Query 017355
Match_columns 373
No_of_seqs 190 out of 269
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 07:51:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03089 hypothetical protein; 100.0 7E-126 1E-130 942.1 41.8 366 1-373 1-366 (373)
2 PF04862 DUF642: Protein of un 100.0 6.7E-47 1.5E-51 338.6 19.1 157 35-191 1-159 (159)
3 PLN03089 hypothetical protein; 100.0 4.3E-42 9.2E-47 342.4 19.1 169 18-198 180-370 (373)
4 PF04862 DUF642: Protein of un 100.0 1.5E-38 3.2E-43 284.8 17.8 149 202-370 1-159 (159)
5 PF02018 CBM_4_9: Carbohydrate 98.9 7.4E-08 1.6E-12 80.1 14.1 114 201-344 1-122 (131)
6 PF02018 CBM_4_9: Carbohydrate 98.6 2.3E-06 4.9E-11 71.1 15.2 110 35-172 2-126 (131)
7 smart00137 MAM Domain in mepri 94.6 3.1 6.6E-05 36.9 16.1 81 284-371 75-158 (161)
8 cd06263 MAM Meprin, A5 protein 94.3 1.1 2.5E-05 38.8 12.4 81 284-371 71-154 (157)
9 PF00629 MAM: MAM domain; Int 88.8 4.4 9.6E-05 34.2 9.6 80 285-371 73-155 (160)
10 cd06263 MAM Meprin, A5 protein 71.3 28 0.0006 30.1 8.4 80 112-192 71-154 (157)
11 PF00629 MAM: MAM domain; Int 69.5 23 0.0005 29.8 7.3 82 110-192 70-155 (160)
12 PF15425 DUF4627: Domain of un 68.0 72 0.0016 30.3 10.5 86 34-135 6-109 (212)
13 PF15425 DUF4627: Domain of un 65.3 93 0.002 29.5 10.7 84 200-298 5-101 (212)
14 PF14900 DUF4493: Domain of un 60.5 37 0.0008 32.0 7.5 76 63-138 127-222 (235)
15 smart00137 MAM Domain in mepri 58.2 1.1E+02 0.0024 26.9 9.8 80 112-192 75-158 (161)
16 cd08895 SRPBCC_CalC_Aha1-like_ 56.8 1.3E+02 0.0027 25.8 9.8 69 277-347 40-118 (146)
17 cd08901 SRPBCC_CalC_Aha1-like_ 54.4 1.1E+02 0.0024 25.9 8.9 62 280-347 37-99 (136)
18 PF14054 DUF4249: Domain of un 53.8 1.2E+02 0.0027 28.9 10.0 101 7-120 3-108 (298)
19 PF03422 CBM_6: Carbohydrate b 50.2 1.4E+02 0.0031 24.5 13.0 99 260-370 21-124 (125)
20 PF05547 Peptidase_M6: Immune 49.0 1.7E+02 0.0038 32.5 11.3 108 259-371 339-460 (645)
21 PF03422 CBM_6: Carbohydrate b 48.3 1.6E+02 0.0034 24.3 13.3 98 90-191 21-124 (125)
22 PF11182 AlgF: Alginate O-acet 46.9 47 0.001 31.1 5.6 35 84-121 62-96 (181)
23 PF08400 phage_tail_N: Prophag 44.1 74 0.0016 28.5 6.2 65 222-306 7-78 (134)
24 PRK00022 lolB outer membrane l 43.1 62 0.0014 29.9 5.9 20 59-78 42-61 (202)
25 PF08308 PEGA: PEGA domain; I 42.7 70 0.0015 24.2 5.3 36 86-121 31-68 (71)
26 TIGR00548 lolB outer membrane 42.5 66 0.0014 30.0 6.0 18 60-77 43-60 (202)
27 PF08308 PEGA: PEGA domain; I 40.5 1.6E+02 0.0034 22.2 6.9 37 257-293 32-68 (71)
28 PF14344 DUF4397: Domain of un 37.7 56 0.0012 27.2 4.4 37 83-119 36-80 (122)
29 PF08327 AHSA1: Activator of H 34.7 2.4E+02 0.0052 22.6 8.3 66 279-347 29-96 (124)
30 cd08894 SRPBCC_CalC_Aha1-like_ 31.9 3.1E+02 0.0068 23.1 9.2 65 280-347 43-107 (139)
31 PF07172 GRP: Glycine rich pro 31.2 38 0.00082 28.4 2.2 22 3-24 7-28 (95)
32 KOG4509 Uncharacterized conser 29.3 39 0.00084 32.1 2.1 24 236-264 202-225 (247)
33 PF14344 DUF4397: Domain of un 29.1 81 0.0018 26.3 4.0 46 246-291 28-80 (122)
34 TIGR02148 Fibro_Slime fibro-sl 27.8 1.5E+02 0.0032 24.9 5.1 38 84-121 30-73 (90)
35 PF08194 DIM: DIM protein; In 27.6 46 0.001 23.4 1.8 8 34-41 24-31 (36)
36 cd08896 SRPBCC_CalC_Aha1-like_ 25.9 4.1E+02 0.0089 22.5 9.7 70 277-347 40-114 (146)
37 PF07705 CARDB: CARDB; InterP 25.0 3.2E+02 0.007 21.0 9.8 57 280-336 15-72 (101)
38 cd08899 SRPBCC_CalC_Aha1-like_ 24.9 3.9E+02 0.0085 23.2 7.7 62 281-347 48-109 (157)
39 PF07675 Cleaved_Adhesin: Clea 24.7 2.5E+02 0.0055 25.2 6.6 132 39-190 4-167 (167)
40 TIGR02148 Fibro_Slime fibro-sl 23.9 2.2E+02 0.0047 23.9 5.4 41 255-296 31-76 (90)
41 PRK02710 plastocyanin; Provisi 23.9 2.3E+02 0.005 24.0 5.9 14 107-120 83-96 (119)
42 PRK15252 putative fimbrial-lik 23.5 5E+02 0.011 26.8 8.9 92 32-136 28-126 (344)
43 COG3017 LolB Outer membrane li 21.7 3.2E+02 0.007 26.2 6.8 20 59-78 46-65 (206)
44 PF14900 DUF4493: Domain of un 20.8 4.8E+02 0.01 24.5 7.9 15 279-293 191-205 (235)
No 1
>PLN03089 hypothetical protein; Provisional
Probab=100.00 E-value=6.6e-126 Score=942.14 Aligned_cols=366 Identities=63% Similarity=1.044 Sum_probs=349.1
Q ss_pred ChhhHHHHHHHHHHhhhccccccCCCCCCCCCcCCcccCCCCCCCCCCCCCCceEEecCCCCCCcEEeeeEEEEeCCCCC
Q 017355 1 MAWFLSLCFALIFSSLGNGGSATIPATRPSRWLDTLLPNGNFELSPKKSNLNKTVIIGKYSLPKWETSGLVEYISGGPQP 80 (373)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~nLl~NG~FE~gP~~~~~~~~~l~~~s~IpgW~i~G~VeyI~sg~~~ 80 (373)
|++...+|++|++++ |+++.++ ...+||||+|||||++|+++++++++..+.++||||+++|.||||+++|||
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~------~~~~~nLL~NG~FE~gP~~~~~n~t~~~g~s~LPgW~i~g~VeyI~s~~~~ 73 (373)
T PLN03089 1 MALMHSLLLLLLLLL-CAAAASA------APVTDGLLPNGDFETPPKKSQMNGTVVIGKNAIPGWEISGFVEYISSGQKQ 73 (373)
T ss_pred CchhhhHHHHHHHHH-Hhccccc------ccccCCeecCCCccCCCCcCCCCcccccCCCCCCCCEecCcEEEEeCCCcc
Confidence 556666666644444 4444442 136799999999999999988888988999999999999999999999999
Q ss_pred CCceeecCCCCeEEEcCCCceeeEEEEeeCCCEEEEEEEeCCCCCCCceEEEEEcCCcceeeEEeeeecCCcceEEEEEE
Q 017355 81 GGFYFAVPRGVHAVRLGNEASISQNVRVKRGSIYSLTFGTTRTCAQDEVLRVSVPGQSGDLSVQTLFSSNGGDTYAWAFN 160 (373)
Q Consensus 81 g~m~~~vP~G~~AVeLG~e~~I~Q~~~t~~G~~Y~LTFs~ar~ca~~~~l~Vsv~~~~~~~~~~t~y~s~Gw~~~s~~F~ 160 (373)
|||+|.||+|+||||||+|++|+|+|+|++|++|+|||+++|+|+|+|.|+|+|++++++|++|+.|+++||++|+|+|+
T Consensus 74 ~~m~~~vP~G~~Av~LG~e~sI~Q~i~t~~G~~Y~LTFs~ar~c~~~~~v~vsv~~~~~~~~~qt~~~~~gw~~~s~~F~ 153 (373)
T PLN03089 74 GGMLLVVPEGAHAVRLGNEASISQTLTVTKGSYYSLTFSAARTCAQDESLNVSVPPESGVLPLQTLYSSSGWDSYAWAFK 153 (373)
T ss_pred CceeEECCCCchhhhcCCCceEEEEEEccCCCEEEEEEEecCCCCCCceEEEEecCCCcEEeeEEeccCCCcEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCceEEEEEEcCCCCCCCCCCccccceeeeeccCcccccccccccccccccCcccCCCCcceecCCCccCcCCCCCCcE
Q 017355 161 ATSDVVKVTFHNPGIQEDPTCGPLLDAVAIKEILPLKYTKGNLVKNGGFETGPHTFKNYSTGVLLPPKQEDLISPLPGWI 240 (373)
Q Consensus 161 A~~~~t~L~F~s~g~~~~~~CGPvID~V~v~~l~~p~~~~~NLl~NG~FE~Gp~~~pn~~~gvl~~~~~~~~~s~L~GWt 240 (373)
|++++++|+||+++.++|++|||+||||+|+++.+|.++++|||+||+||||||+|||++|||||||+++|++|||||||
T Consensus 154 A~s~~t~l~F~~~~~~~D~~CGPviD~VaIk~l~~P~p~~~Nll~NG~FE~Gp~~~~n~~~gvllp~~~~~~~s~LpgW~ 233 (373)
T PLN03089 154 AESDVVNLVFHNPGVEEDPACGPLIDAVAIKTLFPPRPTKDNLLKNGGFEEGPYVFPNSSWGVLLPPNIEDDTSPLPGWM 233 (373)
T ss_pred EecccEEEEEECcccCCCCcccceeeeEEEeeccCCCccccceeecCCcccCCcccCCCCceEEeCCccccCCCCCCCcE
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccceEEeccCCcccCCCceEEEeccCCcceeeEEEEccCCCeEEEEEEEecCCCCCCCceEEEEEecCceeeEEEEe
Q 017355 241 IESLKPVKYIDKKHFFVPSGFSAIELVAGRESAIAQIIRTIPQKSYELTFIIGDAKNGCHGSMVVEAFAADKTIKVPYNS 320 (373)
Q Consensus 241 v~s~~~V~yIds~~~~vp~G~~aVeL~~g~~~aI~Q~v~T~~G~~Y~LsFs~g~a~n~c~g~~~V~a~ag~~~~~~~~~s 320 (373)
|||+|+|||||++||+||+|+|||||++|+|++|+|+|+|++|++|+|+|+||||+|.|.|+|.|++++|..+++|+|+|
