Query 017356
Match_columns 373
No_of_seqs 285 out of 773
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 13:05:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.6 3.8E-16 1.3E-20 120.3 4.9 54 222-278 7-60 (63)
2 1gnf_A Transcription factor GA 99.6 3.9E-16 1.3E-20 113.3 4.4 43 222-267 4-46 (46)
3 2vut_I AREA, nitrogen regulato 99.6 4.2E-16 1.4E-20 111.7 3.8 41 223-266 2-42 (43)
4 4gat_A Nitrogen regulatory pro 99.6 1.2E-15 4.1E-20 118.5 4.4 52 222-276 9-60 (66)
5 2kae_A GATA-type transcription 99.4 4.9E-14 1.7E-18 110.9 3.0 45 222-268 8-52 (71)
6 4hc9_A Trans-acting T-cell-spe 99.4 2.8E-13 9.6E-18 115.2 4.5 52 223-277 60-111 (115)
7 4hc9_A Trans-acting T-cell-spe 99.2 1.3E-11 4.4E-16 104.9 5.4 47 222-271 5-51 (115)
8 3ogk_Q JAZ1 incomplete degron 94.7 0.01 3.5E-07 36.8 1.3 19 153-171 1-19 (22)
9 3ogl_Q JAZ1 incomplete degron 94.1 0.023 7.8E-07 34.9 1.9 18 151-168 4-21 (21)
10 2pk2_A Cyclin-T1, protein TAT; 46.5 4.2 0.00014 39.7 0.0 9 222-230 314-322 (358)
11 2ds5_A CLPX, ATP-dependent CLP 37.0 18 0.0006 26.3 2.1 31 223-255 12-42 (51)
12 1ovx_A ATP-dependent CLP prote 36.8 17 0.00058 28.0 2.1 32 223-256 19-50 (67)
13 2yrk_A Zinc finger homeobox pr 36.3 2.8 9.7E-05 31.2 -2.3 7 224-230 15-21 (55)
14 1pft_A TFIIB, PFTFIIBN; N-term 34.3 5.3 0.00018 28.1 -1.1 32 223-259 6-37 (50)
15 1dl6_A Transcription factor II 34.2 11 0.00038 27.7 0.6 32 223-259 12-43 (58)
16 2j9u_B VPS36, vacuolar protein 31.8 8.2 0.00028 30.5 -0.4 34 221-255 16-49 (76)
17 2ctu_A Zinc finger protein 483 30.3 17 0.00057 25.1 1.0 40 222-264 18-57 (73)
18 2owa_A Arfgap-like finger doma 28.1 40 0.0014 29.0 3.2 37 222-262 36-72 (138)
19 2iqj_A Stromal membrane-associ 25.4 44 0.0015 28.5 3.0 37 222-262 27-63 (134)
20 3cw2_K Translation initiation 25.3 24 0.00083 30.4 1.3 31 223-256 104-134 (139)
21 2crw_A ARF GAP 3, ADP-ribosyla 24.6 46 0.0016 29.0 3.0 37 222-262 29-65 (149)
22 2lvu_A Zinc finger and BTB dom 29.6 17 0.00057 20.0 0.0 17 247-263 3-19 (26)
23 2crr_A Stromal membrane-associ 22.5 66 0.0023 27.6 3.6 37 222-262 29-65 (141)
24 2yrc_A Protein transport prote 22.5 21 0.00071 26.5 0.3 32 222-255 9-42 (59)
25 3cng_A Nudix hydrolase; struct 22.2 26 0.00088 29.9 0.9 31 222-254 3-33 (189)
26 3sub_A ADP-ribosylation factor 21.7 62 0.0021 28.8 3.3 36 222-261 22-57 (163)
27 1pcx_A Protein transport prote 21.6 23 0.00078 38.3 0.5 32 222-255 112-143 (810)
28 2olm_A Nucleoporin-like protei 21.3 57 0.002 28.0 2.9 36 222-261 25-60 (140)
29 1w7p_D VPS36P, YLR417W; ESCRT- 21.3 20 0.00068 37.6 0.0 37 220-257 115-151 (566)
30 1m2v_B SEC24, protein transpor 21.1 24 0.00081 39.0 0.5 32 222-255 228-259 (926)
31 1nee_A EIF-2-beta, probable tr 20.3 25 0.00087 30.3 0.5 29 223-254 103-131 (138)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.61 E-value=3.8e-16 Score=120.28 Aligned_cols=54 Identities=26% Similarity=0.529 Sum_probs=45.9
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCCCCCCCCcCCCC
Q 017356 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLSMDQLE 278 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~~sk~~~~~~~~~~~ 278 (373)
...|.+|+++ .||+||+||+|+ +|||||||+|++++..|+++..+..+..+...
