BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017355
         (373 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Y8D|A Chain A, Structure Of Dbl6 Epsilon Domain From Var2csa Strain Fcr3
          Length = 306

 Score = 32.0 bits (71), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 13/127 (10%)

Query: 206 NGGFETGPHTFKNY--STGVLLPPKQEDLISPL-PGWIIESLKPVKYIDKKHFFVPSGFS 262
           NG F T     K++  S GVL+PP++++L   + P  I E  K  K    K F   S F+
Sbjct: 20  NGNFVTDNFVKKSWEISNGVLIPPRRKNLFLYIDPSKICEYKKDPKLF--KDFIYWSAFT 77

Query: 263 AIE-LVAGRESAIAQIIRTIPQKSYELTFIIGDAKNGCHGSMVVEAFAADKTIKVPYNSV 321
            +E L      A A+++  +     ++  II        G  ++E  ++DK  K+  ++ 
Sbjct: 78  EVERLKKAYGGARAKVVHAMKYSFTDIGSII-------KGDDMMEKNSSDKIGKILGDTD 130

Query: 322 GKGGSKK 328
           G+   +K
Sbjct: 131 GQNEKRK 137


>pdb|1YB0|A Chain A, Structure Of Plyl
 pdb|1YB0|B Chain B, Structure Of Plyl
 pdb|1YB0|C Chain C, Structure Of Plyl
          Length = 159

 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 135 PGQSGDLSVQTLFSSNGGDTYAWAFNATSDVVK 167
           PG    +SV+  +S +GGD Y  A N   DVV+
Sbjct: 81  PGNRESISVEICYSKSGGDRYYKAENNAVDVVR 113


>pdb|2AR3|A Chain A, E90a Mutant Structure Of Plyl
 pdb|2AR3|B Chain B, E90a Mutant Structure Of Plyl
 pdb|2AR3|C Chain C, E90a Mutant Structure Of Plyl
          Length = 160

 Score = 29.3 bits (64), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 135 PGQSGDLSVQTLFSSNGGDTYAWAFNATSDVVK 167
           PG    +SV   +S +GGD Y  A N   DVV+
Sbjct: 81  PGNRESISVAICYSKSGGDRYYKAENNAVDVVR 113


>pdb|3ZUQ|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
           Type B-Derivative, Lc-B-Gs-Hn-B
          Length = 906

 Score = 28.9 bits (63), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 20/165 (12%)

Query: 180 TCGPLLDAVAIKEILPLKYTKGNLVKNGGFETGPHTFKNYSTGVLLPPKQEDLISPLPGW 239
           T   + D   I   + L    GN    G FE   + F+     +LL    E LI  +  +
Sbjct: 645 TMDKIADISLIVPYIGLALNVGNETAKGNFE---NAFEIAGASILLEFIPELLIPVVGAF 701

Query: 240 IIESLKPVKYIDKKHFFVPSGFSAIELVAGRES-----AIAQIIRTIPQKSYELTFIIGD 294
           ++ES     YID K+  + +  +A+     + S      +AQ + T+  + Y +      
Sbjct: 702 LLES-----YIDNKNKIIKTIDNALTKRNEKWSDMYGLIVAQWLSTVNTQFYTI------ 750

Query: 295 AKNGCHGSMVVEAFAADKTIKVPYNSVGKGGSKKASLKFQALTSR 339
            K G + ++  +A A ++ IK  YN   +      ++ F  + S+
Sbjct: 751 -KEGMYKALNYQAQALEEIIKYRYNIYSEKEKSNINIDFNDINSK 794


>pdb|2XHL|B Chain B, Structure Of A Functional Derivative Of Clostridium
           Botulinum Neurotoxin Type B
          Length = 433

 Score = 28.9 bits (63), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 24/164 (14%)

Query: 185 LDAVA-IKEILP---LKYTKGNLVKNGGFETGPHTFKNYSTGVLLPPKQEDLISPLPGWI 240
           +D +A I  I+P   L    GN    G FE   + F+     +LL    E LI  +  ++
Sbjct: 173 MDKIADISLIVPYIGLALNVGNETAKGNFE---NAFEIAGASILLEFIPELLIPVVGAFL 229

Query: 241 IESLKPVKYIDKKHFFVPSGFSAIELVAGRES-----AIAQIIRTIPQKSYELTFIIGDA 295
           +ES     YID K+  + +  +A+     + S      +AQ + T+  + Y +       
Sbjct: 230 LES-----YIDNKNKIIKTIDNALTKRNEKWSDMYGLIVAQWLSTVNTQFYTI------- 277

Query: 296 KNGCHGSMVVEAFAADKTIKVPYNSVGKGGSKKASLKFQALTSR 339
           K G + ++  +A A ++ IK  YN   +      ++ F  + S+
Sbjct: 278 KEGMYKALNYQAQALEEIIKYRYNIYSEKEKSNINIDFNDINSK 321


>pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
 pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
           Complexed With A Trisaccharide
 pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
           Complexed With Doxorubicin
 pdb|1G9A|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
           Complexed With An Inhibitor (Experiment 3)
 pdb|1G9B|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
           Complexed With An Inhibitor (Experiment 1)
 pdb|1G9C|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
           Complexed With An Inhibitor (Experiment 4)
 pdb|1G9D|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
           Complexed With An Inhibitor (Experiment 2)
 pdb|1S0B|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 4.0
 pdb|1S0C|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 5.0
 pdb|1S0D|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 5.5
 pdb|1S0E|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 6.0
 pdb|1S0F|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 7.0
 pdb|1S0G|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B Apo Form
 pdb|2NP0|A Chain A, Crystal Structure Of The Botulinum Neurotoxin Type B
           Complexed With Synaptotagamin-Ii Ectodomain
          Length = 1290

 Score = 28.5 bits (62), Expect = 6.2,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 24/164 (14%)

Query: 185 LDAVA-IKEILP---LKYTKGNLVKNGGFETGPHTFKNYSTGVLLPPKQEDLISPLPGWI 240
           +D +A I  I+P   L    GN    G FE   + F+     +LL    E LI  +  ++
Sbjct: 610 MDKIADISLIVPYIGLALNVGNETAKGNFE---NAFEIAGASILLEFIPELLIPVVGAFL 666

Query: 241 IESLKPVKYIDKKHFFVPSGFSAIELVAGRES-----AIAQIIRTIPQKSYELTFIIGDA 295
           +ES     YID K+  + +  +A+     + S      +AQ + T+  + Y +       
Sbjct: 667 LES-----YIDNKNKIIKTIDNALTKRNEKWSDMYGLIVAQWLSTVNTQFYTI------- 714

Query: 296 KNGCHGSMVVEAFAADKTIKVPYNSVGKGGSKKASLKFQALTSR 339
           K G + ++  +A A ++ IK  YN   +      ++ F  + S+
Sbjct: 715 KEGMYKALNYQAQALEEIIKYRYNIYSEKEKSNINIDFNDINSK 758


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,990,334
Number of Sequences: 62578
Number of extensions: 518890
Number of successful extensions: 1025
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1023
Number of HSP's gapped (non-prelim): 7
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)