T Consensus 234 i~s~~~V~yids~h~~vp~G~~aveL~~g~e~aI~Q~v~T~~G~~Y~LsFs~g~a~~~c~gs~~V~a~ag~~~~~v~~~s 313 (373)
T PLN03089 234 IESLKAVKYIDSAHFSVPEGKRAVELVSGKESAIAQVVRTVPGKSYNLSFTVGDANNGCHGSMMVEAFAGKDTQKVPYES 313 (373)
T ss_pred EecCccEEEEecCcccCCCCceEEEeccCCcceEEEEEEccCCCEEEEEEEEccCCCCCCCcEEEEEEeecccceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEEEEEEEEccCeeEEEEEecccccccCCCCCccccceeeeEEeecC
Q 017355 321 VGKGGSKKASLKFQALTSRTRITFYSSNYHTKLNDYGHMCGPVLDDVSVLPLR 373 (373)
Q Consensus 321 ~G~gg~~~~~~~F~A~s~~T~l~F~S~~~~~~~d~~~~~cGpviDdV~v~~v~ 373 (373)
+|+|||++++++|+|+++||||+|+|+|||||+||++++||||||||+|++++
T Consensus 314 ~g~gg~~~~s~~F~A~s~~Trl~F~s~~y~~~~d~~~~~cGPvlDdV~v~~~~ 366 (373)
T PLN03089 314 QGKGGFKRASLRFKAVSNRTRITFYSSFYHTKSDDFGSLCGPVVDDVRVVPVR 366 (373)
T ss_pred CCCcceEEEEEEEEeccCCEEEEEEEeecccccCcCCCcccceeeeEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999874
No 2
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=100.00 E-value=6.7e-47 Score=338.64 Aligned_cols=157 Identities=52% Similarity=0.861 Sum_probs=147.9
Q ss_pred CcccCCCCCCCCCCCCCCceEEe-cCCCCCCcEEeeeEEEEeCCCCCCCceeecCCCCeEEEcCCCceeeEEEEeeCCCE
Q 017355 35 TLLPNGNFELSPKKSNLNKTVII-GKYSLPKWETSGLVEYISGGPQPGGFYFAVPRGVHAVRLGNEASISQNVRVKRGSI 113 (373)
Q Consensus 35 nLl~NG~FE~gP~~~~~~~~~l~-~~s~IpgW~i~G~VeyI~sg~~~g~m~~~vP~G~~AVeLG~e~~I~Q~~~t~~G~~ 113 (373)
|||+||+||++|...+++++.+. +.++||||+++|.||||+++|++|+|++.+|+|.||||||++++|+|+|+|++|++
T Consensus 1 nLl~NG~FE~~p~~~~~~~~~~~~~~s~ipGWtv~g~Ve~i~~~~~~g~~~~~~p~G~~aveLg~~~~I~Q~~~t~~G~~ 80 (159)
T PF04862_consen 1 NLLVNGSFEEGPYNSNMNGTSLSDGSSSIPGWTVSGSVEYIDSGHFQGGMYFAVPEGKQAVELGNEGSISQTFTTVPGST 80 (159)
T ss_pred CCccCCCCCCCCccCCCCcceEccCCCcCCCcEEcCEEEEEecCCccCceeeeCCCCceEEEcCCCceEEEEEEccCCCE
Confidence 89999999999998776666665 88999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCceEEEEEcCC-cceeeEEeeeecCCcceEEEEEEEcCceEEEEEEcCCCCCCCCCCccccceeee
Q 017355 114 YSLTFGTTRTCAQDEVLRVSVPGQ-SGDLSVQTLFSSNGGDTYAWAFNATSDVVKVTFHNPGIQEDPTCGPLLDAVAIK 191 (373)
Q Consensus 114 Y~LTFs~ar~ca~~~~l~Vsv~~~-~~~~~~~t~y~s~Gw~~~s~~F~A~~~~t~L~F~s~g~~~~~~CGPvID~V~v~ 191 (373)
|+|||+++|+|++.+.|+|+|+++ ..++++++.|++.||++|+|.|+|.+++++|.|++++.++|++|||+||||+||
T Consensus 81 Y~LtF~~~~~~~~~~~l~V~v~~~~~~~~~~~~~~~~~~w~~~s~~F~A~~t~~~l~f~~~~~~~d~~cGp~iDnV~vk 159 (159)
T PF04862_consen 81 YTLTFSLARNCAQSESLSVSVGGQFSFVVTIQTSYGSGGWDTYSFTFTASSTRITLTFHNPGMESDSACGPVIDNVSVK 159 (159)
T ss_pred EEEEEEecCCCCCCccEEEEEecccceEEEeeccCCCCCcEEEEEEEEeCCCEEEEEEECCCccCCCCceeEEEEEEeC
Confidence 999999999999999999999986 667888888988889999999999999999999999988899999999999997
No 3
>PLN03089 hypothetical protein; Provisional
Probab=100.00 E-value=4.3e-42 Score=342.44 Aligned_cols=169 Identities=29% Similarity=0.478 Sum_probs=149.4
Q ss_pred ccccccCCCCCCCCCcCCcccCCCCCCCCCCC-CCCceEEe------cCCCCCCcEE--eeeEEEEeCCCCCCCceeecC
Q 017355 18 NGGSATIPATRPSRWLDTLLPNGNFELSPKKS-NLNKTVII------GKYSLPKWET--SGLVEYISGGPQPGGFYFAVP 88 (373)
Q Consensus 18 ~~a~~~l~~~~~~~~~~nLl~NG~FE~gP~~~-~~~~~~l~------~~s~IpgW~i--~G~VeyI~sg~~~g~m~~~vP 88 (373)
++++++|++|++. ++|||+||+||+||+.. +..+++++ +.++||||+| .+.|||||+.| |.||
T Consensus 180 ~VaIk~l~~P~p~--~~Nll~NG~FE~Gp~~~~n~~~gvllp~~~~~~~s~LpgW~i~s~~~V~yids~h------~~vp 251 (373)
T PLN03089 180 AVAIKTLFPPRPT--KDNLLKNGGFEEGPYVFPNSSWGVLLPPNIEDDTSPLPGWMIESLKAVKYIDSAH------FSVP 251 (373)
T ss_pred eEEEeeccCCCcc--ccceeecCCcccCCcccCCCCceEEeCCccccCCCCCCCcEEecCccEEEEecCc------ccCC
Confidence 7899999999995 68999999999999864 44566665 5799999999 47999999998 9999
Q ss_pred CCCeEEEc--CCCceeeEEEEeeCCCEEEEEEEe---CCCCCCCceEEEEEcCCcceeeEEeeeecCC---cceEEEEEE
Q 017355 89 RGVHAVRL--GNEASISQNVRVKRGSIYSLTFGT---TRTCAQDEVLRVSVPGQSGDLSVQTLFSSNG---GDTYAWAFN 160 (373)
Q Consensus 89 ~G~~AVeL--G~e~~I~Q~~~t~~G~~Y~LTFs~---ar~ca~~~~l~Vsv~~~~~~~~~~t~y~s~G---w~~~s~~F~ 160 (373)
+|+||||| |+|++|+|+|+|++|+.|+|||++ ++.|++++.|+++++...+.++ |.++| |++++|.|+
T Consensus 252 ~G~~aveL~~g~e~aI~Q~v~T~~G~~Y~LsFs~g~a~~~c~gs~~V~a~ag~~~~~v~----~~s~g~gg~~~~s~~F~ 327 (373)
T PLN03089 252 EGKRAVELVSGKESAIAQVVRTVPGKSYNLSFTVGDANNGCHGSMMVEAFAGKDTQKVP----YESQGKGGFKRASLRFK 327 (373)
T ss_pred CCceEEEeccCCcceEEEEEEccCCCEEEEEEEEccCCCCCCCcEEEEEEeecccceEE----EecCCCcceEEEEEEEE
Confidence 99999999 999999999999999999999997 4589999999999988765544 66664 999999999
Q ss_pred EcCceEEEEEEcCCCCC-----CCCCCccccceeeeeccCccc
Q 017355 161 ATSDVVKVTFHNPGIQE-----DPTCGPLLDAVAIKEILPLKY 198 (373)
Q Consensus 161 A~~~~t~L~F~s~g~~~-----~~~CGPvID~V~v~~l~~p~~ 198 (373)
|++++|||+|+|.+|+. +++|||+||||+|+.+..|+.
T Consensus 328 A~s~~Trl~F~s~~y~~~~d~~~~~cGPvlDdV~v~~~~~~~~ 370 (373)
T PLN03089 328 AVSNRTRITFYSSFYHTKSDDFGSLCGPVVDDVRVVPVRAPRA 370 (373)
T ss_pred eccCCEEEEEEEeecccccCcCCCcccceeeeEEEEEccCCcc
Confidence 99999999999987652 578999999999999987654
No 4
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=100.00 E-value=1.5e-38 Score=284.83 Aligned_cols=149 Identities=40% Similarity=0.635 Sum_probs=123.1
Q ss_pred cccccccccccCcccC-CCCcceecCCCccCcCCCCCCcEEeeccceEEeccCCcc------cCCCceEEEeccCCccee
Q 017355 202 NLVKNGGFETGPHTFK-NYSTGVLLPPKQEDLISPLPGWIIESLKPVKYIDKKHFF------VPSGFSAIELVAGRESAI 274 (373)
Q Consensus 202 NLl~NG~FE~Gp~~~p-n~~~gvl~~~~~~~~~s~L~GWtv~s~~~V~yIds~~~~------vp~G~~aVeL~~g~~~aI 274 (373)
|||+||+||++|+.++ +.++ .+++.++||||++++ .||||++.|++ +|+|+++||| |++++|
T Consensus 1 nLl~NG~FE~~p~~~~~~~~~-------~~~~~s~ipGWtv~g--~Ve~i~~~~~~g~~~~~~p~G~~aveL--g~~~~I 69 (159)
T PF04862_consen 1 NLLVNGSFEEGPYNSNMNGTS-------LSDGSSSIPGWTVSG--SVEYIDSGHFQGGMYFAVPEGKQAVEL--GNEGSI 69 (159)
T ss_pred CCccCCCCCCCCccCCCCcce-------EccCCCcCCCcEEcC--EEEEEecCCccCceeeeCCCCceEEEc--CCCceE
Confidence 8999999999999755 4444 456789999999975 49999999997 9999999999 889999
Q ss_pred eEEEEccCCCeEEEEEEEecCCCCCCCc--eEEEEEecCceeeEEEEecC-CcceEEEEEEEEEccCeeEEEEEeccccc
Q 017355 275 AQIIRTIPQKSYELTFIIGDAKNGCHGS--MVVEAFAADKTIKVPYNSVG-KGGSKKASLKFQALTSRTRITFYSSNYHT 351 (373)
Q Consensus 275 ~Q~v~T~~G~~Y~LsFs~g~a~n~c~g~--~~V~a~ag~~~~~~~~~s~G-~gg~~~~~~~F~A~s~~T~l~F~S~~~~~ 351 (373)
+|+|+|++|++|+|+|+++ +.|.+. +.|+|... .+..+++++.. +++|++++++|+| ++ ||++|.+..+++
T Consensus 70 ~Q~~~t~~G~~Y~LtF~~~---~~~~~~~~l~V~v~~~-~~~~~~~~~~~~~~~w~~~s~~F~A-~~-t~~~l~f~~~~~ 143 (159)
T PF04862_consen 70 SQTFTTVPGSTYTLTFSLA---RNCAQSESLSVSVGGQ-FSFVVTIQTSYGSGGWDTYSFTFTA-SS-TRITLTFHNPGM 143 (159)
T ss_pred EEEEEccCCCEEEEEEEec---CCCCCCccEEEEEecc-cceEEEeeccCCCCCcEEEEEEEEe-CC-CEEEEEEECCCc
Confidence 9999999999999999997 556554 55555443 47788887664 4569999999999 44 777777776777
Q ss_pred ccCCCCCccccceeeeEEe
Q 017355 352 KLNDYGHMCGPVLDDVSVL 370 (373)
Q Consensus 352 ~~d~~~~~cGpviDdV~v~ 370 (373)
+.| .+|||+||||+|.