T Consensus 7 ~~~C~~C~tt--~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk 60 (63)
T 3dfx_A 7 GTSCANCQTT--TTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRNRK 60 (63)
T ss_dssp TCCCTTTCCS--CCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC--
T ss_pred CCcCCCcCCC--CCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCccccccCC
Confidence 4679999994 699999999997 99999999999999999998877666655543
No 2
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.60 E-value=3.9e-16 Score=113.34 Aligned_cols=43 Identities=44% Similarity=0.852 Sum_probs=39.4
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCC
Q 017356 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSK 267 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~~sk 267 (373)
...|++|+++ .||+||+||.|+ +|||||||+|++++++|+++|
T Consensus 4 ~~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~ 46 (46)
T 1gnf_A 4 ARECVNCGAT--ATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR 46 (46)
T ss_dssp SCCCTTTCCC--CCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred CCCCCCcCCC--CCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence 3579999994 699999999996 999999999999999999875
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.59 E-value=4.2e-16 Score=111.72 Aligned_cols=41 Identities=46% Similarity=0.911 Sum_probs=38.0
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCC
Q 017356 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLS 266 (373)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~~s 266 (373)
..|++|++ +.||+||+||+|+ +|||||||+|++++++|+++
T Consensus 2 ~~C~~C~t--t~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~ 42 (43)
T 2vut_I 2 TTCTNCFT--QTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLS 42 (43)
T ss_dssp CCCSSSCC--CCCSCCEECTTSC-EECHHHHHHHHHHSSCCCCC
T ss_pred CcCCccCC--CCCCccccCCCCC-cccHHHHHHHHHhCCCCCCC
Confidence 47999999 4799999999997 99999999999999999975
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.57 E-value=1.2e-15 Score=118.47 Aligned_cols=52 Identities=37% Similarity=0.680 Sum_probs=44.9
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCCCCCCCCcCC
Q 017356 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLSMDQ 276 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~~sk~~~~~~~~~ 276 (373)
...|++|+++ .||+||+||.|. +|||||||+|++++++|++++....|..+.
T Consensus 9 ~~~C~~C~t~--~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~ 60 (66)
T 4gat_A 9 PTTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKRN 60 (66)
T ss_dssp SCCCTTTCCC--CCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCCC
T ss_pred CCCCCCCCCC--CCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhccccccccc
Confidence 4579999994 699999999996 999999999999999999988765554443
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.42 E-value=4.9e-14 Score=110.85 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=38.2
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCCC
Q 017356 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKG 268 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~~sk~ 268 (373)
...|+||+++ .||+||+||.+..+|||||||+|+++++.|+++..
T Consensus 8 ~~~C~nC~tt--~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~ 52 (71)
T 2kae_A 8 SFQCSNCSVT--ETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAV 52 (71)
T ss_dssp CCCCSSSCCS--CCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHH
T ss_pred CCcCCccCCC--CCCccccCCCCCCccchHHHHHHHHhCCCCCcccc
Confidence 4689999995 69999995444449999999999999999997664
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.36 E-value=2.8e-13 Score=115.17 Aligned_cols=52 Identities=27% Similarity=0.565 Sum_probs=45.7
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCCCCCCCCcCCC
Q 017356 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLSMDQL 277 (373)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~~sk~~~~~~~~~~ 277 (373)
..|++|+++ .||+||+||+| ++|||||||||++++..|+++..+..|..+..
