEeeCCCcceEEE--eCCCCceee-ecC
Q 017349 262 GMKEGWTGIS-IVL-EGKLFVISEHGDCPMKQY--NPDDDTWRY-VGG 304 (373)
Q Consensus 262 ~~~~~~~~~~-~~~-~~~l~v~gg~~~~~~~~y--d~~~~~W~~-~~~ 304 (373)
..+.++.... +.. +|+|.++...+...-.+| .-.-.+|++ ++.
T Consensus 168 ~s~~gC~~psv~EWe~gkLlM~~~c~~g~rrVYeS~DmG~tWtea~gt 215 (310)
T PF13859_consen 168 MSPAGCSDPSVVEWEDGKLLMMTACDDGRRRVYESGDMGTTWTEALGT 215 (310)
T ss_dssp ---TT-EEEEEEEE-TTEEEEEEE-TTS---EEEESSTTSS-EE-TTT
T ss_pred cCCCCcceEEEEeccCCeeEEEEecccceEEEEEEcccceehhhccCc
Confidence 3345555554 566 789999976654433444 223468998 544
No 268
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=23.42 E-value=7.7e+02 Score=24.80 Aligned_cols=152 Identities=13% Similarity=0.069 Sum_probs=68.7
Q ss_pred cceeEEEeCCCC--ceeccCCCCCcceeeeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCC--eEEeccCCccccccc
Q 017349 146 MQSTIMYRATTN--QWQLASPMLTPRSFFASGNVNGKIMAVGGTGANINETMTAVECYDPESD--TWTTAAKLRMGLARY 221 (373)
Q Consensus 146 ~~~~~~yd~~t~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~~~~~ 221 (373)
...++.....+. +=+.+-.-+.++...++......-|++=.. +....++++.++.+.. .++.+.+-+.... .
T Consensus 199 p~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~---~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~e-Y 274 (682)
T COG1770 199 PDKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISL---GSHITSEVRLLDADDPEAEPKVVLPRENGVE-Y 274 (682)
T ss_pred cceEEEEecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEc---CCCcceeEEEEecCCCCCceEEEEEcCCCcE-E
Confidence 345665555552 222233334445554444433222222222 1223456777766543 3444432222111 1
Q ss_pred cEEEECCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEEEEECCeEEEEeeCC-CcceEEEeCCCCcee
Q 017349 222 DSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHG-DCPMKQYNPDDDTWR 300 (373)
Q Consensus 222 ~~~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~v~gg~~-~~~~~~yd~~~~~W~ 300 (373)
.+.-.++.+|+..-..+.....-..-+ ++....|+.+-...+..+....-.+++.|.+.-... ...+.+-|.+++.=.
T Consensus 275 ~~eh~~d~f~i~sN~~gknf~l~~ap~-~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~ 353 (682)
T COG1770 275 SVEHGGDRFYILSNADGKNFKLVRAPV-SADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEER 353 (682)
T ss_pred eeeecCcEEEEEecCCCcceEEEEccC-CCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCcee
Confidence 222335667766543322111112223 667788987754333333333345667666654332 346666666655444
Q ss_pred ee
Q 017349 301 YV 302 (373)
Q Consensus 301 ~~ 302 (373)
.+
T Consensus 354 ~i 355 (682)
T COG1770 354 GI 355 (682)
T ss_pred eE
Confidence 43
No 269
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=23.26 E-value=6.1e+02 Score=23.54 Aligned_cols=90 Identities=10% Similarity=0.035 Sum_probs=47.6
Q ss_pred CCEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEE--------EEECCeEEEEeeCCCcceEEEeCCCCc
Q 017349 227 GSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGIS--------IVLEGKLFVISEHGDCPMKQYNPDDDT 298 (373)
Q Consensus 227 ~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~--------~~~~~~l~v~gg~~~~~~~~yd~~~~~ 298 (373)
+|+....|..+ +.|..||+++++= +..+++...-... .+-..+ ++..+...+++.++|...++
T Consensus 168 Dgk~iASG~~d------g~I~lwdpktg~~--~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~ 238 (480)
T KOG0271|consen 168 DGKKIASGSKD------GSIRLWDPKTGQQ--IGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGT 238 (480)
T ss_pred CcchhhccccC------CeEEEecCCCCCc--ccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCce
Confidence 77777666655 6889999988741 1111111110000 011122 33333346688888887665
Q ss_pred eeeecCCCCCCcccccceEEEEeCCEEEEEeCC
Q 017349 299 WRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSG 331 (373)
Q Consensus 299 W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG~ 331 (373)
-...-. .. .....++..+|.=||..|.