T Consensus 144 ~~d---~~cGp~iDnV~vk 159 (159)
T PF04862_consen 144 ESD---SACGPVIDNVSVK 159 (159)
T ss_pred cCC---CCceeEEEEEEeC
Confidence 644 5999999999983
No 5
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=98.87 E-value=7.4e-08 Score=80.08 Aligned_cols=114 Identities=26% Similarity=0.365 Sum_probs=74.8
Q ss_pred ccccccccccccCcccCCCCcceecCCCccCcCCCCCCcEEeecc-ceEEeccCCcccCCCceEEEeccCCc--ceeeE-
Q 017355 201 GNLVKNGGFETGPHTFKNYSTGVLLPPKQEDLISPLPGWIIESLK-PVKYIDKKHFFVPSGFSAIELVAGRE--SAIAQ- 276 (373)
Q Consensus 201 ~NLl~NG~FE~Gp~~~pn~~~gvl~~~~~~~~~s~L~GWtv~s~~-~V~yIds~~~~vp~G~~aVeL~~g~~--~aI~Q- 276 (373)
.|||+||+||+| .+.+|...... +...++.. .|.+++.+..... ..+.|
T Consensus 1 ~nli~N~~Fe~~----------------------~~~~W~~~~~~~~~~~~~~~-----~g~~~l~v~~~~~~~~~~~~~ 53 (131)
T PF02018_consen 1 GNLIKNGGFEDG----------------------GLSGWSFWGNSGASASVDNA-----SGNYSLKVSNRSATWDGQSQQ 53 (131)
T ss_dssp GBSSSSTTSTTT----------------------STTTEEEESSTTEEEEEEEC-----SSSEEEEEECCSSGCGEEEEE
T ss_pred CCEEECCCccCC----------------------CCCCCEEccCCCEEEEEEcC-----CCeEEEEEECCCCCcccccee
Confidence 499999999983 23578886422 24455544 7999998865543 23333
Q ss_pred -EEEccCCCeEEEEEEEecCCCCCCCceEEEEEecCc--eeeEEE-EecCCcceEEEEEEEEEccCeeEEEE
Q 017355 277 -IIRTIPQKSYELTFIIGDAKNGCHGSMVVEAFAADK--TIKVPY-NSVGKGGSKKASLKFQALTSRTRITF 344 (373)
Q Consensus 277 -~v~T~~G~~Y~LsFs~g~a~n~c~g~~~V~a~ag~~--~~~~~~-~s~G~gg~~~~~~~F~A~s~~T~l~F 344 (373)
.+...+|++|+|+|++-.... ..+.+.+..... ...+.. ....++.|++.+++|++..+..++.|
T Consensus 54 ~~~~l~~G~~Y~~s~~vk~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~s~~ft~~~~~~~~~l 122 (131)
T PF02018_consen 54 QTISLKPGKTYTVSFWVKADSG---GTVSVSLRDEDGSPYNWYTGQTVTITGEWTKYSGTFTAPSDDDTVRL 122 (131)
T ss_dssp EEEEE-TTSEEEEEEEEEESSS---EEEEEEEEESSTTTEEEEEEEEEEETSSEEEEEEEEEEESSCEEEEE
T ss_pred cceEecCCCEEEEEEEEEeCCC---CEEEEEEEEcCCCCcEEEEEEEEECCCCcEEEEEEEEECCCCceEEE
Confidence 467889999999999954443 555565555444 222322 33455789999999999966655554
No 6
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=98.61 E-value=2.3e-06 Score=71.13 Aligned_cols=110 Identities=24% Similarity=0.394 Sum_probs=67.4
Q ss_pred CcccCCCCCCCCCCCCCCceEEecCCCCCCcEEeee---EEEEeCCCCCCCceeecCCCCeEEEc-CCC---ceeeE--E
Q 017355 35 TLLPNGNFELSPKKSNLNKTVIIGKYSLPKWETSGL---VEYISGGPQPGGFYFAVPRGVHAVRL-GNE---ASISQ--N 105 (373)
Q Consensus 35 nLl~NG~FE~gP~~~~~~~~~l~~~s~IpgW~i~G~---VeyI~sg~~~g~m~~~vP~G~~AVeL-G~e---~~I~Q--~ 105 (373)
|||.||+||++ .+.+|...+. ...+ ..+.|.+++++ +.. ..+.| .
T Consensus 2 nli~N~~Fe~~---------------~~~~W~~~~~~~~~~~~-----------~~~~g~~~l~v~~~~~~~~~~~~~~~ 55 (131)
T PF02018_consen 2 NLIKNGGFEDG---------------GLSGWSFWGNSGASASV-----------DNASGNYSLKVSNRSATWDGQSQQQT 55 (131)
T ss_dssp BSSSSTTSTTT---------------STTTEEEESSTTEEEEE-----------EECSSSEEEEEECCSSGCGEEEEEEE
T ss_pred CEEECCCccCC---------------CCCCCEEccCCCEEEEE-----------EcCCCeEEEEEECCCCCccccceecc
Confidence 89999999982 2457777442 2222 22278888888 221 23333 4
Q ss_pred EEeeCCCEEEEEEEeCCCCCCCceEEEEEcCCcc---e-eeEEeeeecCCcceEEEEEEEc--CceEEEEEEc
Q 017355 106 VRVKRGSIYSLTFGTTRTCAQDEVLRVSVPGQSG---D-LSVQTLFSSNGGDTYAWAFNAT--SDVVKVTFHN 172 (373)
Q Consensus 106 ~~t~~G~~Y~LTFs~ar~ca~~~~l~Vsv~~~~~---~-~~~~t~y~s~Gw~~~s~~F~A~--~~~t~L~F~s 172 (373)
+.+.+|..|+|+|.+-.... ..+++.+..... . +.-+..-.+..|+.++..|++. .+.++|.|+.
T Consensus 56 ~~l~~G~~Y~~s~~vk~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~s~~ft~~~~~~~~~l~~~~ 126 (131)
T PF02018_consen 56 ISLKPGKTYTVSFWVKADSG--GTVSVSLRDEDGSPYNWYTGQTVTITGEWTKYSGTFTAPSDDDTVRLYFEI 126 (131)
T ss_dssp EEE-TTSEEEEEEEEEESSS--EEEEEEEEESSTTTEEEEEEEEEEETSSEEEEEEEEEEESSCEEEEEEEEE
T ss_pred eEecCCCEEEEEEEEEeCCC--CEEEEEEEEcCCCCcEEEEEEEEECCCCcEEEEEEEEECCCCceEEEEEEe
Confidence 68999999999999943333 444444444333 1 2211223345699999999888 4455666665
No 7
>smart00137 MAM Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others). Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.
Probab=94.60 E-value=3.1 Score=36.89 Aligned_cols=81 Identities=17% Similarity=0.153 Sum_probs=55.4
Q ss_pred CeEEEEEEEecCCCCCCCceEEEEEe-cCceeeEEEEecCCc--ceEEEEEEEEEccCeeEEEEEecccccccCCCCCcc
Q 017355 284 KSYELTFIIGDAKNGCHGSMVVEAFA-ADKTIKVPYNSVGKG--GSKKASLKFQALTSRTRITFYSSNYHTKLNDYGHMC 360 (373)
Q Consensus 284 ~~Y~LsFs~g~a~n~c~g~~~V~a~a-g~~~~~~~~~s~G~g--g~~~~~~~F~A~s~~T~l~F~S~~~~~~~d~~~~~c 360 (373)
..+-|+|++--.+.. .|.+.|.+.. +....+.-++..|.- .|+++++.+......-+|.|.... .. +...
T Consensus 75 ~~~cl~F~Y~m~G~~-~g~L~V~~~~~~~~~~~~lw~~~g~~~~~W~~~~v~l~~~~~~fqi~fe~~~----g~--~~~g 147 (161)
T smart00137 75 STHCLTFWYYMYGSG-SGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSKWQQPFQVVFEGTR----GK--GHSG 147 (161)
T ss_pred CCeEEEEEEEecCCC-CCEEEEEEEeCCCCCceEeEEEcCCCCCceEEEEEEecCCCCcEEEEEEEEE----cC--Cccc
Confidence 356799999666533 6677787653 333334456666664 499999999988888899997751 21 2233
Q ss_pred ccceeeeEEee
Q 017355 361 GPVLDDVSVLP 371 (373)
Q Consensus 361 GpviDdV~v~~ 371 (373)
-=+||||++..
T Consensus 148 ~IAiDDI~i~~ 158 (161)
T smart00137 148 YIALDDILLSN 158 (161)
T ss_pred eEEEeEEEeec
Confidence 35899999974
No 8
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=94.27 E-value=1.1 Score=38.82 Aligned_cols=81 Identities=20% Similarity=0.198 Sum_probs=57.5
Q ss_pred CeEEEEEEEecCCCCCCCceEEEEEecCc-eeeEEEEecCC--cceEEEEEEEEEccCeeEEEEEecccccccCCCCCcc
Q 017355 284 KSYELTFIIGDAKNGCHGSMVVEAFAADK-TIKVPYNSVGK--GGSKKASLKFQALTSRTRITFYSSNYHTKLNDYGHMC 360 (373)
Q Consensus 284 ~~Y~LsFs~g~a~n~c~g~~~V~a~ag~~-~~~~~~~s~G~--gg~~~~~~~F~A~s~~T~l~F~S~~~~~~~d~~~~~c 360 (373)
...-|+|.+--.+.. .|.+.|.+..... ....-++.++. ..|++.++++.+....-+|.|....- . +...
T Consensus 71 ~~~Cl~F~y~~~g~~-~g~L~V~v~~~~~~~~~~lw~~~~~~~~~W~~~~v~l~~~~~~fqi~fe~~~~---~---~~~g 143 (157)
T cd06263 71 SSHCLSFWYHMYGSG-VGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRG---S---GSRG 143 (157)
T ss_pred CCeEEEEEEEecCCC-CCeEEEEEEeCCCCcceEEEEEECCCCCeeEEEEEEECCCCCceEEEEEEEEC---C---Cccc
Confidence 345599999666654 6788888766655 34444555555 46999999999998899999988621 1 2334
Q ss_pred ccceeeeEEee
Q 017355 361 GPVLDDVSVLP 371 (373)
Q Consensus 361 GpviDdV~v~~ 371 (373)
.=+||||+|..