T Consensus 60 ~~C~~C~t~--~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r 111 (115)
T 4hc9_A 60 TSCANCQTT--TTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNR 111 (115)
T ss_dssp CCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC-
T ss_pred ccCCCcCCC--CcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhccc
Confidence 579999994 69999999999 89999999999999999999987766665544
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.19 E-value=1.3e-11 Score=104.93 Aligned_cols=47 Identities=45% Similarity=0.781 Sum_probs=41.2
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 017356 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRS 271 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~~sk~~~~ 271 (373)
.+.|.+|++ +.||+||+||.| .+|||||||+|+.++..|++.+.++.
T Consensus 5 ~~~C~~Cg~--~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpKKR 51 (115)
T 4hc9_A 5 GRECVNCGA--TSTPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPKRR 51 (115)
T ss_dssp -CCCTTTCC--SCCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCCCC
T ss_pred CCCCCCCCC--ccCCcceECCCC-CCcCcchhhhhhhccccccccccccc
Confidence 468999999 479999999999 79999999999999999998775543
No 8
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=94.74 E-value=0.01 Score=36.79 Aligned_cols=19 Identities=63% Similarity=0.737 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhhhhcccCC
Q 017356 153 RIASLVRFREKRKERCFDK 171 (373)
Q Consensus 153 R~asl~R~REKrkeR~f~K 171 (373)
|.+||.||.||||+|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 5789999999999987653
No 9
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=94.14 E-value=0.023 Score=34.85 Aligned_cols=18 Identities=61% Similarity=0.706 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHhhhhcc.....
Q 017356 151 SRRIASLVRFREKRKERC..... 168 (373)
Q Consensus 151 s~R~asl~R~REKrkeR~..... 168 (373)
..|.+||.||.||||+|.
T Consensus 4 ~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 4 IARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred hhHHHHHHHHHHHhhccC.....
Confidence 358999999999999973
No 10
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=46.51 E-value=4.2 Score=39.72 Aligned_cols=9 Identities=33% Similarity=0.693 Sum_probs=0.0
Q ss_pred ccccccccc
Q 017356 222 VRRCQHCGV 230 (373)
Q Consensus 222 ~~~C~~Cg~ 230 (373)
.|.|.||.+
T Consensus 314 ~~~~~~~~~ 322 (358)
T 2pk2_A 314 ARPNYHCQL 322 (358)
T ss_dssp ---------
T ss_pred CccceecHH
Confidence 567888865
No 11
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=36.99 E-value=18 Score=26.33 Aligned_cols=31 Identities=26% Similarity=0.674 Sum_probs=21.5
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHH
Q 017356 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (373)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (373)
.+|+.||.+...+...=.|| | ...|+.|=..
T Consensus 12 ~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~~ 42 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDL 42 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECS-S-CEEEHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCC-C-CEehHHHHHH
Confidence 47999998654444444565 3 5899999654
No 12
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=36.80 E-value=17 Score=28.01 Aligned_cols=32 Identities=25% Similarity=0.643 Sum_probs=22.2
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHHH
Q 017356 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMW 256 (373)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~ 256 (373)
.+|+.||.+...+...=.|| | ...|+.|=...
T Consensus 19 ~~CSFCGK~e~eV~~LIaGp-g-vyICdeCI~~c 50 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLC 50 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECS-S-CEEEHHHHHHH
T ss_pred cEecCCCCCHHHHcccCCCC-C-CChhHHHHHHH
Confidence 47999998654444444565 3 58999997544
No 13
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=36.35 E-value=2.8 Score=31.24 Aligned_cols=7 Identities=57% Similarity=1.497 Sum_probs=4.0
Q ss_pred ccccccc
Q 017356 224 RCQHCGV 230 (373)
Q Consensus 224 ~C~~Cg~ 230 (373)
.|..|++
T Consensus 15 eC~lC~v 21 (55)