T Consensus 239 ~~~~ls-gH-----T~~VTCvrwGG~gliySgS 265 (480)
T KOG0271|consen 239 CVRTLS-GH-----TASVTCVRWGGEGLIYSGS 265 (480)
T ss_pred EEEEec-cC-----ccceEEEEEcCCceEEecC
Confidence 444321 11 2346667788777777774
No 270
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=22.79 E-value=5.9e+02 Score=23.20 Aligned_cols=162 Identities=12% Similarity=0.090 Sum_probs=81.2
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCccee--eeeeEeCCeEEEEcCCCCCCCCcCceEEEEeCCCC
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSF--FASGNVNGKIMAVGGTGANINETMTAVECYDPESD 206 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~ 206 (373)
++.+|++..-.. ..--..+.+|+..++-+.+.....+-.. +.++.-++++.+..-+. ...+-+|-.+++
T Consensus 51 ~~~LY~v~~~~~---~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~------~g~v~v~p~~~d 121 (346)
T COG2706 51 QRHLYVVNEPGE---EGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH------SGSVSVYPLQAD 121 (346)
T ss_pred CCEEEEEEecCC---cCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc------CceEEEEEcccC
Confidence 457888754321 2333667888888888777654433332 22222234333332222 244666655543
Q ss_pred e--EEec------cCCccccc----cccE-EEECCEEEEEeCccCCCccCCceEEEeCCCCceeeccc-Cc---cCCcce
Q 017349 207 T--WTTA------AKLRMGLA----RYDS-AVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSD-GM---KEGWTG 269 (373)
Q Consensus 207 ~--W~~~------~~~~~~~~----~~~~-~~~~~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~-~~---~~~~~~ 269 (373)
- |..+ ..-|.+|. .|.+ ..-++++.++--. -...+..|+.+.+.-+.... .. ..+|+-
T Consensus 122 G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL-----G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 122 GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL-----GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec-----CCceEEEEEcccCccccccccccCCCCCcceE
Confidence 1 2221 22233341 1222 2235654444322 12589999999887765543 11 122221
Q ss_pred EEEEECCeEEEEeeCC-CcceEEEeCCCCceeeecC
Q 017349 270 ISIVLEGKLFVISEHG-DCPMKQYNPDDDTWRYVGG 304 (373)
Q Consensus 270 ~~~~~~~~l~v~gg~~-~~~~~~yd~~~~~W~~~~~ 304 (373)
..---+.-.|++..-+ .-.++.||...++.++++.