T Consensus 144 ~IAIDdI~l~~ 154 (157)
T cd06263 144 DIALDDISLSP 154 (157)
T ss_pred cEEEeEEEEec
Confidence 45899999974
No 9
>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu. The MAM domain consists of approximately 170 amino acids. It occurs in several cell surface proteins, including Meprins, and is thought to function as an interaction or adhesion domain []. The domain has been shown to play a role in homodimerization of protein-tyrosine phosphatase mu [] and appears to help determine the specificity of these interactions. It has been reported that certain cysteine mutations in the MAM domain of murine meprin A result in the formation of monomeric meprin, which has altered stability and activity []. This indicates that these domain-domain interactions are critical for structure and function of the enzyme. It has also been shown that the MAM domain of meprins is necessary for correct folding and transport through the secretory pathway []. ; GO: 0016020 membrane; PDB: 2C9A_A 2V5Y_A.
Probab=88.82 E-value=4.4 Score=34.21 Aligned_cols=80 Identities=16% Similarity=0.158 Sum_probs=42.9
Q ss_pred eEEEEEEEecCCCCCCCceEEEEEecC-ceeeEEEEec--CCcceEEEEEEEEEccCeeEEEEEecccccccCCCCCccc
Q 017355 285 SYELTFIIGDAKNGCHGSMVVEAFAAD-KTIKVPYNSV--GKGGSKKASLKFQALTSRTRITFYSSNYHTKLNDYGHMCG 361 (373)
Q Consensus 285 ~Y~LsFs~g~a~n~c~g~~~V~a~ag~-~~~~~~~~s~--G~gg~~~~~~~F~A~s~~T~l~F~S~~~~~~~d~~~~~cG 361 (373)
.+-|+|++--.+.. .+.+.|.+.... .......... ....|++..+++.+....-+|.|....- ....+.
T Consensus 73 ~~cl~F~y~~~g~~-~~~L~V~v~~~~~~~~~~l~~~~~~~~~~W~~~~v~l~~~~~~~~i~f~~~~~---~~~~~~--- 145 (160)
T PF00629_consen 73 NSCLSFWYYMYGSS-VGTLRVYVREESTGNSTPLWSITGSQGNSWQRAQVNLPPISSPFQIIFEAIRG---SSYRGD--- 145 (160)
T ss_dssp --EEEEEEEEE-SS-SEEEEEEEEETT----S-SEEE-----SSEEEEEEEE---TS-EEEEEEEEE-----SS--E---
T ss_pred cceeEEEEeecccc-ceeeEEEEEecCCccceeeeeecCCCcCCccceEEEcccccccceEEEEEEEc---CCCceE---
Confidence 55599999654443 466777665552 2222222222 3357999999999998889999977521 111122
Q ss_pred cceeeeEEee
Q 017355 362 PVLDDVSVLP 371 (373)
Q Consensus 362 pviDdV~v~~ 371 (373)
=+||||+|..
T Consensus 146 iaiDdi~~~~ 155 (160)
T PF00629_consen 146 IAIDDISLSP 155 (160)
T ss_dssp EEEEEEEEES
T ss_pred EEEEEEEEeC
Confidence 4699999973
No 10
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=71.25 E-value=28 Score=30.07 Aligned_cols=80 Identities=18% Similarity=0.103 Sum_probs=50.3
Q ss_pred CEEEEEEEeCCCCCCCceEEEEEcCCcc--eeeEEeeee--cCCcceEEEEEEEcCceEEEEEEcCCCCCCCCCCccccc
Q 017355 112 SIYSLTFGTTRTCAQDEVLRVSVPGQSG--DLSVQTLFS--SNGGDTYAWAFNATSDVVKVTFHNPGIQEDPTCGPLLDA 187 (373)
Q Consensus 112 ~~Y~LTFs~ar~ca~~~~l~Vsv~~~~~--~~~~~t~y~--s~Gw~~~s~~F~A~~~~t~L~F~s~g~~~~~~CGPvID~ 187 (373)
...-|+|.+-..-.....|+|.+-.... ..++-.... ...|......+.+.....+|+|....- .+....=.|||
T Consensus 71 ~~~Cl~F~y~~~g~~~g~L~V~v~~~~~~~~~~lw~~~~~~~~~W~~~~v~l~~~~~~fqi~fe~~~~-~~~~g~IAIDd 149 (157)
T cd06263 71 SSHCLSFWYHMYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRG-SGSRGDIALDD 149 (157)
T ss_pred CCeEEEEEEEecCCCCCeEEEEEEeCCCCcceEEEEEECCCCCeeEEEEEEECCCCCceEEEEEEEEC-CCccccEEEeE
Confidence 3455999982211124567777765443 222222222 345999999999988999999998421 12344567899
Q ss_pred eeeee
Q 017355 188 VAIKE 192 (373)
Q Consensus 188 V~v~~ 192 (373)
|.|..
T Consensus 150 I~l~~ 154 (157)
T cd06263 150 ISLSP 154 (157)
T ss_pred EEEec
Confidence 99874
No 11
>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu. The MAM domain consists of approximately 170 amino acids. It occurs in several cell surface proteins, including Meprins, and is thought to function as an interaction or adhesion domain []. The domain has been shown to play a role in homodimerization of protein-tyrosine phosphatase mu [] and appears to help determine the specificity of these interactions. It has been reported that certain cysteine mutations in the MAM domain of murine meprin A result in the formation of monomeric meprin, which has altered stability and activity []. This indicates that these domain-domain interactions are critical for structure and function of the enzyme. It has also been shown that the MAM domain of meprins is necessary for correct folding and transport through the secretory pathway []. ; GO: 0016020 membrane; PDB: 2C9A_A 2V5Y_A.
Probab=69.49 E-value=23 Score=29.76 Aligned_cols=82 Identities=13% Similarity=0.060 Sum_probs=42.6
Q ss_pred CCCEEEEEEEeCCCCCCCceEEEEEcCCcc--eeeEEeee--ecCCcceEEEEEEEcCceEEEEEEcCCCCCCCCCCccc
Q 017355 110 RGSIYSLTFGTTRTCAQDEVLRVSVPGQSG--DLSVQTLF--SSNGGDTYAWAFNATSDVVKVTFHNPGIQEDPTCGPLL 185 (373)
Q Consensus 110 ~G~~Y~LTFs~ar~ca~~~~l~Vsv~~~~~--~~~~~t~y--~s~Gw~~~s~~F~A~~~~t~L~F~s~g~~~~~~CGPvI 185 (373)
....+-|+|.+-..-.....|+|.+-.... ..++-... ....|....+.+.+.....+|+|....-. ...-.=.|
T Consensus 70 ~~~~~cl~F~y~~~g~~~~~L~V~v~~~~~~~~~~l~~~~~~~~~~W~~~~v~l~~~~~~~~i~f~~~~~~-~~~~~iai 148 (160)
T PF00629_consen 70 ASGNSCLSFWYYMYGSSVGTLRVYVREESTGNSTPLWSITGSQGNSWQRAQVNLPPISSPFQIIFEAIRGS-SYRGDIAI 148 (160)
T ss_dssp -SS--EEEEEEEEE-SSSEEEEEEEEETT----S-SEEE-----SSEEEEEEEE---TS-EEEEEEEEE---SS--EEEE
T ss_pred ccccceeEEEEeeccccceeeEEEEEecCCccceeeeeecCCCcCCccceEEEcccccccceEEEEEEEcC-CCceEEEE
Confidence 333566999984322223458887766511 11111112 23459999999999999999999974211 11234568
Q ss_pred cceeeee
Q 017355 186 DAVAIKE 192 (373)
Q Consensus 186 D~V~v~~ 192 (373)
|||.|..
T Consensus 149 Ddi~~~~ 155 (160)
T PF00629_consen 149 DDISLSP 155 (160)
T ss_dssp EEEEEES
T ss_pred EEEEEeC
Confidence 9999974
No 12
>PF15425 DUF4627: Domain of unknown function (DUF4627); PDB: 3SEE_A.
Probab=68.01 E-value=72 Score=30.28 Aligned_cols=86 Identities=22% Similarity=0.394 Sum_probs=36.8
Q ss_pred CCcccCCCCCCCCCCC-CCCceEEecCCCCCCcEE-----ee--eEEEEeCCCCCCCceeecCCCCeEEEc-CCC-----
Q 017355 34 DTLLPNGNFELSPKKS-NLNKTVIIGKYSLPKWET-----SG--LVEYISGGPQPGGFYFAVPRGVHAVRL-GNE----- 99 (373)
Q Consensus 34 ~nLl~NG~FE~gP~~~-~~~~~~l~~~s~IpgW~i-----~G--~VeyI~sg~~~g~m~~~vP~G~~AVeL-G~e----- 99 (373)
.|||+||+|.+ |... ..+. ....+..|-+ .| .+-++.++.++- ..++++ +-+
T Consensus 6 QnLIkN~~F~t-~Lt~e~~~a----s~~T~~~Wfavnde~~G~Tt~a~~~tnD~k~---------~na~~is~~~~~tsW 71 (212)
T PF15425_consen 6 QNLIKNGDFDT-PLTNENTTA----SNTTFGKWFAVNDEWDGATTIAWINTNDQKT---------GNAWGISSWDKQTSW 71 (212)
T ss_dssp ----SSTT--S-----B-SSG----GGS-TTSEEEEE-S-TTS-EEEEEE-S-TTS----------EEEEETT-SS---T
T ss_pred hhhhhcCccCc-chhccccCc----CcccccceEEEecccCCceEeeeeccCcccc---------cceEEEeecccCcHH
Confidence 59999999996 5322 1111 1233556643 12 344443333221 145666 322
Q ss_pred --ceeeEEE-EeeCCCEEEEEEEe-CCCCCCCceEEEEEc
Q 017355 100 --ASISQNV-RVKRGSIYSLTFGT-TRTCAQDEVLRVSVP 135 (373)
Q Consensus 100 --~~I~Q~~-~t~~G~~Y~LTFs~-ar~ca~~~~l~Vsv~ 135 (373)
+-+.|.+ .-..-..|.|+|++ +.+... .++|++-
T Consensus 72 ykafLaQr~~~gae~~mYtLsF~AkA~t~g~--qv~V~Ir 109 (212)
T PF15425_consen 72 YKAFLAQRYTNGAEKGMYTLSFDAKADTNGT--QVHVFIR 109 (212)
T ss_dssp TTEEEEEEE-S---SSEEEEEEEEEESSTT---EEEEEEE
T ss_pred HHHHHHHHHhcccccceEEEEEEeecccCCC--cEEEEEE
Confidence 6788998 44556689999999 444321 3555554
No 13
>PF15425 DUF4627: Domain of unknown function (DUF4627); PDB: 3SEE_A.
