BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017355
         (373 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B4S0J8|CMOA_ALTMD tRNA (cmo5U34)-methyltransferase OS=Alteromonas macleodii (strain
           DSM 17117 / Deep ecotype) GN=cmoA PE=3 SV=1
          Length = 243

 Score = 33.1 bits (74), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 52  NKTVIIGKYSL---PKWETSGLVEYISGGPQPGGFYFAVPRGVHAVRLGNEASISQNVRV 108
           N ++++  ++L   P  +  GL+  I  G  PGG      +  H  R GNE  I  + + 
Sbjct: 125 NASMVVMNFTLQFIPPSDREGLLASIYKGLNPGGILVLSEKVKHPTRSGNELLIDLHHQF 184

Query: 109 KRGSIYSLTFGTTRTCAQDEVL 130
           KR + YS    + +  A ++V+
Sbjct: 185 KRDNGYSELEVSQKRAALEKVM 206


>sp|A8GLS2|LPXD_RICAH UDP-3-O-acylglucosamine N-acyltransferase OS=Rickettsia akari
           (strain Hartford) GN=lpxD PE=3 SV=1
          Length = 346

 Score = 32.7 bits (73), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 13/108 (12%)

Query: 34  DTLLPNGNFELSPKKSNLNKTVIIGKYSLPKWETSGLVEYISGGPQPG--GFYFAVPRGV 91
           D+++ +G+F    +  N+ K   I ++    +   G    I  G + G  GF F+  +GV
Sbjct: 148 DSIIESGSF--IGRGVNIGKNARIEQHVSINYAIIGDDALILAGAKIGQEGFGFSTEKGV 205

Query: 92  H-------AVRLGNEASISQNVRVKRGSIYSLTFGTTRTCAQDEVLRV 132
           H        V++GN   I  N  + RGS+          C  D ++++
Sbjct: 206 HHKIFHIGVVKIGNNVEIGSNTTIDRGSLQDTII--EDLCRIDNLVQI 251


>sp|Q9VVW1|A76A_DROME Accessory gland protein Acp76A OS=Drosophila melanogaster GN=Acp76A
           PE=2 SV=2
          Length = 386

 Score = 32.3 bits (72), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 21/110 (19%)

Query: 157 WAFNATSDVVKVTFHNPGI---QEDPTCGPLLDAVAIKEILPLKYTKGNLVKNGGFETGP 213
           WA +  S++ +   +NPG     +DPTC P++ +++  E +     KG  +        P
Sbjct: 182 WASHFQSEINRYFVNNPGTGYASKDPTCVPMMHSLSSFETMSTDEAKGIYI--------P 233

Query: 214 HTFKNYSTGVLLPPK---QEDLISPLPGWIIESLKPVKYIDKK--HFFVP 258
            +  N    +LLP K    +D++  L   I      V+Y D K  H  +P
Sbjct: 234 FSSANLGMLILLPRKGVTCKDILDNLNNQI-----NVEYNDHKDVHLLLP 278


>sp|Q8ELH4|ACYP_OCEIH Acylphosphatase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM
           11309 / KCTC 3954 / HTE831) GN=acyP PE=3 SV=2
          Length = 91

 Score = 32.0 bits (71), Expect = 7.9,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 279 RTIPQKSYELTFIIGDAKNGCHGSMVVEAFAADKTIKVPYNSVGKGGSKKA---SLKFQA 335
           R   Q++     I+G  +N   GS+++EA   DK +    N V KG +K A    ++ + 
Sbjct: 18  RYFTQQAATENAIVGWVRNEDDGSVLIEAQGEDKNVDAFLNEVEKGPTKFARVQDMEVKE 77

Query: 336 LTSRTRITFYSSNY 349
           L   T +T +   Y
Sbjct: 78  LAEDTELTKFEVKY 91


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,585,310
Number of Sequences: 539616
Number of extensions: 6482135
Number of successful extensions: 11969
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 11967
Number of HSP's gapped (non-prelim): 7
length of query: 373
length of database: 191,569,459
effective HSP length: 119
effective length of query: 254
effective length of database: 127,355,155
effective search space: 32348209370
effective search space used: 32348209370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)