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~ 232 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT 232 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee
Confidence 1111234478887643 3456677777788888766
No 271
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.56 E-value=5e+02 Score=22.37 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=24.4
Q ss_pred EEEECCeEEEEeeCCCcceEEEeCCCCceeeecCCCCC
Q 017349 271 SIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFP 308 (373)
Q Consensus 271 ~~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~ 308 (373)
++--.|+|||.-= +...+.++|+.+++--.--.+|.+
T Consensus 218 ~ID~eG~L~Va~~-ng~~V~~~dp~tGK~L~eiklPt~ 254 (310)
T KOG4499|consen 218 TIDTEGNLYVATF-NGGTVQKVDPTTGKILLEIKLPTP 254 (310)
T ss_pred eEccCCcEEEEEe-cCcEEEEECCCCCcEEEEEEcCCC
Confidence 3444889998632 244899999999865543335555
No 272
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=22.51 E-value=5.4e+02 Score=22.70 Aligned_cols=195 Identities=16% Similarity=0.211 Sum_probs=90.7
Q ss_pred cCCEEEEEc-Ccc-CCCC---CCcceeEEEeCCCCceeccCCCC----Ccceeeee-eEeC-------CeEEEEcCCCCC
Q 017349 128 RQGKLFVLG-GMR-SDTE---TPMQSTIMYRATTNQWQLASPML----TPRSFFAS-GNVN-------GKIMAVGGTGAN 190 (373)
Q Consensus 128 ~~~~i~v~G-G~~-~~~~---~~~~~~~~yd~~t~~W~~~~~~~----~~r~~~~~-~~~~-------~~iyv~GG~~~~ 190 (373)
..+.|+++- |.. .... .....+.+||+.+++-.+.-.+| .+.....- ++.. +.+|+.--.
T Consensus 10 ~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~--- 86 (287)
T PF03022_consen 10 ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSG--- 86 (287)
T ss_dssp TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETT---
T ss_pred CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCC---
Confidence 378999883 331 1111 33568999999999754332222 22333222 2221 367775322
Q ss_pred CCCcCceEEEEeCCCCe-EEeccCCccccccccEEEECCEEEEEe-Cc----cCCCccCCceEEEeCCCCc-eeeccc--
Q 017349 191 INETMTAVECYDPESDT-WTTAAKLRMGLARYDSAVMGSKMYVTE-GW----TWPFMFSPRGGVYDINKDT-WNLMSD-- 261 (373)
Q Consensus 191 ~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~~~~~~~~~~lyv~g-G~----~~~~~~~~~i~~yd~~~~~-W~~~~~-- 261 (373)
...+.+||..+++ |+.......+.........+|..+-.. |. ..+........-|.+-+.. +-.++.
T Consensus 87 ----~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~ 162 (287)
T PF03022_consen 87 ----GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSV 162 (287)
T ss_dssp ----TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHH
T ss_pred ----cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHH
Confidence 2379999999975 776654333332333444555544321 11 0010111134445543332 222211
Q ss_pred -----------------CccC---CcceEEEEECCeEEEEeeCCCcceEEEeCCC----CceeeecCCCCCCcccccceE
Q 017349 262 -----------------GMKE---GWTGISIVLEGKLFVISEHGDCPMKQYNPDD----DTWRYVGGDKFPCEVMHRPFA 317 (373)
Q Consensus 262 -----------------~~~~---~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~----~~W~~~~~~~~~~~~~~~~~~ 317 (373)
.+.. ...+.+.--+|.||+.- ...+.|.++|+.+ +..+.+..-+. ......+
T Consensus 163 L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~-~~~~aI~~w~~~~~~~~~~~~~l~~d~~---~l~~pd~ 238 (287)
T PF03022_consen 163 LRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTD-VEQNAIGCWDPDGPYTPENFEILAQDPR---TLQWPDG 238 (287)
T ss_dssp HCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEE-CCCTEEEEEETTTSB-GCCEEEEEE-CC----GSSEEE
T ss_pred hhCccccccccccccceeccccCCCCceEEECCCCcEEEec-CCCCeEEEEeCCCCcCccchheeEEcCc---eeeccce
Confidence 0001 11112222356666543 3477999999987 45666653221 1234455
Q ss_pred EEEeC---CEEEEEeCCce
Q 017349 318 VNGVE---GKIYVVSSGLN 333 (373)
Q Consensus 318 ~~~~~---~~l~i~GG~~~ 333 (373)
+.... +.||+.-....