Probab=65.30 E-value=93 Score=29.55 Aligned_cols=84 Identities=25% Similarity=0.393 Sum_probs=37.3
Q ss_pred cccccccccccccCcccCCCCcceecCCCccCcCCCCCCcEEeec-----cceEEeccCCcccCCCceEEEeccCCc---
Q 017355 200 KGNLVKNGGFETGPHTFKNYSTGVLLPPKQEDLISPLPGWIIESL-----KPVKYIDKKHFFVPSGFSAIELVAGRE--- 271 (373)
Q Consensus 200 ~~NLl~NG~FE~Gp~~~pn~~~gvl~~~~~~~~~s~L~GWtv~s~-----~~V~yIds~~~~vp~G~~aVeL~~g~~--- 271 (373)
+.|||+||+|.+ |-.+-+.+- ....+.-|-++.. ..+-++.++.-+ .| .+++. ++-+
T Consensus 5 AQnLIkN~~F~t-~Lt~e~~~a----------s~~T~~~Wfavnde~~G~Tt~a~~~tnD~k--~~-na~~i-s~~~~~t 69 (212)
T PF15425_consen 5 AQNLIKNGDFDT-PLTNENTTA----------SNTTFGKWFAVNDEWDGATTIAWINTNDQK--TG-NAWGI-SSWDKQT 69 (212)
T ss_dssp -----SSTT--S-----B-SSG----------GGS-TTSEEEEE-S-TTS-EEEEEE-S-TT--S--EEEEE-TT-SS--
T ss_pred hhhhhhcCccCc-chhccccCc----------CcccccceEEEecccCCceEeeeeccCccc--cc-ceEEE-eecccCc
Confidence 569999999995 433322221 2334566766521 123344333211 12 56777 2222
Q ss_pred ----ceeeEEE-EccCCCeEEEEEEEecCCCC
Q 017355 272 ----SAIAQII-RTIPQKSYELTFIIGDAKNG 298 (373)
Q Consensus 272 ----~aI~Q~v-~T~~G~~Y~LsFs~g~a~n~ 298 (373)
+=+.|.+ .-..-.-|+|+|++-.-.++
T Consensus 70 sWykafLaQr~~~gae~~mYtLsF~AkA~t~g 101 (212)
T PF15425_consen 70 SWYKAFLAQRYTNGAEKGMYTLSFDAKADTNG 101 (212)
T ss_dssp -TTTEEEEEEE-S---SSEEEEEEEEEESSTT
T ss_pred HHHHHHHHHHHhcccccceEEEEEEeecccCC
Confidence 5789999 56777889999998655544
No 14
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=60.50 E-value=37 Score=32.05 Aligned_cols=76 Identities=24% Similarity=0.405 Sum_probs=50.8
Q ss_pred CCcEE------eeeEEEEeC-CCCCCCceeecCCCCeEEEc--------CCCceeeEEE-----EeeCCCEEEEEEEeCC
Q 017355 63 PKWET------SGLVEYISG-GPQPGGFYFAVPRGVHAVRL--------GNEASISQNV-----RVKRGSIYSLTFGTTR 122 (373)
Q Consensus 63 pgW~i------~G~VeyI~s-g~~~g~m~~~vP~G~~AVeL--------G~e~~I~Q~~-----~t~~G~~Y~LTFs~ar 122 (373)
..|++ .+.++|-.. .......+|.+|++...+.+ |.+-.-.+++ .+.+|.+|.|+|.+..
T Consensus 127 ~~y~vtV~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~~~l~~~~~~t~~~g~~~~~~~~~~~~~~~v~~~~~y~lt~~~~~ 206 (235)
T PF14900_consen 127 SDYSVTVSTGAGGSVTFNKDETTSDRSAYFKAGEGGETLTLTLSGTNKDGESVSKEQTINKDISNVKAGDHYKLTFDPSD 206 (235)
T ss_pred cceEEEEEccCCccEEEeeccCCCCcceEEECCCCCceEEEEEEEEecCCcccccceeEeeccCcccCceEEEEEEeecc
Confidence 66765 236777321 11235578999997777776 2122344454 5789999999999985
Q ss_pred CCCCCceEEEEEcCCc
Q 017355 123 TCAQDEVLRVSVPGQS 138 (373)
Q Consensus 123 ~ca~~~~l~Vsv~~~~ 138 (373)
.-.+...|.+.+....
T Consensus 207 ~~~g~~~i~I~vd~~~ 222 (235)
T PF14900_consen 207 SSAGSIGITITVDDTT 222 (235)
T ss_pred CCCCeeEEEEEEeCCe
Confidence 5567778888887653
No 15
>smart00137 MAM Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others). Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.
Probab=58.20 E-value=1.1e+02 Score=26.86 Aligned_cols=80 Identities=16% Similarity=0.046 Sum_probs=47.7
Q ss_pred CEEEEEEEeCCCCCCCceEEEEEcCCcce--eeEEeeeec--CCcceEEEEEEEcCceEEEEEEcCCCCCCCCCCccccc
Q 017355 112 SIYSLTFGTTRTCAQDEVLRVSVPGQSGD--LSVQTLFSS--NGGDTYAWAFNATSDVVKVTFHNPGIQEDPTCGPLLDA 187 (373)
Q Consensus 112 ~~Y~LTFs~ar~ca~~~~l~Vsv~~~~~~--~~~~t~y~s--~Gw~~~s~~F~A~~~~t~L~F~s~g~~~~~~CGPvID~ 187 (373)
..+-|+|.+-..-.....|+|++-...+. -++-..... ..|......+.......+|+|...-- .+...-=.|||
T Consensus 75 ~~~cl~F~Y~m~G~~~g~L~V~~~~~~~~~~~~lw~~~g~~~~~W~~~~v~l~~~~~~fqi~fe~~~g-~~~~g~IAiDD 153 (161)
T smart00137 75 STHCLTFWYYMYGSGSGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSKWQQPFQVVFEGTRG-KGHSGYIALDD 153 (161)
T ss_pred CCeEEEEEEEecCCCCCEEEEEEEeCCCCCceEeEEEcCCCCCceEEEEEEecCCCCcEEEEEEEEEc-CCccceEEEeE
Confidence 35679999832212233477777531111 112111122 23999999999888889999998421 12344568999
Q ss_pred eeeee
Q 017355 188 VAIKE 192 (373)
Q Consensus 188 V~v~~ 192 (373)
|.|..
T Consensus 154 I~i~~ 158 (161)
T smart00137 154 ILLSN 158 (161)
T ss_pred EEeec
Confidence 99874
No 16
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=56.80 E-value=1.3e+02 Score=25.76 Aligned_cols=69 Identities=12% Similarity=0.117 Sum_probs=39.8
Q ss_pred EEEccCCCeEEEEEEEec------CCCCCCCceEEEEEecCceeeEEEEec--C--CcceEEEEEEEEEccCeeEEEEEe
Q 017355 277 IIRTIPQKSYELTFIIGD------AKNGCHGSMVVEAFAADKTIKVPYNSV--G--KGGSKKASLKFQALTSRTRITFYS 346 (373)
Q Consensus 277 ~v~T~~G~~Y~LsFs~g~------a~n~c~g~~~V~a~ag~~~~~~~~~s~--G--~gg~~~~~~~F~A~s~~T~l~F~S 346 (373)
.++-.+|..|++.|...+ .++.+...+.|....- .+.+.|.-. + ..+-...+++|++....|+|+|.-
T Consensus 40 ~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~p--~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~T~lt~~~ 117 (146)
T cd08895 40 EFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELVP--NERIVYTDVFDDPSLSGEMTMTWTLSPVSGGTDVTIVQ 117 (146)
T ss_pred EEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEcC--CCEEEEEEEecCCCCCceEEEEEEEEecCCCEEEEEEE
Confidence 556678888888886533 1121222233332223 344555421 1 112347889999999999999966
Q ss_pred c
Q 017355 347 S 347 (373)
Q Consensus 347 ~ 347 (373)
.
T Consensus 118 ~ 118 (146)
T cd08895 118 S 118 (146)
T ss_pred e
Confidence 4
No 17
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=54.41 E-value=1.1e+02 Score=25.87 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=38.9
Q ss_pred ccCCCeEEEEEEEecCCCCCCCceEEEEEecCceeeEEEEecCCcceEEEEEEEEEcc-CeeEEEEEec
Q 017355 280 TIPQKSYELTFIIGDAKNGCHGSMVVEAFAADKTIKVPYNSVGKGGSKKASLKFQALT-SRTRITFYSS 347 (373)
Q Consensus 280 T~~G~~Y~LsFs~g~a~n~c~g~~~V~a~ag~~~~~~~~~s~G~gg~~~~~~~F~A~s-~~T~l~F~S~ 347 (373)
..+|..|+..|.+.+.. ....+... .....+.|+-...+.-.+.+++|.+.. ..|+|++.-.
T Consensus 37 ~~~Gg~~~~~~~~~~~~----~~g~~~~~--~p~~~l~~~w~~~~~~s~v~~~l~~~~~ggT~ltl~~~ 99 (136)
T cd08901 37 LEEGKTVTWDWEMYGAS----VPVNVLEI--EPNKRIVIEWGDPGEPTTVEWTFEELDDGRTFVTITES 99 (136)
T ss_pred ccCCCEEEEEEEccCCc----eEEEEEEE--cCCCEEEEEecCCCCCEEEEEEEEECCCCcEEEEEEEC
Confidence 34788998888874321 12233322 334445554333344677899999988 8999999765
No 18
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=53.78 E-value=1.2e+02 Score=28.88 Aligned_cols=101 Identities=21% Similarity=0.193 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhccccccCCCCCCCCCcCCcccCCCCCCCCCCCCC--CceEEecCCCCCCcEEee-eEEEEeCCCCCCCc
Q 017355 7 LCFALIFSSLGNGGSATIPATRPSRWLDTLLPNGNFELSPKKSNL--NKTVIIGKYSLPKWETSG-LVEYISGGPQPGGF 83 (373)
Q Consensus 7 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~nLl~NG~FE~gP~~~~~--~~~~l~~~s~IpgW~i~G-~VeyI~sg~~~g~m 83 (373)
|++.++++..| .+.+.+..+... .-|+.||.++..+..... ..+.-......+.. +.+ .|+....+....-+
T Consensus 3 l~ll~l~l~sC---~~~i~~~~~~~~-~~lVV~~~i~~~~~~~~V~Ls~s~~~~~~~~~~~-v~~A~V~i~~~~~~~~~~ 77 (298)
T PF14054_consen 3 LLLLLLLLSSC---EKEIDIDDLDEE-PKLVVEGYITNPGDPQTVRLSRSVPYFDNSPPEP-VSGATVTIYEDGQGNEYL 77 (298)
T ss_pred HHHHHHHHhcc---CcccccCcCCCC-CeEEEEEEEecCCCcEEEEEEEeecccCCCCCcc-cCCcEEEEEeCCCcceEe
Confidence 44555666666 555554244333 579999999943322110 00000011111111 555 66653444321111
Q ss_pred eeecCC--CCeEEEcCCCceeeEEEEeeCCCEEEEEEEe
Q 017355 84 YFAVPR--GVHAVRLGNEASISQNVRVKRGSIYSLTFGT 120 (373)
Q Consensus 84 ~~~vP~--G~~AVeLG~e~~I~Q~~~t~~G~~Y~LTFs~ 120 (373)
...... |.+- -...+...+|+.|+|+..+
T Consensus 78 ~~~~~~~~g~Y~--------~~~~~~~~~G~~Y~L~V~~ 108 (298)
T PF14054_consen 78 FEESSNNDGVYY--------SSNSFRGRPGRTYRLEVET 108 (298)
T ss_pred ecccCCCcceEE--------ecccccccCCCEEEEEEEE
Confidence 111111 1111 1235677899999999998
No 19
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=50.16 E-value=1.4e+02 Score=24.52 Aligned_cols=99 Identities=12% Similarity=0.065 Sum_probs=57.3
Q ss_pred CceEEEeccCCcceeeEEEEccCCCeEEEEEEEecCCCCCCCceEEEEEecC----ceeeEEEEecCCc-ceEEEEEEEE
Q 017355 260 GFSAIELVAGRESAIAQIIRTIPQKSYELTFIIGDAKNGCHGSMVVEAFAAD----KTIKVPYNSVGKG-GSKKASLKFQ 334 (373)
Q Consensus 260 G~~aVeL~~g~~~aI~Q~v~T~~G~~Y~LsFs~g~a~n~c~g~~~V~a~ag~----~~~~~~~~s~G~g-g~~~~~~~F~ 334 (373)
|.+.+-.....+...-..|.--.+..|+|++.+...... + .+++...+ ...++.+.++|.- .|+..+....