T 2yrk_A 15 ECTLCGV 21 (55)
T ss_dssp CCTTTTC
T ss_pred cccccCc
Confidence 4666655
No 14
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=34.29 E-value=5.3 Score=28.06 Aligned_cols=32 Identities=19% Similarity=0.585 Sum_probs=20.6
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHHHHhc
Q 017356 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANK 259 (373)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~ 259 (373)
..|..|+. +++..+--.| ...|..||+-|..+
T Consensus 6 ~~CP~C~~----~~l~~d~~~g-elvC~~CG~v~~e~ 37 (50)
T 1pft_A 6 KVCPACES----AELIYDPERG-EIVCAKCGYVIEEN 37 (50)
T ss_dssp CSCTTTSC----CCEEEETTTT-EEEESSSCCBCCCC
T ss_pred EeCcCCCC----cceEEcCCCC-eEECcccCCccccc
Confidence 46888876 3444444344 68888888877543
No 15
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=34.17 E-value=11 Score=27.69 Aligned_cols=32 Identities=22% Similarity=0.481 Sum_probs=23.6
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHHHHhc
Q 017356 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANK 259 (373)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~ 259 (373)
..|..|+. ++...+.-.| ...|..||+-+..+
T Consensus 12 ~~Cp~C~~----~~lv~D~~~g-e~vC~~CGlVl~e~ 43 (58)
T 1dl6_A 12 VTCPNHPD----AILVEDYRAG-DMICPECGLVVGDR 43 (58)
T ss_dssp CSBTTBSS----SCCEECSSSC-CEECTTTCCEECCS
T ss_pred ccCcCCCC----CceeEeCCCC-eEEeCCCCCEEecc
Confidence 47999987 3456665556 79999999988654
No 16
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=31.78 E-value=8.2 Score=30.50 Aligned_cols=34 Identities=29% Similarity=0.499 Sum_probs=25.6
Q ss_pred ccccccccccCCCCccccccCCCCCcccchHHHHH
Q 017356 221 VVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (373)
Q Consensus 221 ~~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (373)
..|.|..|... ..+|.+.+--..+..-|-+||..
T Consensus 16 ~tWVCpICsfs-N~v~s~fdp~~~~lPpC~aCGIk 49 (76)
T 2j9u_B 16 STWVCPICMVS-NETQGEFTKDTLPTPICINCGVP 49 (76)
T ss_dssp EEEECTTTCCE-EEESSCCCTTCSSCCBCTTTCCB
T ss_pred cceECcccccc-CcCccccCCCCCCCCcccccCcc
Confidence 47999999875 45777765444667789999974
No 17
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.32 E-value=17 Score=25.11 Aligned_cols=40 Identities=18% Similarity=0.502 Sum_probs=27.4
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCCCC
Q 017356 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRD 264 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~lr~ 264 (373)
...|..|+..-.....++. .....|..||..|..+..|+.
T Consensus 18 ~~~C~~C~k~f~~~~~l~~---~~~~~C~~C~~~f~~~~~l~~ 57 (73)
T 2ctu_A 18 SQKCSKCGIIFIRRSTLSR---RKTPMCEKCRKDSCQEAALNK 57 (73)
T ss_dssp EEECSSSCCEEECCCCCCC---SSSCCCHHHHHTCSCCCSSCC
T ss_pred CeeCCcccchhCCHHHhCc---CCCCCCCCCChhhcCHHHHHH
Confidence 4689999864333333444 446899999999987766554
No 18
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=28.07 E-value=40 Score=29.00 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=31.1
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCC
Q 017356 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTL 262 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~l 262 (373)
...|..|+.. -|.|=.-..| ..+|-.|.-..+.-|.+
T Consensus 36 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 72 (138)
T 2owa_A 36 NRTCFDCESR---NPTWLSLSFA-VFICLNCSSDHRKMGVH 72 (138)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHTTCTT
T ss_pred CCcCCCCcCC---CCCeEEecCC-EEEhHhhhHHHhCCCCC
Confidence 4689999984 6999999899 89999999888876653
No 19
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=25.44 E-value=44 Score=28.49 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=31.4
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCC
Q 017356 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTL 262 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~l 262 (373)
...|..|+.. -|.|=.-..| ..+|-.|.-..+..|.+
T Consensus 27 N~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~lG~h 63 (134)
T 2iqj_A 27 NKFCADCQSK---GPRWASWNIG-VFICIRCAGIHRNLGVH 63 (134)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCcCcCC---CCCeEEecCC-EEEhHhhhHHHhcCCCC
Confidence 5689999984 6999998889 89999999888877653
No 20