T Consensus 239 ~~i~~~~~g~L~v~snrl~ 257 (287)
T PF03022_consen 239 LKIDPEGDGYLWVLSNRLQ 257 (287)
T ss_dssp EEE-T--TS-EEEEE-S--
T ss_pred eeeccccCceEEEEECcch
Confidence 55555 88999886543
No 273
>KOG1565 consensus Gelatinase A and related matrix metalloproteases [Posttranslational modification, protein turnover, chaperones; Extracellular structures]
Probab=22.33 E-value=6.1e+02 Score=24.39 Aligned_cols=97 Identities=19% Similarity=0.120 Sum_probs=51.4
Q ss_pred eCCeEEEEcCCCCCCCCcCceEEEEeCCCCeE---EeccC---CccccccccEEEE---CCEEEEEeCccCCCccCCceE
Q 017349 177 VNGKIMAVGGTGANINETMTAVECYDPESDTW---TTAAK---LRMGLARYDSAVM---GSKMYVTEGWTWPFMFSPRGG 247 (373)
Q Consensus 177 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~W---~~~~~---~~~~~~~~~~~~~---~~~lyv~gG~~~~~~~~~~i~ 247 (373)
..+++|++.|.. .++|.-.+... +.+.. .+.... ..++.. .+++|++-|. ..+
T Consensus 343 ~~~~~~ffkg~~---------~w~~~~~~~~~gypr~l~~~~~~~~~~~-idaa~~~~~~~kt~ff~g~--------~~w 404 (469)
T KOG1565|consen 343 WDGKIYFFKGAQ---------FWSYAGYTLVPGYPKKLYRSVGFPPRGR-IDAARFWPANGKTYFFSGR--------RYW 404 (469)
T ss_pred ccCcEEEecCCe---------eEEEecccccCCCCcchhhccccCCCCc-eeeeEeccCCCceEEEecc--------eee
Confidence 678888887763 55555444332 22222 111111 333333 5788988874 567
Q ss_pred EEeCCCCceeecccCcc----CCcceEEEEECCeEEEEeeCCCcceEEEeCC
Q 017349 248 VYDINKDTWNLMSDGMK----EGWTGISIVLEGKLFVISEHGDCPMKQYNPD 295 (373)
Q Consensus 248 ~yd~~~~~W~~~~~~~~----~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~ 295 (373)
.||...+. .....+.. .+...+...-++.+|.+-|. ..|.||..
T Consensus 405 r~d~~~~~-~d~~~p~~~~~~~gi~~a~~~~~~~~Yff~g~---~y~~~d~~ 452 (469)
T KOG1565|consen 405 RYDEKSRA-MDWGYPKWIHKFPGIGDASFSNGGSVYFFSGP---KYYRYDDR 452 (469)
T ss_pred eehhhhcc-cccCCCcchhhccCccchhhhcCceEEEEeCC---eeEeeCch
Confidence 88877665 22111100 11111122334478888776 78899876
No 274
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=22.31 E-value=5.5e+02 Score=22.68 Aligned_cols=176 Identities=7% Similarity=0.087 Sum_probs=86.0
Q ss_pred EEeccCCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeee-EeCCeEEEEcCCCCCCCCcCceEEEEe
Q 017349 124 TSLPRQGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASG-NVNGKIMAVGGTGANINETMTAVECYD 202 (373)
Q Consensus 124 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd 202 (373)
+++..++...+.++.++ .+..+|..+++=++.--- ..+.-.+++ .-+++-.+-|..+ +.+-.||
T Consensus 69 v~~s~dg~~alS~swD~-------~lrlWDl~~g~~t~~f~G-H~~dVlsva~s~dn~qivSGSrD-------kTiklwn 133 (315)
T KOG0279|consen 69 VVLSSDGNFALSASWDG-------TLRLWDLATGESTRRFVG-HTKDVLSVAFSTDNRQIVSGSRD-------KTIKLWN 133 (315)
T ss_pred eEEccCCceEEeccccc-------eEEEEEecCCcEEEEEEe-cCCceEEEEecCCCceeecCCCc-------ceeeeee