T Consensus 21 ~~~~~~~~~~G~~~~~~~Vd~~~~g~y~~~~~~a~~~~~--~--~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~ 96 (125)
T PF03422_consen 21 GGYVVGYIENGDWIEYNNVDVPEAGTYTLTIRYANGGGG--G--TIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVK 96 (125)
T ss_dssp TSEEEESSSTTTEEEEEEEEESSSEEEEEEEEEEESSSS--E--EEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEE
T ss_pred CceEEecccCCCEEEEEEEeeCCCceEEEEEEEECCCCC--c--EEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEe
Confidence 445555533333333345888899999999999655543 3 34444444 3567777655442 3666766665
Q ss_pred EccCeeEEEEEecccccccCCCCCccccceeeeEEe
Q 017355 335 ALTSRTRITFYSSNYHTKLNDYGHMCGPVLDDVSVL 370 (373)
Q Consensus 335 A~s~~T~l~F~S~~~~~~~d~~~~~cGpviDdV~v~ 370 (373)
..+-+=+|.|... .+ +. |.+=||-+.+.
T Consensus 97 l~~G~h~i~l~~~-----~~--~~-~~~niD~~~f~ 124 (125)
T PF03422_consen 97 LPAGKHTIYLVFN-----GG--DG-WAFNIDYFQFT 124 (125)
T ss_dssp EESEEEEEEEEES-----SS--SS-B-EEEEEEEEE
T ss_pred eCCCeeEEEEEEE-----CC--CC-ceEEeEEEEEE
Confidence 5555556666553 11 12 66788888764
No 20
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=49.00 E-value=1.7e+02 Score=32.47 Aligned_cols=108 Identities=24% Similarity=0.225 Sum_probs=59.7
Q ss_pred CCceEEEeccCCc--ceeeEEEEccCCCeEEEEEEEecCCCCCCCceEEE-E-EecCce-eeEEEE-------ecCC-cc
Q 017355 259 SGFSAIELVAGRE--SAIAQIIRTIPQKSYELTFIIGDAKNGCHGSMVVE-A-FAADKT-IKVPYN-------SVGK-GG 325 (373)
Q Consensus 259 ~G~~aVeL~~g~~--~aI~Q~v~T~~G~~Y~LsFs~g~a~n~c~g~~~V~-a-~ag~~~-~~~~~~-------s~G~-gg 325 (373)
+|+++.=--.|+. ..+.+.|+...+..=+|+|..-=.-...---+.|+ + ..|..+ ...+.+ ..++ ++
T Consensus 339 ~G~~~w~Sg~Gd~l~~tLt~~vdLp~~s~AtLsfk~wydIE~dyDy~~VevvStdGg~Twt~~~g~~~~~~~~~~~~sg~ 418 (645)
T PF05547_consen 339 SGSYAWYSGSGDDLNNTLTRSVDLPAASSATLSFKAWYDIEADYDYAYVEVVSTDGGKTWTPLPGNTTGNGNPNGGSSGG 418 (645)
T ss_pred CCceEEEECCCcchhhheeeeeccCCCCCeEEEeehheecccCCceEEEEEEEcCCCceeEecCccccccCCCCCCCccc
Confidence 5655544333332 45777777666666678886411111111234556 2 223222 122221 1222 57
Q ss_pred eEEEEEEEEEccCee-EEEEEecccccccCCCCCccccceeeeEEee
Q 017355 326 SKKASLKFQALTSRT-RITFYSSNYHTKLNDYGHMCGPVLDDVSVLP 371 (373)
Q Consensus 326 ~~~~~~~F~A~s~~T-~l~F~S~~~~~~~d~~~~~cGpviDdV~v~~ 371 (373)
|+..+++..|=+-++ +|.|- |. .|..-..-|-+||||+|.+
T Consensus 419 Wv~~~~DLSayAGqtV~LrFr---Y~--TD~~v~~~G~~vDdi~v~~ 460 (645)
T PF05547_consen 419 WVDASFDLSAYAGQTVQLRFR---YV--TDGGVAGRGFYVDDIRVTA 460 (645)
T ss_pred eeEeEeccccccCCeEEEEEE---EE--cCCCccCCcEEEEEEEEEE
Confidence 999999999966655 78882 33 3533456689999999973
No 21
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=48.33 E-value=1.6e+02 Score=24.34 Aligned_cols=98 Identities=17% Similarity=0.160 Sum_probs=53.8
Q ss_pred CCeEEEcCCC-cee-eEEEEeeCCCEEEEEEEeCCCCCCCceEEEEEcCCcceeeEEeeee-cCCcce---EEEEEEEcC
Q 017355 90 GVHAVRLGNE-ASI-SQNVRVKRGSIYSLTFGTTRTCAQDEVLRVSVPGQSGDLSVQTLFS-SNGGDT---YAWAFNATS 163 (373)
Q Consensus 90 G~~AVeLG~e-~~I-~Q~~~t~~G~~Y~LTFs~ar~ca~~~~l~Vsv~~~~~~~~~~t~y~-s~Gw~~---~s~~F~A~~ 163 (373)
|.+.+....+ +.| ...+....+..|.|++.++..-.. -.+++.+++..+..--++... ..+|+. .+.......
T Consensus 21 ~~~~~~~~~~G~~~~~~~Vd~~~~g~y~~~~~~a~~~~~-~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l~~ 99 (125)
T PF03422_consen 21 GGYVVGYIENGDWIEYNNVDVPEAGTYTLTIRYANGGGG-GTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVKLPA 99 (125)
T ss_dssp TSEEEESSSTTTEEEEEEEEESSSEEEEEEEEEEESSSS-EEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEEEES
T ss_pred CceEEecccCCCEEEEEEEeeCCCceEEEEEEEECCCCC-cEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEeeCC
Confidence 5566666222 223 234888899999999998653222 678999988333221122222 334665 333344443
Q ss_pred ceEEEEEEcCCCCCCCCCCccccceeee
Q 017355 164 DVVKVTFHNPGIQEDPTCGPLLDAVAIK 191 (373)
Q Consensus 164 ~~t~L~F~s~g~~~~~~CGPvID~V~v~ 191 (373)
-.=+|.|...+-. .|.+=||.+.+.
T Consensus 100 G~h~i~l~~~~~~---~~~~niD~~~f~ 124 (125)
T PF03422_consen 100 GKHTIYLVFNGGD---GWAFNIDYFQFT 124 (125)
T ss_dssp EEEEEEEEESSSS---SB-EEEEEEEEE
T ss_pred CeeEEEEEEECCC---CceEEeEEEEEE
Confidence 3345555553321 167788888764
No 22
>PF11182 AlgF: Alginate O-acetyl transferase AlgF
Probab=46.91 E-value=47 Score=31.11 Aligned_cols=35 Identities=29% Similarity=0.593 Sum_probs=26.4
Q ss_pred eeecCCCCeEEEcCCCceeeEEEEeeCCCEEEEEEEeC
Q 017355 84 YFAVPRGVHAVRLGNEASISQNVRVKRGSIYSLTFGTT 121 (373)
Q Consensus 84 ~~~vP~G~~AVeLG~e~~I~Q~~~t~~G~~Y~LTFs~a 121 (373)
++.+|.|.+.+..|+.. ..+.+.+|.+|+|-....
T Consensus 62 ~~~~~~G~~~~~~ggk~---~~~~v~~~~f~TvV~~~~ 96 (181)
T PF11182_consen 62 YFFVPPGGYTLQVGGKQ---AEVDVAPGEFYTVVLRPG 96 (181)
T ss_pred eeecCCCceeEeecCcc---cceEecCCceEEEEEcCC
Confidence 47888899998885432 256779999999987753
No 23
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=44.15 E-value=74 Score=28.48 Aligned_cols=65 Identities=23% Similarity=0.314 Sum_probs=42.3
Q ss_pred ceecCCCccCcCCCCCCcEEeeccceEE-----eccCCcc--cCCCceEEEeccCCcceeeEEEEccCCCeEEEEEEEec
Q 017355 222 GVLLPPKQEDLISPLPGWIIESLKPVKY-----IDKKHFF--VPSGFSAIELVAGRESAIAQIIRTIPQKSYELTFIIGD 294 (373)
Q Consensus 222 gvl~~~~~~~~~s~L~GWtv~s~~~V~y-----Ids~~~~--vp~G~~aVeL~~g~~~aI~Q~v~T~~G~~Y~LsFs~g~ 294 (373)
|||.+|. .-|++|=+|. +|+.+- .+.--.. -..|.+++|+--| .|+++.....
T Consensus 7 GvL~dg~----G~pv~g~~I~-L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~~epG---------------~Y~V~l~~~g 66 (134)
T PF08400_consen 7 GVLKDGA----GKPVPGCTIT-LKARRTSSTVVVGTVASVVTGEAGEYSFDVEPG---------------VYRVTLKVEG 66 (134)
T ss_pred EEEeCCC----CCcCCCCEEE-EEEccCchheEEEEEEEEEcCCCceEEEEecCC---------------eEEEEEEECC
Confidence 7777655 4588999998 677551 0111111 1267777777333 6999999987
Q ss_pred CCCCCCCceEEE
Q 017355 295 AKNGCHGSMVVE 306 (373)
Q Consensus 295 a~n~c~g~~~V~ 306 (373)
..-.|.|.+.|.
T Consensus 67 ~~~~~vG~I~V~ 78 (134)
T PF08400_consen 67 RPPVYVGDITVY 78 (134)
T ss_pred CCceeEEEEEEe
Confidence 776777877775
No 24
>PRK00022 lolB outer membrane lipoprotein LolB; Provisional
Probab=43.10 E-value=62 Score=29.87 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=15.1
Q ss_pred CCCCCCcEEeeeEEEEeCCC
Q 017355 59 KYSLPKWETSGLVEYISGGP 78 (373)
Q Consensus 59 ~s~IpgW~i~G~VeyI~sg~ 78 (373)
-..|..|+++|.+-|...++
T Consensus 42 l~~l~~w~~~Gria~~~~~~ 61 (202)
T PRK00022 42 LQQITQYQTRGRFAYISPQQ 61 (202)
T ss_pred HhhhhceEEEEEEEEECCCc
Confidence 36789999999887775443
No 25
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=42.75 E-value=70 Score=24.17 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=29.2
Q ss_pred ecCCCCeEEEc--CCCceeeEEEEeeCCCEEEEEEEeC
Q 017355 86 AVPRGVHAVRL--GNEASISQNVRVKRGSIYSLTFGTT 121 (373)
Q Consensus 86 ~vP~G~~AVeL--G~e~~I~Q~~~t~~G~~Y~LTFs~a 121 (373)
.+|.|.|.|++ ..--...+++.+.+|+...|.+.+-
T Consensus 31 ~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~ 68 (71)
T PF08308_consen 31 DLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLE 68 (71)
T ss_pred ecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEE
Confidence 38899999999 2234567899999999999998874
No 26
>TIGR00548 lolB outer membrane lipoprotein LolB. This protein, LolB, is known so far only in the gamma and beta subdivisions of the Proteobacteria. It is a processed, lipid-modified outer membrane protein. It is required in E. coli for insertion of the major outer lipoprotein (Lpp) into the outer membrane. Lpp is transferred to LolB from the carrier protein LolA in the periplasm. Previously, this protein was thought to play in role in 5-aminolevulinic acid synthesis and was designated HemM.