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=25.29 E-value=24 Score=30.45 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=19.2
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHHHH
Q 017356 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMW 256 (373)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~ 256 (373)
..|..|+-++ |-+-+++-. --.-|+|||-.-
T Consensus 104 VlC~~C~sPd--T~l~k~~r~-~~l~C~ACGa~~ 134 (139)
T 3cw2_K 104 VECSTCKSLD--TILKKEKKS-WYIVCLACGAQT 134 (139)
T ss_dssp SSCCSSSSSC--CCSCSSCST-TTSSCCC-----
T ss_pred eECCCCCCcC--cEEEEeCCe-EEEEecCCCCCC
Confidence 5799999975 777776522 247899999653
No 21
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.58 E-value=46 Score=29.04 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=31.4
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCC
Q 017356 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTL 262 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~l 262 (373)
...|..|+.. -|.|=.-..| ..+|-.|--..+..|.+
T Consensus 29 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 65 (149)
T 2crw_A 29 NKVCFDCGAK---NPSWASITYG-VFLCIDCSGSHRSLGVH 65 (149)
T ss_dssp TSBCSSSCCB---SCCCEETTTT-EECCHHHHHHHHHHCTT
T ss_pred CCcCCCCcCC---CCCcEEeccC-EEEchhcchhhccCCCC
Confidence 4689999984 7999998889 89999999888877654
No 22
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=29.57 E-value=17 Score=20.04 Aligned_cols=17 Identities=24% Similarity=0.673 Sum_probs=12.8
Q ss_pred ccchHHHHHHHhcCCCC
Q 017356 247 TLCNACGLMWANKGTLR 263 (373)
Q Consensus 247 ~LCNACGl~~~~~~~lr 263 (373)
..|..||..|.....|+
T Consensus 3 ~~C~~C~k~f~~~~~l~ 19 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQLA 19 (26)
Confidence 56899999888766554
No 23
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.54 E-value=66 Score=27.62 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=31.1
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCCC
Q 017356 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTL 262 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~l 262 (373)
...|..|+.. -|.|=.-..| ..+|-.|.-..+..|.+
T Consensus 29 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 65 (141)
T 2crr_A 29 NKYCADCEAK---GPRWASWNIG-VFICIRCAGIHRNLGVH 65 (141)
T ss_dssp GSSCSSSCCS---SCCSEETTTT-EECCHHHHHHHHHHCTT
T ss_pred CCcCCCCCCC---CCCeEEeccC-eEEhhhhhHhHhcCCCC
Confidence 4689999984 6999988888 89999999888877653
No 24
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=22.52 E-value=21 Score=26.51 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=27.2
Q ss_pred cccccc--cccCCCCccccccCCCCCcccchHHHHH
Q 017356 222 VRRCQH--CGVSENNTPAMRRGPAGPRTLCNACGLM 255 (373)
Q Consensus 222 ~~~C~~--Cg~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (373)
..+|.. |++ ..-|.|+-...|.+..||-|+..
T Consensus 9 pvRC~r~~Cra--ylNP~~~~~~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 9 PVLCSRTTCRA--VLNPLCQVDYRAKLWACNFCYQR 42 (59)
T ss_dssp CCBCSCTTTCC--BCCTTSEEEGGGTEEECSSSCCE
T ss_pred CcccCCCCCCe--EECCceEEECCCCEEEcccCCCc
Confidence 568998 998 46999999888889999999854
No 25
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=22.16 E-value=26 Score=29.95 Aligned_cols=31 Identities=26% Similarity=0.641 Sum_probs=23.5
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHH
Q 017356 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGL 254 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl 254 (373)
.+.|..||.. .+...-+|..+.+..|-.||.
T Consensus 3 ~~~C~~CG~~--~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 3 MKFCSQCGGE--VILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp CCBCTTTCCB--CEEECCTTCSSCEEEETTTTE
T ss_pred cccCchhCCc--cccccccCCCCcceECCCCCC
Confidence 3589999984 455556677777889999994
No 26
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=21.69 E-value=62 Score=28.79 Aligned_cols=36 Identities=28% Similarity=0.562 Sum_probs=30.6
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCC
Q 017356 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGT 261 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~ 261 (373)
...|..|+.. -|.|=.-..| ..||-.|.-..+..|.