Confidence 34455777788777632 678889888632221111 111111222 2245555555554 3455666
Q ss_pred CCCCeEEecc-CCccccccccEEEE--C--CEEEEEeCccCCCccCCceEEEeCCCCceeecccCccCCcceEE-EEECC
Q 017349 203 PESDTWTTAA-KLRMGLARYDSAVM--G--SKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGIS-IVLEG 276 (373)
Q Consensus 203 ~~t~~W~~~~-~~~~~~~~~~~~~~--~--~~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~ 276 (373)
...+.=-++. .+. +.--+.+.+ + +-+++-+|.+ ..+-++|+.+.+=...-. -..+..... +.-+|
T Consensus 134 t~g~ck~t~~~~~~--~~WVscvrfsP~~~~p~Ivs~s~D------ktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDG 204 (315)
T KOG0279|consen 134 TLGVCKYTIHEDSH--REWVSCVRFSPNESNPIIVSASWD------KTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDG 204 (315)
T ss_pred ecccEEEEEecCCC--cCcEEEEEEcCCCCCcEEEEccCC------ceEEEEccCCcchhhccc-cccccEEEEEECCCC
Confidence 5554322221 221 111112211 2 3455556665 567888887766433221 112222222 45689
Q ss_pred eEEEEeeCCCcceEEEeCCCCceeeecCCCCCCcccccceEEEEeCCEEEEEeC
Q 017349 277 KLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSS 330 (373)
Q Consensus 277 ~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~GG 330 (373)
.+..-||. ...++.+|+..++= +..+..- ..-++++..-++..+.-+
T Consensus 205 slcasGgk-dg~~~LwdL~~~k~--lysl~a~----~~v~sl~fspnrywL~~a 251 (315)
T KOG0279|consen 205 SLCASGGK-DGEAMLWDLNEGKN--LYSLEAF----DIVNSLCFSPNRYWLCAA 251 (315)
T ss_pred CEEecCCC-CceEEEEEccCCce--eEeccCC----CeEeeEEecCCceeEeec
Confidence 99998886 56777777765432 2221211 233455555555555444
No 275
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=21.45 E-value=5.8e+02 Score=22.63 Aligned_cols=193 Identities=11% Similarity=0.099 Sum_probs=90.8
Q ss_pred CCEEEEEcCccCCCCCCcceeEEEeCCCCceeccCCCCCcceeeeeeE-eCCeEEEEcCCCCCCCCcCceEEEEeCCCCe
Q 017349 129 QGKLFVLGGMRSDTETPMQSTIMYRATTNQWQLASPMLTPRSFFASGN-VNGKIMAVGGTGANINETMTAVECYDPESDT 207 (373)
Q Consensus 129 ~~~i~v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~t~~ 207 (373)
+.+.+++|+.. .+..-|-.-++|.+.-... .|+.+..+. .+.+=++.|-- ..+..=+-.-.+
T Consensus 54 g~~gwlVg~rg--------tiletdd~g~tw~qal~~~-gr~~f~sv~f~~~egw~vGe~--------sqll~T~DgGqs 116 (339)
T COG4447 54 GSHGWLVGGRG--------TILETDDGGITWAQALDFL-GRHAFHSVSFLGMEGWIVGEP--------SQLLHTTDGGQS 116 (339)
T ss_pred CcceEEEcCcc--------eEEEecCCcccchhhhchh-hhhheeeeeeecccccccCCc--------ceEEEecCCCcc
Confidence 78999998852 4667777788998865433 255444443 34434444322 234444445567
Q ss_pred EEecc-CCccccccccEEEECC-EEEEEeCccCCCccCCceEEEeCCCCceeecccCccC--CcceEEEEECCeEEEEee
Q 017349 208 WTTAA-KLRMGLARYDSAVMGS-KMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKE--GWTGISIVLEGKLFVISE 283 (373)
Q Consensus 208 W~~~~-~~~~~~~~~~~~~~~~-~lyv~gG~~~~~~~~~~i~~yd~~~~~W~~~~~~~~~--~~~~~~~~~~~~l~v~gg 283 (373)