Probab=42.49 E-value=66 Score=30.00 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=13.2
Q ss_pred CCCCCcEEeeeEEEEeCC
Q 017355 60 YSLPKWETSGLVEYISGG 77 (373)
Q Consensus 60 s~IpgW~i~G~VeyI~sg 77 (373)
..|..|.++|.+-|+...
T Consensus 43 ~~~~~w~~~Gria~~~~~ 60 (202)
T TIGR00548 43 SELDAYQIDGKVGYISPR 60 (202)
T ss_pred hhhhccEeeeeEEEECCC
Confidence 458889998877776543
No 27
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=40.50 E-value=1.6e+02 Score=22.23 Aligned_cols=37 Identities=8% Similarity=0.212 Sum_probs=26.0
Q ss_pred cCCCceEEEeccCCcceeeEEEEccCCCeEEEEEEEe
Q 017355 257 VPSGFSAIELVAGRESAIAQIIRTIPQKSYELTFIIG 293 (373)
Q Consensus 257 vp~G~~aVeL~~g~~~aI~Q~v~T~~G~~Y~LsFs~g 293 (373)
+|.|.+.|++-...--...++|...+|+..+|.+.|-
T Consensus 32 l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~ 68 (71)
T PF08308_consen 32 LPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLE 68 (71)
T ss_pred cCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEE
Confidence 6677788877444444566777777888888887763
No 28
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=37.74 E-value=56 Score=27.24 Aligned_cols=37 Identities=24% Similarity=0.473 Sum_probs=29.5
Q ss_pred ceeecCCCCeEEEc---CCCc-----eeeEEEEeeCCCEEEEEEE
Q 017355 83 FYFAVPRGVHAVRL---GNEA-----SISQNVRVKRGSIYSLTFG 119 (373)
Q Consensus 83 m~~~vP~G~~AVeL---G~e~-----~I~Q~~~t~~G~~Y~LTFs 119 (373)
.+..+|.|.|-+++ |... -++.++...+|+.|+|--.
T Consensus 36 ~Y~~v~~G~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~ 80 (122)
T PF14344_consen 36 DYLPVPPGTYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAV 80 (122)
T ss_pred CceEECCceEEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEE
Confidence 36899999999999 5542 3467889999999998655
No 29
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=34.68 E-value=2.4e+02 Score=22.58 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=39.5
Q ss_pred EccCCCeEEEEEEEecCCCCCCCceEEEEEecCceeeEEEEecCC--cceEEEEEEEEEccCeeEEEEEec
Q 017355 279 RTIPQKSYELTFIIGDAKNGCHGSMVVEAFAADKTIKVPYNSVGK--GGSKKASLKFQALTSRTRITFYSS 347 (373)
Q Consensus 279 ~T~~G~~Y~LsFs~g~a~n~c~g~~~V~a~ag~~~~~~~~~s~G~--gg~~~~~~~F~A~s~~T~l~F~S~ 347 (373)
...+|..|++ ..+.+..+.....|....-.....+.+...+. +.-...+++|.+....|+|.+.-.
T Consensus 29 ~~~~Gg~~~~---~~~~g~~~~~~~~v~~~~p~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~T~l~~~~~ 96 (124)
T PF08327_consen 29 DFRPGGSFRF---MDPDGGEFGFDGTVLEVEPPERIVFTWRMPDDPDGPESRVTFEFEEEGGGTRLTLTHS 96 (124)
T ss_dssp ECSTTEEEEE---EETTSEEEEEEEEEEEEETTTEEEEEEEEETSSSCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred eeecCCEEEE---EecCCCCceeeEEEEEEeCCEEEEEEEEccCCCCCCceEEEEEEEEcCCcEEEEEEEE
Confidence 3356777766 22333333334445544555555555543322 346788899999999999999653
No 30
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=31.90 E-value=3.1e+02 Score=23.06 Aligned_cols=65 Identities=11% Similarity=0.165 Sum_probs=35.4
Q ss_pred ccCCCeEEEEEEEecCCCCCCCceEEEEEecCceeeEEEEecCCcceEEEEEEEEEccCeeEEEEEec
Q 017355 280 TIPQKSYELTFIIGDAKNGCHGSMVVEAFAADKTIKVPYNSVGKGGSKKASLKFQALTSRTRITFYSS 347 (373)
Q Consensus 280 T~~G~~Y~LsFs~g~a~n~c~g~~~V~a~ag~~~~~~~~~s~G~gg~~~~~~~F~A~s~~T~l~F~S~ 347 (373)
-.+|..|++.+.- ..+........|....-. ..+.|+-...+.-.+.+++|.+....|+|++.-.
T Consensus 43 ~~~GG~~~~~~~~-~~g~~~~~~g~v~e~~p~--~~l~~t~~~~~~~~~v~~~~~~~~~gT~ltl~~~ 107 (139)
T cd08894 43 LRPGGRWRFVMHG-PDGTDYPNRIVFLEIEPP--ERIVYDHGSGPPRFRLTVTFEEQGGKTRLTWRQV 107 (139)
T ss_pred ecCCCEEEEEEEC-CCCCEecceEEEEEEcCC--CEEEEEeccCCCcEEEEEEEEECCCCEEEEEEEE
Confidence 3467777776642 111112222334333333 3444432222334567899999999999998754
No 31
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=31.23 E-value=38 Score=28.40 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHhhhccccccC
Q 017355 3 WFLSLCFALIFSSLGNGGSATI 24 (373)
Q Consensus 3 ~~~~~~~~~~~~~~~~~a~~~l 24 (373)
+||-|++++++|+.+.++.+++
T Consensus 7 llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 7 LLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHHHHHHHHHhhhhhHHh
Confidence 5566666666666666666654
No 32
>KOG4509 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.26 E-value=39 Score=32.08 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=19.5
Q ss_pred CCCcEEeeccceEEeccCCcccCCCceEE
Q 017355 236 LPGWIIESLKPVKYIDKKHFFVPSGFSAI 264 (373)
Q Consensus 236 L~GWtv~s~~~V~yIds~~~~vp~G~~aV 264 (373)
=.||||-++++.+| |..|+|+.++
T Consensus 202 dNGWmiK~GRGLDY-----FK~p~~kfsL 225 (247)
T KOG4509|consen 202 DNGWMIKIGRGLDY-----FKAPDGKFSL 225 (247)
T ss_pred cCceEEEecCcccc-----ccCCCCceee
Confidence 47999988899998 5667888765
No 33
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=29.14 E-value=81 Score=26.26 Aligned_cols=46 Identities=30% Similarity=0.371 Sum_probs=31.1
Q ss_pred ceEEec-cCCcccCCCceEEEe-ccCCcc-----eeeEEEEccCCCeEEEEEE
Q 017355 246 PVKYID-KKHFFVPSGFSAIEL-VAGRES-----AIAQIIRTIPQKSYELTFI 291 (373)
Q Consensus 246 ~V~yId-s~~~~vp~G~~aVeL-~~g~~~-----aI~Q~v~T~~G~~Y~LsFs 291 (373)
.|.|=+ +.+..+|.|.+.|++ .+|... .+...+...+|+.|+|--.
T Consensus 28 ~v~y~~~s~Y~~v~~G~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~ 80 (122)
T PF14344_consen 28 NVAYGQASDYLPVPPGTYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAV 80 (122)
T ss_pred cCCCCcccCceEECCceEEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEE
Confidence 444442 335678999999999 344442 3456778889999998544
No 34
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=27.84 E-value=1.5e+02 Score=24.88 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=28.4
Q ss_pred eeecCCCCeEEEcC-CCceeeEEE-----EeeCCCEEEEEEEeC
Q 017355 84 YFAVPRGVHAVRLG-NEASISQNV-----RVKRGSIYSLTFGTT 121 (373)
Q Consensus 84 ~~~vP~G~~AVeLG-~e~~I~Q~~-----~t~~G~~Y~LTFs~a 121 (373)
+|..-+|.-+++|| -....++.+ ..++|+.|.+.|-.+
T Consensus 30 vWVFIn~kLv~DlGG~H~~~~~sV~l~~lgl~~g~~Y~~d~F~~ 73 (90)
T TIGR02148 30 VWVFINNKLVVDIGGQHPAVPGAVDLDTLGLKEGKTYPFDIFYC 73 (90)
T ss_pred EEEEECCEEEEEccCcCCCcccEEEhhhcCCccCcEeeEEEEEE
Confidence 58888999999994 333444444 468999999999764
No 35
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=27.61 E-value=46 Score=23.40 Aligned_cols=8 Identities=25% Similarity=0.576 Sum_probs=6.5
Q ss_pred CCcccCCC
Q 017355 34 DTLLPNGN 41 (373)
Q Consensus 34 ~nLl~NG~ 41 (373)
.+.+.||+
T Consensus 24 G~ViING~ 31 (36)
T PF08194_consen 24 GNVIINGK 31 (36)
T ss_pred CeEEECce
Confidence 68888986
No 36
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=25.89 E-value=4.1e+02 Score=22.52 Aligned_cols=70 Identities=10% Similarity=0.016 Sum_probs=36.3
Q ss_pred EEEccCCCeEEEEEEEecCCCCCCCceEEEEEecCceeeEEEEec-C---Cc-ceEEEEEEEEEccCeeEEEEEec
Q 017355 277 IIRTIPQKSYELTFIIGDAKNGCHGSMVVEAFAADKTIKVPYNSV-G---KG-GSKKASLKFQALTSRTRITFYSS 347 (373)
Q Consensus 277 ~v~T~~G~~Y~LsFs~g~a~n~c~g~~~V~a~ag~~~~~~~~~s~-G---~g-g~~~~~~~F~A~s~~T~l~F~S~ 347 (373)
.++-.+|..|++.+.- +.+..+.....|....-.....+++... + .. ...+.+++|++..+.|+|+....
T Consensus 40 ~~d~~~GG~~~~~~~~-~~g~~~~~~g~v~~i~p~~~l~~t~~~~~~~~~~~~~~~~v~~~~~~~~~gT~Ltl~~~ 114 (146)
T cd08896 40 ELDLRPGGAFRTVMRG-PDGEEFPNPGCFLEVVPGERLVFTDALTPGWRPAEKPFMTAIITFEDEGGGTRYTARAR 114 (146)
T ss_pred EEEeecCcEEEEEEEC-CCCCEecceEEEEEEeCCCEEEEEEeecCCcCCCCCCcEEEEEEEEecCCcEEEEEEEE
Confidence 3445677777776642 1122222223343333333333332211 1 01 12567899999999999997543
No 37
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=25.02 E-value=3.2e+02 Score=21.02 Aligned_cols=57 Identities=11% Similarity=0.248 Sum_probs=39.9
Q ss_pred ccCCCeEEEEEEEecCCCCCCCceEEEEEecCceeeEEE-EecCCcceEEEEEEEEEc
Q 017355 280 TIPQKSYELTFIIGDAKNGCHGSMVVEAFAADKTIKVPY-NSVGKGGSKKASLKFQAL 336 (373)
Q Consensus 280 T~~G~~Y~LsFs~g~a~n~c~g~~~V~a~ag~~~~~~~~-~s~G~gg~~~~~~~F~A~ 336 (373)
..+|..+++++.+-..|....+...|+++..+....-.+ .+-..|.....++.+++.