T Consensus 22 N~~CaDCga~---~P~WaS~nlG-vflCi~CSGiHR~LG~ 57 (163)
T 3sub_A 22 NNKCFDCGIS---NPDWVSVNHG-IFLCINCSGVHRSLGV 57 (163)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHTCT
T ss_pred CCccccCCCC---CCCeEEecCC-eeEHHhhhHHhcCCCC
Confidence 5689999984 7999998888 8999999887777664
No 27
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=21.58 E-value=23 Score=38.33 Aligned_cols=32 Identities=31% Similarity=0.580 Sum_probs=27.8
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHH
Q 017356 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (373)
.-+|..|++ ..-|.++-...|.+..||-|+..
T Consensus 112 pvRC~~Cra--yiNPf~~~~~~g~~W~C~~C~~~ 143 (810)
T 1pcx_A 112 IVRCRRCRS--YMNPFVTFIEQGRRWRCNFCRLA 143 (810)
T ss_dssp CCBCTTTCC--BCCTTCEEETTTTEEECTTTCCE
T ss_pred CCccCCccC--EecCceEEeCCCCEEEccCCCCc
Confidence 468999999 56999988888989999999964
No 28
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=21.32 E-value=57 Score=28.00 Aligned_cols=36 Identities=19% Similarity=0.455 Sum_probs=30.1
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHHHHhcCC
Q 017356 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGT 261 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~ 261 (373)
...|..|+.. -|.|=.-..| ..+|-.|.-..+..|.
T Consensus 25 N~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~LG~ 60 (140)
T 2olm_A 25 NRKCFDCDQR---GPTYVNMTVG-SFVCTSCSGSLRGLNP 60 (140)
T ss_dssp GGSCTTTCSS---CCCEEETTTT-EEECHHHHHHHTTSSS
T ss_pred CCcCCCCCCC---CCCceeeccC-EEEchhccchhccCCC
Confidence 4689999984 7999998888 8999999888776654
No 29
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=21.28 E-value=20 Score=37.58 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=0.0
Q ss_pred cccccccccccCCCCccccccCCCCCcccchHHHHHHH
Q 017356 220 TVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWA 257 (373)
Q Consensus 220 ~~~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~~~ 257 (373)
...|.|..|.++ ..+|...+--..+..-|-+||..-.
T Consensus 115 ~~tWvC~ICsfs-N~~~~~f~~~~~~~p~C~~CGi~p~ 151 (566)
T 1w7p_D 115 VSTWVCPICMVS-NETQGEFTKDTLPTPICINCGVPAD 151 (566)
T ss_dssp --------------------------------------
T ss_pred ccceeccccccC-CCCCCCCCcccCCCCcccccCCCCc
Confidence 458999999986 4566555433355678999999753
No 30
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=21.13 E-value=24 Score=38.97 Aligned_cols=32 Identities=31% Similarity=0.580 Sum_probs=27.8
Q ss_pred cccccccccCCCCccccccCCCCCcccchHHHHH
Q 017356 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (373)
Q Consensus 222 ~~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (373)
..+|..|++ ..-|.++-...|.+..||-|+..
T Consensus 228 pvRC~rCrA--YiNPf~~~~~~g~~W~CnfC~~~ 259 (926)
T 1m2v_B 228 IVRCRRCRS--YMNPFVTFIEQGRRWRCNFCRLA 259 (926)
T ss_dssp CCBCSSSCC--BCCTTCEEETTTTEEECTTTCCE
T ss_pred CCccCCccC--EecCceEEeCCCCEEEccCCCCC
Confidence 468999999 56999988888989999999965
No 31
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=20.35 E-value=25 Score=30.29 Aligned_cols=29 Identities=31% Similarity=0.665 Sum_probs=21.2
Q ss_pred ccccccccCCCCccccccCCCCCcccchHHHH
Q 017356 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGL 254 (373)
Q Consensus 223 ~~C~~Cg~~~~~TP~WR~GP~G~~~LCNACGl 254 (373)
..|..|+-++ |-+-+++- ---.-|+|||-
T Consensus 103 VlC~~C~sPd--T~l~k~~r-~~~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRPD--TRIIREGR-ISLLKCEACGA 131 (138)
T ss_dssp HHHTCCSSCS--SCCEEETT-TTEEECSTTSC
T ss_pred EECCCCCCcC--cEEEEcCC-eEEEEccCCCC
Confidence 4699999975 77777652 22478999984
Done!