|.+++ +...+-.-.+....+. +=|++|-+. .|+.=+-.-+.|+.+..-... .....+.+.+|+...+|-
T Consensus 117 WARi~~~e~~eg~~~sI~f~d~q~g~m~gd~G-------ail~T~DgGk~Wk~l~e~~v~~~~~n~ia~s~dng~vaVg~ 189 (339)
T COG4447 117 WARIPLSEKLEGFPDSITFLDDQRGEMLGDQG-------AILKTTDGGKNWKALVEKAVGLAVPNEIARSADNGYVAVGA 189 (339)
T ss_pred hhhchhhcCCCCCcceeEEecchhhhhhcccc-------eEEEecCCcccHhHhcccccchhhhhhhhhhccCCeEEEec
Confidence 98875 2222222234444443 334444321 333334445579876541111 011112345666666664
Q ss_pred CCCcceEEEeCCCCceeeecCCCCCCcccccceEE-EEeCC--EEEEEeCCceeeeeEEEEeecCCcccceEEecCCC
Q 017349 284 HGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAV-NGVEG--KIYVVSSGLNVAIGRVYEEQNGGISAEWKVMTAPR 358 (373)
Q Consensus 284 ~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~--~l~i~GG~~~~~~~~~~~~~~d~~~~~W~~~~~p~ 358 (373)
.+ .-+...+.-...|..-. + ...+..-.+ ...++ -+++.||...-+ . .+...++|+..+.|.
T Consensus 190 rG-s~f~T~~aGqt~~~~~g--~---~s~~~letmg~adag~~g~la~g~qg~~f-----~--~~~~gD~wsd~~~~~ 254 (339)
T COG4447 190 RG-SFFSTWGAGQTVWLPHG--R---NSSRRLETMGLADAGSKGLLARGGQGDQF-----S--WVCGGDEWSDQGEPV 254 (339)
T ss_pred Cc-ceEecCCCCccEEeccC--C---CccchhcccccccCCccceEEEcccccee-----e--cCCCcccccccccch
Confidence 43 22223344333333222 1 111111111 12223 578888853221 1 345556777665543
No 276
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=21.28 E-value=2.2e+02 Score=18.52 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=20.9
Q ss_pred ECCeEEEEeeCCCcceEEEeCCCCceeeec
Q 017349 274 LEGKLFVISEHGDCPMKQYNPDDDTWRYVG 303 (373)
Q Consensus 274 ~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~ 303 (373)
-++.+=+.|..+.-.|++||+++++-+.++
T Consensus 28 ~~N~Fav~~e~~~iKIfkyd~~tNei~L~K 57 (63)
T PF14157_consen 28 EHNHFAVVDEDGQIKIFKYDEDTNEITLKK 57 (63)
T ss_dssp STTEEEEE-ETTEEEEEEEETTTTEEEEEE
T ss_pred cCCEEEEEecCCeEEEEEeCCCCCeEEEEE
Confidence 355555665555678999999999877654
No 277
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=20.39 E-value=8.9e+02 Score=24.39 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=25.4
Q ss_pred EEECCeEEEEeeCCCcceEEEeCCCCceeeecCCCCCCcccccceEEEEe-CCEEEEEeC
Q 017349 272 IVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGV-EGKIYVVSS 330 (373)
Q Consensus 272 ~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~GG 330 (373)
...++.+++-.|. ...+.+|+.+ +.++...+|. ....++..+ +|.|+ +||
T Consensus 227 ~~~~~~~Ivs~gE-DrtlriW~~~----e~~q~I~lPt---tsiWsa~~L~NgDIv-vg~ 277 (745)
T KOG0301|consen 227 MALSDGLIVSTGE-DRTLRIWKKD----ECVQVITLPT---TSIWSAKVLLNGDIV-VGG 277 (745)
T ss_pred ecCCCCeEEEecC-CceEEEeecC----ceEEEEecCc---cceEEEEEeeCCCEE-Eec
Confidence 3556777776665 3456666554 3333334552 234455444 55554 444
Done!