T Consensus 15 ~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 15 VVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp EETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEEEESEB-TTEEEEEEEEEE-S
T ss_pred ccCCCEEEEEEEEEECCCCCCCCEEEEEEECCceeccEEECCcCCCcEEEEEEEEEeC
Confidence 468999999999999888878889999888877653322 233445677777877774
No 38
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=24.86 E-value=3.9e+02 Score=23.18 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=35.4
Q ss_pred cCCCeEEEEEEEecCCCCCCCceEEEEEecCceeeEEEEecCCcceEEEEEEEEEccCeeEEEEEec
Q 017355 281 IPQKSYELTFIIGDAKNGCHGSMVVEAFAADKTIKVPYNSVGKGGSKKASLKFQALTSRTRITFYSS 347 (373)
Q Consensus 281 ~~G~~Y~LsFs~g~a~n~c~g~~~V~a~ag~~~~~~~~~s~G~gg~~~~~~~F~A~s~~T~l~F~S~ 347 (373)
.+|..|+..+.- . ..-...+.|. .-.....+.|...+.+.-....++|.+....|+|.+.-.
T Consensus 48 ~~G~~~~~~~~~--~-~~~~~~~~v~--e~~p~~~l~~~~~~~~~~~~~~~~l~~~~~gT~v~~~~~ 109 (157)
T cd08899 48 RVGGRVEFVMDD--E-EGPNATGTIL--ACEPPRLLAFTWGEGGGESEVRFELAPEGDGTRLTLTHR 109 (157)
T ss_pred ccCceEEEEecC--C-CCCccceEEE--EEcCCcEEEEEecCCCCCceEEEEEEEcCCCEEEEEEEe
Confidence 467777666542 1 1111123333 233345566655544344567888999999999998654
No 39
>PF07675 Cleaved_Adhesin: Cleaved Adhesin Domain; InterPro: IPR011628 This conserved region is found in a group of haemagglutinins and peptidases, e.g. IPR001769 from INTERPRO, that, in Porphyromonas gingivalis (Bacteroides gingivalis), form components of the major extracellular virulence complex RgpA-Kgp - a mixture of proteinases and adhesins []. These domains are cleaved from the original polyprotein and form part of the adhesins [].; PDB: 3KM5_B 3M1H_A.
Probab=24.70 E-value=2.5e+02 Score=25.20 Aligned_cols=132 Identities=16% Similarity=0.148 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCCCCceEEecCCCCCCcEEeeeEEEEeCCCCCCCceeecCCCCeEEE----------c-CCCceeeEEEE
Q 017355 39 NGNFELSPKKSNLNKTVIIGKYSLPKWETSGLVEYISGGPQPGGFYFAVPRGVHAVR----------L-GNEASISQNVR 107 (373)
Q Consensus 39 NG~FE~gP~~~~~~~~~l~~~s~IpgW~i~G~VeyI~sg~~~g~m~~~vP~G~~AVe----------L-G~e~~I~Q~~~ 107 (373)
+=+||.+..+ ..++++.....--.|..... .. .. +..-.|.+++- + -++-=|+..|
T Consensus 4 ~E~Fe~~~~p--~gWTiiDadgdg~~W~~~~~------~~--~~--~~~~~g~~~~~S~s~~~~~~~~~~DnWLISP~l- 70 (167)
T PF07675_consen 4 SEDFENGTIP--AGWTIIDADGDGQTWKFYTN------SF--TS--LTPHSGDKAAASFSYNGGSGTLTADNWLISPQL- 70 (167)
T ss_dssp CCTSTTTSS---TTSEEEETT-SS--SECCET------TT--TT----BTTCSEEEEEESECTTCEE---EEEEE-S---
T ss_pred eccCCCCcCc--CCcEEEEcCCCCcccccccc------cc--cc--cccccCCeEEEEEeeccccCccCCCceEEecCc-
Confidence 4578876432 35677765555567765221 00 00 12223433322 1 1223344445
Q ss_pred eeCCCEEEEEEEeCC-CC-CCCceEEEEEcCC---cceeeE---Ee-eeec------------CCcceEEEEEEEcCceE
Q 017355 108 VKRGSIYSLTFGTTR-TC-AQDEVLRVSVPGQ---SGDLSV---QT-LFSS------------NGGDTYAWAFNATSDVV 166 (373)
Q Consensus 108 t~~G~~Y~LTFs~ar-~c-a~~~~l~Vsv~~~---~~~~~~---~t-~y~s------------~Gw~~~s~~F~A~~~~t 166 (373)
+|. .+|+|.+.. .+ ...|..+|.+... ..+|.. .+ .... .-|..+...+.+-..
T Consensus 71 --~g~-~~i~f~v~~~~~~~~~E~y~V~~Sttg~~~~~f~~i~e~t~~~~~~~~~~~~~~~~~~~w~~~~v~Lp~gt~-- 145 (167)
T PF07675_consen 71 --SGA-QTISFWVKSQDASYGPEHYEVLYSTTGNNIADFTTILEETITANTFTNAEKIEGKTQGEWTERTVDLPAGTK-- 145 (167)
T ss_dssp --TT--EEEEEEEEECTTTC---EEEEEEESS-SSGGGEEECEEEE---SS-SSSSSSSSS-----EEEEEEE-TT----
T ss_pred --CCC-CEEEEEEEeccCCCCCceEEEEEecCCCChhheEEeeeeeecccccccccccccccCccEEEEEEeCCCCCc--
Confidence 674 699999832 21 2467777777642 223331 01 1111 139999999865544
Q ss_pred EEEEEcCCCCCCCCCCccccceee
Q 017355 167 KVTFHNPGIQEDPTCGPLLDAVAI 190 (373)
Q Consensus 167 ~L~F~s~g~~~~~~CGPvID~V~v 190 (373)
.+.||..... | ...=+||||.|
T Consensus 146 Y~afrh~~~t-d-~~~l~iDDV~v 167 (167)
T PF07675_consen 146 YFAFRHYNST-D-AFYLMIDDVTV 167 (167)
T ss_dssp EEEEEEES---S-S-EEEEEEEEE
T ss_pred EEEEEeccCC-C-ceEEEeccEEC
Confidence 8999752222 2 34678999986
No 40
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=23.93 E-value=2.2e+02 Score=23.95 Aligned_cols=41 Identities=10% Similarity=0.271 Sum_probs=28.5
Q ss_pred cccCCCceEEEeccCCcceeeEEEE-----ccCCCeEEEEEEEecCC
Q 017355 255 FFVPSGFSAIELVAGRESAIAQIIR-----TIPQKSYELTFIIGDAK 296 (373)
Q Consensus 255 ~~vp~G~~aVeL~~g~~~aI~Q~v~-----T~~G~~Y~LsFs~g~a~ 296 (373)
|..=+|+-+||| +|.-++.++.|. .++|+.|.+.|-...+.
T Consensus 31 WVFIn~kLv~Dl-GG~H~~~~~sV~l~~lgl~~g~~Y~~d~F~~ERh 76 (90)
T TIGR02148 31 WVFINNKLVVDI-GGQHPAVPGAVDLDTLGLKEGKTYPFDIFYCERH 76 (90)
T ss_pred EEEECCEEEEEc-cCcCCCcccEEEhhhcCCccCcEeeEEEEEEeec
Confidence 333367789998 555455566554 47999999999885554
No 41
>PRK02710 plastocyanin; Provisional
Probab=23.87 E-value=2.3e+02 Score=23.99 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=11.9
Q ss_pred EeeCCCEEEEEEEe
Q 017355 107 RVKRGSIYSLTFGT 120 (373)
Q Consensus 107 ~t~~G~~Y~LTFs~ 120 (373)
...+|..|+++|..
T Consensus 83 ~~~pg~t~~~tF~~ 96 (119)
T PRK02710 83 AFAPGESWEETFSE 96 (119)
T ss_pred ccCCCCEEEEEecC
Confidence 45799999999996
No 42
>PRK15252 putative fimbrial-like adhesin protein StcD; Provisional
Probab=23.50 E-value=5e+02 Score=26.83 Aligned_cols=92 Identities=18% Similarity=0.194 Sum_probs=50.3
Q ss_pred CcCCcccCCCCCCCCCCCCCCceEEecCCCCCCcE--EeeeEEEEeCCCCCCCceeecCCCCeEEEcCCCceeeEE--EE
Q 017355 32 WLDTLLPNGNFELSPKKSNLNKTVIIGKYSLPKWE--TSGLVEYISGGPQPGGFYFAVPRGVHAVRLGNEASISQN--VR 107 (373)
Q Consensus 32 ~~~nLl~NG~FE~gP~~~~~~~~~l~~~s~IpgW~--i~G~VeyI~sg~~~g~m~~~vP~G~~AVeLG~e~~I~Q~--~~ 107 (373)
..++++...+|-..+-.+ +..- +.-+|=. ..+. | +..++.+.++..+.|++-|+|--+....+. ++
T Consensus 28 ~~~~~i~~~~l~~~~~~s---~~~~---~~f~gt~Cs~~~~---v-t~~~~~~~ivGf~~~k~~l~~~it~~~~n~i~l~ 97 (344)
T PRK15252 28 VQHNLVVQGDFALNQTQS---ATYE---HNFNDSSCVSTNT---I-TPMSPSDIIVGLYNDTIKLNLHFEWTNKNNITLS 97 (344)
T ss_pred cccCceeecccccCCcce---eEEE---eeccCCcccCCCc---c-CCCCCccEEEEecCCeEEEEEEEEecCCCceecc
Confidence 456788888887644221 1111 1111111 1122 2 445667788899999999999222111222 21
Q ss_pred eeCC---CEEEEEEEeCCCCCCCceEEEEEcC
Q 017355 108 VKRG---SIYSLTFGTTRTCAQDEVLRVSVPG 136 (373)
Q Consensus 108 t~~G---~~Y~LTFs~ar~ca~~~~l~Vsv~~ 136 (373)
-..| ..|+|+|..... .+.++|++++
T Consensus 98 n~~g~~~a~ytv~~t~~~s---~~~v~vsa~~ 126 (344)
T PRK15252 98 NNQTSFTSGYSVTVTPAAS---NAKVNVSAGS 126 (344)
T ss_pred CCCceEecceEEEEEEccC---CccEEEecCC
Confidence 1112 279999998543 2378888765
No 43
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=21.66 E-value=3.2e+02 Score=26.22 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.4
Q ss_pred CCCCCCcEEeeeEEEEeCCC
Q 017355 59 KYSLPKWETSGLVEYISGGP 78 (373)
Q Consensus 59 ~s~IpgW~i~G~VeyI~sg~ 78 (373)
-..|+.|...|.+-||.-.+
T Consensus 46 l~~i~~yq~~G~~~yis~~q 65 (206)
T COG3017 46 LQEIQSYQARGRLAYISDQQ 65 (206)
T ss_pred HHhhhhheecceEEEEcCCC
Confidence 35799999999999997543
No 44
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=20.83 E-value=4.8e+02 Score=24.51 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=13.2
Q ss_pred EccCCCeEEEEEEEe
Q 017355 279 RTIPQKSYELTFIIG 293 (373)
Q Consensus 279 ~T~~G~~Y~LsFs~g 293 (373)
...+|..|+|+|++.
T Consensus 191 ~v~~~~~y~lt~~~~ 205 (235)
T PF14900_consen 191 NVKAGDHYKLTFDPS 205 (235)
T ss_pred cccCceEEEEEEeec
Confidence 456999999999997
Done!